Query 039281
Match_columns 165
No_of_seqs 174 out of 320
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 13:36:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039281.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039281hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rqja_ a.128.1.1 (A:) Farnesy 69.5 5.1 0.00037 31.0 6.5 58 40-97 68-126 (299)
2 d1rtra_ a.128.1.1 (A:) Farnesy 61.0 7.4 0.00054 29.9 5.8 56 40-95 65-121 (290)
3 d1rtra_ a.128.1.1 (A:) Farnesy 42.0 5.8 0.00042 30.5 2.2 35 48-82 209-254 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 33.2 11 0.00083 28.9 2.6 38 48-85 215-263 (299)
5 d2q80a1 a.128.1.1 (A:6-296) Ge 25.0 41 0.003 25.4 4.6 57 37-94 40-96 (291)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 21.2 1.4E+02 0.01 21.5 7.8 76 73-148 83-163 (447)
7 d1v4ea_ a.128.1.1 (A:) Octopre 20.0 1.6E+02 0.012 21.7 11.9 57 38-95 55-111 (280)
8 d1b24a2 d.95.2.1 (A:100-179) D 16.9 9.2 0.00067 24.7 -0.8 15 52-66 8-22 (80)
9 d1xioa_ f.13.1.1 (A:) Sensory 16.5 1.8E+02 0.013 20.7 16.9 31 133-163 156-186 (226)
10 d1sr9a1 a.5.7.1 (A:437-491) 2- 15.6 29 0.0021 20.7 1.4 12 143-154 42-53 (55)
No 1
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=69.53 E-value=5.1 Score=31.03 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhccCChhh-hhhcCCcchhHHhhHHHHHHHHHHHHHHHHHHHH
Q 039281 40 FATVFICCFCIASAFLKDLHDVDG-DKEFGIETLSVKLGKERVFWLCVYMLSIAYGAAV 97 (165)
Q Consensus 40 ~~~~f~~~f~~~i~i~KDi~DieG-Dr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~~i 97 (165)
-+++.+=++-.+-.+-.|++|.+. |.++|..|.-.++|.+.+...+-.++..++-...
T Consensus 68 ~~A~aiEllH~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~ 126 (299)
T d1rqja_ 68 APAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILS 126 (299)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHH
Confidence 345555666666668899999987 4799999999999999988877777777665543
No 2
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=61.01 E-value=7.4 Score=29.91 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHhccCChhhh-hhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 40 FATVFICCFCIASAFLKDLHDVDGD-KEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 40 ~~~~f~~~f~~~i~i~KDi~DieGD-r~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
-+++.+=++-.+-.|-.|++|+++| .++|..|.-.++|.+.+...+-.++..++-.
T Consensus 65 ~~A~avEllH~asLIHDDI~d~D~~~~RRg~pt~~~~~g~~~Ail~Gd~l~~~a~~l 121 (290)
T d1rtra_ 65 KSAIALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFEL 121 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcchhhhhhhhhhhcchhhHHHhhhhHHHHcCcchhHHHHHH
Confidence 3455556677777799999998775 5899999999999998887777766665554
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=42.00 E-value=5.8 Score=30.54 Aligned_cols=35 Identities=29% Similarity=0.242 Sum_probs=22.9
Q ss_pred HHHHHHHHhccCChhhh-----------hhcCCcchhHHhhHHHHH
Q 039281 48 FCIASAFLKDLHDVDGD-----------KEFGIETLSVKLGKERVF 82 (165)
Q Consensus 48 f~~~i~i~KDi~DieGD-----------r~~Gi~Tlav~lG~~~~~ 82 (165)
+..+--|..|+.|+.|| -+.|+.|+|+.+|.+++.
T Consensus 209 lG~aFQi~DD~lD~~g~~~~~GK~~g~Di~~gK~T~p~i~a~~~a~ 254 (290)
T d1rtra_ 209 LGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAE 254 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchHhhccCcccHhhcCCccHHHHHHHHHHH
Confidence 33334499999998764 467999999999988754
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=33.16 E-value=11 Score=28.89 Aligned_cols=38 Identities=29% Similarity=0.339 Sum_probs=28.2
Q ss_pred HHHHHHHHhccCChhh-----------hhhcCCcchhHHhhHHHHHHHH
Q 039281 48 FCIASAFLKDLHDVDG-----------DKEFGIETLSVKLGKERVFWLC 85 (165)
Q Consensus 48 f~~~i~i~KDi~DieG-----------Dr~~Gi~Tlav~lG~~~~~~l~ 85 (165)
+..+--|..|+.|+.| |-+.|..|+|+.+|.+++....
T Consensus 215 lGiaFQi~DD~lD~~~~~~~~GK~~g~Dl~egK~Tlp~i~~le~a~~~~ 263 (299)
T d1rqja_ 215 IGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKA 263 (299)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCCCHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccchhhcCCchhhHHHCCChhHHHHHHHHHHHHHH
Confidence 3333448899998875 5667899999999998865433
No 5
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.95 E-value=41 Score=25.39 Aligned_cols=57 Identities=16% Similarity=0.156 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHH
Q 039281 37 SLMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYG 94 (165)
Q Consensus 37 ~~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~ 94 (165)
.+.-+++.+=++-.+-.|-.|+.| +.|.++|..|.=.++|.+.+...+-.++..++-
T Consensus 40 ~~~~~a~aiEllH~asLihDDi~D-~~~~RRg~pt~~~~~G~~~Ail~gd~l~~~a~~ 96 (291)
T d2q80a1 40 KLQIIIEVTEMLHNASLLIDDIED-NSKLRRGFPVAHSIYGIPSVINSANYVYFLGLE 96 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccc-CcccccCCCccccccchhhhhhHHHHHHHHHHH
Confidence 344456666777777778999986 447889999999999999887777777666654
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=21.18 E-value=1.4e+02 Score=21.46 Aligned_cols=76 Identities=5% Similarity=-0.156 Sum_probs=36.2
Q ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHHHHHHH-HHHHHHHccCCchhhHHHHHHHHHH
Q 039281 73 SVKLGKERVFWLCVYMLSIAYGAAVVVGASS----SILLSKLLTIISHCILASS-LWLRARTVDLSSNTSTFSFYMFIWK 147 (165)
Q Consensus 73 av~lG~~~~~~l~~~ll~~~y~~~i~~g~~~----~~~~~~~~~~~~H~~l~~~-l~~ra~~vdl~sk~~i~sfY~fIWk 147 (165)
+-|+|+|++..++..+..+.....-.+.... .......+...+.....+. .-.-++..+.+++....+.++..+.
T Consensus 83 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 162 (447)
T d1pw4a_ 83 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN 162 (447)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccc
Confidence 3478999988877766655544433222111 1122333334444333221 1122333444555555555555554
Q ss_pred H
Q 039281 148 A 148 (165)
Q Consensus 148 L 148 (165)
+
T Consensus 163 ~ 163 (447)
T d1pw4a_ 163 V 163 (447)
T ss_dssp H
T ss_pred h
Confidence 3
No 7
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=20.04 E-value=1.6e+02 Score=21.70 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccCChhhhhhcCCcchhHHhhHHHHHHHHHHHHHHHHHH
Q 039281 38 LMFATVFICCFCIASAFLKDLHDVDGDKEFGIETLSVKLGKERVFWLCVYMLSIAYGA 95 (165)
Q Consensus 38 ~~~~~~f~~~f~~~i~i~KDi~DieGDr~~Gi~Tlav~lG~~~~~~l~~~ll~~~y~~ 95 (165)
..-+++.+=++-.+-.|-.|+.| +.|.++|..|.-.++|...+...+-.++..++-.
T Consensus 55 ~~~~AaaiEliH~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~a~~~ 111 (280)
T d1v4ea_ 55 AISSLAALELVHLASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVSAFHT 111 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHhhhhc
Confidence 33344455666677778999998 7789999999999999999887777776665543
No 8
>d1b24a2 d.95.2.1 (A:100-179) DNA endonuclease I-dmoI {Archaeon Desulfurococcus mobilis [TaxId: 2274]}
Probab=16.93 E-value=9.2 Score=24.69 Aligned_cols=15 Identities=47% Similarity=0.663 Sum_probs=12.6
Q ss_pred HHHHhccCChhhhhh
Q 039281 52 SAFLKDLHDVDGDKE 66 (165)
Q Consensus 52 i~i~KDi~DieGDr~ 66 (165)
++.+|.+.|-|||+.
T Consensus 8 ~AFI~GLYdAEGDKt 22 (80)
T d1b24a2 8 IAFIKGLYVAEGDKT 22 (80)
T ss_dssp HHHHHHHHHHHSCTT
T ss_pred HHHHHhhhhccccch
Confidence 567889999999975
No 9
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=16.47 E-value=1.8e+02 Score=20.75 Aligned_cols=31 Identities=10% Similarity=0.007 Sum_probs=22.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039281 133 SSNTSTFSFYMFIWKASDCTYILNQIPHASS 163 (165)
Q Consensus 133 ~sk~~i~sfY~fIWkLFy~EYll~P~~~~~~ 163 (165)
+.+++.++.|..+-.++..--.++|.+..++
T Consensus 156 ~~~~~~~~~~~~l~~~~~v~W~~YPi~~~l~ 186 (226)
T d1xioa_ 156 TQSSELANLYDKLVTYFTVLWIGYPIVWIIG 186 (226)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445667788777778888888888876654
No 10
>d1sr9a1 a.5.7.1 (A:437-491) 2-isopropylmalate synthase LeuA, communication domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.62 E-value=29 Score=20.70 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHH
Q 039281 143 MFIWKASDCTYI 154 (165)
Q Consensus 143 ~fIWkLFy~EYl 154 (165)
.-||++|--||+
T Consensus 42 ~~I~~~F~~~Yl 53 (55)
T d1sr9a1 42 KEMWDAFAEEYL 53 (55)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 469999999995
Done!