BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039281
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=VTE2-1 PE=2 SV=1
Length = 393
Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 94/133 (70%)
Query: 23 VQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVF 82
+Q +V GRP+ TR L+FAT F+ F + A KD+ D++GDK FGI + SV LG++RVF
Sbjct: 256 IQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVF 315
Query: 83 WLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFY 142
W CV +L +AY A++VGA+S + SK+++++ H ILA++LW RA++VDLSS T S Y
Sbjct: 316 WTCVTLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCY 375
Query: 143 MFIWKASDCTYIL 155
MFIWK Y+L
Sbjct: 376 MFIWKLFYAEYLL 388
>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT1 PE=2 SV=1
Length = 404
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/186 (39%), Positives = 108/186 (58%), Gaps = 34/186 (18%)
Query: 4 SPPLVLGVIVWFLFGTAYSV----------------------------------QKYVLG 29
S PL L + + F+ GTAYS+ Q +V
Sbjct: 214 SQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLHIQTFVFR 273
Query: 30 RPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYML 89
RP TR L+FAT F+ F + A KD+ D++GD+ FGI++ SV+LG+++VFW+CV +L
Sbjct: 274 RPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVFWICVGLL 333
Query: 90 SIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIWKAS 149
+AY A+++GA+S+ L SK T++ H ILA+ LW R+R++DL+S T+ SFYMFIWK
Sbjct: 334 EMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFYMFIWKLF 393
Query: 150 DCTYIL 155
Y+L
Sbjct: 394 YAEYLL 399
>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora
flavescens GN=N8DT-1 PE=1 SV=1
Length = 410
Score = 136 bits (342), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 90/133 (67%)
Query: 23 VQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVF 82
+Q V RP R L+F T + + I A KD+ D++GD++FGI++LS++LG +RVF
Sbjct: 273 MQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVF 332
Query: 83 WLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFY 142
W+CV +L + YG ++VGA+S IL SK++T++ H +LAS LW A++VDL+SN SFY
Sbjct: 333 WICVSLLEMTYGVTILVGATSPILWSKIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFY 392
Query: 143 MFIWKASDCTYIL 155
MFIWK Y L
Sbjct: 393 MFIWKLHTAEYFL 405
>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1
SV=1
Length = 409
Score = 123 bits (309), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 84/127 (66%)
Query: 21 YSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKER 80
+ +Q VL RP+ RSL F F+ + + A KD+ DV+GDKE GI++ +V+LG++R
Sbjct: 270 HHMQTVVLKRPIGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKR 329
Query: 81 VFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFS 140
FW+CV +A+G ++ GAS S +K+ T + + +LAS LW +A++VDLS ST S
Sbjct: 330 AFWICVSFFEMAFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGS 389
Query: 141 FYMFIWK 147
FYMFIWK
Sbjct: 390 FYMFIWK 396
>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis
thaliana GN=HPT2 PE=2 SV=1
Length = 386
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 5/153 (3%)
Query: 7 LVLGVIVWFL--FGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGD 64
L++ + FL FG Y + LG P + + + F T F+ F + A KDL DV+GD
Sbjct: 231 LIIATVRGFLLNFGV-YHATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGD 289
Query: 65 KEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLW 124
++F I TL+ KLG + +L +L + Y +A+ + + L I +H ILAS L
Sbjct: 290 RKFQISTLATKLGVRNIAFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLI 349
Query: 125 LRARTVDLSSNTSTF--SFYMFIWKASDCTYIL 155
+ ++ ++ T +Y FIW Y+L
Sbjct: 350 FQTWVLEKANYTKEAISGYYRFIWNLFYAEYLL 382
>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=HPT2 PE=3 SV=2
Length = 379
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 5/153 (3%)
Query: 7 LVLGVIVWFL--FGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGD 64
L++ + FL FG Y+ + LG + + + F T F+ F + A KDL DV+GD
Sbjct: 224 LIIATVRGFLLNFGVYYATRA-ALGLTFQWSSPVAFITCFVTLFALVIAITKDLPDVEGD 282
Query: 65 KEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLW 124
+++ I TL+ KLG + +L +L Y AA+ V + + + H LA +
Sbjct: 283 RKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFLMPQAFRRTVMVPVHAALAVGII 342
Query: 125 LRARTVDLSSNT--STFSFYMFIWKASDCTYIL 155
+ ++ + T + +Y FIW YI
Sbjct: 343 FQTWVLEQAKYTKDAISQYYRFIWNLFYAEYIF 375
>sp|Q4J8K2|DGGGP_SULAC Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus
acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 /
NBRC 15157 / NCIMB 11770) GN=Saci_1565 PE=3 SV=1
Length = 275
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 37 SLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSI 91
+ + T++I F ++ F+K + D++GDK G+ TL+VKLG++ + + +L I
Sbjct: 155 NFIIPTIYIFFFTLSREFVKGIEDIEGDKRNGVNTLAVKLGEKSTWIIAKIILGI 209
>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG
PE=2 SV=1
Length = 387
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 4 SPPLVLGVIVW---FLFGTAYSVQKYVLGRPV--EITRSLMFATVFICCFCIASAFLKDL 58
+PPL L W F G +Y + G+ + +T ++ T+ + A + D
Sbjct: 227 APPLKLKQNGWVGNFALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDF 286
Query: 59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSI 91
V+GD+ G+++L V G E W+CV + I
Sbjct: 287 KSVEGDRALGLQSLPVAFGTETAKWICVGAIDI 319
>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1
SV=1
Length = 378
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 19/100 (19%)
Query: 4 SPPLVLGVIVW---FLFGTAYSVQKYVLGRPVEITRSLMFAT------VFICCFCIAS-- 52
+PPL L W F G +Y +G P ++L F T V C + IA
Sbjct: 218 APPLKLKQNGWIGNFALGASY------IGLPWWAGQAL-FGTLTPDIVVLTCLYSIAGLG 270
Query: 53 -AFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSI 91
A + D ++GD+ G+++L V G E W+CV + I
Sbjct: 271 IAIVNDFKSIEGDRTLGLQSLPVAFGMETAKWICVGAIDI 310
>sp|Q971A3|DGGGP_SULTO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)
GN=STK_14510 PE=3 SV=1
Length = 278
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSI 91
+ R+L+ T++I F + F+K + DV GD G++TL+V++G E+ +++ +L I
Sbjct: 156 VIRTLI-PTLYIFFFTLTREFVKGIEDVKGDMTNGVKTLAVRVGIEKTWFISKIILVI 212
>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica
GN=CHLG PE=2 SV=1
Length = 376
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Query: 4 SPPLVLGVIVW---FLFGTAYSVQKYVLGRPV--EITRSLMFATVFICCFCIASAFLKDL 58
+PPL L W F G +Y + G+ + +T ++ T + A + D
Sbjct: 216 APPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTSLYSIAGLGIAIVNDF 275
Query: 59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSI 91
V+GD+ G+++L V G E W+CV + I
Sbjct: 276 KSVEGDRALGLQSLPVAFGMETAKWICVGAIDI 308
>sp|Q3INH7|DGGGP_NATPD Digeranylgeranylglyceryl phosphate synthase OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=NP_4470A
PE=3 SV=1
Length = 277
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 46 CCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFW 83
C +A +KD+ D+DGD+ G+ TL + +G+ R +
Sbjct: 165 ACATMAREIVKDVEDIDGDRAEGLRTLPIVIGERRSLY 202
>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum
walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1
Length = 286
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 48/98 (48%), Gaps = 2/98 (2%)
Query: 1 MLRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHD 60
+ + P V IV +L G+ + +GR + ++F + +KD+ D
Sbjct: 129 LFKGLPGVGNAIVAYLTGSTFLFGAAAIGRITDFGVVVLF--ILAALATATREIIKDIED 186
Query: 61 VDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVV 98
+DGD++ G++TL + +G + + +L +A A++V
Sbjct: 187 LDGDRKEGLQTLPIVIGVTPAYRVATGVLLVAVIASIV 224
>sp|Q9V2P5|DGGGP_PYRAB Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB00300 PE=3 SV=2
Length = 277
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 13/100 (13%)
Query: 45 ICCFCI--ASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGAS 102
IC F + + +KD+ D++GD + G +TL + +GK R M+S +G V+
Sbjct: 161 ICAFLVNVSREIMKDIEDIEGDMKMGAKTLPIIIGKRR-----AAMISSIFGVLTVI--- 212
Query: 103 SSILLSKLLTIISHC--ILASSLWLRARTVDLSSNTSTFS 140
+S L K+ + + IL ++ L+A ++D+ N + S
Sbjct: 213 TSFLPVKVGIGLGYAPIILVDAMILKA-SIDVVKNPESAS 251
>sp|C5A1J7|DGGGP_THEGJ Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
gammatolerans (strain DSM 15229 / JCM 11827 / EJ3)
GN=TGAM_1764 PE=3 SV=1
Length = 276
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 41 ATVFICCFCI--ASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVV 98
T+ +C F + A +KD+ DV+GD + G +TL + LG+ + ++ + +G A V
Sbjct: 157 GTLAVCAFLVNVAREIVKDIEDVEGDLKKGAKTLPIILGRRKAAYVAAF-----FGVATV 211
Query: 99 V 99
+
Sbjct: 212 I 212
>sp|A6UVU6|DGGGP_META3 Digeranylgeranylglyceryl phosphate synthase OS=Methanococcus
aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=Maeo_1040
PE=3 SV=1
Length = 279
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 11 VIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIE 70
+IV +L G+ + +G VEIT L +F + +KD D+DGDK G+
Sbjct: 135 LIVAYLTGSIFIFGGASVGN-VEITLILFLCALFATW---SREIIKDYEDLDGDKSEGVI 190
Query: 71 TLSVKLGKERV-----FWLCVYMLS 90
+L +K GK + F LC +LS
Sbjct: 191 SLPIKYGKNSIFVAIGFLLCSILLS 215
>sp|Q8TWS9|DGGGP_METKA Digeranylgeranylglyceryl phosphate synthase OS=Methanopyrus
kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC
100938) GN=MK0953 PE=3 SV=1
Length = 271
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 2 LRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDV 61
L+ PL+ V+V +L G+ + V RP ++ + + LKDL DV
Sbjct: 120 LKGTPLIGNVMVSYLVGSCFLFGAAVGQRPAPA----VWLFLLAFLANLVREILKDLEDV 175
Query: 62 DGDKEFGIETLSVKLGK 78
+GD G++TL + G+
Sbjct: 176 EGDAALGLKTLPIAYGE 192
>sp|O57753|DGGGP_PYRHO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 /
NBRC 100139 / OT-3) GN=PH0027 PE=3 SV=1
Length = 277
Score = 36.2 bits (82), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 45 ICCFCI--ASAFLKDLHDVDGDKEFGIETLSVKLGKER 80
IC F + + +KD+ D +GDK G TL + +GK++
Sbjct: 161 ICAFLVNVSREIMKDIEDFEGDKRLGARTLPIMIGKKK 198
>sp|Q46BD9|DGGGP_METBF Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
barkeri (strain Fusaro / DSM 804) GN=Mbar_A1863 PE=3
SV=1
Length = 289
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 2 LRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDV 61
L+ PL+ + + +L G+++ V G +E ++L + A +KD+ D+
Sbjct: 138 LKGTPLLGNLSIGYLTGSSFLFGASVFG--LEGLKALFVLFLLAALAITAREIVKDIEDM 195
Query: 62 DGDKEFGIETLSVKLGKERVFWLC 85
+GDK G +TL +++G ++ +L
Sbjct: 196 EGDKMEGADTLPLRVGAKKASYLA 219
>sp|A7I9E7|DGGGP_METB6 Digeranylgeranylglyceryl phosphate synthase OS=Methanoregula boonei
(strain 6A8) GN=Mboo_1843 PE=3 SV=1
Length = 279
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 15 FLFGTAYSVQKYVLGR-PVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLS 73
FLFG AY+ +L P+ A F+ +A LKD D++GD+ G +TL+
Sbjct: 141 FLFGGAYAGWHALLDMLPIA-------AITFLAM--LARELLKDAEDIEGDRAHGADTLA 191
Query: 74 VKLGKER 80
+++G +
Sbjct: 192 IRIGVRK 198
>sp|B6YW76|DGGGP_THEON Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
onnurineus (strain NA1) GN=TON_1950 PE=3 SV=1
Length = 276
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 45 ICCFCI--ASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCV 86
IC F + A +KD+ DV+GD G +TL + GK+R ++ V
Sbjct: 161 ICAFLVNVAREVIKDIEDVEGDMAKGAKTLPIIWGKKRAAYVGV 204
>sp|Q8TZM7|DGGGP_PYRFU Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1963 PE=3 SV=1
Length = 277
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 45 ICCFCI--ASAFLKDLHDVDGDKEFGIETLSVKLGKER 80
IC F + + +KD+ D++GDK G TL + +G+++
Sbjct: 161 ICAFLVNVSREIMKDIEDIEGDKALGARTLPIIIGEKK 198
>sp|Q5JDN5|DGGGP_PYRKO Digeranylgeranylglyceryl phosphate synthase OS=Pyrococcus
kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
GN=TK1957 PE=3 SV=1
Length = 277
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 41 ATVFICCFCI--ASAFLKDLHDVDGDKEFGIETLSVKLGKER 80
T+ +C F + A +KD+ D++GD G +TL + +G++R
Sbjct: 157 GTLALCAFLVNVAREVIKDIEDIEGDMAKGAKTLPILIGRKR 198
>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum
cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1
Length = 281
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 54 FLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIA 92
F+K + D+ GD+ G+ T++V++G +R + V++LS+A
Sbjct: 172 FVKAVEDLPGDRAHGVRTIAVRIGVKRT-GILVFLLSLA 209
>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
GN=Memar_1697 PE=3 SV=1
Length = 279
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 8/66 (12%)
Query: 15 FLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSV 74
FLFG A++ + + R+L A + IA LKD DVDGD G TL +
Sbjct: 141 FLFGGAFAGIE-------GLVRNLSLAAITFLA-TIARELLKDAEDVDGDAAGGARTLPM 192
Query: 75 KLGKER 80
+G +
Sbjct: 193 IVGVRK 198
>sp|A5ULR8|DGGGP_METS3 Digeranylgeranylglyceryl phosphate synthase OS=Methanobrevibacter
smithii (strain PS / ATCC 35061 / DSM 861) GN=Msm_0941
PE=3 SV=1
Length = 283
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 2 LRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDV 61
L+S PL+ + V F+ G + Y + I S + A F A KD+ D+
Sbjct: 124 LKSTPLIGNLTVGFMTGLCFIFAGYTFNEGLIIYESYLLA-FFALIMTTAREITKDIEDM 182
Query: 62 DGDKEFGIETLSVKLGKE 79
+GD G +T + G +
Sbjct: 183 EGDMAEGAKTFPILYGPK 200
>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3
SV=1
Length = 267
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 2 LRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDV 61
L+ P+ + + +L GT + P IT F ++ ++ +KD+ D+
Sbjct: 121 LKGLPVAGNIAISYLTGTTFLFGGLA-ASPSSITA---FLSILSALATLSREIVKDIEDL 176
Query: 62 DGDKEFGIETLSVKLGKERVFWLCVYMLSIA 92
GD G +TL +GK + F L +L +A
Sbjct: 177 PGDLAHGAKTLPAFIGKRKSFVLASLVLIVA 207
>sp|Q8TS44|DGGGP_METAC Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina
acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 /
C2A) GN=MA_0961 PE=3 SV=1
Length = 289
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Query: 2 LRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDV 61
L+ PL+ + + +L G+ + V G +E ++L + A +KD+ D+
Sbjct: 138 LKGTPLLGNLSIGYLTGSVFLFGASVFG--LEGLKTLFVLFLLAALAITAREIVKDIEDM 195
Query: 62 DGDKEFGIETLSVKLGKERVFWLCV 86
+GD+ +TL +++G ++ +L V
Sbjct: 196 EGDRLEDADTLPLRIGAKKAGYLAV 220
>sp|Q8PV96|DGGGP_METMA Digeranylgeranylglyceryl phosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_2075 PE=3 SV=2
Length = 289
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 2/85 (2%)
Query: 2 LRSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDV 61
L+ PL+ + + +L G+ + + G S++F + A +KD+ D+
Sbjct: 138 LKGTPLLGNLSIGYLTGSVFLFGASIFGFGGIKALSVLF--LLAALAITAREIVKDIEDM 195
Query: 62 DGDKEFGIETLSVKLGKERVFWLCV 86
+GD G +TL +++G ++ +L V
Sbjct: 196 EGDSLEGADTLPLRIGAKKAGYLAV 220
>sp|Q57727|DGGGP_METJA Digeranylgeranylglyceryl phosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0279 PE=3 SV=1
Length = 283
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 55 LKDLHDVDGDKEFGIETLSVKLGKERVFW 83
+KD D++GDK+ G+ +L +K GK+ +++
Sbjct: 178 VKDFEDMEGDKKEGVISLPIKYGKKSLYF 206
>sp|O27170|DGGGP_METTH Digeranylgeranylglyceryl phosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1098 PE=1 SV=1
Length = 281
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 7 LVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKE 66
LV + + FL G ++ VLG E+ S++ + +A +KD+ DV+GD+
Sbjct: 124 LVGNITISFLTGLSFVFGGIVLG---EVRASILLG-FYAFLMTMAREIVKDMEDVEGDRA 179
Query: 67 FGIETLSVKLG 77
G TL + G
Sbjct: 180 EGATTLPITHG 190
>sp|A2SRL0|DGGGP_METLZ Digeranylgeranylglyceryl phosphate synthase OS=Methanocorpusculum
labreanum (strain ATCC 43576 / DSM 4855 / Z)
GN=Mlab_0795 PE=3 SV=1
Length = 282
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Query: 3 RSPPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVD 62
+ P + + V +L G+ + +++G + +FA F +A LKD D++
Sbjct: 123 KGIPFLGNLSVAYLSGSIFLFGGFLVGPESFLVMLPLFAITFFGT--LARELLKDAEDIE 180
Query: 63 GDKEFGIETLSVKLGKER 80
GD+ G TL +++G +
Sbjct: 181 GDRLGGARTLPMQIGVRK 198
>sp|P75958|LOLE_ECOLI Lipoprotein-releasing system transmembrane protein LolE
OS=Escherichia coli (strain K12) GN=lolE PE=1 SV=3
Length = 414
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 30 RPVEITRSLMFAT----VFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLC 85
R +++ R++M+ + + CF I S + + D GD + TL K G R ++
Sbjct: 263 RDIQMIRAIMYLAMVLVIGVACFNIVSTLVMAVKDKSGDIAV-LRTLGAKDGLIRAIFVW 321
Query: 86 VYMLSIAYGA--AVVVGASSSILLSKLLT----IISHCILASSLW 124
+L+ +G+ V++G S+ L+ ++ +I H L+S ++
Sbjct: 322 YGLLAGLFGSLCGVIIGVVVSLQLTPIIEWIEKLIGHQFLSSDIY 366
>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides
burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1
Length = 281
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 49 CIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLC 85
IA +KD+ D+ GDK+ G TL + +G ++ ++
Sbjct: 175 TIAREIVKDVEDIVGDKKDGARTLPILIGAKKASYIA 211
>sp|Q9HRP0|DGGGP_HALSA Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=VNG_0610G PE=3 SV=2
Length = 276
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 51 ASAFLKDLHDVDGDKEFGIETLSVKLGKERVF 82
A +KD+ D+ GD+ G+ TL V +G +R
Sbjct: 170 AREVIKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|B0R3S1|DGGGP_HALS3 Digeranylgeranylglyceryl phosphate synthase OS=Halobacterium
salinarum (strain ATCC 29341 / DSM 671 / R1) GN=OE_1921R
PE=3 SV=1
Length = 276
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 51 ASAFLKDLHDVDGDKEFGIETLSVKLGKERVF 82
A +KD+ D+ GD+ G+ TL V +G +R
Sbjct: 170 AREVIKDVEDLAGDRAAGLRTLPVVVGHQRAL 201
>sp|C6A2C9|DGGGP_THESM Digeranylgeranylglyceryl phosphate synthase OS=Thermococcus
sibiricus (strain MM 739 / DSM 12597) GN=TSIB_0711 PE=3
SV=1
Length = 279
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 45 ICCFCI--ASAFLKDLHDVDGDKEFGIETLSVKLGKE 79
+C F + A KD+ D++GDK G +TL + G E
Sbjct: 161 LCAFLVNVAREIFKDIEDIEGDKAQGAKTLPIVWGIE 197
>sp|Q12S01|UBIA_SHEDO 4-hydroxybenzoate octaprenyltransferase OS=Shewanella denitrificans
(strain OS217 / ATCC BAA-1090 / DSM 15013) GN=ubiA PE=3
SV=2
Length = 293
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 5 PPLVLGVIVWFLFGTAYSVQKYVLGR-PVEITRSLMFATVFICCFCIASAFLKDLHDVDG 63
P + LG++ + AY+ Q LG PVE +FA + C+ +A + + D D
Sbjct: 145 PQMFLGIVWSWSIPMAYAAQ---LGEVPVEAW--WLFAANW--CWTVAYDTMYAMIDRDD 197
Query: 64 DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSS 104
D + GI++ ++ G+ W+ V+ L +A+G ++ G S+
Sbjct: 198 DLKVGIKSSAILFGRFDRQWIAVFQL-MAFGCFLMAGLSAE 237
>sp|Q61098|IL18R_MOUSE Interleukin-18 receptor 1 OS=Mus musculus GN=Il18r1 PE=2 SV=1
Length = 537
Score = 30.8 bits (68), Expect = 4.1, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 53 AFLKDLHDVDGDK-EFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLL 111
++LK+ H + ++ F +ETL L K+ + LC++ + G AVV S I S+ L
Sbjct: 377 SYLKECHPENKEEYTFAVETLPRVLEKQFGYKLCIFERDVVPGGAVVEEIHSLIEKSRRL 436
Query: 112 TII 114
I+
Sbjct: 437 IIV 439
>sp|A2BIU7|DGGGP_HYPBU Digeranylgeranylglyceryl phosphate synthase OS=Hyperthermus
butylicus (strain DSM 5456 / JCM 9403) GN=Hbut_0025 PE=3
SV=1
Length = 302
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 48 FCIASAFLKDLHDVDGDKEFGIETLSVKLG 77
+ F+K + DV GD GI TL+V+ G
Sbjct: 185 LVLGREFVKGIEDVKGDAIAGIGTLAVRFG 214
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.139 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,427,723
Number of Sequences: 539616
Number of extensions: 1759343
Number of successful extensions: 4916
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 4885
Number of HSP's gapped (non-prelim): 49
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 56 (26.2 bits)