Query 039281
Match_columns 165
No_of_seqs 174 out of 320
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 08:08:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 3.7E-51 8E-56 350.3 18.8 158 2-159 88-279 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 1.3E-44 2.8E-49 311.9 20.1 160 3-162 118-308 (308)
3 PRK13105 ubiA prenyltransferas 99.6 4.4E-15 9.6E-20 127.6 15.3 98 3-100 103-224 (282)
4 PRK06080 1,4-dihydroxy-2-napht 99.6 2.3E-14 4.9E-19 121.6 17.1 100 4-103 112-235 (293)
5 TIGR02235 menA_cyano-plnt 1,4- 99.6 1.9E-14 4.2E-19 123.4 16.5 147 3-153 104-282 (285)
6 PRK12872 ubiA prenyltransferas 99.6 2E-14 4.3E-19 120.9 15.7 107 3-109 102-234 (285)
7 PRK07419 1,4-dihydroxy-2-napht 99.6 3E-14 6.6E-19 123.4 15.8 149 3-155 117-297 (304)
8 PRK05951 ubiA prenyltransferas 99.6 6.6E-14 1.4E-18 120.0 16.9 141 3-144 114-278 (296)
9 TIGR01476 chlor_syn_BchG bacte 99.6 3.4E-14 7.4E-19 120.3 14.6 151 3-157 104-278 (283)
10 TIGR00751 menA 1,4-dihydroxy-2 99.6 9.1E-14 2E-18 119.2 16.3 99 6-104 110-232 (284)
11 PRK13387 1,4-dihydroxy-2-napht 99.6 1.9E-13 4E-18 118.8 17.2 101 3-103 112-256 (317)
12 PRK13591 ubiA prenyltransferas 99.6 2.4E-14 5.2E-19 124.8 11.4 86 50-135 193-278 (307)
13 PLN02922 prenyltransferase 99.6 3E-13 6.5E-18 117.7 17.4 104 3-106 121-258 (315)
14 TIGR02056 ChlG chlorophyll syn 99.5 3.2E-13 6.9E-18 116.4 16.4 145 4-153 127-296 (306)
15 COG0382 UbiA 4-hydroxybenzoate 99.5 3E-12 6.6E-17 108.8 18.5 149 7-158 118-286 (289)
16 PRK12392 bacteriochlorophyll c 99.5 4.8E-13 1E-17 117.2 13.3 101 4-104 124-248 (331)
17 TIGR01475 ubiA_other putative 99.5 6.6E-12 1.4E-16 106.5 17.6 101 36-139 158-258 (282)
18 PRK12884 ubiA prenyltransferas 99.5 6.6E-12 1.4E-16 105.7 17.3 100 4-103 103-222 (279)
19 PRK07566 bacteriochlorophyll/c 99.4 2.6E-12 5.6E-17 111.2 14.9 95 4-98 131-251 (314)
20 PF01040 UbiA: UbiA prenyltran 99.4 1.6E-11 3.5E-16 99.7 17.3 80 4-83 91-193 (257)
21 PLN00012 chlorophyll synthetas 99.4 1.1E-11 2.3E-16 110.5 17.1 146 4-153 196-365 (375)
22 COG1575 MenA 1,4-dihydroxy-2-n 99.4 8E-12 1.7E-16 108.8 14.4 149 3-155 119-298 (303)
23 PRK12847 ubiA 4-hydroxybenzoat 99.4 1.8E-11 4E-16 104.0 15.1 131 4-138 113-263 (285)
24 PRK13595 ubiA prenyltransferas 99.4 7.2E-12 1.6E-16 108.6 12.8 89 4-97 117-230 (292)
25 PLN02809 4-hydroxybenzoate non 99.4 2.4E-11 5.1E-16 104.6 15.0 95 48-146 178-273 (289)
26 PRK12882 ubiA prenyltransferas 99.4 5.3E-11 1.2E-15 100.5 16.2 98 39-138 160-257 (276)
27 PRK12888 ubiA prenyltransferas 99.3 6.8E-11 1.5E-15 101.4 16.7 106 34-142 157-263 (284)
28 PRK09573 (S)-2,3-di-O-geranylg 99.3 4.8E-10 1E-14 95.0 17.3 93 5-97 104-215 (279)
29 TIGR01474 ubiA_proteo 4-hydrox 99.3 2.5E-10 5.4E-15 97.3 15.4 133 4-140 108-260 (281)
30 PRK12895 ubiA prenyltransferas 99.2 3.3E-10 7.1E-15 97.7 15.4 101 38-142 161-262 (286)
31 PRK12871 ubiA prenyltransferas 99.2 3.3E-10 7.1E-15 97.9 14.8 130 5-138 123-273 (297)
32 PRK13106 ubiA prenyltransferas 99.2 4.1E-10 8.8E-15 97.6 15.4 106 37-147 178-283 (300)
33 PRK12883 ubiA prenyltransferas 99.2 8.2E-10 1.8E-14 93.3 15.0 85 4-89 103-207 (277)
34 PRK12875 ubiA prenyltransferas 99.2 4.3E-10 9.4E-15 96.6 12.6 65 34-100 165-229 (282)
35 PRK12878 ubiA 4-hydroxybenzoat 99.1 2E-09 4.3E-14 93.6 14.9 142 4-151 140-301 (314)
36 PRK12870 ubiA 4-hydroxybenzoat 99.1 2.2E-09 4.7E-14 92.2 14.8 111 33-147 163-276 (290)
37 PRK12886 ubiA prenyltransferas 99.1 3.7E-09 7.9E-14 90.9 15.6 98 34-134 160-257 (291)
38 PRK12876 ubiA prenyltransferas 99.1 7.6E-09 1.7E-13 90.1 17.2 103 40-142 176-278 (300)
39 PRK12874 ubiA prenyltransferas 99.0 1.6E-08 3.5E-13 87.0 16.8 104 34-140 165-268 (291)
40 PRK12848 ubiA 4-hydroxybenzoat 99.0 9.5E-09 2.1E-13 87.5 15.0 109 34-146 160-269 (282)
41 PRK12869 ubiA protoheme IX far 98.8 2.2E-07 4.8E-12 79.2 15.1 59 33-91 156-214 (279)
42 TIGR01473 cyoE_ctaB protoheme 98.7 9.9E-07 2.1E-11 74.8 15.8 100 52-160 172-274 (280)
43 PRK13592 ubiA prenyltransferas 98.7 3.5E-07 7.7E-12 79.9 12.2 55 39-95 178-232 (299)
44 PRK12873 ubiA prenyltransferas 98.6 1.4E-06 3E-11 75.7 14.8 105 39-147 173-280 (294)
45 PRK04375 protoheme IX farnesyl 98.3 1.3E-05 2.8E-10 68.9 12.4 64 34-97 165-228 (296)
46 PRK13362 protoheme IX farnesyl 98.0 0.00035 7.5E-09 60.8 15.3 53 33-85 167-219 (306)
47 KOG4581 Predicted membrane pro 97.3 0.00084 1.8E-08 58.1 7.0 63 47-109 240-302 (359)
48 TIGR02056 ChlG chlorophyll syn 94.6 0.79 1.7E-05 39.7 11.9 58 40-97 58-117 (306)
49 PRK12884 ubiA prenyltransferas 94.2 1.6 3.5E-05 36.7 12.6 51 41-92 42-95 (279)
50 COG0382 UbiA 4-hydroxybenzoate 93.8 0.88 1.9E-05 38.8 10.4 33 37-69 48-80 (289)
51 PRK13595 ubiA prenyltransferas 93.5 1.5 3.3E-05 38.5 11.5 74 13-93 29-106 (292)
52 TIGR01476 chlor_syn_BchG bacte 91.5 1.8 3.9E-05 36.7 9.2 48 44-92 46-96 (283)
53 PRK12882 ubiA prenyltransferas 91.5 7 0.00015 33.0 12.8 48 45-93 47-97 (276)
54 PRK12887 ubiA tocopherol phyty 90.5 2.1 4.5E-05 37.3 8.9 32 55-87 72-106 (308)
55 PRK12872 ubiA prenyltransferas 89.7 5.5 0.00012 33.4 10.6 29 41-69 41-69 (285)
56 PRK12847 ubiA 4-hydroxybenzoat 89.6 4.1 8.9E-05 34.7 9.8 81 6-91 20-104 (285)
57 PF01040 UbiA: UbiA prenyltran 89.5 4.4 9.5E-05 32.7 9.5 22 46-67 33-54 (257)
58 PLN02776 prenyltransferase 89.4 16 0.00034 32.8 16.0 94 59-162 174-269 (341)
59 PRK05951 ubiA prenyltransferas 89.2 11 0.00024 32.4 12.3 82 8-93 16-104 (296)
60 PRK09573 (S)-2,3-di-O-geranylg 88.9 4.6 9.9E-05 34.2 9.6 51 43-93 44-96 (279)
61 TIGR01473 cyoE_ctaB protoheme 88.9 4.2 9.2E-05 34.4 9.4 80 7-91 11-94 (280)
62 PRK12875 ubiA prenyltransferas 88.5 8.5 0.00018 33.3 11.1 18 54-71 63-80 (282)
63 PLN00012 chlorophyll synthetas 88.3 15 0.00032 33.2 12.8 46 46-92 133-181 (375)
64 PRK12883 ubiA prenyltransferas 88.1 5.5 0.00012 33.6 9.5 41 49-90 50-93 (277)
65 PRK12869 ubiA protoheme IX far 87.9 10 0.00022 32.3 11.0 79 7-91 13-95 (279)
66 PRK12324 phosphoribose diphosp 87.6 8.2 0.00018 33.7 10.5 50 46-95 56-109 (295)
67 PRK07566 bacteriochlorophyll/c 86.7 4 8.8E-05 35.5 8.1 47 47-93 76-124 (314)
68 TIGR02235 menA_cyano-plnt 1,4- 85.7 22 0.00048 30.6 12.4 88 5-97 8-98 (285)
69 PRK04375 protoheme IX farnesyl 85.5 15 0.00033 31.5 11.0 46 46-91 54-103 (296)
70 PRK12392 bacteriochlorophyll c 84.9 25 0.00054 31.1 12.2 48 52-100 66-116 (331)
71 TIGR01475 ubiA_other putative 84.9 2.6 5.6E-05 35.8 5.9 47 41-87 41-91 (282)
72 PRK07419 1,4-dihydroxy-2-napht 83.7 21 0.00047 31.2 11.2 82 6-94 22-108 (304)
73 PRK12888 ubiA prenyltransferas 83.2 20 0.00042 30.9 10.6 44 43-86 46-93 (284)
74 PRK13362 protoheme IX farnesyl 81.9 34 0.00074 29.8 11.9 48 44-91 55-106 (306)
75 TIGR01474 ubiA_proteo 4-hydrox 81.9 14 0.00031 31.5 9.3 46 46-91 50-99 (281)
76 PRK13106 ubiA prenyltransferas 79.1 12 0.00025 32.7 7.9 43 43-85 56-102 (300)
77 TIGR00751 menA 1,4-dihydroxy-2 78.9 42 0.00091 28.9 13.8 85 10-100 7-98 (284)
78 PRK13592 ubiA prenyltransferas 78.5 48 0.001 29.4 12.4 50 45-94 55-106 (299)
79 KOG1381 Para-hydroxybenzoate-p 78.2 4 8.6E-05 36.4 4.7 90 54-147 242-332 (353)
80 PRK13387 1,4-dihydroxy-2-napht 77.8 48 0.001 29.0 13.0 85 8-97 15-106 (317)
81 PLN02809 4-hydroxybenzoate non 76.0 8.6 0.00019 33.3 6.2 44 46-89 55-102 (289)
82 PRK12895 ubiA prenyltransferas 73.7 18 0.00038 31.5 7.5 47 46-92 47-97 (286)
83 COG1575 MenA 1,4-dihydroxy-2-n 73.7 39 0.00083 30.1 9.7 90 7-102 19-114 (303)
84 PRK12870 ubiA 4-hydroxybenzoat 70.2 70 0.0015 27.5 10.6 46 46-91 56-105 (290)
85 PLN02776 prenyltransferase 69.9 84 0.0018 28.2 11.6 50 41-90 34-87 (341)
86 cd00867 Trans_IPPS Trans-Isopr 69.4 9.2 0.0002 30.7 4.6 39 44-82 154-202 (236)
87 PRK12878 ubiA 4-hydroxybenzoat 68.8 71 0.0015 27.9 10.3 27 41-67 77-103 (314)
88 COG2211 MelB Na+/melibiose sym 68.8 61 0.0013 30.3 10.3 133 3-151 234-384 (467)
89 PRK12873 ubiA prenyltransferas 65.4 35 0.00077 29.8 7.7 49 43-91 51-103 (294)
90 PRK12871 ubiA prenyltransferas 65.3 92 0.002 27.0 12.4 45 49-94 55-112 (297)
91 PRK08238 hypothetical protein; 63.1 72 0.0016 29.7 9.7 51 46-96 236-290 (479)
92 PRK06080 1,4-dihydroxy-2-napht 63.1 93 0.002 26.3 15.0 87 6-97 13-105 (293)
93 PRK12876 ubiA prenyltransferas 61.9 60 0.0013 28.6 8.5 49 38-86 49-101 (300)
94 PRK13105 ubiA prenyltransferas 60.4 1.1E+02 0.0025 26.4 11.4 18 54-71 52-69 (282)
95 PRK12848 ubiA 4-hydroxybenzoat 58.7 1.1E+02 0.0025 25.9 12.2 46 47-92 53-102 (282)
96 PLN02922 prenyltransferase 54.0 1.5E+02 0.0033 25.9 11.9 55 5-63 24-78 (315)
97 PLN02878 homogentisate phytylt 53.8 61 0.0013 28.5 7.1 42 52-94 39-83 (280)
98 PRK12886 ubiA prenyltransferas 52.4 65 0.0014 27.7 7.1 38 46-84 52-94 (291)
99 PF05360 YiaAB: yiaA/B two hel 51.6 67 0.0014 21.1 6.1 31 30-60 23-53 (53)
100 PRK10133 L-fucose transporter; 49.7 1.4E+02 0.003 26.5 8.9 77 72-148 84-164 (438)
101 cd00385 Isoprenoid_Biosyn_C1 I 47.5 17 0.00036 27.7 2.4 37 44-80 148-186 (243)
102 PRK08238 hypothetical protein; 46.6 2.5E+02 0.0054 26.2 13.6 64 5-69 295-377 (479)
103 PRK13591 ubiA prenyltransferas 45.5 2.2E+02 0.0048 25.3 11.4 63 27-100 54-116 (307)
104 PF06645 SPC12: Microsomal sig 43.3 1.1E+02 0.0025 21.4 7.2 46 77-122 5-50 (76)
105 PRK10581 geranyltranstransfera 42.1 59 0.0013 28.2 5.2 48 43-90 210-268 (299)
106 TIGR02332 HpaX 4-hydroxyphenyl 40.4 2.3E+02 0.005 24.6 8.7 75 72-146 66-141 (412)
107 TIGR00769 AAA ADP/ATP carrier 38.8 3.3E+02 0.0071 25.4 11.5 25 73-97 68-92 (472)
108 TIGR00880 2_A_01_02 Multidrug 38.7 1.2E+02 0.0026 20.4 9.2 19 75-93 24-42 (141)
109 TIGR00899 2A0120 sugar efflux 37.8 2.3E+02 0.0049 23.3 10.5 20 128-147 314-333 (375)
110 TIGR00890 2A0111 Oxalate/Forma 36.6 2.3E+02 0.0049 22.9 8.7 20 75-94 64-83 (377)
111 PRK12874 ubiA prenyltransferas 35.8 2.9E+02 0.0062 23.8 9.3 42 48-89 59-104 (291)
112 PF05421 DUF751: Protein of un 33.7 1.4E+02 0.0031 20.4 5.0 43 12-57 12-57 (61)
113 PRK09705 cynX putative cyanate 29.7 3.4E+02 0.0073 23.2 8.0 46 75-120 70-115 (393)
114 PRK09848 glucuronide transport 28.5 3.9E+02 0.0086 23.2 8.9 24 73-96 288-311 (448)
115 PRK12382 putative transporter; 28.3 2.8E+02 0.0062 23.3 7.2 21 128-148 329-349 (392)
116 PF00348 polyprenyl_synt: Poly 27.3 3.6E+02 0.0078 22.3 12.6 64 36-100 33-96 (260)
117 PF02537 CRCB: CrcB-like prote 26.8 1.5E+02 0.0033 21.5 4.6 59 7-65 34-92 (117)
118 cd00867 Trans_IPPS Trans-Isopr 26.5 3.3E+02 0.0071 21.6 7.2 57 38-95 20-77 (236)
119 PRK10473 multidrug efflux syst 26.5 3.9E+02 0.0085 22.5 8.5 21 75-95 64-84 (392)
120 PRK10581 geranyltranstransfera 25.9 2.1E+02 0.0046 24.8 6.0 56 41-96 69-125 (299)
121 PF11137 DUF2909: Protein of u 25.2 1.5E+02 0.0033 20.4 4.0 37 39-79 8-44 (63)
122 cd00685 Trans_IPPS_HT Trans-Is 24.9 2.2E+02 0.0047 23.6 5.7 60 36-96 39-98 (259)
123 PTZ00207 hypothetical protein; 23.2 2.4E+02 0.0052 27.0 6.3 82 13-98 458-547 (591)
124 PF00348 polyprenyl_synt: Poly 23.1 2E+02 0.0043 23.9 5.2 43 41-83 171-224 (260)
125 TIGR00895 2A0115 benzoate tran 22.8 3.4E+02 0.0074 22.1 6.4 21 75-95 78-98 (398)
126 PRK11102 bicyclomycin/multidru 22.7 4.4E+02 0.0096 21.7 9.9 18 73-90 254-271 (377)
127 TIGR00891 2A0112 putative sial 22.2 4.5E+02 0.0097 21.6 9.0 19 75-93 73-91 (405)
128 TIGR02748 GerC3_HepT heptapren 21.3 3.6E+02 0.0077 23.4 6.6 53 42-95 69-121 (319)
129 COG0142 IspA Geranylgeranyl py 21.2 2.9E+02 0.0064 24.1 6.0 60 37-97 67-126 (322)
130 TIGR00806 rfc RFC reduced fola 20.9 7.4E+02 0.016 23.7 8.9 72 72-143 85-156 (511)
131 TIGR00898 2A0119 cation transp 20.9 4.1E+02 0.0089 23.3 7.0 21 73-93 151-171 (505)
132 TIGR02749 prenyl_cyano solanes 20.7 4.1E+02 0.009 23.1 6.9 58 37-95 68-125 (322)
133 COG2814 AraJ Arabinose efflux 20.6 5.2E+02 0.011 23.7 7.6 66 71-136 70-135 (394)
134 TIGR00903 2A0129 major facilit 20.4 5.6E+02 0.012 22.1 8.9 13 106-118 83-95 (368)
135 PRK03633 putative MFS family t 20.2 5.3E+02 0.011 21.7 10.0 24 72-95 64-87 (381)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=3.7e-51 Score=350.30 Aligned_cols=158 Identities=54% Similarity=0.931 Sum_probs=151.0
Q ss_pred ccchHHHHHHHHHHHHHHHhhh----------------------------------hhhhhccccchhHHHHHHHHHHHH
Q 039281 2 LRSPPLVLGVIVWFLFGTAYSV----------------------------------QKYVLGRPVEITRSLMFATVFICC 47 (165)
Q Consensus 2 ~~s~pLl~~~~~slllgtaYS~----------------------------------~~~vlg~~~~~~~~~~~~~~f~~~ 47 (165)
.|++|+++++..|+++|++||. +++++|+|..+++++++.+.|+++
T Consensus 88 ~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~ 167 (280)
T PLN02878 88 VGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCF 167 (280)
T ss_pred HChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHH
Confidence 4678999999999999999995 244568888899999999999999
Q ss_pred HHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281 48 FCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRA 127 (165)
Q Consensus 48 f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra 127 (165)
|+.++|++||+||+||||++|+||+|+++|+|+++++|..++.+||++++.+|++++..+++++|+.||++++..+|+|+
T Consensus 168 f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~rs 247 (280)
T PLN02878 168 FSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQRA 247 (280)
T ss_pred HHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 039281 128 RTVDLSSNTSTFSFYMFIWKASDCTYILNQIP 159 (165)
Q Consensus 128 ~~vdl~sk~~i~sfY~fIWkLFy~EYll~P~~ 159 (165)
|+||++||++++|||||||||||+||+++|++
T Consensus 248 ~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~ 279 (280)
T PLN02878 248 QSVDLSSKAAITSFYMFIWKLFYAEYFLIPLV 279 (280)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999985
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=1.3e-44 Score=311.94 Aligned_cols=160 Identities=35% Similarity=0.592 Sum_probs=148.4
Q ss_pred cchHHHHHHHHHHHHHHHhhhh---------------------h----------hhhccccchhHHHHHHHHHHHHHHHH
Q 039281 3 RSPPLVLGVIVWFLFGTAYSVQ---------------------K----------YVLGRPVEITRSLMFATVFICCFCIA 51 (165)
Q Consensus 3 ~s~pLl~~~~~slllgtaYS~~---------------------~----------~vlg~~~~~~~~~~~~~~f~~~f~~~ 51 (165)
.||++++.+.+++++|++||.+ . ...+++..+++++++.++++++++.+
T Consensus 118 ~~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 197 (308)
T PRK12887 118 LGPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFA 197 (308)
T ss_pred HhHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHH
Confidence 4788999999999999999951 0 01233446778889999999999999
Q ss_pred HHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 039281 52 SAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVD 131 (165)
Q Consensus 52 i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vd 131 (165)
++++||+||+||||+.|+||+|+++|+|++.+++..++.++|+.+++.++.+...+++..++.||++++..+|+|++++|
T Consensus 198 ~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (308)
T PRK12887 198 IAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVD 277 (308)
T ss_pred HHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039281 132 LSSNTSTFSFYMFIWKASDCTYILNQIPHAS 162 (165)
Q Consensus 132 l~sk~~i~sfY~fIWkLFy~EYll~P~~~~~ 162 (165)
++||+||+|||||||||||+||+++|++|++
T Consensus 278 ~~~~~~~~~~y~~iw~l~~~ey~~~~~~~~~ 308 (308)
T PRK12887 278 LQDKQAIAQFYQFIWKLFFLEYLLFPIACLL 308 (308)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999984
No 3
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.65 E-value=4.4e-15 Score=127.62 Aligned_cols=98 Identities=23% Similarity=0.200 Sum_probs=82.6
Q ss_pred cchHHHHHHHHHHHHHHHhhhhh---------------------hhhcc---ccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281 3 RSPPLVLGVIVWFLFGTAYSVQK---------------------YVLGR---PVEITRSLMFATVFICCFCIASAFLKDL 58 (165)
Q Consensus 3 ~s~pLl~~~~~slllgtaYS~~~---------------------~vlg~---~~~~~~~~~~~~~f~~~f~~~i~i~KDi 58 (165)
++|+.+....++++++..||.+. .++|. ...++++.++....+.+++.+++++||+
T Consensus 103 ~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~i 182 (282)
T PRK13105 103 GSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFGAV 182 (282)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 46788888889999999999832 12222 2335666788888889999999999999
Q ss_pred CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281 59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVG 100 (165)
Q Consensus 59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g 100 (165)
||+||||+.|+||+|+|+|+|++.+++..+..++++..+..+
T Consensus 183 rDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 183 QDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred cchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888544
No 4
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.63 E-value=2.3e-14 Score=121.59 Aligned_cols=100 Identities=21% Similarity=0.274 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHHHHHHhhhhh--------------------hhhc----cccchhHHHHHHHHHHHHHHHHHHHHhccC
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQK--------------------YVLG----RPVEITRSLMFATVFICCFCIASAFLKDLH 59 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~~--------------------~vlg----~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~ 59 (165)
+|++++...++.+++.+||.+. .+.| .....+.+.++.+.+.++++..+.+.||+|
T Consensus 112 ~~~~~~~~~~~~~~~~~Ys~~p~~~~~~glge~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~ 191 (293)
T PRK06080 112 GWWLLLLGLLCIAAAILYTGGPKPYGYTGLGELFVGVFFGLVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIR 191 (293)
T ss_pred hHHHHHHHHHHHHHhhhhcCCCCccCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6778888889999999999821 1111 123456778889999999999999999999
Q ss_pred ChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039281 60 DVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASS 103 (165)
Q Consensus 60 DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~ 103 (165)
|+||||+.|+||+|+++|+|++.+++..+...+|+..+......
T Consensus 192 D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~ 235 (293)
T PRK06080 192 DIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLG 235 (293)
T ss_pred cchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999888776665
No 5
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.62 E-value=1.9e-14 Score=123.44 Aligned_cols=147 Identities=13% Similarity=0.090 Sum_probs=106.5
Q ss_pred cchHHHHHHHHHHHHHHHhhhhh--------------------hhhc----cccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281 3 RSPPLVLGVIVWFLFGTAYSVQK--------------------YVLG----RPVEITRSLMFATVFICCFCIASAFLKDL 58 (165)
Q Consensus 3 ~s~pLl~~~~~slllgtaYS~~~--------------------~vlg----~~~~~~~~~~~~~~f~~~f~~~i~i~KDi 58 (165)
.+|+++..+.+++++|..||.+. .+.| ++..++++.+..+..+++.+.++...||+
T Consensus 104 ~~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~ 183 (285)
T TIGR02235 104 WQITVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGPLAIAAALYAQSQSFSLIPWKASILVGLATTLILFCSHF 183 (285)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCCcccCCCCccHHHHHHHHHHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46999999999999999999731 1122 14567888899999999999999999999
Q ss_pred CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCchh
Q 039281 59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTV--DLSSNT 136 (165)
Q Consensus 59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~v--dl~sk~ 136 (165)
||+|.||+.|+||+|+|+|+|++.+++..++..+|+..+........+|...+ -.+..+..+...|++ +.++++
T Consensus 184 rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~ll----~ll~lPl~~~~~~~~~~~~~~~~ 259 (285)
T TIGR02235 184 HQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTTLL----ALASIPWAVKLIRLVRQNHNNPE 259 (285)
T ss_pred ccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999987766555544443332 233334343333332 111222
Q ss_pred ------hHHHHHHHHHHHHHHHH
Q 039281 137 ------STFSFYMFIWKASDCTY 153 (165)
Q Consensus 137 ------~i~sfY~fIWkLFy~EY 153 (165)
..+.--++.+.++|.-.
T Consensus 260 ~l~~~l~~t~~~~~~~g~l~~~g 282 (285)
T TIGR02235 260 QISNCKFIAVRFHFLSGILLTLG 282 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 23555666666666543
No 6
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.62 E-value=2e-14 Score=120.94 Aligned_cols=107 Identities=24% Similarity=0.342 Sum_probs=84.5
Q ss_pred cchHHHHHHHHHHHHHHHhhhhh------------hhhc--------------cccchhHHHHHHHHHHHHHHHHHHHHh
Q 039281 3 RSPPLVLGVIVWFLFGTAYSVQK------------YVLG--------------RPVEITRSLMFATVFICCFCIASAFLK 56 (165)
Q Consensus 3 ~s~pLl~~~~~slllgtaYS~~~------------~vlg--------------~~~~~~~~~~~~~~f~~~f~~~i~i~K 56 (165)
++|+.++.+.++.++|..||.+. .+.| .+..++.+.+..+.++++..+.+++.|
T Consensus 102 ~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~ 181 (285)
T PRK12872 102 GGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLILGVYYYQLTIFSLLLLYAVFIFLKSFIREIVF 181 (285)
T ss_pred ccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 47888888888999999999720 0000 012245666777788888899999999
Q ss_pred ccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 039281 57 DLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSK 109 (165)
Q Consensus 57 Di~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~ 109 (165)
|+||+||||+.|++|+|+++|+|++.+++..+....++..+........++-.
T Consensus 182 d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (285)
T PRK12872 182 DIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLL 234 (285)
T ss_pred hcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHH
Confidence 99999999999999999999999999999999999999888666655433333
No 7
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.60 E-value=3e-14 Score=123.44 Aligned_cols=149 Identities=14% Similarity=0.080 Sum_probs=108.5
Q ss_pred cchHHHHHHHHHHHHHHHhhhhh--------------------hhhcc----ccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281 3 RSPPLVLGVIVWFLFGTAYSVQK--------------------YVLGR----PVEITRSLMFATVFICCFCIASAFLKDL 58 (165)
Q Consensus 3 ~s~pLl~~~~~slllgtaYS~~~--------------------~vlg~----~~~~~~~~~~~~~f~~~f~~~i~i~KDi 58 (165)
.|||++..+.++.++|..||.+. .+.|. +..++.+.+..+..+++.+..+...||+
T Consensus 117 ~g~~~l~ig~~g~~~~~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~ 196 (304)
T PRK07419 117 SDWTVLGLVLLCCFLGYLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHF 196 (304)
T ss_pred hcHHHHHHHHHHHHHhheccCCCcccCCCCchHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999831 11111 4567788889999999999999999999
Q ss_pred CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCchh
Q 039281 59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTV--DLSSNT 136 (165)
Q Consensus 59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~v--dl~sk~ 136 (165)
||+|.||+.|+||+|+|+|+|++.+++..+...+|+..+........++...+ -.+..+..+...|.+ |.++++
T Consensus 197 rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~Ll----~ll~lPl~~~~~~~~~~~~~~~~ 272 (304)
T PRK07419 197 HQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTTLL----SLLSLPFAIKLIRLVRENHDQPE 272 (304)
T ss_pred cchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999988876665533332222 233344444333332 111222
Q ss_pred ------hHHHHHHHHHHHHHHHHHH
Q 039281 137 ------STFSFYMFIWKASDCTYIL 155 (165)
Q Consensus 137 ------~i~sfY~fIWkLFy~EYll 155 (165)
.-+.-.++.+.+.+.--++
T Consensus 273 ~l~~~l~~t~~~~~l~g~l~~l~~~ 297 (304)
T PRK07419 273 KVSNSKFIAVRFHFWSGLLLSLGLI 297 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2456667777776665443
No 8
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.60 E-value=6.6e-14 Score=120.04 Aligned_cols=141 Identities=18% Similarity=0.227 Sum_probs=106.4
Q ss_pred cchHHHHHHHHHHHHHHHhhhhh--------------------hhhcc----ccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281 3 RSPPLVLGVIVWFLFGTAYSVQK--------------------YVLGR----PVEITRSLMFATVFICCFCIASAFLKDL 58 (165)
Q Consensus 3 ~s~pLl~~~~~slllgtaYS~~~--------------------~vlg~----~~~~~~~~~~~~~f~~~f~~~i~i~KDi 58 (165)
.+|+.+....++.+++..||.+. .++|. ...++.+.+..+...++.+..+...||+
T Consensus 114 ~~~~~l~l~~~~~~~~~~Yt~~P~~lky~glGe~~v~~~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~ 193 (296)
T PRK05951 114 RGIGAVTLALLGVFLWTCYMGPPFFLKYRWLGEHLVFYAWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNL 193 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCCcccCCCCchHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCC
Confidence 45777888889999999999732 12222 2334566667777788888999999999
Q ss_pred CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhH
Q 039281 59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTST 138 (165)
Q Consensus 59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i 138 (165)
||+|+||+.|+||+|+|+|+|++ +++..+...+|+..+........++...+...++-.....+.++.+..|.+++++.
T Consensus 194 ~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~ 272 (296)
T PRK05951 194 RDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEAT 272 (296)
T ss_pred ccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHH
Confidence 99999999999999999999999 88888888899888877776644444555556666666666667777777777666
Q ss_pred HHHHHH
Q 039281 139 FSFYMF 144 (165)
Q Consensus 139 ~sfY~f 144 (165)
.+.++.
T Consensus 273 ~~~~~~ 278 (296)
T PRK05951 273 VQLFML 278 (296)
T ss_pred HHHHHH
Confidence 666554
No 9
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=99.59 E-value=3.4e-14 Score=120.27 Aligned_cols=151 Identities=15% Similarity=0.170 Sum_probs=99.7
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhhhhccc------------------------cchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281 3 RSPPLVLGVIVWFLFGTAYSVQKYVLGRP------------------------VEITRSLMFATVFICCFCIASAFLKDL 58 (165)
Q Consensus 3 ~s~pLl~~~~~slllgtaYS~~~~vlg~~------------------------~~~~~~~~~~~~f~~~f~~~i~i~KDi 58 (165)
++|+....+.++.+.+.+||.+..-+|+. ...+++.++....+++++.+++++||+
T Consensus 104 ~~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~~nd~ 183 (283)
T TIGR01476 104 GNWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGAHGIMTLNDF 183 (283)
T ss_pred HHHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34554666677888999999731111110 124555666677778899999999999
Q ss_pred CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhH
Q 039281 59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTST 138 (165)
Q Consensus 59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i 138 (165)
||+||||+.|+||+|+++|+|++.+++..++.++|...+........++. ....-.++.+.++...|..- +++++.
T Consensus 184 ~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~l~~ll~~p~~~~~~~~~~-~~~~~~ 259 (283)
T TIGR01476 184 KSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWV---ATIVFLLLVAQIYNQIKLFL-RDPQQN 259 (283)
T ss_pred cchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHH---HHHHHHHHHHHHHHHHHHHH-hChHHh
Confidence 99999999999999999999999999999999999777644433222211 11112233333333322221 244555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 039281 139 FSFYMFIWKASDCTYILNQ 157 (165)
Q Consensus 139 ~sfY~fIWkLFy~EYll~P 157 (165)
..=|.-.++++++=-.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~ 278 (283)
T TIGR01476 260 YVRYNATANPFYVLGMLAA 278 (283)
T ss_pred hHHhhhhcHHHHHHHHHHH
Confidence 5666788888877666654
No 10
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.58 E-value=9.1e-14 Score=119.23 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhhhh--------------------hhhhcc----ccchhHHHHHHHHHHHHHHHHHHHHhccCCh
Q 039281 6 PLVLGVIVWFLFGTAYSVQ--------------------KYVLGR----PVEITRSLMFATVFICCFCIASAFLKDLHDV 61 (165)
Q Consensus 6 pLl~~~~~slllgtaYS~~--------------------~~vlg~----~~~~~~~~~~~~~f~~~f~~~i~i~KDi~Di 61 (165)
++++.+.++.++|.+||.+ ..++|. ...++++.++.+...++++..++..||+||+
T Consensus 110 ~~l~lg~~~~~~~~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~ 189 (284)
T TIGR00751 110 WFIALGALCIAAAITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQYLQAHRVDWVGILPAVATGLLACAVLNINNLRDI 189 (284)
T ss_pred HHHHHHHHHHHHhHhhcCCCCccccCchHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 7788888999999999983 112222 4456777778888889999999999999999
Q ss_pred hhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039281 62 DGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSS 104 (165)
Q Consensus 62 eGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~ 104 (165)
|+||+.|+||+|+|+|+|++.+++..++..+|+..+.......
T Consensus 190 ~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~ 232 (284)
T TIGR00751 190 PTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATP 232 (284)
T ss_pred hhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999988776555443
No 11
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.57 E-value=1.9e-13 Score=118.82 Aligned_cols=101 Identities=21% Similarity=0.171 Sum_probs=81.4
Q ss_pred cchHHHHHHHHHHHHHHHhhhhhh--------------------hhcc----ccchhHHHH-------------------
Q 039281 3 RSPPLVLGVIVWFLFGTAYSVQKY--------------------VLGR----PVEITRSLM------------------- 39 (165)
Q Consensus 3 ~s~pLl~~~~~slllgtaYS~~~~--------------------vlg~----~~~~~~~~~------------------- 39 (165)
.+|+++..+.++.++|..||.+.. ++|. +..++...+
T Consensus 112 ~g~~~l~igl~g~~~~~~Yt~gP~~l~y~gLGe~~v~i~~G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (317)
T PRK13387 112 TSWLLLVIGLICFAIGILYTGGPLPLSRMPLGEIFSGLTMGFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAI 191 (317)
T ss_pred hcHHHHHHHHHHHHHhhhhcCCCcccccCccHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHH
Confidence 578999999999999999998311 1111 222333322
Q ss_pred -HHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039281 40 -FATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASS 103 (165)
Q Consensus 40 -~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~ 103 (165)
+.+..+++....+++.||+||+|+||+.|+||+|+|+|+|++.+++..+...+|+..+......
T Consensus 192 ~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~~g 256 (317)
T PRK13387 192 GVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVLMG 256 (317)
T ss_pred HHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888889999999999999999999999999999999999999999999999877665554
No 12
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.56 E-value=2.4e-14 Score=124.76 Aligned_cols=86 Identities=17% Similarity=0.181 Sum_probs=74.3
Q ss_pred HHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039281 50 IASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRART 129 (165)
Q Consensus 50 ~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~ 129 (165)
++++++||+||+||||+.|++|+|+++|+|++.++...+...+|+..+........++...+.+-+-.+-...+|+-+++
T Consensus 193 ~~~~iindirDiEGDr~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~~ 272 (307)
T PRK13591 193 FINSCVYDFKDVKGDTLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSSP 272 (307)
T ss_pred HHHHHHHHhhhhHhHHHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcCC
Confidence 77889999999999999999999999999999999999999999999888887777777777676667777778877777
Q ss_pred ccCCch
Q 039281 130 VDLSSN 135 (165)
Q Consensus 130 vdl~sk 135 (165)
.|-+++
T Consensus 273 ~~~~~~ 278 (307)
T PRK13591 273 FENEPS 278 (307)
T ss_pred cccCcH
Confidence 766654
No 13
>PLN02922 prenyltransferase
Probab=99.55 E-value=3e-13 Score=117.71 Aligned_cols=104 Identities=18% Similarity=0.271 Sum_probs=87.4
Q ss_pred cchHHHHHHHHHHHHHHHhhhh--------------------hhhhcc----cc----------chhHHHHHHHHHHHHH
Q 039281 3 RSPPLVLGVIVWFLFGTAYSVQ--------------------KYVLGR----PV----------EITRSLMFATVFICCF 48 (165)
Q Consensus 3 ~s~pLl~~~~~slllgtaYS~~--------------------~~vlg~----~~----------~~~~~~~~~~~f~~~f 48 (165)
++|++++.+.++++.|..||.+ -.+.|. +. .++.+.+.++..+++.
T Consensus 121 ~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gLGE~~v~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll 200 (315)
T PLN02922 121 GNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLT 200 (315)
T ss_pred cChHHHHHHHHHHHHHHHHhcCCcccccCcchHHHHHHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHH
Confidence 5799999999999999999972 011111 11 3567788999999999
Q ss_pred HHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 039281 49 CIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSIL 106 (165)
Q Consensus 49 ~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~ 106 (165)
+..+..+||+||+|.||+.|+||+|+|+|+|++.+++..++..+|+..+...+....+
T Consensus 201 ~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p 258 (315)
T PLN02922 201 TTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALP 258 (315)
T ss_pred HHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999888776665433
No 14
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.54 E-value=3.2e-13 Score=116.44 Aligned_cols=145 Identities=17% Similarity=0.213 Sum_probs=96.2
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhhcc------------------------ccchhHHHHHHHHHHHHHHHHHHHHhccC
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQKYVLGR------------------------PVEITRSLMFATVFICCFCIASAFLKDLH 59 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~~~vlg~------------------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~ 59 (165)
+|+.++.+.++++++.+||.+..-+++ ...++++.+.....+++.+.++++.||+|
T Consensus 127 ~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~ 206 (306)
T TIGR02056 127 FPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFK 206 (306)
T ss_pred chHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 467777888999999999962111111 13445666778888889999999999999
Q ss_pred ChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhH
Q 039281 60 DVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASS-SILLSKLLTIISHCILASSLWLRARTVDLSSNTST 138 (165)
Q Consensus 60 DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~-~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i 138 (165)
|+||||+.|+||+|+++|+|++.+++..++..+|...+..-... ..++...+ -.+..+.++++.|++- ++++..
T Consensus 207 D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll----~ll~~p~~~~~~~~~~-~~~~~~ 281 (306)
T TIGR02056 207 SVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAAAL----VALIIPQITFQDKYFL-KDPLKN 281 (306)
T ss_pred ChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHH----HHHHHHHHHHHHHHHH-hChHhh
Confidence 99999999999999999999999999999888887655433332 22222222 2222333444434332 144444
Q ss_pred HHHHHHHHHHHHHHH
Q 039281 139 FSFYMFIWKASDCTY 153 (165)
Q Consensus 139 ~sfY~fIWkLFy~EY 153 (165)
...|+-.=++||.-.
T Consensus 282 ~~~~~~~~~~~~~~~ 296 (306)
T TIGR02056 282 DVKYQASAQPFLVLG 296 (306)
T ss_pred CcchhhhhhHHHHHH
Confidence 455555555555544
No 15
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=99.50 E-value=3e-12 Score=108.84 Aligned_cols=149 Identities=15% Similarity=0.254 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHHHHhhhh-----------------hhhhcccc---chhHHHHHHHHHHHHHHHHHHHHhccCChhhhhh
Q 039281 7 LVLGVIVWFLFGTAYSVQ-----------------KYVLGRPV---EITRSLMFATVFICCFCIASAFLKDLHDVDGDKE 66 (165)
Q Consensus 7 Ll~~~~~slllgtaYS~~-----------------~~vlg~~~---~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~ 66 (165)
.++...+++++++.|--. ....|... ..+.+.+++..+..+.+.+.+++||+||+||||+
T Consensus 118 ~~~l~~~~~~l~~~Y~~~Kr~~~~~~~~lg~~~~~~~~~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~ 197 (289)
T COG0382 118 AFLLSLAALVLALAYPFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRK 197 (289)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHh
Confidence 355666788888888330 11122211 1467788999999999999999999999999999
Q ss_pred cCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHHHHH
Q 039281 67 FGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYMFIW 146 (165)
Q Consensus 67 ~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i~sfY~fIW 146 (165)
.|++|.|+++|+|++.+++.... ........++..... ....-..++...+..+++|.+.+|.++++....+++.-.
T Consensus 198 ~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (289)
T COG0382 198 AGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGL--LGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNL 274 (289)
T ss_pred cCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhh
Confidence 99999999999999999998888 444444444443322 224567788888999999999999998888888888887
Q ss_pred HHHHHHHHHHHH
Q 039281 147 KASDCTYILNQI 158 (165)
Q Consensus 147 kLFy~EYll~P~ 158 (165)
.+-.+..+...+
T Consensus 275 ~~~~~~~~~~~~ 286 (289)
T COG0382 275 LLGLLLFIGLIL 286 (289)
T ss_pred HHHHHHHHHHHH
Confidence 777666655544
No 16
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=99.49 E-value=4.8e-13 Score=117.18 Aligned_cols=101 Identities=18% Similarity=0.336 Sum_probs=77.0
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhhhcc------------------------ccchhHHHHHHHHHHHHHHHHHHHHhccC
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQKYVLGR------------------------PVEITRSLMFATVFICCFCIASAFLKDLH 59 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~~~vlg~------------------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~ 59 (165)
+|+.++.+.++++++.+||.+..-++| ...++++.+....+.++.+.+++++||+|
T Consensus 124 ~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~ 203 (331)
T PRK12392 124 GMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFK 203 (331)
T ss_pred hHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 345556667889999999973221221 01245556677778888999999999999
Q ss_pred ChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039281 60 DVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSS 104 (165)
Q Consensus 60 DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~ 104 (165)
|+||||+.|+||+|+++|+|++.+++.....+..+..+..+....
T Consensus 204 D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~ 248 (331)
T PRK12392 204 SVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWG 248 (331)
T ss_pred chhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999988877677766666665553
No 17
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=99.46 E-value=6.6e-12 Score=106.45 Aligned_cols=101 Identities=10% Similarity=0.128 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039281 36 RSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIIS 115 (165)
Q Consensus 36 ~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~ 115 (165)
.+.+.......+.+...+++||.||+||||+.|++|+|+++|+|++.+++.....+.+...+..+......+. -..+
T Consensus 158 ~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~---y~~~ 234 (282)
T TIGR01475 158 LVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGYI---ALLA 234 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcHH---HHHH
Confidence 3445555566777788999999999999999999999999999999999988888888887777766543222 2235
Q ss_pred HHHHHHHHHHHHHHccCCchhhHH
Q 039281 116 HCILASSLWLRARTVDLSSNTSTF 139 (165)
Q Consensus 116 H~~l~~~l~~ra~~vdl~sk~~i~ 139 (165)
..+....++++.+.+|.+|+++..
T Consensus 235 ~~~~~~~l~~~~~~~~~~~~~~~~ 258 (282)
T TIGR01475 235 LILIGLILAYEHYIVDPGDQSKIQ 258 (282)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHH
Confidence 556667788888899988876553
No 18
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=99.45 E-value=6.6e-12 Score=105.70 Aligned_cols=100 Identities=20% Similarity=0.324 Sum_probs=73.8
Q ss_pred chHHHHHHHHHHHHHHHhhhh------------------hhhhccc--cchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQ------------------KYVLGRP--VEITRSLMFATVFICCFCIASAFLKDLHDVDG 63 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~------------------~~vlg~~--~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG 63 (165)
|++.++...++.+.+..||.. ..+.|.. ...+.+.+....++.+.+.+.++.||+||+||
T Consensus 103 ~~~~~~~~~~~~~~~~~Ys~~lK~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~ 182 (279)
T PRK12884 103 SPLAFLVVILVSVLGILYNWKLKEYGLIGNLYVAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVEG 182 (279)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455666667888889999972 0011110 11122456666677788888999999999999
Q ss_pred hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039281 64 DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASS 103 (165)
Q Consensus 64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~ 103 (165)
||+.|+||+|+++|+|++.+++..+....++..+......
T Consensus 183 D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
T PRK12884 183 DRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFG 222 (279)
T ss_pred HHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888887665544443
No 19
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.45 E-value=2.6e-12 Score=111.19 Aligned_cols=95 Identities=17% Similarity=0.322 Sum_probs=75.4
Q ss_pred chHHHHHHHHHHHHHHHhhhhh-----------hhhcc---------------ccchhHHHHHHHHHHHHHHHHHHHHhc
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQK-----------YVLGR---------------PVEITRSLMFATVFICCFCIASAFLKD 57 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~~-----------~vlg~---------------~~~~~~~~~~~~~f~~~f~~~i~i~KD 57 (165)
+|+..+...++++++.+||.+. .+.|. +...++..++...+.++.+.+++.+||
T Consensus 131 ~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d 210 (314)
T PRK07566 131 GPWVFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLND 210 (314)
T ss_pred ChHHHHHHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666667778899999999421 11111 123556677777788888999999999
Q ss_pred cCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHH
Q 039281 58 LHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVV 98 (165)
Q Consensus 58 i~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~ 98 (165)
++|+|+||+.|+||+|+++|+|++.+++..++..+|+..+.
T Consensus 211 ~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~~ 251 (314)
T PRK07566 211 FKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAVIA 251 (314)
T ss_pred HHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887643
No 20
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.43 E-value=1.6e-11 Score=99.70 Aligned_cols=80 Identities=28% Similarity=0.516 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHHHHHHhhhh----------h----h------hhc---cccchhHHHHHHHHHHHHHHHHHHHHhccCC
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQ----------K----Y------VLG---RPVEITRSLMFATVFICCFCIASAFLKDLHD 60 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~----------~----~------vlg---~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~D 60 (165)
+++.+....++.+.+.+||-+ . . ..| .....+.+.+....+..++...+...+|++|
T Consensus 91 ~~~~~~~~~~~~~~~~~Ys~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 170 (257)
T PF01040_consen 91 GPWFLLILLLGFLLGLLYSPPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRD 170 (257)
T ss_pred CchhHHHHHHHHHHHHHHhhhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456666667778888999930 0 0 000 0122356677777787899999999999999
Q ss_pred hhhhhhcCCcchhHHhhHHHHHH
Q 039281 61 VDGDKEFGIETLSVKLGKERVFW 83 (165)
Q Consensus 61 ieGDr~~Gi~Tlav~lG~~~~~~ 83 (165)
+||||+.|+||+|+++|+|++..
T Consensus 171 ~~~D~~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 171 IEGDRKAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HHHHHHcCCcchHHHHHHHHHHH
Confidence 99999999999999999999998
No 21
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.42 E-value=1.1e-11 Score=110.51 Aligned_cols=146 Identities=18% Similarity=0.252 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHHHHHHhhhh-----------hhhhcc-------------ccchhHHHHHHHHHHHHHHHHHHHHhccC
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQ-----------KYVLGR-------------PVEITRSLMFATVFICCFCIASAFLKDLH 59 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~-----------~~vlg~-------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~ 59 (165)
+|+.++...++.+++.+||.+ ..++|. ...+++..++.+.++++.+.+++++||+|
T Consensus 196 ~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal~~~l~~lai~ivnd~~ 275 (375)
T PLN00012 196 FPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFK 275 (375)
T ss_pred cHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 345556666788889999951 112221 13455667778888889999999999999
Q ss_pred ChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhHH
Q 039281 60 DVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTF 139 (165)
Q Consensus 60 DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i~ 139 (165)
|+||||+.|++|+|+++|+|++.+++..++.+.+...+ +..... .........-.+.+..++++.+ ..++|+.+..
T Consensus 276 Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~--~~l~~~-~~~~y~~~~~~l~l~~l~~~~~-~~~~~p~~~~ 351 (375)
T PLN00012 276 SIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVA--GYLLAI-GKPYYALALLGLIIPQIFFQFK-YFLPDPVKND 351 (375)
T ss_pred chhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHH--HHHHHH-hHHHHHHHHHHHHHHHHHHHHH-HHhcCHHHHH
Confidence 99999999999999999999999999876776665443 222111 0111111112233333333333 3344666666
Q ss_pred HHHHHHHHHHHHHH
Q 039281 140 SFYMFIWKASDCTY 153 (165)
Q Consensus 140 sfY~fIWkLFy~EY 153 (165)
.-|+-.=+.|+.=.
T Consensus 352 ~~~~~~a~~~~~~~ 365 (375)
T PLN00012 352 VKYQASAQPFLVFG 365 (375)
T ss_pred HHHHHHHHHHHHHH
Confidence 66665555554433
No 22
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.40 E-value=8e-12 Score=108.84 Aligned_cols=149 Identities=19% Similarity=0.202 Sum_probs=111.9
Q ss_pred cchHHHHHHHHHHHHHHHhhhh--------------------hhhhcc----ccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281 3 RSPPLVLGVIVWFLFGTAYSVQ--------------------KYVLGR----PVEITRSLMFATVFICCFCIASAFLKDL 58 (165)
Q Consensus 3 ~s~pLl~~~~~slllgtaYS~~--------------------~~vlg~----~~~~~~~~~~~~~f~~~f~~~i~i~KDi 58 (165)
.+|.+++.+.+|.++|..|+++ ..++|. ++.+++.....+..++..+..+...||+
T Consensus 119 s~~~~l~lG~l~~~~g~~YTgGp~PlgY~gLGEi~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNi 198 (303)
T COG1575 119 SDWLVLLLGLLCIAAGILYTGGPFPLGYMGLGEIFVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNL 198 (303)
T ss_pred hhhHHHHHHHHHHHheeeeccCCcCcccCCHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhccc
Confidence 3567788899999999999993 122232 6778899999999999999999999999
Q ss_pred CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-hh-
Q 039281 59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSS-NT- 136 (165)
Q Consensus 59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~s-k~- 136 (165)
+|+|-|++.|++|+|+|+|+|+++.+...++..+|+..++.-.....++-..+ -.+.++...+..|++--++ +.
T Consensus 199 rDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~~ll----~ll~~Pl~ir~~r~v~~~~~~~~ 274 (303)
T COG1575 199 RDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVWGLL----FLLALPLAIRAARPVRQNQVPAT 274 (303)
T ss_pred ccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH----HHHHHHHHHHHHHHHHhccCchH
Confidence 99999999999999999999999999999999999988765444443332233 3344555555555543321 11
Q ss_pred -----hHHHHHHHHHHHHHHHHHH
Q 039281 137 -----STFSFYMFIWKASDCTYIL 155 (165)
Q Consensus 137 -----~i~sfY~fIWkLFy~EYll 155 (165)
+-+..-+.+|.+-++--++
T Consensus 275 ~~p~l~~~~~~~~~~~~l~~~~i~ 298 (303)
T COG1575 275 LVPMLKNTVKANLLWNLLLAVGIL 298 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677788876655444
No 23
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.38 E-value=1.8e-11 Score=104.02 Aligned_cols=131 Identities=9% Similarity=0.103 Sum_probs=90.8
Q ss_pred chHHHHHHHHHHHHHHHhhhh-------hhhhcc-------------ccchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQ-------KYVLGR-------------PVEITRSLMFATVFICCFCIASAFLKDLHDVDG 63 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~-------~~vlg~-------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG 63 (165)
++..++...++++++..||.. ..+.|- ...++.+.++......+.+...+++||++|+|+
T Consensus 113 ~~~~~~~~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~ 192 (285)
T PRK12847 113 NKTTIYLSFIAVILIVLYPLMKRFFYWPQLFLGFTFNMGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKD 192 (285)
T ss_pred hHHHHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence 455566667788889999851 111111 123556667777777888888999999999999
Q ss_pred hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhH
Q 039281 64 DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTST 138 (165)
Q Consensus 64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i 138 (165)
||+.|++|+|+++|+|++.+++.......+...+..-.....++-- .++++....++++.+.+|.+|+++.
T Consensus 193 D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~y----~~~~~~~~~l~~~~~~~~~~~~~~~ 263 (285)
T PRK12847 193 DLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHNIFY----LAILAAAGIFYYQYKLLDFDNPANC 263 (285)
T ss_pred HHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcHHHH----HHHHHHHHHHHHHHHHhCCCCHHHH
Confidence 9999999999999999999988887777766554332222211111 2344455677788888988876543
No 24
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.38 E-value=7.2e-12 Score=108.64 Aligned_cols=89 Identities=17% Similarity=0.273 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHHHHHHhhhh-------------------------hhhhccccchhHHHHHHHHHHHHHHHHHHHHhcc
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQ-------------------------KYVLGRPVEITRSLMFATVFICCFCIASAFLKDL 58 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~-------------------------~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi 58 (165)
++..+....++++++.+||.. ..+.|.+. ++.. .....+++.+.+++||+
T Consensus 117 ~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~~~~g~p~~~~~~~~g~~~--~~~~---l~a~~~w~~g~dii~ai 191 (292)
T PRK13595 117 PPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSNAAYALPLALPALALGAPV--PWPP---LLALMAWSVGKHAFDAA 191 (292)
T ss_pred hHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHHHHHHHHHHHHHHHcCCcc--hHHH---HHHHHHHHHHHHHHHhc
Confidence 455566667888999999952 11122111 1211 23345677999999999
Q ss_pred CChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHH
Q 039281 59 HDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAV 97 (165)
Q Consensus 59 ~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i 97 (165)
||+||||+.|+||+|+++|+|++.++|..+..++-+...
T Consensus 192 ~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~ 230 (292)
T PRK13595 192 QDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGALLW 230 (292)
T ss_pred cChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998887766544433
No 25
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=99.36 E-value=2.4e-11 Score=104.60 Aligned_cols=95 Identities=20% Similarity=0.311 Sum_probs=73.6
Q ss_pred HHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281 48 FCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRA 127 (165)
Q Consensus 48 f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra 127 (165)
-+.+-+++++.+|+|+||+.|++|+|+++|+|+..+++. +....+.....+|... ..+.... .+|++.+..+++|.
T Consensus 178 W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~-~~~~~~~~l~~~g~~~--~~~~~~~-~~~~~~~~~l~~~~ 253 (289)
T PLN02809 178 WTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTG-FGAASIGGLALSGYNA--GLGWPYY-AGLAAAAGHLAWQI 253 (289)
T ss_pred HHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHH-HHHHHHHHHHHHHHHh--cCcHHHH-HHHHHHHHHHHHHH
Confidence 366677999999999999999999999999998888875 5555677666666544 3344444 37999999999999
Q ss_pred HHccCCchhhHHH-HHHHHH
Q 039281 128 RTVDLSSNTSTFS-FYMFIW 146 (165)
Q Consensus 128 ~~vdl~sk~~i~s-fY~fIW 146 (165)
+.+|++|+++..+ |.+..|
T Consensus 254 ~~v~~~~~~~~~~~F~~n~~ 273 (289)
T PLN02809 254 QTVDLSSRADCNRKFVSNKW 273 (289)
T ss_pred HHcCCCCHHHHHHHHHhCCH
Confidence 9999999887643 444333
No 26
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=99.35 E-value=5.3e-11 Score=100.50 Aligned_cols=98 Identities=17% Similarity=0.245 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039281 39 MFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCI 118 (165)
Q Consensus 39 ~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~ 118 (165)
+....+..+...+++++||+||+||||+.|++|+|+++|+|++.+++..............-... ..+....+..-..
T Consensus 160 ~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~--~~~~~y~~~~~~~ 237 (276)
T PRK12882 160 LVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLS--TFGLWYLVLVAPA 237 (276)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHH
Confidence 34444445556789999999999999999999999999999999988777665554443221111 1222222222223
Q ss_pred HHHHHHHHHHHccCCchhhH
Q 039281 119 LASSLWLRARTVDLSSNTST 138 (165)
Q Consensus 119 l~~~l~~ra~~vdl~sk~~i 138 (165)
.+..++...+..|.+|+++.
T Consensus 238 ~~~~l~~~~~~~~~~~~~~~ 257 (276)
T PRK12882 238 DLVMLAAAYRSLKKTDPTAS 257 (276)
T ss_pred HHHHHHHHHHHHcCCCHHHH
Confidence 33344445566666665433
No 27
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=99.34 E-value=6.8e-11 Score=101.35 Aligned_cols=106 Identities=11% Similarity=0.191 Sum_probs=80.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039281 34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTI 113 (165)
Q Consensus 34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~ 113 (165)
++++.+++....++.+.+.+++||++|+|+||+.|+||+|+++|+|++.+++..+....++.....|......+.-.
T Consensus 157 ~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~~y~--- 233 (284)
T PRK12888 157 WSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGALWW--- 233 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH---
Confidence 45666777777788888999999999999999999999999999999998877776666666666665543322222
Q ss_pred HHHHHHHHHHHHHHHHccCCchhhHH-HHH
Q 039281 114 ISHCILASSLWLRARTVDLSSNTSTF-SFY 142 (165)
Q Consensus 114 ~~H~~l~~~l~~ra~~vdl~sk~~i~-sfY 142 (165)
.+-.+.+..+.+|.+.+|.+|.++.. +|+
T Consensus 234 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff 263 (284)
T PRK12888 234 IGLAITAGAFAYEHAIVSPTDLSRVNRAFF 263 (284)
T ss_pred HHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 23346667778888899999877653 544
No 28
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=99.26 E-value=4.8e-10 Score=94.98 Aligned_cols=93 Identities=15% Similarity=0.207 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHhhh--------hhh----------hhcccc-chhHHHHHHHHHHHHHHHHHHHHhccCChhhhh
Q 039281 5 PPLVLGVIVWFLFGTAYSV--------QKY----------VLGRPV-EITRSLMFATVFICCFCIASAFLKDLHDVDGDK 65 (165)
Q Consensus 5 ~pLl~~~~~slllgtaYS~--------~~~----------vlg~~~-~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr 65 (165)
+.......++.+++..||. +.. +.|... +-+.+.+++.....+.+.++++.||.||+|+||
T Consensus 104 ~~~~~l~~~~~~~~~~Ys~~lKr~~~~~~~~vg~~~G~~~~~g~~~~~~~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~ 183 (279)
T PRK09573 104 IYAFLIALLNSILLYLYAKDLKKTGLIGNLIVAYLTGLSFIFGGLAVFNVLRIIILFLCAFFSTWSREIVKDIEDIEGDL 183 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhhhhhhhhHH
Confidence 4445555567777889985 111 111100 002233445555566777899999999999999
Q ss_pred hcCCcchhHHhhHHHHHHHHHHHHHHHHHHHH
Q 039281 66 EFGIETLSVKLGKERVFWLCVYMLSIAYGAAV 97 (165)
Q Consensus 66 ~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i 97 (165)
+.|++|+|+++|+|++.+++............
T Consensus 184 ~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~ 215 (279)
T PRK09573 184 KENVITLPIKYGIKKSWYIAKILLILAIVLSP 215 (279)
T ss_pred HCCCccccHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987766655555443
No 29
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=99.26 E-value=2.5e-10 Score=97.26 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=82.5
Q ss_pred chHHHHHHHHHHHHHHHhhhh-------hhhhcc-------------ccchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQ-------KYVLGR-------------PVEITRSLMFATVFICCFCIASAFLKDLHDVDG 63 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~-------~~vlg~-------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG 63 (165)
+++......+++++...||.. +.+.|- ....+.+.+.+.....+.+.+.+++||++|+|+
T Consensus 108 ~~~~~~l~~~~~~~~~~Y~~~Kr~~~~~~~~~g~~~~~~~~~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~ 187 (281)
T TIGR01474 108 NPLTILLGVASLALVATYPFMKRITYWPQLVLGLAFGWGALMGWAAVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKED 187 (281)
T ss_pred hHHHHHHHHHHHHHHHHhchhcccccccHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 345555666778889999961 111111 123445555555666777888999999999999
Q ss_pred hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhHHH
Q 039281 64 DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFS 140 (165)
Q Consensus 64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i~s 140 (165)
||+.|+||+|+++|+|+..+.+.......+... +.+.... .+.... .+-.+....+.++...+|.+|+++..+
T Consensus 188 D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~y~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (281)
T TIGR01474 188 DIKIGVKSTALRFGDNTKPWLGGLYALMILLLA-LAGLIAG--LGPVYY-LGLAAAALLLIRQIATLDIRDPENCLK 260 (281)
T ss_pred HHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHH-HHHHHhC--CcHHHH-HHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 999999999999999987665544444344333 3333322 122222 223344556666677777766665433
No 30
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=99.24 E-value=3.3e-10 Score=97.70 Aligned_cols=101 Identities=12% Similarity=0.146 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039281 38 LMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHC 117 (165)
Q Consensus 38 ~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~ 117 (165)
.+++.....+-+.+.++++|.+|+|+||+.|+||+|+++|+|+..+++..+...........|.... + ..--.+-.
T Consensus 161 ~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~---~-~~y~~~~~ 236 (286)
T PRK12895 161 IYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR---T-LWYLAALI 236 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh---h-HHHHHHHH
Confidence 3455566677788899999999999999999999999999999988876666666666666664442 2 22235566
Q ss_pred HHHHHHHHHHHHccCCchhhH-HHHH
Q 039281 118 ILASSLWLRARTVDLSSNTST-FSFY 142 (165)
Q Consensus 118 ~l~~~l~~ra~~vdl~sk~~i-~sfY 142 (165)
+.+..+.+|.+.+|.+|.++. .+|+
T Consensus 237 ~~~~~l~~q~~~~~~~~~~~~~~~~F 262 (286)
T PRK12895 237 IIYTLVIYQHLIIDPRNPINKRMSFF 262 (286)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 777788889999999988877 4533
No 31
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.23 E-value=3.3e-10 Score=97.89 Aligned_cols=130 Identities=15% Similarity=0.127 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhh--------hhhcc-------------ccchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281 5 PPLVLGVIVWFLFGTAYSVQK--------YVLGR-------------PVEITRSLMFATVFICCFCIASAFLKDLHDVDG 63 (165)
Q Consensus 5 ~pLl~~~~~slllgtaYS~~~--------~vlg~-------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG 63 (165)
++.+.....+.+++..|+... ...|. ....+.+.+....+..+-+..++.+||++|+||
T Consensus 123 ~~~~~l~~~~~~~~~~Y~~~kr~~~~p~~~l~G~~~~~~~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~ 202 (297)
T PRK12871 123 LYVFVIMLYSYGIEAFYQVKKRNQKYPVAQLLGRTDFTLFPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLEN 202 (297)
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 445555667777888887622 12232 123445556666777777999999999999999
Q ss_pred hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhH
Q 039281 64 DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTST 138 (165)
Q Consensus 64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i 138 (165)
|++.|+||+|+++|+|++.+....+..+.+...+ +... ..+.......-.+.+..+.+|.+..+-++|++.
T Consensus 203 D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (297)
T PRK12871 203 DRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLR--ELGPIALYGFLAGFVLLAGANLYLWKEKSQDAG 273 (297)
T ss_pred HHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHH--HhhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 9999999999999999998766655555544333 2222 223232222224555667788888877777654
No 32
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=99.23 E-value=4.1e-10 Score=97.56 Aligned_cols=106 Identities=9% Similarity=0.071 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039281 37 SLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISH 116 (165)
Q Consensus 37 ~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H 116 (165)
+.+++.....+.+.+.+++||.||+|+||+.|+||+|+++| |++.+++..+...........|...... .... .+-
T Consensus 178 ~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg--~~y~-~~~ 253 (300)
T PRK13106 178 VPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLG--PIAI-AAT 253 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCc--HHHH-HHH
Confidence 33445555677788899999999999999999999999999 8888888877777777766666554322 1211 223
Q ss_pred HHHHHHHHHHHHHccCCchhhHHHHHHHHHH
Q 039281 117 CILASSLWLRARTVDLSSNTSTFSFYMFIWK 147 (165)
Q Consensus 117 ~~l~~~l~~ra~~vdl~sk~~i~sfY~fIWk 147 (165)
.+....+.++.+.+|.+ ++-.+.|.+..|-
T Consensus 254 ~~~~~~l~~~~~~~~~~-~~~~~~F~~n~~i 283 (300)
T PRK13106 254 ILHGLIMAYAYYLASKK-GDFGRAFYYNIYS 283 (300)
T ss_pred HHHHHHHHHHHHHhCCc-hHHHHHHHHccHH
Confidence 35556667788888877 6666777766653
No 33
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.19 E-value=8.2e-10 Score=93.32 Aligned_cols=85 Identities=20% Similarity=0.296 Sum_probs=57.2
Q ss_pred chHHHHHHHHHHHHHHHhhhh----h----h----------hhccc--cchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQ----K----Y----------VLGRP--VEITRSLMFATVFICCFCIASAFLKDLHDVDG 63 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~----~----~----------vlg~~--~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG 63 (165)
+|+.+....++...+..||.. . . +.|.. ...+...+. ..+..+....+++.||+||+||
T Consensus 103 ~~~~~~~~~~~~~~~~~Y~~~~k~~~~lg~~~vg~~~g~~~~~g~~a~~~~~~~~~~-~~~~fl~~~~~~~~~~~~D~e~ 181 (277)
T PRK12883 103 NIEAFLFALGAYVLMFLYAWKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYL-AICAFLVNVAREIMKDIEDIEG 181 (277)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHHHHHhccccHHHHH-HHHHHHHHHHHHHHhhhhhhcc
Confidence 455555566677889999961 0 0 11100 112232222 2334556678999999999999
Q ss_pred hhhcCCcchhHHhhHHHHHHHHHHHH
Q 039281 64 DKEFGIETLSVKLGKERVFWLCVYML 89 (165)
Q Consensus 64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll 89 (165)
||+.|++|+|+++|+|++.+++....
T Consensus 182 D~~~G~~Tlpv~~G~~~a~~~~~~~~ 207 (277)
T PRK12883 182 DKAKGAKTLPIIIGKKRAAYIGAIFG 207 (277)
T ss_pred HHHcCCcCcChHhcHHHHHHHHHHHH
Confidence 99999999999999999998765543
No 34
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.17 E-value=4.3e-10 Score=96.65 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=52.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281 34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVG 100 (165)
Q Consensus 34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g 100 (165)
.++..++.+. .+.+.++.++||+||+|+||+.|+||+|+++|+|++.+++......+-...+.++
T Consensus 165 ~~~~~l~~a~--~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 165 LPPLLAVAGG--WLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred CcHHHHHHHH--HHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443 5788899999999999999999999999999999999888877777666665544
No 35
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.13 E-value=2e-09 Score=93.61 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=85.7
Q ss_pred chHHHHHHHHHHHHHHHhhhh-------hhhhcc-------------ccchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281 4 SPPLVLGVIVWFLFGTAYSVQ-------KYVLGR-------------PVEITRSLMFATVFICCFCIASAFLKDLHDVDG 63 (165)
Q Consensus 4 s~pLl~~~~~slllgtaYS~~-------~~vlg~-------------~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG 63 (165)
+|+.+....+++++...|+.. +.+.|- ...++.+.+.+.....+-+...+.+++++|+|+
T Consensus 140 ~~~~~~l~~~~~~~~~~Y~~~KR~t~~~~~~~Gl~~~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~ 219 (314)
T PRK12878 140 NWFAIALGIASLAIVAAYPFMKRITWWPQFFLGLAFSWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKED 219 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence 455566666778888899761 111221 122344445554455666777788999999999
Q ss_pred hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHH
Q 039281 64 DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYM 143 (165)
Q Consensus 64 Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i~sfY~ 143 (165)
||+.|++|+|+++|+|++.+++........... +.+......+--.+.. ..+...+.+|.+++|.+++++-.+++
T Consensus 220 D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~F- 294 (314)
T PRK12878 220 DALIGVKSTARLFGDHTKTWLVLFYGLAVLLMG-LAFWLAGVPLLALLGL---LAAAAHLAWQIARLDIDDPDQCLRLF- 294 (314)
T ss_pred HHHcCCcccchHhchhhHHHHHHHHHHHHHHHH-HHHHHhcCcHHHHHHH---HHHHHHHHHHHHHcccCChHHHHHHH-
Confidence 999999999999999999988865555444333 2332222122112212 22233356778888888776533333
Q ss_pred HHHHHHHH
Q 039281 144 FIWKASDC 151 (165)
Q Consensus 144 fIWkLFy~ 151 (165)
-.+.+|.
T Consensus 295 -~~n~~~~ 301 (314)
T PRK12878 295 -KSNRDAG 301 (314)
T ss_pred -HHhHHHH
Confidence 3344443
No 36
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.12 E-value=2.2e-09 Score=92.18 Aligned_cols=111 Identities=12% Similarity=0.109 Sum_probs=73.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 039281 33 EITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLT 112 (165)
Q Consensus 33 ~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~ 112 (165)
..+.+.+++...+.+.+.+.+++|+.+|+|+|++.|++|+|+++|+|+..+++...... ......+|.... .+....
T Consensus 163 ~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~-~~~l~~~~~~~~--~~~~y~ 239 (290)
T PRK12870 163 HLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALT-VGFLAILGVLLE--LHLPFW 239 (290)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHH-HHHHHHHHHHhC--CcHHHH
Confidence 34556667777778889999999999999999999999999999999998877633322 222333343322 112211
Q ss_pred HHHHHHHHHHHHHHHHHc--cCCchh-hHHHHHHHHHH
Q 039281 113 IISHCILASSLWLRARTV--DLSSNT-STFSFYMFIWK 147 (165)
Q Consensus 113 ~~~H~~l~~~l~~ra~~v--dl~sk~-~i~sfY~fIWk 147 (165)
.+-.+....+.++.+++ |.+|++ ..+.|.+..|-
T Consensus 240 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~ 276 (290)
T PRK12870 240 -IGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWI 276 (290)
T ss_pred -HHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHH
Confidence 12234444566677777 777775 45556665553
No 37
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=99.11 E-value=3.7e-09 Score=90.91 Aligned_cols=98 Identities=14% Similarity=0.228 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039281 34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTI 113 (165)
Q Consensus 34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~ 113 (165)
++.+.+++...+.+-+.+.+++++++|.|+||+.|++|+|+++|+|++.+++.......+......+......+ ...+
T Consensus 160 ~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~ 237 (291)
T PRK12886 160 IELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP--WFLA 237 (291)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH--HHHH
Confidence 44555555555566677788999999999999999999999999999999887777777766665555432211 1111
Q ss_pred HHHHHHHHHHHHHHHHccCCc
Q 039281 114 ISHCILASSLWLRARTVDLSS 134 (165)
Q Consensus 114 ~~H~~l~~~l~~ra~~vdl~s 134 (165)
+-.+....+.++.+.++.+|
T Consensus 238 -~~~~~~~~~l~~~~~~~~~~ 257 (291)
T PRK12886 238 -GLAVTGILLLYEHWLLRGGD 257 (291)
T ss_pred -HHHHHHHHHHHHHHHhCCCC
Confidence 12233333335777777776
No 38
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=99.10 E-value=7.6e-09 Score=90.08 Aligned_cols=103 Identities=13% Similarity=0.122 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 039281 40 FATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCIL 119 (165)
Q Consensus 40 ~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l 119 (165)
+.+....+...+.+++++.+|+|+||+.|++|+|+++|+|++.+++..+..+..+..+.+|......+.-......-...
T Consensus 176 lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~~~y~~~~~~~~~ 255 (300)
T PRK12876 176 LWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKKIFYLCSLVPLTV 255 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 33444555556789999999999999999999999999999877777666666666655665543332211111111122
Q ss_pred HHHHHHHHHHccCCchhhHHHHH
Q 039281 120 ASSLWLRARTVDLSSNTSTFSFY 142 (165)
Q Consensus 120 ~~~l~~ra~~vdl~sk~~i~sfY 142 (165)
.....+|.+.+|-++++.-.+|+
T Consensus 256 ~l~~~~~~~~~~~~~~~~~~~~F 278 (300)
T PRK12876 256 ILKTIKHYSLIDKKKSTLEQKFF 278 (300)
T ss_pred HHHHHHHHHHcCCCchHHHHHHH
Confidence 22245665667665444444433
No 39
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=99.04 E-value=1.6e-08 Score=87.05 Aligned_cols=104 Identities=14% Similarity=0.154 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039281 34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTI 113 (165)
Q Consensus 34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~ 113 (165)
.+.+.+++...+.+-+.+.+++++++|+|+||+.|++|+|+++|+|++.++.........+.....+..... .....
T Consensus 165 ~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 241 (291)
T PRK12874 165 IPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHL---GLFAY 241 (291)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcc---hHHHH
Confidence 344455556666788888999999999999999999999999999999877655444433333333322211 11222
Q ss_pred HHHHHHHHHHHHHHHHccCCchhhHHH
Q 039281 114 ISHCILASSLWLRARTVDLSSNTSTFS 140 (165)
Q Consensus 114 ~~H~~l~~~l~~ra~~vdl~sk~~i~s 140 (165)
.+-.+.+..++++.+.++.+++++-..
T Consensus 242 ~~~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (291)
T PRK12874 242 LGVIVSALILLYEHYLVRKDFKKIDKA 268 (291)
T ss_pred HHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 344455566777777776555544333
No 40
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=99.04 E-value=9.5e-09 Score=87.52 Aligned_cols=109 Identities=12% Similarity=0.103 Sum_probs=68.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039281 34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTI 113 (165)
Q Consensus 34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~ 113 (165)
++.+.+++.....+........++++|+|+||+.|++|+|+++|.|++.+++........ .....+.... .+... .
T Consensus 160 ~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~y-~ 235 (282)
T PRK12848 160 VPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLA-LLAWAGWLLG--LGWAY-Y 235 (282)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHH-HHHHHHHHhc--CcHHH-H
Confidence 455555555555666667778888999999999999999999999998877644333322 2223333221 12221 1
Q ss_pred HHHHHHHHHHHHHHHHccCCchhhH-HHHHHHHH
Q 039281 114 ISHCILASSLWLRARTVDLSSNTST-FSFYMFIW 146 (165)
Q Consensus 114 ~~H~~l~~~l~~ra~~vdl~sk~~i-~sfY~fIW 146 (165)
.+-.+....+.++.+.+|.+++++. ..|++..|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~n~~ 269 (282)
T PRK12848 236 WGLLVAAALFVYQQKLIRDREREACFKAFLNNNW 269 (282)
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCcH
Confidence 2333555666777889998876644 45555433
No 41
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=98.81 E-value=2.2e-07 Score=79.17 Aligned_cols=59 Identities=8% Similarity=0.129 Sum_probs=46.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHH
Q 039281 33 EITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSI 91 (165)
Q Consensus 33 ~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~ 91 (165)
.++.+.++....+.+...+.....+.+|+|.||+.|+||+|+++|+|++.+........
T Consensus 156 ~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~ 214 (279)
T PRK12869 156 SLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNAL 214 (279)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHH
Confidence 34556666666767777777777788899999999999999999999998776555443
No 42
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=98.70 E-value=9.9e-07 Score=74.82 Aligned_cols=100 Identities=14% Similarity=0.051 Sum_probs=57.7
Q ss_pred HHHHhc--cCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039281 52 SAFLKD--LHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRART 129 (165)
Q Consensus 52 i~i~KD--i~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~ 129 (165)
....+| .+|.|.||+.|+||+|+++|+|++.+.+............+.+.... .+....+.+-.+.+..+.++.+.
T Consensus 172 ~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~~~~~~~~~~l~~~~~~ 249 (280)
T TIGR01473 172 PPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGG--TGWLYLIVATLLGALFLYLAFKF 249 (280)
T ss_pred HHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHH
Confidence 444444 68999999999999999999999887666554444444333333322 12222222233444455566666
Q ss_pred ccCC-chhhHHHHHHHHHHHHHHHHHHHHHHh
Q 039281 130 VDLS-SNTSTFSFYMFIWKASDCTYILNQIPH 160 (165)
Q Consensus 130 vdl~-sk~~i~sfY~fIWkLFy~EYll~P~~~ 160 (165)
+|.+ +++ ..+|.|+..-..+|+.+
T Consensus 250 ~~~~~~~~-------~~~~~f~~s~~~~~~~~ 274 (280)
T TIGR01473 250 YRDPTDRK-------KARKLFKFSLIYLALLF 274 (280)
T ss_pred hcCCCcHH-------HHHHHHHHHHHHHHHHH
Confidence 6655 322 24555555555555544
No 43
>PRK13592 ubiA prenyltransferase; Provisional
Probab=98.67 E-value=3.5e-07 Score=79.86 Aligned_cols=55 Identities=7% Similarity=0.010 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 39 MFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 39 ~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
+.+.....+.+.++|+.||+|| ||||+. .+|+|+++|+|++.+++..+..+..+.
T Consensus 178 ~~l~l~afl~~l~rEI~KdieD-~gd~~~-~~Tlpi~~G~kkA~~ia~~l~ii~v~~ 232 (299)
T PRK13592 178 VLLAFTMYFPSLIWEVCRKIRA-PKDETE-YVTYSKLFGYKKATRFIEVVTLLDILT 232 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC-CccccC-CeeechhccchhHHHHHHHHHHHHHHH
Confidence 4556677888999999999999 899975 999999999999999998887666554
No 44
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=98.63 E-value=1.4e-06 Score=75.69 Aligned_cols=105 Identities=9% Similarity=0.001 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 039281 39 MFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCI 118 (165)
Q Consensus 39 ~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~ 118 (165)
+++...+.+-+.+-+++++++|+|+||+.|++|+|+++|.+ +......+-.+.......+|...... .... .+-.+
T Consensus 173 l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~--~~y~-~~~~~ 248 (294)
T PRK12873 173 LFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVG--FIFW-PFWLI 248 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCc--HHHH-HHHHH
Confidence 33334556666678899999999999999999999999975 44554555555555555556554322 2221 23344
Q ss_pred HHHHHHHHHHHccCCc---hhhHHHHHHHHHH
Q 039281 119 LASSLWLRARTVDLSS---NTSTFSFYMFIWK 147 (165)
Q Consensus 119 l~~~l~~ra~~vdl~s---k~~i~sfY~fIWk 147 (165)
.+..+.+|.+.+|.++ ++....|.+..|-
T Consensus 249 ~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~ 280 (294)
T PRK12873 249 ASIGMQRDILKLFPEKQSIKTIGNHFSNQVIL 280 (294)
T ss_pred HHHHHHHHHHHhCcCcccHHHHHHHHHhccHH
Confidence 4566677888898876 5566888887773
No 45
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=98.30 E-value=1.3e-05 Score=68.85 Aligned_cols=64 Identities=11% Similarity=0.091 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHH
Q 039281 34 ITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAV 97 (165)
Q Consensus 34 ~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i 97 (165)
++.+.+++...+.+-.......+.++|.|.||+.|+||+|+++|.|++.+++.....+.-...+
T Consensus 165 ~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~ 228 (296)
T PRK04375 165 LSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSL 228 (296)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555444555556777778999999999999999988766555444443333
No 46
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=98.01 E-value=0.00035 Score=60.83 Aligned_cols=53 Identities=9% Similarity=0.170 Sum_probs=41.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHH
Q 039281 33 EITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLC 85 (165)
Q Consensus 33 ~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~ 85 (165)
..+...+++...+.+-.......++++|.|+|++.|++|+|++.|+|++.+..
T Consensus 167 ~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~ 219 (306)
T PRK13362 167 QFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHI 219 (306)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHH
Confidence 34555666666666666666677889999999999999999999999888643
No 47
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=97.28 E-value=0.00084 Score=58.07 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=54.1
Q ss_pred HHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 039281 47 CFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSK 109 (165)
Q Consensus 47 ~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~ 109 (165)
+-+=+|..-||-+|.|.||+.||-|+++.+|+..+..++..++..+|..-.+.+.-.+.++.-
T Consensus 240 lnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf~py~lf~i~~~~~si~~~l 302 (359)
T KOG4581|consen 240 LNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFALHCSISFAL 302 (359)
T ss_pred cchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567789999999999999999999999999999999999999999988888776544443
No 48
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=94.58 E-value=0.79 Score=39.70 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhhhhcCC-cchhH-HhhHHHHHHHHHHHHHHHHHHHH
Q 039281 40 FATVFICCFCIASAFLKDLHDVDGDKEFGI-ETLSV-KLGKERVFWLCVYMLSIAYGAAV 97 (165)
Q Consensus 40 ~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi-~Tlav-~lG~~~~~~l~~~ll~~~y~~~i 97 (165)
.......++..+.+++||.-|.|-|++.+- |.+|. ++.+|.+...+..++.++.+..+
T Consensus 58 ~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~ 117 (306)
T TIGR02056 58 CMLLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAF 117 (306)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHH
Confidence 334455677777889999999999987762 32322 35566666666555554444433
No 49
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=94.15 E-value=1.6 Score=36.70 Aligned_cols=51 Identities=12% Similarity=0.156 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhh---HHHHHHHHHHHHHHH
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLG---KERVFWLCVYMLSIA 92 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG---~~~~~~l~~~ll~~~ 92 (165)
...-..+...+-.++||.-|.|-|+++ .+.=|..-| ++.+...+..+..++
T Consensus 42 ~~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~is~~~a~~~~~~~~~~~ 95 (279)
T PRK12884 42 GFLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGRISRREALLLAILLFILG 95 (279)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 333445555667799999999999988 455555555 555655555444443
No 50
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=93.79 E-value=0.88 Score=38.77 Aligned_cols=33 Identities=21% Similarity=0.098 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhhhhcCC
Q 039281 37 SLMFATVFICCFCIASAFLKDLHDVDGDKEFGI 69 (165)
Q Consensus 37 ~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi 69 (165)
..............+...+||+.|.|=||++--
T Consensus 48 ~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r 80 (289)
T COG0382 48 LLLLAFLAFFLARSAGYVINDLADREIDRINPR 80 (289)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence 344444444566667779999999999999865
No 51
>PRK13595 ubiA prenyltransferase; Provisional
Probab=93.50 E-value=1.5 Score=38.45 Aligned_cols=74 Identities=18% Similarity=0.051 Sum_probs=43.4
Q ss_pred HHHHHHHHhhhhhhhhccccch-hHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhH---HhhHHHHHHHHHHH
Q 039281 13 VWFLFGTAYSVQKYVLGRPVEI-TRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSV---KLGKERVFWLCVYM 88 (165)
Q Consensus 13 ~slllgtaYS~~~~vlg~~~~~-~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav---~lG~~~~~~l~~~l 88 (165)
...++|..++ |....+ |..+.....|..-....+..+||.-|.|-|+++.-+ =++ ++.++.+..+...+
T Consensus 29 ~~~~~G~~~~------g~~~~~~~~~~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~~~~~ 101 (292)
T PRK13595 29 GTLVTGVWLT------GHLYTLDPGVLPLLLYLTLPFNLLIYGLNDLADRETDAASPRK-GGWQGARLSPGEVRPLLRAV 101 (292)
T ss_pred HHHHHHHHHh------cCcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCC-CCCCcCccCHHHHHHHHHHH
Confidence 5566677665 222333 233444455556666778899999999999865432 232 45566555555444
Q ss_pred HHHHH
Q 039281 89 LSIAY 93 (165)
Q Consensus 89 l~~~y 93 (165)
...+.
T Consensus 102 ~~~~~ 106 (292)
T PRK13595 102 LLLNA 106 (292)
T ss_pred HHHHH
Confidence 44443
No 52
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=91.49 E-value=1.8 Score=36.69 Aligned_cols=48 Identities=15% Similarity=-0.017 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhccCChhhhhhcCCcchhH---HhhHHHHHHHHHHHHHHH
Q 039281 44 FICCFCIASAFLKDLHDVDGDKEFGIETLSV---KLGKERVFWLCVYMLSIA 92 (165)
Q Consensus 44 f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav---~lG~~~~~~l~~~ll~~~ 92 (165)
-..++..+-+++||.-|.|-|++.+ ++=|+ ++-+|.+..++..+..++
T Consensus 46 ~~~l~~~~~n~~Nd~~D~~~D~~~~-~~Rpi~~G~is~~~a~~~~~~~~~~~ 96 (283)
T TIGR01476 46 AGPLGTGFSQSINDYFDRDVDAINE-PQRPIPSGIISLREVRWNWLVLTVAG 96 (283)
T ss_pred HHHHHHHHHHHHHhHhhhCcccCCC-CCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3344566677999999999999765 33332 344566665555444333
No 53
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=91.47 E-value=7 Score=32.97 Aligned_cols=48 Identities=10% Similarity=0.107 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhccCChhhhhhcCCcchhHHhh---HHHHHHHHHHHHHHHH
Q 039281 45 ICCFCIASAFLKDLHDVDGDKEFGIETLSVKLG---KERVFWLCVYMLSIAY 93 (165)
Q Consensus 45 ~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG---~~~~~~l~~~ll~~~y 93 (165)
..+...+-.++||.-|.|-||+.. +.=|..-| +|.+...+..+..+..
T Consensus 47 ~~l~~~~~~~~Nd~~D~~iD~~~~-~~Rpl~~G~is~~~a~~~~~~l~~~g~ 97 (276)
T PRK12882 47 VFLATGAGNAINDYFDREIDRINR-PDRPIPSGAVSPRGALAFSILLFAAGV 97 (276)
T ss_pred HHHHHHHHHHHHHHhhhccccccC-CCCCcCCCCcCHHHHHHHHHHHHHHHH
Confidence 344555566999999999999754 54454444 5666666555555443
No 54
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=90.53 E-value=2.1 Score=37.34 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=21.0
Q ss_pred HhccCChhhhhhcCCcchhHH---hhHHHHHHHHHH
Q 039281 55 LKDLHDVDGDKEFGIETLSVK---LGKERVFWLCVY 87 (165)
Q Consensus 55 ~KDi~DieGDr~~Gi~Tlav~---lG~~~~~~l~~~ 87 (165)
+||..|.|-||.+ .++-|+- +-+|.+..+...
T Consensus 72 iNd~~D~~iD~in-kp~rPiasG~ls~~~a~~~~~~ 106 (308)
T PRK12887 72 LNQLTDIEIDRIN-KPHLPLAAGEFSRRQGQRIVII 106 (308)
T ss_pred HhhhhhHHHHhcC-CCCCCcCCcccCHHHHHHHHHH
Confidence 9999999999964 4666653 344444444443
No 55
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=89.72 E-value=5.5 Score=33.43 Aligned_cols=29 Identities=14% Similarity=0.052 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhhhcCC
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGDKEFGI 69 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGDr~~Gi 69 (165)
......+...+...+||.-|.|-|+..+-
T Consensus 41 ~~~~~~~~~~~~~~~N~~~D~~~D~~n~~ 69 (285)
T PRK12872 41 LLLITFLIAAAVYIINYLTDLEEDIINKP 69 (285)
T ss_pred HHHHHHHHHHHHHHhhhhcCCchhhcCCC
Confidence 33344566667889999999999987543
No 56
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.58 E-value=4.1 Score=34.66 Aligned_cols=81 Identities=21% Similarity=0.187 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcC---CcchhH-HhhHHHH
Q 039281 6 PLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFG---IETLSV-KLGKERV 81 (165)
Q Consensus 6 pLl~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~G---i~Tlav-~lG~~~~ 81 (165)
...+....+.+.|.+.+.+. ....+ ........-..+...+-.++||.-|.|-||+.. -|.+|. ++-+|.+
T Consensus 20 ~~~~l~~~~~~~g~~la~~~----~~~~~-~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a 94 (285)
T PRK12847 20 IGILLVFFPTLFGLLLASHS----LLPDI-SLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQA 94 (285)
T ss_pred HHHHHHHHHHHHHHHHHhCc----cCCcH-HHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHH
Confidence 33444556666666654321 11111 112223333345566667999999999998633 233333 4555666
Q ss_pred HHHHHHHHHH
Q 039281 82 FWLCVYMLSI 91 (165)
Q Consensus 82 ~~l~~~ll~~ 91 (165)
..++..++.+
T Consensus 95 ~~~~~~l~~~ 104 (285)
T PRK12847 95 LILLFILLLI 104 (285)
T ss_pred HHHHHHHHHH
Confidence 6555544433
No 57
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=89.47 E-value=4.4 Score=32.66 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccCChhhhhhc
Q 039281 46 CCFCIASAFLKDLHDVDGDKEF 67 (165)
Q Consensus 46 ~~f~~~i~i~KDi~DieGDr~~ 67 (165)
.+........||..|.|-||..
T Consensus 33 ~~~~~~~~~~Nd~~D~~~D~~~ 54 (257)
T PF01040_consen 33 FLLQLAVYLLNDYFDYEEDRIH 54 (257)
T ss_pred HHHHHHHHHhhChhhhhcCccc
Confidence 3666778899999999999995
No 58
>PLN02776 prenyltransferase
Probab=89.40 E-value=16 Score=32.84 Aligned_cols=94 Identities=14% Similarity=-0.063 Sum_probs=47.3
Q ss_pred CChhhhhhcCCcchhHHh--hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchh
Q 039281 59 HDVDGDKEFGIETLSVKL--GKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNT 136 (165)
Q Consensus 59 ~DieGDr~~Gi~Tlav~l--G~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~ 136 (165)
.|.|-|++.|++.+|+.- |++.+..+......+.-...+..+.-.. .....+.+=.+-+..+++.-+-+..+|++
T Consensus 174 ~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~---~~~~~~~a~~l~~~~l~~~~~~~~~~~~~ 250 (341)
T PLN02776 174 MCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVT---SSPFALEAALLTAYLAASAASFYREPTNA 250 (341)
T ss_pred HhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 345578899999999854 5676666554444433322222221111 12222333333344444444445333322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039281 137 STFSFYMFIWKASDCTYILNQIPHAS 162 (165)
Q Consensus 137 ~i~sfY~fIWkLFy~EYll~P~~~~~ 162 (165)
...|+|+..-.-+|..+..
T Consensus 251 -------~ar~~F~~Sl~yL~~l~~~ 269 (341)
T PLN02776 251 -------NARKMFHGSLLYLPAFMAL 269 (341)
T ss_pred -------HHHHHHHHHHHHHHHHHHH
Confidence 2466677666666666543
No 59
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=89.23 E-value=11 Score=32.42 Aligned_cols=82 Identities=12% Similarity=0.041 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCC------cchhH-HhhHHH
Q 039281 8 VLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGI------ETLSV-KLGKER 80 (165)
Q Consensus 8 l~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi------~Tlav-~lG~~~ 80 (165)
+.+-.++..+|+++.-.. ++...+..- .....-..+...+-+.+||..|.|-|+...- |+++. ++-+|+
T Consensus 16 l~~s~~~v~lG~a~a~~~---~~~f~~~~~-ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~ 91 (296)
T PRK05951 16 FVMTAIVAFFSIAYGYYL---FRSFDPLLG-ALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGH 91 (296)
T ss_pred HHHHHHHHHHHHHHHHHh---cCCcCHHHH-HHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHH
Confidence 344456777888886322 122333222 2222333455566779999999555544432 33322 355677
Q ss_pred HHHHHHHHHHHHH
Q 039281 81 VFWLCVYMLSIAY 93 (165)
Q Consensus 81 ~~~l~~~ll~~~y 93 (165)
+.+.+..+..++.
T Consensus 92 ~~~~~~~~~~ia~ 104 (296)
T PRK05951 92 LRVLGIALGAIAL 104 (296)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666555443
No 60
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=88.93 E-value=4.6 Score=34.22 Aligned_cols=51 Identities=10% Similarity=0.266 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHhccCChhhhhhcC-CcchhH-HhhHHHHHHHHHHHHHHHH
Q 039281 43 VFICCFCIASAFLKDLHDVDGDKEFG-IETLSV-KLGKERVFWLCVYMLSIAY 93 (165)
Q Consensus 43 ~f~~~f~~~i~i~KDi~DieGDr~~G-i~Tlav-~lG~~~~~~l~~~ll~~~y 93 (165)
.-..+...+-.++||.-|.|-||+.. -|.+|. ++-+|.+...+..+..++.
T Consensus 44 l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~ 96 (279)
T PRK09573 44 LVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGL 96 (279)
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHH
Confidence 33445566667999999999999764 233332 4556666666655544433
No 61
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=88.90 E-value=4.2 Score=34.43 Aligned_cols=80 Identities=10% Similarity=0.056 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcC---CcchhH-HhhHHHHH
Q 039281 7 LVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFG---IETLSV-KLGKERVF 82 (165)
Q Consensus 7 Ll~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~G---i~Tlav-~lG~~~~~ 82 (165)
.......+.+.|.+.+.+. ....+ ........-..+...+-..+||.-|.|-|++.. -|.+|. ++-+|.+.
T Consensus 11 ~~~~~~~~~~~g~~la~~~----~~~~~-~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~ 85 (280)
T TIGR01473 11 IISLLLITAFAGMWLAPGG----ALVNP-PLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREAL 85 (280)
T ss_pred HHHHHHHHHHHHHHHhCCC----CCCCH-HHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHH
Confidence 3344445566666655321 11122 122333333445566667999999999999743 344433 45566666
Q ss_pred HHHHHHHHH
Q 039281 83 WLCVYMLSI 91 (165)
Q Consensus 83 ~l~~~ll~~ 91 (165)
..+..++.+
T Consensus 86 ~~~~~~~~~ 94 (280)
T TIGR01473 86 AFGLLLGVL 94 (280)
T ss_pred HHHHHHHHH
Confidence 665544443
No 62
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=88.54 E-value=8.5 Score=33.27 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=15.2
Q ss_pred HHhccCChhhhhhcCCcc
Q 039281 54 FLKDLHDVDGDKEFGIET 71 (165)
Q Consensus 54 i~KDi~DieGDr~~Gi~T 71 (165)
.+||.-|.|-||+...|.
T Consensus 63 ~iND~~D~D~Dr~~prk~ 80 (282)
T PRK12875 63 GVNDVFDADTDELNPKKD 80 (282)
T ss_pred cchhhhhhhccccCCCcc
Confidence 379999999999887665
No 63
>PLN00012 chlorophyll synthetase; Provisional
Probab=88.26 E-value=15 Score=33.22 Aligned_cols=46 Identities=11% Similarity=-0.047 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhccCChhhhhhcCCcchhHH---hhHHHHHHHHHHHHHHH
Q 039281 46 CCFCIASAFLKDLHDVDGDKEFGIETLSVK---LGKERVFWLCVYMLSIA 92 (165)
Q Consensus 46 ~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~---lG~~~~~~l~~~ll~~~ 92 (165)
.+...+-.++||.-|.|-|++.+ +.=|+. +.++.+......++..+
T Consensus 133 ~L~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~Is~~~al~~~~~l~~~~ 181 (375)
T PLN00012 133 PFLTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLGG 181 (375)
T ss_pred HHHHHHHHHHHCeecHhhhccCC-CCCCcCCCccCHHHHHHHHHHHHHHH
Confidence 44455567999999999998875 333433 33555555444444333
No 64
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=88.12 E-value=5.5 Score=33.62 Aligned_cols=41 Identities=12% Similarity=0.319 Sum_probs=26.7
Q ss_pred HHHHHHHhccCChhhhhhcCCcchhHH---hhHHHHHHHHHHHHH
Q 039281 49 CIASAFLKDLHDVDGDKEFGIETLSVK---LGKERVFWLCVYMLS 90 (165)
Q Consensus 49 ~~~i~i~KDi~DieGDr~~Gi~Tlav~---lG~~~~~~l~~~ll~ 90 (165)
..+-.++||.-|.|-||.++ ++=|+- +-++.+...+..+..
T Consensus 50 ~~a~~~~Nd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~ 93 (277)
T PRK12883 50 CSGGNTINDYFDYEIDKINR-PNRPLPRGAMSRKAALYYSLLLFA 93 (277)
T ss_pred HHHHhHHHhhhhHhccccCC-CCCCCCCCccCHHHHHHHHHHHHH
Confidence 35677999999999999754 444433 445556555544433
No 65
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=87.90 E-value=10 Score=32.34 Aligned_cols=79 Identities=11% Similarity=-0.016 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcC---CcchhH-HhhHHHHH
Q 039281 7 LVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFG---IETLSV-KLGKERVF 82 (165)
Q Consensus 7 Ll~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~G---i~Tlav-~lG~~~~~ 82 (165)
..+....+.+.|.+.+.+ +...+ ........-..+...+-..+||.-|.|-||+.. -|.+|. +..+|.+.
T Consensus 13 ~~~~~~~~~~~g~~la~~-----~~~~~-~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~ 86 (279)
T PRK12869 13 VIWLLDLAAVAGYFLAAK-----HGVSW-LPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEAL 86 (279)
T ss_pred HHHHHHHHHHHHHHHhcc-----CCCCH-HHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHH
Confidence 444555555666554422 11111 123333334445566677999999999999854 244443 45666666
Q ss_pred HHHHHHHHH
Q 039281 83 WLCVYMLSI 91 (165)
Q Consensus 83 ~l~~~ll~~ 91 (165)
.....++.+
T Consensus 87 ~~~~~~~~~ 95 (279)
T PRK12869 87 AVGSALSAL 95 (279)
T ss_pred HHHHHHHHH
Confidence 655544333
No 66
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=87.62 E-value=8.2 Score=33.70 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhccCChhhhhhcC---Ccchh-HHhhHHHHHHHHHHHHHHHHHH
Q 039281 46 CCFCIASAFLKDLHDVDGDKEFG---IETLS-VKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 46 ~~f~~~i~i~KDi~DieGDr~~G---i~Tla-v~lG~~~~~~l~~~ll~~~y~~ 95 (165)
++.+.+..++||+-|.|=||++. -|-+| =++.++.+...+..++.++.+.
T Consensus 56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~l 109 (295)
T PRK12324 56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLAL 109 (295)
T ss_pred HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 44556677999999999999962 23332 2456666666666555554433
No 67
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=86.73 E-value=4 Score=35.45 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=29.7
Q ss_pred HHHHHHHHHhccCChhhhhhcC-Ccchh-HHhhHHHHHHHHHHHHHHHH
Q 039281 47 CFCIASAFLKDLHDVDGDKEFG-IETLS-VKLGKERVFWLCVYMLSIAY 93 (165)
Q Consensus 47 ~f~~~i~i~KDi~DieGDr~~G-i~Tla-v~lG~~~~~~l~~~ll~~~y 93 (165)
+...+..++||.-|.|-||+.+ -|.+| =++.++.+...+..++.++.
T Consensus 76 l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~ 124 (314)
T PRK07566 76 LLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 3556667999999999999754 23222 24556666666555544433
No 68
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=85.74 E-value=22 Score=30.64 Aligned_cols=88 Identities=20% Similarity=0.232 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHH-HHHHHHHHHHHHHHhccCChhh--hhhcCCcchhHHhhHHHH
Q 039281 5 PPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFA-TVFICCFCIASAFLKDLHDVDG--DKEFGIETLSVKLGKERV 81 (165)
Q Consensus 5 ~pLl~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~-~~f~~~f~~~i~i~KDi~DieG--Dr~~Gi~Tlav~lG~~~~ 81 (165)
|+-+.+-.+..++|++++-.. ++ .+++....+ ...+..+-.+.+..||..|-+- |++.-.+.......+|.+
T Consensus 8 p~tl~~s~~pv~lG~alA~~~---~~--~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~~~~~~~~~~~~v 82 (285)
T TIGR02235 8 PPLYSVAVMPILVGTAVAWGQ---GG--VFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDRFKLHSIVNLTGSRSLV 82 (285)
T ss_pred hhHHHHHHHHHHHHHHHHHHc---CC--CcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccCCcccccCcHHHH
Confidence 344555567889999998432 22 333333222 2334556667789999999765 664211111111124555
Q ss_pred HHHHHHHHHHHHHHHH
Q 039281 82 FWLCVYMLSIAYGAAV 97 (165)
Q Consensus 82 ~~l~~~ll~~~y~~~i 97 (165)
.+.+..++.++....+
T Consensus 83 ~~~~~~~~~ia~~~g~ 98 (285)
T TIGR02235 83 FWLANFFLLIGLVGIA 98 (285)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555444444333
No 69
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=85.54 E-value=15 Score=31.52 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhccCChhhhhhcC---Ccchh-HHhhHHHHHHHHHHHHHH
Q 039281 46 CCFCIASAFLKDLHDVDGDKEFG---IETLS-VKLGKERVFWLCVYMLSI 91 (165)
Q Consensus 46 ~~f~~~i~i~KDi~DieGDr~~G---i~Tla-v~lG~~~~~~l~~~ll~~ 91 (165)
.+...+-.++||+-|.|=||+.. -|.+| =++.+|.+...+..+..+
T Consensus 54 ~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~ 103 (296)
T PRK04375 54 ALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVL 103 (296)
T ss_pred HHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 34455556999999999999853 23333 345667776665554433
No 70
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=84.91 E-value=25 Score=31.14 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=31.8
Q ss_pred HHHHhccCChhhhhhcCCcchhH---HhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281 52 SAFLKDLHDVDGDKEFGIETLSV---KLGKERVFWLCVYMLSIAYGAAVVVG 100 (165)
Q Consensus 52 i~i~KDi~DieGDr~~Gi~Tlav---~lG~~~~~~l~~~ll~~~y~~~i~~g 100 (165)
-.++||.-|.|-|+..+ ||=|+ ++-+|.+...+..+..++.+.++.++
T Consensus 66 ~~~iND~~D~~~D~~n~-rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~ 116 (331)
T PRK12392 66 SQSVNDYFDLELDRVNE-PTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLG 116 (331)
T ss_pred HhHHhcceeecccccCC-CCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999754 44443 44467777777666666555444443
No 71
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=84.86 E-value=2.6 Score=35.76 Aligned_cols=47 Identities=11% Similarity=-0.007 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhhhc---CCcchhH-HhhHHHHHHHHHH
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGDKEF---GIETLSV-KLGKERVFWLCVY 87 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGDr~~---Gi~Tlav-~lG~~~~~~l~~~ 87 (165)
...-..+...+-.++||.-|.|-||+. .-|.+|. ++.+|.+...+..
T Consensus 41 ~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~ 91 (282)
T TIGR01475 41 ILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIIL 91 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHH
Confidence 333445666777799999999999986 2344443 4556666655543
No 72
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=83.71 E-value=21 Score=31.15 Aligned_cols=82 Identities=22% Similarity=0.229 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHH-HHHHHHHHHHHHHHHhccCChh--hhhhcCCcchhHH--hhHHH
Q 039281 6 PLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMF-ATVFICCFCIASAFLKDLHDVD--GDKEFGIETLSVK--LGKER 80 (165)
Q Consensus 6 pLl~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~-~~~f~~~f~~~i~i~KDi~Die--GDr~~Gi~Tlav~--lG~~~ 80 (165)
+-+.+-.+..++|++++-.. ++ .+++...+ ......++-.+.+..||..|-+ -|++.- +. +++ ..+|.
T Consensus 22 ~tl~asl~pv~lG~a~a~~~---~~--~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~-~~-~~~~~~~~~~ 94 (304)
T PRK07419 22 PMYSVAIMPILVGTAWALGE---TG--VFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKNKF-HS-VVNLTGNKSL 94 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHc---CC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccc-cC-cccccCcHHH
Confidence 44455567889999998432 22 33333322 2234445566678999999988 566411 11 112 13666
Q ss_pred HHHHHHHHHHHHHH
Q 039281 81 VFWLCVYMLSIAYG 94 (165)
Q Consensus 81 ~~~l~~~ll~~~y~ 94 (165)
+.+++..++.++-+
T Consensus 95 v~~~~~~~~~~a~~ 108 (304)
T PRK07419 95 VFWLANLFLLLGLL 108 (304)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666665555443
No 73
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=83.20 E-value=20 Score=30.89 Aligned_cols=44 Identities=9% Similarity=-0.071 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhccCChhhhhhcC---CcchhH-HhhHHHHHHHHH
Q 039281 43 VFICCFCIASAFLKDLHDVDGDKEFG---IETLSV-KLGKERVFWLCV 86 (165)
Q Consensus 43 ~f~~~f~~~i~i~KDi~DieGDr~~G---i~Tlav-~lG~~~~~~l~~ 86 (165)
.-+.+...+-..+||.-|.|-|++.. -|.+|. ++.+|.+.....
T Consensus 46 l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~ 93 (284)
T PRK12888 46 VAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGAL 93 (284)
T ss_pred HHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 33344555566999999999999874 344432 334455544443
No 74
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=81.95 E-value=34 Score=29.81 Aligned_cols=48 Identities=8% Similarity=-0.002 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhccCChhhhhhcCC---cchhH-HhhHHHHHHHHHHHHHH
Q 039281 44 FICCFCIASAFLKDLHDVDGDKEFGI---ETLSV-KLGKERVFWLCVYMLSI 91 (165)
Q Consensus 44 f~~~f~~~i~i~KDi~DieGDr~~Gi---~Tlav-~lG~~~~~~l~~~ll~~ 91 (165)
-..+.+.+-..+||.-|.|=||+... |-+|. |+.++.+..++..+..+
T Consensus 55 g~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~ 106 (306)
T PRK13362 55 GLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVA 106 (306)
T ss_pred HHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 34455667779999999999987543 44432 44566666665544433
No 75
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=81.94 E-value=14 Score=31.46 Aligned_cols=46 Identities=13% Similarity=0.156 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhccCChhhhhhcCC-cchhH---HhhHHHHHHHHHHHHHH
Q 039281 46 CCFCIASAFLKDLHDVDGDKEFGI-ETLSV---KLGKERVFWLCVYMLSI 91 (165)
Q Consensus 46 ~~f~~~i~i~KDi~DieGDr~~Gi-~Tlav---~lG~~~~~~l~~~ll~~ 91 (165)
.+...+-...||.-|.|-||+... +.=|+ ++.++.+......+..+
T Consensus 50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~ 99 (281)
T TIGR01474 50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLV 99 (281)
T ss_pred HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 344556679999999999986542 12232 34455565555544433
No 76
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=79.06 E-value=12 Score=32.70 Aligned_cols=43 Identities=14% Similarity=0.040 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHhccCChhhhhhcC---CcchhH-HhhHHHHHHHH
Q 039281 43 VFICCFCIASAFLKDLHDVDGDKEFG---IETLSV-KLGKERVFWLC 85 (165)
Q Consensus 43 ~f~~~f~~~i~i~KDi~DieGDr~~G---i~Tlav-~lG~~~~~~l~ 85 (165)
.-+.+...+-..+||+-|.|=|++.. -|-+|. ++-++.+..+.
T Consensus 56 lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~ 102 (300)
T PRK13106 56 LALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALI 102 (300)
T ss_pred HHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHH
Confidence 33345555666999999999999873 233332 34555555444
No 77
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=78.88 E-value=42 Score=28.95 Aligned_cols=85 Identities=14% Similarity=0.042 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhhhhhhhccccchhHHHH-HHHHHHHHHHHHHHHHhccCChhh-----hhhcCCcchhH-HhhHHHHH
Q 039281 10 GVIVWFLFGTAYSVQKYVLGRPVEITRSLM-FATVFICCFCIASAFLKDLHDVDG-----DKEFGIETLSV-KLGKERVF 82 (165)
Q Consensus 10 ~~~~slllgtaYS~~~~vlg~~~~~~~~~~-~~~~f~~~f~~~i~i~KDi~DieG-----Dr~~Gi~Tlav-~lG~~~~~ 82 (165)
+-.+..++|++++... | .+++... .....+.++..+.++.||.-|-+- ||..+.|.++- ++-+|++.
T Consensus 7 ~s~~pv~lG~ala~~~---~---~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~ 80 (284)
T TIGR00751 7 LAIAPIVAGTALAAWL---H---AFVWLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVK 80 (284)
T ss_pred HHHHHHHHHHHHHHHc---C---CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHH
Confidence 4456788999987432 2 3344332 233334566777889999999743 34334454432 34457777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039281 83 WLCVYMLSIAYGAAVVVG 100 (165)
Q Consensus 83 ~l~~~ll~~~y~~~i~~g 100 (165)
+++..++.++.+..+...
T Consensus 81 ~~~~~~~~~a~~~Gi~l~ 98 (284)
T TIGR00751 81 TALITSVALGALSGLVLA 98 (284)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777776666655555443
No 78
>PRK13592 ubiA prenyltransferase; Provisional
Probab=78.49 E-value=48 Score=29.39 Aligned_cols=50 Identities=12% Similarity=0.236 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhccCChhhhhhcCC-cchhH-HhhHHHHHHHHHHHHHHHHH
Q 039281 45 ICCFCIASAFLKDLHDVDGDKEFGI-ETLSV-KLGKERVFWLCVYMLSIAYG 94 (165)
Q Consensus 45 ~~~f~~~i~i~KDi~DieGDr~~Gi-~Tlav-~lG~~~~~~l~~~ll~~~y~ 94 (165)
+.+++.+-.++||..|.|=||.+.= |-+|- |.-+|.+.+.+..+..+...
T Consensus 55 vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~ 106 (299)
T PRK13592 55 VFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVL 106 (299)
T ss_pred HHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHH
Confidence 3455566789999999999988642 22221 34456666666666444433
No 79
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=78.24 E-value=4 Score=36.40 Aligned_cols=90 Identities=14% Similarity=0.165 Sum_probs=56.9
Q ss_pred HHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 039281 54 FLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLS 133 (165)
Q Consensus 54 i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~ 133 (165)
-+---+|-+-|-+.|+++-+.|+|.+.=.|++..- ..-....-.+|..+-..|.--. . -.+.+.=|-+|-.+||+.
T Consensus 242 TIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~-a~~ia~La~aG~~s~q~~pyy~-~--lg~~~~~L~~~i~~vdiD 317 (353)
T KOG1381|consen 242 TIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFG-AAQIASLAAAGIASDQTWPYYA-A--LGAVAARLGSQIYKVDID 317 (353)
T ss_pred hhhhcccchhhhHhcchhhhhhcCCCCchHHhhhh-HHHHHHHHHhhhccCCCchHHH-H--HHHHHHHHHhheeeeecC
Confidence 33446899999999999999999999777766432 2222223334666555552222 1 334455566788899999
Q ss_pred chh-hHHHHHHHHHH
Q 039281 134 SNT-STFSFYMFIWK 147 (165)
Q Consensus 134 sk~-~i~sfY~fIWk 147 (165)
|+. ....|=..+|-
T Consensus 318 np~dC~k~f~sN~nt 332 (353)
T KOG1381|consen 318 NPSDCWKKFKSNSNT 332 (353)
T ss_pred ChHHHHHHHHhcCcc
Confidence 865 44455455554
No 80
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=77.79 E-value=48 Score=29.01 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHH-HHHHHHHHHHHhccCChhhhhhc-----CCcchh-HHhhHHH
Q 039281 8 VLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVF-ICCFCIASAFLKDLHDVDGDKEF-----GIETLS-VKLGKER 80 (165)
Q Consensus 8 l~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f-~~~f~~~i~i~KDi~DieGDr~~-----Gi~Tla-v~lG~~~ 80 (165)
+.+-.++.++|++++... ++ .+++...+++.. +.++..+.++.||..|-|-|+.. +-|.++ -.+-+|+
T Consensus 15 l~~s~~pvllG~a~a~~~---~~--~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~ 89 (317)
T PRK13387 15 KIASFFPVILGTLFSLYV---AK--IFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRN 89 (317)
T ss_pred HHHHHHHHHHHHHHHHHh---CC--CccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHH
Confidence 445567889999988422 22 333333222222 23357778899999998765443 223222 2344566
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039281 81 VFWLCVYMLSIAYGAAV 97 (165)
Q Consensus 81 ~~~l~~~ll~~~y~~~i 97 (165)
+.+.+..++.++.+..+
T Consensus 90 v~~~~~~~~~ia~~~Gl 106 (317)
T PRK13387 90 VLTVILLMYVVAAILGV 106 (317)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776666655555444
No 81
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=75.98 E-value=8.6 Score=33.27 Aligned_cols=44 Identities=20% Similarity=0.046 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhccCChhhhhhcCC-cchhHHhh---HHHHHHHHHHHH
Q 039281 46 CCFCIASAFLKDLHDVDGDKEFGI-ETLSVKLG---KERVFWLCVYML 89 (165)
Q Consensus 46 ~~f~~~i~i~KDi~DieGDr~~Gi-~Tlav~lG---~~~~~~l~~~ll 89 (165)
.+...+-..+||+-|.|=||+... +.=|.--| ++.+..+...++
T Consensus 55 ~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~ 102 (289)
T PLN02809 55 LLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQL 102 (289)
T ss_pred HHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 445555669999999999998543 34555445 454544444333
No 82
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=73.74 E-value=18 Score=31.46 Aligned_cols=47 Identities=6% Similarity=0.000 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhccCChhhhhhcCC---cchh-HHhhHHHHHHHHHHHHHHH
Q 039281 46 CCFCIASAFLKDLHDVDGDKEFGI---ETLS-VKLGKERVFWLCVYMLSIA 92 (165)
Q Consensus 46 ~~f~~~i~i~KDi~DieGDr~~Gi---~Tla-v~lG~~~~~~l~~~ll~~~ 92 (165)
.+...+-..+||+-|.|=||+... |-+| =++-++.+......++.+.
T Consensus 47 ~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~ 97 (286)
T PRK12895 47 VSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIF 97 (286)
T ss_pred HHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 344555569999999999988722 2222 2445555655555444443
No 83
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=73.65 E-value=39 Score=30.06 Aligned_cols=90 Identities=16% Similarity=0.194 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCCh------hhhhhcCCcchhHHhhHHH
Q 039281 7 LVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDV------DGDKEFGIETLSVKLGKER 80 (165)
Q Consensus 7 Ll~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~Di------eGDr~~Gi~Tlav~lG~~~ 80 (165)
-+-.-..+.+.|++++... +....+.+.++++.+ +.++-...+..||--|- |||...+.+-+-++=+.|+
T Consensus 19 Tl~aai~Pv~~G~a~A~~~---~~~f~~~~~ll~Li~-~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~ 94 (303)
T COG1575 19 TLPAAIAPVIVGTALAFWY---GKSFNLLVALLALIA-AILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKP 94 (303)
T ss_pred chHHHHHHHHHHHHHHHHH---ccchHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCH
Confidence 3445567888899888533 223444444433333 34556667788887653 3445555555655555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 039281 81 VFWLCVYMLSIAYGAAVVVGAS 102 (165)
Q Consensus 81 ~~~l~~~ll~~~y~~~i~~g~~ 102 (165)
...+... ...|.+..++|..
T Consensus 95 ~~~l~l~--l~~~~g~~llg~~ 114 (303)
T COG1575 95 ALILSLA--LFLLAGLALLGVI 114 (303)
T ss_pred HHHHHHH--HHHHHHHHHHHHH
Confidence 4443333 3344444444444
No 84
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=70.20 E-value=70 Score=27.48 Aligned_cols=46 Identities=20% Similarity=0.178 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhccCChhhhhhcCC---cchh-HHhhHHHHHHHHHHHHHH
Q 039281 46 CCFCIASAFLKDLHDVDGDKEFGI---ETLS-VKLGKERVFWLCVYMLSI 91 (165)
Q Consensus 46 ~~f~~~i~i~KDi~DieGDr~~Gi---~Tla-v~lG~~~~~~l~~~ll~~ 91 (165)
.+...+-.++||+-|.|=||+... |.+| =++.++.+......+..+
T Consensus 56 ~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~ 105 (290)
T PRK12870 56 LATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLC 105 (290)
T ss_pred HHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHH
Confidence 345566679999999999976432 3332 234455555544444433
No 85
>PLN02776 prenyltransferase
Probab=69.85 E-value=84 Score=28.22 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhhhcCC---cch-hHHhhHHHHHHHHHHHHH
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGDKEFGI---ETL-SVKLGKERVFWLCVYMLS 90 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGDr~~Gi---~Tl-av~lG~~~~~~l~~~ll~ 90 (165)
.+.-+.+...+-+.+||+-|.|=|++... |-+ +=|+.++.+...+..+..
T Consensus 34 ~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~ 87 (341)
T PLN02776 34 TCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGA 87 (341)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 33444555556669999999999988543 222 234556666555444433
No 86
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=69.41 E-value=9.2 Score=30.71 Aligned_cols=39 Identities=36% Similarity=0.370 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhccCChhhhh----------hcCCcchhHHhhHHHHH
Q 039281 44 FICCFCIASAFLKDLHDVDGDK----------EFGIETLSVKLGKERVF 82 (165)
Q Consensus 44 f~~~f~~~i~i~KDi~DieGDr----------~~Gi~Tlav~lG~~~~~ 82 (165)
+..-+..+--+.+|+.|+.+|. +.|..|+|....++...
T Consensus 154 ~~~~lG~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~ 202 (236)
T cd00867 154 YGRALGLAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAA 202 (236)
T ss_pred HHHHHHHHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHH
Confidence 3344444455999999999998 89999999999844443
No 87
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=68.83 E-value=71 Score=27.91 Aligned_cols=27 Identities=22% Similarity=0.041 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhhhc
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGDKEF 67 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGDr~~ 67 (165)
...-..+...+-..+||.-|.|-|++.
T Consensus 77 ~~l~~~l~~~a~~~~Nd~~Dr~iD~~~ 103 (314)
T PRK12878 77 FFVGAIAMRGAGCTYNDIVDRDIDAKV 103 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 333334555566799999999999864
No 88
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=68.80 E-value=61 Score=30.33 Aligned_cols=133 Identities=22% Similarity=0.315 Sum_probs=80.5
Q ss_pred cchHHHHHHHHHHHHHHHhhh--------hhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhH
Q 039281 3 RSPPLVLGVIVWFLFGTAYSV--------QKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSV 74 (165)
Q Consensus 3 ~s~pLl~~~~~slllgtaYS~--------~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav 74 (165)
+..|++..++.-++.++++.+ .++++|++...+....+......+.+ .+. ..-+..
T Consensus 234 ~Nrp~~~~l~~~l~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~-~~~---------------~p~L~~ 297 (467)
T COG2211 234 KNRPLLLLLLMNLLLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIG-LIL---------------WPRLVK 297 (467)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHH-HHh---------------HHHHHH
Confidence 567888888888888888887 26788887776654433333222221 111 133556
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHH-HHccCC------chhhH-HHHHHH
Q 039281 75 KLGKERVFWLCVYMLSIAYGAAVVVGASSSI--LLSKLLTIISHCILASSLWLRA-RTVDLS------SNTST-FSFYMF 144 (165)
Q Consensus 75 ~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~--~~~~~~~~~~H~~l~~~l~~ra-~~vdl~------sk~~i-~sfY~f 144 (165)
++|+|+++.++..+..+.++.....+..... ....++-..|+...-.+.|.-- ..+|.+ ++|.+ .+.+-|
T Consensus 298 ~~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF 377 (467)
T COG2211 298 KFGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTF 377 (467)
T ss_pred HhchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHH
Confidence 8999999999999999999988877722211 1122333467777777776322 224442 23332 455556
Q ss_pred HHHHHHH
Q 039281 145 IWKASDC 151 (165)
Q Consensus 145 IWkLFy~ 151 (165)
.=|+=.+
T Consensus 378 ~~K~g~a 384 (467)
T COG2211 378 FRKLGLA 384 (467)
T ss_pred HHHHHHH
Confidence 5565443
No 89
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=65.39 E-value=35 Score=29.80 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhccCChhhhhhcCC-cchh---HHhhHHHHHHHHHHHHHH
Q 039281 43 VFICCFCIASAFLKDLHDVDGDKEFGI-ETLS---VKLGKERVFWLCVYMLSI 91 (165)
Q Consensus 43 ~f~~~f~~~i~i~KDi~DieGDr~~Gi-~Tla---v~lG~~~~~~l~~~ll~~ 91 (165)
.-.++.+.+-.++||+-|.|=||+... +.=| =++.++.+......++.+
T Consensus 51 ~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~ 103 (294)
T PRK12873 51 LGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLL 103 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 333455556669999999999998765 2333 344556665555544443
No 90
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=65.27 E-value=92 Score=27.00 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=28.0
Q ss_pred HHHHHHHhccCChhhhhhc------------CCcchh-HHhhHHHHHHHHHHHHHHHHH
Q 039281 49 CIASAFLKDLHDVDGDKEF------------GIETLS-VKLGKERVFWLCVYMLSIAYG 94 (165)
Q Consensus 49 ~~~i~i~KDi~DieGDr~~------------Gi~Tla-v~lG~~~~~~l~~~ll~~~y~ 94 (165)
+.+ .++||.-|.|=|++. ..|.+| -++-+|.+..++..+..++.+
T Consensus 55 ~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~ 112 (297)
T PRK12871 55 EAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSA 112 (297)
T ss_pred HHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 444 499999999999753 122222 255667777766666555443
No 91
>PRK08238 hypothetical protein; Validated
Probab=63.14 E-value=72 Score=29.68 Aligned_cols=51 Identities=18% Similarity=0.076 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhccCChhhhhhcCC-cchh---HHhhHHHHHHHHHHHHHHHHHHH
Q 039281 46 CCFCIASAFLKDLHDVDGDKEFGI-ETLS---VKLGKERVFWLCVYMLSIAYGAA 96 (165)
Q Consensus 46 ~~f~~~i~i~KDi~DieGDr~~Gi-~Tla---v~lG~~~~~~l~~~ll~~~y~~~ 96 (165)
++.+.+..++||+-|.|=||++-. +.=| =++..+.+..++..++.+..+.+
T Consensus 236 ~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~ 290 (479)
T PRK08238 236 SLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALA 290 (479)
T ss_pred HHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 456667779999999999999832 2223 24555666666665555554433
No 92
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=63.11 E-value=93 Score=26.29 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChh--hhhh---cCCcchhH-HhhHH
Q 039281 6 PLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVD--GDKE---FGIETLSV-KLGKE 79 (165)
Q Consensus 6 pLl~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~Die--GDr~---~Gi~Tlav-~lG~~ 79 (165)
+-+....++.++|.+++... | ...+.. .........+...+...+||.-|.| -|++ .+-|.++- ++-+|
T Consensus 13 ~~~~~~~~p~l~G~~~a~~~---~-~~~~~~-~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~ 87 (293)
T PRK06080 13 KTLPAAFAPVLVGTALAYWL---G-SFHPLL-ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPK 87 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHc---C-CccHHH-HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHH
Confidence 34455567788888876321 2 222222 2223334445566778999999985 4532 22233321 34466
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 039281 80 RVFWLCVYMLSIAYGAAV 97 (165)
Q Consensus 80 ~~~~l~~~ll~~~y~~~i 97 (165)
++.+.+..+..++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~~g~ 105 (293)
T PRK06080 88 QVKRAAIAFFGLAALLGL 105 (293)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666655555544443
No 93
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=61.94 E-value=60 Score=28.55 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhhhhcC---CcchhH-HhhHHHHHHHHH
Q 039281 38 LMFATVFICCFCIASAFLKDLHDVDGDKEFG---IETLSV-KLGKERVFWLCV 86 (165)
Q Consensus 38 ~~~~~~f~~~f~~~i~i~KDi~DieGDr~~G---i~Tlav-~lG~~~~~~l~~ 86 (165)
....+..+...-.+=..+||+-|.|=||+.. -|-+|. ++.++.+.....
T Consensus 49 ~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~ 101 (300)
T PRK12876 49 ISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLT 101 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 3445555555666667999999999999887 333332 334455544443
No 94
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=60.37 E-value=1.1e+02 Score=26.42 Aligned_cols=18 Identities=17% Similarity=0.141 Sum_probs=13.6
Q ss_pred HHhccCChhhhhhcCCcc
Q 039281 54 FLKDLHDVDGDKEFGIET 71 (165)
Q Consensus 54 i~KDi~DieGDr~~Gi~T 71 (165)
-+||.-|.|-|+++.-|.
T Consensus 52 ~~Ndy~D~~~d~dn~r~~ 69 (282)
T PRK13105 52 GINDVFDYESDLRNPRKG 69 (282)
T ss_pred hhhhhhhhhcCCCCcccC
Confidence 459999999888875543
No 95
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=58.69 E-value=1.1e+02 Score=25.89 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=28.4
Q ss_pred HHHHHHHHHhccCChhhhhhcCC---cchhH-HhhHHHHHHHHHHHHHHH
Q 039281 47 CFCIASAFLKDLHDVDGDKEFGI---ETLSV-KLGKERVFWLCVYMLSIA 92 (165)
Q Consensus 47 ~f~~~i~i~KDi~DieGDr~~Gi---~Tlav-~lG~~~~~~l~~~ll~~~ 92 (165)
+...+-.++||+-|.|=||+... |.+|. ++.++.+......+..++
T Consensus 53 l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~ 102 (282)
T PRK12848 53 LMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVA 102 (282)
T ss_pred HHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHH
Confidence 44456679999999999985432 33332 345566655555544443
No 96
>PLN02922 prenyltransferase
Probab=54.03 E-value=1.5e+02 Score=25.94 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhh
Q 039281 5 PPLVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDG 63 (165)
Q Consensus 5 ~pLl~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieG 63 (165)
|+-+-+-.+..++|++++... ++...+...+ .....+.++-.+.++.||--|-+-
T Consensus 24 p~tl~~s~~pv~lG~a~A~~~---~g~f~~~~~l-l~ll~~~l~q~~~N~~NDy~D~~~ 78 (315)
T PLN02922 24 LPMYSVALVPLTVGAAAAYLQ---TGLFDARRYG-TLLLSSVLVITWLNLSNDAYDADT 78 (315)
T ss_pred cchHHHHHHHHHHHHHHHHHc---CCCccHHHHH-HHHHHHHHHHHHHHHHhhhhHhcc
Confidence 344556667889999987432 1233333322 233444566677789999988664
No 97
>PLN02878 homogentisate phytyltransferase
Probab=53.77 E-value=61 Score=28.47 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=26.3
Q ss_pred HHHHhccCChhhhhhcCCcchhHHhhH---HHHHHHHHHHHHHHHH
Q 039281 52 SAFLKDLHDVDGDKEFGIETLSVKLGK---ERVFWLCVYMLSIAYG 94 (165)
Q Consensus 52 i~i~KDi~DieGDr~~Gi~Tlav~lG~---~~~~~l~~~ll~~~y~ 94 (165)
|-=+||..|+|=||. |....|+-=|+ |.+.+++..+..+...
T Consensus 39 ivglNd~~D~EIDkI-NkP~rPIpSG~iS~~~a~~~~~~~~~lg~~ 83 (280)
T PLN02878 39 IVGLNQLYDIEIDKV-NKPYLPLASGEFSVATGVAIVTSFAIMSFG 83 (280)
T ss_pred eechhhhhhhccccc-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 335799999999975 45677776553 4444555444444333
No 98
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=52.43 E-value=65 Score=27.72 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=23.9
Q ss_pred HHHHHHHHHHhccCChhhhhhcCCcc--hhHHhh---HHHHHHH
Q 039281 46 CCFCIASAFLKDLHDVDGDKEFGIET--LSVKLG---KERVFWL 84 (165)
Q Consensus 46 ~~f~~~i~i~KDi~DieGDr~~Gi~T--lav~lG---~~~~~~l 84 (165)
.+...+-.++||.-|.|-|++.. || =|+--| ++.+...
T Consensus 52 ~l~~~a~~~~Nd~~D~~iD~~~~-RT~~RPL~sG~is~~~A~~~ 94 (291)
T PRK12886 52 VGARTAAMGFNRLIDAEIDARNP-RTAGRAIPAGLISKGSAILF 94 (291)
T ss_pred HHHHHHHHHHHhHHhhccCCCCC-CCCCCCCCCCCcCHHHHHHH
Confidence 34444456899999999999765 33 244444 5555443
No 99
>PF05360 YiaAB: yiaA/B two helix domain; InterPro: IPR008024 This domain consists of two transmembrane helices and a conserved linking section.
Probab=51.62 E-value=67 Score=21.06 Aligned_cols=31 Identities=16% Similarity=0.304 Sum_probs=25.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhccCC
Q 039281 30 RPVEITRSLMFATVFICCFCIASAFLKDLHD 60 (165)
Q Consensus 30 ~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~D 60 (165)
.|..++.......+++.....++.+.|.+||
T Consensus 23 ~~~~l~~KGy~~~~~l~~l~s~~tl~K~vRD 53 (53)
T PF05360_consen 23 APLDLSEKGYYAMGLLFLLFSAFTLQKTVRD 53 (53)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 3667777778888888888888999999998
No 100
>PRK10133 L-fucose transporter; Provisional
Probab=49.71 E-value=1.4e+02 Score=26.46 Aligned_cols=77 Identities=8% Similarity=-0.021 Sum_probs=43.2
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHh-h--hHHHHHHHHHHHHHHHHHHHHHHHHHccCCchh-hHHHHHHHHHH
Q 039281 72 LSVKLGKERVFWLCVYMLSIAYGAAVVVGAS-S--SILLSKLLTIISHCILASSLWLRARTVDLSSNT-STFSFYMFIWK 147 (165)
Q Consensus 72 lav~lG~~~~~~l~~~ll~~~y~~~i~~g~~-~--~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~-~i~sfY~fIWk 147 (165)
+.-|+|+|++...+..+..+..+.....+.. + .......+...|+...-...-....+...+++. ...+++|..|.
T Consensus 84 l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~ 163 (438)
T PRK10133 84 LMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNS 163 (438)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 3448899999988877777665443211211 1 122344556677777665554433333323333 35677887776
Q ss_pred H
Q 039281 148 A 148 (165)
Q Consensus 148 L 148 (165)
+
T Consensus 164 ~ 164 (438)
T PRK10133 164 F 164 (438)
T ss_pred H
Confidence 4
No 101
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=47.45 E-value=17 Score=27.69 Aligned_cols=37 Identities=32% Similarity=0.306 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHhccCChhhhhhc--CCcchhHHhhHHH
Q 039281 44 FICCFCIASAFLKDLHDVDGDKEF--GIETLSVKLGKER 80 (165)
Q Consensus 44 f~~~f~~~i~i~KDi~DieGDr~~--Gi~Tlav~lG~~~ 80 (165)
+..-++.+.-+.||+.|.++|.+. |..|+|..+-.++
T Consensus 148 ~~~~~g~~~ql~nDl~~~~~e~~~~~~~~~l~~~~~~~~ 186 (243)
T cd00385 148 LGRALGLAFQLTNDLLDYEGDAERGEGKCTLPVLYALEY 186 (243)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCchHHHHHHHHHh
Confidence 344566667799999999999998 7899998776553
No 102
>PRK08238 hypothetical protein; Validated
Probab=46.56 E-value=2.5e+02 Score=26.18 Aligned_cols=64 Identities=19% Similarity=0.418 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHhhhh------------------hhhhcc-ccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhh
Q 039281 5 PPLVLGVIVWFLFGTAYSVQ------------------KYVLGR-PVEITRSLMFATVFICCFCIASAFLKDLHDVDGDK 65 (165)
Q Consensus 5 ~pLl~~~~~slllgtaYS~~------------------~~vlg~-~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr 65 (165)
+.....+...++...+||.. +.+.|. ....+.+.|++. +..++....++.|...|.++++
T Consensus 295 ~~~~~~~~~~~~~~~~Ys~~lKr~~~~~~~~la~~~~lr~~~G~~a~~~~~s~wll~-~~~~~~l~la~~KR~~El~~~~ 373 (479)
T PRK08238 295 PAFLLVLLAYLALTLAYSLRLKRKVLVDVLTLAALYTLRIIAGAAAIGVALSFWLLA-FSMFFFLSLALVKRYTELRRAL 373 (479)
T ss_pred HHHHHHHHHHHHHHHHhhHHhcCCccccchHHHHHHHHHHHHHHHHhccCHHHHHHH-HHHHHHHHHHHHHhHHHHHHHH
Confidence 44445556677778899961 112222 122345555543 5556778899999999999999
Q ss_pred hcCC
Q 039281 66 EFGI 69 (165)
Q Consensus 66 ~~Gi 69 (165)
+.|.
T Consensus 374 ~~~~ 377 (479)
T PRK08238 374 QRGK 377 (479)
T ss_pred hcCC
Confidence 9885
No 103
>PRK13591 ubiA prenyltransferase; Provisional
Probab=45.49 E-value=2.2e+02 Score=25.27 Aligned_cols=63 Identities=13% Similarity=0.022 Sum_probs=35.5
Q ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281 27 VLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVG 100 (165)
Q Consensus 27 vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g 100 (165)
..|.|..++-.. ...+...+-...||.-|.|-||.+. . -|.|+ ....+..+..++++.++.+.
T Consensus 54 L~g~~~~~~~~~-----~~~L~~~s~~~iNd~~D~eiD~IN~-P---~r~~~--s~~~a~~ls~la~llGl~La 116 (307)
T PRK13591 54 LLGLQSSILTCI-----AGGLIIYSVYTLDRALDSEEDAVNR-S---ELIGS--NKKIGLLVSLLAFLLGTYIL 116 (307)
T ss_pred HhCCCcchHHHH-----HHHHHHHHHHHHhhhccchhhhccC-c---ccccc--CHHHHHHHHHHHHHHHHHHH
Confidence 556666654332 2234455578999999999998853 2 34443 23334444444444444333
No 104
>PF06645 SPC12: Microsomal signal peptidase 12 kDa subunit (SPC12); InterPro: IPR009542 This family consists of several microsomal signal peptidase 12 kDa subunit proteins. Translocation of polypeptide chains across the endoplasmic reticulum (ER) membrane is triggered by signal sequences. Subsequently, signal recognition particle interacts with its membrane receptor and the ribosome-bound nascent chain is targeted to the ER where it is transferred into a protein-conducting channel. At some point, a second signal sequence recognition event takes place in the membrane and translocation of the nascent chain through the membrane occurs. The signal sequence of most secretory and membrane proteins is cleaved off at this stage. Cleavage occurs by the signal peptidase complex (SPC) as soon as the lumenal domain of the translocating polypeptide is large enough to expose its cleavage site to the enzyme. The signal peptidase complex is possibly also involved in proteolytic events in the ER membrane other than the processing of the signal sequence, for example the further digestion of the cleaved signal peptide or the degradation of membrane proteins. Mammalian signal peptidase is as a complex of five different polypeptide chains. This family represents the 12 kDa subunit (SPC12).; GO: 0008233 peptidase activity, 0006465 signal peptide processing, 0005787 signal peptidase complex, 0016021 integral to membrane
Probab=43.34 E-value=1.1e+02 Score=21.38 Aligned_cols=46 Identities=17% Similarity=0.135 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 039281 77 GKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASS 122 (165)
Q Consensus 77 G~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~ 122 (165)
|||++..+...++.+.-+.+.++|......-......++-.+++.+
T Consensus 5 gQ~~ae~l~~~il~~~~iisfi~Gy~~q~~~~~~~~~~~g~~~~~l 50 (76)
T PF06645_consen 5 GQRLAEKLMQYILIISAIISFIVGYITQSFSYTFYIYGAGVVLTLL 50 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999997765544444443333444333
No 105
>PRK10581 geranyltranstransferase; Provisional
Probab=42.12 E-value=59 Score=28.19 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHHHHHHHHHHHH
Q 039281 43 VFICCFCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKERVFWLCVYMLS 90 (165)
Q Consensus 43 ~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~~~~l~~~ll~ 90 (165)
-|---+..+--|..|+-|+.|| -+.|..|+|+..|.+++...+--...
T Consensus 210 ~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~ 268 (299)
T PRK10581 210 RYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268 (299)
T ss_pred HHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444444599999998776 45799999999999887765544444
No 106
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=40.39 E-value=2.3e+02 Score=24.59 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=37.0
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH-HHHccCCchhhHHHHHHHHH
Q 039281 72 LSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLR-ARTVDLSSNTSTFSFYMFIW 146 (165)
Q Consensus 72 lav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~r-a~~vdl~sk~~i~sfY~fIW 146 (165)
+.-|+|+|++...+..+..+.........-.......+.+...++....+....- ++..+.+.+....+.|+..+
T Consensus 66 l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~ 141 (412)
T TIGR02332 66 MLAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAM 141 (412)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 3348899998877766666555443322111112334455666666544433221 22233334444455555443
No 107
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=38.83 E-value=3.3e+02 Score=25.37 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=19.5
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHH
Q 039281 73 SVKLGKERVFWLCVYMLSIAYGAAV 97 (165)
Q Consensus 73 av~lG~~~~~~l~~~ll~~~y~~~i 97 (165)
..|+++++.+.+.......+|+.-.
T Consensus 68 ~~~~~~~~lf~~~~~~F~~~f~lF~ 92 (472)
T TIGR00769 68 SNILSKEALFYTVISPFLGFFALFA 92 (472)
T ss_pred HhcCCHHHhHHHHHHHHHHHHHHHH
Confidence 4588899999988888888776643
No 108
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=38.69 E-value=1.2e+02 Score=20.39 Aligned_cols=19 Identities=11% Similarity=0.548 Sum_probs=11.4
Q ss_pred HhhHHHHHHHHHHHHHHHH
Q 039281 75 KLGKERVFWLCVYMLSIAY 93 (165)
Q Consensus 75 ~lG~~~~~~l~~~ll~~~y 93 (165)
|.|+|+....+..+.....
T Consensus 24 ~~g~~~~~~~~~~~~~~~~ 42 (141)
T TIGR00880 24 RFGRKPVLLVGLFIFVLST 42 (141)
T ss_pred hcchhHHHHHHHHHHHHHH
Confidence 5677777766655554443
No 109
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=37.84 E-value=2.3e+02 Score=23.27 Aligned_cols=20 Identities=5% Similarity=0.036 Sum_probs=11.7
Q ss_pred HHccCCchhhHHHHHHHHHH
Q 039281 128 RTVDLSSNTSTFSFYMFIWK 147 (165)
Q Consensus 128 ~~vdl~sk~~i~sfY~fIWk 147 (165)
++...+++....+.|+...+
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~ 333 (375)
T TIGR00899 314 QDLMPGRAGAATTLYTNTGR 333 (375)
T ss_pred HHhCcchhhHHHHHHHHHHH
Confidence 33434455567777776655
No 110
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=36.63 E-value=2.3e+02 Score=22.89 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=14.2
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 039281 75 KLGKERVFWLCVYMLSIAYG 94 (165)
Q Consensus 75 ~lG~~~~~~l~~~ll~~~y~ 94 (165)
|+|+|++..++..+..+...
T Consensus 64 ~~G~r~~~~~~~~~~~~~~~ 83 (377)
T TIGR00890 64 KFGPRAVAMLGGILYGLGFT 83 (377)
T ss_pred HcCccchhHHhHHHHHHHHH
Confidence 68888888777766665553
No 111
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=35.79 E-value=2.9e+02 Score=23.81 Aligned_cols=42 Identities=14% Similarity=0.007 Sum_probs=25.1
Q ss_pred HHHHHHHHhccCChhhhhhcC---CcchhH-HhhHHHHHHHHHHHH
Q 039281 48 FCIASAFLKDLHDVDGDKEFG---IETLSV-KLGKERVFWLCVYML 89 (165)
Q Consensus 48 f~~~i~i~KDi~DieGDr~~G---i~Tlav-~lG~~~~~~l~~~ll 89 (165)
...+-..+||.-|.|=|++.. -|-+|. ++-++.+......+.
T Consensus 59 ~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~ 104 (291)
T PRK12874 59 ARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNA 104 (291)
T ss_pred HHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHH
Confidence 344446899999999999884 343332 334455544444333
No 112
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=33.71 E-value=1.4e+02 Score=20.38 Aligned_cols=43 Identities=16% Similarity=0.277 Sum_probs=25.2
Q ss_pred HHHHHHHHHhhhhhh---hhccccchhHHHHHHHHHHHHHHHHHHHHhc
Q 039281 12 IVWFLFGTAYSVQKY---VLGRPVEITRSLMFATVFICCFCIASAFLKD 57 (165)
Q Consensus 12 ~~slllgtaYS~~~~---vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KD 57 (165)
.+|..+|.+|++... .++.|.. .+.+...+.+.+.+.--+.|.
T Consensus 12 ~is~~lG~~~~~~~pl~~llk~p~t---ai~~i~~~~~~~~~l~~tL~a 57 (61)
T PF05421_consen 12 FISVMLGLFLIIFEPLKPLLKNPVT---AIALIGILIGGFIFLYFTLRA 57 (61)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchH---HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999543 3444433 244445555555554444443
No 113
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=29.70 E-value=3.4e+02 Score=23.25 Aligned_cols=46 Identities=15% Similarity=0.181 Sum_probs=29.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 039281 75 KLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILA 120 (165)
Q Consensus 75 ~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~ 120 (165)
|+|+|++...+..+..+..+..-.+.-.......+.+...++....
T Consensus 70 r~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~ 115 (393)
T PRK09705 70 HVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQ 115 (393)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHh
Confidence 7999999999888888777655433222223444555666666543
No 114
>PRK09848 glucuronide transporter; Provisional
Probab=28.54 E-value=3.9e+02 Score=23.19 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=14.6
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHH
Q 039281 73 SVKLGKERVFWLCVYMLSIAYGAA 96 (165)
Q Consensus 73 av~lG~~~~~~l~~~ll~~~y~~~ 96 (165)
..|.|+|++..++..+..+.+...
T Consensus 288 ~~r~g~~~~~~~g~~~~~i~~~~~ 311 (448)
T PRK09848 288 VARIGKKNTFLIGALLGTCGYLLF 311 (448)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHH
Confidence 346677777777666555555443
No 115
>PRK12382 putative transporter; Provisional
Probab=28.34 E-value=2.8e+02 Score=23.30 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=12.2
Q ss_pred HHccCCchhhHHHHHHHHHHH
Q 039281 128 RTVDLSSNTSTFSFYMFIWKA 148 (165)
Q Consensus 128 ~~vdl~sk~~i~sfY~fIWkL 148 (165)
+..+.+++....+.++..+.+
T Consensus 329 ~~~~~~~~g~~~g~~~~~~~~ 349 (392)
T PRK12382 329 KRVPSQVRGTALGGYAAFQDI 349 (392)
T ss_pred HhcCHHHHHHHHHHHHHHHHH
Confidence 334445566667777666544
No 116
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=27.29 E-value=3.6e+02 Score=22.34 Aligned_cols=64 Identities=20% Similarity=0.231 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 039281 36 RSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAVVVG 100 (165)
Q Consensus 36 ~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g 100 (165)
....-+++.+=++-.+-.|..|+.|-. +.++|..|.-.++|.+.+...+-.++..++-...-.+
T Consensus 33 ~~~~~~a~avEliH~asLIhDDI~D~s-~~RRG~pt~~~~~G~~~Ail~gd~ll~~a~~~l~~~~ 96 (260)
T PF00348_consen 33 EKAIPLAAAVELIHAASLIHDDIIDNS-DLRRGKPTVHKKFGNAIAILAGDYLLALAFELLARLG 96 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC-SEETTEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccc-ccCCCCccccccccccchhhhchHHHHHHHHHHHHhh
Confidence 445556667777777888999997754 6789999999999999999888888887776655333
No 117
>PF02537 CRCB: CrcB-like protein; InterPro: IPR003691 Three genes, crcA, cspE and crcB when present in high copy confer camphor resistance on a cell and suppress mutations in the chromosomal partition gene mukB in Escherichia coli. The cspE gene has been previously identified as a cold shock-like protein with homologues in all organisms tested []. Camphor and mukB mutations may interfere with chromosome condensation and high copy crcA, cspE and crcB have been implicated as promoting or protecting chromosome folding [].; GO: 0016020 membrane
Probab=26.75 E-value=1.5e+02 Score=21.54 Aligned_cols=59 Identities=19% Similarity=0.202 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhh
Q 039281 7 LVLGVIVWFLFGTAYSVQKYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDK 65 (165)
Q Consensus 7 Ll~~~~~slllgtaYS~~~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr 65 (165)
+..+...|+++|..+.....-...+..-+....+.+.|++-|++--..++|.-+.-.|+
T Consensus 34 ~~vN~~g~fllG~~~~~~~~~~~~~~~~~~~~~l~~Gf~G~lTTfSt~~~e~~~l~~~~ 92 (117)
T PF02537_consen 34 LLVNVLGCFLLGLLAGLLAKKLASKWSPSLRLFLGTGFCGGLTTFSTFILETFQLFESG 92 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHcchHHHHHHHHHHHHHHHhCC
Confidence 67788889999999886542222223333444667777777777666666665554333
No 118
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=26.48 E-value=3.3e+02 Score=21.61 Aligned_cols=57 Identities=19% Similarity=0.197 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHH-hhHHHHHHHHHHHHHHHHHH
Q 039281 38 LMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVK-LGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 38 ~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~-lG~~~~~~l~~~ll~~~y~~ 95 (165)
..-....+-++-.+.-+..|+.|- .+.+.|.+|.-.+ +|...+...+-.++..++..
T Consensus 20 ~~~~a~ave~l~~~~li~DDI~D~-~~~rrg~~~~~~~~~g~~~ai~~gd~l~~~a~~~ 77 (236)
T cd00867 20 ALRLAAAVELLHAASLVHDDIVDD-SDLRRGKPTAHLRRFGNALAILAGDYLLARAFQL 77 (236)
T ss_pred HHHHHHHHHHHHHHHHHHcccccC-CccCCCCccHhHHhhCHhHHHHHHHHHHHHHHHH
Confidence 334455556666667799999995 4555788888887 99887766555555544443
No 119
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=26.48 E-value=3.9e+02 Score=22.45 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=13.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 039281 75 KLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 75 ~lG~~~~~~l~~~ll~~~y~~ 95 (165)
|+|+|+...++..+..+.+..
T Consensus 64 r~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 64 RSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HhCChHHHHHHHHHHHHHHHH
Confidence 578888877766665555443
No 120
>PRK10581 geranyltranstransferase; Provisional
Probab=25.85 E-value=2.1e+02 Score=24.75 Aligned_cols=56 Identities=21% Similarity=0.305 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhccCChhhh-hhcCCcchhHHhhHHHHHHHHHHHHHHHHHHH
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGD-KEFGIETLSVKLGKERVFWLCVYMLSIAYGAA 96 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGD-r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~ 96 (165)
+++.+=++-.+-.+-.|+|.+++| .++|..|.-.++|...+...+-.++..+|-..
T Consensus 69 ~A~avEliH~aSLiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l 125 (299)
T PRK10581 69 PAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSIL 125 (299)
T ss_pred HHHHHHHHHHHHHHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHH
Confidence 344444555555588999876665 56999999999999999888888877777544
No 121
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=25.16 E-value=1.5e+02 Score=20.36 Aligned_cols=37 Identities=14% Similarity=0.235 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHH
Q 039281 39 MFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKE 79 (165)
Q Consensus 39 ~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~ 79 (165)
.++....++++....++||-+ |.+.=.+.+..|.|-.
T Consensus 8 lll~ii~sL~saL~~l~kd~~----~~~rm~~~L~~RV~lS 44 (63)
T PF11137_consen 8 LLLAIIASLFSALFFLVKDKG----SSKRMVKALGRRVGLS 44 (63)
T ss_pred HHHHHHHHHHHHHHHHhhCCC----CCchHHHHHHHHHHHH
Confidence 445555567777777888833 3333346666666554
No 122
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=24.91 E-value=2.2e+02 Score=23.60 Aligned_cols=60 Identities=20% Similarity=0.183 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHH
Q 039281 36 RSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAA 96 (165)
Q Consensus 36 ~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~ 96 (165)
....-+++.+=++-.+-.|..|+.|-. +.++|..|.-.++|...+...+-.++..++-..
T Consensus 39 ~~~~~la~aiEllh~asLIhDDI~D~s-~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l 98 (259)
T cd00685 39 EAALRLAAAIELLHTASLVHDDVMDNS-DLRRGKPTVHKVFGNATAILAGDYLLARAFELL 98 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCC-cccCCCCcHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 344555666677777788999997754 567999999999999888777776666665443
No 123
>PTZ00207 hypothetical protein; Provisional
Probab=23.22 E-value=2.4e+02 Score=27.04 Aligned_cols=82 Identities=11% Similarity=0.163 Sum_probs=58.6
Q ss_pred HHHHHHHHhhhh--------hhhhccccchhHHHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHH
Q 039281 13 VWFLFGTAYSVQ--------KYVLGRPVEITRSLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWL 84 (165)
Q Consensus 13 ~slllgtaYS~~--------~~vlg~~~~~~~~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l 84 (165)
-++++|.+|-.+ +-++|+...---+..+....++-+.+-.-+.--+-|.|.+|+.+ . +-.|++..+.-
T Consensus 458 ~~~lvg~~~G~~~~~~~~i~selFgk~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~-~---~C~G~~C~~~~ 533 (591)
T PTZ00207 458 PYFIAAFANGFMAATIALVTRTIFAKDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQ-D---VCTERVCVVMP 533 (591)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHhccchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCC-C---eeCCceeeHhH
Confidence 456666666653 45677666666777888888888888888999999999998533 2 57788877766
Q ss_pred HHHHHHHHHHHHHH
Q 039281 85 CVYMLSIAYGAAVV 98 (165)
Q Consensus 85 ~~~ll~~~y~~~i~ 98 (165)
-.++..+|..+.++
T Consensus 534 ~~v~~~~~~~g~~~ 547 (591)
T PTZ00207 534 LAFLLGLSFLAFIT 547 (591)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655553
No 124
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=23.05 E-value=2e+02 Score=23.89 Aligned_cols=43 Identities=33% Similarity=0.208 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhh-----------hcCCcchhHHhhHHHHHH
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGDK-----------EFGIETLSVKLGKERVFW 83 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGDr-----------~~Gi~Tlav~lG~~~~~~ 83 (165)
+.-|-.-+..+--|.+|+.|..||. +.|+.|+|+..+.++...
T Consensus 171 l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~~~ 224 (260)
T PF00348_consen 171 LREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERARE 224 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhCHH
Confidence 4445555555556999999998764 578999999999887543
No 125
>TIGR00895 2A0115 benzoate transport.
Probab=22.83 E-value=3.4e+02 Score=22.12 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=14.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 039281 75 KLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 75 ~lG~~~~~~l~~~ll~~~y~~ 95 (165)
|+|+|+....+..+..+++..
T Consensus 78 ~~g~~~~~~~~~~~~~~~~~~ 98 (398)
T TIGR00895 78 RIGRKRVLLWSILLFSVFTLL 98 (398)
T ss_pred HhhhHHHHHHHHHHHHHHHHH
Confidence 678888877776665555443
No 126
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=22.70 E-value=4.4e+02 Score=21.75 Aligned_cols=18 Identities=6% Similarity=0.209 Sum_probs=11.1
Q ss_pred hHHhhHHHHHHHHHHHHH
Q 039281 73 SVKLGKERVFWLCVYMLS 90 (165)
Q Consensus 73 av~lG~~~~~~l~~~ll~ 90 (165)
.-|.|+|+...++..+..
T Consensus 254 ~~r~g~~~~~~~~~~~~~ 271 (377)
T PRK11102 254 VRRVGALNMLRFGLWIQF 271 (377)
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 446777877666655433
No 127
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=22.20 E-value=4.5e+02 Score=21.61 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=12.6
Q ss_pred HhhHHHHHHHHHHHHHHHH
Q 039281 75 KLGKERVFWLCVYMLSIAY 93 (165)
Q Consensus 75 ~lG~~~~~~l~~~ll~~~y 93 (165)
|+|+|++..++..+..+..
T Consensus 73 r~g~r~~~~~~~~~~~~~~ 91 (405)
T TIGR00891 73 RYGRRLPMVTSIVLFSAGT 91 (405)
T ss_pred HhccHHHHHHHHHHHHHHH
Confidence 6788888777665554443
No 128
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=21.28 E-value=3.6e+02 Score=23.41 Aligned_cols=53 Identities=21% Similarity=0.241 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 42 TVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 42 ~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
++.+=++-.+-.|-.|+.|-. |.++|..|.-.++|.+.+...+-.++..++-.
T Consensus 69 A~aiEliH~asLiHDDI~D~s-~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~ 121 (319)
T TIGR02748 69 AVALELIHMASLVHDDVIDDA-DLRRGRPTIKSKWGNRIAMYTGDYLFAKSLET 121 (319)
T ss_pred HHHHHHHHHHHHHhccccCCC-CCCCCCcCHHHHhChHHHHHHHHHHHHHHHHH
Confidence 344445555555889998855 67779999999999998877777766665543
No 129
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=21.22 E-value=2.9e+02 Score=24.05 Aligned_cols=60 Identities=23% Similarity=0.205 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHH
Q 039281 37 SLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAV 97 (165)
Q Consensus 37 ~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i 97 (165)
.+.-+++.+=+.-.+-.+-.|+.| +-|.++|..|...++|...+...+-.++.-+|-.+.
T Consensus 67 ~~~~~aaavEliH~~SLiHDDvmD-~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~ 126 (322)
T COG0142 67 DALDLAAAIELIHTASLIHDDLMD-DDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLS 126 (322)
T ss_pred hHHHHHHHHHHHHHHHHHHhhccc-CCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666668899977 568999999999999999998888888887776655
No 130
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=20.92 E-value=7.4e+02 Score=23.69 Aligned_cols=72 Identities=10% Similarity=-0.034 Sum_probs=41.9
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhhHHHHHH
Q 039281 72 LSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNTSTFSFYM 143 (165)
Q Consensus 72 lav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~~i~sfY~ 143 (165)
++-|+|.|++..++...-.++.+......-.......+.+++.+.+...+..-.=++.++.+++...+++.+
T Consensus 85 LaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~A~~syI~~WfP~kER~ratsi~~ 156 (511)
T TIGR00806 85 LTDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARIAYSSYIFSLVPPSRYQRAAAYSR 156 (511)
T ss_pred HHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 457888998887777666666655554433333445556666666555544444445566655555555443
No 131
>TIGR00898 2A0119 cation transport protein.
Probab=20.91 E-value=4.1e+02 Score=23.28 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=13.6
Q ss_pred hHHhhHHHHHHHHHHHHHHHH
Q 039281 73 SVKLGKERVFWLCVYMLSIAY 93 (165)
Q Consensus 73 av~lG~~~~~~l~~~ll~~~y 93 (165)
+-|+|+|++..++..+..++.
T Consensus 151 ~Dr~Grr~~~~~~~~~~~i~~ 171 (505)
T TIGR00898 151 SDRFGRKKVLLLSTLVTAVSG 171 (505)
T ss_pred hhhccchHHHHHHHHHHHHHH
Confidence 347888888777665554443
No 132
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=20.70 E-value=4.1e+02 Score=23.13 Aligned_cols=58 Identities=19% Similarity=0.099 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 37 SLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 37 ~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
...-+++.+=++-.+-.+-.|+.|-. |.++|..|.-.++|.+.+...+-.++.-++-.
T Consensus 68 ~~~~~A~avEliH~asLiHDDiiD~s-~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~ 125 (322)
T TIGR02749 68 RHRRLAEITEMIHTASLVHDDVIDES-DTRRGIETVHSLFGTRVAVLAGDFLFAQASWY 125 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcccccCc-cccCCCccHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 33444555566666666899998854 88999999999999999888777777666643
No 133
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=20.59 E-value=5.2e+02 Score=23.67 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=46.4
Q ss_pred chhHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHccCCchh
Q 039281 71 TLSVKLGKERVFWLCVYMLSIAYGAAVVVGASSSILLSKLLTIISHCILASSLWLRARTVDLSSNT 136 (165)
Q Consensus 71 Tlav~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~~~~~~~~~~~~H~~l~~~l~~ra~~vdl~sk~ 136 (165)
.++-|+.||+.......++.+.=+..-+..=.......+.++...|.+.-+.-.--+.++-..+|.
T Consensus 70 ~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~ 135 (394)
T COG2814 70 LLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKR 135 (394)
T ss_pred HHHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccch
Confidence 456688899998777777666555444444444567788999999999988777666665555544
No 134
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=20.44 E-value=5.6e+02 Score=22.10 Aligned_cols=13 Identities=23% Similarity=0.373 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHH
Q 039281 106 LLSKLLTIISHCI 118 (165)
Q Consensus 106 ~~~~~~~~~~H~~ 118 (165)
...+.++..++..
T Consensus 83 ~~~R~l~G~g~~~ 95 (368)
T TIGR00903 83 LACQLLAALGQPF 95 (368)
T ss_pred HHHHHHHHhHhHH
Confidence 3445556666654
No 135
>PRK03633 putative MFS family transporter protein; Provisional
Probab=20.20 E-value=5.3e+02 Score=21.71 Aligned_cols=24 Identities=13% Similarity=0.421 Sum_probs=17.1
Q ss_pred hhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 72 LSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 72 lav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
+.-|.|+|+...++..+..+.+..
T Consensus 64 l~dr~g~k~~~~~~~~~~~~~~~~ 87 (381)
T PRK03633 64 VIKRIGFNRSYYLASLIFAAGCAG 87 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444799999988877776665543
Done!