Query 039281
Match_columns 165
No_of_seqs 174 out of 320
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 13:36:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kra_B Geranyl diphosphate syn 55.6 13 0.00044 30.6 4.4 56 40-95 64-119 (274)
2 3m0g_A Farnesyl diphosphate sy 54.2 18 0.00062 30.1 5.2 53 41-93 201-264 (297)
3 3llw_A Geranyltranstransferase 54.1 16 0.00054 30.8 4.8 52 42-93 216-276 (311)
4 3lsn_A Geranyltranstransferase 51.3 18 0.00063 30.2 4.8 54 41-94 208-272 (304)
5 3p8r_A Geranyltranstransferase 51.1 17 0.00057 30.4 4.5 50 43-92 216-276 (302)
6 3ts7_A Geranyltranstransferase 51.0 17 0.00058 30.8 4.5 54 41-94 214-278 (324)
7 3lom_A Geranyltranstransferase 48.0 18 0.00061 30.5 4.2 52 42-93 216-278 (313)
8 4f62_A Geranyltranstransferase 47.9 20 0.0007 30.2 4.5 53 41-93 207-270 (317)
9 2j1p_A Geranylgeranyl pyrophos 47.4 14 0.00047 30.7 3.3 43 43-88 220-262 (293)
10 1rqj_A Geranyltranstransferase 47.3 23 0.00079 29.3 4.7 48 43-90 210-268 (299)
11 3pde_A Farnesyl-diphosphate sy 45.0 30 0.001 29.1 5.1 54 42-95 211-275 (309)
12 3p8l_A Geranyltranstransferase 43.0 25 0.00084 29.4 4.2 50 44-93 214-274 (302)
13 2h8o_A Geranyltranstransferase 41.9 26 0.0009 29.7 4.3 50 43-92 249-309 (335)
14 1rtr_A Geranyltranstransferase 40.9 32 0.0011 28.6 4.6 51 42-92 204-265 (301)
15 3npk_A Geranyltranstransferase 39.7 31 0.0011 28.6 4.4 51 43-93 202-261 (291)
16 2hdi_B Colicin-IA; outer membr 38.9 9.2 0.00031 27.5 0.8 22 46-67 67-93 (113)
17 3npk_A Geranyltranstransferase 35.7 85 0.0029 26.0 6.4 58 38-95 62-120 (291)
18 3p8l_A Geranyltranstransferase 35.2 76 0.0026 26.4 6.1 59 38-96 73-132 (302)
19 1rqj_A Geranyltranstransferase 34.8 94 0.0032 25.5 6.6 59 38-96 66-125 (299)
20 2ftz_A Geranyltranstransferase 32.8 96 0.0033 25.5 6.3 59 38-96 68-127 (284)
21 3o7q_A L-fucose-proton symport 32.0 1.9E+02 0.0065 22.9 9.2 75 74-148 86-164 (438)
22 3m0g_A Farnesyl diphosphate sy 31.2 1E+02 0.0035 25.5 6.2 58 38-95 63-121 (297)
23 1rtr_A Geranyltranstransferase 30.7 92 0.0031 25.7 5.8 57 40-96 66-123 (301)
24 1pw4_A Glycerol-3-phosphate tr 28.5 2.2E+02 0.0075 22.5 8.2 23 75-97 88-110 (451)
25 3aqb_B Component B of hexapren 28.3 37 0.0013 28.3 3.0 40 42-81 197-247 (325)
26 3tc1_A Octaprenyl pyrophosphat 27.5 88 0.003 26.1 5.2 55 40-95 61-115 (315)
27 3lom_A Geranyltranstransferase 26.5 1.2E+02 0.0043 25.2 6.0 59 38-96 72-131 (313)
28 2gfp_A EMRD, multidrug resista 26.1 1.8E+02 0.0063 22.6 6.7 21 75-95 61-81 (375)
29 4f62_A Geranyltranstransferase 25.6 1.4E+02 0.0047 25.0 6.1 58 38-95 67-125 (317)
30 3pde_A Farnesyl-diphosphate sy 25.5 1.1E+02 0.0036 25.7 5.3 56 40-95 74-130 (309)
31 3llw_A Geranyltranstransferase 25.0 1.6E+02 0.0056 24.4 6.4 59 37-95 75-134 (311)
32 3oyr_A Trans-isoprenyl diphosp 24.5 55 0.0019 27.8 3.4 39 42-80 218-267 (345)
33 1v4e_A Octoprenyl-diphosphate 24.3 38 0.0013 28.1 2.3 40 44-83 192-241 (299)
34 3qkc_B Geranyl diphosphate syn 24.1 97 0.0033 25.2 4.8 54 40-95 69-122 (273)
35 4gnt_B Carbohydrate-responsive 23.9 35 0.0012 18.7 1.4 12 143-154 8-19 (26)
36 3apz_A Geranyl diphosphate syn 23.7 1.7E+02 0.006 24.3 6.4 56 39-95 90-145 (348)
37 2qis_A Farnesyl pyrophosphate 23.5 47 0.0016 28.4 2.8 38 44-81 252-299 (374)
38 1wy0_A Geranylgeranyl pyrophos 23.1 47 0.0016 27.8 2.7 40 41-80 203-253 (342)
39 3mzv_A Decaprenyl diphosphate 22.6 42 0.0014 28.3 2.3 40 41-80 205-255 (341)
40 1yhl_A Farnesyl pyrophosphate 21.0 45 0.0015 28.2 2.2 38 44-81 238-285 (362)
41 3ipi_A Geranyltranstransferase 20.7 76 0.0026 26.3 3.5 37 42-78 193-234 (295)
42 3lsn_A Geranyltranstransferase 20.4 1.5E+02 0.0053 24.5 5.3 57 40-96 68-125 (304)
No 1
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=55.64 E-value=13 Score=30.65 Aligned_cols=56 Identities=14% Similarity=0.108 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 40 FATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 40 ~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
-+++.+=++-.+-.|-.|+++.+.|.++|..|.=.++|.+.+...+-.++..+|-.
T Consensus 64 ~~A~aiEliH~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 119 (274)
T 3kra_B 64 AAAAAIHLVHAAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFEL 119 (274)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 34445556666667999999555576799999999999998877777777776653
No 2
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=54.18 E-value=18 Score=30.14 Aligned_cols=53 Identities=21% Similarity=0.194 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHHHHHHHHHHHHHHH
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKERVFWLCVYMLSIAY 93 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y 93 (165)
+.-|-.-+..+--|..|+-|+.|| -+.|+.|+|+.+|.+++.....-+..-+.
T Consensus 201 l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~ 264 (297)
T 3m0g_A 201 LTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAE 264 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555599999999885 46799999999999999877766665544
No 3
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=54.09 E-value=16 Score=30.77 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhccCChhhhh---------hcCCcchhHHhhHHHHHHHHHHHHHHHH
Q 039281 42 TVFICCFCIASAFLKDLHDVDGDK---------EFGIETLSVKLGKERVFWLCVYMLSIAY 93 (165)
Q Consensus 42 ~~f~~~f~~~i~i~KDi~DieGDr---------~~Gi~Tlav~lG~~~~~~l~~~ll~~~y 93 (165)
.-|---+..+--|..|+-|+.||. +.|+.|+|+.+|.+++.....-++.-+.
T Consensus 216 ~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~ 276 (311)
T 3llw_A 216 QAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVL 276 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555999999999876 6899999999999999877666655544
No 4
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=51.35 E-value=18 Score=30.23 Aligned_cols=54 Identities=17% Similarity=0.102 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHHHHHHHHHHHHHHHH
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKERVFWLCVYMLSIAYG 94 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~ 94 (165)
+.-|---+..+--|..|+-|+.|| -+.|+.|+|+.+|.+++...+.-...-+.-
T Consensus 208 l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~ 272 (304)
T 3lsn_A 208 LQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALH 272 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555599999999885 467899999999999998877766665543
No 5
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=51.11 E-value=17 Score=30.40 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHHHHHHHHHHHHHH
Q 039281 43 VFICCFCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKERVFWLCVYMLSIA 92 (165)
Q Consensus 43 ~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~~~~l~~~ll~~~ 92 (165)
-|---+..+--|..|+-|+.|| -+.|+.|+|+.+|.+++...+.-...-+
T Consensus 216 ~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A 276 (302)
T 3p8r_A 216 RYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEA 276 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445455599999998875 4679999999999988877665554433
No 6
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=51.00 E-value=17 Score=30.82 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHHHHHHHHHHHHHHHH
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKERVFWLCVYMLSIAYG 94 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~ 94 (165)
+.-|---+..+--|..|+-|+.|| -+.|+.|+|+.+|.+++...+.-...-+.-
T Consensus 214 l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~ 278 (324)
T 3ts7_A 214 LDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALE 278 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555699999999875 568999999999999998877776665543
No 7
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=47.97 E-value=18 Score=30.47 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHHHHHHHHHHHHHHH
Q 039281 42 TVFICCFCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKERVFWLCVYMLSIAY 93 (165)
Q Consensus 42 ~~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y 93 (165)
.-|---+..+--|..|+-|+.|| -+.|+.|+|+.+|.+++.....-+..-+.
T Consensus 216 ~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~ 278 (313)
T 3lom_A 216 RTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAM 278 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555599999999885 46899999999999999877776665544
No 8
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=47.89 E-value=20 Score=30.24 Aligned_cols=53 Identities=21% Similarity=0.176 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHHHHHHHHHHHHHHH
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKERVFWLCVYMLSIAY 93 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y 93 (165)
+.-|---+..+--|..|+-|+.|| -+.|+.|+|+.+|.+++...+.-...-+-
T Consensus 207 l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~ 270 (317)
T 4f62_A 207 LDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAI 270 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555599999999775 46799999999999999887776665544
No 9
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=47.36 E-value=14 Score=30.68 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHH
Q 039281 43 VFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYM 88 (165)
Q Consensus 43 ~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~l 88 (165)
-|---+..+--|..|+-|+.||. +.|+|+.+|.+++...+--.
T Consensus 220 ~~g~~lG~aFQI~DDiLD~~~~~---K~T~p~l~gle~a~~~a~~~ 262 (293)
T 2j1p_A 220 KFARCIGLLFQVVDDILDVTKSS---KLTYPKLMGLEKSREFAEKL 262 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCc---cccHHHHHHHHHHHHHHHHH
Confidence 34444444455999999999999 89999999988877665544
No 10
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=47.34 E-value=23 Score=29.33 Aligned_cols=48 Identities=23% Similarity=0.266 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhccCChhhhh-----------hcCCcchhHHhhHHHHHHHHHHHHH
Q 039281 43 VFICCFCIASAFLKDLHDVDGDK-----------EFGIETLSVKLGKERVFWLCVYMLS 90 (165)
Q Consensus 43 ~f~~~f~~~i~i~KDi~DieGDr-----------~~Gi~Tlav~lG~~~~~~l~~~ll~ 90 (165)
-|---+..+--|..|+-|+.||. +.|+.|+|+.+|.+++.....-...
T Consensus 210 ~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~ 268 (299)
T 1rqj_A 210 KYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLID 268 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 34444444445999999998764 5689999999999877655444433
No 11
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=45.04 E-value=30 Score=29.11 Aligned_cols=54 Identities=22% Similarity=0.153 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHhccCChhh-----------hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 42 TVFICCFCIASAFLKDLHDVDG-----------DKEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 42 ~~f~~~f~~~i~i~KDi~DieG-----------Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
.-|---+..+--|..|+-|+.| |-+.|+.|+|+.+|.+++.....-++.-++-.
T Consensus 211 ~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~ 275 (309)
T 3pde_A 211 LQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAA 275 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3344445555559999999976 45689999999999999988777776666544
No 12
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=42.98 E-value=25 Score=29.45 Aligned_cols=50 Identities=18% Similarity=0.116 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHHHHHHHHHHHHHHH
Q 039281 44 FICCFCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKERVFWLCVYMLSIAY 93 (165)
Q Consensus 44 f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y 93 (165)
|---+..+--|..|+-|+.|| .+.|+.|+|+.+|.+++...+.-...-+-
T Consensus 214 ~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~ 274 (302)
T 3p8l_A 214 FAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGS 274 (302)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 434444444599999998764 57799999999999999877766655443
No 13
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=41.93 E-value=26 Score=29.69 Aligned_cols=50 Identities=20% Similarity=0.084 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHHHHHHHHHHHHHH
Q 039281 43 VFICCFCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKERVFWLCVYMLSIA 92 (165)
Q Consensus 43 ~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~~~~l~~~ll~~~ 92 (165)
-|---+..+--|..|+-|+.|| -+.|+.|+|+.+|.+++.....-...-+
T Consensus 249 ~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A 309 (335)
T 2h8o_A 249 LFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEA 309 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445599999999875 4578999999999887766655544433
No 14
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=40.90 E-value=32 Score=28.55 Aligned_cols=51 Identities=24% Similarity=0.154 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHHHHHHHHHHHHHH
Q 039281 42 TVFICCFCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKERVFWLCVYMLSIA 92 (165)
Q Consensus 42 ~~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~~~~l~~~ll~~~ 92 (165)
.-|---+..+--|..|+-|+.|| -+.|+.|+|+.+|.+++...+.-...-+
T Consensus 204 ~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A 265 (301)
T 1rtr_A 204 ESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAA 265 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445455599999999875 4568999999999888766555444433
No 15
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=39.71 E-value=31 Score=28.63 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHhccCChhhhh---------hcCCcchhHHhhHHHHHHHHHHHHHHHH
Q 039281 43 VFICCFCIASAFLKDLHDVDGDK---------EFGIETLSVKLGKERVFWLCVYMLSIAY 93 (165)
Q Consensus 43 ~f~~~f~~~i~i~KDi~DieGDr---------~~Gi~Tlav~lG~~~~~~l~~~ll~~~y 93 (165)
-|---+..+--|..|+-|+.||. ..|..|+|+.+|.+++.....-++.-+.
T Consensus 202 ~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d~gK~T~p~l~~l~~a~~~~~~~~~~a~ 261 (291)
T 3npk_A 202 KLGLKLGLIFQINDDIIDVTTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLNECE 261 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHC----------------CCHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCChHHHCCccchhcCcchHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444455999999999875 3689999999999998866655555443
No 16
>2hdi_B Colicin-IA; outer membrane, iron transport, TONB BOX, signal transductio colicin I receptor, receptor ligand, membrane protein; HET: LDA; 2.50A {Escherichia coli}
Probab=38.95 E-value=9.2 Score=27.55 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhc-----cCChhhhhhc
Q 039281 46 CCFCIASAFLKD-----LHDVDGDKEF 67 (165)
Q Consensus 46 ~~f~~~i~i~KD-----i~DieGDr~~ 67 (165)
+.+.--..|.+| .||+|||++-
T Consensus 67 s~ldy~~nil~drnpvvtedvegdkki 93 (113)
T 2hdi_B 67 SGLDYKRNILNDRNPVVTEDVEGDKKI 93 (113)
T ss_dssp CHHHHHHHTSCCCCSCCSSCHHHHHHH
T ss_pred cchhhhhhhhcCCCCeeecccccchhh
Confidence 345556778888 4899999873
No 17
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=35.74 E-value=85 Score=25.97 Aligned_cols=58 Identities=16% Similarity=0.105 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhhh-hcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 38 LMFATVFICCFCIASAFLKDLHDVDGDK-EFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 38 ~~~~~~f~~~f~~~i~i~KDi~DieGDr-~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
..-+++.+=++-.+-.|-.|+|++++|. ++|..|.-.++|...+...+-.++..+|-.
T Consensus 62 ~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~ 120 (291)
T 3npk_A 62 ALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLV 120 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcccccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHH
Confidence 4445555566666677999999888765 679999999999998888887777776643
No 18
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=35.19 E-value=76 Score=26.42 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhhh-hcCCcchhHHhhHHHHHHHHHHHHHHHHHHH
Q 039281 38 LMFATVFICCFCIASAFLKDLHDVDGDK-EFGIETLSVKLGKERVFWLCVYMLSIAYGAA 96 (165)
Q Consensus 38 ~~~~~~f~~~f~~~i~i~KDi~DieGDr-~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~ 96 (165)
..-+++.+=++-.+-.|-.|+|++++|. ++|..|.-.++|.+.+...+-.++..+|-..
T Consensus 73 ~~~~A~avEliH~asLIHDDIP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l 132 (302)
T 3p8l_A 73 DYQVAASLEMIHTYSLIHDDLPAMDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLL 132 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCchhccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHH
Confidence 4445555666666777999998888875 5799999999999988887877777776443
No 19
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=34.77 E-value=94 Score=25.54 Aligned_cols=59 Identities=22% Similarity=0.297 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhhh-hcCCcchhHHhhHHHHHHHHHHHHHHHHHHH
Q 039281 38 LMFATVFICCFCIASAFLKDLHDVDGDK-EFGIETLSVKLGKERVFWLCVYMLSIAYGAA 96 (165)
Q Consensus 38 ~~~~~~f~~~f~~~i~i~KDi~DieGDr-~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~ 96 (165)
..-+++.+=++-.+-.|-.|+|.+++|. ++|..|.-.++|...+...+-.++..+|-..
T Consensus 66 ~~~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l 125 (299)
T 1rqj_A 66 LDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSIL 125 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHhCCChhhcCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHH
Confidence 3445555566666667999998887764 7899999999999988877777777665443
No 20
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=32.85 E-value=96 Score=25.51 Aligned_cols=59 Identities=19% Similarity=0.212 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhhh-hcCCcchhHHhhHHHHHHHHHHHHHHHHHHH
Q 039281 38 LMFATVFICCFCIASAFLKDLHDVDGDK-EFGIETLSVKLGKERVFWLCVYMLSIAYGAA 96 (165)
Q Consensus 38 ~~~~~~f~~~f~~~i~i~KDi~DieGDr-~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~ 96 (165)
..-+++.+=++-.+-.|-.|+|.+++|. ++|..|.=.++|.+.+...+-.++.-+|-..
T Consensus 68 ~~~~A~avEliH~asLIHDDIP~~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l 127 (284)
T 2ftz_A 68 LLDVAVAVELFHTASLIHDDLPPIDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQI 127 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCchhcCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666667999998887765 7899999999999988888877777766543
No 21
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=31.97 E-value=1.9e+02 Score=22.88 Aligned_cols=75 Identities=8% Similarity=-0.042 Sum_probs=39.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHH-HHHHHHccCCchhhHHHHHHHHHHH
Q 039281 74 VKLGKERVFWLCVYMLSIAYGAAVVVGASSS---ILLSKLLTIISHCILASSL-WLRARTVDLSSNTSTFSFYMFIWKA 148 (165)
Q Consensus 74 v~lG~~~~~~l~~~ll~~~y~~~i~~g~~~~---~~~~~~~~~~~H~~l~~~l-~~ra~~vdl~sk~~i~sfY~fIWkL 148 (165)
-|+|+|++..++..+..+........+...+ ......+...+.....+.. -.-++..+.+++....+.++..+.+
T Consensus 86 dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 86 KKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 3789999988888877776665533332221 1222333344443333222 1223334555555556677766654
No 22
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=31.20 E-value=1e+02 Score=25.53 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhh-hhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 38 LMFATVFICCFCIASAFLKDLHDVDGD-KEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 38 ~~~~~~f~~~f~~~i~i~KDi~DieGD-r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
..-+++.+=++-.+-.|-.|+|.+++| .++|..|.=.++|...+...+-.++..+|-.
T Consensus 63 ~~~~A~avEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~ 121 (297)
T 3m0g_A 63 AMPAALAVEALHAYSLVHDDMPCMDNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFEL 121 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCccccCCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHH
Confidence 444555556666667799999977776 5689999999999998877777777666543
No 23
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=30.71 E-value=92 Score=25.72 Aligned_cols=57 Identities=18% Similarity=0.080 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhh-hhcCCcchhHHhhHHHHHHHHHHHHHHHHHHH
Q 039281 40 FATVFICCFCIASAFLKDLHDVDGD-KEFGIETLSVKLGKERVFWLCVYMLSIAYGAA 96 (165)
Q Consensus 40 ~~~~f~~~f~~~i~i~KDi~DieGD-r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~ 96 (165)
-+++.+=++-.+-.|-.|+|++++| .++|..|.=.++|...+...+-.++.-+|-.+
T Consensus 66 ~~A~avEliH~asLiHDDiP~~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l 123 (301)
T 1rtr_A 66 KSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELI 123 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666799999888776 56999999999999988888888777766543
No 24
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=28.53 E-value=2.2e+02 Score=22.53 Aligned_cols=23 Identities=0% Similarity=-0.216 Sum_probs=16.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Q 039281 75 KLGKERVFWLCVYMLSIAYGAAV 97 (165)
Q Consensus 75 ~lG~~~~~~l~~~ll~~~y~~~i 97 (165)
|+|+|++..++..+..+......
T Consensus 88 r~g~r~~l~~~~~~~~~~~~~~~ 110 (451)
T 1pw4_A 88 RSNPRVFLPAGLILAAAVMLFMG 110 (451)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHHHH
Confidence 67999988887777666555443
No 25
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=28.29 E-value=37 Score=28.33 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhccCChhhhh-----------hcCCcchhHHhhHHHH
Q 039281 42 TVFICCFCIASAFLKDLHDVDGDK-----------EFGIETLSVKLGKERV 81 (165)
Q Consensus 42 ~~f~~~f~~~i~i~KDi~DieGDr-----------~~Gi~Tlav~lG~~~~ 81 (165)
.-|---+..+--|..|+-|+.||. +.|+.|+|+.++.++.
T Consensus 197 ~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~~ 247 (325)
T 3aqb_B 197 KQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANL 247 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHhC
Confidence 334444555555999999988764 5799999999998765
No 26
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=27.47 E-value=88 Score=26.08 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 40 FATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 40 ~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
-+++.+=++-.+-.|-.|+.| +.|.++|..|.-.++|.+.+...+-.++..+|-.
T Consensus 61 ~~A~aiEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~ 115 (315)
T 3tc1_A 61 NLCTIVEMIQTASLLHDDVID-KATMRRKLPSINALFGNFNAVMLGDVFYSKAFFE 115 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-----------------CCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCC-CCCCcCCCccHHHHhCchHHHHHHHHHHHHHHHH
Confidence 455556666667779999988 5778899999999999998877777777766644
No 27
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=26.50 E-value=1.2e+02 Score=25.20 Aligned_cols=59 Identities=15% Similarity=0.059 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhh-hhcCCcchhHHhhHHHHHHHHHHHHHHHHHHH
Q 039281 38 LMFATVFICCFCIASAFLKDLHDVDGD-KEFGIETLSVKLGKERVFWLCVYMLSIAYGAA 96 (165)
Q Consensus 38 ~~~~~~f~~~f~~~i~i~KDi~DieGD-r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~ 96 (165)
..-+++.+=++-.+-.|-.|+|.+++| .++|..|.-.++|...+...+-.++..+|-.+
T Consensus 72 ~~~~A~aiEliH~aSLIHDDip~mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l 131 (313)
T 3lom_A 72 LDIIAAALELTHCYSLIHDDLPAMDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVL 131 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCcccccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 444555556666666799999977776 46899999999999988888877777666543
No 28
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=26.10 E-value=1.8e+02 Score=22.57 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=12.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHH
Q 039281 75 KLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 75 ~lG~~~~~~l~~~ll~~~y~~ 95 (165)
|+|+|++..++..+..+....
T Consensus 61 r~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 61 RVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp TSCCCCCCHHHHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHHHHH
Confidence 556676666665555554443
No 29
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=25.65 E-value=1.4e+02 Score=25.04 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhh-hhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 38 LMFATVFICCFCIASAFLKDLHDVDGD-KEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 38 ~~~~~~f~~~f~~~i~i~KDi~DieGD-r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
..-+++.+=++-.+-.|-.|+|.++.| .++|..|.-.++|...+...+-.++..+|-.
T Consensus 67 ~~~~A~avEliH~aSLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 125 (317)
T 4f62_A 67 TDASAAALESIHAYSLIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFEL 125 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHH
Confidence 344455556666666699999876665 5689999999999998887777777666643
No 30
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=25.47 E-value=1.1e+02 Score=25.68 Aligned_cols=56 Identities=21% Similarity=0.150 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhhh-hcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 40 FATVFICCFCIASAFLKDLHDVDGDK-EFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 40 ~~~~f~~~f~~~i~i~KDi~DieGDr-~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
-+++.+=++-.+-.|-.|+|.++.|. ++|..|.=.++|...+...+-.++..+|-.
T Consensus 74 ~~A~aiEliH~aSLIHDDiP~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 130 (309)
T 3pde_A 74 RPVMALELLHTYSLIHDDLPAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQW 130 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCchhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHH
Confidence 34455566666667999998888875 579999999999998877777777766644
No 31
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=25.02 E-value=1.6e+02 Score=24.44 Aligned_cols=59 Identities=15% Similarity=0.139 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhhh-hcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 37 SLMFATVFICCFCIASAFLKDLHDVDGDK-EFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 37 ~~~~~~~f~~~f~~~i~i~KDi~DieGDr-~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
...-+++.+=++-.+-.|-.|+|.++.|. ++|..|.=.++|...+...+-.++..+|-.
T Consensus 75 ~~~~~A~aiEliH~aSLIHDDIp~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 134 (311)
T 3llw_A 75 EYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFEL 134 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCccccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHH
Confidence 34445556666666677999998777765 679999999999998888888777766643
No 32
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=24.52 E-value=55 Score=27.77 Aligned_cols=39 Identities=23% Similarity=0.179 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHH
Q 039281 42 TVFICCFCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKER 80 (165)
Q Consensus 42 ~~f~~~f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~ 80 (165)
.-|---+..+--|..|+-|+.|| -+.|+.|+|+.++.++
T Consensus 218 ~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~~ 267 (345)
T 3oyr_A 218 RDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIAR 267 (345)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHHh
Confidence 33444455555599999999875 4568899999999764
No 33
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=24.28 E-value=38 Score=28.09 Aligned_cols=40 Identities=13% Similarity=0.141 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhccCChhhh----------hhcCCcchhHHhhHHHHHH
Q 039281 44 FICCFCIASAFLKDLHDVDGD----------KEFGIETLSVKLGKERVFW 83 (165)
Q Consensus 44 f~~~f~~~i~i~KDi~DieGD----------r~~Gi~Tlav~lG~~~~~~ 83 (165)
|---+..+--|..|+-|+.|| -+.|..|+|+.++.++..-
T Consensus 192 ~g~~lG~aFQi~DD~lD~~~d~~~GK~~g~Dl~egK~T~p~l~al~~~~~ 241 (299)
T 1v4e_A 192 LGVTIGTIYQMFDDIMDFAGMEKIGKDGFLDLKNGVASFPLVTAMEKFPE 241 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCTTSSCCCTTTTCCHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHccCccccCCCcchHhhCCCchHHHHHHHHhChH
Confidence 333444444599999999887 4468999999999887643
No 34
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=24.08 E-value=97 Score=25.19 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 40 FATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 40 ~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
-+++.+=++-.+-.|-.|++|.. | +.|..|.-.++|...+...+-.++..+|-.
T Consensus 69 ~~A~aiEliH~aSLIHDDI~D~d-~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~ 122 (273)
T 3qkc_B 69 AAAAAVHLMHVAAYTHENLPLTD-G-PMSKSEIQHKFDPNIELLTGDGIIPFGLEL 122 (273)
T ss_dssp HHHHHHHHHHHHHHHHHSCCBTT-B-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcccCc-c-CCCCCCchhhcCHHHHHHHHHHHHHHHHHH
Confidence 34445555666666999999975 3 678999999999998877777777777643
No 35
>4gnt_B Carbohydrate-responsive element-binding protein; protein-protein complex, alpha-alpha helical, protein-protei interaction, 14-3-3; 2.41A {Mus musculus}
Probab=23.91 E-value=35 Score=18.73 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q 039281 143 MFIWKASDCTYI 154 (165)
Q Consensus 143 ~fIWkLFy~EYl 154 (165)
.-||+..|.+|+
T Consensus 8 naiwrawyiqyv 19 (26)
T 4gnt_B 8 NAIWRAWYIQYV 19 (26)
T ss_dssp HHHHHHHHHHHT
T ss_pred hHHHHHHHHHHH
Confidence 358999999985
No 36
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=23.71 E-value=1.7e+02 Score=24.30 Aligned_cols=56 Identities=27% Similarity=0.313 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 39 MFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 39 ~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
.-+++.+=++-.+-.|-.|+.| +-|.++|..|.-.++|.+.+...+-.++.-+|-.
T Consensus 90 ~~~A~avEliH~asLiHDDi~D-~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~ 145 (348)
T 3apz_A 90 RGIAEITEMIHVASLLHDDVLD-DADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGA 145 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccC-CCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHH
Confidence 4455555666666778999988 5577899999999999998877777777766543
No 37
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=23.52 E-value=47 Score=28.42 Aligned_cols=38 Identities=16% Similarity=0.003 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhccCChhhhh----------hcCCcchhHHhhHHHH
Q 039281 44 FICCFCIASAFLKDLHDVDGDK----------EFGIETLSVKLGKERV 81 (165)
Q Consensus 44 f~~~f~~~i~i~KDi~DieGDr----------~~Gi~Tlav~lG~~~~ 81 (165)
|---+..+--|..|+-|+.||. +.|+.|+|+.+|.+++
T Consensus 252 ~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~T~p~l~al~~a 299 (374)
T 2qis_A 252 ILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKCSWLVVQCLQRA 299 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCCCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHccCChhhcCCchhHHHcCCccHHHHHHHHhC
Confidence 3334444444999999998864 5799999999998764
No 38
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=23.11 E-value=47 Score=27.82 Aligned_cols=40 Identities=25% Similarity=0.129 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhhh-----------cCCcchhHHhhHHH
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGDKE-----------FGIETLSVKLGKER 80 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGDr~-----------~Gi~Tlav~lG~~~ 80 (165)
+.-|---+..+--|..|+-|+.||.+ .|+.|+|+.++.++
T Consensus 203 l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~ 253 (342)
T 1wy0_A 203 LSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIVAHFFEN 253 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHHHHHHHh
No 39
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=22.55 E-value=42 Score=28.35 Aligned_cols=40 Identities=20% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccCChhhhh-----------hcCCcchhHHhhHHH
Q 039281 41 ATVFICCFCIASAFLKDLHDVDGDK-----------EFGIETLSVKLGKER 80 (165)
Q Consensus 41 ~~~f~~~f~~~i~i~KDi~DieGDr-----------~~Gi~Tlav~lG~~~ 80 (165)
+.-|---+..+--|..|+-|+.||. +.|+.|+|+.++.++
T Consensus 205 l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al~~ 255 (341)
T 3mzv_A 205 LFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHHHh
No 40
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=21.02 E-value=45 Score=28.18 Aligned_cols=38 Identities=8% Similarity=-0.220 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhccCChhhhh----------hcCCcchhHHhhHHHH
Q 039281 44 FICCFCIASAFLKDLHDVDGDK----------EFGIETLSVKLGKERV 81 (165)
Q Consensus 44 f~~~f~~~i~i~KDi~DieGDr----------~~Gi~Tlav~lG~~~~ 81 (165)
|---+..+--|..|+-|+.||. +.|+.|+|+.++.++.
T Consensus 238 ~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~T~p~l~al~~~ 285 (362)
T 1yhl_A 238 VAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKCSWLAVTFLGKA 285 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCchHHHHHHHHhC
Confidence 3334444445999999998764 5799999999987653
No 41
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=20.74 E-value=76 Score=26.29 Aligned_cols=37 Identities=22% Similarity=0.129 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhccCChhhhh-----hcCCcchhHHhhH
Q 039281 42 TVFICCFCIASAFLKDLHDVDGDK-----EFGIETLSVKLGK 78 (165)
Q Consensus 42 ~~f~~~f~~~i~i~KDi~DieGDr-----~~Gi~Tlav~lG~ 78 (165)
.-|---+..+--|..|+-|+.||. +.|+.|+|+.++.
T Consensus 193 ~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al 234 (295)
T 3ipi_A 193 SHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMK 234 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHH
Confidence 334444555555999999999865 5788999999983
No 42
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=20.45 E-value=1.5e+02 Score=24.49 Aligned_cols=57 Identities=19% Similarity=0.083 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhh-hhcCCcchhHHhhHHHHHHHHHHHHHHHHHHH
Q 039281 40 FATVFICCFCIASAFLKDLHDVDGD-KEFGIETLSVKLGKERVFWLCVYMLSIAYGAA 96 (165)
Q Consensus 40 ~~~~f~~~f~~~i~i~KDi~DieGD-r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~ 96 (165)
-+++.+=++-.+-.|-.|+|.+++| .++|..|.-.++|...+...+-.++..+|-.+
T Consensus 68 ~~A~aiEliH~asLIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l 125 (304)
T 3lsn_A 68 GAACAVELIHAYSLVHDDLPAMDDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSAL 125 (304)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCcccccCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666699999877666 46799999999999988877777777666443
Done!