Query 039280
Match_columns 487
No_of_seqs 428 out of 2694
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 08:07:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1378 Purple acid phosphatas 100.0 3.5E-81 7.6E-86 626.9 35.5 395 8-486 7-419 (452)
2 PLN02533 probable purple acid 100.0 5.6E-77 1.2E-81 616.8 42.8 357 46-486 40-400 (427)
3 cd00839 MPP_PAPs purple acid p 100.0 5.5E-45 1.2E-49 363.2 25.6 260 171-486 3-278 (294)
4 cd07378 MPP_ACP5 Homo sapiens 100.0 2.8E-31 6.1E-36 262.3 24.6 240 173-485 1-271 (277)
5 PTZ00422 glideosome-associated 100.0 1.5E-30 3.3E-35 261.9 24.9 237 172-486 26-313 (394)
6 cd07395 MPP_CSTP1 Homo sapiens 100.0 7.7E-27 1.7E-31 228.8 22.9 205 171-412 3-236 (262)
7 PF09423 PhoD: PhoD-like phosp 99.9 1.2E-23 2.7E-28 221.7 25.2 261 125-390 60-381 (453)
8 cd07402 MPP_GpdQ Enterobacter 99.9 1.1E-23 2.4E-28 203.5 19.9 192 174-413 1-213 (240)
9 cd07396 MPP_Nbla03831 Homo sap 99.9 1.6E-23 3.5E-28 205.7 17.2 198 173-413 1-247 (267)
10 COG3540 PhoD Phosphodiesterase 99.9 3.1E-22 6.6E-27 200.4 19.6 313 50-389 37-421 (522)
11 KOG2679 Purple (tartrate-resis 99.9 2E-22 4.4E-27 188.0 14.2 203 171-412 42-275 (336)
12 cd07401 MPP_TMEM62_N Homo sapi 99.9 4.2E-21 9.2E-26 187.3 20.3 192 175-392 2-216 (256)
13 PRK11148 cyclic 3',5'-adenosin 99.9 2.6E-20 5.7E-25 183.8 22.5 191 172-412 14-225 (275)
14 cd07399 MPP_YvnB Bacillus subt 99.8 1.1E-19 2.5E-24 172.5 13.6 149 173-390 1-165 (214)
15 cd00842 MPP_ASMase acid sphing 99.8 1.3E-18 2.8E-23 173.6 15.4 192 177-389 42-264 (296)
16 PF00149 Metallophos: Calcineu 99.7 8.8E-18 1.9E-22 150.9 8.2 188 173-386 1-200 (200)
17 cd08163 MPP_Cdc1 Saccharomyces 99.7 2.5E-16 5.4E-21 153.2 18.7 174 188-390 34-232 (257)
18 cd07393 MPP_DR1119 Deinococcus 99.7 1.2E-15 2.5E-20 146.9 16.5 190 176-410 2-226 (232)
19 cd07383 MPP_Dcr2 Saccharomyces 99.6 2.3E-15 4.9E-20 141.5 13.9 150 172-390 2-180 (199)
20 cd07392 MPP_PAE1087 Pyrobaculu 99.6 6.6E-15 1.4E-19 136.4 16.1 167 175-387 1-174 (188)
21 TIGR03729 acc_ester putative p 99.6 3.7E-15 8E-20 144.1 14.4 176 174-387 1-222 (239)
22 TIGR03767 P_acnes_RR metalloph 99.6 8E-15 1.7E-19 150.4 17.2 94 293-389 290-395 (496)
23 COG1409 Icc Predicted phosphoh 99.6 9.1E-14 2E-18 137.9 16.1 179 173-386 1-193 (301)
24 cd07385 MPP_YkuE_C Bacillus su 99.5 1.1E-13 2.3E-18 132.2 15.4 187 172-412 1-206 (223)
25 cd07400 MPP_YydB Bacillus subt 99.5 7.1E-14 1.5E-18 124.2 12.7 132 175-409 1-144 (144)
26 cd07404 MPP_MS158 Microscilla 99.5 7.3E-14 1.6E-18 127.3 9.6 145 175-389 1-152 (166)
27 cd07388 MPP_Tt1561 Thermus the 99.5 1.8E-12 3.8E-17 123.2 17.9 173 172-384 4-189 (224)
28 PRK11340 phosphodiesterase Yae 99.5 1.7E-12 3.7E-17 127.8 16.0 164 172-392 49-220 (271)
29 cd00840 MPP_Mre11_N Mre11 nucl 99.4 1.1E-12 2.3E-17 125.0 12.5 185 174-389 1-204 (223)
30 TIGR03768 RPA4764 metallophosp 99.4 7.3E-12 1.6E-16 127.5 16.6 95 293-388 291-413 (492)
31 PF14008 Metallophos_C: Iron/z 99.4 3.7E-13 8E-18 101.5 4.7 50 400-486 1-50 (62)
32 cd00838 MPP_superfamily metall 99.3 2.2E-11 4.7E-16 104.7 11.8 116 176-390 1-119 (131)
33 KOG1432 Predicted DNA repair e 99.3 3.3E-10 7.1E-15 110.3 18.0 209 172-412 53-330 (379)
34 cd07389 MPP_PhoD Bacillus subt 99.2 2.2E-10 4.8E-15 109.8 15.1 178 174-389 1-207 (228)
35 cd07397 MPP_DevT Myxococcus xa 99.2 5.8E-10 1.3E-14 106.4 17.4 195 173-408 1-232 (238)
36 cd07379 MPP_239FB Homo sapiens 99.2 1.7E-10 3.6E-15 101.5 10.9 117 174-387 1-117 (135)
37 PF12850 Metallophos_2: Calcin 99.2 1.6E-10 3.5E-15 103.5 10.5 139 173-413 1-140 (156)
38 COG1408 Predicted phosphohydro 99.1 6.9E-10 1.5E-14 109.3 14.2 172 172-394 44-232 (284)
39 PRK05340 UDP-2,3-diacylglucosa 99.1 1.1E-09 2.4E-14 106.0 13.5 198 173-412 1-221 (241)
40 TIGR00040 yfcE phosphoesterase 99.0 7.6E-09 1.6E-13 93.5 13.7 37 173-209 1-39 (158)
41 cd00841 MPP_YfcE Escherichia c 99.0 4.3E-09 9.3E-14 94.6 10.7 56 340-412 77-132 (155)
42 cd08166 MPP_Cdc1_like_1 unchar 99.0 4.6E-09 9.9E-14 97.1 10.6 39 341-389 112-150 (195)
43 KOG3770 Acid sphingomyelinase 98.9 2.1E-08 4.5E-13 104.8 14.9 179 189-389 199-407 (577)
44 cd07403 MPP_TTHA0053 Thermus t 98.9 1.2E-08 2.5E-13 89.1 9.8 49 340-389 58-106 (129)
45 COG2129 Predicted phosphoester 98.9 4.4E-08 9.6E-13 91.1 13.9 191 172-409 3-203 (226)
46 PF14582 Metallophos_3: Metall 98.9 6.8E-08 1.5E-12 89.6 14.4 193 172-387 5-219 (255)
47 COG1768 Predicted phosphohydro 98.8 2.9E-08 6.2E-13 88.3 11.3 64 336-410 157-220 (230)
48 cd08165 MPP_MPPE1 human MPPE1 98.8 1.4E-08 3.1E-13 91.5 9.5 31 341-389 107-137 (156)
49 TIGR01854 lipid_A_lpxH UDP-2,3 98.8 8.6E-08 1.9E-12 92.2 15.3 184 176-412 2-219 (231)
50 cd07384 MPP_Cdc1_like Saccharo 98.8 4.2E-08 9.1E-13 89.8 11.9 32 341-390 119-150 (171)
51 cd07394 MPP_Vps29 Homo sapiens 98.7 2.8E-07 6.1E-12 84.9 15.0 40 365-412 97-136 (178)
52 cd07398 MPP_YbbF-LpxH Escheric 98.7 8.1E-08 1.8E-12 91.1 10.0 198 176-410 1-217 (217)
53 cd00845 MPP_UshA_N_like Escher 98.7 1.9E-07 4E-12 90.9 12.6 193 173-412 1-226 (252)
54 PRK09453 phosphodiesterase; Pr 98.7 3.8E-07 8.2E-12 84.4 13.2 75 173-267 1-76 (182)
55 cd07410 MPP_CpdB_N Escherichia 98.6 8.8E-07 1.9E-11 87.6 15.9 207 173-413 1-250 (277)
56 cd08164 MPP_Ted1 Saccharomyces 98.6 9.5E-08 2.1E-12 88.3 7.9 31 341-389 129-159 (193)
57 cd07406 MPP_CG11883_N Drosophi 98.6 8E-07 1.7E-11 86.9 13.5 194 173-415 1-228 (257)
58 TIGR00583 mre11 DNA repair pro 98.5 1.1E-06 2.3E-11 90.9 11.7 40 172-211 3-55 (405)
59 cd00844 MPP_Dbr1_N Dbr1 RNA la 98.5 5.3E-06 1.1E-10 81.0 15.5 188 175-391 1-234 (262)
60 COG0420 SbcD DNA repair exonuc 98.4 1.1E-06 2.4E-11 91.2 10.3 74 173-268 1-89 (390)
61 cd07411 MPP_SoxB_N Thermus the 98.4 3.9E-06 8.5E-11 82.3 13.5 178 189-413 40-241 (264)
62 COG2908 Uncharacterized protei 98.4 1.3E-06 2.8E-11 82.3 7.9 192 177-415 2-219 (237)
63 cd07408 MPP_SA0022_N Staphyloc 98.3 5.8E-06 1.3E-10 80.8 12.9 201 173-412 1-234 (257)
64 cd07412 MPP_YhcR_N Bacillus su 98.3 1.2E-05 2.5E-10 80.0 14.8 86 323-415 178-265 (288)
65 COG0622 Predicted phosphoester 98.2 2.1E-05 4.5E-10 71.7 12.9 38 173-210 2-40 (172)
66 cd07382 MPP_DR1281 Deinococcus 98.2 4.2E-05 9.1E-10 74.3 15.6 190 174-413 1-201 (255)
67 PRK04036 DNA polymerase II sma 98.2 1.1E-05 2.3E-10 86.3 12.3 204 171-412 242-470 (504)
68 cd07409 MPP_CD73_N CD73 ecto-5 98.2 1.9E-05 4.1E-10 78.2 12.6 113 258-387 85-219 (281)
69 cd07407 MPP_YHR202W_N Saccharo 98.2 0.00013 2.7E-09 72.3 17.9 204 172-415 5-253 (282)
70 PRK09419 bifunctional 2',3'-cy 98.1 8.1E-05 1.8E-09 87.5 17.8 184 171-387 659-883 (1163)
71 cd07424 MPP_PrpA_PrpB PrpA and 98.1 4.6E-06 9.9E-11 78.8 5.5 37 174-210 2-40 (207)
72 TIGR00282 metallophosphoestera 98.1 0.0002 4.4E-09 69.8 16.9 194 173-413 1-204 (266)
73 cd07386 MPP_DNA_pol_II_small_a 98.1 3.8E-05 8.1E-10 74.4 11.5 198 176-411 2-220 (243)
74 KOG3662 Cell division control 98.0 4.5E-05 9.8E-10 77.6 12.0 116 171-314 47-183 (410)
75 cd07425 MPP_Shelphs Shewanella 98.0 1.3E-05 2.8E-10 75.8 6.5 25 365-389 158-182 (208)
76 TIGR00619 sbcd exonuclease Sbc 98.0 1.9E-05 4.2E-10 76.9 7.8 73 173-267 1-88 (253)
77 cd07405 MPP_UshA_N Escherichia 97.9 0.00018 3.8E-09 71.5 13.7 50 336-387 173-222 (285)
78 PRK11439 pphA serine/threonine 97.9 8.5E-06 1.8E-10 77.6 4.0 37 174-210 18-56 (218)
79 cd07390 MPP_AQ1575 Aquifex aeo 97.8 3.1E-05 6.8E-10 70.6 6.4 17 373-389 124-140 (168)
80 COG0737 UshA 5'-nucleotidase/2 97.8 0.00053 1.1E-08 74.0 16.6 211 171-415 25-273 (517)
81 PRK10966 exonuclease subunit S 97.8 5.3E-05 1.1E-09 78.9 8.4 73 173-267 1-87 (407)
82 PHA02546 47 endonuclease subun 97.8 6.4E-05 1.4E-09 76.5 7.8 74 173-267 1-89 (340)
83 cd07380 MPP_CWF19_N Schizosacc 97.7 0.00015 3.2E-09 64.7 8.5 54 340-394 71-130 (150)
84 cd08162 MPP_PhoA_N Synechococc 97.7 0.001 2.2E-08 66.9 15.0 38 173-210 1-50 (313)
85 TIGR01530 nadN NAD pyrophospha 97.7 0.00068 1.5E-08 73.5 14.2 110 258-387 85-219 (550)
86 PRK09558 ushA bifunctional UDP 97.6 0.00084 1.8E-08 73.0 13.5 184 171-387 33-258 (551)
87 PRK11907 bifunctional 2',3'-cy 97.4 0.0068 1.5E-07 68.1 18.3 47 335-386 308-354 (814)
88 cd07391 MPP_PF1019 Pyrococcus 97.3 0.00042 9E-09 63.4 6.2 51 195-267 38-88 (172)
89 PRK09418 bifunctional 2',3'-cy 97.2 0.011 2.4E-07 66.2 16.1 64 336-413 244-308 (780)
90 PRK09419 bifunctional 2',3'-cy 97.1 0.0072 1.6E-07 71.4 15.1 49 335-388 233-282 (1163)
91 PHA02239 putative protein phos 97.1 0.001 2.2E-08 64.0 6.7 38 173-210 1-41 (235)
92 KOG2863 RNA lariat debranching 97.1 0.0075 1.6E-07 59.8 12.4 182 173-385 1-229 (456)
93 COG1311 HYS2 Archaeal DNA poly 97.0 0.0091 2E-07 61.9 12.9 89 171-269 224-323 (481)
94 cd07423 MPP_PrpE Bacillus subt 97.0 0.0013 2.9E-08 63.2 6.2 69 173-267 1-80 (234)
95 PRK00166 apaH diadenosine tetr 96.9 0.0014 3.1E-08 64.5 6.0 67 173-267 1-69 (275)
96 cd07387 MPP_PolD2_C PolD2 (DNA 96.9 0.011 2.4E-07 57.4 11.8 192 175-389 2-218 (257)
97 PRK13625 bis(5'-nucleosyl)-tet 96.8 0.0026 5.5E-08 61.8 6.8 38 173-210 1-48 (245)
98 COG4186 Predicted phosphoester 96.8 0.016 3.4E-07 51.1 10.2 38 340-385 110-147 (186)
99 TIGR00024 SbcD_rel_arch putati 96.7 0.0041 8.9E-08 59.5 7.2 70 173-267 15-102 (225)
100 PRK09420 cpdB bifunctional 2', 96.7 0.032 6.9E-07 61.7 14.9 46 335-386 217-263 (649)
101 TIGR01390 CycNucDiestase 2',3' 96.7 0.042 9E-07 60.6 15.4 45 336-386 195-240 (626)
102 COG1692 Calcineurin-like phosp 96.3 0.19 4.1E-06 47.8 15.2 188 173-407 1-196 (266)
103 cd07413 MPP_PA3087 Pseudomonas 96.3 0.0046 1E-07 59.0 4.8 36 175-210 1-45 (222)
104 PRK09968 serine/threonine-spec 96.2 0.0035 7.6E-08 59.7 3.3 37 174-210 16-54 (218)
105 PF13277 YmdB: YmdB-like prote 96.2 0.15 3.3E-06 49.0 13.8 188 176-413 1-199 (253)
106 PF00041 fn3: Fibronectin type 96.1 0.036 7.7E-07 43.3 8.1 76 49-150 2-77 (85)
107 COG5555 Cytolysin, a secreted 96.0 0.019 4.1E-07 55.3 7.0 142 248-390 164-338 (392)
108 cd07422 MPP_ApaH Escherichia c 96.0 0.0088 1.9E-07 58.3 4.9 64 176-267 2-67 (257)
109 cd00144 MPP_PPP_family phospho 95.9 0.0075 1.6E-07 57.3 4.0 35 176-210 1-36 (225)
110 cd07381 MPP_CapA CapA and rela 95.9 0.1 2.2E-06 50.3 11.8 128 254-389 77-222 (239)
111 TIGR00668 apaH bis(5'-nucleosy 95.8 0.014 2.9E-07 57.4 5.2 38 173-210 1-40 (279)
112 cd07421 MPP_Rhilphs Rhilph pho 95.8 0.016 3.5E-07 57.0 5.6 37 174-210 3-46 (304)
113 smart00854 PGA_cap Bacterial c 95.6 0.18 3.8E-06 48.7 12.1 59 325-389 162-220 (239)
114 COG1407 Predicted ICC-like pho 95.1 0.053 1.1E-06 51.6 6.5 72 174-267 21-110 (235)
115 PF09587 PGA_cap: Bacterial ca 94.1 0.59 1.3E-05 45.3 11.4 128 254-389 75-231 (250)
116 cd07416 MPP_PP2B PP2B, metallo 92.9 0.13 2.7E-06 51.6 4.4 23 363-385 222-244 (305)
117 cd07420 MPP_RdgC Drosophila me 92.8 0.18 3.8E-06 50.8 5.3 23 363-385 253-275 (321)
118 KOG4419 5' nucleotidase [Nucle 92.7 1.5 3.1E-05 47.0 12.0 59 319-388 211-271 (602)
119 smart00156 PP2Ac Protein phosp 92.6 0.17 3.7E-06 49.8 4.9 21 363-383 200-220 (271)
120 KOG2310 DNA repair exonuclease 92.6 0.4 8.6E-06 50.5 7.6 41 172-212 13-66 (646)
121 cd07414 MPP_PP1_PPKL PP1, PPKL 91.8 0.22 4.8E-06 49.6 4.7 23 363-385 222-244 (293)
122 cd07415 MPP_PP2A_PP4_PP6 PP2A, 91.5 0.23 5E-06 49.2 4.4 23 363-385 214-236 (285)
123 PTZ00239 serine/threonine prot 90.8 0.33 7.2E-06 48.5 4.8 23 363-385 215-237 (303)
124 cd07418 MPP_PP7 PP7, metalloph 90.8 0.41 8.8E-06 49.2 5.5 21 363-383 273-293 (377)
125 PTZ00480 serine/threonine-prot 90.1 0.43 9.3E-06 48.0 4.9 23 363-385 231-253 (320)
126 PTZ00244 serine/threonine-prot 89.2 0.18 3.9E-06 50.2 1.5 23 363-385 224-246 (294)
127 cd07417 MPP_PP5_C PP5, C-termi 87.7 0.85 1.8E-05 45.9 5.1 23 363-385 233-255 (316)
128 cd07419 MPP_Bsu1_C Arabidopsis 87.5 1.1 2.3E-05 45.2 5.7 21 363-383 242-262 (311)
129 KOG4221 Receptor mediating net 87.5 2.6 5.7E-05 48.6 9.1 101 41-165 609-713 (1381)
130 KOG0196 Tyrosine kinase, EPH ( 86.4 4.8 0.0001 44.8 10.0 38 128-165 497-537 (996)
131 cd00063 FN3 Fibronectin type 3 85.5 7.9 0.00017 29.3 8.8 22 128-149 56-77 (93)
132 smart00060 FN3 Fibronectin typ 83.2 8.8 0.00019 28.0 7.9 22 128-149 56-77 (83)
133 PF04042 DNA_pol_E_B: DNA poly 82.7 0.97 2.1E-05 42.4 2.7 83 175-269 1-93 (209)
134 KOG3325 Membrane coat complex 81.2 2.1 4.5E-05 37.7 3.8 42 364-413 97-138 (183)
135 KOG4258 Insulin/growth factor 60.9 30 0.00064 39.0 7.7 125 47-182 486-624 (1025)
136 PTZ00235 DNA polymerase epsilo 60.1 60 0.0013 32.2 9.0 80 172-267 27-122 (291)
137 KOG4221 Receptor mediating net 56.3 73 0.0016 37.5 10.0 37 128-164 573-612 (1381)
138 KOG3513 Neural cell adhesion m 50.7 1.2E+02 0.0026 35.4 10.6 22 127-148 875-896 (1051)
139 KOG3947 Phosphoesterases [Gene 50.5 27 0.00059 34.1 4.8 34 172-210 61-94 (305)
140 KOG0374 Serine/threonine speci 47.8 19 0.0004 36.6 3.4 23 363-385 233-255 (331)
141 KOG0372 Serine/threonine speci 44.3 38 0.00083 32.6 4.6 34 175-210 45-81 (303)
142 PF07353 Uroplakin_II: Uroplak 41.6 31 0.00067 30.8 3.4 38 128-165 101-140 (184)
143 KOG0373 Serine/threonine speci 37.7 45 0.00097 31.5 4.0 35 175-211 48-85 (306)
144 KOG0371 Serine/threonine prote 34.1 50 0.0011 32.1 3.8 34 175-210 62-98 (319)
145 cd02852 Isoamylase_N_term Isoa 33.8 52 0.0011 27.7 3.6 22 127-148 49-70 (119)
146 KOG2476 Uncharacterized conser 33.6 1.2E+02 0.0026 31.9 6.7 37 172-210 5-46 (528)
147 cd02856 Glycogen_debranching_e 31.8 61 0.0013 26.5 3.6 22 127-148 45-66 (103)
148 cd02853 MTHase_N_term Maltooli 30.2 63 0.0014 25.3 3.3 21 127-148 40-60 (85)
149 cd02860 Pullulanase_N_term Pul 28.7 68 0.0015 26.0 3.4 23 127-149 47-69 (100)
150 PF09294 Interfer-bind: Interf 26.9 57 0.0012 26.4 2.6 20 129-148 67-86 (106)
151 PRK09968 serine/threonine-spec 25.9 54 0.0012 30.9 2.6 30 373-410 178-207 (218)
152 PHA01474 nonstructural protein 25.9 58 0.0013 22.1 1.9 23 51-73 23-45 (52)
153 KOG3513 Neural cell adhesion m 25.3 2.7E+02 0.0058 32.7 8.2 79 45-150 613-695 (1051)
154 PF10179 DUF2369: Uncharacteri 23.9 59 0.0013 32.4 2.4 18 130-147 16-33 (300)
155 PF09949 DUF2183: Uncharacteri 22.4 1.4E+02 0.003 24.5 4.1 29 173-203 65-93 (100)
156 TIGR02855 spore_yabG sporulati 21.2 78 0.0017 31.0 2.6 24 362-385 141-165 (283)
157 PF05582 Peptidase_U57: YabG p 21.1 95 0.0021 30.6 3.2 25 361-385 141-166 (287)
158 PF10179 DUF2369: Uncharacteri 21.1 99 0.0022 30.8 3.4 21 130-150 261-281 (300)
No 1
>KOG1378 consensus Purple acid phosphatase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.5e-81 Score=626.88 Aligned_cols=395 Identities=39% Similarity=0.631 Sum_probs=334.1
Q ss_pred CCCccccCCCCcccccCCCCCCCCCCCCCcccccCCCCCCCCCceEEEeeccCCCcEEEEEEcCCCCCCCCCCCCCCCCC
Q 039280 8 GIPTTLEGPFKPVTAPLDKNLRLNVSDLPYVLQNNAQGEGFQPEQIFVSLSARYDSVWISWITGEFQIGDNISPLDPELV 87 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~qi~l~~~~~~~~~~V~W~T~~~~~~~~~~~~~~~~~ 87 (487)
+++...-|+..+...++.|++......++.. .+...+.|+||||++++..++|+|+|.|.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~peQvhlS~~~~~~~m~VswvT~~~~------------- 69 (452)
T KOG1378|consen 7 SQSEINPKHTLHDINPLPGTLHLLSESEQLT----FPSVVNSPEQVHLSFTDNLNEMRVSWVTGDGE------------- 69 (452)
T ss_pred eeeeccCCCccccccccCccccccccccccc----CcccCCCCCeEEEeccCCCCcEEEEEeCCCCC-------------
Confidence 3456677788888888888877777665553 11125679999999999888999999999752
Q ss_pred ccEEEEeccCCCCceE-EEEEEEEeeeecCCCCCCccccCcEEEEEeCCCCCCCEEEEEEecCCCCCcCceEEEEcCCCC
Q 039280 88 QSIVYFRVFRSSLTYQ-AEGYSLVYNQLYPPDGLQNYTSGIIHHVLITGLQPNTLYEYECGDPSISAMSSSHYFRTMPVS 166 (487)
Q Consensus 88 ~~~V~yg~~~~~~~~~-~~g~~~~~~~~~~~~g~~~~~~~~~h~v~l~gL~P~T~Y~Y~vg~~~~~~~s~~~~F~T~p~~ 166 (487)
.++|+||+..++.... +.+.+..+...+.. .+++++++|+|+|++|+|+|+||||||++. .||++|+|+|+|.
T Consensus 70 ~~~V~Yg~~~~~~~~~~~~~~~~~~~~~y~~---~~~~sg~ih~~~~~~L~~~t~YyY~~Gs~~--~wS~~f~F~t~p~- 143 (452)
T KOG1378|consen 70 ENVVRYGEVKDKLDNSAARGMTEAWTDGYAN---GWRDSGYIHDAVMKNLEPNTRYYYQVGSDL--KWSEIFSFKTPPG- 143 (452)
T ss_pred CceEEEeecCCCccccccccceEEEeccccc---ccceeeeEeeeeecCCCCCceEEEEeCCCC--CcccceEeECCCC-
Confidence 3799999876653332 35555555433222 136789999999999999999999999986 6999999999982
Q ss_pred CCCCCCcEEEEEecCCCCCChHHHHHHHHHc-CCCEEEEcCccccccccccCCCccccccccCCCCcccchhh-HHHHHH
Q 039280 167 GPSDYPNRIAVVGDLGLTYNTTTTVAHLMSN-HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQ-PRWDYW 244 (487)
Q Consensus 167 ~~~~~~~~f~v~gD~~~~~~~~~~l~~l~~~-~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~-~~w~~~ 244 (487)
+..+.+|+++||+|.......++....+. ++|+|||+|||+|++++ + .+||+|
T Consensus 144 --~~~~~~~~i~GDlG~~~~~~s~~~~~~~~~k~d~vlhiGDlsYa~~~-----------------------~n~~wD~f 198 (452)
T KOG1378|consen 144 --QDSPTRAAIFGDMGCTEPYTSTLRNQEENLKPDAVLHIGDLSYAMGY-----------------------SNWQWDEF 198 (452)
T ss_pred --ccCceeEEEEccccccccccchHhHHhcccCCcEEEEecchhhcCCC-----------------------CccchHHH
Confidence 23589999999999987776777777665 49999999999998654 2 489999
Q ss_pred HHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccC--CCChHHH
Q 039280 245 GRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDY--DKSSDQY 322 (487)
Q Consensus 245 ~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~--~~~~~Q~ 322 (487)
+++++++++.+|+|++.||||++..... .|..|.+||.||.+++.+..++||||++|++|||+|+|+.++ ....+|+
T Consensus 199 ~r~vEp~As~vPymv~~GNHE~d~~~~~-~F~~y~~Rf~mP~~~s~s~~~l~YSfd~G~vhfv~lsse~~~~~~~~~~QY 277 (452)
T KOG1378|consen 199 GRQVEPIASYVPYMVCSGNHEIDWPPQP-CFVPYSARFNMPGNSSESDSNLYYSFDVGGVHFVVLSTETYYNFLKGTAQY 277 (452)
T ss_pred HhhhhhhhccCceEEecccccccCCCcc-cccccceeeccCCCcCCCCCceeEEEeeccEEEEEEeccccccccccchHH
Confidence 9999999999999999999999865443 699999999999998877788999999999999999999875 3478999
Q ss_pred HHHHHHhcccCCCCCCeEEEEcCCCccccCCC-CcchhH--HHHHHHHHHHHHcCCcEEEeCccccceecccccCCcc--
Q 039280 323 KWLESDLGDVDREVTPWLIAAWHPPWYSTYSA-HYREVE--CMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSL-- 397 (487)
Q Consensus 323 ~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~-~~~~~~--~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~-- 397 (487)
+||+++|++++|+++||+||+.|+|||+++.. +..+.+ .+|+.||+||.+|+||+||+||+|+|||++|++|.++
T Consensus 278 ~WL~~dL~~v~r~~tPWlIv~~HrP~Y~S~~~~~~reG~~~~~~~~LE~l~~~~~VDvvf~GHvH~YER~~piyn~~~~~ 357 (452)
T KOG1378|consen 278 QWLERDLASVDRKKTPWLIVQGHRPMYCSSNDAHYREGEFESMREGLEPLFVKYKVDVVFWGHVHRYERFCPIYNNTCGT 357 (452)
T ss_pred HHHHHHHHHhcccCCCeEEEEecccceecCCchhhccCcchhhHHHHHHHHHHhceeEEEeccceehhccchhhcceeec
Confidence 99999999999887999999999999998865 555555 7899999999999999999999999999999999887
Q ss_pred --------CCCCcEEEEeCCccccCCcccccCCCCCCCCCCCCCCCCCCccccccccCCCCCCcccCCCCCccceecCCc
Q 039280 398 --------DPCGPVYILVGDGGNVEGLDIVHADEPGNCPEPSTTPDMGGSCAFNFTSGPASGKFCWDRQPDYSAYRESSF 469 (487)
Q Consensus 398 --------~~~g~vyIv~G~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~ 469 (487)
+++||+||++|+||+.|+++.. . .+||+|||||+.+|
T Consensus 358 ~~~~~~~~d~~aPvyI~~G~~G~~e~~~~~-------------------------~----------~~~p~~Sa~R~~df 402 (452)
T KOG1378|consen 358 GWGPVHLVDGMAPIYITVGDGGNHEHLDPF-------------------------S----------SPQPEWSAFREGDF 402 (452)
T ss_pred cCCcccccCCCCCEEEEEccCCcccccCcc-------------------------c----------CCCCcccccccccC
Confidence 8899999999999999988741 1 26899999999999
Q ss_pred ceEEEEEEccceeEEee
Q 039280 470 GHGILEVLISLSIALTT 486 (487)
Q Consensus 470 G~~~l~~~n~t~~~~~~ 486 (487)
||++|++.|.||++|++
T Consensus 403 G~~~L~v~N~TH~~~~~ 419 (452)
T KOG1378|consen 403 GYTRLTAKNGTHAHVHW 419 (452)
T ss_pred CeEEEEEecCceEEEEE
Confidence 99999999999999986
No 2
>PLN02533 probable purple acid phosphatase
Probab=100.00 E-value=5.6e-77 Score=616.76 Aligned_cols=357 Identities=46% Similarity=0.814 Sum_probs=310.0
Q ss_pred CCCCCceEEEeeccCCCcEEEEEEcCCCCCCCCCCCCCCCCCccEEEEeccCCCCceEEEEEEEEeeeecCCCCCCcccc
Q 039280 46 EGFQPEQIFVSLSARYDSVWISWITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGYSLVYNQLYPPDGLQNYTS 125 (487)
Q Consensus 46 ~~~~P~qi~l~~~~~~~~~~V~W~T~~~~~~~~~~~~~~~~~~~~V~yg~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~ 125 (487)
....|+||||++++ +++|+|+|.|.+. ..+.|+||++++.+..++.|++.+|... ..+.+
T Consensus 40 ~~~~P~qvhls~~~-~~~m~V~W~T~~~-------------~~~~V~yG~~~~~l~~~a~g~~~~~~~~------~~~~~ 99 (427)
T PLN02533 40 DPTHPDQVHISLVG-PDKMRISWITQDS-------------IPPSVVYGTVSGKYEGSANGTSSSYHYL------LIYRS 99 (427)
T ss_pred CCCCCceEEEEEcC-CCeEEEEEECCCC-------------CCCEEEEecCCCCCcceEEEEEEEEecc------ccccC
Confidence 36789999999998 8999999999874 2479999999999999999998887631 13567
Q ss_pred CcEEEEEeCCCCCCCEEEEEEecCCCCCcCceEEEEcCCCCCCCCCCcEEEEEecCCCCCChHHHHHHHHHcCCCEEEEc
Q 039280 126 GIIHHVLITGLQPNTLYEYECGDPSISAMSSSHYFRTMPVSGPSDYPNRIAVVGDLGLTYNTTTTVAHLMSNHPDLLLLI 205 (487)
Q Consensus 126 ~~~h~v~l~gL~P~T~Y~Y~vg~~~~~~~s~~~~F~T~p~~~~~~~~~~f~v~gD~~~~~~~~~~l~~l~~~~pdfvl~~ 205 (487)
+++|+|+|+||+|+|+|+||||.. .+|++++|+|+|.. .++||+++||+|.......+++++.+.+|||||++
T Consensus 100 g~iH~v~l~~L~p~T~Y~Yrvg~~---~~s~~~~F~T~p~~----~~~~f~v~GDlG~~~~~~~tl~~i~~~~pD~vl~~ 172 (427)
T PLN02533 100 GQINDVVIGPLKPNTVYYYKCGGP---SSTQEFSFRTPPSK----FPIKFAVSGDLGTSEWTKSTLEHVSKWDYDVFILP 172 (427)
T ss_pred CeEEEEEeCCCCCCCEEEEEECCC---CCccceEEECCCCC----CCeEEEEEEeCCCCcccHHHHHHHHhcCCCEEEEc
Confidence 899999999999999999999964 46899999998853 37999999999977656678899988999999999
Q ss_pred CccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhccccCCCEEEecCCcccccCc--cchhhHHhhcccC
Q 039280 206 GDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQA--ENQTFAAYSSRFA 283 (487)
Q Consensus 206 GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~--~~~~~~~y~~~f~ 283 (487)
||++|++. |+.+|+.|++.++++.+.+|+|+++||||..... ....|..|..+|.
T Consensus 173 GDl~y~~~-----------------------~~~~wd~f~~~i~~l~s~~P~m~~~GNHE~~~~~~~~~~~f~~y~~rf~ 229 (427)
T PLN02533 173 GDLSYANF-----------------------YQPLWDTFGRLVQPLASQRPWMVTHGNHELEKIPILHPEKFTAYNARWR 229 (427)
T ss_pred Cccccccc-----------------------hHHHHHHHHHHhhhHhhcCceEEeCccccccccccccCcCccchhhccc
Confidence 99999642 3578999999999999999999999999986432 2346778999999
Q ss_pred CCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcch--hHH
Q 039280 284 FPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYRE--VEC 361 (487)
Q Consensus 284 ~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~--~~~ 361 (487)
||.++.+...+.||||++|++|||+||++.++....+|++||+++|++++|+.+||+||++|+|+|++...+..+ ...
T Consensus 230 mP~~~~g~~~~~yYSfd~g~vhfI~Lds~~~~~~~~~Q~~WLe~dL~~~~r~~~pwiIv~~H~P~y~s~~~~~~~~~~~~ 309 (427)
T PLN02533 230 MPFEESGSTSNLYYSFNVYGVHIIMLGSYTDFEPGSEQYQWLENNLKKIDRKTTPWVVAVVHAPWYNSNEAHQGEKESVG 309 (427)
T ss_pred CCccccCCCCCceEEEEECCEEEEEEeCCccccCchHHHHHHHHHHHhhcccCCCEEEEEeCCCeeecccccCCcchhHH
Confidence 998766666789999999999999999998887889999999999999988889999999999999876544322 345
Q ss_pred HHHHHHHHHHHcCCcEEEeCccccceecccccCCccCCCCcEEEEeCCccccCCcccccCCCCCCCCCCCCCCCCCCccc
Q 039280 362 MRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGNVEGLDIVHADEPGNCPEPSTTPDMGGSCA 441 (487)
Q Consensus 362 ~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (487)
+|+.|++||++|+|||+|+||+|.|||++|+++++++++|++||++|+||+.|++...+
T Consensus 310 ~r~~le~Ll~~~~VdlvlsGH~H~YeR~~p~~~~~~~~~gpvyiv~G~gG~~e~~~~~~--------------------- 368 (427)
T PLN02533 310 MKESMETLLYKARVDLVFAGHVHAYERFDRVYQGKTDKCGPVYITIGDGGNREGLATKY--------------------- 368 (427)
T ss_pred HHHHHHHHHHHhCCcEEEecceecccccccccCCccCCCCCEEEEeCCCcccccccccc---------------------
Confidence 78899999999999999999999999999999999999999999999999998764211
Q ss_pred cccccCCCCCCcccCCCCCccceecCCcceEEEEEEccceeEEee
Q 039280 442 FNFTSGPASGKFCWDRQPDYSAYRESSFGHGILEVLISLSIALTT 486 (487)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~s~~r~~~~G~~~l~~~n~t~~~~~~ 486 (487)
..++|+||+||+.+|||++|+|+|+|||+||.
T Consensus 369 -------------~~~~~~~s~~r~~~~G~~~l~v~n~t~l~~~~ 400 (427)
T PLN02533 369 -------------IDPKPDISLFREASFGHGQLNVVDANTMEWTW 400 (427)
T ss_pred -------------CCCCCCceeEEeccCCEEEEEEEcCCeEEEEE
Confidence 14678999999999999999999999999985
No 3
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=100.00 E-value=5.5e-45 Score=363.19 Aligned_cols=260 Identities=47% Similarity=0.789 Sum_probs=205.9
Q ss_pred CCcEEEEEecCCCC-CChHHHHHHHHH--cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHh
Q 039280 171 YPNRIAVVGDLGLT-YNTTTTVAHLMS--NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRY 247 (487)
Q Consensus 171 ~~~~f~v~gD~~~~-~~~~~~l~~l~~--~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~ 247 (487)
.++||+++||+|.. .....++++|.+ .+|||||++||++|+++.. .+.+|+.|++.
T Consensus 3 ~~~~f~v~gD~~~~~~~~~~~~~~l~~~~~~~d~vl~~GDl~~~~~~~---------------------~~~~~~~~~~~ 61 (294)
T cd00839 3 TPFKFAVFGDMGQNTNNSTNTLDHLEKELGNYDAILHVGDLAYADGYN---------------------NGSRWDTFMRQ 61 (294)
T ss_pred CcEEEEEEEECCCCCCCcHHHHHHHHhccCCccEEEEcCchhhhcCCc---------------------cchhHHHHHHH
Confidence 37999999999973 456778888887 6899999999999864220 12578999999
Q ss_pred hhccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccC---CCChHHHHH
Q 039280 248 MQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDY---DKSSDQYKW 324 (487)
Q Consensus 248 ~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~---~~~~~Q~~W 324 (487)
++++.+.+|+++++||||............+..++.++........+.||+|++|++|||+|||+... ....+|++|
T Consensus 62 ~~~~~~~~P~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ysf~~g~v~fi~Lds~~~~~~~~~~~~q~~W 141 (294)
T cd00839 62 IEPLASYVPYMVTPGNHEADYNFSFYKIKAFFPRFRFPHSPSGSTSNLWYSFDVGPVHFVSLSTEVDFYGDGPGSPQYDW 141 (294)
T ss_pred HHHHHhcCCcEEcCcccccccCCCCcccccccccccccCCCCCCCCCceEEEeeCCEEEEEEecccccccCCCCcHHHHH
Confidence 99998899999999999997543221111111123334333334567899999999999999998765 568999999
Q ss_pred HHHHhcccCCCCCCeEEEEcCCCccccCCCCcc--hhHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCcc-----
Q 039280 325 LESDLGDVDREVTPWLIAAWHPPWYSTYSAHYR--EVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSL----- 397 (487)
Q Consensus 325 L~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~--~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~----- 397 (487)
|+++|+++++++.||+||++|+|+|+....... .....++.|++||++|+|+++|+||+|.|+|++|++++++
T Consensus 142 L~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~l~~ll~~~~v~~vl~GH~H~y~r~~p~~~~~~~~~~~ 221 (294)
T cd00839 142 LEADLAKVDRSKTPWIIVMGHRPMYCSNTDHDDCIEGEKMRAALEDLFYKYGVDLVLSGHVHAYERTCPVYNGTVVGDCN 221 (294)
T ss_pred HHHHHHHhcccCCCeEEEEeccCcEecCccccccchhHHHHHHHHHHHHHhCCCEEEEccceeeEeechhhCCEeccccc
Confidence 999999987667799999999999986543322 2456789999999999999999999999999999988653
Q ss_pred ---CCCCcEEEEeCCccccCCcccccCCCCCCCCCCCCCCCCCCccccccccCCCCCCcccCCCCCccceecCCcceEEE
Q 039280 398 ---DPCGPVYILVGDGGNVEGLDIVHADEPGNCPEPSTTPDMGGSCAFNFTSGPASGKFCWDRQPDYSAYRESSFGHGIL 474 (487)
Q Consensus 398 ---~~~g~vyIv~G~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~G~~~l 474 (487)
+++|++||++|+||+.+...... .+.++|++++...|||++|
T Consensus 222 ~~~~~~g~~yiv~G~~G~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~g~~~~ 266 (294)
T cd00839 222 PYSNPKGPVHIVIGAGGNDEGLDPFS-----------------------------------APPPAWSAFRESDYGFGRL 266 (294)
T ss_pred cccCCCccEEEEECCCccccCcCccc-----------------------------------CCCCCceEEEeccCCEEEE
Confidence 68899999999999976543100 1225899999999999999
Q ss_pred EEEccceeEEee
Q 039280 475 EVLISLSIALTT 486 (487)
Q Consensus 475 ~~~n~t~~~~~~ 486 (487)
+|.|.|||.||.
T Consensus 267 ~~~~~t~l~~~~ 278 (294)
T cd00839 267 TVHNSTHLHFEW 278 (294)
T ss_pred EEEecCeEEEEE
Confidence 999999999985
No 4
>cd07378 MPP_ACP5 Homo sapiens acid phosphatase 5 and related proteins, metallophosphatase domain. Acid phosphatase 5 (ACP5) removes the mannose 6-phosphate recognition marker from lysosomal proteins. The exact site of dephosphorylation is not clear. Evidence suggests dephosphorylation may take place in a prelysosomal compartment as well as in the lysosome. ACP5 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site ma
Probab=100.00 E-value=2.8e-31 Score=262.26 Aligned_cols=240 Identities=23% Similarity=0.363 Sum_probs=168.9
Q ss_pred cEEEEEecCCCCC-C-hHHH---HHHHH-HcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHH-HHHH
Q 039280 173 NRIAVVGDLGLTY-N-TTTT---VAHLM-SNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRW-DYWG 245 (487)
Q Consensus 173 ~~f~v~gD~~~~~-~-~~~~---l~~l~-~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w-~~~~ 245 (487)
++|+++||+|... . ...+ +.++. +.+|||||++||++|+++.... +..+| +.|.
T Consensus 1 ~~f~~~gD~g~~~~~~~~~~~~~~~~~~~~~~~dfvv~~GD~~y~~g~~~~-------------------~~~~~~~~~~ 61 (277)
T cd07378 1 LRFLALGDWGGGGTAGQKAVAKAMAKVAAELGPDFILSLGDNFYDDGVGSV-------------------DDPRFETTFE 61 (277)
T ss_pred CeEEEEeecCCCCCHHHHHHHHHHHHHHHhcCCCEEEeCCCccccCCCCCC-------------------cchHHHHHHH
Confidence 4899999999862 2 2222 33333 3689999999999997543110 01233 3455
Q ss_pred HhhhccccCCCEEEecCCcccccCccch-hhHH--hhcccCCCCCCCCCCCcceEEEEeC------CEEEEEEcCcccC-
Q 039280 246 RYMQPLVSNVPTMVIEGEHEIERQAENQ-TFAA--YSSRFAFPSEESGSSSSLYYSFNAG------GIHFVMLSAYIDY- 315 (487)
Q Consensus 246 ~~~~~l~~~~P~~~v~GNHD~~~~~~~~-~~~~--y~~~f~~P~~~~~~~~~~yYsf~~g------~v~fi~Ldt~~~~- 315 (487)
+.++.+..++|+++++||||........ .+.. +..++.+ ...||+|+++ +++||+|||....
T Consensus 62 ~~~~~~~~~~P~~~v~GNHD~~~~~~~~~~~~~~~~~~~~~~--------~~~~y~~~~~~~~~~~~~~~i~LDt~~~~~ 133 (277)
T cd07378 62 DVYSAPSLQVPWYLVLGNHDYSGNVSAQIDYTKRPNSPRWTM--------PAYYYRVSFPFPSSDTTVEFIMIDTVPLCG 133 (277)
T ss_pred HHccchhhcCCeEEecCCcccCCCchheeehhccCCCCCccC--------cchheEEEeecCCCCCEEEEEEEeChhHcC
Confidence 5555555689999999999997432110 0111 1222333 3469999998 7999999997532
Q ss_pred --------------CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeC
Q 039280 316 --------------DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNG 381 (487)
Q Consensus 316 --------------~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsG 381 (487)
....+|++||+++|+++. .+|+||++|+|+++..... .....++.|++++++++|+++|+|
T Consensus 134 ~~~~~~~~~~~~~~~~~~~Q~~wL~~~L~~~~---~~~~iv~~H~P~~~~~~~~--~~~~~~~~l~~l~~~~~v~~vl~G 208 (277)
T cd07378 134 NSDDIASPYGPPNGKLAEEQLAWLEKTLAAST---ADWKIVVGHHPIYSSGEHG--PTSCLVDRLLPLLKKYKVDAYLSG 208 (277)
T ss_pred ccccccccccCcchhhHHHHHHHHHHHHHhcC---CCeEEEEeCccceeCCCCC--CcHHHHHHHHHHHHHcCCCEEEeC
Confidence 136899999999999863 3799999999999764322 224568899999999999999999
Q ss_pred ccccceecccccCCccCCCCcEEEEeCCccccCCcccccCCCCCCCCCCCCCCCCCCccccccccCCCCCCcccCCCCCc
Q 039280 382 HVHAYERSNRVYNYSLDPCGPVYILVGDGGNVEGLDIVHADEPGNCPEPSTTPDMGGSCAFNFTSGPASGKFCWDRQPDY 461 (487)
Q Consensus 382 H~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (487)
|.|.+++..+ ...|+.||++|+||...+.... . ...+|+|
T Consensus 209 H~H~~~~~~~------~~~~~~~i~~G~~~~~~~~~~~---------~-------------------------~~~~~~~ 248 (277)
T cd07378 209 HDHNLQHIKD------DGSGTSFVVSGAGSKARPSVKH---------I-------------------------DKVPQFF 248 (277)
T ss_pred Ccccceeeec------CCCCcEEEEeCCCcccCCCCCc---------c-------------------------Ccccccc
Confidence 9999998853 2369999999999886543210 0 0123578
Q ss_pred cceecCCcceEEEEEEccceeEEe
Q 039280 462 SAYRESSFGHGILEVLISLSIALT 485 (487)
Q Consensus 462 s~~r~~~~G~~~l~~~n~t~~~~~ 485 (487)
+.++...+||.+|+|.+. +|.++
T Consensus 249 ~~~~~~~~Gy~~i~v~~~-~l~~~ 271 (277)
T cd07378 249 SGFTSSGGGFAYLELTKE-ELTVR 271 (277)
T ss_pred cccccCCCCEEEEEEecC-EEEEE
Confidence 999999999999999876 56654
No 5
>PTZ00422 glideosome-associated protein 50; Provisional
Probab=99.97 E-value=1.5e-30 Score=261.89 Aligned_cols=237 Identities=19% Similarity=0.282 Sum_probs=169.7
Q ss_pred CcEEEEEecCCCCCChHHHHHHHH-----HcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHH-HH
Q 039280 172 PNRIAVVGDLGLTYNTTTTVAHLM-----SNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDY-WG 245 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~~~~~l~~l~-----~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~-~~ 245 (487)
.++|+++||+|.+...+..+++.+ +.++||||.+||+. .+|.. + ...++|++ |.
T Consensus 26 ~l~F~~vGDwG~g~~~Q~~VA~~M~~~~~~~~~~FVls~GDNF-~~Gv~--s-----------------v~Dp~f~~~FE 85 (394)
T PTZ00422 26 QLRFASLGNWGTGSKQQKLVASYLKQYAKNERVTFLVSPGSNF-PGGVD--G-----------------LNDPKWKHCFE 85 (394)
T ss_pred eEEEEEEecCCCCchhHHHHHHHHHHHHHhCCCCEEEECCccc-cCCCC--C-----------------ccchhHHhhHh
Confidence 689999999997655554444332 35899999999998 44431 1 11356655 44
Q ss_pred Hhhhccc--cCCCEEEecCCcccccCccchh--hH------------H------hhcccCCCCCCCCCCCcceEEE----
Q 039280 246 RYMQPLV--SNVPTMVIEGEHEIERQAENQT--FA------------A------YSSRFAFPSEESGSSSSLYYSF---- 299 (487)
Q Consensus 246 ~~~~~l~--~~~P~~~v~GNHD~~~~~~~~~--~~------------~------y~~~f~~P~~~~~~~~~~yYsf---- 299 (487)
+...... ..+||++++||||+.++...+- +. . ...||.||. .||.+
T Consensus 86 ~vY~~~s~~L~~Pwy~vLGNHDy~Gn~~AQi~r~~~~y~~~~~~~~~~y~~~~~~~~RW~mP~--------~yY~~~~~f 157 (394)
T PTZ00422 86 NVYSEESGDMQIPFFTVLGQADWDGNYNAELLKGQNVYLNGHGQTDIEYDSNNDIYPKWIMPN--------YWYHYFTHF 157 (394)
T ss_pred hhccCcchhhCCCeEEeCCcccccCCchhhhccccccccccccccccccccccccCCCccCCc--------hhheeeeee
Confidence 4444443 5799999999999975543211 10 0 124777774 47754
Q ss_pred Ee-------------CCEEEEEEcCccc-----C-CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhH
Q 039280 300 NA-------------GGIHFVMLSAYID-----Y-DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVE 360 (487)
Q Consensus 300 ~~-------------g~v~fi~Ldt~~~-----~-~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~ 360 (487)
.. ..+.||+|||..- + .....|++||+++|+.+ ++.++|+||++|||+|+++.. ....
T Consensus 158 ~~~~~~~~~~~~~~~~~v~fifiDT~~l~~~~~~~~~~~~~w~~L~~~L~~a-~k~a~WkIVvGHhPIySsG~h--g~~~ 234 (394)
T PTZ00422 158 TDTSGPSLLKSGHKDMSVAFIFIDTWILSSSFPYKKVSERAWQDLKATLEYA-PKIADYIIVVGDKPIYSSGSS--KGDS 234 (394)
T ss_pred ecccccccccccCCCCEEEEEEEECchhcccCCccccCHHHHHHHHHHHHhh-ccCCCeEEEEecCceeecCCC--CCCH
Confidence 22 1289999999632 1 12578999999999654 356789999999999987642 2345
Q ss_pred HHHHHHHHHHHHcCCcEEEeCccccceecccccCCccCCCCcEEEEeCCccccCCcccccCCCCCCCCCCCCCCCCCCcc
Q 039280 361 CMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGNVEGLDIVHADEPGNCPEPSTTPDMGGSC 440 (487)
Q Consensus 361 ~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (487)
++++.|+|||++|+||++|+||+|++||.. +.|+.||++|+||...+...
T Consensus 235 ~L~~~L~PLL~ky~VdlYisGHDH~lq~i~--------~~gt~yIvSGaGs~~~~~~~---------------------- 284 (394)
T PTZ00422 235 YLSYYLLPLLKDAQVDLYISGYDRNMEVLT--------DEGTAHINCGSGGNSGRKSI---------------------- 284 (394)
T ss_pred HHHHHHHHHHHHcCcCEEEEccccceEEec--------CCCceEEEeCccccccCCCC----------------------
Confidence 789999999999999999999999999973 46899999999998543210
Q ss_pred ccccccCCCCCCcccCCCCCccceecCCcceEEEEEEccceeEEee
Q 039280 441 AFNFTSGPASGKFCWDRQPDYSAYRESSFGHGILEVLISLSIALTT 486 (487)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~s~~r~~~~G~~~l~~~n~t~~~~~~ 486 (487)
...+|+.|....+||..++ .+.+.|.++-
T Consensus 285 ----------------~~~~~s~F~~~~~GF~~~~-l~~~~l~~~f 313 (394)
T PTZ00422 285 ----------------MKNSKSLFYSEDIGFCIHE-LNAEGMVTKF 313 (394)
T ss_pred ----------------CCCCCcceecCCCCEEEEE-EecCEEEEEE
Confidence 1136788998999999999 6777777653
No 6
>cd07395 MPP_CSTP1 Homo sapiens CSTP1 and related proteins, metallophosphatase domain. CSTP1 (complete S-transactivated protein 1) is an uncharacterized Homo sapiens protein with a metallophosphatase domain, that is transactivated by the complete S protein of hepatitis B virus. CSTP1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is th
Probab=99.95 E-value=7.7e-27 Score=228.81 Aligned_cols=205 Identities=21% Similarity=0.337 Sum_probs=147.7
Q ss_pred CCcEEEEEecCCCCCC-----------------hHHHHHHHHHc--CCCEEEEcCccccccccccCCCccccccccCCCC
Q 039280 171 YPNRIAVVGDLGLTYN-----------------TTTTVAHLMSN--HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIES 231 (487)
Q Consensus 171 ~~~~f~v~gD~~~~~~-----------------~~~~l~~l~~~--~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~ 231 (487)
.+++|+++||+|.+.. ....++.+.+. +||||+++||+++.. ..
T Consensus 3 ~~~~f~~~sD~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~pd~ii~~GDl~~~~------~~----------- 65 (262)
T cd07395 3 GPFYFIQGADPQLGLIKKNLEGGGDEWDEEIKLTEQAVQAINKLNPKPKFVVVCGDLVNAM------PG----------- 65 (262)
T ss_pred CCEEEEEecCCccchhhccccCchhhhhhHHHHHHHHHHHHHhcCCCCCEEEEeCCcCCCC------cc-----------
Confidence 3799999999998731 12334555555 899999999999631 10
Q ss_pred cccchhhHHHHHHHHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcC
Q 039280 232 PIQETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSA 311 (487)
Q Consensus 232 ~~~~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt 311 (487)
.+....+|+.+.+.++.+...+|+++++||||+........+..|...| +..||+|++++++||+|||
T Consensus 66 --~~~~~~~~~~~~~~~~~~~~~vp~~~i~GNHD~~~~~~~~~~~~f~~~~----------g~~~y~~~~~~~~~i~lds 133 (262)
T cd07395 66 --DELRERQVSDLKDVLSLLDPDIPLVCVCGNHDVGNTPTEESIKDYRDVF----------GDDYFSFWVGGVFFIVLNS 133 (262)
T ss_pred --hhhHHHHHHHHHHHHhhccCCCcEEEeCCCCCCCCCCChhHHHHHHHHh----------CCcceEEEECCEEEEEecc
Confidence 0111245777777777776789999999999986433222334444444 2358999999999999999
Q ss_pred cccC------CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCc----chhHHHHHHHHHHHHHcCCcEEEeC
Q 039280 312 YIDY------DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHY----REVECMRVEMEDLLYYYGVDIVFNG 381 (487)
Q Consensus 312 ~~~~------~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~----~~~~~~r~~l~~l~~~~~VdlvlsG 381 (487)
.... ....+|++||+++|+++.+.+.+++||++|+|++....... ......++.|.++|++++|+++|||
T Consensus 134 ~~~~~~~~~~~~~~~ql~WL~~~L~~~~~~~~~~~iv~~H~P~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~V~~v~~G 213 (262)
T cd07395 134 QLFFDPSEVPELAQAQDVWLEEQLEIAKESDCKHVIVFQHIPWFLEDPDEEDSYFNIPKSVRKPLLDKFKKAGVKAVFSG 213 (262)
T ss_pred ccccCccccccchHHHHHHHHHHHHHHHhccCCcEEEEECcCCccCCCCCCcccCCcCHHHHHHHHHHHHhcCceEEEEC
Confidence 6432 23579999999999987534556899999999986432211 1224567899999999999999999
Q ss_pred ccccceecccccCCccCCCCcEEEEeCCccc
Q 039280 382 HVHAYERSNRVYNYSLDPCGPVYILVGDGGN 412 (487)
Q Consensus 382 H~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~ 412 (487)
|+|.+.+.. -.|+.+++++++|.
T Consensus 214 H~H~~~~~~--------~~g~~~~~~~~~~~ 236 (262)
T cd07395 214 HYHRNAGGR--------YGGLEMVVTSAIGA 236 (262)
T ss_pred ccccCCceE--------ECCEEEEEcCceec
Confidence 999987642 24788888888776
No 7
>PF09423 PhoD: PhoD-like phosphatase; InterPro: IPR018946 This entry contains a number of putative proteins as well as Alkaline phosphatase D which catalyses the reaction: A phosphate monoester + H(2)O = an alcohol + phosphate ; PDB: 2YEQ_B.
Probab=99.92 E-value=1.2e-23 Score=221.70 Aligned_cols=261 Identities=24% Similarity=0.344 Sum_probs=140.1
Q ss_pred cCcEEEEEeCCCCCCCEEEEEEecCCCCCcCceEEEEcCCCCCCCCCCcEEEEEecCCCCCChHHHHHHHHH-cCCCEEE
Q 039280 125 SGIIHHVLITGLQPNTLYEYECGDPSISAMSSSHYFRTMPVSGPSDYPNRIAVVGDLGLTYNTTTTVAHLMS-NHPDLLL 203 (487)
Q Consensus 125 ~~~~h~v~l~gL~P~T~Y~Y~vg~~~~~~~s~~~~F~T~p~~~~~~~~~~f~v~gD~~~~~~~~~~l~~l~~-~~pdfvl 203 (487)
..+++++.|+||+|+|+|+|||........|...+|+|+|.... .++||+++||.+.......++.+|.+ .+|||+|
T Consensus 60 ~d~t~~v~v~gL~p~t~Y~Y~~~~~~~~~~s~~g~~rT~p~~~~--~~~r~a~~SC~~~~~~~~~~~~~~a~~~~~D~~l 137 (453)
T PF09423_consen 60 RDFTVKVDVTGLQPGTRYYYRFVVDGGGQTSPVGRFRTAPDGDP--DPFRFAFGSCQNYEDGYFPAYRRIAERDDPDFVL 137 (453)
T ss_dssp GTTEEEEEE-S--TT-EEEEEEEE--TTEE---EEEE--TT-------EEEEEE----CCC---HHHHHHTT-S--SEEE
T ss_pred CCeEeecccCCCCCCceEEEEEEEecCCCCCCceEEEcCCCCCC--CceEEEEECCCCcccChHHHHHhhhccCCCcEEE
Confidence 45899999999999999999999854357888999999976543 36999999999876556778888888 6999999
Q ss_pred EcCccccccccccCCC--ccccccccC--CCCcccchhhHHHHHHH--HhhhccccCCCEEEecCCcccccCccc-----
Q 039280 204 LIGDLSYADLYLTNGT--KSSCYLCQS--IESPIQETYQPRWDYWG--RYMQPLVSNVPTMVIEGEHEIERQAEN----- 272 (487)
Q Consensus 204 ~~GDl~y~d~~~~~g~--~~~~~~~~~--~~~~~~~~y~~~w~~~~--~~~~~l~~~~P~~~v~GNHD~~~~~~~----- 272 (487)
|+||.+|+|....-+. .....+... ......+.|+.+|..+. ..++.+.+.+|+++++.+||+.++...
T Consensus 138 ~lGD~IY~d~~~~~~~~~~~~~~r~~~p~~~~~~l~~yR~~y~~~~~~p~l~~~~~~~P~~~iwDDHdi~nn~~~~~~~~ 217 (453)
T PF09423_consen 138 HLGDQIYEDGGGGYGNLSRRPIGRAPEPAHEAETLDDYRRRYRQYRSDPDLRRLHANVPWIMIWDDHDIGNNWWGDGAEN 217 (453)
T ss_dssp E-S-SS----TTSS--TT---S-----SSSS--SHHHHHHHHHHHHT-HHHHHHHHHSEEEE---STTTSTT-BTTB-ST
T ss_pred EeCCeeeccCCcccccccccccccccccccccccHHHHHHHHHHHcCCHHHHHHhhcccEEEEccCceecccccCCcccc
Confidence 9999999874100000 000000000 01223445666666543 236677789999999999999765431
Q ss_pred -----h--------hhHHhhcccCCCCCC-CCCCCcceEEEEeCC-EEEEEEcCcccCC---------------------
Q 039280 273 -----Q--------TFAAYSSRFAFPSEE-SGSSSSLYYSFNAGG-IHFVMLSAYIDYD--------------------- 316 (487)
Q Consensus 273 -----~--------~~~~y~~~f~~P~~~-~~~~~~~yYsf~~g~-v~fi~Ldt~~~~~--------------------- 316 (487)
. .+..|....+..... .......|++|++|+ +.|++||+....+
T Consensus 218 ~~~~~~~~~~~~~~a~~ay~e~~p~r~~~~~~~~~~~y~~~~~G~~~~~~~LD~R~~R~~~~~~~~~~~~~~~~~~~~~m 297 (453)
T PF09423_consen 218 HQDTSGDFQDRRRAAYQAYFEYQPVRNPDPPGDQGRIYRSFRYGDLVEFFMLDTRSYRSPPPCDGPGDTCPAADDPSRTM 297 (453)
T ss_dssp T---HHHHHHHHHHHHHHHHHHS---GGG-BTTB----EEEEETTTEEEEE--SSSS----CCCSSEE--HHHH-TT--S
T ss_pred ccccccchHHHHHHHHHHHHhhcCccCCCccCCCCceEEEEecCCceeEEEEechhccccccccccccccccccCCccCc
Confidence 0 112233322221111 112356789999999 9999999864321
Q ss_pred CChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccC-----------CCCcchhHHHHHHHHHHHHHcCCc--EEEeCcc
Q 039280 317 KSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTY-----------SAHYREVECMRVEMEDLLYYYGVD--IVFNGHV 383 (487)
Q Consensus 317 ~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~-----------~~~~~~~~~~r~~l~~l~~~~~Vd--lvlsGH~ 383 (487)
.+.+|++||++.|++ +.++|+|+..-.|+.... ...+......|++|.++|.+.++. ++|+|.+
T Consensus 298 LG~~Q~~wL~~~L~~---s~a~~kvi~s~v~~~~~~~~~~~~~~~~~~d~W~g~~~er~~Ll~~l~~~~~~~vV~LSGDv 374 (453)
T PF09423_consen 298 LGEEQWDWLEDWLAS---SQATWKVIGSSVPFSPLNFPDAAEGLPFNMDSWDGYPAERQRLLDFLRESGIRNVVFLSGDV 374 (453)
T ss_dssp S-HHHHHHHHHHHHH-----SSEEEEE-SS--S---SS-SS-S--EETTSGGGSHHHHHHHHHHHHHTT---EEEEE-SS
T ss_pred CCHHHHHHHHHHHhc---CCCcEEEEEeCCceecccccccccccccCCCchhhCHHHHHHHHHHHHhhCCCCEEEEecCc
Confidence 378999999999998 458999999988865432 123344556689999999998875 7799999
Q ss_pred ccceecc
Q 039280 384 HAYERSN 390 (487)
Q Consensus 384 H~yeR~~ 390 (487)
|......
T Consensus 375 H~~~~~~ 381 (453)
T PF09423_consen 375 HASAASR 381 (453)
T ss_dssp SSEEEEE
T ss_pred chheeee
Confidence 9887663
No 8
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=99.92 E-value=1.1e-23 Score=203.52 Aligned_cols=192 Identities=20% Similarity=0.303 Sum_probs=135.6
Q ss_pred EEEEEecCCCCCCh-------------HHHHHHHHHc--CCCEEEEcCccccccccccCCCccccccccCCCCcccchhh
Q 039280 174 RIAVVGDLGLTYNT-------------TTTVAHLMSN--HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQ 238 (487)
Q Consensus 174 ~f~v~gD~~~~~~~-------------~~~l~~l~~~--~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~ 238 (487)
||++++|+|.+... .++++.+.+. +||+||++||+++. +. .
T Consensus 1 r~~~iSDlH~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~d~vi~~GDl~~~------~~------------------~ 56 (240)
T cd07402 1 LLAQISDLHLRADGEGALLGVDTAASLEAVLAHINALHPRPDLVLVTGDLTDD------GS------------------P 56 (240)
T ss_pred CEEEEeCCccCCCCcceecCcCHHHHHHHHHHHHHhcCCCCCEEEECccCCCC------CC------------------H
Confidence 69999999987431 2345555565 89999999999953 21 1
Q ss_pred HHHHHHHHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccC---
Q 039280 239 PRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDY--- 315 (487)
Q Consensus 239 ~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~--- 315 (487)
..|+.+.+.++.+ .+|++.++||||... . +...|..... .....+|+|+.++++||+||+....
T Consensus 57 ~~~~~~~~~l~~~--~~p~~~v~GNHD~~~-----~---~~~~~~~~~~---~~~~~~~~~~~~~~~~i~lds~~~~~~~ 123 (240)
T cd07402 57 ESYERLRELLAAL--PIPVYLLPGNHDDRA-----A---MRAVFPELPP---APGFVQYVVDLGGWRLILLDSSVPGQHG 123 (240)
T ss_pred HHHHHHHHHHhhc--CCCEEEeCCCCCCHH-----H---HHHhhccccc---cccccceeEecCCEEEEEEeCCCCCCcC
Confidence 3455666666665 789999999999841 1 2222211100 1245688999999999999986532
Q ss_pred -CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcch-hHHHHHHHHHHHHHc-CCcEEEeCccccceecccc
Q 039280 316 -DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYRE-VECMRVEMEDLLYYY-GVDIVFNGHVHAYERSNRV 392 (487)
Q Consensus 316 -~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~-~~~~r~~l~~l~~~~-~VdlvlsGH~H~yeR~~p~ 392 (487)
....+|++||++.|++.. ..++|+++|+|++......... ....++.+.+++.++ +|+++|+||+|.....
T Consensus 124 ~~~~~~ql~wL~~~L~~~~---~~~~il~~H~pp~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~~GH~H~~~~~--- 197 (240)
T cd07402 124 GELCAAQLDWLEAALAEAP---DKPTLVFLHHPPFPVGIAWMDAIGLRNAEALAAVLARHPNVRAILCGHVHRPIDG--- 197 (240)
T ss_pred CEECHHHHHHHHHHHHhCC---CCCEEEEECCCCccCCchhhhhhhCCCHHHHHHHHhcCCCeeEEEECCcCchHHe---
Confidence 236899999999999864 2358899999987643211111 111267899999999 9999999999987655
Q ss_pred cCCccCCCCcEEEEeCCcccc
Q 039280 393 YNYSLDPCGPVYILVGDGGNV 413 (487)
Q Consensus 393 ~~~~~~~~g~vyIv~G~gG~~ 413 (487)
..+|+.++++|+.|..
T Consensus 198 -----~~~g~~~~~~gs~~~~ 213 (240)
T cd07402 198 -----SWGGIPLLTAPSTCHQ 213 (240)
T ss_pred -----EECCEEEEEcCcceee
Confidence 2378899999998874
No 9
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.91 E-value=1.6e-23 Score=205.75 Aligned_cols=198 Identities=19% Similarity=0.276 Sum_probs=136.2
Q ss_pred cEEEEEecCCCCCC--------------hHHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhh
Q 039280 173 NRIAVVGDLGLTYN--------------TTTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQ 238 (487)
Q Consensus 173 ~~f~v~gD~~~~~~--------------~~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~ 238 (487)
|||++++|+|.... ..++++.+++.+||+||++||+++. +.. ..+
T Consensus 1 ~r~~~iSD~H~~~~~~~~~~~~~~~~~~l~~~i~~i~~~~~d~vv~~GDlv~~------~~~---------------~~~ 59 (267)
T cd07396 1 FRFGIIADIQYADEDDTRPRYYRNSLEKLEEAVEEWNRESLDFVVQLGDIIDG------DNA---------------RAE 59 (267)
T ss_pred CeEEEEeccccccCCCcccchHHHhHHHHHHHHHHHHcCCCCEEEECCCeecC------CCc---------------hHH
Confidence 69999999995532 1234566666789999999999953 110 012
Q ss_pred HHHHHHHHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCccc----
Q 039280 239 PRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYID---- 314 (487)
Q Consensus 239 ~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~---- 314 (487)
..|+.+.+.++.+ .+|+++++||||...... .+.. +... ...+..||+|++++++||+||+...
T Consensus 60 ~~~~~~~~~l~~l--~~p~~~v~GNHD~~~~~~-----~~~~-~~~~----~~~~~~yysf~~~~~~~i~lds~~~~~~~ 127 (267)
T cd07396 60 EALDAVLAILDRL--KGPVHHVLGNHDLYNPSR-----EYLL-LYTL----LGLGAPYYSFSPGGIRFIVLDGYDISALG 127 (267)
T ss_pred HHHHHHHHHHHhc--CCCEEEecCccccccccH-----hhhh-cccc----cCCCCceEEEecCCcEEEEEeCCcccccc
Confidence 4556666666554 589999999999863321 1111 0001 1234569999999999999998531
Q ss_pred ------------------------------CCCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHH
Q 039280 315 ------------------------------YDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRV 364 (487)
Q Consensus 315 ------------------------------~~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~ 364 (487)
.....+|++||+++|+++..+. .++||++|+|++...... ......++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~~~Ql~WL~~~L~~~~~~~-~~viV~~Hhp~~~~~~~~-~~~~~~~~ 205 (267)
T cd07396 128 RPEDTPKAENADDNSNLGLYLSEPRFVDWNGGIGEEQLQWLRNELQEADANG-EKVIIFSHFPLHPESTSP-HGLLWNHE 205 (267)
T ss_pred CCCCChhhhhHHHhchhhhhccCccceeccCcCCHHHHHHHHHHHHHHHhcC-CeEEEEEeccCCCCCCCc-cccccCHH
Confidence 1235899999999999864332 358999999987643211 11111257
Q ss_pred HHHHHHHHc-CCcEEEeCccccceecccccCCccCCCCcEEEEeCCcccc
Q 039280 365 EMEDLLYYY-GVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGNV 413 (487)
Q Consensus 365 ~l~~l~~~~-~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~~ 413 (487)
.+.++++++ +|+++|+||+|.++... .+|+.|+++|+-...
T Consensus 206 ~~~~ll~~~~~V~~v~~GH~H~~~~~~--------~~gi~~~~~~a~~~~ 247 (267)
T cd07396 206 EVLSILRAYGCVKACISGHDHEGGYAQ--------RHGIHFLTLEGMVET 247 (267)
T ss_pred HHHHHHHhCCCEEEEEcCCcCCCCccc--------cCCeeEEEechhhcC
Confidence 788999996 79999999999997542 478999999887664
No 10
>COG3540 PhoD Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism]
Probab=99.89 E-value=3.1e-22 Score=200.38 Aligned_cols=313 Identities=21% Similarity=0.269 Sum_probs=206.2
Q ss_pred CceEEEeeccCC-CcEEEEEEcCCCCCCCCCCCCCCC-CCccEEEEeccCCCCceEEEEEEEEeeeecCCCCCCccccCc
Q 039280 50 PEQIFVSLSARY-DSVWISWITGEFQIGDNISPLDPE-LVQSIVYFRVFRSSLTYQAEGYSLVYNQLYPPDGLQNYTSGI 127 (487)
Q Consensus 50 P~qi~l~~~~~~-~~~~V~W~T~~~~~~~~~~~~~~~-~~~~~V~yg~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 127 (487)
|.--|=..++|| ..-.|-|.--++. |+... ...-.+|++++++--+.+..++..+ .....+
T Consensus 37 paF~~GVaSGDp~~~svviWTRl~P~------p~~~g~~v~V~wEvs~~~~f~~ivr~gt~~a-----------~p~~dh 99 (522)
T COG3540 37 PAFTHGVASGDPTATSVVIWTRLDPE------PLNGGRPVPVIWEVSTDENFSNIVRKGTVIA-----------SPELDH 99 (522)
T ss_pred CccccccccCCCCCCeEEEEEccCCc------cccCCCCcceEEEecCCccHHHHHhcCCccC-----------CcccCc
Confidence 433344445788 4577888776642 11111 1234567777765333332232210 112458
Q ss_pred EEEEEeCCCCCCCEEEEEEecCCCCCcCceEEEEcCCCCCCCCCCcEEEEEecC---CCCCChHHHHHHHHHcCCCEEEE
Q 039280 128 IHHVLITGLQPNTLYEYECGDPSISAMSSSHYFRTMPVSGPSDYPNRIAVVGDL---GLTYNTTTTVAHLMSNHPDLLLL 204 (487)
Q Consensus 128 ~h~v~l~gL~P~T~Y~Y~vg~~~~~~~s~~~~F~T~p~~~~~~~~~~f~v~gD~---~~~~~~~~~l~~l~~~~pdfvl~ 204 (487)
.+++.++||+|++.|+||+..+. ..|.+.+|||+|..+. .++|+.+||. |...+...+.+.|.+.+|||+||
T Consensus 100 tv~v~~~gL~P~~~yfYRf~~~~--~~spvGrtrTapa~~~---~i~~~~fa~ascQ~~~~gy~~aY~~ma~~~~D~viH 174 (522)
T COG3540 100 TVHVDLRGLSPDQDYFYRFKAGD--ERSPVGRTRTAPAPGR---AIRFVWFADASCQGWEIGYMTAYKTMAKEEPDFVIH 174 (522)
T ss_pred eEEEeccCCCCCceEEEEEeeCC--ccccccccccCCCCCC---cchhhhhhhccccccccchhHHHHHHHhcCCCEEEE
Confidence 89999999999999999998775 7789999999999865 3555555555 44445667888899999999999
Q ss_pred cCccccccccccCCCccccccc----cCC--CCcccchhhHHHHHHH--HhhhccccCCCEEEecCCcccccCccc----
Q 039280 205 IGDLSYADLYLTNGTKSSCYLC----QSI--ESPIQETYQPRWDYWG--RYMQPLVSNVPTMVIEGEHEIERQAEN---- 272 (487)
Q Consensus 205 ~GDl~y~d~~~~~g~~~~~~~~----~~~--~~~~~~~y~~~w~~~~--~~~~~l~~~~P~~~v~GNHD~~~~~~~---- 272 (487)
+||.+|+++...........+. ..+ .....+.|+.+|..++ ..++...+..|+++.+.+||+.+++..
T Consensus 175 ~GDyIYeyg~~~~~~~~~~~~~~~~~~~~~~ei~TLddYR~rya~y~~D~nLqaahA~~Pwi~~WDDHEv~NN~~~~~~~ 254 (522)
T COG3540 175 LGDYIYEYGPIPDEVSLNSWKNVVVTQHKSKEIETLDDYRGRYAYYKTDENLQAAHAAFPWIVQWDDHEVANNWSNSIDE 254 (522)
T ss_pred cCCeeeccCCcccccccccccccccCCCCCcceeeHHHHhhHHhhhcccHHHHHhhccCCEEEEeccccccccccccccc
Confidence 9999998754211000000000 000 1234567888887654 347777889999999999999876421
Q ss_pred -------h--------hhHHhhcccCCCCCCCC--CCCcceEEEEeCC-EEEEEEcCcccC------C------------
Q 039280 273 -------Q--------TFAAYSSRFAFPSEESG--SSSSLYYSFNAGG-IHFVMLSAYIDY------D------------ 316 (487)
Q Consensus 273 -------~--------~~~~y~~~f~~P~~~~~--~~~~~yYsf~~g~-v~fi~Ldt~~~~------~------------ 316 (487)
+ .+++|.+ .||..... .....|.+|.+|+ +.|.+||+..+. +
T Consensus 255 nD~~~~~k~~~~r~a~A~qAyyE--~mPiR~~~~p~~~~lYR~~tyG~La~~~~LDtR~YR~dqp~~dg~~~~~q~~~~~ 332 (522)
T COG3540 255 NDSRYDEKDFVLRAAAARQAYYE--HMPIRYSSLPTDGRLYRSFTYGPLADLFVLDTRSYRTDQPCGDGNPPNCQAVAGS 332 (522)
T ss_pred cCCCCChHHHHHHHHHHHHHHHH--hCccccccCCccceeeeeeccccccceeeeehhhhccccccCCCCcchhhhhhCc
Confidence 1 1223333 35544322 2357899999998 678999986543 1
Q ss_pred ----CChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccC---C----------CCcchhHHHHHHHHHHHHHcCCc--E
Q 039280 317 ----KSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTY---S----------AHYREVECMRVEMEDLLYYYGVD--I 377 (487)
Q Consensus 317 ----~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~---~----------~~~~~~~~~r~~l~~l~~~~~Vd--l 377 (487)
.+..|.+||+..|.+ +++.|+|+..-.|+--.. . +.+.....-|+.|..+++..++. +
T Consensus 333 ~~~mlG~~QeqWLk~~L~~---SkatWnVia~q~~~~~~~~d~~~a~~~~~a~~D~wdGy~~~RerLl~fi~~~~~~N~V 409 (522)
T COG3540 333 AATMLGEQQEQWLKRGLGA---SKATWNVIAQQMPLGLVVFDGSPATEGQEANADGWDGYPAGRERLLRFIADRKIRNTV 409 (522)
T ss_pred cccchhhHHHHHHHhhhhh---cchhhhhhhhhcceeEeecCCCccccCccccccCcCCCcccHHHHHHHHHhcCCCCcE
Confidence 278999999999998 678899999988863211 1 11122334588999999999875 8
Q ss_pred EEeCccccceec
Q 039280 378 VFNGHVHAYERS 389 (487)
Q Consensus 378 vlsGH~H~yeR~ 389 (487)
+|+|.+|...-.
T Consensus 410 ~LtgDvH~~wA~ 421 (522)
T COG3540 410 VLTGDVHYSWAH 421 (522)
T ss_pred EEechhHHHHHh
Confidence 899999975443
No 11
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2e-22 Score=188.01 Aligned_cols=203 Identities=21% Similarity=0.315 Sum_probs=134.8
Q ss_pred CCcEEEEEecCCCCCChH--HHH---HHHH-HcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHH-HH
Q 039280 171 YPNRIAVVGDLGLTYNTT--TTV---AHLM-SNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRW-DY 243 (487)
Q Consensus 171 ~~~~f~v~gD~~~~~~~~--~~l---~~l~-~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w-~~ 243 (487)
.+++|+++||+|...... .+. .+|. +.+.||||.+||.+|.+|..+.. .+++ +.
T Consensus 42 gslsflvvGDwGr~g~~nqs~va~qmg~ige~l~idfvlS~GDNfYd~G~~~~~-------------------Dp~Fq~s 102 (336)
T KOG2679|consen 42 GSLSFLVVGDWGRRGSFNQSQVALQMGEIGEKLDIDFVLSTGDNFYDTGLTSEN-------------------DPRFQDS 102 (336)
T ss_pred CceEEEEEcccccCCchhHHHHHHHHHhHHHhccceEEEecCCcccccCCCCCC-------------------ChhHHhh
Confidence 379999999999654322 222 2232 35899999999999987653221 1222 22
Q ss_pred HHHhhhccccCCCEEEecCCcccccCccch---hhHHhhcccCCCCCCCCCCCcceE--E--EE--eCCEEEEEEcCccc
Q 039280 244 WGRYMQPLVSNVPTMVIEGEHEIERQAENQ---TFAAYSSRFAFPSEESGSSSSLYY--S--FN--AGGIHFVMLSAYID 314 (487)
Q Consensus 244 ~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~---~~~~y~~~f~~P~~~~~~~~~~yY--s--f~--~g~v~fi~Ldt~~~ 314 (487)
|.+....-....||+.+.||||+.++...+ .+.....||..|.. || + .+ .-++.++++|+...
T Consensus 103 F~nIYT~pSLQkpWy~vlGNHDyrGnV~AQls~~l~~~d~RW~c~rs--------f~~~ae~ve~f~v~~~~f~~d~~~~ 174 (336)
T KOG2679|consen 103 FENIYTAPSLQKPWYSVLGNHDYRGNVEAQLSPVLRKIDKRWICPRS--------FYVDAEIVEMFFVDTTPFMDDTFTL 174 (336)
T ss_pred hhhcccCcccccchhhhccCccccCchhhhhhHHHHhhccceecccH--------Hhhcceeeeeeccccccchhhheec
Confidence 334333223356999999999998764432 23444556655431 22 1 11 11234444444221
Q ss_pred -------CC-------CChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEe
Q 039280 315 -------YD-------KSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFN 380 (487)
Q Consensus 315 -------~~-------~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~Vdlvls 380 (487)
+. ....++.||+..|++ +.++|+||++|+|+.+.. +.+...|+++.|.|||+.++||++++
T Consensus 175 ~~~~~ydw~~v~PR~~~~~~~l~~le~~L~~---S~a~wkiVvGHh~i~S~~--~HG~T~eL~~~LlPiL~~n~VdlY~n 249 (336)
T KOG2679|consen 175 CTDDVYDWRGVLPRVKYLRALLSWLEVALKA---SRAKWKIVVGHHPIKSAG--HHGPTKELEKQLLPILEANGVDLYIN 249 (336)
T ss_pred ccccccccccCChHHHHHHHHHHHHHHHHHH---hhcceEEEecccceehhh--ccCChHHHHHHHHHHHHhcCCcEEEe
Confidence 11 136788999999999 678899999999998753 44567899999999999999999999
Q ss_pred CccccceecccccCCccC-CCCcEEEEeCCccc
Q 039280 381 GHVHAYERSNRVYNYSLD-PCGPVYILVGDGGN 412 (487)
Q Consensus 381 GH~H~yeR~~p~~~~~~~-~~g~vyIv~G~gG~ 412 (487)
||+|+.|..- + ..++-|+++|+|..
T Consensus 250 GHDHcLQhis-------~~e~~iqf~tSGagSk 275 (336)
T KOG2679|consen 250 GHDHCLQHIS-------SPESGIQFVTSGAGSK 275 (336)
T ss_pred cchhhhhhcc-------CCCCCeeEEeeCCccc
Confidence 9999999873 3 34666777777654
No 12
>cd07401 MPP_TMEM62_N Homo sapiens TMEM62, N-terminal metallophosphatase domain. TMEM62 (transmembrane protein 62) is an uncharacterized Homo sapiens transmembrane protein with an N-terminal metallophosphatase domain. TMEM62 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=99.87 E-value=4.2e-21 Score=187.27 Aligned_cols=192 Identities=19% Similarity=0.233 Sum_probs=125.9
Q ss_pred EEEEecCCCCCCh--------HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHH
Q 039280 175 IAVVGDLGLTYNT--------TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGR 246 (487)
Q Consensus 175 f~v~gD~~~~~~~--------~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~ 246 (487)
|++++|+|.+... ...++.+.+.+||+|+++||++.. ....+. -...++.+|+.|.+
T Consensus 2 ~~~iSDlH~g~~~~~~~~~~~~~~~~~i~~~~pd~i~~~GD~~d~--~~~~~~-------------~~~~~~~~~~~~~~ 66 (256)
T cd07401 2 FVHISDIHVSSFHPPNRAQDETFCSNFIDVIKPALVLATGDLTDN--KTGNKL-------------PSYQYQEEWQKYYN 66 (256)
T ss_pred EEEecccccCCcCchhhhhHHHHHHHHHHhhCCCEEEEccccccc--cccCCC-------------cccccHHHHHHHHH
Confidence 7899999987541 113455666799999999999942 111111 01123567888888
Q ss_pred hhhccc--cCCCEEEecCCcccccCccchhhHHhhcccC-CCCCCCCCCCcceEE--EEeCCEEEEEEcCccc-------
Q 039280 247 YMQPLV--SNVPTMVIEGEHEIERQAENQTFAAYSSRFA-FPSEESGSSSSLYYS--FNAGGIHFVMLSAYID------- 314 (487)
Q Consensus 247 ~~~~l~--~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~-~P~~~~~~~~~~yYs--f~~g~v~fi~Ldt~~~------- 314 (487)
.+.... ...|++.++||||+.+.........|..+|. ... ....+|. ++.|+++||+|||...
T Consensus 67 ~~~~~~~~~~~p~~~v~GNHD~~~~~~~~~~~~~~~~y~~~~~-----~~~~~~~~~~~~~~~~~I~Ldt~~~~~~~~~~ 141 (256)
T cd07401 67 ILKESSVINKEKWFDIRGNHDLFNIPSLDSENNYYRKYSATGR-----DGSFSFSHTTRFGNYSFIGVDPTLFPGPKRPF 141 (256)
T ss_pred HHHHhCCCCcceEEEeCCCCCcCCCCCccchhhHHHHhheecC-----CCccceEEEecCCCEEEEEEcCccCCCCCCCC
Confidence 765542 3689999999999964332222222222221 111 1122333 3459999999999642
Q ss_pred ---CCCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceeccc
Q 039280 315 ---YDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNR 391 (487)
Q Consensus 315 ---~~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p 391 (487)
.....+|++||+++|++.. +.+++||++|+|++...... . ...+ .+.++|++++|+++||||.|.+++..|
T Consensus 142 ~~~g~l~~~ql~wL~~~L~~~~--~~~~~IV~~HhP~~~~~~~~-~--~~~~-~~~~ll~~~~v~~vl~GH~H~~~~~~p 215 (256)
T cd07401 142 NFFGSLDKKLLDRLEKELEKST--NSNYTIWFGHYPTSTIISPS-A--KSSS-KFKDLLKKYNVTAYLCGHLHPLGGLEP 215 (256)
T ss_pred ceeccCCHHHHHHHHHHHHhcc--cCCeEEEEEcccchhccCCC-c--chhH-HHHHHHHhcCCcEEEeCCccCCCccee
Confidence 2246899999999999753 34579999999986532211 1 1122 389999999999999999999999666
Q ss_pred c
Q 039280 392 V 392 (487)
Q Consensus 392 ~ 392 (487)
+
T Consensus 216 ~ 216 (256)
T cd07401 216 V 216 (256)
T ss_pred e
Confidence 5
No 13
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=99.86 E-value=2.6e-20 Score=183.83 Aligned_cols=191 Identities=18% Similarity=0.217 Sum_probs=122.0
Q ss_pred CcEEEEEecCCCCC---------C----hHHHHHHHHHc--CCCEEEEcCccccccccccCCCccccccccCCCCcccch
Q 039280 172 PNRIAVVGDLGLTY---------N----TTTTVAHLMSN--HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQET 236 (487)
Q Consensus 172 ~~~f~v~gD~~~~~---------~----~~~~l~~l~~~--~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~ 236 (487)
++||++++|+|... + ..++++++.+. +|||||++||++.. +.
T Consensus 14 ~~~i~~iSD~Hl~~~~~~~~~~~~~~~~l~~~i~~i~~~~~~~D~vvitGDl~~~------~~----------------- 70 (275)
T PRK11148 14 RVRILQITDTHLFADEHETLLGVNTWESYQAVLEAIRAQQHEFDLIVATGDLAQD------HS----------------- 70 (275)
T ss_pred CEEEEEEcCcccCCCCCCceeccCHHHHHHHHHHHHHhhCCCCCEEEECCCCCCC------CC-----------------
Confidence 79999999999632 1 12345555543 69999999999952 21
Q ss_pred hhHHHHHHHHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccC-
Q 039280 237 YQPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDY- 315 (487)
Q Consensus 237 y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~- 315 (487)
...+..+.+.++.+ .+|+++++||||... .+..+.....+ ...++.+..++++||+||+....
T Consensus 71 -~~~~~~~~~~l~~l--~~Pv~~v~GNHD~~~-----~~~~~~~~~~~--------~~~~~~~~~~~~~~i~Lds~~~g~ 134 (275)
T PRK11148 71 -SEAYQHFAEGIAPL--RKPCVWLPGNHDFQP-----AMYSALQDAGI--------SPAKHVLIGEHWQILLLDSQVFGV 134 (275)
T ss_pred -HHHHHHHHHHHhhc--CCcEEEeCCCCCChH-----HHHHHHhhcCC--------CccceEEecCCEEEEEecCCCCCC
Confidence 13345566666665 689999999999842 12222211111 11233344557999999996421
Q ss_pred ---CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcc-hhHHHHHHHHHHHHHc-CCcEEEeCccccceecc
Q 039280 316 ---DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYR-EVECMRVEMEDLLYYY-GVDIVFNGHVHAYERSN 390 (487)
Q Consensus 316 ---~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~-~~~~~r~~l~~l~~~~-~VdlvlsGH~H~yeR~~ 390 (487)
..+.+|++||+++|++... . .+||++|||+......+.. ......+.|.+++++| +|+++|+||+|.....
T Consensus 135 ~~G~l~~~ql~wL~~~L~~~~~--~-~~vv~~hH~P~~~~~~~~d~~~l~n~~~l~~ll~~~~~v~~vl~GH~H~~~~~- 210 (275)
T PRK11148 135 PHGELSEYQLEWLERKLADAPE--R-HTLVLLHHHPLPAGCAWLDQHSLRNAHELAEVLAKFPNVKAILCGHIHQELDL- 210 (275)
T ss_pred cCCEeCHHHHHHHHHHHhhCCC--C-CeEEEEcCCCCCCCcchhhccCCCCHHHHHHHHhcCCCceEEEecccChHHhc-
Confidence 2468999999999998632 2 2455555543332221111 0111246899999998 8999999999986443
Q ss_pred cccCCccCCCCcEEEEeCCccc
Q 039280 391 RVYNYSLDPCGPVYILVGDGGN 412 (487)
Q Consensus 391 p~~~~~~~~~g~vyIv~G~gG~ 412 (487)
...|+.++++++.+.
T Consensus 211 -------~~~gi~~~~~ps~~~ 225 (275)
T PRK11148 211 -------DWNGRRLLATPSTCV 225 (275)
T ss_pred -------eECCEEEEEcCCCcC
Confidence 246788888777665
No 14
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=99.82 E-value=1.1e-19 Score=172.51 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=107.2
Q ss_pred cEEEEEecCCCCCC-h----HHH----HHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHH
Q 039280 173 NRIAVVGDLGLTYN-T----TTT----VAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDY 243 (487)
Q Consensus 173 ~~f~v~gD~~~~~~-~----~~~----l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~ 243 (487)
|||++++|+|.... . .+. ++.+.+.+||+|+++||+++.. . ...+|+.
T Consensus 1 f~~~~~~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~d~iv~~GDl~~~~------~-----------------~~~~~~~ 57 (214)
T cd07399 1 FTLAVLPDTQYYTESYPEVFDAQTDWIVDNAEALNIAFVLHLGDIVDDG------D-----------------NDAEWEA 57 (214)
T ss_pred CEEEEecCCCcCCcCCHHHHHHHHHHHHHHHHHcCCCEEEECCCccCCC------C-----------------CHHHHHH
Confidence 68999999997543 1 122 3334456899999999999531 1 0246788
Q ss_pred HHHhhhccc-cCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCChHHH
Q 039280 244 WGRYMQPLV-SNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSSDQY 322 (487)
Q Consensus 244 ~~~~~~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~~Q~ 322 (487)
+.+.++.+. ..+|+++++||||. ++.+|+. ...+|+
T Consensus 58 ~~~~~~~l~~~~~p~~~~~GNHD~---------------------------------------~~~ld~~----~~~~ql 94 (214)
T cd07399 58 ADKAFARLDKAGIPYSVLAGNHDL---------------------------------------VLALEFG----PRDEVL 94 (214)
T ss_pred HHHHHHHHHHcCCcEEEECCCCcc---------------------------------------hhhCCCC----CCHHHH
Confidence 888888875 67999999999992 2333332 358999
Q ss_pred HHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcch-----hHHHHHHHHHHHHHc-CCcEEEeCccccceecc
Q 039280 323 KWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYRE-----VECMRVEMEDLLYYY-GVDIVFNGHVHAYERSN 390 (487)
Q Consensus 323 ~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~-----~~~~r~~l~~l~~~~-~VdlvlsGH~H~yeR~~ 390 (487)
+||+++|++.. ..++||++|+|++......... ....++.|++|++++ +|+++|+||.|.+.+..
T Consensus 95 ~WL~~~L~~~~---~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~V~~v~~GH~H~~~~~~ 165 (214)
T cd07399 95 QWANEVLKKHP---DRPAILTTHAYLNCDDSRPDSIDYDSDVNDGQQIWDKLVKKNDNVFMVLSGHVHGAGRTT 165 (214)
T ss_pred HHHHHHHHHCC---CCCEEEEecccccCCCCcCcccccccccccHHHHHHHHHhCCCCEEEEEccccCCCceEE
Confidence 99999999853 2358999999988654321111 123356788999999 79999999999998774
No 15
>cd00842 MPP_ASMase acid sphingomyelinase and related proteins, metallophosphatase domain. Acid sphingomyelinase (ASMase) is a ubiquitously expressed phosphodiesterase which hydrolyzes sphingomyelin in acid pH conditions to form ceramide, a bioactive second messenger, as part of the sphingomyelin signaling pathway. ASMase is localized at the noncytosolic leaflet of biomembranes (for example the luminal leaflet of endosomes, lysosomes and phagosomes, and the extracellular leaflet of plasma membranes). ASMase-deficient humans develop Niemann-Pick disease. This disease is characterized by lysosomal storage of sphingomyelin in all tissues. Although ASMase-deficient mice are resistant to stress-induced apoptosis, they have greater susceptibility to bacterial infection. The latter correlates with defective phagolysosomal fusion and antibacterial killing activity in ASMase-deficient macrophages. ASMase belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but
Probab=99.79 E-value=1.3e-18 Score=173.64 Aligned_cols=192 Identities=20% Similarity=0.285 Sum_probs=127.0
Q ss_pred EEecCCCCCC---hHHHHHHHHHc--CCCEEEEcCccccccccccCCCccccccccCCCCcccchhhH--HHHHHHHhhh
Q 039280 177 VVGDLGLTYN---TTTTVAHLMSN--HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQP--RWDYWGRYMQ 249 (487)
Q Consensus 177 v~gD~~~~~~---~~~~l~~l~~~--~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~--~w~~~~~~~~ 249 (487)
.+|+.+.... ..++++.+.+. +|||||++||++..+.+.. ..+ ... .+..+.+.++
T Consensus 42 ~~G~~~CD~p~~l~~s~l~~i~~~~~~~dfii~tGD~v~h~~~~~----------------~~~-~~~~~~~~~~~~~l~ 104 (296)
T cd00842 42 PWGDYGCDSPWRLVESALEAIKKNHPKPDFILWTGDLVRHDVDEQ----------------TPE-TLVLISISNLTSLLK 104 (296)
T ss_pred CCcCcCCCCcHHHHHHHHHHHHHhCCCCCEEEEcCCCCCCCchhh----------------chh-HHHHHHHHHHHHHHH
Confidence 3677664433 24566777776 8999999999997542210 000 011 2455666677
Q ss_pred ccccCCCEEEecCCcccccCcc-------chhhHHhhcccC--CCCCCC-CCCCcceEEEE-eCCEEEEEEcCcccC---
Q 039280 250 PLVSNVPTMVIEGEHEIERQAE-------NQTFAAYSSRFA--FPSEES-GSSSSLYYSFN-AGGIHFVMLSAYIDY--- 315 (487)
Q Consensus 250 ~l~~~~P~~~v~GNHD~~~~~~-------~~~~~~y~~~f~--~P~~~~-~~~~~~yYsf~-~g~v~fi~Ldt~~~~--- 315 (487)
.....+|+++++||||...... ...+..+...|. ++.... ....+.||++. .++++||+|||....
T Consensus 105 ~~~~~~pv~~~~GNHD~~p~~~~~~~~~~~~~~~~~~~~w~~~l~~~~~~~~~~ggYY~~~~~~~l~vI~Lnt~~~~~~~ 184 (296)
T cd00842 105 KAFPDTPVYPALGNHDSYPVNQFPPNNSPSWLYDALAELWKSWLPEEAEETFKKGGYYSVPVKPGLRVISLNTNLYYKKN 184 (296)
T ss_pred HhCCCCCEEEcCCCCCCCcccccCCcccccHHHHHHHHHHHhhcCHHHHHHhhcceEEEEEcCCCeEEEEEeCccccccC
Confidence 7778899999999999975421 112222323231 232111 11246789998 889999999996432
Q ss_pred --------CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcC--CcEEEeCcccc
Q 039280 316 --------DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYG--VDIVFNGHVHA 385 (487)
Q Consensus 316 --------~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~--VdlvlsGH~H~ 385 (487)
....+|++||+++|+++++... .++|++|+|+....... .....+.|.+|+++|. |.++|+||+|.
T Consensus 185 ~~~~~~~~~~~~~Ql~WL~~~L~~a~~~~~-~v~I~~HiPp~~~~~~~---~~~~~~~~~~ii~~y~~~i~~~~~GH~H~ 260 (296)
T cd00842 185 FWLLGSNETDPAGQLQWLEDELQEAEQAGE-KVWIIGHIPPGVNSYDT---LENWSERYLQIINRYSDTIAGQFFGHTHR 260 (296)
T ss_pred hhhhccCCCCHHHHHHHHHHHHHHHHHCCC-eEEEEeccCCCCccccc---chHHHHHHHHHHHHHHHhhheeeeccccc
Confidence 1247899999999998754333 47889999987643221 1345788999999997 77899999999
Q ss_pred ceec
Q 039280 386 YERS 389 (487)
Q Consensus 386 yeR~ 389 (487)
.+..
T Consensus 261 d~~~ 264 (296)
T cd00842 261 DEFR 264 (296)
T ss_pred ceEE
Confidence 8766
No 16
>PF00149 Metallophos: Calcineurin-like phosphoesterase; InterPro: IPR004843 This domain is found in a diverse range of phosphoesterases [], including protein phosphoserine phosphatases, nucleotidases, sphingomyelin phosphodiesterases and 2'-3' cAMP phosphodiesterases, as well as nucleases such as bacterial SbcD or yeast MRE11. The most conserved regions in this domain centre around the metal chelating residues.; GO: 0016787 hydrolase activity; PDB: 2IAE_C 3DW8_F 3FGA_C 2IE4_C 2NYM_C 2NYL_C 3K7V_C 2NPP_C 2IE3_C 3K7W_C ....
Probab=99.72 E-value=8.8e-18 Score=150.93 Aligned_cols=188 Identities=23% Similarity=0.247 Sum_probs=99.6
Q ss_pred cEEEEEecCCCCCChH-----HHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHH-H
Q 039280 173 NRIAVVGDLGLTYNTT-----TTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWG-R 246 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~~-----~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~-~ 246 (487)
|||+++||+|...... .......+.++|+||++||+++.... ...+.... .
T Consensus 1 ~ri~~isD~H~~~~~~~~~~~~~~~~~~~~~~d~ii~~GD~~~~~~~-----------------------~~~~~~~~~~ 57 (200)
T PF00149_consen 1 MRILVISDLHGGYDDDSDAFRKLDEIAAENKPDFIIFLGDLVDGGNP-----------------------SEEWRAQFWF 57 (200)
T ss_dssp EEEEEEEBBTTTHHHHCHHHHHHHHHHHHTTTSEEEEESTSSSSSSH-----------------------HHHHHHHHHH
T ss_pred CeEEEEcCCCCCCcchhHHHHHHHHHhccCCCCEEEeeccccccccc-----------------------cccchhhhcc
Confidence 6999999999875433 22333445799999999999974210 11111111 1
Q ss_pred hhhccccCCCEEEecCCcccccCccchhhHHhhcccC-CCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCCh---HHH
Q 039280 247 YMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFA-FPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSS---DQY 322 (487)
Q Consensus 247 ~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~-~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~---~Q~ 322 (487)
........+|+++++||||.................. ..........+...........+............. .+.
T Consensus 58 ~~~~~~~~~~~~~~~GNHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (200)
T PF00149_consen 58 FIRLLNPKIPVYFILGNHDYYSGNSFYGFYDYQFEDYYGNYNYYYSYFNNKVIFDNDNFWFNSGNNEYPDYGMEAQQEWW 137 (200)
T ss_dssp HHHHHHTTTTEEEEE-TTSSHHHHHHHHHHHHHHSSEEECSSEEECTESSEEEEEETTEEEEEHCCHTHHSEHHHHHHHH
T ss_pred chhhhhccccccccccccccceeccccccccccccccccccccccccCcceeeecccccccccccccccccccccchhcc
Confidence 2233456899999999999974321111111111110 000000000000011222222222222221111122 333
Q ss_pred HHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcc--hhHHHHHHHHHHHHHcCCcEEEeCccccc
Q 039280 323 KWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYR--EVECMRVEMEDLLYYYGVDIVFNGHVHAY 386 (487)
Q Consensus 323 ~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~--~~~~~r~~l~~l~~~~~VdlvlsGH~H~y 386 (487)
.|+...++. ...+++||++|+|+++....... .....++.+..++++++|+++|+||+|.|
T Consensus 138 ~~~~~~~~~---~~~~~~iv~~H~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~GH~H~~ 200 (200)
T PF00149_consen 138 LWLLLLLEA---KNDDPVIVFTHHPPYSSSSDSSSYGNESKGREALEELLKKYNVDLVLSGHTHRY 200 (200)
T ss_dssp HHHHHHHHE---EEESEEEEEESSSSSTTSSSTHHHSSEEEHHHHHHHHHHHTTCSEEEEESSSSE
T ss_pred ccccccccc---ccccceeEEEecCCCCccccccccchhhccHHHHHHHHhhCCCCEEEeCceecC
Confidence 333333333 34568999999999876543211 01235678899999999999999999986
No 17
>cd08163 MPP_Cdc1 Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. Cdc1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site
Probab=99.72 E-value=2.5e-16 Score=153.24 Aligned_cols=174 Identities=19% Similarity=0.210 Sum_probs=112.8
Q ss_pred HHHHHHHHH-cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhccccCCCEEEecCCccc
Q 039280 188 TTTVAHLMS-NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEI 266 (487)
Q Consensus 188 ~~~l~~l~~-~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~ 266 (487)
.+.+..+.+ .+||+||++||++.. |... ..+.|...++.|.+.+.++...+|++.++||||+
T Consensus 34 r~~~~~~~~~l~PD~vv~lGDL~d~------G~~~-----------~~~~~~~~~~rf~~i~~~~~~~~pv~~VpGNHDi 96 (257)
T cd08163 34 RRNWRYMQKQLKPDSTIFLGDLFDG------GRDW-----------ADEYWKKEYNRFMRIFDPSPGRKMVESLPGNHDI 96 (257)
T ss_pred HHHHHHHHHhcCCCEEEEecccccC------CeeC-----------cHHHHHHHHHHHHHHhcCCCccceEEEeCCCccc
Confidence 344455544 589999999999852 3210 0112223344555555554446899999999998
Q ss_pred ccCccc--hhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCccc-----CCCChHHHHHHHHHhcccCCCCCCe
Q 039280 267 ERQAEN--QTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYID-----YDKSSDQYKWLESDLGDVDREVTPW 339 (487)
Q Consensus 267 ~~~~~~--~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~-----~~~~~~Q~~WL~~~L~~~~r~~~~w 339 (487)
...... .....|.+.|. ..+|+|++|+++||+||+... .....+|.+||++.|++... ..|
T Consensus 97 g~~~~~~~~~~~rf~~~Fg----------~~~~~~~~~~~~fV~Lds~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~p- 164 (257)
T cd08163 97 GFGNGVVLPVRQRFEKYFG----------PTSRVIDVGNHTFVILDTISLSNKDDPDVYQPPREFLHSFSAMKVK-SKP- 164 (257)
T ss_pred CCCCCCCHHHHHHHHHHhC----------CCceEEEECCEEEEEEccccccCCcccccchhHHHHHHhhhhccCC-CCc-
Confidence 543211 22345666663 235889999999999999632 12356899999999987532 233
Q ss_pred EEEEcCCCccccCCCCcc---hh------------H-HH-HHHHHHHHHHcCCcEEEeCccccceecc
Q 039280 340 LIAAWHPPWYSTYSAHYR---EV------------E-CM-RVEMEDLLYYYGVDIVFNGHVHAYERSN 390 (487)
Q Consensus 340 ~Iv~~H~P~y~~~~~~~~---~~------------~-~~-r~~l~~l~~~~~VdlvlsGH~H~yeR~~ 390 (487)
+||++|+|+|.......+ +. + .+ .+.-..||++.+..+||+||+|.|-...
T Consensus 165 ~ILl~H~Plyr~~~~~cg~~re~~~~~~~~~g~~yq~~l~~~~s~~il~~~~P~~vfsGhdH~~C~~~ 232 (257)
T cd08163 165 RILLTHVPLYRPPNTSCGPLRESKTPLPYGYGYQYQNLLEPSLSEVILKAVQPVIAFSGDDHDYCEVV 232 (257)
T ss_pred EEEEeccccccCCCCCCCCccccCCCCCCCCCccceeecCHHHHHHHHHhhCCcEEEecCCCccceeE
Confidence 899999999864321111 00 0 11 2344578888899999999999998763
No 18
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=99.68 E-value=1.2e-15 Score=146.90 Aligned_cols=190 Identities=17% Similarity=0.241 Sum_probs=117.2
Q ss_pred EEEecCCCCC--------C---hHHHHHHHHHc------CCCEEEEcCccccccccccCCCccccccccCCCCcccchhh
Q 039280 176 AVVGDLGLTY--------N---TTTTVAHLMSN------HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQ 238 (487)
Q Consensus 176 ~v~gD~~~~~--------~---~~~~l~~l~~~------~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~ 238 (487)
.+++|+|... - ..+.++++.+. +||+||++||+++. +. .
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~~~D~viiaGDl~~~------~~-----------------~- 57 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVAPEDIVLIPGDISWA------MK-----------------L- 57 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCccC------CC-----------------h-
Confidence 4789999763 1 13456666554 89999999999842 11 0
Q ss_pred HHHHHHHHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCccc----
Q 039280 239 PRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYID---- 314 (487)
Q Consensus 239 ~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~---- 314 (487)
.......+.++.+ ..|+++++||||+.... ...+...+. ... ..-....++.++++.|+.++....
T Consensus 58 ~~~~~~l~~l~~l--~~~v~~V~GNHD~~~~~----~~~~~~~l~--~~~--~~~~~n~~~~~~~i~i~G~~~~~~~~~~ 127 (232)
T cd07393 58 EEAKLDLAWIDAL--PGTKVLLKGNHDYWWGS----ASKLRKALE--ESR--LALLFNNAYIDDDVAICGTRGWDNPGNP 127 (232)
T ss_pred HHHHHHHHHHHhC--CCCeEEEeCCccccCCC----HHHHHHHHH--hcC--eEEeccCcEEECCEEEEEEEeeCCCCCc
Confidence 1122223333333 34789999999984211 122222121 000 000013446678899998763211
Q ss_pred C-------------CCChHHHHHHHHHhcccCCCC-CCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEe
Q 039280 315 Y-------------DKSSDQYKWLESDLGDVDREV-TPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFN 380 (487)
Q Consensus 315 ~-------------~~~~~Q~~WL~~~L~~~~r~~-~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~Vdlvls 380 (487)
. .....|++||++.|+++.... ..++|+++|+|++..... .+.+..++++++++++|+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~~~~~~i~~~H~p~~~~~~~--------~~~~~~~~~~~~v~~vl~ 199 (232)
T cd07393 128 WPPINETLKVEEDEKIFERELERLELSLKAAKKREKEKIKIVMLHYPPANENGD--------DSPISKLIEEYGVDICVY 199 (232)
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCCcCCCCC--------HHHHHHHHHHcCCCEEEE
Confidence 0 012568999999999864322 246899999998764321 235678889999999999
Q ss_pred CccccceecccccCCccCCCCcEEEEeCCc
Q 039280 381 GHVHAYERSNRVYNYSLDPCGPVYILVGDG 410 (487)
Q Consensus 381 GH~H~yeR~~p~~~~~~~~~g~vyIv~G~g 410 (487)
||+|.+++..|+.. .-+|+.|+++.++
T Consensus 200 GH~H~~~~~~~~~~---~~~gi~~~~~~~~ 226 (232)
T cd07393 200 GHLHGVGRDRAING---ERGGIRYQLVSAD 226 (232)
T ss_pred CCCCCCcccccccc---eECCEEEEEEcch
Confidence 99999999877632 2457777776654
No 19
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=99.64 E-value=2.3e-15 Score=141.46 Aligned_cols=150 Identities=20% Similarity=0.246 Sum_probs=95.2
Q ss_pred CcEEEEEecCCCCCCh------------HHHHHH-HHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhh
Q 039280 172 PNRIAVVGDLGLTYNT------------TTTVAH-LMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQ 238 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~~------------~~~l~~-l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~ 238 (487)
.+||++++|+|..... .+.+.+ +.+.+||+||++||+++.... .....
T Consensus 2 ~~ki~~isDlH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vv~~GDl~~~~~~-------------------~~~~~ 62 (199)
T cd07383 2 KFKILQFADLHFGEGEGTCEGCEADLKTVAFIERVLDAEKPDLVVLTGDLITGENT-------------------NDNST 62 (199)
T ss_pred ceEEEEEeeecccCCCCCCCcchhhHHHHHHHHHHHhhcCCCEEEECCccccCCCC-------------------chHHH
Confidence 4899999999986432 122333 334689999999999974211 00012
Q ss_pred HHHHHHHHhhhccc-cCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCC
Q 039280 239 PRWDYWGRYMQPLV-SNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDK 317 (487)
Q Consensus 239 ~~w~~~~~~~~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~ 317 (487)
..|+ +.++.+. ..+|+++++||||. ....
T Consensus 63 ~~~~---~~~~~l~~~~~p~~~~~GNHD~-----------------------------------------------~g~l 92 (199)
T cd07383 63 SALD---KAVSPMIDRKIPWAATFGNHDG-----------------------------------------------YDWI 92 (199)
T ss_pred HHHH---HHHHHHHHcCCCEEEECccCCC-----------------------------------------------CCCC
Confidence 3344 4444442 47999999999991 1123
Q ss_pred ChHHHHHHHHHhcccC--CCCCCeEEEEcCCCccccCCCC---------cchh---HHHHHH-HHHHHHHcCCcEEEeCc
Q 039280 318 SSDQYKWLESDLGDVD--REVTPWLIAAWHPPWYSTYSAH---------YREV---ECMRVE-MEDLLYYYGVDIVFNGH 382 (487)
Q Consensus 318 ~~~Q~~WL~~~L~~~~--r~~~~w~Iv~~H~P~y~~~~~~---------~~~~---~~~r~~-l~~l~~~~~VdlvlsGH 382 (487)
...|++||+++|++.. +....+.++++|+|+......+ ..+. ....+. +..+.+..+|+++|+||
T Consensus 93 ~~~ql~wL~~~l~~~~~~~~~~~~~l~f~H~P~~~~~~~~~~~~~~~g~~~d~~~~~~~~~~~~~~~~~~~~v~~v~~GH 172 (199)
T cd07383 93 RPSQIEWFKETSAALKKKYGKPIPSLAFFHIPLPEYREVWEGKGKVPGINNEKVCCPKINSGLFKALLERGDVKGVFCGH 172 (199)
T ss_pred CHHHHHHHHHHHHHHhhccCCCCcceEEEecChHHHHhhhcccCCCCccCCcccCCCcCCcHHHHHHHHcCCeEEEEeCC
Confidence 5799999999999863 2234569999999976532211 0010 011233 34445667899999999
Q ss_pred cccceecc
Q 039280 383 VHAYERSN 390 (487)
Q Consensus 383 ~H~yeR~~ 390 (487)
+|.++...
T Consensus 173 ~H~~~~~~ 180 (199)
T cd07383 173 DHGNDFCG 180 (199)
T ss_pred CCCcceec
Confidence 99987653
No 20
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=99.64 E-value=6.6e-15 Score=136.35 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=101.9
Q ss_pred EEEEecCCCCCChHHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhccccC
Q 039280 175 IAVVGDLGLTYNTTTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPLVSN 254 (487)
Q Consensus 175 f~v~gD~~~~~~~~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l~~~ 254 (487)
|+++||+|........ ..+.+.++|+||++||++.. +.. .....+ +.++. ..
T Consensus 1 i~~~sD~H~~~~~~~~-~~~~~~~~D~vv~~GDl~~~------~~~------------------~~~~~~-~~l~~--~~ 52 (188)
T cd07392 1 ILAISDIHGDVEKLEA-IILKAEEADAVIVAGDITNF------GGK------------------EAAVEI-NLLLA--IG 52 (188)
T ss_pred CEEEEecCCCHHHHHH-HHhhccCCCEEEECCCccCc------CCH------------------HHHHHH-HHHHh--cC
Confidence 5789999986533222 34556789999999999952 210 111112 33333 36
Q ss_pred CCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCccc------CCCChHHHHHHHHH
Q 039280 255 VPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYID------YDKSSDQYKWLESD 328 (487)
Q Consensus 255 ~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~------~~~~~~Q~~WL~~~ 328 (487)
+|+++++||||.... ........ . ...+ ..+.++++.|+.+++... .....+|++|+ +.
T Consensus 53 ~p~~~v~GNHD~~~~-----~~~~~~~~-~------~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~-~~ 117 (188)
T cd07392 53 VPVLAVPGNCDTPEI-----LGLLTSAG-L------NLHG--KVVEVGGYTFVGIGGSNPTPFNTPIELSEEEIVSD-GR 117 (188)
T ss_pred CCEEEEcCCCCCHHH-----HHhhhcCc-E------ecCC--CEEEECCEEEEEeCCCCCCCCCCccccCHHHHHHh-hh
Confidence 899999999997411 11100000 0 0011 245678999999987421 12357899998 44
Q ss_pred hcccCCCCCCeEEEEcCCCccccC-CCCcchhHHHHHHHHHHHHHcCCcEEEeCccccce
Q 039280 329 LGDVDREVTPWLIAAWHPPWYSTY-SAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYE 387 (487)
Q Consensus 329 L~~~~r~~~~w~Iv~~H~P~y~~~-~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~ye 387 (487)
|+.. ..+.+|+++|+|++... ...........+.+.+++++++++++|+||+|.-.
T Consensus 118 l~~~---~~~~~ilv~H~pp~~~~~d~~~~~~~~g~~~l~~li~~~~~~~~l~GH~H~~~ 174 (188)
T cd07392 118 LNNL---LAKNLILVTHAPPYGTAVDRVSGGFHVGSKAIRKFIEERQPLLCICGHIHESR 174 (188)
T ss_pred hhcc---CCCCeEEEECCCCcCCcccccCCCCccCCHHHHHHHHHhCCcEEEEecccccc
Confidence 5442 22348999999987631 11111111224678899999999999999999864
No 21
>TIGR03729 acc_ester putative phosphoesterase. Members of this protein family belong to the larger family pfam00149 (calcineurin-like phosphoesterase), a family largely defined by small motifs of metal-chelating residues. The subfamily in this model shows a good but imperfect co-occurrence in species with domain TIGR03715 that defines a novel class of signal peptide typical of the accessory secretory system.
Probab=99.63 E-value=3.7e-15 Score=144.10 Aligned_cols=176 Identities=20% Similarity=0.251 Sum_probs=106.9
Q ss_pred EEEEEecCCCCCCh-------HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHH
Q 039280 174 RIAVVGDLGLTYNT-------TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGR 246 (487)
Q Consensus 174 ~f~v~gD~~~~~~~-------~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~ 246 (487)
||++++|+|..... ...++.+.+.++|+|+++||++.. . .+...+.+
T Consensus 1 ki~~iSDlH~~~~~~~~~~~l~~~~~~~~~~~~d~vv~~GDl~~~--~------------------------~~~~~~~~ 54 (239)
T TIGR03729 1 KIAFSSDLHIDLNHFDTEEMLETLAQYLKKQKIDHLHIAGDISND--F------------------------QRSLPFIE 54 (239)
T ss_pred CEEEEEeecCCCCCCCHHHHHHHHHHHHHhcCCCEEEECCccccc--h------------------------hhHHHHHH
Confidence 58999999965321 234555667789999999999942 0 01122333
Q ss_pred hhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCC----------
Q 039280 247 YMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYD---------- 316 (487)
Q Consensus 247 ~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~---------- 316 (487)
.+..+ ..+|++.++||||+.... .+..+...+. + ....+.++.+..++++|++++...++.
T Consensus 55 ~l~~~-~~~pv~~v~GNHD~~~~~---~~~~~~~~~~-~----~~l~~~~~~~~~~~~~~ig~~gw~d~~~~~~~~~~~~ 125 (239)
T TIGR03729 55 KLQEL-KGIKVTFNAGNHDMLKDL---TYEEIESNDS-P----LYLHNRFIDIPNTQWRIIGNNGWYDYSFSNDKTSKEI 125 (239)
T ss_pred HHHHh-cCCcEEEECCCCCCCCCC---CHHHHHhccc-h----hhhcccccccCCCceEEEeeccceecccccccCHHHH
Confidence 33332 468999999999985221 1121222110 0 001122333444678888888432210
Q ss_pred ---------------------CChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCC------CCcchhHH--HHHHHH
Q 039280 317 ---------------------KSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYS------AHYREVEC--MRVEME 367 (487)
Q Consensus 317 ---------------------~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~------~~~~~~~~--~r~~l~ 367 (487)
...+|++||++.|++... .+ +||++|+|+..... ..+..... ..+.|.
T Consensus 126 ~~~~~d~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~--~~-~ivvtH~pP~~~~~~~~~~~~~~~~~~~~~~s~~l~ 202 (239)
T TIGR03729 126 LRWKKSFWFDRRIKRPMSDPERTAIVLKQLKKQLNQLDN--KQ-VIFVTHFVPHRDFIYVPMDHRRFDMFNAFLGSQHFG 202 (239)
T ss_pred HHhhhcEEeecccCCCCChHHHHHHHHHHHHHHHHhcCC--CC-EEEEEcccchHHHhcCCCCCcchhhhhhccChHHHH
Confidence 136789999999987632 22 88888998754211 11111111 137889
Q ss_pred HHHHHcCCcEEEeCccccce
Q 039280 368 DLLYYYGVDIVFNGHVHAYE 387 (487)
Q Consensus 368 ~l~~~~~VdlvlsGH~H~ye 387 (487)
+++++++|+++|+||+|.-.
T Consensus 203 ~li~~~~v~~~i~GH~H~~~ 222 (239)
T TIGR03729 203 QLLVKYEIKDVIFGHLHRRF 222 (239)
T ss_pred HHHHHhCCCEEEECCccCCC
Confidence 99999999999999999865
No 22
>TIGR03767 P_acnes_RR metallophosphoesterase, PPA1498 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149 but with long inserts separating some of the shared motifs such that the homology is apparent only through multiple sequence alignment. Members of this protein family, in general, have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. Members include YP_056203.1 from Propionibacterium acnes KPA171202.
Probab=99.63 E-value=8e-15 Score=150.42 Aligned_cols=94 Identities=22% Similarity=0.343 Sum_probs=71.8
Q ss_pred CcceEEEE-eCCEEEEEEcCcccC-----CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcc-----hhHH
Q 039280 293 SSLYYSFN-AGGIHFVMLSAYIDY-----DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYR-----EVEC 361 (487)
Q Consensus 293 ~~~yYsf~-~g~v~fi~Ldt~~~~-----~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~-----~~~~ 361 (487)
+..||+|+ .++++||+|||.... ...++|++||+++|++. ..+++||++|||++........ ....
T Consensus 290 G~~YYSFd~~ggvrfIvLDSt~~~G~~~G~L~eeQL~WLeqeLa~a---~~k~VVVf~HHPp~s~g~~~~Dp~~pg~~~~ 366 (496)
T TIGR03767 290 GTGYYTFDIAGGVRGISMDTTNRAGGDEGSLGQTQFKWIKDTLRAS---SDTLFVLFSHHTSWSMVNELTDPVDPGEKRH 366 (496)
T ss_pred CCceEEEEeECCEEEEEEeCCCcCCCcCCccCHHHHHHHHHHHhcC---CCCCEEEEECCCCcccccccccccccccccc
Confidence 56799999 899999999997431 24799999999999974 3356999999998764322110 1112
Q ss_pred HHHHHHHHHHHc-CCcEEEeCccccceec
Q 039280 362 MRVEMEDLLYYY-GVDIVFNGHVHAYERS 389 (487)
Q Consensus 362 ~r~~l~~l~~~~-~VdlvlsGH~H~yeR~ 389 (487)
..++|.++|++| +|.++|+||.|.....
T Consensus 367 n~~eLldLL~~ypnV~aVfsGHvH~n~i~ 395 (496)
T TIGR03767 367 LGTELVSLLLEHPNVLAWVNGHTHSNKIT 395 (496)
T ss_pred CHHHHHHHHhcCCCceEEEECCcCCCccc
Confidence 346899999999 7999999999987654
No 23
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=99.55 E-value=9.1e-14 Score=137.90 Aligned_cols=179 Identities=25% Similarity=0.338 Sum_probs=116.6
Q ss_pred cEEEEEecCCCC--CC-h----HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHH
Q 039280 173 NRIAVVGDLGLT--YN-T----TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWG 245 (487)
Q Consensus 173 ~~f~v~gD~~~~--~~-~----~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~ 245 (487)
+||+.++|.|.. .. . .++++++...+||+||++|||+.. |. ...++...
T Consensus 1 ~~i~~isD~H~~~~~~~~~~~~~~~~~~i~~~~~D~~v~tGDl~~~------~~------------------~~~~~~~~ 56 (301)
T COG1409 1 MRIAHISDLHLGALGVDSEELLEALLAAIEQLKPDLLVVTGDLTND------GE------------------PEEYRRLK 56 (301)
T ss_pred CeEEEEecCcccccccchHHHHHHHHHHHhcCCCCEEEEccCcCCC------CC------------------HHHHHHHH
Confidence 589999999988 22 2 234566666789999999999963 22 12334455
Q ss_pred HhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEe-CCEEEEEEcCcccC----CCChH
Q 039280 246 RYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNA-GGIHFVMLSAYIDY----DKSSD 320 (487)
Q Consensus 246 ~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~-g~v~fi~Ldt~~~~----~~~~~ 320 (487)
+.++.+....|++++|||||..... ...+...+.... ..+..... ++++++.+|+.... .....
T Consensus 57 ~~l~~~~~~~~~~~vpGNHD~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~~~~~~G~~~~~ 125 (301)
T COG1409 57 ELLARLELPAPVIVVPGNHDARVVN----GEAFSDQFFNRY-------AVLVGACSSGGWRVIGLDSSVPGVPLGRLGAE 125 (301)
T ss_pred HHHhhccCCCceEeeCCCCcCCchH----HHHhhhhhcccC-------cceEeeccCCceEEEEecCCCCCCCCCEECHH
Confidence 5666555678999999999986432 122222221110 01111122 67899999997542 34789
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcC--CcEEEeCccccc
Q 039280 321 QYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYG--VDIVFNGHVHAY 386 (487)
Q Consensus 321 Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~--VdlvlsGH~H~y 386 (487)
|++||++.|++........+|+++|+|+.................+..++..++ |+++|+||.|..
T Consensus 126 q~~~l~~~l~~~~~~~~~~~v~~~hh~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~vl~GH~H~~ 193 (301)
T COG1409 126 QLDWLEEALAAAPERAKDTVVVLHHHPLPSPGTGVDRVALRDAGELLDVLIAHGNDVRLVLSGHIHLA 193 (301)
T ss_pred HHHHHHHHHHhCccccCceEEEecCCCCCCCCCccceeeeecchhHHHHHHhcCCceEEEEeCccccc
Confidence 999999999986433112467888888776443332222233456677888888 999999999977
No 24
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=99.55 E-value=1.1e-13 Score=132.16 Aligned_cols=187 Identities=19% Similarity=0.158 Sum_probs=112.9
Q ss_pred CcEEEEEecCCCCCC-----hHHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHH
Q 039280 172 PNRIAVVGDLGLTYN-----TTTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGR 246 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~-----~~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~ 246 (487)
++||++++|+|.... ..+.++.+.+.+||+|+++||+++.... .. +.+.+
T Consensus 1 ~~~i~~~sDlH~~~~~~~~~~~~~~~~~~~~~~d~vl~~GD~~~~~~~------------------------~~-~~~~~ 55 (223)
T cd07385 1 GLRIAHLSDLHLGPFVSRERLERLVEKINALKPDLVVLTGDLVDGSVD------------------------VL-ELLLE 55 (223)
T ss_pred CCEEEEEeecCCCccCCHHHHHHHHHHHhccCCCEEEEcCcccCCcch------------------------hh-HHHHH
Confidence 479999999998753 2345566666799999999999963100 00 23455
Q ss_pred hhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCChHHHHHHH
Q 039280 247 YMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSSDQYKWLE 326 (487)
Q Consensus 247 ~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~~Q~~WL~ 326 (487)
.++.+....|+++++||||....... .+........+. ...+....++.++..+..+.... .....+++.
T Consensus 56 ~l~~l~~~~~v~~v~GNHD~~~~~~~-~~~~~l~~~~v~-----~L~~~~~~~~~~~~~i~i~G~~~----~~~~~~~~~ 125 (223)
T cd07385 56 LLKKLKAPLGVYAVLGNHDYYSGDEE-NWIEALESAGIT-----VLRNESVEISVGGATIGIAGVDD----GLGRRPDLE 125 (223)
T ss_pred HHhccCCCCCEEEECCCcccccCchH-HHHHHHHHcCCE-----EeecCcEEeccCCeEEEEEeccC----ccccCCCHH
Confidence 56666667999999999998643211 101111111111 11233455666665444432111 122335666
Q ss_pred HHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCc----------
Q 039280 327 SDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYS---------- 396 (487)
Q Consensus 327 ~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~---------- 396 (487)
+.+++.+ .....|++.|.|.+.. .+.+.++|++|+||+|..|...|.....
T Consensus 126 ~~~~~~~--~~~~~I~l~H~P~~~~-----------------~~~~~~~dl~l~GHtHggqi~~~~~~~~~~~~~~~~~~ 186 (223)
T cd07385 126 KALKGLD--EDDPNILLAHQPDTAE-----------------EAAAWGVDLQLSGHTHGGQIRLPGIGPLVLSKLARPYD 186 (223)
T ss_pred HHHhCCC--CCCCEEEEecCCChhH-----------------HhcccCccEEEeccCCCCEEeccccccccchhhcCccc
Confidence 7776643 2346899999986421 1256799999999999999876654321
Q ss_pred ----cCCCCcEEEEeCCccc
Q 039280 397 ----LDPCGPVYILVGDGGN 412 (487)
Q Consensus 397 ----~~~~g~vyIv~G~gG~ 412 (487)
...+..+||..|.|..
T Consensus 187 ~G~~~~~~~~~~Vs~G~G~~ 206 (223)
T cd07385 187 YGLYRKGGSQLYVSRGLGTW 206 (223)
T ss_pred ceEEEECCEEEEEcCCccCC
Confidence 0134567777777654
No 25
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=99.54 E-value=7.1e-14 Score=124.16 Aligned_cols=132 Identities=25% Similarity=0.362 Sum_probs=90.4
Q ss_pred EEEEecCCCCCChH-----------HHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHH
Q 039280 175 IAVVGDLGLTYNTT-----------TTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDY 243 (487)
Q Consensus 175 f~v~gD~~~~~~~~-----------~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~ 243 (487)
|++++|+|.+.... ..++.+.+.++|+|+++||+++. +. +.+|+.
T Consensus 1 il~isD~Hl~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~------~~------------------~~~~~~ 56 (144)
T cd07400 1 ILHLSDLHFGPERKPELLALLSLLDRLLAEIKALDPDLVVITGDLTQR------GL------------------PEEFEE 56 (144)
T ss_pred CeEeCccCCCCCcchhHHHHHHHHHHHHHHHhccCCCEEEECCCCCCC------CC------------------HHHHHH
Confidence 57899999875321 12344456789999999999963 11 234556
Q ss_pred HHHhhhccccC-CCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCChHHH
Q 039280 244 WGRYMQPLVSN-VPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSSDQY 322 (487)
Q Consensus 244 ~~~~~~~l~~~-~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~~Q~ 322 (487)
+.+.++.+... +|++.++||||.
T Consensus 57 ~~~~~~~l~~~~~~~~~v~GNHD~-------------------------------------------------------- 80 (144)
T cd07400 57 AREFLDALPAPLEPVLVVPGNHDV-------------------------------------------------------- 80 (144)
T ss_pred HHHHHHHccccCCcEEEeCCCCeE--------------------------------------------------------
Confidence 66666666433 699999999996
Q ss_pred HHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCccCCCCc
Q 039280 323 KWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGP 402 (487)
Q Consensus 323 ~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~ 402 (487)
|+++|+|++......... ...++.+.+++++++++++|+||+|...... +. ....++
T Consensus 81 ------------------iv~~Hhp~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~l~GH~H~~~~~~-~~---~~~~~~ 137 (144)
T cd07400 81 ------------------IVVLHHPLVPPPGSGRER-LLDAGDALKLLAEAGVDLVLHGHKHVPYVGN-IS---NAGGGL 137 (144)
T ss_pred ------------------EEEecCCCCCCCcccccc-CCCHHHHHHHHHHcCCCEEEECCCCCcCeee-cc---CCCCCE
Confidence 888899987653321111 1145678899999999999999999876542 11 124567
Q ss_pred EEEEeCC
Q 039280 403 VYILVGD 409 (487)
Q Consensus 403 vyIv~G~ 409 (487)
++|.+|+
T Consensus 138 ~~~~aGs 144 (144)
T cd07400 138 VVIGAGT 144 (144)
T ss_pred EEEecCC
Confidence 7777764
No 26
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=99.50 E-value=7.3e-14 Score=127.27 Aligned_cols=145 Identities=19% Similarity=0.299 Sum_probs=87.6
Q ss_pred EEEEecCCCCCChHHH-H-HHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhccc
Q 039280 175 IAVVGDLGLTYNTTTT-V-AHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPLV 252 (487)
Q Consensus 175 f~v~gD~~~~~~~~~~-l-~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l~ 252 (487)
|+++||+|........ + +.+.+.++|+++++||+++.. . ...+.. ......
T Consensus 1 ~~~iSDlH~~~~~~~~~~~~~~~~~~~d~li~~GDi~~~~------~------------------~~~~~~---~~~~~~ 53 (166)
T cd07404 1 IQYLSDLHLEFEDNLADLLNFPIAPDADILVLAGDIGYLT------D------------------APRFAP---LLLALK 53 (166)
T ss_pred CceEccccccCccccccccccCCCCCCCEEEECCCCCCCc------c------------------hHHHHH---HHHhhc
Confidence 5789999987543322 1 223456899999999999531 1 011111 222334
Q ss_pred cCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCC-ChHHHHHHHHHhcc
Q 039280 253 SNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDK-SSDQYKWLESDLGD 331 (487)
Q Consensus 253 ~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~-~~~Q~~WL~~~L~~ 331 (487)
...|+++++||||+. +.|+...-..++.. ..++.+|+.++++
T Consensus 54 ~~~~v~~v~GNHD~~------------------------------------~~~~G~~~w~~~~~~~~~~~~~~~~d~~- 96 (166)
T cd07404 54 GFEPVIYVPGNHEFY------------------------------------VRIIGTTLWSDISLFGEAAARMRMNDFR- 96 (166)
T ss_pred CCccEEEeCCCcceE------------------------------------EEEEeeecccccCccchHHHHhCCCCCC-
Confidence 578999999999984 12222211111111 2345566655555
Q ss_pred cCCCCCCeEEEEcCCCccccCCCCc---c-hhHHHHHHHHHHHHHcCCcEEEeCccccceec
Q 039280 332 VDREVTPWLIAAWHPPWYSTYSAHY---R-EVECMRVEMEDLLYYYGVDIVFNGHVHAYERS 389 (487)
Q Consensus 332 ~~r~~~~w~Iv~~H~P~y~~~~~~~---~-~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~ 389 (487)
+.+||++|+|+........ . .....++.+..++++++|+++++||+|.....
T Consensus 97 ------~~~vv~~HhpP~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~i~GH~H~~~~~ 152 (166)
T cd07404 97 ------GKTVVVTHHAPSPLSLAPQYGDSLVNAAFAVDLDDLILADPIDLWIHGHTHFNFDY 152 (166)
T ss_pred ------CCEEEEeCCCCCccccCccccCCCcchhhhhccHhHHhhcCCCEEEECCccccceE
Confidence 2379999999876532211 1 11234566778889999999999999977433
No 27
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=99.48 E-value=1.8e-12 Score=123.19 Aligned_cols=173 Identities=14% Similarity=0.155 Sum_probs=101.9
Q ss_pred CcEEEEEecCCCCCCh-HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhc
Q 039280 172 PNRIAVVGDLGLTYNT-TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQP 250 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~~-~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~ 250 (487)
+.|+++++|+|..... .+.++.+.+.++|+|+++||+++. +.. ......+.+.+..
T Consensus 4 ~~kIl~iSDiHgn~~~le~l~~~~~~~~~D~vv~~GDl~~~------g~~-----------------~~~~~~~l~~l~~ 60 (224)
T cd07388 4 VRYVLATSNPKGDLEALEKLVGLAPETGADAIVLIGNLLPK------AAK-----------------SEDYAAFFRILGE 60 (224)
T ss_pred eeEEEEEEecCCCHHHHHHHHHHHhhcCCCEEEECCCCCCC------CCC-----------------HHHHHHHHHHHHh
Confidence 5799999999975332 233444445689999999999953 100 0122233333333
Q ss_pred cccCCCEEEecCCcccccCccchhhH-HhhcccCCCCCCCCCCCcceEEEEe-CCEEEEEEcCcccC--CCChHHH----
Q 039280 251 LVSNVPTMVIEGEHEIERQAENQTFA-AYSSRFAFPSEESGSSSSLYYSFNA-GGIHFVMLSAYIDY--DKSSDQY---- 322 (487)
Q Consensus 251 l~~~~P~~~v~GNHD~~~~~~~~~~~-~y~~~f~~P~~~~~~~~~~yYsf~~-g~v~fi~Ldt~~~~--~~~~~Q~---- 322 (487)
+ .+|+++++||||... ...+. .|...-.+|..- ..... ...+ |++.|+.|+....+ ...++|.
T Consensus 61 l--~~pv~~V~GNhD~~v---~~~l~~~~~~~~~~p~~~--~lh~~--~~~~~g~~~~~GlGGs~~~~~e~sE~e~~~~~ 131 (224)
T cd07388 61 A--HLPTFYVPGPQDAPL---WEYLREAYNAELVHPEIR--NVHET--FAFWRGPYLVAGVGGEIADEGEPEEHEALRYP 131 (224)
T ss_pred c--CCceEEEcCCCChHH---HHHHHHHhcccccCccce--ecCCC--eEEecCCeEEEEecCCcCCCCCcCHHHHhhhh
Confidence 2 579999999999630 00011 111111112210 01111 2344 56999999865433 2345552
Q ss_pred HHHHH----HhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccc
Q 039280 323 KWLES----DLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVH 384 (487)
Q Consensus 323 ~WL~~----~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H 384 (487)
+||.+ .|.+. ..+..|+++|+|++.....+- -.+.+..++++++..+++|||.|
T Consensus 132 ~~~~~~~l~~~~~~---~~~~~VLv~H~PP~g~g~~h~-----GS~alr~~I~~~~P~l~i~GHih 189 (224)
T cd07388 132 AWVAEYRLKALWEL---KDYRKVFLFHTPPYHKGLNEQ-----GSHEVAHLIKTHNPLVVLVGGKG 189 (224)
T ss_pred hhHHHHHHHHHHhC---CCCCeEEEECCCCCCCCCCcc-----CHHHHHHHHHHhCCCEEEEcCCc
Confidence 56433 33332 233589999999998742232 23677789999999999999999
No 28
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=99.45 E-value=1.7e-12 Score=127.81 Aligned_cols=164 Identities=17% Similarity=0.173 Sum_probs=96.8
Q ss_pred CcEEEEEecCCCCCC-----hHHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHH
Q 039280 172 PNRIAVVGDLGLTYN-----TTTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGR 246 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~-----~~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~ 246 (487)
++||++++|+|.... ..+.++.+.+.+||+|+++||+++.+ . ...++.+.+
T Consensus 49 ~~rI~~lSDlH~~~~~~~~~l~~~v~~i~~~~pDlVli~GD~~d~~------~------------------~~~~~~~~~ 104 (271)
T PRK11340 49 PFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFD------M------------------PLNFSAFSD 104 (271)
T ss_pred CcEEEEEcccCCCCcCCHHHHHHHHHHHHhcCCCEEEEccCcCCCC------c------------------cccHHHHHH
Confidence 699999999998632 23345556677999999999998521 0 012344556
Q ss_pred hhhccccCCCEEEecCCcccccCcc-chhhHHhhcccCCCCCCCCCCCcceEEEEeCC--EEEEEEcCcccCCCChHHHH
Q 039280 247 YMQPLVSNVPTMVIEGEHEIERQAE-NQTFAAYSSRFAFPSEESGSSSSLYYSFNAGG--IHFVMLSAYIDYDKSSDQYK 323 (487)
Q Consensus 247 ~~~~l~~~~P~~~v~GNHD~~~~~~-~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~--v~fi~Ldt~~~~~~~~~Q~~ 323 (487)
.++.+.+..|+++++||||+..... ...+....+...+ .-..+....+..++ +.++.++-... +...
T Consensus 105 ~L~~L~~~~pv~~V~GNHD~~~~~~~~~~~~~~l~~~gi-----~lL~n~~~~i~~~~~~i~i~G~~d~~~---~~~~-- 174 (271)
T PRK11340 105 VLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSAGI-----TVLFNQATVIATPNRQFELVGTGDLWA---GQCK-- 174 (271)
T ss_pred HHHHHhhcCCEEEecCCCCcccCccchHHHHHHHHhcCc-----EEeeCCeEEEeeCCcEEEEEEecchhc---cCCC--
Confidence 6666666689999999999853211 0112212111111 01223445555553 55666653211 1111
Q ss_pred HHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccc
Q 039280 324 WLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRV 392 (487)
Q Consensus 324 WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~ 392 (487)
..+.+++ +. ..|++.|.|-.. +.+.+.++||+||||+|.-|...|.
T Consensus 175 -~~~~~~~----~~-~~IlL~H~P~~~-----------------~~~~~~~~dL~lsGHTHGGQi~lP~ 220 (271)
T PRK11340 175 -PPPASEA----NL-PRLVLAHNPDSK-----------------EVMRDEPWDLMLCGHTHGGQLRVPL 220 (271)
T ss_pred -hhHhcCC----CC-CeEEEEcCCChh-----------------HhhccCCCCEEEeccccCCeEEccc
Confidence 1122222 22 489999999642 1234578999999999999987664
No 29
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=99.43 E-value=1.1e-12 Score=124.98 Aligned_cols=185 Identities=16% Similarity=0.145 Sum_probs=102.8
Q ss_pred EEEEEecCCCCCCh----------------HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchh
Q 039280 174 RIAVVGDLGLTYNT----------------TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETY 237 (487)
Q Consensus 174 ~f~v~gD~~~~~~~----------------~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y 237 (487)
||++++|+|.+... .++++.+.+.+||+||++||++.... ..
T Consensus 1 ~i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~GD~~~~~~----~~------------------ 58 (223)
T cd00840 1 RFLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIEEKVDFVLIAGDLFDSNN----PS------------------ 58 (223)
T ss_pred CeEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHhcCCCEEEECCcccCCCC----CC------------------
Confidence 68999999987431 22344445679999999999985310 00
Q ss_pred hHHHHHHHHhhhccc-cCCCEEEecCCcccccCccchhhHHhhcccCCCCC--CCCCCCcceEEEEeCCEEEEEEcCccc
Q 039280 238 QPRWDYWGRYMQPLV-SNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSE--ESGSSSSLYYSFNAGGIHFVMLSAYID 314 (487)
Q Consensus 238 ~~~w~~~~~~~~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~--~~~~~~~~yYsf~~g~v~fi~Ldt~~~ 314 (487)
...+..+.+.++.+. ..+|+++++||||....... ............. ...........++..++.|+.++....
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~g~~~~~~ 136 (223)
T cd00840 59 PEALELLIEALRRLKEAGIPVFIIAGNHDSPSRLGA--LSPLLALSGLHLVGVEEDVLTPLLLPKGGTGVAIYGLPYLRR 136 (223)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEecCCCCCcccccc--ccchHhhCcEEEEcccCcceeEEEeccCCeEEEEEECCCCCH
Confidence 123444555555553 57899999999998643211 1111000000000 000011122334455688888875422
Q ss_pred CCCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceec
Q 039280 315 YDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERS 389 (487)
Q Consensus 315 ~~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~ 389 (487)
. ....+.++++..+.+.. .....|++.|.|+.......... .......+...++|++++||.|..+..
T Consensus 137 ~-~~~~~~~~~~~~~~~~~--~~~~~Il~~H~~~~~~~~~~~~~----~~~~~~~~~~~~~d~v~~GH~H~~~~~ 204 (223)
T cd00840 137 S-RLRDLLADAELRPRPLD--PDDFNILLLHGGVAGAGPSDSER----APFVPEALLPAGFDYVALGHIHRPQII 204 (223)
T ss_pred H-HHHHHHHHHHHHhhccC--CCCcEEEEEeeeeecCCCCcccc----cccCcHhhcCcCCCEEECCCcccCeee
Confidence 1 12334445555555442 33458999999976543221100 122334556778999999999987653
No 30
>TIGR03768 RPA4764 metallophosphoesterase, RPA4764 family. This model describes a small collection of probable metallophosphoresterases, related to pfam00149. Members of this protein family usually have a Sec-independent TAT (twin-arginine translocation) signal sequence, N-terminal to the region modeled by this alignment. This model and TIGR03767 divide a narrow clade of pfam00149-related enzymes.
Probab=99.40 E-value=7.3e-12 Score=127.50 Aligned_cols=95 Identities=17% Similarity=0.210 Sum_probs=66.8
Q ss_pred CcceEEEE-eCCE--EEEEEcCccc-----------CCCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCc--
Q 039280 293 SSLYYSFN-AGGI--HFVMLSAYID-----------YDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHY-- 356 (487)
Q Consensus 293 ~~~yYsf~-~g~v--~fi~Ldt~~~-----------~~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~-- 356 (487)
+..||+|+ .+++ ++|+||+... ....++|++||+++|+++.. +.+++|+++|+|+.+......
T Consensus 291 G~~yYsFd~~g~vplrvIvLDSt~~~~~~s~pG~~~G~Ld~eQLaWLe~~La~a~a-~~p~VVV~hHpPi~t~gi~~md~ 369 (492)
T TIGR03768 291 DFACYSFVPKSDVPLKVIVLDDTQSEHDGSHDIHGHGSLDAKRWDWLKAELARGQA-DGQLMIIAAHIPIAVSPIGSEME 369 (492)
T ss_pred CcceeEEecCCCcceEEEEECCCccccccCCCCCcceeeCHHHHHHHHHHHHhCcC-CCceEEEEeCCCcccCCccchhh
Confidence 34599999 5855 9999998641 12469999999999998743 457788888888875222110
Q ss_pred -c----------hhHHHHHHHHHHHHHc-CCcEEEeCcccccee
Q 039280 357 -R----------EVECMRVEMEDLLYYY-GVDIVFNGHVHAYER 388 (487)
Q Consensus 357 -~----------~~~~~r~~l~~l~~~~-~VdlvlsGH~H~yeR 388 (487)
. .....-.+|..+|.+| +|.++||||.|.-..
T Consensus 370 w~~~~~~~~~~L~n~~~~~eLlaLL~~hPnVla~LsGHvHrn~v 413 (492)
T TIGR03768 370 WWLGAADANPDLQNAVSLTGLVTTLQKYPNLLMWIAGHRHLNTV 413 (492)
T ss_pred hccccccccccccccccHHHHHHHHhcCCCeEEEEcCCcccccc
Confidence 0 0001124788999999 588999999996443
No 31
>PF14008 Metallophos_C: Iron/zinc purple acid phosphatase-like protein C; PDB: 3KBP_B 1KBP_B 4KBP_C 2QFP_B 2QFR_A 1XZW_B.
Probab=99.39 E-value=3.7e-13 Score=101.53 Aligned_cols=50 Identities=38% Similarity=0.570 Sum_probs=31.8
Q ss_pred CCcEEEEeCCccccCCcccccCCCCCCCCCCCCCCCCCCccccccccCCCCCCcccCCCCCccceecCCcceEEEEEEcc
Q 039280 400 CGPVYILVGDGGNVEGLDIVHADEPGNCPEPSTTPDMGGSCAFNFTSGPASGKFCWDRQPDYSAYRESSFGHGILEVLIS 479 (487)
Q Consensus 400 ~g~vyIv~G~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~r~~~~G~~~l~~~n~ 479 (487)
++||||++|+||+ +++. .+.++|+|+++|..+|||++|+|+|+
T Consensus 1 kapVhiv~G~aG~--~l~~-----------------------------------~~~~~~~wsa~r~~~~Gy~~l~v~N~ 43 (62)
T PF14008_consen 1 KAPVHIVVGAAGN--GLDP-----------------------------------FPYPPPEWSAFRDSEYGYGRLTVANA 43 (62)
T ss_dssp TS-EEEEE--S-T-----------------------------------------B-SS--TTEEEEE---EEEEEEE-SS
T ss_pred CCCEEEEECcCCC--Cccc-----------------------------------ccCCCCCeeeeeccccCEEEEEEEcC
Confidence 4799999999999 4331 12467899999999999999999999
Q ss_pred ceeEEee
Q 039280 480 LSIALTT 486 (487)
Q Consensus 480 t~~~~~~ 486 (487)
|||+||.
T Consensus 44 T~l~~e~ 50 (62)
T PF14008_consen 44 THLHWEF 50 (62)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 9999996
No 32
>cd00838 MPP_superfamily metallophosphatase superfamily, metallophosphatase domain. Metallophosphatases (MPPs), also known as metallophosphoesterases, phosphodiesterases (PDEs), binuclear metallophosphoesterases, and dimetal-containing phosphoesterases (DMPs), represent a diverse superfamily of enzymes with a conserved domain containing an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. This superfamily includes: the phosphoprotein phosphatases (PPPs), Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive me
Probab=99.31 E-value=2.2e-11 Score=104.66 Aligned_cols=116 Identities=29% Similarity=0.457 Sum_probs=81.0
Q ss_pred EEEecCCCCCChHHHH---HHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhccc
Q 039280 176 AVVGDLGLTYNTTTTV---AHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPLV 252 (487)
Q Consensus 176 ~v~gD~~~~~~~~~~l---~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l~ 252 (487)
+++||+|......... ....+.++++|+++||+++.. .. ..+..+........
T Consensus 1 ~~~gD~h~~~~~~~~~~~~~~~~~~~~~~vi~~GD~~~~~------~~------------------~~~~~~~~~~~~~~ 56 (131)
T cd00838 1 AVISDIHGNLEALEAVLEAALAAAEKPDFVLVLGDLVGDG------PD------------------PEEVLAAALALLLL 56 (131)
T ss_pred CeeecccCCccchHHHHHHHHhcccCCCEEEECCcccCCC------CC------------------chHHHHHHHHHhhc
Confidence 4689999876543332 344457899999999999631 10 11122221233335
Q ss_pred cCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCChHHHHHHHHHhccc
Q 039280 253 SNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSSDQYKWLESDLGDV 332 (487)
Q Consensus 253 ~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~ 332 (487)
...|+++++||||
T Consensus 57 ~~~~~~~~~GNHD------------------------------------------------------------------- 69 (131)
T cd00838 57 LGIPVYVVPGNHD------------------------------------------------------------------- 69 (131)
T ss_pred CCCCEEEeCCCce-------------------------------------------------------------------
Confidence 6899999999999
Q ss_pred CCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecc
Q 039280 333 DREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSN 390 (487)
Q Consensus 333 ~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~ 390 (487)
|+++|.|++.............++.+..++.+.+++++|+||.|.+.+..
T Consensus 70 --------i~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GH~H~~~~~~ 119 (131)
T cd00838 70 --------ILLTHGPPYDPLDELSPDEDPGSEALLELLEKYGVDLVLSGHTHVYERRE 119 (131)
T ss_pred --------EEEeccCCCCCchhhcccchhhHHHHHHHHHHhCCCEEEeCCeecccccc
Confidence 89999998765433222222246788899999999999999999999884
No 33
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=99.26 E-value=3.3e-10 Score=110.27 Aligned_cols=209 Identities=21% Similarity=0.307 Sum_probs=116.9
Q ss_pred CcEEEEEecCCCCCC--------------------hHHHHHHHHH-cCCCEEEEcCccccccccccCCCccccccccCCC
Q 039280 172 PNRIAVVGDLGLTYN--------------------TTTTVAHLMS-NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIE 230 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~--------------------~~~~l~~l~~-~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~ 230 (487)
+|||+.++|+|.+.. ....++++++ .+||||+++||+++....
T Consensus 53 ~fKIlqvaDlH~g~g~~~~c~d~~p~~~~~csD~nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t---------------- 116 (379)
T KOG1432|consen 53 TFKILQVADLHFGFGRETRCRDVLPSEEACCSDLNTTNFVSRVLASEKPDLVVFTGDNIFGHST---------------- 116 (379)
T ss_pred ceEEEEeeccccccCCCccccccCcchhhhhcCccHHHHHHHHHhccCCCEEEEeCCccccccc----------------
Confidence 789999999998632 2234566554 699999999999974210
Q ss_pred CcccchhhHHHHHHHHhhhcc-ccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCC---CCCCcceEEEEeCC---
Q 039280 231 SPIQETYQPRWDYWGRYMQPL-VSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEES---GSSSSLYYSFNAGG--- 303 (487)
Q Consensus 231 ~~~~~~y~~~w~~~~~~~~~l-~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~---~~~~~~yYsf~~g~--- 303 (487)
+ .++ ..+++.++|. ..++||.++.||||-...........+... +|..-+ ...+..+--..+|+
T Consensus 117 ---~-Da~---~sl~kAvaP~I~~~IPwA~~lGNHDdes~ltr~ql~~~i~~--lP~s~~~v~p~dg~~~~~~g~gnyn~ 187 (379)
T KOG1432|consen 117 ---Q-DAA---TSLMKAVAPAIDRKIPWAAVLGNHDDESDLTRLQLMKFISK--LPYSLSQVNPPDGHMYIIDGFGNYNL 187 (379)
T ss_pred ---H-hHH---HHHHHHhhhHhhcCCCeEEEecccccccccCHHHHHHHHhc--CCCccccCCCcccceeeeecccceEE
Confidence 0 111 2355666776 689999999999998754333333333222 222100 00011110111111
Q ss_pred ---------------EEEEEEcCccc---------C-CCChHHHHHHHHHhcc---cCCCCCC-eEEEEcCCCcc--ccC
Q 039280 304 ---------------IHFVMLSAYID---------Y-DKSSDQYKWLESDLGD---VDREVTP-WLIAAWHPPWY--STY 352 (487)
Q Consensus 304 ---------------v~fi~Ldt~~~---------~-~~~~~Q~~WL~~~L~~---~~r~~~~-w~Iv~~H~P~y--~~~ 352 (487)
..++.||+..+ | .....|.+||+..-++ .+..-.| --+++.|.|+- +..
T Consensus 188 ~i~~~~ds~~~~~sv~~lyfld~~~~~s~~~~~~~Ydwik~sq~~wl~~~~~~~~~~~~~~~P~p~La~~HIP~~E~~~~ 267 (379)
T KOG1432|consen 188 QIEGAIDSELENKSVFNLYFLDSSSYTSVPPLLPGYDWIKESQLEWLSDTSKEFKEPNSKYNPQPGLAFFHIPLPEFLEL 267 (379)
T ss_pred EeccCCCcccccCceeeEEEEecCCcccccccccCccchhhhhHHHHhhhhhhhhcccCccCCCCceEEEEcccHHHhhc
Confidence 22445554322 1 2367899999987732 1112223 36888899863 221
Q ss_pred CC------Ccchh---HHHHHHHHHHHH-HcCCcEEEeCccccceecccccCCccCCCCcEEEEeCCccc
Q 039280 353 SA------HYREV---ECMRVEMEDLLY-YYGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGN 412 (487)
Q Consensus 353 ~~------~~~~~---~~~r~~l~~l~~-~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~ 412 (487)
.. ...+. ......+...|. ..+|+.|++||.|...--.+. ++.+++.=|+|+.
T Consensus 268 ~~~tp~~g~~~E~~~~~~~~sg~~~~L~~r~~Vk~vf~GHdHvNDfC~~~-------k~~~wlCygGgaG 330 (379)
T KOG1432|consen 268 ESKTPLIGVFQEGVSASKHNSGFLTTLVNRGNVKGVFCGHDHVNDFCGEL-------KGELWLCYGGGAG 330 (379)
T ss_pred cCCCcccceeeccccccccccHHHHHHHhccCcceEEeccccccceeccc-------CCeEEEEecCCCc
Confidence 11 01111 111245556666 778999999999987666543 3446766665544
No 34
>cd07389 MPP_PhoD Bacillus subtilis PhoD and related proteins, metallophosphatase domain. PhoD (also known as alkaline phosphatase D/APaseD in Bacillus subtilis) is a secreted phosphodiesterase encoded by phoD of the Pho regulon in Bacillus subtilis. PhoD homologs are found in prokaryotes, eukaryotes, and archaea. PhoD contains a twin arginine (RR) motif and is transported by the Tat (Twin-arginine translocation) translocation pathway machinery (TatAyCy). This family also includes the Fusarium oxysporum Fso1 protein. PhoD belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF
Probab=99.22 E-value=2.2e-10 Score=109.81 Aligned_cols=178 Identities=23% Similarity=0.253 Sum_probs=109.9
Q ss_pred EEEEEecCCCCCChHHHHHHHH----HcCCCEEEEcCccccccccccCCCccc--cccccCCCCcccchhhHHHHHHHH-
Q 039280 174 RIAVVGDLGLTYNTTTTVAHLM----SNHPDLLLLIGDLSYADLYLTNGTKSS--CYLCQSIESPIQETYQPRWDYWGR- 246 (487)
Q Consensus 174 ~f~v~gD~~~~~~~~~~l~~l~----~~~pdfvl~~GDl~y~d~~~~~g~~~~--~~~~~~~~~~~~~~y~~~w~~~~~- 246 (487)
||++.++.+...........+. +.+||++|++||.+|+|.......... .-..........+.|+..+..+..
T Consensus 1 r~a~~SC~~~~~~~~~~~~~~~~~~~~~~~d~~l~~GD~IY~d~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~Y~~~~~~ 80 (228)
T cd07389 1 RFAFGSCNKYESGYFNAYRALAYDHSEEDPDLFLHLGDQIYADDVGGLMPALIEGRPLEPAHEALTLEEYRERYRQYRSD 80 (228)
T ss_pred CEEEEECCCCCCCCcHHHHHHhhhccccCCCEEEEcCCeecccCCCcccccccCCcCcCCcccccCHHHHHHHHHHHcCC
Confidence 5788888877665555555554 679999999999999874311100000 000000012233445555555432
Q ss_pred -hhhccccCCCEEEecCCcccccCccc----------------hhhHHhhcccCCCCCCCC--CCCcceEEEEeCCE-EE
Q 039280 247 -YMQPLVSNVPTMVIEGEHEIERQAEN----------------QTFAAYSSRFAFPSEESG--SSSSLYYSFNAGGI-HF 306 (487)
Q Consensus 247 -~~~~l~~~~P~~~v~GNHD~~~~~~~----------------~~~~~y~~~f~~P~~~~~--~~~~~yYsf~~g~v-~f 306 (487)
.++.+.+.+|++.++.+||+..+.+. .....|......+..... .....|++|.+|.. .|
T Consensus 81 p~~~~~~~~~p~~~iwDDHDi~~n~~~~~~~~~~~~~~~~~~~~a~~ay~e~~~~~~~~~~~~~~~~~y~~~~~G~~~~~ 160 (228)
T cd07389 81 PDLQRLLAQVPTIGIWDDHDIGDNWGGDGAWVQDSPVFYARKAAARQAYLEFQPVRNPSPRRGGRGGIYRSFRFGDLVDL 160 (228)
T ss_pred HHHHHHhhcCCEEEeccccccccccccccccccCcchHHHHHHHHHHHHHHHcCCCCCCccCCCCceEEEEEecCCcceE
Confidence 35667788999999999999876543 112344444444333222 34678999999986 99
Q ss_pred EEEcCcccCCCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCC--cEEEeCccc
Q 039280 307 VMLSAYIDYDKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGV--DIVFNGHVH 384 (487)
Q Consensus 307 i~Ldt~~~~~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~V--dlvlsGH~H 384 (487)
|+||+.... ..+......|+.+..++.+.++ -++|||++|
T Consensus 161 ~~lD~R~~R--------------------------------------d~W~~~~~er~~l~~~~~~~~~~~vv~lSGDvH 202 (228)
T cd07389 161 ILLDTRTYR--------------------------------------DSWDGYPAERERLLDLLAKRKIKNVVFLSGDVH 202 (228)
T ss_pred EEEeccccc--------------------------------------ccccccHHHHHHHHHHHHHhCCCCeEEEecHHH
Confidence 999998754 2233334456777777655543 477999999
Q ss_pred cceec
Q 039280 385 AYERS 389 (487)
Q Consensus 385 ~yeR~ 389 (487)
..+-.
T Consensus 203 ~~~~~ 207 (228)
T cd07389 203 LAEAS 207 (228)
T ss_pred HHHHh
Confidence 76655
No 35
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=99.22 E-value=5.8e-10 Score=106.35 Aligned_cols=195 Identities=19% Similarity=0.219 Sum_probs=101.6
Q ss_pred cEEEEEecCCCCCChHHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhccc
Q 039280 173 NRIAVVGDLGLTYNTTTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPLV 252 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l~ 252 (487)
+||+++||+|..... ..++.+.+.+||+|+++||++... .++.+.+..+
T Consensus 1 ~rIa~isDiHg~~~~-~~~~~l~~~~pD~Vl~~GDi~~~~-----------------------------~~~~~~l~~l- 49 (238)
T cd07397 1 LRIAIVGDVHGQWDL-EDIKALHLLQPDLVLFVGDFGNES-----------------------------VQLVRAISSL- 49 (238)
T ss_pred CEEEEEecCCCCchH-HHHHHHhccCCCEEEECCCCCcCh-----------------------------HHHHHHHHhC-
Confidence 589999999976443 234556667899999999998320 1122333333
Q ss_pred cCCCEEEecCCcccccCccc-hhhHHhhcccCCCCCCCCCCCcceE---EEEeCCEEEEEEcCcc---------------
Q 039280 253 SNVPTMVIEGEHEIERQAEN-QTFAAYSSRFAFPSEESGSSSSLYY---SFNAGGIHFVMLSAYI--------------- 313 (487)
Q Consensus 253 ~~~P~~~v~GNHD~~~~~~~-~~~~~y~~~f~~P~~~~~~~~~~yY---sf~~g~v~fi~Ldt~~--------------- 313 (487)
..|+++++||||....... .....+......-. .... ..++....+.++.++.
T Consensus 50 -~~p~~~V~GNHD~~~~~~~~~k~~~l~~~L~~lg-------~~~l~~~~~~~~~~~~~vvG~R~~~~~g~~~~~~~~vr 121 (238)
T cd07397 50 -PLPKAVILGNHDAWYDATFRKKGDRVQEQLELLG-------DLHCGWGRLDFPPLPLSVVGGRPFSAGGGFWLSKKAVK 121 (238)
T ss_pred -CCCeEEEcCCCcccccccccchHHHHHHHHHHhC-------CcEEeecccccCCCCeEEEeeCCccCCCccccCHHHHH
Confidence 4689999999998643211 01222222221111 1111 1112221222222211
Q ss_pred -cC--CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCC-------------CcchhHHHHHHHHHHHHHcCCcE
Q 039280 314 -DY--DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSA-------------HYREVECMRVEMEDLLYYYGVDI 377 (487)
Q Consensus 314 -~~--~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~-------------~~~~~~~~r~~l~~l~~~~~Vdl 377 (487)
.| ..-.+-.+.+.+.++..+.. .+ .|++.|.++....+. .......+++++..+-..-.+++
T Consensus 122 ~~fgi~s~~eA~~~ive~~~~~~~~-~~-~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~~~~~~~l 199 (238)
T cd07397 122 AVYGVISLEESAQRIIAAAKKAPPD-LP-LILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQQGRQVPL 199 (238)
T ss_pred HHhCCCCHHHHHHHHHHHhhhcCCC-CC-eEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHhccCCCCE
Confidence 01 01123334444444433222 23 788899988654311 00123445666655543345899
Q ss_pred EEeCccccceecccccCC--ccCCCCcEEEEeC
Q 039280 378 VFNGHVHAYERSNRVYNY--SLDPCGPVYILVG 408 (487)
Q Consensus 378 vlsGH~H~yeR~~p~~~~--~~~~~g~vyIv~G 408 (487)
+++||.|.--|...-... ..+..|++|+...
T Consensus 200 ~~fGH~H~~l~~~~~~r~~~~~~~~gt~y~N~a 232 (238)
T cd07397 200 VVFGHMHHRLRRGKGLRNMIAVDREGTVYLNAA 232 (238)
T ss_pred EEeCCccCcccccccccceeeecCCCeEEEecc
Confidence 999999987544221111 1356899998654
No 36
>cd07379 MPP_239FB Homo sapiens 239FB and related proteins, metallophosphatase domain. 239FB (Fetal brain protein 239) is thought to play a role in central nervous system development, but its specific role in unknown. 239FB is expressed predominantly in human fetal brain from a gene located in the chromosome 11p13 region associated with the mental retardation component of the WAGR (Wilms tumor, Aniridia, Genitourinary anomalies, Mental retardation) syndrome. Orthologous brp-like (brain protein 239-like) proteins have been identified in the invertebrate amphioxus group and in vertebrates. 239FB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzyme
Probab=99.18 E-value=1.7e-10 Score=101.48 Aligned_cols=117 Identities=20% Similarity=0.213 Sum_probs=73.8
Q ss_pred EEEEEecCCCCCChHHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhcccc
Q 039280 174 RIAVVGDLGLTYNTTTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPLVS 253 (487)
Q Consensus 174 ~f~v~gD~~~~~~~~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l~~ 253 (487)
||+++||+|.... .+...++|+|+++||++.. +. ...++.+.+.++.+.
T Consensus 1 ~i~~isD~H~~~~------~~~~~~~D~vi~~GD~~~~------~~------------------~~~~~~~~~~l~~~~- 49 (135)
T cd07379 1 RFVCISDTHSRHR------TISIPDGDVLIHAGDLTER------GT------------------LEELQKFLDWLKSLP- 49 (135)
T ss_pred CEEEEeCCCCCCC------cCcCCCCCEEEECCCCCCC------CC------------------HHHHHHHHHHHHhCC-
Confidence 5899999998754 2334689999999999852 11 112233444444432
Q ss_pred CCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCChHHHHHHHHHhcccC
Q 039280 254 NVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSSDQYKWLESDLGDVD 333 (487)
Q Consensus 254 ~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~~Q~~WL~~~L~~~~ 333 (487)
..++++++||||.... +
T Consensus 50 ~~~~~~v~GNHD~~~~-----------------------------------------------------------~---- 66 (135)
T cd07379 50 HPHKIVIAGNHDLTLD-----------------------------------------------------------P---- 66 (135)
T ss_pred CCeEEEEECCCCCcCC-----------------------------------------------------------C----
Confidence 1235789999996310 1
Q ss_pred CCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccce
Q 039280 334 REVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYE 387 (487)
Q Consensus 334 r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~ye 387 (487)
. .+.|+++|.|++............-.+.+.+++++++++++|+||+|...
T Consensus 67 -~--~~~ilv~H~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~GH~H~~~ 117 (135)
T cd07379 67 -E--DTDILVTHGPPYGHLDLVSSGQRVGCEELLNRVQRVRPKLHVFGHIHEGY 117 (135)
T ss_pred -C--CCEEEEECCCCCcCccccccCcccCCHHHHHHHHHHCCcEEEEcCcCCcC
Confidence 1 23688889998764322111011112456677888999999999999874
No 37
>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily [].; PDB: 2GJU_A 1Z2W_A 1Z2X_B 3PSO_B 3PSN_B 1W24_A 2R17_B 3QFN_B 3QFO_A 3QFM_A ....
Probab=99.17 E-value=1.6e-10 Score=103.49 Aligned_cols=139 Identities=22% Similarity=0.301 Sum_probs=81.6
Q ss_pred cEEEEEecCCCCCCh-HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhcc
Q 039280 173 NRIAVVGDLGLTYNT-TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPL 251 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~-~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l 251 (487)
|||+++||+|..... .+.++.+ .++|+|+++||++.. .++.+.++.+
T Consensus 1 Mki~~~sD~H~~~~~~~~~~~~~--~~~d~vi~~GDi~~~------------------------------~~~~~~~~~~ 48 (156)
T PF12850_consen 1 MKIAVISDLHGNLDALEAVLEYI--NEPDFVIILGDIFDP------------------------------EEVLELLRDI 48 (156)
T ss_dssp EEEEEEE--TTTHHHHHHHHHHH--TTESEEEEES-SCSH------------------------------HHHHHHHHHH
T ss_pred CEEEEEeCCCCChhHHHHHHHHh--cCCCEEEECCCchhH------------------------------HHHHHHHhcC
Confidence 699999999986432 3345545 579999999999831 2233333333
Q ss_pred ccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCChHHHHHHHHHhcc
Q 039280 252 VSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSSDQYKWLESDLGD 331 (487)
Q Consensus 252 ~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~~Q~~WL~~~L~~ 331 (487)
|++++.||||... +....... . +.+.+..
T Consensus 49 ----~~~~v~GNHD~~~---------~~~~~~~~---------~-----------------------------~~~~~~~ 77 (156)
T PF12850_consen 49 ----PVYVVRGNHDNWA---------FPNENDEE---------Y-----------------------------LLDALRL 77 (156)
T ss_dssp ----EEEEE--CCHSTH---------HHSEECTC---------S-----------------------------SHSEEEE
T ss_pred ----CEEEEeCCccccc---------chhhhhcc---------c-----------------------------cccceee
Confidence 8999999999631 11111000 0 1111110
Q ss_pred cCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCccCCCCcEEEEeCCcc
Q 039280 332 VDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGG 411 (487)
Q Consensus 332 ~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG 411 (487)
......|++.|...+.... ..+.+..++...+++++|+||.|...... ..++.++..|+.+
T Consensus 78 ---~~~~~~i~~~H~~~~~~~~--------~~~~~~~~~~~~~~~~~~~GH~H~~~~~~--------~~~~~~~~~Gs~~ 138 (156)
T PF12850_consen 78 ---TIDGFKILLSHGHPYDVQW--------DPAELREILSRENVDLVLHGHTHRPQVFK--------IGGIHVINPGSIG 138 (156)
T ss_dssp ---EETTEEEEEESSTSSSSTT--------THHHHHHHHHHTTSSEEEESSSSSEEEEE--------ETTEEEEEE-GSS
T ss_pred ---eecCCeEEEECCCCccccc--------ChhhhhhhhcccCCCEEEcCCcccceEEE--------ECCEEEEECCcCC
Confidence 1123478888876655321 12345577789999999999999987762 4678889988877
Q ss_pred cc
Q 039280 412 NV 413 (487)
Q Consensus 412 ~~ 413 (487)
..
T Consensus 139 ~~ 140 (156)
T PF12850_consen 139 GP 140 (156)
T ss_dssp S-
T ss_pred CC
Confidence 64
No 38
>COG1408 Predicted phosphohydrolases [General function prediction only]
Probab=99.14 E-value=6.9e-10 Score=109.28 Aligned_cols=172 Identities=19% Similarity=0.187 Sum_probs=98.3
Q ss_pred CcEEEEEecCCCCCCh---HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhh
Q 039280 172 PNRIAVVGDLGLTYNT---TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYM 248 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~~---~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~ 248 (487)
+++++.++|+|..... .+.+.++.+..||+|+++||++..+. .+....+.+.+
T Consensus 44 ~~~iv~lSDlH~~~~~~~~~~~~~~i~~~~~DlivltGD~~~~~~------------------------~~~~~~~~~~L 99 (284)
T COG1408 44 GLKIVQLSDLHSLPFREEKLALLIAIANELPDLIVLTGDYVDGDR------------------------PPGVAALALFL 99 (284)
T ss_pred CeEEEEeehhhhchhhHHHHHHHHHHHhcCCCEEEEEeeeecCCC------------------------CCCHHHHHHHH
Confidence 6899999999988655 33455566678899999999995210 02345667788
Q ss_pred hccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEE--EcCccc-CCCChHHHHHH
Q 039280 249 QPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVM--LSAYID-YDKSSDQYKWL 325 (487)
Q Consensus 249 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~--Ldt~~~-~~~~~~Q~~WL 325 (487)
+++.+..+++++.||||+.............+.-. ..-.+..+.+....... .+.... ....+++..-+
T Consensus 100 ~~L~~~~gv~av~GNHd~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 171 (284)
T COG1408 100 AKLKAPLGVFAVLGNHDYGVDRSNVYIGDLLEELG--------RVVLRNEIAVIDLLALRIEVGGLDLYLAGVEDILAGL 171 (284)
T ss_pred HhhhccCCEEEEecccccccccccchhhhhhhhcc--------eeeecccchhcccccccccccccccccccCchHHhhC
Confidence 88888999999999999975432211111111100 00011111111111111 000000 01112232222
Q ss_pred H-----------HHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccC
Q 039280 326 E-----------SDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYN 394 (487)
Q Consensus 326 ~-----------~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~ 394 (487)
. +.+.+.+ .....|++.|.|-.- ..+.+++|||+||||+|.-|-..|.+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~--~~~~~IlL~H~P~~~-----------------~~~~~~~~dLvLSGHTHGGQi~~p~~~ 232 (284)
T COG1408 172 PLAPFTIGLDIAEALKQLD--EDLPGILLSHEPDII-----------------LQLRLYGVDLVLSGHTHGGQIRLPLWG 232 (284)
T ss_pred cccccccccchhhhhcccc--ccccceEeccCCcee-----------------hhhccCcceEEEeccccCCeEEeeccc
Confidence 2 3344432 223489999999643 234567999999999999998877654
No 39
>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional
Probab=99.10 E-value=1.1e-09 Score=105.95 Aligned_cols=198 Identities=17% Similarity=0.226 Sum_probs=107.6
Q ss_pred cEEEEEecCCCCCChH----HHHHHHH--HcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHH
Q 039280 173 NRIAVVGDLGLTYNTT----TTVAHLM--SNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGR 246 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~~----~~l~~l~--~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~ 246 (487)
||+++++|+|.+.... ..++.+. +.+||+|+++||++.. +. |.. .. ........+
T Consensus 1 M~i~~iSDlHl~~~~~~~~~~~~~~l~~~~~~~d~l~i~GDl~d~--~~--g~~-----------~~----~~~~~~~~~ 61 (241)
T PRK05340 1 MPTLFISDLHLSPERPAITAAFLRFLRGEARQADALYILGDLFEA--WI--GDD-----------DP----SPFAREIAA 61 (241)
T ss_pred CcEEEEeecCCCCCChhHHHHHHHHHHhhhccCCEEEEccceecc--cc--ccC-----------cC----CHHHHHHHH
Confidence 5899999999875432 2233332 3589999999999942 11 110 00 011233444
Q ss_pred hhhccc-cCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCChHHHHHH
Q 039280 247 YMQPLV-SNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSSDQYKWL 325 (487)
Q Consensus 247 ~~~~l~-~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~~Q~~WL 325 (487)
.++.+. ..+|+++++||||.... ..+.....+.. . .....+++++.+++..-.-.. ...+..++++
T Consensus 62 ~l~~l~~~g~~v~~v~GNHD~~~~------~~~~~~~g~~~-----l-~~~~~~~~~g~~i~l~HGd~~-~~~d~~y~~~ 128 (241)
T PRK05340 62 ALKALSDSGVPCYFMHGNRDFLLG------KRFAKAAGMTL-----L-PDPSVIDLYGQRVLLLHGDTL-CTDDKAYQRF 128 (241)
T ss_pred HHHHHHHcCCeEEEEeCCCchhhh------HHHHHhCCCEE-----e-CCcEEEEECCEEEEEECCccc-ccCCHHHHHH
Confidence 555553 34899999999997421 11222221100 0 112346778887777755322 1234666666
Q ss_pred HHHhcccCCCCCCeEEEEcCCCccccCCC-------------Ccch---hHHHHHHHHHHHHHcCCcEEEeCccccceec
Q 039280 326 ESDLGDVDREVTPWLIAAWHPPWYSTYSA-------------HYRE---VECMRVEMEDLLYYYGVDIVFNGHVHAYERS 389 (487)
Q Consensus 326 ~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~-------------~~~~---~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~ 389 (487)
++.+++ ||...++|.+++..... .... .....+.+.+++++++++++++||+|.-...
T Consensus 129 r~~~r~------~~~~~~~~~~p~~~~~~ia~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~ 202 (241)
T PRK05340 129 RRKVRN------PWLQWLFLALPLSIRLRIAAKMRAKSKAANQSKSLEIMDVNPEAVAALMEKHGVDTLIHGHTHRPAIH 202 (241)
T ss_pred HHHHhC------HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCcccccCCCHHHHHHHHHHhCCCEEEECcccCccee
Confidence 666654 12333344443321000 0000 0001246778899999999999999986543
Q ss_pred ccccCCccCCCCcEEEEeCCccc
Q 039280 390 NRVYNYSLDPCGPVYILVGDGGN 412 (487)
Q Consensus 390 ~p~~~~~~~~~g~vyIv~G~gG~ 412 (487)
.+.+ +..+..|++-|+...
T Consensus 203 -~~~~---~~~~~~~~~lgdw~~ 221 (241)
T PRK05340 203 -QLQA---GGQPATRIVLGDWHE 221 (241)
T ss_pred -eccC---CCcceEEEEeCCCCC
Confidence 1111 111247899999854
No 40
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=99.00 E-value=7.6e-09 Score=93.45 Aligned_cols=37 Identities=27% Similarity=0.333 Sum_probs=27.7
Q ss_pred cEEEEEecCCCCCChHHH-HHHHHHc-CCCEEEEcCccc
Q 039280 173 NRIAVVGDLGLTYNTTTT-VAHLMSN-HPDLLLLIGDLS 209 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~~~~-l~~l~~~-~pdfvl~~GDl~ 209 (487)
+|++++||+|......+. ++.+... ++|.|+++||++
T Consensus 1 m~i~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~ 39 (158)
T TIGR00040 1 MKILVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT 39 (158)
T ss_pred CEEEEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC
Confidence 589999999976543333 3444455 799999999997
No 41
>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain. YfcE is a manganase-dependent metallophosphatase, found in bacteria and archaea, that cleaves bis-p-nitrophenyl phosphate, thymidine 5'-monophosphate-p-nitrophenyl ester, and p-nitrophenyl phosphorylcholine, but is unable to hydrolyze 2',3 ' or 3',5' cyclic nucleic phosphodiesters, and various phosphomonoesters, including p-nitrophenyl phosphate. This family also includes the Bacilus subtilis YsnB and Methanococcus jannaschii MJ0936 proteins. This domain family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid ph
Probab=98.96 E-value=4.3e-09 Score=94.58 Aligned_cols=56 Identities=21% Similarity=0.150 Sum_probs=37.8
Q ss_pred EEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCccCCCCcEEEEeCCccc
Q 039280 340 LIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGN 412 (487)
Q Consensus 340 ~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~ 412 (487)
+|++.|.+....... . + . ..++.+.++|++++||+|..... ..+++++|..|+.|.
T Consensus 77 ~i~v~Hg~~~~~~~~----~---~-~-~~~~~~~~~d~vi~GHtH~~~~~--------~~~~~~~inpGs~~~ 132 (155)
T cd00841 77 RIFLTHGHLYGVKNG----L---D-R-LYLAKEGGADVVLYGHTHIPVIE--------KIGGVLLLNPGSLSL 132 (155)
T ss_pred EEEEECCcccccccc----h---h-h-hhhhhhcCCCEEEECcccCCccE--------EECCEEEEeCCCccC
Confidence 677888776543211 0 1 1 45567789999999999976443 135788888888776
No 42
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=98.95 E-value=4.6e-09 Score=97.15 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=31.5
Q ss_pred EEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceec
Q 039280 341 IAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERS 389 (487)
Q Consensus 341 Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~ 389 (487)
|+++|.|+..... ..+..++.++.++++|+||.|.+.+.
T Consensus 112 i~lsH~P~~~~~~----------~~~~~~~~~~~p~~Ifs~H~H~s~~~ 150 (195)
T cd08166 112 IMLSHVPLLAEGG----------QALKHVVTDLDPDLIFSAHRHKSSIF 150 (195)
T ss_pred eeeeccccccccc----------HHHHHHHHhcCceEEEEcCccceeeE
Confidence 9999999865321 25668889999999999999998765
No 43
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=98.92 E-value=2.1e-08 Score=104.84 Aligned_cols=179 Identities=17% Similarity=0.264 Sum_probs=104.4
Q ss_pred HHHHHHHHc--CCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhccccCCCEEEecCCccc
Q 039280 189 TTVAHLMSN--HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEI 266 (487)
Q Consensus 189 ~~l~~l~~~--~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~ 266 (487)
.+|++|++. ++|||+++||++-.+.+. ...+.--.......+.|......+|+++++||||.
T Consensus 199 s~L~~ike~~~~iD~I~wTGD~~~H~~w~----------------~t~~~~l~~~~~l~~~~~e~FpdvpvypalGNhe~ 262 (577)
T KOG3770|consen 199 SALDHIKENHKDIDYIIWTGDNVAHDVWA----------------QTEEENLSMLSRLTSLLSEYFPDVPVYPALGNHEI 262 (577)
T ss_pred HHHHHHHhcCCCCCEEEEeCCCCcccchh----------------hhHHHHHHHHHHHHHHHHHhCCCCceeeecccCCC
Confidence 356666654 489999999999654221 11111112223344556677789999999999998
Q ss_pred ccCcc------ch------hhHHhhccc--CCCCCCC-CCCCcceEEE-EeCCEEEEEEcCcccC----------CCChH
Q 039280 267 ERQAE------NQ------TFAAYSSRF--AFPSEES-GSSSSLYYSF-NAGGIHFVMLSAYIDY----------DKSSD 320 (487)
Q Consensus 267 ~~~~~------~~------~~~~y~~~f--~~P~~~~-~~~~~~yYsf-~~g~v~fi~Ldt~~~~----------~~~~~ 320 (487)
..... .+ .|.++...| .+|.... ....+.+|.- -++|.++|+||+..-+ .....
T Consensus 263 ~P~N~F~~~~~~~~~~~~wly~~~~~~W~~wlp~e~~~t~~kga~Y~~~~~~Glr~IslNt~~c~~~N~~L~~n~tdp~~ 342 (577)
T KOG3770|consen 263 HPVNLFAPGSVPKRHSQLWLYKHLAGAWSTWLPAEAKETFLKGAYYLVLVIDGLRLISLNTNYCSAPNFWLYANQTDPID 342 (577)
T ss_pred CcHhhcCCCCCcchhhhhHHHHHHHhhhhccCCHHHHhhhhcCcEEEEeecCCceEEEeccccccccceeeeecCCCchH
Confidence 63210 00 111221111 1333211 1234456643 4689999999985322 12578
Q ss_pred HHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcC--CcEEEeCccccceec
Q 039280 321 QYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYG--VDIVFNGHVHAYERS 389 (487)
Q Consensus 321 Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~--VdlvlsGH~H~yeR~ 389 (487)
|++|+..+|.++..+... |-+++|.|+-.. .. .+.....+-.++.++. +.-.|.||.|.-+-.
T Consensus 343 ~lqWf~~~L~~ae~~Gek-Vhil~HIPpG~~---~c--~~~ws~~f~~iv~r~~~tI~gqf~GH~h~d~f~ 407 (577)
T KOG3770|consen 343 QLQWFVDQLQEAESAGEK-VHILGHIPPGDG---VC--LEGWSINFYRIVNRFRSTIAGQFYGHTHIDEFR 407 (577)
T ss_pred HhhHHHHHHHHHHhcCCE-EEEEEeeCCCCc---ch--hhhhhHHHHHHHHHHHHhhhhhccccCcceeEE
Confidence 899999999987544433 788899997531 11 1112234445555553 334599999987644
No 44
>cd07403 MPP_TTHA0053 Thermus thermophilus TTHA0053 and related proteins, metallophosphatase domain. TTHA0053 is an uncharacterized Thermus thermophilus protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.88 E-value=1.2e-08 Score=89.07 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=32.5
Q ss_pred EEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceec
Q 039280 340 LIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERS 389 (487)
Q Consensus 340 ~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~ 389 (487)
.|+++|+|++...... .....-.+.+.+++.+++++++|+||+|.....
T Consensus 58 ~Ilv~H~pp~~~~~~~-~~~~~g~~~l~~~l~~~~~~~vl~GH~H~~~~~ 106 (129)
T cd07403 58 DILLTHAPPAGIGDGE-DFAHRGFEAFLDFIDRFRPKLFIHGHTHLNYGY 106 (129)
T ss_pred CEEEECCCCCcCcCcc-cccccCHHHHHHHHHHHCCcEEEEcCcCCCcCc
Confidence 5788888876432211 000112456778888999999999999976554
No 45
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=98.87 E-value=4.4e-08 Score=91.08 Aligned_cols=191 Identities=20% Similarity=0.247 Sum_probs=112.5
Q ss_pred CcEEEEEecCCCCCCh-HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhc
Q 039280 172 PNRIAVVGDLGLTYNT-TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQP 250 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~~-~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~ 250 (487)
.+|+++++|+|..... .+.+..+...++|+++.+||++|.. .+.+. ..-+..| ++.
T Consensus 3 ~mkil~vtDlHg~~~~~~k~~~~~~~~~~D~lviaGDlt~~~----~~~~~-------------~~~~~~~------~e~ 59 (226)
T COG2129 3 KMKILAVTDLHGSEDSLKKLLNAAADIRADLLVIAGDLTYFH----FGPKE-------------VAEELNK------LEA 59 (226)
T ss_pred cceEEEEeccccchHHHHHHHHHHhhccCCEEEEecceehhh----cCchH-------------HHHhhhH------HHH
Confidence 5899999999987543 3444555556899999999999532 12210 0000001 333
Q ss_pred c-ccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcc------cCCCChHH-H
Q 039280 251 L-VSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYI------DYDKSSDQ-Y 322 (487)
Q Consensus 251 l-~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~------~~~~~~~Q-~ 322 (487)
+ ...+|+++++||-|-. .... ......... -+ -+.+++++.|+.+.... .+...+++ +
T Consensus 60 l~~~~~~v~avpGNcD~~-----~v~~-~l~~~~~~v------~~--~v~~i~~~~~~G~Ggsn~tp~nt~~e~~E~~I~ 125 (226)
T COG2129 60 LKELGIPVLAVPGNCDPP-----EVID-VLKNAGVNV------HG--RVVEIGGYGFVGFGGSNPTPFNTPREFSEDEIY 125 (226)
T ss_pred HHhcCCeEEEEcCCCChH-----HHHH-HHHhccccc------cc--ceEEecCcEEEEecccCCCCCCCccccCHHHHH
Confidence 3 3589999999998763 1111 111121111 01 45788888888864321 11223333 3
Q ss_pred HHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcch-hHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCccCCCC
Q 039280 323 KWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYRE-VECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCG 401 (487)
Q Consensus 323 ~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~-~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g 401 (487)
.-|++-+++.+... .|+++|.|+|......... ...-.+.+.+++++.++-+.+|||.|.+.-.-. -..
T Consensus 126 s~l~~~v~~~~~~~---~Il~~HaPP~gt~~d~~~g~~hvGS~~vr~~ieefqP~l~i~GHIHEs~G~d~-------iG~ 195 (226)
T COG2129 126 SKLKSLVKKADNPV---NILLTHAPPYGTLLDTPSGYVHVGSKAVRKLIEEFQPLLGLHGHIHESRGIDK-------IGN 195 (226)
T ss_pred HHHHHHHhcccCcc---eEEEecCCCCCccccCCCCccccchHHHHHHHHHhCCceEEEeeecccccccc-------cCC
Confidence 44555555543111 3999999999865442111 122356788999999999999999998544321 235
Q ss_pred cEEEEeCC
Q 039280 402 PVYILVGD 409 (487)
Q Consensus 402 ~vyIv~G~ 409 (487)
++.|.-|.
T Consensus 196 TivVNPG~ 203 (226)
T COG2129 196 TIVVNPGP 203 (226)
T ss_pred eEEECCCC
Confidence 66666665
No 46
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=98.85 E-value=6.8e-08 Score=89.61 Aligned_cols=193 Identities=22% Similarity=0.331 Sum_probs=89.6
Q ss_pred CcEEEEEecCCCCCCh-HHHHHHHHHcCCCEEEEcCccccccccccCCCcccccc-c----cCCC-Ccccc--hhhH-HH
Q 039280 172 PNRIAVVGDLGLTYNT-TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYL-C----QSIE-SPIQE--TYQP-RW 241 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~~-~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~-~----~~~~-~~~~~--~y~~-~w 241 (487)
+=|+++++|.+..... .+.+..+.+..||+|+++||+.-.. ...+.|. . ..++ ..+.+ .|+. ..
T Consensus 5 ~~kilA~s~~~g~~e~l~~l~~~~~e~~~D~~v~~G~~~~~~------a~~~e~~~a~~~~r~p~k~~i~~e~~~~~e~~ 78 (255)
T PF14582_consen 5 VRKILAISNFRGDFELLERLVEVIPEKGPDAVVFVGDLLKAE------ARSDEYERAQEEQREPDKSEINEEECYDSEAL 78 (255)
T ss_dssp --EEEEEE--TT-HHHHHHHHHHHHHHT-SEEEEES-SS-TC------HHHHHHHHHHHTT----THHHHHHHHHHHHHH
T ss_pred chhheeecCcchHHHHHHHHHhhccccCCCEEEEeccccccc------hhhhHHHHHhhhccCcchhhhhhhhhhhHHHH
Confidence 3489999999765332 2344445567999999999998421 1111110 0 0000 00000 0100 12
Q ss_pred HHHHHhhhccccCCCEEEecCCcccccCccchhh--HHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccC-CC-
Q 039280 242 DYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTF--AAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDY-DK- 317 (487)
Q Consensus 242 ~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~--~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~-~~- 317 (487)
+.|++.+..+ .+|.+++|||||... ..| ..|....-.|.-- .-...+.+--|...|+.+..+.-- ..
T Consensus 79 ~~ff~~L~~~--~~p~~~vPG~~Dap~----~~~lr~a~~~e~v~p~~~---~vH~sf~~~~g~y~v~G~GGeI~~~~~~ 149 (255)
T PF14582_consen 79 DKFFRILGEL--GVPVFVVPGNMDAPE----RFFLREAYNAEIVTPHIH---NVHESFFFWKGEYLVAGMGGEITDDQRE 149 (255)
T ss_dssp HHHHHHHHCC---SEEEEE--TTS-SH----HHHHHHHHHCCCC-TTEE---E-CTCEEEETTTEEEEEE-SEEESSS-B
T ss_pred HHHHHHHHhc--CCcEEEecCCCCchH----HHHHHHHhccceecccee---eeeeeecccCCcEEEEecCccccCCCcc
Confidence 3566666554 899999999999742 111 1222222122100 000112233445888888764311 10
Q ss_pred -------ChHHHHHHHHHhcccCCCCCCeEEEEcCCCc-cccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccce
Q 039280 318 -------SSDQYKWLESDLGDVDREVTPWLIAAWHPPW-YSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYE 387 (487)
Q Consensus 318 -------~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~-y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~ye 387 (487)
.....+|..+.|..++ .. -+|+++|.|+ ......+.+ .+.+.+++++|+.++||+||.|.-.
T Consensus 150 ~~~~LrYP~weaey~lk~l~elk--~~-r~IlLfhtpPd~~kg~~h~G-----S~~V~dlIk~~~P~ivl~Ghihe~~ 219 (255)
T PF14582_consen 150 EEFKLRYPAWEAEYSLKFLRELK--DY-RKILLFHTPPDLHKGLIHVG-----SAAVRDLIKTYNPDIVLCGHIHESH 219 (255)
T ss_dssp CSSS-EEEHHHHHHHHGGGGGCT--SS-EEEEEESS-BTBCTCTBTTS-----BHHHHHHHHHH--SEEEE-SSS-EE
T ss_pred ccccccchHHHHHHHHHHHHhcc--cc-cEEEEEecCCccCCCccccc-----HHHHHHHHHhcCCcEEEecccccch
Confidence 1223455566666652 22 3788899998 433222222 2577799999999999999999754
No 47
>COG1768 Predicted phosphohydrolase [General function prediction only]
Probab=98.85 E-value=2.9e-08 Score=88.27 Aligned_cols=64 Identities=23% Similarity=0.266 Sum_probs=45.3
Q ss_pred CCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCccCCCCcEEEEeCCc
Q 039280 336 VTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDG 410 (487)
Q Consensus 336 ~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~g 410 (487)
...-+|||.|.|+++..... ..+.+++++++|+.++.||.|.-.|-.+-.. +-.|+.|+.+-+-
T Consensus 157 ~~~~fivM~HYPP~s~~~t~--------~~~sevlee~rv~~~lyGHlHgv~~p~~~~s---~v~Gi~y~LvaaD 220 (230)
T COG1768 157 GVSKFIVMTHYPPFSDDGTP--------GPFSEVLEEGRVSKCLYGHLHGVPRPNIGFS---NVRGIEYMLVAAD 220 (230)
T ss_pred CcCeEEEEEecCCCCCCCCC--------cchHHHHhhcceeeEEeeeccCCCCCCCCcc---cccCceEEEEecc
Confidence 33458999999998754321 3566788899999999999998877543221 3358888776553
No 48
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=98.84 E-value=1.4e-08 Score=91.51 Aligned_cols=31 Identities=32% Similarity=0.571 Sum_probs=24.3
Q ss_pred EEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceec
Q 039280 341 IAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERS 389 (487)
Q Consensus 341 Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~ 389 (487)
|++.|.|.+. ++.+++++++|+||+|...+.
T Consensus 107 ~~l~H~p~~~------------------~~~~~~~~~~l~GH~H~~~~~ 137 (156)
T cd08165 107 ILLQHFPLYR------------------LLQWLKPRLVLSGHTHSFCEV 137 (156)
T ss_pred eeeeCChHHH------------------HHHhhCCCEEEEcccCCCcee
Confidence 8889999732 556678899999999986554
No 49
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=98.84 E-value=8.6e-08 Score=92.20 Aligned_cols=184 Identities=15% Similarity=0.156 Sum_probs=96.1
Q ss_pred EEEecCCCCCCh----HHHHHHHHH--cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhh
Q 039280 176 AVVGDLGLTYNT----TTTVAHLMS--NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQ 249 (487)
Q Consensus 176 ~v~gD~~~~~~~----~~~l~~l~~--~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~ 249 (487)
++++|+|.+... ...++.+.+ .+||+|+++||++. .+..... . ....+.+.+.++
T Consensus 2 ~~iSDlHl~~~~~~~~~~~l~~l~~~~~~~d~lii~GDi~d--~~~~~~~-------------~----~~~~~~~~~~l~ 62 (231)
T TIGR01854 2 LFISDLHLSPERPDITALFLDFLREEARKADALYILGDLFE--AWIGDDD-------------P----STLARSVAQAIR 62 (231)
T ss_pred eEEEecCCCCCChhHHHHHHHHHHhhhccCCEEEEcCceec--cccCCCC-------------C----CHHHHHHHHHHH
Confidence 689999987542 234555544 37999999999994 2210000 0 011233444555
Q ss_pred cccc-CCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCChH--------
Q 039280 250 PLVS-NVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSSD-------- 320 (487)
Q Consensus 250 ~l~~-~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~~-------- 320 (487)
.+.. .+|+++++||||.... . .+.....+.. .. ....+.+++.+++++-.-... ..+.
T Consensus 63 ~L~~~~~~v~~v~GNHD~~~~---~---~~~~~~gi~~-----l~-~~~~~~~~g~~ill~HGd~~~-~~d~~y~~~r~~ 129 (231)
T TIGR01854 63 QVSDQGVPCYFMHGNRDFLIG---K---RFAREAGMTL-----LP-DPSVIDLYGQKVLLMHGDTLC-TDDTAYQAFRAK 129 (231)
T ss_pred HHHHCCCeEEEEcCCCchhhh---H---HHHHHCCCEE-----EC-CCEEEEECCEEEEEEcCcccc-CCCHHHHHHHHH
Confidence 5533 5899999999998521 1 1211111100 00 112356666666665432111 1112
Q ss_pred ----------------HHHHHHHHhcccCCCC---CCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeC
Q 039280 321 ----------------QYKWLESDLGDVDREV---TPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNG 381 (487)
Q Consensus 321 ----------------Q~~WL~~~L~~~~r~~---~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsG 381 (487)
...||.+.+.+..+.. .+ ..++.+ ..+.+++++.+++++++++|
T Consensus 130 ~r~~~~~~~~~~l~~~~r~~l~~~~~~~s~~~~~~~~-~~~~~~----------------~~~~~~~~~~~~~~~~~i~G 192 (231)
T TIGR01854 130 VHQPWLQRLFLHLPLAVRVKLARKIRAESRADKQMKS-QDIMDV----------------NPAEVAAVMRRYGVDRLIHG 192 (231)
T ss_pred HhCHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCCCc-chhhCC----------------CHHHHHHHHHHcCCCEEEEC
Confidence 2333434333321100 00 011111 12346778888999999999
Q ss_pred ccccceecccccCCccCCCCcEEEEeCCccc
Q 039280 382 HVHAYERSNRVYNYSLDPCGPVYILVGDGGN 412 (487)
Q Consensus 382 H~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~ 412 (487)
|+|.-... ++.. +..+..|++.|+.-.
T Consensus 193 HtH~~~~~-~~~~---~~~~~~~~~lgdW~~ 219 (231)
T TIGR01854 193 HTHRPAIH-PLQA---DGQPATRIVLGDWYR 219 (231)
T ss_pred CccCccee-eccc---CCCccEEEEECCCcc
Confidence 99987644 3211 223568999999853
No 50
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=98.82 E-value=4.2e-08 Score=89.82 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=26.3
Q ss_pred EEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecc
Q 039280 341 IAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSN 390 (487)
Q Consensus 341 Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~ 390 (487)
|++.|.|.+. ++.+.+++++|+||+|.+.+..
T Consensus 119 i~l~H~p~~~------------------~~~~~~~~~~lsGH~H~~~~~~ 150 (171)
T cd07384 119 ILLTHIPLYR------------------LLDTIKPVLILSGHDHDQCEVV 150 (171)
T ss_pred eeEECCccHH------------------HHhccCceEEEeCcccCCeEEE
Confidence 8999999642 6677899999999999986663
No 51
>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain. Vps29 (vacuolar sorting protein 29), also known as vacuolar membrane protein Pep11, is a subunit of the retromer complex which is responsible for the retrieval of mannose-6-phosphate receptors (MPRs) from the endosomes for retrograde transport back to the Golgi. Vps29 has a phosphoesterase fold that acts as a protein interaction scaffold for retromer complex assembly as well as a phosphatase with specificity for the cytoplasmic tail of the MPR. The retromer includes the following 5 subunits: Vps35, Vps26, Vps29, and a dimer of the sorting nexins Vps5 (Snx1), and Vps17 (Snx2). Vps29 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily incl
Probab=98.75 E-value=2.8e-07 Score=84.90 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=30.0
Q ss_pred HHHHHHHHcCCcEEEeCccccceecccccCCccCCCCcEEEEeCCccc
Q 039280 365 EMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGN 412 (487)
Q Consensus 365 ~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~ 412 (487)
.+..++++.++|++++||+|...... .+|.++|..|+.|.
T Consensus 97 ~~~~~~~~~~~dvii~GHTH~p~~~~--------~~g~~viNPGSv~~ 136 (178)
T cd07394 97 SLAALQRQLDVDILISGHTHKFEAFE--------HEGKFFINPGSATG 136 (178)
T ss_pred HHHHHHHhcCCCEEEECCCCcceEEE--------ECCEEEEECCCCCC
Confidence 34455667889999999999765431 35788899999875
No 52
>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues l
Probab=98.69 E-value=8.1e-08 Score=91.12 Aligned_cols=198 Identities=15% Similarity=0.179 Sum_probs=99.9
Q ss_pred EEEecCCCCCChH---HHHHHHHH----cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhh
Q 039280 176 AVVGDLGLTYNTT---TTVAHLMS----NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYM 248 (487)
Q Consensus 176 ~v~gD~~~~~~~~---~~l~~l~~----~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~ 248 (487)
++++|+|.+.... ..+..+.+ .+++.++++||+.. .+..... .... .....+...+
T Consensus 1 ~~iSDlHlg~~~~~~~~~~~~~~~~~~~~~~~~lvl~GDi~d--~~~~~~~------------~~~~---~~~~~~~~l~ 63 (217)
T cd07398 1 LFISDLHLGDGGPAADFLLLFLLAALALGEADALYLLGDIFD--LWFGDDE------------VVPP---AAHEVLAALL 63 (217)
T ss_pred CEeeeecCCCCCCCHHHHHHHHHhhhccCCCCEEEEeccEEE--EEecCCC------------CCCh---HHHHHHHHHH
Confidence 4789999875432 22333333 48999999999994 2211000 0000 1111123334
Q ss_pred hccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCChHHHHHHHHH
Q 039280 249 QPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSSDQYKWLESD 328 (487)
Q Consensus 249 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~~Q~~WL~~~ 328 (487)
+.+....+++.++||||.... ..+........ .......+.+++.+++++-... ++.....+.|+...
T Consensus 64 ~~~~~~~~v~~v~GNHD~~~~------~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~HG~~-~d~~~~~~~~~~~~ 131 (217)
T cd07398 64 RLADRGTRVYYVPGNHDFLLG------DFFAEELGLIL-----LPDPLVHLELDGKRILLEHGDQ-FDTDDRAYQLLRRL 131 (217)
T ss_pred HHHHCCCeEEEECCCchHHHH------hHHHHHcCCEE-----eccceEEEeeCCeEEEEECCCc-CchhHHHHHHHHHH
Confidence 444568899999999998521 11111111100 0111215778888888887643 23344555555554
Q ss_pred hcccCC------CCCCeEEEEcCCCcccc----C--CCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCc
Q 039280 329 LGDVDR------EVTPWLIAAWHPPWYST----Y--SAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYS 396 (487)
Q Consensus 329 L~~~~r------~~~~w~Iv~~H~P~y~~----~--~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~ 396 (487)
+..... ....|..-+.......+ . ...........+.+..++.+++++++++||+|......
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~GH~H~~~~~~------ 205 (217)
T cd07398 132 GRNPYDQLLFLNRPLNRRRGIAGGLRWSSRYLKKKVKKAVAIIDVFEEAVARLARRKGVDGVICGHTHRPALHE------ 205 (217)
T ss_pred hCcHHHHHHHhcchHHHHHHHHHhhhhhhHHHHhCccchHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCCeEE------
Confidence 332100 00000000000000000 0 00001122334566677888999999999999876542
Q ss_pred cCCCCcEEEEeCCc
Q 039280 397 LDPCGPVYILVGDG 410 (487)
Q Consensus 397 ~~~~g~vyIv~G~g 410 (487)
..+..|+.+|+.
T Consensus 206 --~~~~~~~n~G~W 217 (217)
T cd07398 206 --LDGKLYINLGDW 217 (217)
T ss_pred --ECCEEEEECCCC
Confidence 236788988873
No 53
>cd00845 MPP_UshA_N_like Escherichia coli UshA-like family, N-terminal metallophosphatase domain. This family includes the bacterial enzyme UshA, and related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich
Probab=98.69 E-value=1.9e-07 Score=90.95 Aligned_cols=193 Identities=18% Similarity=0.160 Sum_probs=98.9
Q ss_pred cEEEEEecCCCCC-------Ch---HHHHHHHHHcCCC-EEEEcCccccccccccCCCccccccccCCCCcccchhhHHH
Q 039280 173 NRIAVVGDLGLTY-------NT---TTTVAHLMSNHPD-LLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRW 241 (487)
Q Consensus 173 ~~f~v~gD~~~~~-------~~---~~~l~~l~~~~pd-fvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w 241 (487)
++|++++|+|... .. ...++++.+.++| +++.+||++....... + ...
T Consensus 1 l~i~~~sD~hg~~~~~~~~~g~~~l~~~v~~~~~~~~~~l~v~~GD~~~~~~~~~--------------------~-~~~ 59 (252)
T cd00845 1 LTILHTNDLHGHFEPAGGVGGAARLATLIKEERAENENTLLLDAGDNFDGSPPST--------------------A-TKG 59 (252)
T ss_pred CEEEEecccccCccccCCcCCHHHHHHHHHHHHhcCCCeEEEeCCccCCCccchh--------------------c-cCC
Confidence 4899999999653 12 3456666667788 7799999985321100 0 001
Q ss_pred HHHHHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCC---C----C---CCCCCcceEEEEeCCEEE--EEE
Q 039280 242 DYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPS---E----E---SGSSSSLYYSFNAGGIHF--VML 309 (487)
Q Consensus 242 ~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~----~---~~~~~~~yYsf~~g~v~f--i~L 309 (487)
....+.+..+ -.-++++||||+.... +.+.........|. + . .......|.-++.+++++ +.+
T Consensus 60 ~~~~~~l~~~---g~d~~~~GNHe~d~g~--~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~~~i~~~~g~kIgiiG~ 134 (252)
T cd00845 60 EANIELMNAL---GYDAVTIGNHEFDYGL--DALAELYKDANFPVLSANLYDKDTGTGPPWAKPYKIIEVDGVKIGVIGL 134 (252)
T ss_pred cHHHHHHHhc---CCCEEeeccccccccH--HHHHHHHHhCCCCEEEEeeeccCCCCCCCCcCCeEEEEECCEEEEEEEe
Confidence 1122333322 2345778999986332 23333333333221 0 0 001123355678887554 444
Q ss_pred cCcccCC----------CChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEE
Q 039280 310 SAYIDYD----------KSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVF 379 (487)
Q Consensus 310 dt~~~~~----------~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~Vdlvl 379 (487)
.+..... ......+.+++..++. +.+...+|++.|.+... . ..+.+.+ .+||++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vIvl~H~g~~~--------~----~~la~~~--~giDlvl 199 (252)
T cd00845 135 TTPDTPTYTPLGWIIGLPFEDLAEAVAVAEELL-AEGADVIILLSHLGLDD--------D----EELAEEV--PGIDVIL 199 (252)
T ss_pred ccccceeecCCCcccCceecCHHHHHHHHHHHH-hCCCCEEEEEeccCccc--------h----HHHHhcC--CCccEEE
Confidence 4321100 0012233343322221 23456799999987643 0 1111111 5899999
Q ss_pred eCccccceecccccCCccCCCCcEEEEeCCccc
Q 039280 380 NGHVHAYERSNRVYNYSLDPCGPVYILVGDGGN 412 (487)
Q Consensus 380 sGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~ 412 (487)
+||.|....... .-++++.+-+|+=|.
T Consensus 200 ggH~H~~~~~~~------~~~~~~v~~~g~~~~ 226 (252)
T cd00845 200 GGHTHHLLEEPE------VVNGTLIVQAGKYGK 226 (252)
T ss_pred cCCcCcccCCCc------ccCCEEEEeCChhHc
Confidence 999998755311 124666676666554
No 54
>PRK09453 phosphodiesterase; Provisional
Probab=98.66 E-value=3.8e-07 Score=84.38 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=45.5
Q ss_pred cEEEEEecCCCCCCh-HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhcc
Q 039280 173 NRIAVVGDLGLTYNT-TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPL 251 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~-~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l 251 (487)
||++++||+|..... .+.++.+.+.++|.|+++||++.. +.. ....+.|+ .++..+.++.+
T Consensus 1 mri~viSD~Hg~~~~~~~~l~~~~~~~~d~ii~lGDi~~~------~~~----------~~~~~~~~--~~~~~~~l~~~ 62 (182)
T PRK09453 1 MKLMFASDTHGSLPATEKALELFAQSGADWLVHLGDVLYH------GPR----------NPLPEGYA--PKKVAELLNAY 62 (182)
T ss_pred CeEEEEEeccCCHHHHHHHHHHHHhcCCCEEEEccccccc------CcC----------CCCccccC--HHHHHHHHHhc
Confidence 589999999965322 334455556789999999999842 100 00011111 12233333332
Q ss_pred ccCCCEEEecCCcccc
Q 039280 252 VSNVPTMVIEGEHEIE 267 (487)
Q Consensus 252 ~~~~P~~~v~GNHD~~ 267 (487)
..+++.+.||||..
T Consensus 63 --~~~v~~V~GNhD~~ 76 (182)
T PRK09453 63 --ADKIIAVRGNCDSE 76 (182)
T ss_pred --CCceEEEccCCcch
Confidence 46899999999963
No 55
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=98.64 E-value=8.8e-07 Score=87.56 Aligned_cols=207 Identities=16% Similarity=0.122 Sum_probs=102.5
Q ss_pred cEEEEEecCCCCCC-----------------hHHHHHHHHHcCCCEEEE-cCccccccccccCCCccccccccCCCCccc
Q 039280 173 NRIAVVGDLGLTYN-----------------TTTTVAHLMSNHPDLLLL-IGDLSYADLYLTNGTKSSCYLCQSIESPIQ 234 (487)
Q Consensus 173 ~~f~v~gD~~~~~~-----------------~~~~l~~l~~~~pdfvl~-~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~ 234 (487)
++|++++|+|.... ....++++.+.+++.+++ +||+........- . . ..
T Consensus 1 l~il~t~D~Hg~~~~~~~~~~~~~~~gg~~~l~~~i~~~r~~~~~~l~ld~GD~~~gs~~~~~-~-----~-------~~ 67 (277)
T cd07410 1 LRILATSDLHGNLLPYDYYTDKPDASGGLARVATLIKKARAENPNTLLIDNGDTIQGSPLADY-Y-----A-------KI 67 (277)
T ss_pred CeEEEEeccccceeCccccCCCcCCccCHHHHHHHHHHHHhcCCCeEEEeCCccCCccHHHHH-h-----h-------hc
Confidence 47888888886521 123455566667887776 9999853211000 0 0 00
Q ss_pred chhhHHHHHHHHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCC---C----C-CCCCCcceEEEEeC-CEE
Q 039280 235 ETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPS---E----E-SGSSSSLYYSFNAG-GIH 305 (487)
Q Consensus 235 ~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~----~-~~~~~~~yYsf~~g-~v~ 305 (487)
+ ........+.++.+ .. -+.++||||+... ...+........+|. | . .......|.-++.+ +++
T Consensus 68 ~--~~~~~~~~~~ln~~--g~-d~~~lGNHe~d~g--~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~~~~i~~~~~g~k 140 (277)
T cd07410 68 E--DGDPHPMIAAMNAL--GY-DAGTLGNHEFNYG--LDYLDKVIKQANFPVLSANVIDADTGEPFLKPYVILERDVGVK 140 (277)
T ss_pred c--cCCCChHHHHHHhc--CC-CEEeecccCcccC--HHHHHHHHHhCCCCEEEEEEEeCCCCCcccCCEEEEEecCCCE
Confidence 0 00001123334433 23 3667899998632 233333333333331 0 0 01122346667888 866
Q ss_pred EEEEc--Cccc--C-----------CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHH
Q 039280 306 FVMLS--AYID--Y-----------DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLL 370 (487)
Q Consensus 306 fi~Ld--t~~~--~-----------~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~ 370 (487)
+-++. +... + ....+..++..++|++ .+...+|+++|........... . .+.....|.
T Consensus 141 VgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~---~~~D~IIvl~H~g~~~~~~~~~-~---~~~~~~~la 213 (277)
T cd07410 141 VGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRA---EGADVVVVLAHGGFERDLEESL-T---GENAAYELA 213 (277)
T ss_pred EEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHH---cCCCEEEEEecCCcCCCccccc-C---CccHHHHHH
Confidence 55544 3210 0 0012234555555554 3456799999988654321000 0 011222344
Q ss_pred HH-cCCcEEEeCccccceecccccCCccCCCCcEEEEeCCcccc
Q 039280 371 YY-YGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGNV 413 (487)
Q Consensus 371 ~~-~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~~ 413 (487)
++ .+||++|+||.|...... ..+++..+-+|+-|..
T Consensus 214 ~~~~~vD~IlgGHsH~~~~~~-------~~~~~~v~q~g~~g~~ 250 (277)
T cd07410 214 EEVPGIDAILTGHQHRRFPGP-------TVNGVPVVQPGNWGSH 250 (277)
T ss_pred hcCCCCcEEEeCCCccccccC-------CcCCEEEEcCChhhCE
Confidence 44 589999999999754321 1245555655655553
No 56
>cd08164 MPP_Ted1 Saccharomyces cerevisiae Ted1 and related proteins, metallophosphatase domain. Saccharomyces cerevisiae Ted1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1) is a metallophosphatase domain-containing protein which acts together with Emp24p and Erv25p in cargo exit from the ER. Ted1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the
Probab=98.63 E-value=9.5e-08 Score=88.29 Aligned_cols=31 Identities=23% Similarity=0.295 Sum_probs=24.5
Q ss_pred EEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceec
Q 039280 341 IAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERS 389 (487)
Q Consensus 341 Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~ 389 (487)
|++.|.|.+. +..+.+++++||||+|.-++.
T Consensus 129 ilL~H~P~~~------------------~~~~~~~dl~lSGHtHgGqi~ 159 (193)
T cd08164 129 ILLTHVPLYK------------------IFLEGKPGLILTGHDHEGCDY 159 (193)
T ss_pred EEEEccccee------------------ccccCCCCEEEeCccCCCeEE
Confidence 8899999764 223358899999999998776
No 57
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=98.58 E-value=8e-07 Score=86.89 Aligned_cols=194 Identities=16% Similarity=0.125 Sum_probs=99.6
Q ss_pred cEEEEEecCCCCC--------C---hHHHHHHHHHcCCC-EEEEcCccccccccccCCCccccccccCCCCcccchhhHH
Q 039280 173 NRIAVVGDLGLTY--------N---TTTTVAHLMSNHPD-LLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPR 240 (487)
Q Consensus 173 ~~f~v~gD~~~~~--------~---~~~~l~~l~~~~pd-fvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~ 240 (487)
++|+.+.|+|.-. . ....++++.+.+++ +++.+||+........ + .+
T Consensus 1 ~~il~~nd~~~~~~~~~~~~gG~~rl~~~i~~~r~~~~~~l~l~~GD~~~g~~~~~--------------------~-~~ 59 (257)
T cd07406 1 FTILHFNDVYEIAPLDGGPVGGAARFATLRKQLRKENPNTLVLFSGDVLSPSLLST--------------------A-TK 59 (257)
T ss_pred CeEEEEccceeecccCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCccCCccchh--------------------h-cC
Confidence 4677788877311 1 12345566666788 8999999984321100 0 00
Q ss_pred HHHHHHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCC---C----CC---CCCCcceEEEEeCCEEE--EE
Q 039280 241 WDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPS---E----ES---GSSSSLYYSFNAGGIHF--VM 308 (487)
Q Consensus 241 w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~----~~---~~~~~~yYsf~~g~v~f--i~ 308 (487)
.+...+.++.+ . .-+.++||||+... ...+........+|. | .. -..-+.|.-++.+++++ |.
T Consensus 60 g~~~~~~l~~l--~-~d~~~~GNHefd~g--~~~l~~~~~~~~~~~L~aNi~~~~~~~~~~~~~~~~i~~~~g~kIgviG 134 (257)
T cd07406 60 GKQMVPVLNAL--G-VDLACFGNHEFDFG--EDQLQKRLGESKFPWLSSNVFDATGGGPLPNGKESAIIERAGVKIGLLG 134 (257)
T ss_pred CccHHHHHHhc--C-CcEEeecccccccC--HHHHHHHHhhCCCCEEEEEEEECCCCcccCCCCCeEEEEECCeEEEEEE
Confidence 11222333333 2 23668999998532 233333333322221 0 00 01124577788888655 44
Q ss_pred EcCcccC------C---CChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHH-cCCcEE
Q 039280 309 LSAYIDY------D---KSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYY-YGVDIV 378 (487)
Q Consensus 309 Ldt~~~~------~---~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~-~~Vdlv 378 (487)
+.+.... . ...+-.+.+++.+++..+.+..-+|++.|.+... .. ++.++ .+||++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~~~~~~~D~iVvl~H~g~~~--------d~-------~la~~~~~iD~I 199 (257)
T cd07406 135 LVEEEWLETLTIDPEYVRYRDYVETARELVDELREQGADLIIALTHMRLPN--------DK-------RLAREVPEIDLI 199 (257)
T ss_pred EecccccccccCCCCcceEcCHHHHHHHHHHHHHhCCCCEEEEEeccCchh--------hH-------HHHHhCCCCceE
Confidence 4432110 0 0112233344433222224566799999987531 11 22223 479999
Q ss_pred EeCccccceecccccCCccCCCCcEEEEeCCccccCC
Q 039280 379 FNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGNVEG 415 (487)
Q Consensus 379 lsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~~~~ 415 (487)
|+||.|..... ..++++.+-+|+-|..-+
T Consensus 200 lgGH~H~~~~~--------~~~~t~vv~~g~~g~~vg 228 (257)
T cd07406 200 LGGHDHEYILV--------QVGGTPIVKSGSDFRTVY 228 (257)
T ss_pred EecccceeEee--------eECCEEEEeCCcCcceEE
Confidence 99999987622 124666677777766443
No 58
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=98.47 E-value=1.1e-06 Score=90.87 Aligned_cols=40 Identities=28% Similarity=0.310 Sum_probs=30.1
Q ss_pred CcEEEEEecCCCCCC---------h----HHHHHHHHHcCCCEEEEcCccccc
Q 039280 172 PNRIAVVGDLGLTYN---------T----TTTVAHLMSNHPDLLLLIGDLSYA 211 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~---------~----~~~l~~l~~~~pdfvl~~GDl~y~ 211 (487)
.+||++++|+|.+.. . .++++.+.+.++|+||++||+...
T Consensus 3 ~mKIlh~SD~HlG~~~~~~~r~~D~~~~f~eil~~a~~~~vD~VLiaGDLFd~ 55 (405)
T TIGR00583 3 TIRILVSTDNHVGYGENDPVRGDDSWNTFEEVLQIAKEQDVDMILLGGDLFHE 55 (405)
T ss_pred ceEEEEEcCCCCCCccCCchhhhhHHHHHHHHHHHHHHcCCCEEEECCccCCC
Confidence 589999999998742 1 223444456799999999999954
No 59
>cd00844 MPP_Dbr1_N Dbr1 RNA lariat debranching enzyme, N-terminal metallophosphatase domain. Dbr1 is an RNA lariat debranching enzyme that hydrolyzes 2'-5' phosphodiester bonds at the branch points of excised intron lariats. This alignment model represents the N-terminal metallophosphatase domain of Dbr1. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal s
Probab=98.46 E-value=5.3e-06 Score=80.98 Aligned_cols=188 Identities=21% Similarity=0.245 Sum_probs=99.5
Q ss_pred EEEEecCCCCCChHHHHH---HHHH---cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhh
Q 039280 175 IAVVGDLGLTYNTTTTVA---HLMS---NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYM 248 (487)
Q Consensus 175 f~v~gD~~~~~~~~~~l~---~l~~---~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~ 248 (487)
|+|.||.|.. .....+ .+.+ .++|++|++||+.-. . +....++ -.+...| ..+..|.+.+
T Consensus 1 i~v~Gd~HG~--~~~~~~~~~~~~~~~~~~~D~lI~~GDf~~~--~--~~~d~~~-------~~~p~k~-~~~~~f~~~~ 66 (262)
T cd00844 1 IAVEGCCHGE--LDKIYETLEKIEKKEGTKVDLLICCGDFQAV--R--NEADLKC-------MAVPPKY-RKMGDFYKYY 66 (262)
T ss_pred CEEEecCCcc--HHHHHHHHHHHHHhcCCCCcEEEEcCCCCCc--C--Ccchhhh-------hccchhh-hhhhhHHHHh
Confidence 5799999974 333333 3332 369999999999631 1 0110000 0011112 1234455554
Q ss_pred hcc-ccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceE-----EEEeCCEEEEEEcCccc---CC---
Q 039280 249 QPL-VSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYY-----SFNAGGIHFVMLSAYID---YD--- 316 (487)
Q Consensus 249 ~~l-~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yY-----sf~~g~v~fi~Ldt~~~---~~--- 316 (487)
+.. ...+|++++.||||... .+. . ++..+ ....+.+| .++++|++|..|..... +.
T Consensus 67 ~g~~~~p~~t~fi~GNHE~~~-----~l~----~--l~~gg-~v~~Ni~~Lg~~~v~~~~GlrIaGLsG~~~~~~~~~~~ 134 (262)
T cd00844 67 SGEKKAPILTIFIGGNHEASN-----YLW----E--LPYGG-WVAPNIYYLGYAGVVNFGGLRIAGLSGIYKSHDYRKGH 134 (262)
T ss_pred cCCccCCeeEEEECCCCCCHH-----HHH----h--hcCCC-eecCcEEEecCCCEEEECCeEEEEeccccccccccccc
Confidence 443 35778899999999631 111 1 11110 00123332 46678999999986321 11
Q ss_pred -----CChHHHHHH-------HHHhcccCCCCCCeEEEEcCCCccccCCCCcch------------h---HHHHHHHHHH
Q 039280 317 -----KSSDQYKWL-------ESDLGDVDREVTPWLIAAWHPPWYSTYSAHYRE------------V---ECMRVEMEDL 369 (487)
Q Consensus 317 -----~~~~Q~~WL-------~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~------------~---~~~r~~l~~l 369 (487)
..+.++..+ .+.|.... .. --|+++|.|+.......... . ..-...+..+
T Consensus 135 ~~~~~~t~~~~rs~y~~r~~~~~kl~~~~-~~--vDIlLSHdWP~gI~~~~~~~~l~~~~~~~~~~~~~~~~Gs~~~~~l 211 (262)
T cd00844 135 FERPPYSEDTKRSAYHVRNIEVFKLKQLK-QP--IDIFLSHDWPRGIYKHGDKKQLLRKKPFFRQDIESGTLGSPAAEEL 211 (262)
T ss_pred ccCCCCCHHHHHHhhhhhHHHHHHHHhcC-CC--CcEEEeCCCCcchhhccchHHhhhcCccchhcccccCCCCHHHHHH
Confidence 122333221 11122211 12 25999999987643211000 0 0113467789
Q ss_pred HHHcCCcEEEeCcccc-ceeccc
Q 039280 370 LYYYGVDIVFNGHVHA-YERSNR 391 (487)
Q Consensus 370 ~~~~~VdlvlsGH~H~-yeR~~p 391 (487)
+++.+....|+||.|. |++..|
T Consensus 212 l~~lkPryhf~gH~H~~f~~~~~ 234 (262)
T cd00844 212 LKHLKPRYWFSAHLHVKFAALVP 234 (262)
T ss_pred HHHhCCCEEEEecCCcccceecC
Confidence 9999999999999998 666644
No 60
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=98.42 E-value=1.1e-06 Score=91.20 Aligned_cols=74 Identities=19% Similarity=0.241 Sum_probs=50.1
Q ss_pred cEEEEEecCCCCC-C-------------hHHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhh
Q 039280 173 NRIAVVGDLGLTY-N-------------TTTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQ 238 (487)
Q Consensus 173 ~~f~v~gD~~~~~-~-------------~~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~ 238 (487)
|||++.+|+|.+. . ....++.+.+.++||||++||+...... +.
T Consensus 1 mkilHtSD~HLG~~~~~~~~r~~d~~~~f~~~l~~a~~~~vD~vliAGDlFd~~~P-----------------s~----- 58 (390)
T COG0420 1 MKILHTSDWHLGSKQLNLPSRLEDQKKAFDELLEIAKEEKVDFVLIAGDLFDTNNP-----------------SP----- 58 (390)
T ss_pred CeeEEecccccchhhccCccchHHHHHHHHHHHHHHHHccCCEEEEccccccCCCC-----------------CH-----
Confidence 6999999999982 1 1234555567899999999999953211 00
Q ss_pred HHHHHHHHhhhcc-ccCCCEEEecCCccccc
Q 039280 239 PRWDYWGRYMQPL-VSNVPTMVIEGEHEIER 268 (487)
Q Consensus 239 ~~w~~~~~~~~~l-~~~~P~~~v~GNHD~~~ 268 (487)
..-..+.+.++.+ ..++|++++.||||...
T Consensus 59 ~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~ 89 (390)
T COG0420 59 RALKLFLEALRRLKDAGIPVVVIAGNHDSPS 89 (390)
T ss_pred HHHHHHHHHHHHhccCCCcEEEecCCCCchh
Confidence 1112344555555 35899999999999853
No 61
>cd07411 MPP_SoxB_N Thermus thermophilus SoxB and related proteins, N-terminal metallophosphatase domain. SoxB (sulfur oxidation protein B) is a periplasmic thiosulfohydrolase and an essential component of the sulfur oxidation pathway in archaea and bacteria. SoxB has a dinuclear manganese cluster and is thought to catalyze the release of sulfate from a protein-bound cysteine S-thiosulfonate. SoxB is expressed from the sox (sulfur oxidation) gene cluster, which encodes 15 other sox genes, and has two domains, an N-terminal metallophosphatase domain and a C-terminal 5'-nucleotidase domain. SoxB binds the SoxYZ complex and is thought to function as a sulfate-thiohydrolase. SoxB is closely related to the UshA, YchR, and CpdB proteins, all of which have the same two-domain architecture. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzy
Probab=98.41 E-value=3.9e-06 Score=82.35 Aligned_cols=178 Identities=15% Similarity=0.136 Sum_probs=88.9
Q ss_pred HHHHHHHHc-CCCEE-EEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhccccCCCEEEecCCccc
Q 039280 189 TTVAHLMSN-HPDLL-LLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEI 266 (487)
Q Consensus 189 ~~l~~l~~~-~pdfv-l~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~ 266 (487)
..++++.+. .+|.+ +.+||+....... .........+.+.. +++.++.||||+
T Consensus 40 ~~v~~~~~~~~~~~l~l~~GD~~~gs~~~---------------------~~~~g~~~~~~l~~----~g~da~~GNHef 94 (264)
T cd07411 40 TLIKRIRAERNPNTLLLDGGDTWQGSGEA---------------------LYTRGQAMVDALNA----LGVDAMVGHWEF 94 (264)
T ss_pred HHHHHHHHhcCCCeEEEeCCCccCCChHH---------------------hhcCChhHHHHHHh----hCCeEEeccccc
Confidence 345566666 89977 5799999532110 00111122233332 455555599998
Q ss_pred ccCccchhhHHhhcccCCCCCCC-------C-CCCcceEEEEeCCEE--EEEEcCcccCC--C--------ChHHHHHHH
Q 039280 267 ERQAENQTFAAYSSRFAFPSEES-------G-SSSSLYYSFNAGGIH--FVMLSAYIDYD--K--------SSDQYKWLE 326 (487)
Q Consensus 267 ~~~~~~~~~~~y~~~f~~P~~~~-------~-~~~~~yYsf~~g~v~--fi~Ldt~~~~~--~--------~~~Q~~WL~ 326 (487)
... ...+....+.+.+|.-.. + ..-..|.-++.++++ ||.+.+..... . .....+.++
T Consensus 95 d~g--~~~l~~~~~~~~~~~l~aN~~~~~~~~~~~~~~~i~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (264)
T cd07411 95 TYG--PERVRELFGRLNWPFLAANVYDDEAGERVFPPYRIKEVGGVKIGVIGQTFPYVPIANPPRFTPGLTFGIREEELQ 172 (264)
T ss_pred ccC--HHHHHHHHhhCCCCEEEEEEEeCCCCCcccCCEEEEEECCEEEEEEEeccCCcccccCcCCCCCcEECCHHHHHH
Confidence 632 233344444443332000 0 111235566888755 55555421100 0 122344444
Q ss_pred HHhccc-CCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHH-cCCcEEEeCccccceecccccCCccCCCCcEE
Q 039280 327 SDLGDV-DREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYY-YGVDIVFNGHVHAYERSNRVYNYSLDPCGPVY 404 (487)
Q Consensus 327 ~~L~~~-~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~-~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vy 404 (487)
+.+++. +..+...+|++.|-+... .. .+.++ .+||++|+||.|..... |+ ..-++++.
T Consensus 173 ~~~~~~~~~~~~D~iI~l~H~g~~~--------~~-------~la~~~~~iDlilgGH~H~~~~~-~~----~~~~~t~v 232 (264)
T cd07411 173 EVVVKLRREEGVDVVVLLSHNGLPV--------DV-------ELAERVPGIDVILSGHTHERTPK-PI----IAGGGTLV 232 (264)
T ss_pred HHHHHHHHhCCCCEEEEEecCCchh--------hH-------HHHhcCCCCcEEEeCcccccccC-cc----cccCCEEE
Confidence 443322 113456799999987532 11 12222 47999999999975332 21 11256676
Q ss_pred EEeCCcccc
Q 039280 405 ILVGDGGNV 413 (487)
Q Consensus 405 Iv~G~gG~~ 413 (487)
+-+|.-|..
T Consensus 233 ~~~g~~~~~ 241 (264)
T cd07411 233 VEAGSHGKF 241 (264)
T ss_pred EEcCccccE
Confidence 777776654
No 62
>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.35 E-value=1.3e-06 Score=82.28 Aligned_cols=192 Identities=19% Similarity=0.264 Sum_probs=101.1
Q ss_pred EEecCCCCCChHH---HHHH-HHHc--CCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhc
Q 039280 177 VVGDLGLTYNTTT---TVAH-LMSN--HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQP 250 (487)
Q Consensus 177 v~gD~~~~~~~~~---~l~~-l~~~--~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~ 250 (487)
+++|+|.+..... .+.. |... +.|.++++||++ +.|. |.. .+.+.-++....+..
T Consensus 2 FISDlHL~~~~p~~t~~fl~Fl~~~a~~ad~lyilGDif--d~w~--g~~---------------~~~~~~~~V~~~l~~ 62 (237)
T COG2908 2 FISDLHLGPKRPALTAFFLDFLREEAAQADALYILGDIF--DGWI--GDD---------------EPPQLHRQVAQKLLR 62 (237)
T ss_pred eeeccccCCCCcHHHHHHHHHHHhccccCcEEEEechhh--hhhh--cCC---------------cccHHHHHHHHHHHH
Confidence 6899999854332 2323 3333 459999999999 3442 210 011112223333333
Q ss_pred c-ccCCCEEEecCCcccccCccchhhHHhhcccC-CCCCCCCCCCcceEEEEeCCEEEEEEcCcccCCCChHHHHHHHHH
Q 039280 251 L-VSNVPTMVIEGEHEIERQAENQTFAAYSSRFA-FPSEESGSSSSLYYSFNAGGIHFVMLSAYIDYDKSSDQYKWLESD 328 (487)
Q Consensus 251 l-~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~-~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~~~~~~~~Q~~WL~~~ 328 (487)
+ ...+|++.+.||||+.- ...+...+. +- ..+.+--+++-|-+++++-.-. +.....++.|+...
T Consensus 63 ~a~~G~~v~~i~GN~Dfll------~~~f~~~~g~~~------l~~~~~~~~l~g~~~Ll~HGD~-f~t~~~~y~~~r~~ 129 (237)
T COG2908 63 LARKGTRVYYIHGNHDFLL------GKRFAQEAGGMT------LLPDPIVLDLYGKRILLAHGDT-FCTDDRAYQWFRYK 129 (237)
T ss_pred HHhcCCeEEEecCchHHHH------HHHHHhhcCceE------EcCcceeeeecCcEEEEEeCCc-ccchHHHHHHHHHH
Confidence 4 45699999999999741 112222222 10 1112223444555566654421 22345666666554
Q ss_pred hcccCCCCCCeE-EEEcCCCcc---------ccCCCCc----ch----hHHHHHHHHHHHHHcCCcEEEeCccccceecc
Q 039280 329 LGDVDREVTPWL-IAAWHPPWY---------STYSAHY----RE----VECMRVEMEDLLYYYGVDIVFNGHVHAYERSN 390 (487)
Q Consensus 329 L~~~~r~~~~w~-Iv~~H~P~y---------~~~~~~~----~~----~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~ 390 (487)
... +|. .++.+.|.. -+.+... .. .+...+...+.+++++||.+++||+|.-.-.
T Consensus 130 ~~~------~~~~~lflnl~l~~R~ri~~k~r~~s~~~k~~~~~~~~i~d~~~~~v~~~~~~~~vd~vI~GH~Hr~ai~- 202 (237)
T COG2908 130 VHW------AWLQLLFLNLPLRVRRRIAYKIRSLSSWAKKKVKKAVNIMDVNPAAVADEARRHGVDGVIHGHTHRPAIH- 202 (237)
T ss_pred ccc------HHHHHHHHHhHHHHHHHHHHHHHHhhHHhHHhhhhHHHHHHhhHHHHHHHHHHcCCCEEEecCcccHhhc-
Confidence 333 121 122233321 0000000 00 1122455667889999999999999976544
Q ss_pred cccCCccCCCCcEEEEeCCccccCC
Q 039280 391 RVYNYSLDPCGPVYILVGDGGNVEG 415 (487)
Q Consensus 391 p~~~~~~~~~g~vyIv~G~gG~~~~ 415 (487)
+-.+..||+.|+.. .++
T Consensus 203 -------~i~~~~yi~lGdW~-~~~ 219 (237)
T COG2908 203 -------NIPGITYINLGDWV-SEG 219 (237)
T ss_pred -------cCCCceEEecCcch-hcc
Confidence 34569999999998 444
No 63
>cd07408 MPP_SA0022_N Staphylococcus aureus SA0022 and related proteins, N-terminal metallophosphatase domain. SA0022 is an uncharacterized Staphylococcus aureus UshA-like protein with two putative domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. SA0022 also contains a putative C-terminal cell wall anchor domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet
Probab=98.35 E-value=5.8e-06 Score=80.83 Aligned_cols=201 Identities=17% Similarity=0.149 Sum_probs=96.6
Q ss_pred cEEEEEecCCCCCC--------h---HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHH
Q 039280 173 NRIAVVGDLGLTYN--------T---TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRW 241 (487)
Q Consensus 173 ~~f~v~gD~~~~~~--------~---~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w 241 (487)
++|+.++|+|.... . ...++++.+....+++.+||+...... .+ ....
T Consensus 1 i~il~~~D~H~~~~~~~~~~~g~~~l~~~i~~~~~~~~~l~l~~GD~~~gs~~-~~--------------------~~~g 59 (257)
T cd07408 1 ITILHTNDIHGRIDEDDNNGIGYAKLATYKKEMNKLDNDLLVDAGDAIQGLPI-SD--------------------LDKG 59 (257)
T ss_pred CEEEEeccCcccccCCCCccccHHHHHHHHHHHHhcCCEEEEeCCCcCCCchh-hh--------------------hcCC
Confidence 47899999997421 1 223444443456899999999843110 00 0001
Q ss_pred HHHHHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCC-------CC-CCcceEEEEeC-CE--EEEEEc
Q 039280 242 DYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEES-------GS-SSSLYYSFNAG-GI--HFVMLS 310 (487)
Q Consensus 242 ~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~-------~~-~~~~yYsf~~g-~v--~fi~Ld 310 (487)
....+.|..+ ..-+ .++||||+.. +.+.+..+...+.+|.-.. +. .-..|.-++.+ ++ -||.+-
T Consensus 60 ~~~~~~ln~~--g~d~-~~~GNHefd~--G~~~l~~~~~~~~~~~l~aNv~~~~~~~~~~~py~i~~~~~G~kIgviG~~ 134 (257)
T cd07408 60 ETIIKIMNAV--GYDA-VTPGNHEFDY--GLDRLKELSKEADFPFLSANVYDNDTGKRVFKPYKIKELGNGVKVGVIGLT 134 (257)
T ss_pred cHHHHHHHhc--CCcE-EccccccccC--CHHHHHHHHhhCCCCEEEEEEEEcCCCCcccCCEEEEEcCCCCEEEEEeec
Confidence 1222333332 3334 5689999863 2334444444444432100 00 11224455777 64 455554
Q ss_pred Cccc-C-C-C-------ChHHHHHHHHH-hcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEE
Q 039280 311 AYID-Y-D-K-------SSDQYKWLESD-LGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVF 379 (487)
Q Consensus 311 t~~~-~-~-~-------~~~Q~~WL~~~-L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~Vdlvl 379 (487)
+... . . . ..+-.+-+++. ..+..+.+..-+|++.|.+....... . . ...+.. .-.+||++|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~v~~l~~~~~D~iIvl~H~G~~~~~~~-~-~----~~~la~--~~~giDvIi 206 (257)
T cd07408 135 TPETATKTHPKNVKDVTFEDPIEEAKKVIVAALKAKGADVIVALGHLGVDRTSSP-W-T----STELAA--NVTGIDLII 206 (257)
T ss_pred CcCcccccCccccCCcEEecHHHHHHHHHHHHHHhCCCCEEEEEeCcCcCCCCCC-c-c----HHHHHH--hCCCceEEE
Confidence 4210 0 0 0 01112223332 11111235667999999887543211 1 1 112211 124799999
Q ss_pred eCccccceecccccCCccCCCCcEEEEeCCccc
Q 039280 380 NGHVHAYERSNRVYNYSLDPCGPVYILVGDGGN 412 (487)
Q Consensus 380 sGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~ 412 (487)
.||.|....... ..-++++.+-+|.-|.
T Consensus 207 gGH~H~~~~~~~-----~~~~~~~ivq~g~~g~ 234 (257)
T cd07408 207 DGHSHTTIEIGK-----KDGNNVLLTQTGAYLA 234 (257)
T ss_pred eCCCcccccCcc-----cccCCeEEEcCChHHc
Confidence 999998654421 0123555555555444
No 64
>cd07412 MPP_YhcR_N Bacillus subtilis YhcR endonuclease and related proteins, N-terminal metallophosphatase domain. YhcR is a Bacillus subtilis sugar-nonspecific endonuclease. It cleaves endonucleolytically to yield nucleotide 3'-monophosphate products, similar to Staphylococcus aureus micrococcal nuclease. YhcR appears to be located in the cell wall, and is thought to be a substrate for a Bacillus subtilis sortase. YhcR is the major calcium-activated nuclease of B. subtilis. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated wi
Probab=98.33 E-value=1.2e-05 Score=80.05 Aligned_cols=86 Identities=14% Similarity=0.108 Sum_probs=46.5
Q ss_pred HHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHH--cCCcEEEeCccccceecccccCCccCCC
Q 039280 323 KWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYY--YGVDIVFNGHVHAYERSNRVYNYSLDPC 400 (487)
Q Consensus 323 ~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~--~~VdlvlsGH~H~yeR~~p~~~~~~~~~ 400 (487)
+-+++.+++.+..+...+|++.|........... .+........++.+ .+||++|+||+|..... +. ...+
T Consensus 178 e~~~~~v~~lr~~~~D~IIvL~H~G~~~~~~~~~--~~~~~~~~~~l~~~~~~~iD~IlgGHsH~~~~~-~~----~~~~ 250 (288)
T cd07412 178 EAINAVAPELKAGGVDAIVVLAHEGGSTKGGDDT--CSAASGPIADIVNRLDPDVDVVFAGHTHQAYNC-TV----PAGN 250 (288)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeCCCCCCCCCCcc--ccccChhHHHHHhhcCCCCCEEEeCccCccccc-cc----cCcC
Confidence 3344443333223466799999977653221100 00011122334444 37999999999987543 11 1235
Q ss_pred CcEEEEeCCccccCC
Q 039280 401 GPVYILVGDGGNVEG 415 (487)
Q Consensus 401 g~vyIv~G~gG~~~~ 415 (487)
+++.+-+|+-|..-+
T Consensus 251 ~~~v~q~g~~g~~vg 265 (288)
T cd07412 251 PRLVTQAGSYGKAVA 265 (288)
T ss_pred CEEEEecChhhceeE
Confidence 677788887777544
No 65
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=98.23 E-value=2.1e-05 Score=71.73 Aligned_cols=38 Identities=16% Similarity=0.179 Sum_probs=29.0
Q ss_pred cEEEEEecCCCCCCh-HHHHHHHHHcCCCEEEEcCcccc
Q 039280 173 NRIAVVGDLGLTYNT-TTTVAHLMSNHPDLLLLIGDLSY 210 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~-~~~l~~l~~~~pdfvl~~GDl~y 210 (487)
++|+++||+|..... ...++.....++|+|||+||.+.
T Consensus 2 m~ilviSDtH~~~~~~~~~~~~~~~~~~d~vih~GD~~~ 40 (172)
T COG0622 2 MKILVISDTHGPLRAIEKALKIFNLEKVDAVIHAGDSTS 40 (172)
T ss_pred cEEEEEeccCCChhhhhHHHHHhhhcCCCEEEECCCcCC
Confidence 689999999987532 23334444579999999999995
No 66
>cd07382 MPP_DR1281 Deinococcus radiodurans DR1281 and related proteins, metallophosphatase domain. DR1281 is an uncharacterized Deinococcus radiodurans protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=98.22 E-value=4.2e-05 Score=74.31 Aligned_cols=190 Identities=15% Similarity=0.224 Sum_probs=99.3
Q ss_pred EEEEEecCCCCCChH---HHHHHHHH-cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhh
Q 039280 174 RIAVVGDLGLTYNTT---TTVAHLMS-NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQ 249 (487)
Q Consensus 174 ~f~v~gD~~~~~~~~---~~l~~l~~-~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~ 249 (487)
||+++||+=...... ..+.++.+ .++||++..||.+-. |.. + . ....+.|.
T Consensus 1 ~ilfigdi~g~~G~~~~~~~l~~lk~~~~~D~vi~NgEn~~g------g~g------------l----~---~~~~~~L~ 55 (255)
T cd07382 1 KILFIGDIVGKPGRKAVKEHLPKLKKEYKIDFVIANGENAAG------GKG------------I----T---PKIAKELL 55 (255)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHHCCCCEEEECCccccC------CCC------------C----C---HHHHHHHH
Confidence 588999986554433 33455543 479999999999842 110 0 0 11122333
Q ss_pred ccccCCCEEEecCCcccccCccchhhHHhhcccC---CCCCCC-CCCCcceEEEEeCCEEEEEEcC--cccCCCChHHHH
Q 039280 250 PLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFA---FPSEES-GSSSSLYYSFNAGGIHFVMLSA--YIDYDKSSDQYK 323 (487)
Q Consensus 250 ~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~---~P~~~~-~~~~~~yYsf~~g~v~fi~Ldt--~~~~~~~~~Q~~ 323 (487)
.+ .+- +++.|||++... ....+.+... .|.+-+ ......|.-++.+++++-+++- .........-++
T Consensus 56 ~~--G~D-~iTlGNH~fD~g----el~~~l~~~~~~l~~aN~~~~~pg~~~~i~~~~G~kIaVigl~g~~~~~~~~~P~~ 128 (255)
T cd07382 56 SA--GVD-VITMGNHTWDKK----EILDFIDEEPRLLRPANYPPGTPGRGYGVVEVNGKKIAVINLMGRVFMPPLDNPFR 128 (255)
T ss_pred hc--CCC-EEEecccccCcc----hHHHHHhcCcCceEeeecCCCCCCCCeEEEEECCEEEEEEEEecccCCCcCCCHHH
Confidence 22 233 456699999743 2333333221 222211 1123457778888876555542 211111122233
Q ss_pred HHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCccCCCCcE
Q 039280 324 WLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGPV 403 (487)
Q Consensus 324 WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~v 403 (487)
-+++.+++.+. ....+||.+|.-.. .+ +..+.. .-.-+||+++.||+|...-- ..+-|+|+.
T Consensus 129 ~~~~~v~~lk~-~~D~IIV~~H~g~t-------sE----k~ala~-~ldg~VdvIvGtHTHv~t~d-----~~il~~gTa 190 (255)
T cd07382 129 AADELLEELKE-EADIIFVDFHAEAT-------SE----KIALGW-YLDGRVSAVVGTHTHVQTAD-----ERILPGGTA 190 (255)
T ss_pred HHHHHHHHHhc-CCCEEEEEECCCCC-------HH----HHHHHH-hCCCCceEEEeCCCCccCCc-----cEEeeCCeE
Confidence 35555554432 45679999996421 11 122222 11335999999999975322 222368888
Q ss_pred EEEe-CCcccc
Q 039280 404 YILV-GDGGNV 413 (487)
Q Consensus 404 yIv~-G~gG~~ 413 (487)
||+. |.-|..
T Consensus 191 ~itd~Gm~G~~ 201 (255)
T cd07382 191 YITDVGMTGPY 201 (255)
T ss_pred EEecCccccCC
Confidence 8763 444443
No 67
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.21 E-value=1.1e-05 Score=86.25 Aligned_cols=204 Identities=18% Similarity=0.195 Sum_probs=103.4
Q ss_pred CCcEEEEEecCCCCCCh------HHHHHHHH---------HcCCCEEEEcCccccccccccCCCccccccccCCCCcccc
Q 039280 171 YPNRIAVVGDLGLTYNT------TTTVAHLM---------SNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQE 235 (487)
Q Consensus 171 ~~~~f~v~gD~~~~~~~------~~~l~~l~---------~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~ 235 (487)
..+++++++|+|.+... ...++.+. ..+++.++++||++...+... +... .....+
T Consensus 242 ~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDivd~~~~~p-~~~~--------~~~~~~ 312 (504)
T PRK04036 242 EKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDLVDGIGIYP-GQEE--------ELEIVD 312 (504)
T ss_pred CccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcccccccCCc-cchh--------hccchh
Confidence 36899999999977531 22344444 457999999999995311000 0000 000001
Q ss_pred hhhHHHHHHHHhhhccccCCCEEEecCCcccccCccc-h-hhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcc
Q 039280 236 TYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAEN-Q-TFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYI 313 (487)
Q Consensus 236 ~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~-~-~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~ 313 (487)
.+ .+.+.+.+.++.+...+|+++++||||....... . -...+...+... ......+ -+.+++++.++++.....
T Consensus 313 ~~-~~~~~l~~~L~~L~~~i~V~~ipGNHD~~~~~lPQ~~l~~~l~~~l~~~--~v~~lsN-P~~i~l~G~~iLl~HG~~ 388 (504)
T PRK04036 313 IY-EQYEAAAEYLKQIPEDIKIIISPGNHDAVRQAEPQPAFPEEIRSLFPEH--NVTFVSN-PALVNLHGVDVLIYHGRS 388 (504)
T ss_pred hH-HHHHHHHHHHHhhhcCCeEEEecCCCcchhhccCCCCccHHHHHhcCcC--CeEEecC-CeEEEECCEEEEEECCCC
Confidence 11 1234555667777778999999999997532111 0 011222222110 0001112 235788888888776432
Q ss_pred -----cC---CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCcccc
Q 039280 314 -----DY---DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 314 -----~~---~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~ 385 (487)
.+ .....-...|++.|+.. .-+| ..-.+.|.+...... | ++++ -.|++++||.|.
T Consensus 389 idDl~~~i~~~s~~~p~~~m~~~l~~r--HlaP--t~p~~~~~~p~~~D~----------l--vi~~-~Pdv~~~GH~H~ 451 (504)
T PRK04036 389 IDDVISLIPGASYEKPGKAMEELLKRR--HLAP--IYGGRTPIAPEKEDY----------L--VIDE-VPDIFHTGHVHI 451 (504)
T ss_pred HHHHHhhcccccccCHHHHHHHHHHhc--ccCC--CCCCCEEeCcCCCCC----------E--EEec-CCCEEEeCCCCc
Confidence 01 01123345666666542 1111 000122222211100 0 1112 359999999999
Q ss_pred ceecccccCCccCCCCcEEEEeCCccc
Q 039280 386 YERSNRVYNYSLDPCGPVYILVGDGGN 412 (487)
Q Consensus 386 yeR~~p~~~~~~~~~g~vyIv~G~gG~ 412 (487)
+.... -.|+.+|..|+.-.
T Consensus 452 ~~~~~--------~~g~~~IN~gsf~~ 470 (504)
T PRK04036 452 NGYGK--------YRGVLLINSGTWQA 470 (504)
T ss_pred cceEE--------ECCEEEEECCcccc
Confidence 76541 35788888887543
No 68
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=98.19 E-value=1.9e-05 Score=78.23 Aligned_cols=113 Identities=17% Similarity=0.236 Sum_probs=59.3
Q ss_pred EEecCCcccccCccchhhHHhhcccCCCCCCC-----C------CCCcceEEEEeCCEEE--EEEcCcccC--C------
Q 039280 258 MVIEGEHEIERQAENQTFAAYSSRFAFPSEES-----G------SSSSLYYSFNAGGIHF--VMLSAYIDY--D------ 316 (487)
Q Consensus 258 ~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~-----~------~~~~~yYsf~~g~v~f--i~Ldt~~~~--~------ 316 (487)
+.++||||+... .+.+..+.+...+|.-.. . ..-..|.-++.+++++ |.+-+.... .
T Consensus 85 ~~~lGNHefd~G--~~~l~~~~~~~~~p~l~aNv~~~~~~~~~~~~~~p~~i~~~~G~kIgviG~~~~~~~~~~~~~~~~ 162 (281)
T cd07409 85 AMTLGNHEFDDG--VEGLAPFLNNLKFPVLSANIDTSNEPPLLDGLLKPSTILTVGGEKIGIIGYTTPDTTELSSPGGKV 162 (281)
T ss_pred EEEeccccccCC--HHHHHHHHHhCCCCEEEEeeecCCCccccccccCCeEEEEECCEEEEEEEEecCcccccccCCCce
Confidence 556799999643 233444434333332100 0 0123355678888654 544432110 0
Q ss_pred CChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHH-cCCcEEEeCccccce
Q 039280 317 KSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYY-YGVDIVFNGHVHAYE 387 (487)
Q Consensus 317 ~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~-~~VdlvlsGH~H~ye 387 (487)
.-.+..+.+++.+++....+..-+|++.|-.... . . .+.++ .+||++|+||.|...
T Consensus 163 ~~~d~~~~~~~~v~~lr~~~~D~II~l~H~G~~~--------d----~---~la~~~~giD~IiggH~H~~~ 219 (281)
T cd07409 163 KFLDEIEAAQKEADKLKAQGVNKIIALSHSGYEV--------D----K---EIARKVPGVDVIVGGHSHTFL 219 (281)
T ss_pred EECCHHHHHHHHHHHHHhcCCCEEEEEeccCchh--------H----H---HHHHcCCCCcEEEeCCcCccc
Confidence 0123344566655554333466789999976421 1 1 22222 479999999999864
No 69
>cd07407 MPP_YHR202W_N Saccharomyces cerevisiae YHR202W and related proteins, N-terminal metallophosphatase domain. YHR202W is an uncharacterized Saccharomyces cerevisiae UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at
Probab=98.17 E-value=0.00013 Score=72.30 Aligned_cols=204 Identities=15% Similarity=0.183 Sum_probs=101.5
Q ss_pred CcEEEEEecCCCCCC--------------hHHHHHHHHH----cCCC-EEEEcCccccccccccCCCccccccccCCCCc
Q 039280 172 PNRIAVVGDLGLTYN--------------TTTTVAHLMS----NHPD-LLLLIGDLSYADLYLTNGTKSSCYLCQSIESP 232 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~--------------~~~~l~~l~~----~~pd-fvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~ 232 (487)
.++|+..+|+|.... ..+.++++.+ .+++ ++|.+||+.....+
T Consensus 5 ~ltILhtnD~Hg~l~~~~~~~~~~~~~gg~a~~i~~~~~~~~~~~~~~Llld~GD~~qGs~~------------------ 66 (282)
T cd07407 5 DINFLHTTDTHGWLGGHLNDPNYSADWGDFASFVEHMREKADQKGVDLLLVDTGDLHDGNGL------------------ 66 (282)
T ss_pred eEEEEEEcccccCCcCcCCcccccCCHHHHHHHHHHHHHHHHhcCCCEEEEeCCCccCCeec------------------
Confidence 589999999997521 1223344332 3555 66789999853211
Q ss_pred ccchhhHHHHHHHHhhhccccCCCEEEecCCcccccCccc-hhhHHhhcccCCCC---C-----CC-C--CCCcceEEEE
Q 039280 233 IQETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAEN-QTFAAYSSRFAFPS---E-----ES-G--SSSSLYYSFN 300 (487)
Q Consensus 233 ~~~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~-~~~~~y~~~f~~P~---~-----~~-~--~~~~~yYsf~ 300 (487)
...+...+....+.|..+.- =.+++||||+...... ..+..+.....+|- | +. . .....|.-++
T Consensus 67 -~~~~~~~g~~~~~~mN~mgy---Da~tlGNHEFd~g~~~l~~l~~~~~~~~fp~l~aNi~~~~~~~~~~~~~~~y~i~~ 142 (282)
T cd07407 67 -SDASPPPGSYSNPIFRMMPY---DLLTIGNHELYNYEVADDEYEGFVPSWGDRYLTSNVDITDDSGLLVPIGSRYRKFT 142 (282)
T ss_pred -eeeecCCChHHHHHHHhcCC---cEEeecccccCccccHHHHHHHHHhhcCCCEEEEEEEEeCCCCcccccccceEEEE
Confidence 00110112223344444321 2578999999632111 11122222222221 0 00 0 1112355667
Q ss_pred eC-CEE--EEEEcCccc-------CCC--ChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHH
Q 039280 301 AG-GIH--FVMLSAYID-------YDK--SSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMED 368 (487)
Q Consensus 301 ~g-~v~--fi~Ldt~~~-------~~~--~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~ 368 (487)
.+ +++ +|.|-+... +.. ...+.+|+.+.|++ ....-+|+++|....... + ..+....
T Consensus 143 ~~~G~kIgiiGltt~~~~~~~~~~f~d~~~~~~~~~v~~~l~~---~~~DvIIvlsH~G~~~d~-----~---~~~~~~~ 211 (282)
T cd07407 143 TKHGLRVLAFGFLFDFKGAANGVTVQPVADVVQEPWFQDAINN---EDVDLILVLGHMPVRDDA-----E---FKVLHDA 211 (282)
T ss_pred cCCCcEEEEEEEecccccCCCCcEEcCHHHHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCc-----c---HHHHHHH
Confidence 76 655 455543211 001 12223488877874 245669999998764321 1 1111223
Q ss_pred HHHHc-CCc-EEEeCccccceecccccCCccCCCCcEEEEeCCccccCC
Q 039280 369 LLYYY-GVD-IVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGNVEG 415 (487)
Q Consensus 369 l~~~~-~Vd-lvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~~~~ 415 (487)
+.++. ++| ++|.||+|..... ++ .+|+..+-.|.-|..-+
T Consensus 212 la~~~~~id~~Ii~GHsH~~~~~-~~------~~~~~ivq~G~~g~~lg 253 (282)
T cd07407 212 IRKIFPDTPIQFLGGHSHVRDFT-QY------DSSSTGLESGRYLETVG 253 (282)
T ss_pred HHHhCCCCCEEEEeCCcccccce-ec------cCcEEEEeccchhhceE
Confidence 33444 577 7999999975332 11 24666666777666443
No 70
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=98.11 E-value=8.1e-05 Score=87.53 Aligned_cols=184 Identities=18% Similarity=0.223 Sum_probs=92.7
Q ss_pred CCcEEEEEecCCCCCC-h---HHHHHHHHHcCCCEEEE-cCccccccccccCCCccccccccCCCCcccchhhHHHHHHH
Q 039280 171 YPNRIAVVGDLGLTYN-T---TTTVAHLMSNHPDLLLL-IGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWG 245 (487)
Q Consensus 171 ~~~~f~v~gD~~~~~~-~---~~~l~~l~~~~pdfvl~-~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~ 245 (487)
..++|++++|+|.... . ...++++.+.+|+.+++ +||++...... . ...+....
T Consensus 659 ~~l~Il~~nD~Hg~l~g~~r~~~~i~~~r~~~~~~l~ld~GD~~~gs~~~-------------------~--~~~g~~~~ 717 (1163)
T PRK09419 659 WELTILHTNDFHGHLDGAAKRVTKIKEVKEENPNTILVDAGDVYQGSLYS-------------------N--LLKGLPVL 717 (1163)
T ss_pred eEEEEEEEeecccCCCCHHHHHHHHHHHHhhCCCeEEEecCCCCCCcchh-------------------h--hcCChHHH
Confidence 4699999999996542 2 23456666678887765 99998432100 0 00112223
Q ss_pred HhhhccccCCCEEEecCCcccccCccchhhHHhhcccC------------CCC---C----CCCC---CCcceEEEEeCC
Q 039280 246 RYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFA------------FPS---E----ESGS---SSSLYYSFNAGG 303 (487)
Q Consensus 246 ~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~------------~P~---~----~~~~---~~~~yYsf~~g~ 303 (487)
+.|..+ -.-++++||||+.... ..+..+..... +|- | ..+. ....|.-++.++
T Consensus 718 ~~ln~l---g~d~~~~GNHEfd~g~--~~l~~~l~~~~~~~~~~~~~~~~fp~l~aNv~~~~~~~~~~~~~py~I~e~~G 792 (1163)
T PRK09419 718 KMMKEM---GYDASTFGNHEFDWGP--DVLPDWLKGGGDPKNRHQFEKPDFPFVASNIYVKKTGKLVSWAKPYILVEVNG 792 (1163)
T ss_pred HHHhCc---CCCEEEecccccccCh--HHHHHHHHhcccccccccccCCCCCEEEEEEEeCCCCccccccCCEEEEEECC
Confidence 333333 1235699999986432 22222222211 111 0 0011 112456678887
Q ss_pred EE--EEEEcCcc-cC-C--------CChHHHHHHHHHhcccC-CCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHH
Q 039280 304 IH--FVMLSAYI-DY-D--------KSSDQYKWLESDLGDVD-REVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLL 370 (487)
Q Consensus 304 v~--fi~Ldt~~-~~-~--------~~~~Q~~WL~~~L~~~~-r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~ 370 (487)
++ ||.+-+.. .. . .-.+..+.+++.+++.. ......+|++.|......... .+ ....+|.
T Consensus 793 ~kIgiiGltt~~~~~~~~p~~~~~l~f~d~~e~~~~~v~~Lr~~~~~D~VV~LsH~G~~~d~~~--~~-----~~~~~lA 865 (1163)
T PRK09419 793 KKVGFIGLTTPETAYKTSPGNVKNLEFKDPAEAAKKWVKELKEKEKVDAIIALTHLGSNQDRTT--GE-----ITGLELA 865 (1163)
T ss_pred EEEEEEEecccccccccCCCCcCCcEEcCHHHHHHHHHHHHHhhcCCCEEEEEecCCccccccc--cc-----cHHHHHH
Confidence 55 45554321 00 0 01122233333333322 135667999999886532111 01 1122344
Q ss_pred HHc-CCcEEEeCccccce
Q 039280 371 YYY-GVDIVFNGHVHAYE 387 (487)
Q Consensus 371 ~~~-~VdlvlsGH~H~ye 387 (487)
++. +||++|.||+|...
T Consensus 866 ~~v~gIDvIigGHsH~~~ 883 (1163)
T PRK09419 866 KKVKGVDAIISAHTHTLV 883 (1163)
T ss_pred HhCCCCCEEEeCCCCccc
Confidence 433 79999999999754
No 71
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=98.08 E-value=4.6e-06 Score=78.82 Aligned_cols=37 Identities=30% Similarity=0.327 Sum_probs=24.7
Q ss_pred EEEEEecCCCCCCh-HHHHHHHHH-cCCCEEEEcCcccc
Q 039280 174 RIAVVGDLGLTYNT-TTTVAHLMS-NHPDLLLLIGDLSY 210 (487)
Q Consensus 174 ~f~v~gD~~~~~~~-~~~l~~l~~-~~pdfvl~~GDl~y 210 (487)
|++++||+|..... .+.++.+.. .++|.++++||+++
T Consensus 2 ri~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~ 40 (207)
T cd07424 2 RDFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLID 40 (207)
T ss_pred CEEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCccc
Confidence 68999999965321 122222221 25899999999995
No 72
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=98.07 E-value=0.0002 Score=69.85 Aligned_cols=194 Identities=15% Similarity=0.139 Sum_probs=102.0
Q ss_pred cEEEEEecCCCCCCh---HHHHHHHHH-cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhh
Q 039280 173 NRIAVVGDLGLTYNT---TTTVAHLMS-NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYM 248 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~---~~~l~~l~~-~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~ 248 (487)
+||+++||+=..... ...+.++.+ .++||++..||.+-. +. |-. +.. .+.+
T Consensus 1 m~ilfiGDi~G~~Gr~~l~~~L~~lk~~~~~D~vIaNgEn~~g-G~---Gi~-----------------~~~----~~~L 55 (266)
T TIGR00282 1 IKFLFIGDVYGKAGRKIVKNNLPQLKSKYQADLVIANGENTTH-GK---GLT-----------------LKI----YEFL 55 (266)
T ss_pred CeEEEEEecCCHHHHHHHHHHHHHHHHhCCCCEEEEcCcccCC-CC---CCC-----------------HHH----HHHH
Confidence 589999999644322 233455554 478999999999842 11 110 111 2222
Q ss_pred hccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCC-CCCCcceEEEEeCCEEEEEEcC--cccCCC--ChHHHH
Q 039280 249 QPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEES-GSSSSLYYSFNAGGIHFVMLSA--YIDYDK--SSDQYK 323 (487)
Q Consensus 249 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~-~~~~~~yYsf~~g~v~fi~Ldt--~~~~~~--~~~Q~~ 323 (487)
.. ..+-++ +.|||+++...--...... .+.-.|.+-+ ...+..|..++.++..+-+++- ...... ...-++
T Consensus 56 ~~--~GvDvi-T~GNH~~Dkge~~~~i~~~-~~~lrpanyp~~~pG~g~~i~~~nG~kiaVinl~G~~fm~~~~~~~Pf~ 131 (266)
T TIGR00282 56 KQ--SGVNYI-TMGNHTWFQKLILDVVINQ-KDLVRPLNFDTSFAGKGSLVFEFNGAKIAVTNLQGTSVNLPFKTTNPFK 131 (266)
T ss_pred Hh--cCCCEE-EccchhccCcHHHHHHhcc-ccccccCCCCCCCCCCCcEEEEECCEEEEEEECCCcccCCccccCCHHH
Confidence 22 244444 4499999743110011111 1111122211 1223446667888876655553 211111 122233
Q ss_pred HHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCccCCCCcE
Q 039280 324 WLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGPV 403 (487)
Q Consensus 324 WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~v 403 (487)
-+++.+++.+. +++.+||.+|.-.- .. +.....+-+.+|++|+.-|+|...--.. +=|.|+-
T Consensus 132 ~~d~~i~~lk~-~~d~IIVd~Haeat-----------sE-K~a~~~~ldg~vsaVvGtHtHV~TaD~~-----il~~gta 193 (266)
T TIGR00282 132 VLKELINMLKK-DCDLIFVDFHAETT-----------SE-KNAFGMAFDGYVTAVVGTHTHVPTADLR-----ILPKGTA 193 (266)
T ss_pred HHHHHHHhhhc-CCCEEEEEeCCCCH-----------HH-HHHHHHHhCCCccEEEeCCCCCCCCcce-----eCCCCCE
Confidence 34444444322 35679999995421 11 3334666778999999999997533322 2368999
Q ss_pred EEEe-CCcccc
Q 039280 404 YILV-GDGGNV 413 (487)
Q Consensus 404 yIv~-G~gG~~ 413 (487)
||+- |.-|..
T Consensus 194 yitD~Gm~G~~ 204 (266)
T TIGR00282 194 YITDVGMTGPF 204 (266)
T ss_pred EEecCCcccCc
Confidence 9873 555554
No 73
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=98.05 E-value=3.8e-05 Score=74.44 Aligned_cols=198 Identities=19% Similarity=0.196 Sum_probs=96.1
Q ss_pred EEEecCCCCCCh--H----HHHHHHHHc-----CCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHH
Q 039280 176 AVVGDLGLTYNT--T----TTVAHLMSN-----HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYW 244 (487)
Q Consensus 176 ~v~gD~~~~~~~--~----~~l~~l~~~-----~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~ 244 (487)
++++|+|.+... . ..++.+... ++|.|+++||++...... .+... ..........+..+
T Consensus 2 ~~iSDlHl~~~~~~~~~~~~l~~~l~~~~~~~~~~d~lvi~GDl~d~~~~~-~~~~~---------~~~~~~~~~~~~~~ 71 (243)
T cd07386 2 VFISDVHVGSKTFLEDAFEKFVRWLNGEDDSASRVKYLIIAGDLVDGIGVY-PGQEE---------ELEILDIYEQYEEA 71 (243)
T ss_pred EEecccCCCchhhhHHHHHHHHHHHcCCcccccCccEEEEeCCcccccccC-Ccchh---------hhhhhhHHHHHHHH
Confidence 579999976432 1 222333332 469999999999531000 00000 00000011234556
Q ss_pred HHhhhccccCCCEEEecCCcccccCcc--chhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcc--c---C--
Q 039280 245 GRYMQPLVSNVPTMVIEGEHEIERQAE--NQTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYI--D---Y-- 315 (487)
Q Consensus 245 ~~~~~~l~~~~P~~~v~GNHD~~~~~~--~~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~--~---~-- 315 (487)
.+.++.+...+|+++++||||.....- ......+...+. +.+ ..-..+. +.+.+++.+|++..... + +
T Consensus 72 ~~~l~~L~~~~~v~~ipGNHD~~~~~~pq~~l~~~l~~~~~-~~~-v~~l~Np-~~~~~~g~~i~~~~G~~~~d~~~~~~ 148 (243)
T cd07386 72 AEYLSDVPSHIKIIIIPGNHDAVRQAEPQPALPEEIRKLFL-PGN-VEFVSNP-ALVKIHGVDVLIYHGRSIDDVVKLIP 148 (243)
T ss_pred HHHHHhcccCCeEEEeCCCCCcccccCCCCCccHHHHhhcC-CCc-eEEeCCC-CEEEECCEEEEEECCCCHHHHHHhCC
Confidence 667777777899999999999853210 011122222221 100 0001122 25778888887653211 0 0
Q ss_pred -CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccC
Q 039280 316 -DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYN 394 (487)
Q Consensus 316 -~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~ 394 (487)
.....-.++|+..|.... -.|.. -.-.|.+... .. .+..+...+++|+||.|.+....
T Consensus 149 ~~~~~~~~~~~~~~l~~~h--l~P~~--~~~~~~~~~~-~~------------~~~~~~~p~vii~Gh~h~~~~~~---- 207 (243)
T cd07386 149 GLSYDKPGKAMEELLKRRH--LAPIY--GGRTPIAPEP-ED------------YLVIDEVPDILHTGHVHVYGVGV---- 207 (243)
T ss_pred CCCcccHHHHHHHHHhhcc--cCCCC--CCCEeeCCCC-CC------------CEEecCCCCEEEECCCCchHhEE----
Confidence 112333566666666521 11100 0001111100 00 01112357899999999976652
Q ss_pred CccCCCCcEEEEeCCcc
Q 039280 395 YSLDPCGPVYILVGDGG 411 (487)
Q Consensus 395 ~~~~~~g~vyIv~G~gG 411 (487)
-.|+.+|..|+.-
T Consensus 208 ----~~~~~~vn~Gsf~ 220 (243)
T cd07386 208 ----YRGVLLVNSGTWQ 220 (243)
T ss_pred ----ECCEEEEECCCCc
Confidence 2478888888754
No 74
>KOG3662 consensus Cell division control protein/predicted DNA repair exonuclease [Replication, recombination and repair]
Probab=98.04 E-value=4.5e-05 Score=77.61 Aligned_cols=116 Identities=22% Similarity=0.355 Sum_probs=70.2
Q ss_pred CCcEEEEEecCCCCCChH------------------HHHHHHH-HcCCCEEEEcCccccccccccCCCccccccccCCCC
Q 039280 171 YPNRIAVVGDLGLTYNTT------------------TTVAHLM-SNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIES 231 (487)
Q Consensus 171 ~~~~f~v~gD~~~~~~~~------------------~~l~~l~-~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~ 231 (487)
.++|++.++|.|.-.+.. +.+..+. ..+||.++++||+... |...
T Consensus 47 n~~ki~~vaDPQilg~~~~~~~~~~Ldk~~~D~~lrr~f~~~~~~lkPdvvffLGDLfDe------G~~~---------- 110 (410)
T KOG3662|consen 47 NSTKILLVADPQILGNWPKKFLVSWLDKYGNDWYLRRSFDMSQWRLKPDVVFFLGDLFDE------GQWA---------- 110 (410)
T ss_pred CceEEEEecCchhcCCCCCccccchHHhhhhHHHHHHHHHHHHhccCCCEEEEecccccc------CccC----------
Confidence 378999999998764211 1111111 2599999999999953 3211
Q ss_pred cccchhhHHHHHHHHhhhccccCCCEEEecCCcccccCccc--hhhHHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEE
Q 039280 232 PIQETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAEN--QTFAAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVML 309 (487)
Q Consensus 232 ~~~~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~--~~~~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~L 309 (487)
..+.|++..+.|.+.... ...+|.+.++||||++..... .....|...| ++...+|++|++.|+++
T Consensus 111 -~~eEf~~~~~RfkkIf~~-k~~~~~~~i~GNhDIGf~~~~~~~~i~Rfe~~f----------g~~~r~f~v~~~tf~~~ 178 (410)
T KOG3662|consen 111 -GDEEFKKRYERFKKIFGR-KGNIKVIYIAGNHDIGFGNELIPEWIDRFESVF----------GPTERRFDVGNLTFVMF 178 (410)
T ss_pred -ChHHHHHHHHHHHHhhCC-CCCCeeEEeCCccccccccccchhHHHHHHHhh----------cchhhhhccCCceeEEe
Confidence 112333333334433322 358999999999999743211 1113343334 22456799999999999
Q ss_pred cCccc
Q 039280 310 SAYID 314 (487)
Q Consensus 310 dt~~~ 314 (487)
|++..
T Consensus 179 d~~~l 183 (410)
T KOG3662|consen 179 DSNAL 183 (410)
T ss_pred eehhh
Confidence 98753
No 75
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=97.98 E-value=1.3e-05 Score=75.79 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCcEEEeCccccceec
Q 039280 365 EMEDLLYYYGVDIVFNGHVHAYERS 389 (487)
Q Consensus 365 ~l~~l~~~~~VdlvlsGH~H~yeR~ 389 (487)
.+..+|+.++.++++.||+|.....
T Consensus 158 ~~~~~l~~~~~~~iv~GHTh~~~~~ 182 (208)
T cd07425 158 HLDKVLERLGAKRMVVGHTPQEGGI 182 (208)
T ss_pred HHHHHHHHcCCCeEEEcCeeeecCc
Confidence 5778889999999999999975443
No 76
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=1.9e-05 Score=76.93 Aligned_cols=73 Identities=22% Similarity=0.349 Sum_probs=46.8
Q ss_pred cEEEEEecCCCCCCh-------------HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhH
Q 039280 173 NRIAVVGDLGLTYNT-------------TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQP 239 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~-------------~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~ 239 (487)
|||++++|+|.+... ...++.+.+.++|+||++||+.... .. .. .
T Consensus 1 mkilh~SD~Hlg~~~~~~~~~~~~~~~l~~l~~~~~~~~~D~lli~GDi~d~~------~p--------------~~--~ 58 (253)
T TIGR00619 1 MRILHTSDWHLGKTLEGVSRLAEQKAFLDDLLEFAKAEQIDALLVAGDVFDTA------NP--------------PA--E 58 (253)
T ss_pred CEEEEEhhhcCCCccCCCChHHHHHHHHHHHHHHHHHcCCCEEEECCccCCCC------CC--------------CH--H
Confidence 689999999987431 1233444567899999999999531 10 00 1
Q ss_pred HHHHHHHhhhccc-cC-CCEEEecCCcccc
Q 039280 240 RWDYWGRYMQPLV-SN-VPTMVIEGEHEIE 267 (487)
Q Consensus 240 ~w~~~~~~~~~l~-~~-~P~~~v~GNHD~~ 267 (487)
....+.+.++.+. .. +|+++++||||..
T Consensus 59 ~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~ 88 (253)
T TIGR00619 59 AQELFNAFFRNLSDANPIPIVVISGNHDSA 88 (253)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEccCCCCh
Confidence 1222344444442 23 8999999999985
No 77
>cd07405 MPP_UshA_N Escherichia coli UshA and related proteins, N-terminal metallophosphatase domain. UshA is a bacterial periplasmic enzyme with UDP-sugar hydrolase and dinucleoside-polyphosphate hydrolase activities associated with its N-terminal metallophosphatase domain, and 5'-nucleotidase activity associated with its C-terminal domain. UshA has been studied in Escherichia coli where it is expressed from the ushA gene as an immature precursor and proteolytically cleaved to form a mature product upon export to the periplasm. UshA hydrolyzes many different nucleotides and nucleotide derivitives and has been shown to degrade external UDP-glucose to uridine, glucose 1-phosphate and phosphate for utilization by the cell. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs
Probab=97.92 E-value=0.00018 Score=71.50 Aligned_cols=50 Identities=26% Similarity=0.199 Sum_probs=28.2
Q ss_pred CCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccce
Q 039280 336 VTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYE 387 (487)
Q Consensus 336 ~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~ye 387 (487)
+..-+|+++|-......... ........+.+.+...++|++|.||+|...
T Consensus 173 ~~D~VI~lsH~G~~~~~~~~--~~~~~~~~lA~~~~~~giD~IigGHsH~~~ 222 (285)
T cd07405 173 KPDIVIAATHMGHYDNGEHG--SNAPGDVEMARALPAGGLDLIVGGHSQDPV 222 (285)
T ss_pred CCCEEEEEecccccCCcccc--ccCchHHHHHHhcCCCCCCEEEeCCCCccc
Confidence 45669999998875321100 000001122222223589999999999865
No 78
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=97.91 E-value=8.5e-06 Score=77.63 Aligned_cols=37 Identities=30% Similarity=0.435 Sum_probs=26.6
Q ss_pred EEEEEecCCCCCCh-HHHHHHHHHc-CCCEEEEcCcccc
Q 039280 174 RIAVVGDLGLTYNT-TTTVAHLMSN-HPDLLLLIGDLSY 210 (487)
Q Consensus 174 ~f~v~gD~~~~~~~-~~~l~~l~~~-~pdfvl~~GDl~y 210 (487)
|++++||+|..... .+.++++... +.|-++++||++.
T Consensus 18 ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvD 56 (218)
T PRK11439 18 HIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLID 56 (218)
T ss_pred eEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccC
Confidence 89999999987432 2344444322 5789999999995
No 79
>cd07390 MPP_AQ1575 Aquifex aeolicus AQ1575 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to AQ1575, an uncharacterized Aquifex aeolicus protein. AQ1575 may play an accessory role in DNA repair, based on the close proximity of its gene to Holliday junction resolvasome genes. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a d
Probab=97.85 E-value=3.1e-05 Score=70.59 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=14.2
Q ss_pred cCCcEEEeCccccceec
Q 039280 373 YGVDIVFNGHVHAYERS 389 (487)
Q Consensus 373 ~~VdlvlsGH~H~yeR~ 389 (487)
.+.|++++||+|.....
T Consensus 124 ~~~d~vi~GHtH~~~~~ 140 (168)
T cd07390 124 DRGSWNLHGHIHSNSPD 140 (168)
T ss_pred CCCeEEEEeeeCCCCCC
Confidence 46799999999987666
No 80
>COG0737 UshA 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases [Nucleotide transport and metabolism]
Probab=97.84 E-value=0.00053 Score=73.96 Aligned_cols=211 Identities=18% Similarity=0.151 Sum_probs=107.4
Q ss_pred CCcEEEEEecCCCCCC------------h----HHHHHHHHHc-CCCEEEEcCccccccccccCCCccccccccCCCCcc
Q 039280 171 YPNRIAVVGDLGLTYN------------T----TTTVAHLMSN-HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPI 233 (487)
Q Consensus 171 ~~~~f~v~gD~~~~~~------------~----~~~l~~l~~~-~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~ 233 (487)
..++|+...|+|.... . ...++++.+. +..++|.+||+...+...+.
T Consensus 25 ~~l~ilhtnD~H~~l~~~~~~~~~~~~~g~~~~~~~v~~~ra~~~~~llld~GD~~~G~~l~~~---------------- 88 (517)
T COG0737 25 VKLTILHTNDLHGHLEPYDYDDDGDTDGGLARIATLVKQLRAENKNVLLLDAGDLIQGSPLSDY---------------- 88 (517)
T ss_pred eeEEEEEeccccccceeccccccCcccccHHHHHHHHHHHHhhcCCeEEEeCCcccCCcccccc----------------
Confidence 4789999999998643 1 1223444444 34678999999954211111
Q ss_pred cchhhHHHHHHHHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCC---C---C---CCCCCcceEEEEeCCE
Q 039280 234 QETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPS---E---E---SGSSSSLYYSFNAGGI 304 (487)
Q Consensus 234 ~~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~---~---~~~~~~~yYsf~~g~v 304 (487)
........+.|..+. .=..++||||+... .+.+..+.....+|- | . ....-+.|.-++.+++
T Consensus 89 ----~~~g~~~~~~mN~m~---yDa~tiGNHEFd~g--~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~Py~I~~~~g~ 159 (517)
T COG0737 89 ----LTKGEPTVDLLNALG---YDAMTLGNHEFDYG--LEALARLLDEAKFPVLSANVYDKNSTGPPFFKPYAIKEVGGV 159 (517)
T ss_pred ----ccCCChHHHHHhhcC---CcEEeecccccccC--HHHHHHHHhccCCceEEeeeEecCCCCccCcCCeEEEecCCe
Confidence 011111223333332 22678999999643 233444444444441 0 1 0122356778888875
Q ss_pred E--EEEEcCcc--cC---C-----CChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHH
Q 039280 305 H--FVMLSAYI--DY---D-----KSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYY 372 (487)
Q Consensus 305 ~--fi~Ldt~~--~~---~-----~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~ 372 (487)
+ +|.+.+.. .+ + .-.+..+++++.+.+...+...-+|+++|.+......-.. ......... .
T Consensus 160 KIgiIG~~~~~~~~~~~~~~~~~~~f~d~~e~~~~~i~elk~~~vD~iI~LsH~G~~~d~~~~~-~~~~~~~~~----~- 233 (517)
T COG0737 160 KIGIIGLTTPTIPTWEKPNAIEGVTFRDPIEAAKKYIPELKGEGVDVIIALSHLGIEDDLELAS-EVPGDVDVA----V- 233 (517)
T ss_pred EEEEEEecCCcccccccccccCCcEEcCHHHHHHHHHHHHHhcCCCEEEEEeccCcCccccccc-ccccccccc----c-
Confidence 4 55555311 11 1 1124455666655554333356699999988764322110 000000000 1
Q ss_pred cCCcEEEeCccccceecccccCCccCCCCcEEEEeCCccccCC
Q 039280 373 YGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGNVEG 415 (487)
Q Consensus 373 ~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~~~~ 415 (487)
.++|+++.||.|.+--... .....+++..+-.|..|..-+
T Consensus 234 ~~iD~i~~GH~H~~~~~~~---~~~~~~~t~ivqag~~gk~vG 273 (517)
T COG0737 234 PGIDLIIGGHSHTVFPGGD---KPGTVNGTPIVQAGEYGKYVG 273 (517)
T ss_pred cCcceEeccCCcccccCCc---ccCccCCEEEEccChhhCcee
Confidence 4499999999996421100 011124556666666665433
No 81
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=97.83 E-value=5.3e-05 Score=78.85 Aligned_cols=73 Identities=21% Similarity=0.374 Sum_probs=45.7
Q ss_pred cEEEEEecCCCCCCh-------------HHHHHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhH
Q 039280 173 NRIAVVGDLGLTYNT-------------TTTVAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQP 239 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~-------------~~~l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~ 239 (487)
|||++++|+|.+... ...++.+.+.+||+||++||+... +.. ..+
T Consensus 1 mkilh~SDlHlG~~~~~~~~~~~~~~~l~~l~~~i~~~~~D~viIaGDifD~------~~p--------------~~~-- 58 (407)
T PRK10966 1 MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLEQVQEHQVDAIIVAGDIFDT------GSP--------------PSY-- 58 (407)
T ss_pred CEEEEEcccCCCCcccCcccHHHHHHHHHHHHHHHHhcCCCEEEECCccccC------CCC--------------cHH--
Confidence 689999999987321 123344456799999999999842 110 001
Q ss_pred HHHHHHHhhhccc-cCCCEEEecCCcccc
Q 039280 240 RWDYWGRYMQPLV-SNVPTMVIEGEHEIE 267 (487)
Q Consensus 240 ~w~~~~~~~~~l~-~~~P~~~v~GNHD~~ 267 (487)
....+.+++..+. ..+|+++++||||..
T Consensus 59 a~~~~~~~l~~L~~~~~~v~~I~GNHD~~ 87 (407)
T PRK10966 59 ARELYNRFVVNLQQTGCQLVVLAGNHDSV 87 (407)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEcCCCCCh
Confidence 1122223333332 368999999999975
No 82
>PHA02546 47 endonuclease subunit; Provisional
Probab=97.77 E-value=6.4e-05 Score=76.55 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=45.6
Q ss_pred cEEEEEecCCCCCCh---------HHH----HHHHHHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhH
Q 039280 173 NRIAVVGDLGLTYNT---------TTT----VAHLMSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQP 239 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~---------~~~----l~~l~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~ 239 (487)
|||+++||+|.+... ... ++.+.+.+||+||++||+.... ... . ..
T Consensus 1 MKilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~~~vD~VliaGDlfD~~----~~~-------------~----~~ 59 (340)
T PHA02546 1 MKILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKAHGITTWIQLGDTFDVR----KAI-------------T----QN 59 (340)
T ss_pred CeEEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHHcCCCEEEECCcccCCC----CCC-------------C----HH
Confidence 699999999987431 123 3334567999999999998421 000 0 01
Q ss_pred HHHHHHH-hhhcc-ccCCCEEEecCCcccc
Q 039280 240 RWDYWGR-YMQPL-VSNVPTMVIEGEHEIE 267 (487)
Q Consensus 240 ~w~~~~~-~~~~l-~~~~P~~~v~GNHD~~ 267 (487)
......+ +++.+ ...+|+++++||||..
T Consensus 60 ~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~ 89 (340)
T PHA02546 60 TMNFVREKIFDLLKEAGITLHVLVGNHDMY 89 (340)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEccCCCcc
Confidence 1111112 23333 2479999999999974
No 83
>cd07380 MPP_CWF19_N Schizosaccharomyces pombe CWF19 and related proteins, N-terminal metallophosphatase domain. CWF19 cell cycle control protein (also known as CWF19-like 1 (CWF19L1) in Homo sapiens), N-terminal metallophosphatase domain. CWF19 contains C-terminal domains similar to that found in the CwfJ cell cycle control protein. The metallophosphatase domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site
Probab=97.72 E-value=0.00015 Score=64.74 Aligned_cols=54 Identities=17% Similarity=-0.033 Sum_probs=33.9
Q ss_pred EEEEcCCCccccCCCC-cc----hhHHHHHHHHHHHHHcCCcEEEeCccc-cceecccccC
Q 039280 340 LIAAWHPPWYSTYSAH-YR----EVECMRVEMEDLLYYYGVDIVFNGHVH-AYERSNRVYN 394 (487)
Q Consensus 340 ~Iv~~H~P~y~~~~~~-~~----~~~~~r~~l~~l~~~~~VdlvlsGH~H-~yeR~~p~~~ 394 (487)
-|+++|.|++...... .. ....-...+.+++++.+....||||.| -|||- |..+
T Consensus 71 DILlTh~wP~gi~~~~~~~~~~~~~~~GS~~i~~l~~~lkPrYhf~gh~~~fyer~-Pf~~ 130 (150)
T cd07380 71 DILLTSEWPKGISKLSKVPFEETLLICGSDLIAELAKKLKPRYHFAGLEGVFYERE-PYRN 130 (150)
T ss_pred CEEECCCCchhhhhhCCCcccccccCCCCHHHHHHHHHcCCCeEeecCCCceEeec-CccC
Confidence 4777888776542110 00 001113566778889999999999999 66665 6544
No 84
>cd08162 MPP_PhoA_N Synechococcus sp. strain PCC 7942 PhoA and related proteins, N-terminal metallophosphatase domain. Synechococcus sp. strain PCC 7942 PhoA is a large atypical alkaline phosphatase. It is known to be transported across the inner cytoplasmic membrane and into the periplasmic space. In vivo inactivation of the gene encoding PhoA leads to a loss of extracellular, phosphate-regulated phosphatase activity, but does not appear to affect the cells capacity for phosphate uptake. PhoA may play a role in scavenging phosphate during growth of Synechococcus sp. strain PCC 7942 in its natural environment. PhoA belongs to a domain family which includes the bacterial enzyme UshA and several other related enzymes including SoxB, CpdB, YhcR, and CD73. All members have a similar domain architecture which includes an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly relat
Probab=97.69 E-value=0.001 Score=66.86 Aligned_cols=38 Identities=18% Similarity=0.039 Sum_probs=24.7
Q ss_pred cEEEEEecCCCCCC----h---HHHHHHHHHc----CC-CEEEEcCcccc
Q 039280 173 NRIAVVGDLGLTYN----T---TTTVAHLMSN----HP-DLLLLIGDLSY 210 (487)
Q Consensus 173 ~~f~v~gD~~~~~~----~---~~~l~~l~~~----~p-dfvl~~GDl~y 210 (487)
++|+...|+|.... . ...++++.+. .+ -++|.+||+..
T Consensus 1 l~IlhtnD~Hg~~~~~gg~ar~a~~i~~~r~~~~~~~~~~l~ldaGD~~q 50 (313)
T cd08162 1 LQLLHTSDGESGLLAEDDAPNFSALVNALKDEAAAEYDNTLTLSSGDNFI 50 (313)
T ss_pred CeEEEecccccCccccCCHHHHHHHHHHHHHhhhccCCCeEEEecCcccc
Confidence 47899999997632 1 1235555432 33 48899999984
No 85
>TIGR01530 nadN NAD pyrophosphatase/5'-nucleotidase NadN. This model describes NadN of Haemophilus influenzae and a small number of close homologs in pathogenic, Gram-negative bacteria. NadN is a periplasmic enzyme that cleaves NAD (nicotinamide adenine dinucleotide) to NMN (nicotinamide mononucleotide) and AMP. The NMN must be converted by a 5'-nucleotidase to nicotinamide riboside for import. NadN belongs a large family of 5'-nucleotidases and has NMN 5'-nucleotidase activity for NMN, AMP, etc.
Probab=97.67 E-value=0.00068 Score=73.53 Aligned_cols=110 Identities=14% Similarity=0.178 Sum_probs=57.3
Q ss_pred EEecCCcccccCccchhhHHhhcccCCCCCC------CC----CCCcceEEEEeCC--EEEEEEcCccc-C---CC----
Q 039280 258 MVIEGEHEIERQAENQTFAAYSSRFAFPSEE------SG----SSSSLYYSFNAGG--IHFVMLSAYID-Y---DK---- 317 (487)
Q Consensus 258 ~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~------~~----~~~~~yYsf~~g~--v~fi~Ldt~~~-~---~~---- 317 (487)
++++||||+... ...+..+.....+|--. .. ..-..|.-++.++ |-||.|.+... . ..
T Consensus 85 a~~lGNHEFd~G--~~~l~~~~~~~~fp~l~aNv~~~~~~~~~~~~~p~~i~~~~g~kIgiiGl~~~~~~~~~~~~~~~~ 162 (550)
T TIGR01530 85 FFTLGNHEFDAG--NEGLKEFLEPLEIPVLSANVIPDAASILHGKWKPSAIFERAGEKIAIIGLDTVKKTVESSSPGKDI 162 (550)
T ss_pred EEEeccccccCC--HHHHHHHHHhCCCCEEEEeeecCCCcccccCcCceEEEEECCeEEEEEEeecCcccccccCCCCce
Confidence 678999999642 23344443333333210 00 1123466678887 55677754211 0 00
Q ss_pred ---C-hHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHH-cCCcEEEeCccccce
Q 039280 318 ---S-SDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYY-YGVDIVFNGHVHAYE 387 (487)
Q Consensus 318 ---~-~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~-~~VdlvlsGH~H~ye 387 (487)
. -+-.+-..+.|++ ....-+|++.|..... .. .|.++ -+||++|.||+|..-
T Consensus 163 ~f~d~~~~~~~~v~~Lk~---~g~D~II~lsH~g~~~--------d~-------~la~~~~~iD~IigGHsH~~~ 219 (550)
T TIGR01530 163 KFIDEIAAAQIAANALKQ---QGINKIILLSHAGFEK--------NC-------EIAQKINDIDVIVSGDSHYLL 219 (550)
T ss_pred EECCHHHHHHHHHHHHHh---CCCCEEEEEecCCcHH--------HH-------HHHhcCCCCCEEEeCCCCccc
Confidence 0 0112222234443 3456699999965321 11 23333 279999999999864
No 86
>PRK09558 ushA bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed
Probab=97.58 E-value=0.00084 Score=72.96 Aligned_cols=184 Identities=18% Similarity=0.163 Sum_probs=89.3
Q ss_pred CCcEEEEEecCCCCCC--------hH---HHHHHHHHc----CC-CEEEEcCccccccccccCCCccccccccCCCCccc
Q 039280 171 YPNRIAVVGDLGLTYN--------TT---TTVAHLMSN----HP-DLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQ 234 (487)
Q Consensus 171 ~~~~f~v~gD~~~~~~--------~~---~~l~~l~~~----~p-dfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~ 234 (487)
..++|+.++|+|.... .. ..++++.+. .+ -++|.+||+...... .
T Consensus 33 ~~ltil~tnD~Hg~~~~~~~~~~G~a~~a~~i~~~r~~~~~~~~~~l~ldaGD~~~Gs~~-------------------s 93 (551)
T PRK09558 33 YKITILHTNDHHGHFWRNEYGEYGLAAQKTLVDQIRKEVAAEGGSVLLLSGGDINTGVPE-------------------S 93 (551)
T ss_pred eEEEEEEecccCCCccccccCCccHHHHHHHHHHHHHHhhccCCCEEEEcCCccccceEh-------------------h
Confidence 4689999999998632 11 234444322 34 478899999842110 0
Q ss_pred chhhHHHHHHHHhhhccccCCCEEEecCCcccccCccchhhHHhhcccCCCC---C----CCC-CCCcceEEEEeCCEEE
Q 039280 235 ETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPS---E----ESG-SSSSLYYSFNAGGIHF 306 (487)
Q Consensus 235 ~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~---~----~~~-~~~~~yYsf~~g~v~f 306 (487)
..+ ......+.|..+ ..= ..++||||+... ...+..+.....+|- | ..+ ..-..|.-++.+++++
T Consensus 94 ~~~--~g~~~i~~mN~~--g~D-a~tlGNHEFD~G--~~~L~~~~~~a~fp~l~aNv~~~~~g~~~~~py~i~~~~G~kI 166 (551)
T PRK09558 94 DLQ--DAEPDFRGMNLI--GYD-AMAVGNHEFDNP--LSVLRKQEKWAKFPFLSANIYQKSTGERLFKPYAIFDRQGLKI 166 (551)
T ss_pred hhc--CCchhHHHHhcC--CCC-EEcccccccCcC--HHHHHHhhccCCCCEEEEEEEECCCCCcccCCeEEEEECCEEE
Confidence 000 011112333333 222 566799999643 233333333333332 1 000 1123466678888654
Q ss_pred --EEEcCccc--C-----------CCChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHH
Q 039280 307 --VMLSAYID--Y-----------DKSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLY 371 (487)
Q Consensus 307 --i~Ldt~~~--~-----------~~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~ 371 (487)
|.+-+... + ....+..+-+-++|++. .+..-+|++.|.......... ..... -..|.+
T Consensus 167 giiG~~t~~~~~~~~~~~~~~~~f~d~~e~a~~~v~~Lk~~--~~~D~IV~LsH~G~~~~~~~~-~~~~~----d~~la~ 239 (551)
T PRK09558 167 AVIGLTTEDTAKIGNPEYFTDIEFRDPAEEAKKVIPELKQT--EKPDVIIALTHMGHYDDGEHG-SNAPG----DVEMAR 239 (551)
T ss_pred EEEEEeccccccccCCCCcCCceECCHHHHHHHHHHHHHhc--cCCCEEEEEeccccccCCccC-CCCcc----HHHHHH
Confidence 55433211 0 00112223333344431 346679999998875321110 00000 013333
Q ss_pred Hc---CCcEEEeCccccce
Q 039280 372 YY---GVDIVFNGHVHAYE 387 (487)
Q Consensus 372 ~~---~VdlvlsGH~H~ye 387 (487)
+. +||++|.||.|..-
T Consensus 240 ~~~~~~IDvIlgGHsH~~~ 258 (551)
T PRK09558 240 SLPAGGLDMIVGGHSQDPV 258 (551)
T ss_pred hCCccCceEEEeCCCCccc
Confidence 33 79999999999753
No 87
>PRK11907 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.43 E-value=0.0068 Score=68.05 Aligned_cols=47 Identities=21% Similarity=0.091 Sum_probs=27.5
Q ss_pred CCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccc
Q 039280 335 EVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAY 386 (487)
Q Consensus 335 ~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~y 386 (487)
....-+|++.|..+.........++. -..|.+--+||++|.||+|..
T Consensus 308 ~GaDvIIaLsH~G~~~d~~~~~~En~-----~~~LA~v~GIDaIvgGHsH~~ 354 (814)
T PRK11907 308 AGADIVLVLSHSGIGDDQYEVGEENV-----GYQIASLSGVDAVVTGHSHAE 354 (814)
T ss_pred cCCCEEEEEeCCCcccccccccccch-----hhHHhcCCCCCEEEECCCCCc
Confidence 35667999999876432111111111 112222347999999999985
No 88
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=97.33 E-value=0.00042 Score=63.43 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=32.1
Q ss_pred HHcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhccccCCCEEEecCCcccc
Q 039280 195 MSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIE 267 (487)
Q Consensus 195 ~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~ 267 (487)
.+.+||.|+++||+++... +. . ...+.... ........+|++.++||||..
T Consensus 38 ~~~~~d~lii~GDl~~~~~----~~----------------~-~~~~~~~~-~~~~~~~~~~v~~i~GNHD~~ 88 (172)
T cd07391 38 EEYGPERLIILGDLKHSFG----GL----------------S-RQEFEEVA-FLRLLAKDVDVILIRGNHDGG 88 (172)
T ss_pred HhcCCCEEEEeCccccccc----cc----------------C-HHHHHHHH-HHHhccCCCeEEEEcccCccc
Confidence 3468999999999995310 10 0 11222221 233335678999999999974
No 89
>PRK09418 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.15 E-value=0.011 Score=66.17 Aligned_cols=64 Identities=20% Similarity=0.041 Sum_probs=35.5
Q ss_pred CCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHc-CCcEEEeCccccceecccccCCccCCCCcEEEEeCCcccc
Q 039280 336 VTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYY-GVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGNV 413 (487)
Q Consensus 336 ~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~-~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~~ 413 (487)
.+.-+|++.|......... ...+ ..... +.+. +||++|.||+|..-.. . .+|+..+..|..|..
T Consensus 244 GaDvIIaLsH~G~~~d~~~---~~~e--na~~~-l~~v~gID~IlgGHsH~~~~~-~-------ingv~vvqaG~~G~~ 308 (780)
T PRK09418 244 GADVIVALAHSGVDKSGYN---VGME--NASYY-LTEVPGVDAVLMGHSHTEVKD-V-------FNGVPVVMPGVFGSN 308 (780)
T ss_pred CCCEEEEEeccCccccccc---ccch--hhhHH-HhcCCCCCEEEECCCCCcccc-c-------CCCEEEEEcChhhcE
Confidence 4667999999876432110 0000 11111 2343 7999999999986532 1 134555555655554
No 90
>PRK09419 bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase precursor protein; Reviewed
Probab=97.12 E-value=0.0072 Score=71.38 Aligned_cols=49 Identities=24% Similarity=0.227 Sum_probs=30.3
Q ss_pred CCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHH-cCCcEEEeCcccccee
Q 039280 335 EVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYY-YGVDIVFNGHVHAYER 388 (487)
Q Consensus 335 ~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~-~~VdlvlsGH~H~yeR 388 (487)
....-+|++.|............+ ....+|.++ -+||++|.||+|....
T Consensus 233 ~gaDvII~l~H~G~~~~~~~~~~e-----n~~~~la~~~~gID~Il~GHsH~~~~ 282 (1163)
T PRK09419 233 GGADVIVALAHSGIESEYQSSGAE-----DSVYDLAEKTKGIDAIVAGHQHGLFP 282 (1163)
T ss_pred cCCCEEEEEeccCcCCCCCCCCcc-----hHHHHHHHhCCCCcEEEeCCCccccc
Confidence 356679999998865432111111 222344434 3799999999998753
No 91
>PHA02239 putative protein phosphatase
Probab=97.12 E-value=0.001 Score=64.03 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=26.4
Q ss_pred cEEEEEecCCCCCCh-HHHHHHHHHc--CCCEEEEcCcccc
Q 039280 173 NRIAVVGDLGLTYNT-TTTVAHLMSN--HPDLLLLIGDLSY 210 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~-~~~l~~l~~~--~pdfvl~~GDl~y 210 (487)
||++++||+|..... .+.++.+... ..|.++++||++.
T Consensus 1 m~~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iD 41 (235)
T PHA02239 1 MAIYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVD 41 (235)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCC
Confidence 478999999965322 2344444332 3599999999995
No 92
>KOG2863 consensus RNA lariat debranching enzyme [RNA processing and modification]
Probab=97.10 E-value=0.0075 Score=59.82 Aligned_cols=182 Identities=24% Similarity=0.306 Sum_probs=101.7
Q ss_pred cEEEEEecCCCCCC-hHHHHHHHHHc---CCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhh
Q 039280 173 NRIAVVGDLGLTYN-TTTTVAHLMSN---HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYM 248 (487)
Q Consensus 173 ~~f~v~gD~~~~~~-~~~~l~~l~~~---~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~ 248 (487)
+||+|-|++|...+ .-+++..+.+. +.|++|++||+---. |++.- ..-.+-..|+.. ..|.+..
T Consensus 1 MrIaVqGCcHG~Ld~iYkti~~~ek~~~tkVDLLlccGDFQavR----n~~D~-------~siavPpKy~~m-~~F~~YY 68 (456)
T KOG2863|consen 1 MRIAVQGCCHGELDNIYKTISLIEKRGNTKVDLLLCCGDFQAVR----NEQDL-------KSIAVPPKYRRM-GDFYKYY 68 (456)
T ss_pred CceeeecccchhHHHHHHHHHHHHHcCCCCccEEEEccchHhhc----chhhc-------ccccCCHHHHHH-HHHHHHh
Confidence 58999999997643 33456666654 899999999985321 11110 001122345433 3344433
Q ss_pred -hccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCCCCCcceE-----EEEeCCEEEEEEcCc---ccCCC--
Q 039280 249 -QPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESGSSSSLYY-----SFNAGGIHFVMLSAY---IDYDK-- 317 (487)
Q Consensus 249 -~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~~~~~~yY-----sf~~g~v~fi~Ldt~---~~~~~-- 317 (487)
..+.+.+|.+++-||||.. +|... +|..+- ...+.|| ...+|||++-.|+.- .+|..
T Consensus 69 sge~~APVlTIFIGGNHEAs---------nyL~e--LpyGGw-VApNIyYlG~agVv~~~gvRIggiSGI~k~~dy~kgh 136 (456)
T KOG2863|consen 69 SGEIKAPVLTIFIGGNHEAS---------NYLQE--LPYGGW-VAPNIYYLGYAGVVNFGGVRIGGISGIYKEHDYRKGH 136 (456)
T ss_pred CCcccCceeEEEecCchHHH---------HHHHh--cccCce-eccceEEeeecceEEECCEEEeeccchhhhhhcccCC
Confidence 3456789999999999984 23322 232210 1234565 367899999999862 22211
Q ss_pred ---------------ChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHH-------H----------HHH
Q 039280 318 ---------------SSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVEC-------M----------RVE 365 (487)
Q Consensus 318 ---------------~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~-------~----------r~~ 365 (487)
.-.+.+ ...|++. +.|-=|.++|-=+-... .+++... + ...
T Consensus 137 ~E~ppyn~stiRsiYHvR~~d--V~~Lkql---k~piDIfLSHDWP~GI~--~yGd~~~LLr~KPFFrqeie~~~LGSp~ 209 (456)
T KOG2863|consen 137 FEWPPYNNSTIRSIYHVRISD--VAKLKQL---KHPIDIFLSHDWPRGIY--YYGDKKQLLRLKPFFRQEIEEGKLGSPA 209 (456)
T ss_pred CCCCCccchhhhhhhhhhhhh--hHHHHhh---cCcceEEeecCCCcchh--hcCCHHHHHhcCcHHHHHHhcCCcCChH
Confidence 011111 1223332 23445777885322111 1111111 1 246
Q ss_pred HHHHHHHcCCcEEEeCcccc
Q 039280 366 MEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 366 l~~l~~~~~VdlvlsGH~H~ 385 (487)
+++||++.+...+|+.|.|.
T Consensus 210 ~~eLL~~LkP~yWfsAHLH~ 229 (456)
T KOG2863|consen 210 LEELLEDLKPQYWFSAHLHV 229 (456)
T ss_pred HHHHHHHhCcchhhhhhHhh
Confidence 78899999999999999996
No 93
>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]
Probab=97.04 E-value=0.0091 Score=61.88 Aligned_cols=89 Identities=18% Similarity=0.323 Sum_probs=55.9
Q ss_pred CCcEEEEEecCCCCCC------hHHHHHHHHH-----cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhH
Q 039280 171 YPNRIAVVGDLGLTYN------TTTTVAHLMS-----NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQP 239 (487)
Q Consensus 171 ~~~~f~v~gD~~~~~~------~~~~l~~l~~-----~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~ 239 (487)
..+++++++|.|.+.. +...++.+.- .+...++.+||++. +. | .|..+..+..+.+-| .
T Consensus 224 e~v~v~~isDih~GSk~F~~~~f~~fi~wl~g~~~~a~~vkyliiagd~VD--Gi---g----iYpgq~~eL~i~di~-~ 293 (481)
T COG1311 224 ERVYVALISDIHRGSKEFLEDEFEKFIDWLNGPGDLASRVKYLIIAGDVVD--GI---G----IYPGQEEELVIADIY-E 293 (481)
T ss_pred cceEEEEEeeeecccHHHHHHHHHHHHHHhcCCcccccceEEEEEeccccc--cc---c----cccCcccccccccch-H
Confidence 4688999999998753 2233444431 24578999999994 22 1 111111111122222 3
Q ss_pred HHHHHHHhhhccccCCCEEEecCCcccccC
Q 039280 240 RWDYWGRYMQPLVSNVPTMVIEGEHEIERQ 269 (487)
Q Consensus 240 ~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~ 269 (487)
+++++.+++..+-..+-+++.|||||....
T Consensus 294 qy~~~A~~L~~vp~~I~v~i~PGnhDa~r~ 323 (481)
T COG1311 294 QYEELAEFLDQVPEHIKVFIMPGNHDAVRQ 323 (481)
T ss_pred HHHHHHHHHhhCCCCceEEEecCCCCcccc
Confidence 567777788877788899999999998644
No 94
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=96.99 E-value=0.0013 Score=63.25 Aligned_cols=69 Identities=17% Similarity=0.292 Sum_probs=41.1
Q ss_pred cEEEEEecCCCCCCh-HHHHHHHHH--c--------CCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHH
Q 039280 173 NRIAVVGDLGLTYNT-TTTVAHLMS--N--------HPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRW 241 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~-~~~l~~l~~--~--------~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w 241 (487)
+|++++||+|..... .++++++.- . +.|.++++||++.. |.. -
T Consensus 1 ~~i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDr------G~~--------------------s 54 (234)
T cd07423 1 GPFDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDR------GPD--------------------S 54 (234)
T ss_pred CCeEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCC------CCC--------------------H
Confidence 379999999986432 233444310 1 25899999999952 220 1
Q ss_pred HHHHHhhhccccCCCEEEecCCcccc
Q 039280 242 DYWGRYMQPLVSNVPTMVIEGEHEIE 267 (487)
Q Consensus 242 ~~~~~~~~~l~~~~P~~~v~GNHD~~ 267 (487)
.+..+.+..+...-.+.++.||||..
T Consensus 55 ~evl~~l~~l~~~~~~~~v~GNHE~~ 80 (234)
T cd07423 55 PEVLRLVMSMVAAGAALCVPGNHDNK 80 (234)
T ss_pred HHHHHHHHHHhhCCcEEEEECCcHHH
Confidence 12223333332233578999999973
No 95
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=96.95 E-value=0.0014 Score=64.49 Aligned_cols=67 Identities=21% Similarity=0.358 Sum_probs=41.9
Q ss_pred cEEEEEecCCCCCCh-HHHHHHHH-HcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhc
Q 039280 173 NRIAVVGDLGLTYNT-TTTVAHLM-SNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQP 250 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~-~~~l~~l~-~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~ 250 (487)
|+++++||+|..... .++++++. +.+.|.++++||++.. |.. . .+..+.+..
T Consensus 1 M~~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdr------Gp~------------------s--~~vl~~l~~ 54 (275)
T PRK00166 1 MATYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNR------GPD------------------S--LEVLRFVKS 54 (275)
T ss_pred CcEEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCC------CcC------------------H--HHHHHHHHh
Confidence 478999999976432 22344432 2367999999999952 221 0 122333333
Q ss_pred cccCCCEEEecCCcccc
Q 039280 251 LVSNVPTMVIEGEHEIE 267 (487)
Q Consensus 251 l~~~~P~~~v~GNHD~~ 267 (487)
+ ..++.++.||||..
T Consensus 55 l--~~~~~~VlGNHD~~ 69 (275)
T PRK00166 55 L--GDSAVTVLGNHDLH 69 (275)
T ss_pred c--CCCeEEEecChhHH
Confidence 3 34688999999974
No 96
>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain. PolD2 (DNA polymerase delta, subunit 2) is an auxiliary subunit of the eukaryotic DNA polymerase delta (PolD) complex thought to play a regulatory role and to serve as a scaffold for PolD assembly by interacting simultaneously with all of the other three subunits. PolD2 is catalytically inactive and lacks the active site residues required for phosphoesterase activity in other members of this superfamily. PolD2 is also involved in the recruitment of several proteins regulating DNA metabolism, including p21, PDIP1, PDIP38, PDIP46, and WRN. Human PolD consists of four subunits: p125 (PolD1), p50 (PolD2), p66(PolD3), and p12(PolD4). PolD is one of three major replicases in eukaryotes. PolD also plays an essential role in translesion DNA synthesis, homologous recombination, and DNA repair. Within the PolD complex, PolD2 tightly associates with PolD3. PolD2 belongs to the metallophosphatase (MPP) superfamily
Probab=96.92 E-value=0.011 Score=57.44 Aligned_cols=192 Identities=17% Similarity=0.186 Sum_probs=95.3
Q ss_pred EEEEecCCCCCChH------HHHHHHHH-----------cCCCEEEEcCccccccccccCCCccccccccCCCCcccchh
Q 039280 175 IAVVGDLGLTYNTT------TTVAHLMS-----------NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETY 237 (487)
Q Consensus 175 f~v~gD~~~~~~~~------~~l~~l~~-----------~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y 237 (487)
+++++|++.+.... ..++.|.- .+..-+|++||.+...+-..+......+ +........+
T Consensus 2 i~~vSgL~ig~~~~~~~~l~ll~d~L~G~~g~~~~~~~~s~I~rlIIaGn~v~~~~~~~~~~~~~~~---~~~~~~~~~~ 78 (257)
T cd07387 2 IALVSGLGLGGNAESSLSLQLLVDWLTGQLGDEEEQSSASSIVRLIIAGNSLSKSTQGKDSQTKARY---LTKKSSAASV 78 (257)
T ss_pred EEEEcccccCCCccchHHHHHHHHHhcCCCCCccccccccceEEEEEECCcccccccccchhhhhhc---cccccchhhH
Confidence 68899998875521 12223321 1344799999999532110000000000 0000001111
Q ss_pred hHHHHHHHHhhhccccCCCEEEecCCcccccCccch-hh-HHhhcccCCCCCCCCCCCcceEEEEeCCEEEEEEcCcc--
Q 039280 238 QPRWDYWGRYMQPLVSNVPTMVIEGEHEIERQAENQ-TF-AAYSSRFAFPSEESGSSSSLYYSFNAGGIHFVMLSAYI-- 313 (487)
Q Consensus 238 ~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~~~~~~~-~~-~~y~~~f~~P~~~~~~~~~~yYsf~~g~v~fi~Ldt~~-- 313 (487)
...+++..++..+.+.+|+...|||||-....-.+ .+ ..+..+-....+ -....|. |.|++++++|++.+...
T Consensus 79 -~~~~~ld~~l~~l~~~i~V~imPG~~Dp~~~~lPQqplh~~lfp~s~~~~~-~~~vtNP-~~~~i~g~~vLgtsGqni~ 155 (257)
T cd07387 79 -EAVKELDNFLSQLASSVPVDLMPGEFDPANHSLPQQPLHRCLFPKSSNYST-LNLVTNP-YEFSIDGVRVLGTSGQNVD 155 (257)
T ss_pred -HHHHHHHHHHHhhhcCCeEEECCCCCCcccccCCCCCCCHHHhhcccccCC-cEEeCCC-eEEEECCEEEEEECCCCHH
Confidence 34566677788888899999999999986432111 11 011000000000 0011222 46999999999998753
Q ss_pred ---cCCCChHHHHHHHHHhcccCC-CCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceec
Q 039280 314 ---DYDKSSDQYKWLESDLGDVDR-EVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERS 389 (487)
Q Consensus 314 ---~~~~~~~Q~~WL~~~L~~~~r-~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~ 389 (487)
.+...+.-++.|++.|+-..- ..+|=.+ +.|... +. .+++-+.-.+++|+||.|.|+..
T Consensus 156 Di~ky~~~~~~l~~me~~L~wrHlaPTaPDTL-----~~yP~~-----~~-------Dpfvi~~~PhVyf~Gnq~~f~t~ 218 (257)
T cd07387 156 DILKYSSLESRLDILERTLKWRHIAPTAPDTL-----WCYPFT-----DR-------DPFILEECPHVYFAGNQPKFGTK 218 (257)
T ss_pred HHHHhCCCCCHHHHHHHHHHhcccCCCCCCcc-----ccccCC-----CC-------CceeecCCCCEEEeCCCcceeee
Confidence 133345557778888765210 0111011 111100 00 02222334799999999998765
No 97
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=96.84 E-value=0.0026 Score=61.75 Aligned_cols=38 Identities=21% Similarity=0.345 Sum_probs=24.4
Q ss_pred cEEEEEecCCCCCCh-HHHHHHHHH---------cCCCEEEEcCcccc
Q 039280 173 NRIAVVGDLGLTYNT-TTTVAHLMS---------NHPDLLLLIGDLSY 210 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~-~~~l~~l~~---------~~pdfvl~~GDl~y 210 (487)
+|++++||+|..... .+.++++.- ..-|.++++||++.
T Consensus 1 ~~~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliD 48 (245)
T PRK13625 1 MKYDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTD 48 (245)
T ss_pred CceEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccC
Confidence 478999999976432 222333211 12368999999995
No 98
>COG4186 Predicted phosphoesterase or phosphohydrolase [General function prediction only]
Probab=96.76 E-value=0.016 Score=51.07 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=25.2
Q ss_pred EEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCcccc
Q 039280 340 LIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 340 ~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~ 385 (487)
.|+++|.|.-..... + ........+.++++.+.||.|.
T Consensus 110 ~~~LsHyP~~~~~~~--~------~~~r~~y~~~~~~llIHGH~H~ 147 (186)
T COG4186 110 DVYLSHYPRPGQDHP--G------MESRFDYLRLRVPLLIHGHLHS 147 (186)
T ss_pred EEEEEeCCCCCCCCc--c------hhhhHHHHhccCCeEEeccccc
Confidence 799999997543211 1 1222334456899999999998
No 99
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=96.74 E-value=0.0041 Score=59.45 Aligned_cols=70 Identities=19% Similarity=0.342 Sum_probs=44.8
Q ss_pred cEEEEEecCCCCCCh--------------HHHHHHHH----HcCCCEEEEcCccccccccccCCCccccccccCCCCccc
Q 039280 173 NRIAVVGDLGLTYNT--------------TTTVAHLM----SNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQ 234 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~--------------~~~l~~l~----~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~ 234 (487)
-+.++++|+|.+... .++++++. +.+||.++++||+..... .
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~~~-----~--------------- 74 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHEFK-----K--------------- 74 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccccC-----C---------------
Confidence 367899999987421 13455443 357999999999995311 0
Q ss_pred chhhHHHHHHHHhhhccccCCCEEEecCCcccc
Q 039280 235 ETYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIE 267 (487)
Q Consensus 235 ~~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~ 267 (487)
...|..+.+.++.+ ..+++.++||||..
T Consensus 75 ---~~~~~~~~~~l~~~--~~~v~~V~GNHD~~ 102 (225)
T TIGR00024 75 ---GLEWRFIREFIEVT--FRDLILIRGNHDAL 102 (225)
T ss_pred ---hHHHHHHHHHHHhc--CCcEEEECCCCCCc
Confidence 01233344444443 35899999999963
No 100
>PRK09420 cpdB bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein; Reviewed
Probab=96.71 E-value=0.032 Score=61.69 Aligned_cols=46 Identities=22% Similarity=0.153 Sum_probs=26.6
Q ss_pred CCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHH-cCCcEEEeCccccc
Q 039280 335 EVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYY-YGVDIVFNGHVHAY 386 (487)
Q Consensus 335 ~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~-~~VdlvlsGH~H~y 386 (487)
....-+|++.|............+ +.... +.+ -+||++|.||+|..
T Consensus 217 ~gaDvII~LsH~G~~~d~~~~~ae-----n~~~~-l~~v~gID~Il~GHsH~~ 263 (649)
T PRK09420 217 KGADIVVAIPHSGISADPYKAMAE-----NSVYY-LSEVPGIDAIMFGHSHAV 263 (649)
T ss_pred cCCCEEEEEecCCcCCCCcccccc-----chhHH-HhcCCCCCEEEeCCCCcc
Confidence 346679999998764321000011 11111 233 47999999999975
No 101
>TIGR01390 CycNucDiestase 2',3'-cyclic-nucleotide 2'-phosphodiesterase. 2',3'-cyclic-nucleotide 2'-phosphodiesterase is a bifunctional enzyme localized to the periplasm of Gram-negative bacteria. 2',3'-cyclic-nucleotide 2'-phosphodiesters are intermediates formed during the hydrolysis of RNA by the ribonuclease I, which is also found to the periplasm, and other enzymes of the RNAse T2 family. Bacteria are unable to transport 2',3'-cyclic-nucleotides into the cytoplasm. 2',3'-cyclic-nucleotide 2'-phosphodiesterase contains 2 active sites which catalyze the reactions that convert the 2',3'-cyclic-nucleotide into a 3'-nucleotide, which is then converted into nucleic acid and phosphate. Both final products can be transported into the cytoplasm. Thus, it has been suggested that 2',3'-cyclic-nucleotide 2'-phosphodiesterase has a 'scavenging' function. Experimental evidence indicates that 2',3'-cyclic-nucleotide 2'-phosphodiesterase enables Yersinia enterocolitica O:8 to grow on 2'3'-cAMP as a
Probab=96.67 E-value=0.042 Score=60.60 Aligned_cols=45 Identities=24% Similarity=0.146 Sum_probs=26.6
Q ss_pred CCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHH-cCCcEEEeCccccc
Q 039280 336 VTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYY-YGVDIVFNGHVHAY 386 (487)
Q Consensus 336 ~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~-~~VdlvlsGH~H~y 386 (487)
...-+|++.|............++ .. ..+.+ -+||++|.||+|..
T Consensus 195 gaDvII~LsH~G~~~d~~~~~~en-----~~-~~l~~v~gID~Il~GHsH~~ 240 (626)
T TIGR01390 195 GADIIVALAHSGISADPYQPGAEN-----SA-YYLTKVPGIDAVLFGHSHAV 240 (626)
T ss_pred CCCEEEEEeccCcCCCccccccch-----HH-HHHhcCCCCCEEEcCCCCcc
Confidence 466799999987643210000111 11 12333 37999999999975
No 102
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=96.34 E-value=0.19 Score=47.83 Aligned_cols=188 Identities=16% Similarity=0.223 Sum_probs=101.7
Q ss_pred cEEEEEecCCCCCChHHH---HHHHHH-cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhh
Q 039280 173 NRIAVVGDLGLTYNTTTT---VAHLMS-NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYM 248 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~~~~---l~~l~~-~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~ 248 (487)
+|++++||+=.......+ +..+++ .++||||..|-.+-. |..- .|+.+..++
T Consensus 1 mriLfiGDvvGk~Gr~~v~~~Lp~lk~kyk~dfvI~N~ENaa~------G~Gi------------------t~k~y~~l~ 56 (266)
T COG1692 1 MRILFIGDVVGKPGRKAVKEHLPQLKSKYKIDFVIVNGENAAG------GFGI------------------TEKIYKELL 56 (266)
T ss_pred CeEEEEecccCcchHHHHHHHhHHHHHhhcCcEEEEcCccccC------CcCC------------------CHHHHHHHH
Confidence 589999999665443333 334443 489999999998842 3210 123333333
Q ss_pred hccccCCCEEEecCCcccccCccchhhHHhhcccCCCCCCCC-CCCcceEEEEeCCEEEEEEcC--cccCC-CChHHHHH
Q 039280 249 QPLVSNVPTMVIEGEHEIERQAENQTFAAYSSRFAFPSEESG-SSSSLYYSFNAGGIHFVMLSA--YIDYD-KSSDQYKW 324 (487)
Q Consensus 249 ~~l~~~~P~~~v~GNHD~~~~~~~~~~~~y~~~f~~P~~~~~-~~~~~yYsf~~g~v~fi~Ldt--~~~~~-~~~~Q~~W 324 (487)
+. .+- +++.|||=+....- ..|..-..++-.|.|-+. ..+..|.-|...+..+.+.|- ..... ....-.+=
T Consensus 57 ~~---G~d-viT~GNH~wd~~ei-~~~i~~~~~ilRP~N~p~~~~G~G~~~f~~ng~ki~V~Nl~Grv~m~~~~d~PF~~ 131 (266)
T COG1692 57 EA---GAD-VITLGNHTWDQKEI-LDFIDNADRILRPANYPDGTPGKGSRIFKINGKKLAVINLMGRVFMPPALDNPFKA 131 (266)
T ss_pred Hh---CCC-EEecccccccchHH-HHHhhcccceeccCCCCCCCCcceEEEEEeCCcEEEEEEeeccccCccccCCHHHH
Confidence 21 222 57889998753210 111111222334444322 335567777787766655553 22221 12333444
Q ss_pred HHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCccCCCCcEE
Q 039280 325 LESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGPVY 404 (487)
Q Consensus 325 L~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vy 404 (487)
+++.|.+.+ ..++.+||-+|.-.-+ + .++| -++-+..|.+|+.=|+|.-.--. .+-++|+.|
T Consensus 132 ~d~l~~~~~-~~~~~iiVDFHAEtTS-------E----K~a~-g~yldGrvsavvGTHTHV~TaD~-----rIL~~GTay 193 (266)
T COG1692 132 ADKLLDEIK-LGTDLIIVDFHAETTS-------E----KNAF-GWYLDGRVSAVVGTHTHVPTADE-----RILPKGTAY 193 (266)
T ss_pred HHHHHHhCc-cCCceEEEEccccchh-------h----hhhh-heEEcCeEEEEEeccCccccccc-----eecCCCcEE
Confidence 666666543 3456799999953221 1 1111 22334578999999999643332 224688999
Q ss_pred EEe
Q 039280 405 ILV 407 (487)
Q Consensus 405 Iv~ 407 (487)
|+-
T Consensus 194 iTD 196 (266)
T COG1692 194 ITD 196 (266)
T ss_pred Eec
Confidence 863
No 103
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=96.34 E-value=0.0046 Score=59.03 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=23.4
Q ss_pred EEEEecCCCCCCh-HHHHHHHHHc--------CCCEEEEcCcccc
Q 039280 175 IAVVGDLGLTYNT-TTTVAHLMSN--------HPDLLLLIGDLSY 210 (487)
Q Consensus 175 f~v~gD~~~~~~~-~~~l~~l~~~--------~pdfvl~~GDl~y 210 (487)
+.++||+|..... .+.++++... ..|.++++||++.
T Consensus 1 ~~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~ID 45 (222)
T cd07413 1 YDFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLID 45 (222)
T ss_pred CEEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccC
Confidence 3689999987432 2233333211 3579999999995
No 104
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=96.23 E-value=0.0035 Score=59.69 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=26.1
Q ss_pred EEEEEecCCCCCCh-HHHHHHHH-HcCCCEEEEcCcccc
Q 039280 174 RIAVVGDLGLTYNT-TTTVAHLM-SNHPDLLLLIGDLSY 210 (487)
Q Consensus 174 ~f~v~gD~~~~~~~-~~~l~~l~-~~~pdfvl~~GDl~y 210 (487)
|++++||+|..... .++++.+. ..+.|.++++||++.
T Consensus 16 ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vd 54 (218)
T PRK09968 16 HIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNID 54 (218)
T ss_pred eEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcC
Confidence 89999999976432 22333332 236799999999995
No 105
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=96.16 E-value=0.15 Score=49.00 Aligned_cols=188 Identities=16% Similarity=0.192 Sum_probs=89.1
Q ss_pred EEEecCCCCCChH---HHHHHHHH-cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhcc
Q 039280 176 AVVGDLGLTYNTT---TTVAHLMS-NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPL 251 (487)
Q Consensus 176 ~v~gD~~~~~~~~---~~l~~l~~-~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l 251 (487)
+++||+=...... ..|.+|.+ .++||||..|..+-. |..- . +...+++++.
T Consensus 1 LfiGDIvG~~Gr~~v~~~Lp~L~~~~~~DfVIaNgENaa~------G~Gi------------t---~~~~~~L~~~---- 55 (253)
T PF13277_consen 1 LFIGDIVGKPGRRAVKEHLPELKEEYGIDFVIANGENAAG------GFGI------------T---PKIAEELFKA---- 55 (253)
T ss_dssp EEE-EBBCHHHHHHHHHHHHHHGG--G-SEEEEE-TTTTT------TSS-----------------HHHHHHHHHH----
T ss_pred CeEEecCCHHHHHHHHHHHHHHHhhcCCCEEEECCcccCC------CCCC------------C---HHHHHHHHhc----
Confidence 4678874432222 22344443 489999999999842 3211 0 1222222222
Q ss_pred ccCCCEEEecCCcccccCccchhhHHhhc---ccCCCCCCCC-CCCcceEEEEeCCEEEEEEcC--cccCCCChHHHHHH
Q 039280 252 VSNVPTMVIEGEHEIERQAENQTFAAYSS---RFAFPSEESG-SSSSLYYSFNAGGIHFVMLSA--YIDYDKSSDQYKWL 325 (487)
Q Consensus 252 ~~~~P~~~v~GNHD~~~~~~~~~~~~y~~---~f~~P~~~~~-~~~~~yYsf~~g~v~fi~Ldt--~~~~~~~~~Q~~WL 325 (487)
.+- ..+.|||=+... ....|.. +.-.|.|-+. ..+..|..++.++..+-++|- .........-+.-+
T Consensus 56 --GvD-viT~GNH~wdkk----ei~~~i~~~~~ilRPaN~p~~~pG~G~~i~~~~g~kv~ViNl~Gr~fm~~~~~PF~~~ 128 (253)
T PF13277_consen 56 --GVD-VITMGNHIWDKK----EIFDFIDKEPRILRPANYPPGTPGRGYRIFEKNGKKVAVINLMGRVFMPPIDCPFRAA 128 (253)
T ss_dssp --T-S-EEE--TTTTSST----THHHHHHH-SSEE--TTS-TT-SSBSEEEEEETTEEEEEEEEE--TTS---S-HHHHH
T ss_pred --CCC-EEecCcccccCc----HHHHHHhcCCCcEECCCCCCCCCcCcEEEEEECCEEEEEEECcccccCCCCCChHHHH
Confidence 233 468899988632 2333322 2334544332 456778899999877777663 32222222334445
Q ss_pred HHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceecccccCCccCCCCcEEE
Q 039280 326 ESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYI 405 (487)
Q Consensus 326 ~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyI 405 (487)
++.|++. +.+++.+||=+|.=. .....+| -.+-+-+|.+|+.=|+|.-.-- ..+-|.|+-||
T Consensus 129 d~~l~~l-~~~~~~iiVDFHAEa-----------TSEK~A~-g~~lDGrvsaV~GTHTHVqTaD-----erILp~GTaYi 190 (253)
T PF13277_consen 129 DRLLEEL-KEETDIIIVDFHAEA-----------TSEKQAM-GWYLDGRVSAVVGTHTHVQTAD-----ERILPGGTAYI 190 (253)
T ss_dssp HHHHHH------SEEEEEEE-S------------HHHHHHH-HHHHBTTBSEEEEESSSS-BS-------EE-TTS-EEE
T ss_pred HHHHHhc-cccCCEEEEEeecCc-----------HHHHHHH-HHHhCCcEEEEEeCCCCccCch-----hhccCCCCEEE
Confidence 5555543 245678999999422 1112222 3455668999999999964322 22346899998
Q ss_pred Ee-CCcccc
Q 039280 406 LV-GDGGNV 413 (487)
Q Consensus 406 v~-G~gG~~ 413 (487)
+- |.-|..
T Consensus 191 TDvGMtG~~ 199 (253)
T PF13277_consen 191 TDVGMTGPY 199 (253)
T ss_dssp S---EBEES
T ss_pred ecCccccCc
Confidence 63 444443
No 106
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=96.11 E-value=0.036 Score=43.33 Aligned_cols=76 Identities=29% Similarity=0.369 Sum_probs=46.7
Q ss_pred CCceEEEeeccCCCcEEEEEEcCCCCCCCCCCCCCCCCCccEEEEeccCCCCceEEEEEEEEeeeecCCCCCCccccCcE
Q 039280 49 QPEQIFVSLSARYDSVWISWITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGYSLVYNQLYPPDGLQNYTSGII 128 (487)
Q Consensus 49 ~P~qi~l~~~~~~~~~~V~W~T~~~~~~~~~~~~~~~~~~~~V~yg~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~ 128 (487)
.|+.+++.-.+ ++++.|+|...... +. ....-.|+|....+..... .... ..-.
T Consensus 2 ~P~~l~v~~~~-~~sv~v~W~~~~~~-~~-------~~~~y~v~~~~~~~~~~~~----~~~~-------------~~~~ 55 (85)
T PF00041_consen 2 APENLSVSNIS-PTSVTVSWKPPSSG-NG-------PITGYRVEYRSVNSTSDWQ----EVTV-------------PGNE 55 (85)
T ss_dssp SSEEEEEEEEC-SSEEEEEEEESSST-SS-------SESEEEEEEEETTSSSEEE----EEEE-------------ETTS
T ss_pred cCcCeEEEECC-CCEEEEEEECCCCC-CC-------CeeEEEEEEEecccceeee----eeee-------------eeee
Confidence 47888887764 78999999998511 11 1123456665554332111 1101 1112
Q ss_pred EEEEeCCCCCCCEEEEEEecCC
Q 039280 129 HHVLITGLQPNTLYEYECGDPS 150 (487)
Q Consensus 129 h~v~l~gL~P~T~Y~Y~vg~~~ 150 (487)
+.++|++|+|+|.|.++|..-.
T Consensus 56 ~~~~i~~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 56 TSYTITGLQPGTTYEFRVRAVN 77 (85)
T ss_dssp SEEEEESCCTTSEEEEEEEEEE
T ss_pred eeeeeccCCCCCEEEEEEEEEe
Confidence 3788999999999999997543
No 107
>COG5555 Cytolysin, a secreted calcineurin-like phosphatase [Cell motility and secretion]
Probab=96.01 E-value=0.019 Score=55.35 Aligned_cols=142 Identities=20% Similarity=0.310 Sum_probs=85.4
Q ss_pred hhccccCCCEEEecCCcccccCccc-------hhhHHhhccc------CCCCCCC--CCCCcceEEEEeCCEEEEEEcCc
Q 039280 248 MQPLVSNVPTMVIEGEHEIERQAEN-------QTFAAYSSRF------AFPSEES--GSSSSLYYSFNAGGIHFVMLSAY 312 (487)
Q Consensus 248 ~~~l~~~~P~~~v~GNHD~~~~~~~-------~~~~~y~~~f------~~P~~~~--~~~~~~yYsf~~g~v~fi~Ldt~ 312 (487)
..++.-.+|+++-.||||...+.-. .+...|...+ ..|.-.. -..-..-||++.|++|.+-+-+.
T Consensus 164 vG~~h~H~PvYvGlgnhdldq~gpph~~DWyRrElrdyve~~Hr~~vf~Kppvp~atYd~l~d~ySwdwgglhlvh~hrf 243 (392)
T COG5555 164 VGNIHMHYPVYVGLGNHDLDQKGPPHSLDWYRRELRDYVENYHRSDVFWKPPVPPATYDQLKDRYSWDWGGLHLVHYHRF 243 (392)
T ss_pred CCCceeeeeeEeccCchhhcccCCCCchhHHHHHHHHHHHhhcCcCcccCCCCCcccccccchheeccccceeEEEEeee
Confidence 3444456999999999999754221 1122222211 1111111 12334568999999999888664
Q ss_pred ccCC-C-ChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcch----------------hHHHHHHHHHHHHHcC
Q 039280 313 IDYD-K-SSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYRE----------------VECMRVEMEDLLYYYG 374 (487)
Q Consensus 313 ~~~~-~-~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~----------------~~~~r~~l~~l~~~~~ 374 (487)
..-. . ...-+-||+.+|........| ++++.|.-+-.-....++. ....|..|...++-|+
T Consensus 244 ~Gd~~~ga~sslpwlk~dl~~~aadgrp-v~LfqhyGwdtfsteawdpAsrT~Dd~Gsgaphww~a~er~all~~lqGYN 322 (392)
T COG5555 244 IGDAEPGANSSLPWLKVDLIYSAADGRP-VYLFQHYGWDTFSTEAWDPASRTLDDTGSGAPHWWPAPERGALLFFLQGYN 322 (392)
T ss_pred ccccCCCccccCcceeccceeeccCCCc-eeehhhhCccceeccccCchhcccccCCCCCCCCCCCCCcchHHHhhcCce
Confidence 3211 1 234567999999875444555 8889997654321111110 1123677888889999
Q ss_pred CcEEEeCccccceecc
Q 039280 375 VDIVFNGHVHAYERSN 390 (487)
Q Consensus 375 VdlvlsGH~H~yeR~~ 390 (487)
|.-.+.||.|...-.+
T Consensus 323 vvg~fhGhkhd~~may 338 (392)
T COG5555 323 VVGTFHGHKHDFNMAY 338 (392)
T ss_pred eEEeccccccccceee
Confidence 9999999999874443
No 108
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=96.01 E-value=0.0088 Score=58.30 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=39.3
Q ss_pred EEEecCCCCCCh-HHHHHHHHH-cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhHHHHHHHHhhhcccc
Q 039280 176 AVVGDLGLTYNT-TTTVAHLMS-NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQPRWDYWGRYMQPLVS 253 (487)
Q Consensus 176 ~v~gD~~~~~~~-~~~l~~l~~-~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~~w~~~~~~~~~l~~ 253 (487)
.++||+|..... .++++++.. .+.|.++++||++.. |.. . .+..+.+..+.
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdR------Gp~------------------s--~evl~~l~~l~- 54 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNR------GPD------------------S--LETLRFVKSLG- 54 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCC------CcC------------------H--HHHHHHHHhcC-
Confidence 589999986432 233444432 257999999999952 221 0 12233333332
Q ss_pred CCCEEEecCCcccc
Q 039280 254 NVPTMVIEGEHEIE 267 (487)
Q Consensus 254 ~~P~~~v~GNHD~~ 267 (487)
..+..+.||||..
T Consensus 55 -~~v~~VlGNHD~~ 67 (257)
T cd07422 55 -DSAKTVLGNHDLH 67 (257)
T ss_pred -CCeEEEcCCchHH
Confidence 3678999999974
No 109
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=95.93 E-value=0.0075 Score=57.33 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=23.3
Q ss_pred EEEecCCCCCCh-HHHHHHHHHcCCCEEEEcCcccc
Q 039280 176 AVVGDLGLTYNT-TTTVAHLMSNHPDLLLLIGDLSY 210 (487)
Q Consensus 176 ~v~gD~~~~~~~-~~~l~~l~~~~pdfvl~~GDl~y 210 (487)
.++||+|..... .+.++.+.....|.+|++||++.
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~~~~d~li~lGD~vd 36 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGFPPNDKLIFLGDYVD 36 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCCCCCCEEEEECCEeC
Confidence 379999975322 12233333347899999999995
No 110
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=95.91 E-value=0.1 Score=50.31 Aligned_cols=128 Identities=13% Similarity=0.159 Sum_probs=64.1
Q ss_pred CCCEEEecCCcccccCccchhhHHh---hcccCCCCCCCCC---CCcceEEEEeCCE--EEEEEcCcccCC---------
Q 039280 254 NVPTMVIEGEHEIERQAENQTFAAY---SSRFAFPSEESGS---SSSLYYSFNAGGI--HFVMLSAYIDYD--------- 316 (487)
Q Consensus 254 ~~P~~~v~GNHD~~~~~~~~~~~~y---~~~f~~P~~~~~~---~~~~yYsf~~g~v--~fi~Ldt~~~~~--------- 316 (487)
.+-++.+.+||+++... +.+... .+...++..+.+. ....+..++.+++ .|+.+.+.....
T Consensus 77 G~d~~tlaNNH~fD~G~--~gl~~t~~~l~~~~i~~~g~~~~~~~~~~~~i~~~~g~kVg~ig~t~~~~~~~~~~~~~~~ 154 (239)
T cd07381 77 GFDVVSLANNHTLDYGE--EGLLDTLDALDEAGIAHAGAGRNLEEARRPAILEVNGIKVAFLAYTYGTNGIPLAAGARPG 154 (239)
T ss_pred CCCEEEcccccccccch--HHHHHHHHHHHHcCCceeECCCCHHHhcCcEEEEECCEEEEEEEEECCCCCCcCcccCCcc
Confidence 44555555699997432 223222 1222333322211 1134556778874 555554422110
Q ss_pred -CChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceec
Q 039280 317 -KSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERS 389 (487)
Q Consensus 317 -~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~ 389 (487)
......+-+++.+++.+. +...+||+.|-........ . .....+...+.+.++|+++.||.|..+-.
T Consensus 155 ~~~~~~~~~~~~~i~~lr~-~~D~vIv~~H~G~e~~~~p----~-~~~~~la~~l~~~G~D~IiG~H~Hv~q~~ 222 (239)
T cd07381 155 GVNPLDLERIAADIAEAKK-KADIVIVSLHWGVEYSYYP----T-PEQRELARALIDAGADLVIGHHPHVLQGI 222 (239)
T ss_pred ccCccCHHHHHHHHHHHhh-cCCEEEEEecCcccCCCCC----C-HHHHHHHHHHHHCCCCEEEcCCCCcCCCe
Confidence 011112335555554432 3678999999654221111 1 12234444555679999999999976543
No 111
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=95.81 E-value=0.014 Score=57.36 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=26.8
Q ss_pred cEEEEEecCCCCCCh-HHHHHHHH-HcCCCEEEEcCcccc
Q 039280 173 NRIAVVGDLGLTYNT-TTTVAHLM-SNHPDLLLLIGDLSY 210 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~-~~~l~~l~-~~~pdfvl~~GDl~y 210 (487)
+++.++||+|..... .+.++++. +...|-++++||++.
T Consensus 1 m~~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVd 40 (279)
T TIGR00668 1 MATYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVA 40 (279)
T ss_pred CcEEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccC
Confidence 357899999987542 34455553 235689999999995
No 112
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=95.76 E-value=0.016 Score=57.04 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=25.6
Q ss_pred EEEEEecCCCCCCh-HHHHHHHHHc------CCCEEEEcCcccc
Q 039280 174 RIAVVGDLGLTYNT-TTTVAHLMSN------HPDLLLLIGDLSY 210 (487)
Q Consensus 174 ~f~v~gD~~~~~~~-~~~l~~l~~~------~pdfvl~~GDl~y 210 (487)
+++++||+|..... .++++.+.+. ..+.+|++||++.
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVD 46 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCD 46 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCC
Confidence 68999999987543 3334444322 3568999999995
No 113
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=95.59 E-value=0.18 Score=48.65 Aligned_cols=59 Identities=19% Similarity=0.242 Sum_probs=34.5
Q ss_pred HHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccccceec
Q 039280 325 LESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVHAYERS 389 (487)
Q Consensus 325 L~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H~yeR~ 389 (487)
+++.+++.+ ++...+||+.|--.-..... ... ...+..-+.+.++|+++.||.|..+..
T Consensus 162 i~~~i~~lr-~~~D~vIv~~H~G~e~~~~p----~~~-~~~~A~~l~~~G~DvIiG~H~H~~~~~ 220 (239)
T smart00854 162 ILADIARAR-KKADVVIVSLHWGVEYQYEP----TDE-QRELAHALIDAGADVVIGHHPHVLQPI 220 (239)
T ss_pred HHHHHHHHh-ccCCEEEEEecCccccCCCC----CHH-HHHHHHHHHHcCCCEEEcCCCCcCCce
Confidence 444444432 24678999999665322111 111 233434444479999999999987644
No 114
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=95.12 E-value=0.053 Score=51.65 Aligned_cols=72 Identities=24% Similarity=0.416 Sum_probs=45.2
Q ss_pred EEEEEecCCCCCCh--------------HH---HHHHH-HHcCCCEEEEcCccccccccccCCCccccccccCCCCcccc
Q 039280 174 RIAVVGDLGLTYNT--------------TT---TVAHL-MSNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQE 235 (487)
Q Consensus 174 ~f~v~gD~~~~~~~--------------~~---~l~~l-~~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~ 235 (487)
+.++++|+|.+... .+ .++++ .+.+|+-++.+||+-.+- +.
T Consensus 21 ~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~~-----~~---------------- 79 (235)
T COG1407 21 RTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHEF-----GK---------------- 79 (235)
T ss_pred cEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCcccccc-----Cc----------------
Confidence 68999999998532 11 23322 346999999999998531 11
Q ss_pred hhhHHHHHHHHhhhccccCCCEEEecCCcccc
Q 039280 236 TYQPRWDYWGRYMQPLVSNVPTMVIEGEHEIE 267 (487)
Q Consensus 236 ~y~~~w~~~~~~~~~l~~~~P~~~v~GNHD~~ 267 (487)
.....|+....+++.+... -++.+.||||-+
T Consensus 80 ~~~~e~~~~~~f~~~~~~~-evi~i~GNHD~~ 110 (235)
T COG1407 80 SLRQEKEEVREFLELLDER-EVIIIRGNHDNG 110 (235)
T ss_pred cccccHHHHHHHHHHhccC-cEEEEeccCCCc
Confidence 0123455444444444332 499999999975
No 115
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=94.10 E-value=0.59 Score=45.34 Aligned_cols=128 Identities=12% Similarity=0.135 Sum_probs=71.1
Q ss_pred CCCEEEecCCcccccCccchhhH---HhhcccCCCCCCCCC---CCcceEEEEeCCEEEEEEcCcccC---C--------
Q 039280 254 NVPTMVIEGEHEIERQAENQTFA---AYSSRFAFPSEESGS---SSSLYYSFNAGGIHFVMLSAYIDY---D-------- 316 (487)
Q Consensus 254 ~~P~~~v~GNHD~~~~~~~~~~~---~y~~~f~~P~~~~~~---~~~~yYsf~~g~v~fi~Ldt~~~~---~-------- 316 (487)
.+-++.+.-||.++... +.+. ...+...++..+.+. .......++.+++++-+|...... .
T Consensus 75 G~d~vslANNH~~D~G~--~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~~~~~~~~~~~~~~~ 152 (250)
T PF09587_consen 75 GFDVVSLANNHIFDYGE--EGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTDGENGYSSANGNRPY 152 (250)
T ss_pred CCCEEEecCCCCccccH--HHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEcCCCCCccccccccc
Confidence 55677777899886432 2222 122233333322111 122345577788666555421100 0
Q ss_pred ------------CChHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHcCCcEEEeCccc
Q 039280 317 ------------KSSDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYYGVDIVFNGHVH 384 (487)
Q Consensus 317 ------------~~~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~~VdlvlsGH~H 384 (487)
....+.+.+++++++++ ++..++||+.|--.-.... ... ....+...+-+.|+|+|+.+|.|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~i~~~i~~~r-~~~D~vIv~~HwG~e~~~~----p~~-~q~~~a~~lidaGaDiIiG~HpH 226 (250)
T PF09587_consen 153 GFSYRPDKAGLNPNRPGIERIKEDIREAR-KKADVVIVSLHWGIEYENY----PTP-EQRELARALIDAGADIIIGHHPH 226 (250)
T ss_pred cccccccccccccccchHHHHHHHHHHHh-cCCCEEEEEeccCCCCCCC----CCH-HHHHHHHHHHHcCCCEEEeCCCC
Confidence 01234477888888765 5678899999964321111 112 23445455555899999999999
Q ss_pred cceec
Q 039280 385 AYERS 389 (487)
Q Consensus 385 ~yeR~ 389 (487)
..+-.
T Consensus 227 v~q~~ 231 (250)
T PF09587_consen 227 VIQPV 231 (250)
T ss_pred cccce
Confidence 87655
No 116
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=92.87 E-value=0.13 Score=51.62 Aligned_cols=23 Identities=9% Similarity=0.041 Sum_probs=19.7
Q ss_pred HHHHHHHHHHcCCcEEEeCcccc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~H~ 385 (487)
.+.+++.+++++.++++=||.=.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~ 244 (305)
T cd07416 222 YRAVCEFLQKNNLLSIIRAHEAQ 244 (305)
T ss_pred HHHHHHHHHHcCCeEEEEecccc
Confidence 46788999999999999999843
No 117
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=92.76 E-value=0.18 Score=50.81 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCcEEEeCcccc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~H~ 385 (487)
.+.+...+++++.++++=||.-.
T Consensus 253 ~~~~~~Fl~~n~l~~IIR~He~v 275 (321)
T cd07420 253 PDVTSKVLQKHGLSLLIRSHECK 275 (321)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 56788999999999999999853
No 118
>KOG4419 consensus 5' nucleotidase [Nucleotide transport and metabolism]
Probab=92.66 E-value=1.5 Score=47.04 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=38.0
Q ss_pred hHHHHHHHHHhcccCCCCCCeEEEEcCCCccccCCCCcchhHHHHHHHHHHHHHc-CCcE-EEeCcccccee
Q 039280 319 SDQYKWLESDLGDVDREVTPWLIAAWHPPWYSTYSAHYREVECMRVEMEDLLYYY-GVDI-VFNGHVHAYER 388 (487)
Q Consensus 319 ~~Q~~WL~~~L~~~~r~~~~w~Iv~~H~P~y~~~~~~~~~~~~~r~~l~~l~~~~-~Vdl-vlsGH~H~yeR 388 (487)
-.|.+|-.+.++. ....-+|++.|.|.-.. ......+..+...+ ++++ ||-||.|....
T Consensus 211 i~~~~~~~~m~~~---~~idlii~lgH~~~~~~--------~e~~~~~~~ir~~~p~t~IqviGGHshird~ 271 (602)
T KOG4419|consen 211 ITQSEWEQDMVNT---TDIDLIIALGHSPVRDD--------DEWKSLHAEIRKVHPNTPIQVIGGHSHIRDF 271 (602)
T ss_pred HhccchHHHHhhc---cCccEEEEecccccccc--------hhhhhHHHHHhhhCCCCceEEECchhhhhhh
Confidence 4567887777776 34556899999986431 11112444455555 5788 99999997443
No 119
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=92.57 E-value=0.17 Score=49.79 Aligned_cols=21 Identities=10% Similarity=0.295 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCcEEEeCcc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHV 383 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~ 383 (487)
.+.+.+.++++++++++-||.
T Consensus 200 ~~~~~~Fl~~n~l~~iiR~He 220 (271)
T smart00156 200 PDAVDEFLKKNNLKLIIRAHQ 220 (271)
T ss_pred HHHHHHHHHHCCCeEEEecCc
Confidence 467889999999999999997
No 120
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=92.57 E-value=0.4 Score=50.47 Aligned_cols=41 Identities=34% Similarity=0.451 Sum_probs=31.9
Q ss_pred CcEEEEEecCCCCCC---------hHHHHHHHH----HcCCCEEEEcCcccccc
Q 039280 172 PNRIAVVGDLGLTYN---------TTTTVAHLM----SNHPDLLLLIGDLSYAD 212 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~---------~~~~l~~l~----~~~pdfvl~~GDl~y~d 212 (487)
.+||++..|.|.++. ...++++|+ +++.||||..|||...+
T Consensus 13 tirILVaTD~HlGY~EkD~vrg~DSf~tFeEIl~iA~e~~VDmiLlGGDLFHeN 66 (646)
T KOG2310|consen 13 TIRILVATDNHLGYGEKDAVRGDDSFVTFEEILEIAQENDVDMILLGGDLFHEN 66 (646)
T ss_pred ceEEEEeecCccccccCCcccccchHHHHHHHHHHHHhcCCcEEEecCcccccC
Confidence 699999999999864 234455543 46899999999999753
No 121
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=91.82 E-value=0.22 Score=49.58 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCcEEEeCcccc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~H~ 385 (487)
.+.++..+++.+.++++=||.-.
T Consensus 222 ~~~~~~Fl~~n~l~~iiR~He~~ 244 (293)
T cd07414 222 KDVVAKFLNKHDLDLICRAHQVV 244 (293)
T ss_pred HHHHHHHHHHcCCeEEEECCccc
Confidence 46788999999999999999854
No 122
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=91.51 E-value=0.23 Score=49.23 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=20.1
Q ss_pred HHHHHHHHHHcCCcEEEeCcccc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~H~ 385 (487)
.+.+++.+++.+.++++=||.-.
T Consensus 214 ~~~~~~Fl~~n~l~~iiR~He~~ 236 (285)
T cd07415 214 QDVVEEFNHNNGLTLICRAHQLV 236 (285)
T ss_pred HHHHHHHHHHCCCeEEEEcCccc
Confidence 46788999999999999999854
No 123
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=90.80 E-value=0.33 Score=48.51 Aligned_cols=23 Identities=4% Similarity=0.102 Sum_probs=20.0
Q ss_pred HHHHHHHHHHcCCcEEEeCcccc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~H~ 385 (487)
.+.+++.+++.+.++++=||.-.
T Consensus 215 ~~~~~~Fl~~n~l~~iiR~He~~ 237 (303)
T PTZ00239 215 AKVTKEFCRLNDLTLICRAHQLV 237 (303)
T ss_pred HHHHHHHHHHCCCcEEEEcChhh
Confidence 46888999999999999999854
No 124
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=90.77 E-value=0.41 Score=49.16 Aligned_cols=21 Identities=14% Similarity=0.210 Sum_probs=19.3
Q ss_pred HHHHHHHHHHcCCcEEEeCcc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHV 383 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~ 383 (487)
.+.++..|++++.++++=||.
T Consensus 273 ~~~~~~FL~~n~l~~IIRsHe 293 (377)
T cd07418 273 PDCTEEFLEKNNLKLIIRSHE 293 (377)
T ss_pred HHHHHHHHHHcCCcEEEECCC
Confidence 468889999999999999999
No 125
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=90.12 E-value=0.43 Score=48.02 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCCcEEEeCcccc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~H~ 385 (487)
.+.++..+++++.++++=||.-.
T Consensus 231 ~~~~~~Fl~~n~l~~IiR~Hq~v 253 (320)
T PTZ00480 231 QEIVQVFLKKHELDLICRAHQVV 253 (320)
T ss_pred HHHHHHHHHhCCCcEEEEcCccc
Confidence 57888999999999999999854
No 126
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=89.23 E-value=0.18 Score=50.16 Aligned_cols=23 Identities=17% Similarity=0.275 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCcEEEeCcccc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~H~ 385 (487)
.+.++..+++.+.++++=||.-.
T Consensus 224 ~~~~~~Fl~~n~l~~iiR~Hq~~ 246 (294)
T PTZ00244 224 EDIVNDFLDMVDMDLIVRAHQVM 246 (294)
T ss_pred HHHHHHHHHHcCCcEEEEcCccc
Confidence 46788999999999999999843
No 127
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=87.75 E-value=0.85 Score=45.90 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=19.9
Q ss_pred HHHHHHHHHHcCCcEEEeCcccc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~H~ 385 (487)
.+.+.+.+++.+.++++-||.=.
T Consensus 233 ~~~~~~Fl~~n~l~~iiR~He~~ 255 (316)
T cd07417 233 PDVTKRFLEENNLEYIIRSHEVK 255 (316)
T ss_pred HHHHHHHHHHcCCcEEEECCccc
Confidence 46778999999999999999853
No 128
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=87.52 E-value=1.1 Score=45.17 Aligned_cols=21 Identities=10% Similarity=0.189 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCCcEEEeCcc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHV 383 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~ 383 (487)
.+++...+++++.++++=||.
T Consensus 242 ~~~~~~Fl~~n~l~~iiRgHe 262 (311)
T cd07419 242 PDRVHRFLEENDLQMIIRAHE 262 (311)
T ss_pred HHHHHHHHHHCCCeEEEEech
Confidence 467889999999999999998
No 129
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=87.47 E-value=2.6 Score=48.63 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=53.1
Q ss_pred cCCCCCCCC-CceEEEeeccCCCcEEEEEEcCCCCCCCCCCCCCCCCCccEEEEeccCCCCceEEEEEEEEeeeecCCCC
Q 039280 41 NNAQGEGFQ-PEQIFVSLSARYDSVWISWITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQAEGYSLVYNQLYPPDG 119 (487)
Q Consensus 41 ~~~~~~~~~-P~qi~l~~~~~~~~~~V~W~T~~~~~~~~~~~~~~~~~~~~V~yg~~~~~~~~~~~g~~~~~~~~~~~~g 119 (487)
+...|.+.. |..|.|.... .++++|+|.+.....- .....-|.+.-.++........+ +. .|
T Consensus 609 ~Tlsd~PsaPP~Nl~lev~s-StsVrVsW~pP~~~t~----------ng~itgYkIRy~~~~~~~~~~~t-~v-----~~ 671 (1381)
T KOG4221|consen 609 RTLSDVPSAPPQNLSLEVVS-STSVRVSWLPPPSETQ----------NGQITGYKIRYRKLSREDEVNET-VV-----KG 671 (1381)
T ss_pred EeccCCCCCCCcceEEEecC-CCeEEEEccCCCcccc----------cceEEEEEEEecccCccccccee-ec-----cc
Confidence 444444444 4558887766 7899999988754210 11222233321111111111100 00 01
Q ss_pred CCccccCcEEEEEeCCCCCCCEEEEEEecCC---CCCcCceEEEEcCCC
Q 039280 120 LQNYTSGIIHHVLITGLQPNTLYEYECGDPS---ISAMSSSHYFRTMPV 165 (487)
Q Consensus 120 ~~~~~~~~~h~v~l~gL~P~T~Y~Y~vg~~~---~~~~s~~~~F~T~p~ 165 (487)
....-.+++|+|+|.|.+||.... .+..|++.+|.|+-.
T Consensus 672 -------n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~ 713 (1381)
T KOG4221|consen 672 -------NTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPES 713 (1381)
T ss_pred -------chhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccc
Confidence 111223578999999999995433 235778889988643
No 130
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=86.42 E-value=4.8 Score=44.82 Aligned_cols=38 Identities=32% Similarity=0.585 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCCCEEEEEEecCCC---CCcCceEEEEcCCC
Q 039280 128 IHHVLITGLQPNTLYEYECGDPSI---SAMSSSHYFRTMPV 165 (487)
Q Consensus 128 ~h~v~l~gL~P~T~Y~Y~vg~~~~---~~~s~~~~F~T~p~ 165 (487)
..+|+|+||+|+|+|.+||...+. +..|....|.|.+.
T Consensus 497 ~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~~~ 537 (996)
T KOG0196|consen 497 TTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTLPS 537 (996)
T ss_pred cceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeecCc
Confidence 357999999999999999965432 36788999999886
No 131
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=85.55 E-value=7.9 Score=29.27 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=18.4
Q ss_pred EEEEEeCCCCCCCEEEEEEecC
Q 039280 128 IHHVLITGLQPNTLYEYECGDP 149 (487)
Q Consensus 128 ~h~v~l~gL~P~T~Y~Y~vg~~ 149 (487)
...+.|.+|.|++.|.++|..-
T Consensus 56 ~~~~~i~~l~p~~~Y~~~v~a~ 77 (93)
T cd00063 56 ETSYTLTGLKPGTEYEFRVRAV 77 (93)
T ss_pred ccEEEEccccCCCEEEEEEEEE
Confidence 4578889999999999999653
No 132
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=83.22 E-value=8.8 Score=28.00 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=18.6
Q ss_pred EEEEEeCCCCCCCEEEEEEecC
Q 039280 128 IHHVLITGLQPNTLYEYECGDP 149 (487)
Q Consensus 128 ~h~v~l~gL~P~T~Y~Y~vg~~ 149 (487)
-+...|.+|+|++.|.++|..-
T Consensus 56 ~~~~~i~~L~~~~~Y~v~v~a~ 77 (83)
T smart00060 56 STSYTLTGLKPGTEYEFRVRAV 77 (83)
T ss_pred ccEEEEeCcCCCCEEEEEEEEE
Confidence 4678899999999999998643
No 133
>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3E0J_C 3FLO_G.
Probab=82.66 E-value=0.97 Score=42.36 Aligned_cols=83 Identities=12% Similarity=0.288 Sum_probs=42.6
Q ss_pred EEEEecCCCCCCh--HHHHHHHH-----HcCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhH---HHHHH
Q 039280 175 IAVVGDLGLTYNT--TTTVAHLM-----SNHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQP---RWDYW 244 (487)
Q Consensus 175 f~v~gD~~~~~~~--~~~l~~l~-----~~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~---~w~~~ 244 (487)
|++++|.+...+. .+.+.++. +.+|+.+|++|+++.......... .....+.. ....+
T Consensus 1 Iv~~Sg~~~~~~~~~~~~L~~~l~~~~~~~~p~~lIl~G~fi~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 68 (209)
T PF04042_consen 1 IVFASGPFLDSDNLSLEPLRDLLSGVEDASKPDVLILMGPFIDSPHPYISSG------------SVPDSYSFEEDFLKEL 68 (209)
T ss_dssp EEEEES--CTTT-HHHHHHHHHHHCCCHCTTECEEEEES-SCBTTSHHHHHT---------------HHCCHHHHHHHHC
T ss_pred CEEEecCccCCCHhHHHHHHHHHHhccccCCCcEEEEeCCCcCccccccccc------------cccccccccHHHHHHH
Confidence 5788999887432 23344443 457999999999996422110000 00001111 11233
Q ss_pred HHhhhccccCCCEEEecCCcccccC
Q 039280 245 GRYMQPLVSNVPTMVIEGEHEIERQ 269 (487)
Q Consensus 245 ~~~~~~l~~~~P~~~v~GNHD~~~~ 269 (487)
.+.+..+...++++.+||+||....
T Consensus 69 ~~~~~~i~~~~~vvlvPg~~D~~~~ 93 (209)
T PF04042_consen 69 DSFLESILPSTQVVLVPGPNDPTSS 93 (209)
T ss_dssp HHHHCCCHCCSEEEEE--TTCTT-S
T ss_pred HHHHhhcccccEEEEeCCCcccccc
Confidence 3445666678999999999998643
No 134
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.19 E-value=2.1 Score=37.69 Aligned_cols=42 Identities=24% Similarity=0.417 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCcEEEeCccccceecccccCCccCCCCcEEEEeCCcccc
Q 039280 364 VEMEDLLYYYGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDGGNV 413 (487)
Q Consensus 364 ~~l~~l~~~~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~gG~~ 413 (487)
+.|.-|-++..||+.++||+|.++-. .-+|-.||.-|++-..
T Consensus 97 ~sL~~LaRqldvDILl~G~Th~f~Ay--------e~eg~ffvnPGSaTGA 138 (183)
T KOG3325|consen 97 ESLALLARQLDVDILLTGHTHKFEAY--------EHEGKFFVNPGSATGA 138 (183)
T ss_pred HHHHHHHHhcCCcEEEeCCceeEEEE--------EeCCcEEeCCCcccCC
Confidence 45556667889999999999998877 3467788888887543
No 135
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=60.92 E-value=30 Score=39.02 Aligned_cols=125 Identities=19% Similarity=0.205 Sum_probs=71.8
Q ss_pred CCCCceEEEeeccC-CCcEEEEEEcCCCCCCCCCCCCCCCCCccEEEEeccCCCCceE-----EEEEE-EEeeeecCCCC
Q 039280 47 GFQPEQIFVSLSAR-YDSVWISWITGEFQIGDNISPLDPELVQSIVYFRVFRSSLTYQ-----AEGYS-LVYNQLYPPDG 119 (487)
Q Consensus 47 ~~~P~qi~l~~~~~-~~~~~V~W~T~~~~~~~~~~~~~~~~~~~~V~yg~~~~~~~~~-----~~g~~-~~~~~~~~~~g 119 (487)
...+.-++++.+.. .+++.++|....+. +. .....-.+.|...+.+.... +-|.. ......++.++
T Consensus 486 ~Ce~~~l~~~~~~~~~dsi~lrW~~~~~~-d~------r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~ 558 (1025)
T KOG4258|consen 486 ICEDLVLQFSSTVTSADSILLRWERYQPP-DM------RDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDL 558 (1025)
T ss_pred ecccceeeeeeEEeecceeEEEecccCCc-ch------hhhheeeEeeccCCccccceecCccccccCcceEEeccCCcC
Confidence 34677788888754 48999999887642 00 00112356677766332111 11111 11111122222
Q ss_pred CCccccCcEEEEEeCCCCCCCEEEEEEecCC-------CCCcCceEEEEcCCCCCCCCCCcEEEEEecCC
Q 039280 120 LQNYTSGIIHHVLITGLQPNTLYEYECGDPS-------ISAMSSSHYFRTMPVSGPSDYPNRIAVVGDLG 182 (487)
Q Consensus 120 ~~~~~~~~~h~v~l~gL~P~T~Y~Y~vg~~~-------~~~~s~~~~F~T~p~~~~~~~~~~f~v~gD~~ 182 (487)
..+ ++......|.||+|.|.|-|-|..-. ..+.|++..++|.|...+. |+.++.-++..
T Consensus 559 ~p~--~~~~~~~~l~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~Psp--Pl~~ls~snsS 624 (1025)
T KOG4258|consen 559 IPN--DGTHPGFLLDGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSP--PLDVLSKSNSS 624 (1025)
T ss_pred CCc--cccccceehhcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCC--cchhhhccCcc
Confidence 222 22333688999999999999885432 1278899999999876543 66666666654
No 136
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=60.09 E-value=60 Score=32.17 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=49.1
Q ss_pred CcEEEEEecCCCCCChHHHHHHHH---H---------cCCCEEEEcCccccccccccCCCccccccccCCCCcccchhhH
Q 039280 172 PNRIAVVGDLGLTYNTTTTVAHLM---S---------NHPDLLLLIGDLSYADLYLTNGTKSSCYLCQSIESPIQETYQP 239 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~~~~~l~~l~---~---------~~pdfvl~~GDl~y~d~~~~~g~~~~~~~~~~~~~~~~~~y~~ 239 (487)
..+|+++||++... .+++++|. + ..|-.+|+.|+++..-.. .+. ...+.|+.
T Consensus 27 ~~~~VilSDV~LD~--p~tl~~L~kvf~~y~~~~~~~~~P~~fVL~GnF~S~p~~--~~~------------~~~~~yk~ 90 (291)
T PTZ00235 27 RHNWIIMHDVYLDS--PYTFEVLDKMLSLYVNTYPENELPVGFIFMGDFISLKFD--YNR------------NFHKVYIK 90 (291)
T ss_pred ceEEEEEEeeccCC--HHHHHHHHHHHHHhhccCcccCCCeEEEEecCccCCccc--CCC------------CchHHHHH
Confidence 46899999998753 33444433 1 128899999999953211 010 11233555
Q ss_pred HHHHHHHh-h---hccccCCCEEEecCCcccc
Q 039280 240 RWDYWGRY-M---QPLVSNVPTMVIEGEHEIE 267 (487)
Q Consensus 240 ~w~~~~~~-~---~~l~~~~P~~~v~GNHD~~ 267 (487)
..+.+... + ..+..+.-++.|||-.|-.
T Consensus 91 ~Fd~La~llls~fp~L~~~s~fVFVPGpnDPw 122 (291)
T PTZ00235 91 GFEKLSVMLISKFKLILEHCYLIFIPGINDPC 122 (291)
T ss_pred HHHHHHHHHHHhChHHHhcCeEEEECCCCCCC
Confidence 56665542 2 2345677899999999974
No 137
>KOG4221 consensus Receptor mediating netrin-dependent axon guidance [Signal transduction mechanisms]
Probab=56.33 E-value=73 Score=37.53 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=27.9
Q ss_pred EEEEEeCCCCCCCEEEEEEecCCC---CCcCceEEEEcCC
Q 039280 128 IHHVLITGLQPNTLYEYECGDPSI---SAMSSSHYFRTMP 164 (487)
Q Consensus 128 ~h~v~l~gL~P~T~Y~Y~vg~~~~---~~~s~~~~F~T~p 164 (487)
.++.+|+||+|.|.|.|||...+. +..|....|+|+.
T Consensus 573 ~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tls 612 (1381)
T KOG4221|consen 573 ATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLS 612 (1381)
T ss_pred ccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEecc
Confidence 467889999999999999964432 2456677888864
No 138
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=50.74 E-value=1.2e+02 Score=35.44 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=18.5
Q ss_pred cEEEEEeCCCCCCCEEEEEEec
Q 039280 127 IIHHVLITGLQPNTLYEYECGD 148 (487)
Q Consensus 127 ~~h~v~l~gL~P~T~Y~Y~vg~ 148 (487)
..-.++|+||+|+|.|++.|..
T Consensus 875 ~~~~~~ltgL~~~T~Y~~~vrA 896 (1051)
T KOG3513|consen 875 NRTSWRLTGLEPNTKYRFYVRA 896 (1051)
T ss_pred CcceEeeeCCCCCceEEEEEEE
Confidence 4457899999999999998854
No 139
>KOG3947 consensus Phosphoesterases [General function prediction only]
Probab=50.47 E-value=27 Score=34.15 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=23.4
Q ss_pred CcEEEEEecCCCCCChHHHHHHHHHcCCCEEEEcCcccc
Q 039280 172 PNRIAVVGDLGLTYNTTTTVAHLMSNHPDLLLLIGDLSY 210 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~~~~~l~~l~~~~pdfvl~~GDl~y 210 (487)
-.||+.++|.|.-.... +. -..=|+++++||+..
T Consensus 61 ~~r~VcisdtH~~~~~i---~~--~p~gDvlihagdfT~ 94 (305)
T KOG3947|consen 61 YARFVCISDTHELTFDI---ND--IPDGDVLIHAGDFTN 94 (305)
T ss_pred ceEEEEecCcccccCcc---cc--CCCCceEEeccCCcc
Confidence 46999999998642211 11 124589999999984
No 140
>KOG0374 consensus Serine/threonine specific protein phosphatase PP1, catalytic subunit [Signal transduction mechanisms; General function prediction only]
Probab=47.81 E-value=19 Score=36.56 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCcEEEeCcccc
Q 039280 363 RVEMEDLLYYYGVDIVFNGHVHA 385 (487)
Q Consensus 363 r~~l~~l~~~~~VdlvlsGH~H~ 385 (487)
.+.+++++++.++|+++-+|.=.
T Consensus 233 ~~~v~~f~~~~~ldlivRaHqvv 255 (331)
T KOG0374|consen 233 PAVVEDFCKKLDLDLIVRAHQVV 255 (331)
T ss_pred HHHHHHHHHHhCcceEEEcCccc
Confidence 46788899999999999999643
No 141
>KOG0372 consensus Serine/threonine specific protein phosphatase involved in glycogen accumulation, PP2A-related [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=44.31 E-value=38 Score=32.61 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEecCCCCCChHHHHHHHHH--cCC-CEEEEcCcccc
Q 039280 175 IAVVGDLGLTYNTTTTVAHLMS--NHP-DLLLLIGDLSY 210 (487)
Q Consensus 175 f~v~gD~~~~~~~~~~l~~l~~--~~p-dfvl~~GDl~y 210 (487)
+.+.||+|.. ..+.++-..- .-| .=-|++||++.
T Consensus 45 vtvcGDIHGQ--f~Dllelf~igG~~~~t~YLFLGDyVD 81 (303)
T KOG0372|consen 45 VTVCGDIHGQ--FYDLLELFRIGGDVPETNYLFLGDYVD 81 (303)
T ss_pred cEEeecccch--HHHHHHHHHhCCCCCCCceEeecchhc
Confidence 5689999975 2333332221 122 24688999995
No 142
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=41.61 E-value=31 Score=30.76 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=22.6
Q ss_pred EEEEEeCCCCCCCEEEE--EEecCCCCCcCceEEEEcCCC
Q 039280 128 IHHVLITGLQPNTLYEY--ECGDPSISAMSSSHYFRTMPV 165 (487)
Q Consensus 128 ~h~v~l~gL~P~T~Y~Y--~vg~~~~~~~s~~~~F~T~p~ 165 (487)
+..-.+++|.|||+|+. .|..+.....|.+..-.|.|.
T Consensus 101 lsaYqVtNL~pGTkY~isY~VtkgtstESS~~i~msT~n~ 140 (184)
T PF07353_consen 101 LSAYQVTNLQPGTKYYISYLVTKGTSTESSNEIPMSTLNR 140 (184)
T ss_pred ceeEEeeccCCCcEEEEEEEEecCccceecceeccccccc
Confidence 34456789999999975 555443223334444555554
No 143
>KOG0373 consensus Serine/threonine specific protein phosphatase involved in cell cycle control, PP2A-related [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=37.71 E-value=45 Score=31.54 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=20.9
Q ss_pred EEEEecCCCCCChHHHHHHHHH--cCCC-EEEEcCccccc
Q 039280 175 IAVVGDLGLTYNTTTTVAHLMS--NHPD-LLLLIGDLSYA 211 (487)
Q Consensus 175 f~v~gD~~~~~~~~~~l~~l~~--~~pd-fvl~~GDl~y~ 211 (487)
+.+.||+|.. ..+.++-... .-|| --|+.||++..
T Consensus 48 VTvCGDIHGQ--FyDL~eLFrtgG~vP~tnYiFmGDfVDR 85 (306)
T KOG0373|consen 48 VTVCGDIHGQ--FYDLLELFRTGGQVPDTNYIFMGDFVDR 85 (306)
T ss_pred eeEeeccchh--HHHHHHHHHhcCCCCCcceEEecccccc
Confidence 5589999965 2333332222 2355 35789999953
No 144
>KOG0371 consensus Serine/threonine protein phosphatase 2A, catalytic subunit [Signal transduction mechanisms]
Probab=34.14 E-value=50 Score=32.06 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=22.0
Q ss_pred EEEEecCCCCCChHHHHHHHH--HcCCCE-EEEcCcccc
Q 039280 175 IAVVGDLGLTYNTTTTVAHLM--SNHPDL-LLLIGDLSY 210 (487)
Q Consensus 175 f~v~gD~~~~~~~~~~l~~l~--~~~pdf-vl~~GDl~y 210 (487)
+.+.||.|.. ....++-++ ...||. .++.||.+.
T Consensus 62 vtvcGDvHGq--f~dl~ELfkiGG~~pdtnylfmGDyvd 98 (319)
T KOG0371|consen 62 VTVCGDVHGQ--FHDLIELFKIGGLAPDTNYLFMGDYVD 98 (319)
T ss_pred eEEecCcchh--HHHHHHHHHccCCCCCcceeeeeeecc
Confidence 6789999975 333443332 235663 678999995
No 145
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=33.79 E-value=52 Score=27.66 Aligned_cols=22 Identities=36% Similarity=0.794 Sum_probs=19.8
Q ss_pred cEEEEEeCCCCCCCEEEEEEec
Q 039280 127 IIHHVLITGLQPNTLYEYECGD 148 (487)
Q Consensus 127 ~~h~v~l~gL~P~T~Y~Y~vg~ 148 (487)
-++++.|.++.+|+.|.|+|..
T Consensus 49 gvW~~~v~~~~~g~~Y~y~v~g 70 (119)
T cd02852 49 DVWHVFVEGLKPGQLYGYRVDG 70 (119)
T ss_pred CEEEEEECCCCCCCEEEEEECC
Confidence 5788999999999999999973
No 146
>KOG2476 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.64 E-value=1.2e+02 Score=31.92 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=27.2
Q ss_pred CcEEEEEecCCCCCChHHHHHHHHH-----cCCCEEEEcCcccc
Q 039280 172 PNRIAVVGDLGLTYNTTTTVAHLMS-----NHPDLLLLIGDLSY 210 (487)
Q Consensus 172 ~~~f~v~gD~~~~~~~~~~l~~l~~-----~~pdfvl~~GDl~y 210 (487)
+.||+++||... .....++++.+ ...|+++++|++.-
T Consensus 5 ~~kILv~Gd~~G--r~~eli~rI~~v~Kk~GpFd~liCvGnfF~ 46 (528)
T KOG2476|consen 5 DAKILVCGDVEG--RFDELIKRIQKVNKKSGPFDLLICVGNFFG 46 (528)
T ss_pred CceEEEEcCccc--cHHHHHHHHHHHhhcCCCceEEEEecccCC
Confidence 359999999864 34556666543 24899999999983
No 147
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=31.75 E-value=61 Score=26.49 Aligned_cols=22 Identities=14% Similarity=0.395 Sum_probs=19.5
Q ss_pred cEEEEEeCCCCCCCEEEEEEec
Q 039280 127 IIHHVLITGLQPNTLYEYECGD 148 (487)
Q Consensus 127 ~~h~v~l~gL~P~T~Y~Y~vg~ 148 (487)
-+.++.+.++.+|+.|.|+|..
T Consensus 45 GvW~~~v~~~~~g~~Y~y~i~g 66 (103)
T cd02856 45 GVWHGFLPGIKAGQRYGFRVHG 66 (103)
T ss_pred CEEEEEECCCCCCCEEEEEECC
Confidence 4778999999999999999964
No 148
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.21 E-value=63 Score=25.33 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=18.1
Q ss_pred cEEEEEeCCCCCCCEEEEEEec
Q 039280 127 IIHHVLITGLQPNTLYEYECGD 148 (487)
Q Consensus 127 ~~h~v~l~gL~P~T~Y~Y~vg~ 148 (487)
-++++.+.++ +|+.|.|+|..
T Consensus 40 G~W~~~v~~~-~g~~Y~y~v~~ 60 (85)
T cd02853 40 GWFEAEVPGA-AGTRYRYRLDD 60 (85)
T ss_pred cEEEEEeCCC-CCCeEEEEECC
Confidence 3678899999 99999999973
No 149
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=28.69 E-value=68 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.158 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCCCCEEEEEEecC
Q 039280 127 IIHHVLITGLQPNTLYEYECGDP 149 (487)
Q Consensus 127 ~~h~v~l~gL~P~T~Y~Y~vg~~ 149 (487)
-++++.+.++.+|+.|.|+|...
T Consensus 47 gvw~~~v~~~~~g~~Y~y~i~~~ 69 (100)
T cd02860 47 GVWSVTLDGDLEGYYYLYEVKVY 69 (100)
T ss_pred CEEEEEeCCccCCcEEEEEEEEe
Confidence 47889999999999999999643
No 150
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=26.87 E-value=57 Score=26.44 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=15.4
Q ss_pred EEEEeCCCCCCCEEEEEEec
Q 039280 129 HHVLITGLQPNTLYEYECGD 148 (487)
Q Consensus 129 h~v~l~gL~P~T~Y~Y~vg~ 148 (487)
-.++|.+|+|+|.|..+|..
T Consensus 67 ~~~~l~~L~p~t~YCv~V~~ 86 (106)
T PF09294_consen 67 SSVTLSDLKPGTNYCVSVQA 86 (106)
T ss_dssp EEEEEES--TTSEEEEEEEE
T ss_pred CEEEEeCCCCCCCEEEEEEE
Confidence 35689999999999999975
No 151
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=25.93 E-value=54 Score=30.94 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=19.6
Q ss_pred cCCcEEEeCccccceecccccCCccCCCCcEEEEeCCc
Q 039280 373 YGVDIVFNGHVHAYERSNRVYNYSLDPCGPVYILVGDG 410 (487)
Q Consensus 373 ~~VdlvlsGH~H~yeR~~p~~~~~~~~~g~vyIv~G~g 410 (487)
.+++++++||+|.-... ...+.+.|-+|+.
T Consensus 178 ~~~~~vv~GHTh~~~~~--------~~~~~i~IDtGs~ 207 (218)
T PRK09968 178 NGADYFIFGHMMFDNIQ--------TFANQIYIDTGSP 207 (218)
T ss_pred CCCCEEEECCCCcCcce--------eECCEEEEECCCC
Confidence 46789999999964322 1234677777763
No 152
>PHA01474 nonstructural protein
Probab=25.86 E-value=58 Score=22.09 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=18.7
Q ss_pred ceEEEeeccCCCcEEEEEEcCCC
Q 039280 51 EQIFVSLSARYDSVWISWITGEF 73 (487)
Q Consensus 51 ~qi~l~~~~~~~~~~V~W~T~~~ 73 (487)
.+|.|+..+.-.+.+|+|+|...
T Consensus 23 ariilspwnsfrsfriswrtetk 45 (52)
T PHA01474 23 ARIILSPWNSFRSFRISWRTETK 45 (52)
T ss_pred hheeeCccccceeEEEEEeeccc
Confidence 46888888767899999999753
No 153
>KOG3513 consensus Neural cell adhesion molecule L1 [Signal transduction mechanisms]
Probab=25.26 E-value=2.7e+02 Score=32.73 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=48.7
Q ss_pred CCCCCCceEEEeeccCCCcEEEEEEcCCCCCCCCCCCCCCCCCccEEEEec----cCCCCceEEEEEEEEeeeecCCCCC
Q 039280 45 GEGFQPEQIFVSLSARYDSVWISWITGEFQIGDNISPLDPELVQSIVYFRV----FRSSLTYQAEGYSLVYNQLYPPDGL 120 (487)
Q Consensus 45 ~~~~~P~qi~l~~~~~~~~~~V~W~T~~~~~~~~~~~~~~~~~~~~V~yg~----~~~~~~~~~~g~~~~~~~~~~~~g~ 120 (487)
|.+..|++|++.=.. ++++.++|.-.... ..++..|-. .....++.+. +. | +.
T Consensus 613 gpPgpP~~v~~~~i~-~t~~~lsW~~g~dn------------~SpI~~Y~iq~rt~~~~~W~~v~-~v-------p--~~ 669 (1051)
T KOG3513|consen 613 GPPGPPPDVHVDDIS-DTTARLSWSPGSDN------------NSPIEKYTIQFRTPFPGKWKAVT-TV-------P--GN 669 (1051)
T ss_pred cCCCCCCceeEeeec-cceEEEEeecCCCC------------CCCceEEeEEecCCCCCcceEee-EC-------C--Cc
Confidence 455678888886544 67999999887632 234555544 3222333332 11 1 11
Q ss_pred CccccCcEEEEEeCCCCCCCEEEEEEecCC
Q 039280 121 QNYTSGIIHHVLITGLQPNTLYEYECGDPS 150 (487)
Q Consensus 121 ~~~~~~~~h~v~l~gL~P~T~Y~Y~vg~~~ 150 (487)
..+. +.+++-+|.|-..|.+||...+
T Consensus 670 ---~~~~-~sa~vv~L~Pwv~YeFRV~AvN 695 (1051)
T KOG3513|consen 670 ---ITGD-ESATVVNLSPWVEYEFRVVAVN 695 (1051)
T ss_pred ---ccCc-cceeEEccCCCcceEEEEEEEc
Confidence 1233 5688889999999999996543
No 154
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=23.86 E-value=59 Score=32.43 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=15.2
Q ss_pred EEEeCCCCCCCEEEEEEe
Q 039280 130 HVLITGLQPNTLYEYECG 147 (487)
Q Consensus 130 ~v~l~gL~P~T~Y~Y~vg 147 (487)
.-+|.+|+|+|+||+-|-
T Consensus 16 ~~t~~~L~p~t~YyfdVF 33 (300)
T PF10179_consen 16 NQTLSGLKPDTTYYFDVF 33 (300)
T ss_pred eEEeccCCCCCeEEEEEE
Confidence 456789999999999884
No 155
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=22.40 E-value=1.4e+02 Score=24.55 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=22.1
Q ss_pred cEEEEEecCCCCCChHHHHHHHHHcCCCEEE
Q 039280 173 NRIAVVGDLGLTYNTTTTVAHLMSNHPDLLL 203 (487)
Q Consensus 173 ~~f~v~gD~~~~~~~~~~l~~l~~~~pdfvl 203 (487)
.||+.+||.+... .++..++.+.-|+-|.
T Consensus 65 ~kfiLIGDsgq~D--peiY~~ia~~~P~~i~ 93 (100)
T PF09949_consen 65 RKFILIGDSGQHD--PEIYAEIARRFPGRIL 93 (100)
T ss_pred CcEEEEeeCCCcC--HHHHHHHHHHCCCCEE
Confidence 6899999998764 5677788877777554
No 156
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=21.17 E-value=78 Score=31.01 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHcCCcE-EEeCcccc
Q 039280 362 MRVEMEDLLYYYGVDI-VFNGHVHA 385 (487)
Q Consensus 362 ~r~~l~~l~~~~~Vdl-vlsGH~H~ 385 (487)
+-+.+.+|+++++.|+ ||+||+-.
T Consensus 141 qp~~i~~Ll~~~~PDIlViTGHD~~ 165 (283)
T TIGR02855 141 MPEKVLDLIEEVRPDILVITGHDAY 165 (283)
T ss_pred chHHHHHHHHHhCCCEEEEeCchhh
Confidence 4578889999999995 69999854
No 157
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=21.14 E-value=95 Score=30.58 Aligned_cols=25 Identities=32% Similarity=0.284 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCcE-EEeCcccc
Q 039280 361 CMRVEMEDLLYYYGVDI-VFNGHVHA 385 (487)
Q Consensus 361 ~~r~~l~~l~~~~~Vdl-vlsGH~H~ 385 (487)
.+-+.+.+|+++++.|+ ||+||+=.
T Consensus 141 eqp~~i~~Ll~~~~PDIlViTGHD~~ 166 (287)
T PF05582_consen 141 EQPEKIYRLLEEYRPDILVITGHDGY 166 (287)
T ss_pred HhhHHHHHHHHHcCCCEEEEeCchhh
Confidence 45678889999999995 69999874
No 158
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=21.06 E-value=99 Score=30.85 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=17.3
Q ss_pred EEEeCCCCCCCEEEEEEecCC
Q 039280 130 HVLITGLQPNTLYEYECGDPS 150 (487)
Q Consensus 130 ~v~l~gL~P~T~Y~Y~vg~~~ 150 (487)
..+|.||+||+.|-..|....
T Consensus 261 tetI~~L~PG~~Yl~dV~~~~ 281 (300)
T PF10179_consen 261 TETIKGLKPGTTYLFDVYVNG 281 (300)
T ss_pred eeecccCCCCcEEEEEEEEec
Confidence 447999999999988887654
Done!