Your job contains 1 sequence.
>039282
MAKKNPRGAPIRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTA
VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV
AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELAR
QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLF
VAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRAL
YERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQ
FATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAML
PKKLKKRRQIASDNGLSAGYEEYIDYLFPEESQKTNFKILEAASKWIKKKIVSNDQ
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039282
(476 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi... 751 1.3e-118 4
TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi... 717 4.6e-109 4
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein... 627 4.5e-87 4
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote... 622 5.7e-87 4
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote... 622 5.7e-87 4
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1... 624 7.2e-87 4
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin... 624 7.2e-87 4
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein... 616 2.4e-86 4
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "... 618 3.9e-86 4
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr... 611 5.5e-85 4
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein... 603 1.4e-84 4
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein... 596 8.6e-83 4
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi... 458 1.0e-81 4
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha... 547 4.5e-80 4
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi... 702 6.2e-75 3
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-... 552 1.7e-73 4
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer... 523 2.2e-69 3
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ... 516 1.2e-67 4
GENEDB_PFALCIPARUM|PFD0180c - symbol:PFD0180c "CGI-201 pr... 409 5.1e-51 3
UNIPROTKB|Q8I1Z2 - symbol:PFD0180c "CGI-201 protein, shor... 409 5.1e-51 3
CGD|CAL0004743 - symbol:orf19.332 species:5476 "Candida a... 397 9.9e-46 3
SGD|S000004107 - symbol:CLF1 "Member of the NineTeen Comp... 386 5.8e-45 3
UNIPROTKB|F1N9U0 - symbol:PRPF6 "Uncharacterized protein"... 169 3.6e-09 1
ZFIN|ZDB-GENE-030131-2575 - symbol:prpf6 "PRP6 pre-mRNA p... 166 7.7e-09 1
UNIPROTKB|E2RPW8 - symbol:PRPF6 "Uncharacterized protein"... 163 1.6e-08 1
UNIPROTKB|Q2KJJ0 - symbol:PRPF6 "Pre-mRNA-processing fact... 161 2.7e-08 1
MGI|MGI:1922946 - symbol:Prpf6 "PRP6 pre-mRNA splicing fa... 159 4.5e-08 1
RGD|1307103 - symbol:Prpf6 "PRP6 pre-mRNA processing fact... 158 5.8e-08 1
TAIR|locus:2086132 - symbol:HCF107 "high chlorophyll fluo... 152 1.6e-07 1
UNIPROTKB|O94906 - symbol:PRPF6 "Pre-mRNA-processing fact... 152 2.6e-07 1
POMBASE|SPBC6B1.07 - symbol:prp1 "U4/U6 x U5 tri-snRNP co... 150 4.2e-07 1
ASPGD|ASPL0000068414 - symbol:AN7447 species:162425 "Emer... 152 5.3e-07 2
UNIPROTKB|Q14690 - symbol:PDCD11 "Protein RRP5 homolog" s... 147 2.1e-06 1
FB|FBgn0036828 - symbol:CG6841 species:7227 "Drosophila m... 139 6.9e-06 1
WB|WBGene00013343 - symbol:prp-6 species:6239 "Caenorhabd... 137 1.2e-05 1
ZFIN|ZDB-GENE-040426-685 - symbol:xab2 "XPA binding prote... 135 1.7e-05 1
RGD|1304933 - symbol:Pdcd11 "programmed cell death 11" sp... 138 2.0e-05 1
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11... 136 3.3e-05 1
FB|FBgn0033859 - symbol:CG6197 species:7227 "Drosophila m... 131 4.9e-05 1
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p... 134 5.5e-05 1
TAIR|locus:2007973 - symbol:CSTF77 species:3702 "Arabidop... 129 6.3e-05 1
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s... 137 6.8e-05 2
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s... 137 6.8e-05 2
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p... 133 7.1e-05 1
UNIPROTKB|J9PAI6 - symbol:XAB2 "Uncharacterized protein" ... 125 0.00019 1
WB|WBGene00016837 - symbol:C50F2.3 species:6239 "Caenorha... 125 0.00021 1
UNIPROTKB|P91175 - symbol:C50F2.3 "Protein C50F2.3" speci... 125 0.00021 1
UNIPROTKB|E2RPV4 - symbol:XAB2 "Uncharacterized protein" ... 125 0.00021 1
SGD|S000002857 - symbol:UTP6 "Nucleolar protein" species:... 118 0.00023 2
UNIPROTKB|F6RY07 - symbol:XAB2 "Uncharacterized protein" ... 124 0.00027 1
DICTYBASE|DDB_G0280363 - symbol:DDB_G0280363 species:4468... 126 0.00027 1
ZFIN|ZDB-GENE-030131-4076 - symbol:pdcd11 "programmed cel... 127 0.00031 1
MGI|MGI:1914689 - symbol:Xab2 "XPA binding protein 2" spe... 123 0.00035 1
RGD|621217 - symbol:Xab2 "XPA binding protein 2" species:... 123 0.00035 1
WB|WBGene00017768 - symbol:F25B4.5 species:6239 "Caenorha... 89 0.00039 2
UNIPROTKB|F1PLK8 - symbol:PDCD11 "Uncharacterized protein... 126 0.00041 1
TAIR|locus:2128751 - symbol:EMB2770 "EMBRYO DEFECTIVE 277... 123 0.00044 1
UNIPROTKB|F1SCH5 - symbol:XAB2 "Uncharacterized protein" ... 122 0.00045 1
POMBASE|SPBC4B4.09 - symbol:usp105 "U1 snRNP-associated p... 111 0.00055 3
DICTYBASE|DDB_G0272374 - symbol:prpf6 "pre-mRNA processin... 122 0.00055 1
ASPGD|ASPL0000046692 - symbol:AN1635 species:162425 "Emer... 118 0.00076 1
CGD|CAL0000714 - symbol:orf19.2330 species:5476 "Candida ... 116 0.00079 1
UNIPROTKB|Q59WH2 - symbol:UTP6 "Potential U3 snoRNP prote... 116 0.00079 1
UNIPROTKB|F5H315 - symbol:XAB2 "Pre-mRNA-splicing factor ... 119 0.00095 1
UNIPROTKB|Q9HCS7 - symbol:XAB2 "Pre-mRNA-splicing factor ... 119 0.00095 1
>TAIR|locus:2152965 [details] [associations]
symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
Uniprot:F4JZX8
Length = 705
Score = 751 (269.4 bits), Expect = 1.3e-118, Sum P(4) = 1.3e-118
Identities = 141/223 (63%), Positives = 170/223 (76%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFG------EQKSVDPTELYDYRLHKRNDFEDSIRRVPG 57
KN API+ TAEQILRE++E +QK D TEL DYRL +R +FED IRR
Sbjct: 31 KNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELSDYRLRRRKEFEDQIRRARW 90
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+ VW+ YA+WE SQ ++ RARS+WE A+E D RNHTLW KYAEFEM NKF+N ARNVWD
Sbjct: 91 NIQVWVKYAQWEESQKDYARARSVWERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWD 150
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
RAV +LP VDQLWYKYI MEEI GN+A AR IF+RWM W+PDQQ WLS+IKFELRY ++E
Sbjct: 151 RAVTLLPRVDQLWYKYIHMEEILGNIAGARQIFERWMDWSPDQQGWLSFIKFELRYNEIE 210
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
AR ++ER V CHP V S++I+YAKFEM+ GE+ R R+VYERA
Sbjct: 211 RARTIYERFVLCHPKV-SAYIRYAKFEMKGGEVARCRSVYERA 252
Score = 274 (101.5 bits), Expect = 1.3e-118, Sum P(4) = 1.3e-118
Identities = 54/102 (52%), Positives = 69/102 (67%)
Query: 374 VFEKGINYYKTSAPXXXXXXXXXXXXXXNMERSFGELGDVNLVQAMLPKKLKKRRQIASD 433
+F++ YYK S P NME SFG LGDV++VQ+ LPKKLKKR+ I +
Sbjct: 603 IFDRANTYYKDSTPELKEERATLLEDWLNMESSFGNLGDVSIVQSKLPKKLKKRKAITRE 662
Query: 434 NGLSAGYEEYIDYLFPEESQKTNFKILEAASKWIKKKIVSND 475
+G S YEEYIDYL+PEESQ TN KILEAA KW K+K+ +++
Sbjct: 663 DG-STEYEEYIDYLYPEESQTTNLKILEAAYKWKKQKVAASE 703
Score = 203 (76.5 bits), Expect = 5.0e-49, Sum P(3) = 5.0e-49
Identities = 50/168 (29%), Positives = 85/168 (50%)
Query: 61 VWINYAKWEGSQNE-FDRARSMWELALEEDCRNH----TLWCKYAEFEMINKFINHARNV 115
+WINYA +E + E +R R ++ L+ + +W A+FE+ + AR +
Sbjct: 386 LWINYALFEEIETEDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQI 445
Query: 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYE 174
A+ P D+++ KYI +E GN+ R +++R++ W+P+ AW Y + E
Sbjct: 446 LGNAIGKAPK-DKIFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELERSLV 504
Query: 175 QVELARQVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYER 219
+ E AR +FE + P + W Y FE+ GE++R R +YER
Sbjct: 505 ETERARAIFELAIS-QPALDMPELLWKAYIDFEISEGELERTRALYER 551
Score = 202 (76.2 bits), Expect = 6.3e-49, Sum P(3) = 6.3e-49
Identities = 61/224 (27%), Positives = 108/224 (48%)
Query: 15 AEQILRES---QEHFGEQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKWEG 70
AE + R+ ++ +G+++ ++ D + KR +ED +R+ P + W +Y + E
Sbjct: 298 AEDLYRKFVAFEKQYGDKEGIE-----DAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEE 352
Query: 71 SQNEFDRARSMWELAL------EEDC---RNHTLWCKYAEFEMIN-KFINHARNVWDRAV 120
S DR R ++E A+ EE R LW YA FE I + I R+V+ +
Sbjct: 353 SVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRDVYRECL 412
Query: 121 AVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQV 176
++PH ++W + E N+ AR I + P + + YI+ EL+ +
Sbjct: 413 KLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLGNM 472
Query: 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ R+++ER ++ P +W KYA+ E E +RAR ++E A
Sbjct: 473 DRCRKLYERYLEWSPENCYAWSKYAELERSLVETERARAIFELA 516
Score = 200 (75.5 bits), Expect = 1.1e-50, Sum P(4) = 1.1e-50
Identities = 54/175 (30%), Positives = 94/175 (53%)
Query: 53 RRVPGDT---AVWINYAKWEGSQNEF-DRARSMWELALEEDCRNHTLWCKYAEFEMINKF 108
R + GD +W+ YA++E +N+F + AR++W+ A+ R LW KY E I
Sbjct: 117 RAIEGDYRNHTLWLKYAEFE-MKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILGN 175
Query: 109 INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIK 168
I AR +++R + P Q W +I+ E + AR I++R++ P A++ Y K
Sbjct: 176 IAGARQIFERWMDWSPD-QQGWLSFIKFELRYNEIERARTIYERFVLCHPKVSAYIRYAK 234
Query: 169 FELRYEQVELARQVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYERA 220
FE++ +V R V+ER + + + ++ +A+FE R E++RAR +Y+ A
Sbjct: 235 FEMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIYKFA 289
Score = 143 (55.4 bits), Expect = 4.0e-32, Sum P(2) = 4.0e-32
Identities = 38/131 (29%), Positives = 62/131 (47%)
Query: 50 DSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFI 109
++I + P D ++ Y + E DR R ++E LE N W KYAE E
Sbjct: 448 NAIGKAPKDK-IFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELERSLVET 506
Query: 110 NHARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSY 166
AR +++ A++ P +D LW YI E G + R +++R + T + W+S+
Sbjct: 507 ERARAIFELAISQ-PALDMPELLWKAYIDFEISEGELERTRALYERLLDRTKHYKVWVSF 565
Query: 167 IKFELRYEQVE 177
KFE ++E
Sbjct: 566 AKFEASAAELE 576
Score = 137 (53.3 bits), Expect = 1.3e-118, Sum P(4) = 1.3e-118
Identities = 32/72 (44%), Positives = 39/72 (54%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASA--LSKDGGNPDLSEADL 339
KAYI FE S+G TKH KVW+S+AKFEASA L +D + E D+
Sbjct: 530 KAYIDFEISEGELERTRALYERLLDRTKHYKVWVSFAKFEASAAELEEDENEDEDQEEDV 589
Query: 340 CERKKQSIRGAR 351
E KK I+ AR
Sbjct: 590 IEHKKDCIKRAR 601
Score = 118 (46.6 bits), Expect = 3.6e-40, Sum P(3) = 3.6e-40
Identities = 39/157 (24%), Positives = 71/157 (45%)
Query: 60 AVWINYAKWEGSQNEFDRARSMWELALE---EDCRNHTLWCKYAEFEMINKFINHARNVW 116
+ +I YAK+E E R RS++E A E +D L+ +AEFE K + AR ++
Sbjct: 227 SAYIRYAKFEMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKEVERARFIY 286
Query: 117 DRAVAVLP--HVDQLWYKYIRMEEIAGN--------VAAARLIFDRWMHWTPDQ-QAWLS 165
A+ +P + L+ K++ E+ G+ V R ++ + +P +W
Sbjct: 287 KFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKSPSNYDSWFD 346
Query: 166 YIKFELRYEQVELARQVFERLVQCHPNVVSS--WIKY 200
Y++ E + R+++ER + P W +Y
Sbjct: 347 YVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRY 383
Score = 104 (41.7 bits), Expect = 4.8e-28, Sum P(2) = 4.8e-28
Identities = 26/101 (25%), Positives = 49/101 (48%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + W YA+ E S E +RAR+++ELA+ + + LW Y +F
Sbjct: 476 RKLYERYLEWSPENCYAWSKYAELERSLVETERARAIFELAISQPALDMPELLWKAYIDF 535
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNV 143
E+ + R +++R + H ++W + + E A +
Sbjct: 536 EISEGELERTRALYERLLDRTKHY-KVWVSFAKFEASAAEL 575
Score = 51 (23.0 bits), Expect = 1.3e-118, Sum P(4) = 1.3e-118
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 260 KEFGDWVLIEDAIVGK 275
K++GD IEDAIVGK
Sbjct: 310 KQYGDKEGIEDAIVGK 325
Score = 46 (21.3 bits), Expect = 4.6e-109, Sum P(4) = 4.6e-109
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 276 GKAPKDKA---YIHFEKSQGXXXXXXXXXXXXXXXT-KHLKVWISYAKFEASALSKD 328
GKAPKDK YI E G + ++ W YA+ E S + +
Sbjct: 451 GKAPKDKIFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELERSLVETE 507
Score = 43 (20.2 bits), Expect = 1.1e-21, Sum P(2) = 1.1e-21
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 310 HLKVWISYAKFEAS 323
+++VW+ YA++E S
Sbjct: 91 NIQVWVKYAQWEES 104
Score = 42 (19.8 bits), Expect = 1.2e-108, Sum P(4) = 1.2e-108
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 312 KVWISYAKFEASALSKDGGNPDLSEA 337
K+W+ A+FE L+ G L A
Sbjct: 424 KIWLLAAQFEIRQLNLTGARQILGNA 449
Score = 42 (19.8 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 284 YIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFE 321
YIH E+ G + + W+S+ KFE
Sbjct: 166 YIHMEEILGNIAGARQIFERWMDWSPDQQGWLSFIKFE 203
Score = 41 (19.5 bits), Expect = 1.5e-108, Sum P(4) = 1.5e-108
Identities = 6/13 (46%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +WI+YA FE
Sbjct: 382 RYIYLWINYALFE 394
Score = 38 (18.4 bits), Expect = 1.7e-80, Sum P(3) = 1.7e-80
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 425 KKRRQIASDNGLS-AGYEEYIDYLFPEESQKTNFKILE 461
K+R Q + S + Y+ + DY+ EES +I E
Sbjct: 325 KRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIRE 362
Score = 37 (18.1 bits), Expect = 4.9e-21, Sum P(2) = 4.9e-21
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 313 VWISYAKFE 321
+W+ YA+FE
Sbjct: 128 LWLKYAEFE 136
>TAIR|locus:2161363 [details] [associations]
symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
Uniprot:Q9FNM3
Length = 673
Score = 717 (257.5 bits), Expect = 4.6e-109, Sum P(4) = 4.6e-109
Identities = 137/224 (61%), Positives = 169/224 (75%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFG------EQKSVDPTELYDYRLHKRNDFEDSIRRVPG 57
KN AP++ TAEQILRE++E +QK D TEL DYRL +R +FED IRR
Sbjct: 17 KNKTPAPVQITAEQILREARERQEAEIRPPKQKITDSTELSDYRLRRRKEFEDQIRRARW 76
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+ VW+ YAKWE SQ ++ RARS+WE ALE + RNHTLW KYAEFEM NKF+N+ARNVWD
Sbjct: 77 NIQVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWD 136
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
R+V +LP VDQLW KYI MEE GNV AR IF+RWM+W+PDQ+AWL +IKFELRY ++E
Sbjct: 137 RSVTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMNWSPDQKAWLCFIKFELRYNEIE 196
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRG-EIDRARNVYERA 220
AR ++ER V CHP V S++I+YAKFEM+RG ++ AR VYERA
Sbjct: 197 RARSIYERFVLCHPKV-SAFIRYAKFEMKRGGQVKLAREVYERA 239
Score = 251 (93.4 bits), Expect = 4.6e-109, Sum P(4) = 4.6e-109
Identities = 52/101 (51%), Positives = 64/101 (63%)
Query: 370 SSSGVFEKGINYYKTSAPXXXXXXXXXXXXXXNMERSFGELGDVNLVQAMLPKKLKKRRQ 429
S+ +F++ YYK + P NME FGELGDV++VQ+ LPKKLKKR+
Sbjct: 569 SARVIFDRANTYYKDTTPELEEERATLLEDWLNMETGFGELGDVSVVQSKLPKKLKKRKM 628
Query: 430 IASDNGLSAGYEEYIDYLFPEESQKTNFKILEAASKWIKKK 470
+ ++G S YEEY DYLFPEES TN KILEAA KW K K
Sbjct: 629 TSREDG-STEYEEYFDYLFPEESGTTNLKILEAAYKWKKLK 668
Score = 203 (76.5 bits), Expect = 1.5e-35, Sum P(2) = 1.5e-35
Identities = 51/170 (30%), Positives = 87/170 (51%)
Query: 61 VWINYAKWEGSQN-EFDRARSMWELALEEDCRNHT------LWCKYAEFEMINKFINHAR 113
+WINYA +E + + +R R ++ L+ HT +W AE+E+ + AR
Sbjct: 373 LWINYALYEEIETKDVERTRDVYRECLK--LIPHTKFSFAKIWLLAAEYEIRQLNLTGAR 430
Query: 114 NVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELR 172
+ A+ P V +++ KYI ME N+ R +++R++ W+P+ AW +Y +FE+
Sbjct: 431 QILGNAIGKAPKV-KIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEIS 489
Query: 173 YEQVELARQVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYER 219
+ E AR +FE + P + W Y FE+ GE ++ R +YER
Sbjct: 490 LAETERARAIFELAIS-QPALDMPELLWKTYIDFEISEGEFEKTRALYER 538
Score = 201 (75.8 bits), Expect = 5.9e-44, Sum P(4) = 5.9e-44
Identities = 57/187 (30%), Positives = 102/187 (54%)
Query: 39 DYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEF-DRARSMWELALEEDCRNHTLWC 97
DY R+ +E ++ + +W+ YA++E +N+F + AR++W+ ++ R LW
Sbjct: 93 DYA-RARSVWERALEGEYRNHTLWVKYAEFE-MKNKFVNNARNVWDRSVTLLPRVDQLWE 150
Query: 98 KYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT 157
KY E + AR +++R + P + W +I+ E + AR I++R++
Sbjct: 151 KYIYMEEKLGNVTGARQIFERWMNWSPD-QKAWLCFIKFELRYNEIERARSIYERFVLCH 209
Query: 158 PDQQAWLSYIKFEL-RYEQVELARQVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRA 213
P A++ Y KFE+ R QV+LAR+V+ER V N + ++ +A+FE R E++RA
Sbjct: 210 PKVSAFIRYAKFEMKRGGQVKLAREVYERAVDKLANDEEAEILFVSFAEFEERCKEVERA 269
Query: 214 RNVYERA 220
R +Y+ A
Sbjct: 270 RFIYKFA 276
Score = 201 (75.8 bits), Expect = 3.5e-42, Sum P(3) = 3.5e-42
Identities = 59/228 (25%), Positives = 111/228 (48%)
Query: 11 IRK-TAEQILRES---QEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYA 66
IRK AE++ ++ ++ +G+++ ++ + KR ++ED + + P + W +Y
Sbjct: 280 IRKGRAEELYKKFVAFEKQYGDKEGIEDAIVGK----KRFEYEDEVSKNPLNYDSWFDYV 335
Query: 67 KWEGSQNEFDRARSMWELAL------EEDC---RNHTLWCKYAEFEMIN-KFINHARNVW 116
+ E S DR R ++E A+ +E R LW YA +E I K + R+V+
Sbjct: 336 RLEESVGNKDRIREIYERAIANVPPAQEKRFWQRYIYLWINYALYEEIETKDVERTRDVY 395
Query: 117 DRAVAVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR 172
+ ++PH ++W E N+ AR I + P + + YI+ EL+
Sbjct: 396 RECLKLIPHTKFSFAKIWLLAAEYEIRQLNLTGARQILGNAIGKAPKVKIFKKYIEMELK 455
Query: 173 YEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++ R+++ER ++ P +W YA+FE+ E +RAR ++E A
Sbjct: 456 LVNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFELA 503
Score = 140 (54.3 bits), Expect = 6.1e-29, Sum P(2) = 6.1e-29
Identities = 40/144 (27%), Positives = 68/144 (47%)
Query: 50 DSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFI 109
++I + P ++ Y + E DR R ++E LE N W YAEFE+
Sbjct: 435 NAIGKAP-KVKIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAET 493
Query: 110 NHARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSY 166
AR +++ A++ P +D LW YI E G R +++R + T + W+S+
Sbjct: 494 ERARAIFELAISQ-PALDMPELLWKTYIDFEISEGEFEKTRALYERLLDRTKHCKVWISF 552
Query: 167 IKFEL-----RYEQVELARQVFER 185
KFE + + ++ AR +F+R
Sbjct: 553 AKFEASASEHKEDGIKSARVIFDR 576
Score = 129 (50.5 bits), Expect = 8.7e-28, Sum P(2) = 8.7e-28
Identities = 45/168 (26%), Positives = 73/168 (43%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ A++E Q AR + A+ + ++ KY E E+ I+ R +++R +
Sbjct: 412 IWLLAAEYEIRQLNLTGARQILGNAIGK-APKVKIFKKYIEMELKLVNIDRCRKLYERFL 470
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-D--QQAWLSYIKFELRYEQVE 177
P W Y E AR IF+ + D + W +YI FE+ + E
Sbjct: 471 EWSPENCYAWRNYAEFEISLAETERARAIFELAISQPALDMPELLWKTYIDFEISEGEFE 530
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGE-----IDRARNVYERA 220
R ++ERL+ WI +AKFE E I AR +++RA
Sbjct: 531 KTRALYERLLD-RTKHCKVWISFAKFEASASEHKEDGIKSARVIFDRA 577
Score = 124 (48.7 bits), Expect = 2.9e-27, Sum P(2) = 2.9e-27
Identities = 33/115 (28%), Positives = 58/115 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + W NYA++E S E +RAR+++ELA+ + + LW Y +F
Sbjct: 463 RKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFELAISQPALDMPELLWKTYIDF 522
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGN-----VAAARLIFDR 152
E+ R +++R + H ++W + + E A + +AR+IFDR
Sbjct: 523 EISEGEFEKTRALYERLLDRTKHC-KVWISFAKFEASASEHKEDGIKSARVIFDR 576
Score = 103 (41.3 bits), Expect = 4.6e-109, Sum P(4) = 4.6e-109
Identities = 24/50 (48%), Positives = 27/50 (54%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALS-KDGG 330
K YI FE S+G TKH KVWIS+AKFEASA K+ G
Sbjct: 517 KTYIDFEISEGEFEKTRALYERLLDRTKHCKVWISFAKFEASASEHKEDG 566
Score = 103 (41.3 bits), Expect = 5.4e-32, Sum P(3) = 5.4e-32
Identities = 37/152 (24%), Positives = 71/152 (46%)
Query: 45 RNDFEDSIRRVPGDTA---VWINYAKWEGSQNEFDRARSMWELALEE--DCRNHTLWCKY 99
R +E ++ ++ D +++++A++E E +RAR +++ AL+ R L+ K+
Sbjct: 233 REVYERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELYKKF 292
Query: 100 AEFE--------MINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFD 151
FE + + + R ++ V+ P W+ Y+R+EE GN R I++
Sbjct: 293 VAFEKQYGDKEGIEDAIVGKKRFEYEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYE 352
Query: 152 RWMHWTPDQQA---WLSYIKFELRY---EQVE 177
R + P Q W YI + Y E++E
Sbjct: 353 RAIANVPPAQEKRFWQRYIYLWINYALYEEIE 384
Score = 51 (23.0 bits), Expect = 4.6e-109, Sum P(4) = 4.6e-109
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 260 KEFGDWVLIEDAIVGK 275
K++GD IEDAIVGK
Sbjct: 297 KQYGDKEGIEDAIVGK 312
Score = 48 (22.0 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 310 HLKVWISYAKFEASAL 325
+++VW+ YAK+E S +
Sbjct: 77 NIQVWVKYAKWEESQM 92
Score = 46 (21.3 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 404 ERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEESQKTNFKILE 461
E+ +G+ + A++ KK + S N L+ Y+ + DY+ EES +I E
Sbjct: 296 EKQYGDKEGIE--DAIVGKKRFEYEDEVSKNPLN--YDSWFDYVRLEESVGNKDRIRE 349
Score = 40 (19.1 bits), Expect = 1.8e-102, Sum P(4) = 1.8e-102
Identities = 16/52 (30%), Positives = 20/52 (38%)
Query: 276 GKAPKDKA---YIHFE-KSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEAS 323
GKAPK K YI E K ++ W +YA+FE S
Sbjct: 438 GKAPKVKIFKKYIEMELKLVNIDRCRKLYERFLEWSPENCYAWRNYAEFEIS 489
Score = 40 (19.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 9/38 (23%), Positives = 14/38 (36%)
Query: 284 YIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFE 321
YI+ E+ G + K W+ + KFE
Sbjct: 152 YIYMEEKLGNVTGARQIFERWMNWSPDQKAWLCFIKFE 189
Score = 39 (18.8 bits), Expect = 2.3e-102, Sum P(4) = 2.3e-102
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 312 KVWISYAKFEASALSKDGGNPDLSEA 337
K+W+ A++E L+ G L A
Sbjct: 411 KIWLLAAEYEIRQLNLTGARQILGNA 436
Score = 38 (18.4 bits), Expect = 3.0e-102, Sum P(4) = 3.0e-102
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +WI+YA +E
Sbjct: 369 RYIYLWINYALYE 381
Score = 38 (18.4 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 313 VWISYAKFE 321
+W+ YA+FE
Sbjct: 114 LWVKYAEFE 122
>UNIPROTKB|J9P5Z1 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
Length = 728
Score = 627 (225.8 bits), Expect = 4.5e-87, Sum P(4) = 4.5e-87
Identities = 123/228 (53%), Positives = 157/228 (68%)
Query: 1 MAK-KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSI 52
+AK KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+I
Sbjct: 56 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNI 115
Query: 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112
R+ + WI YA+WE S E RARS++E AL+ D RN TLW KYAE EM N+ +NHA
Sbjct: 116 RKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHA 175
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR 172
RN+WDRA+ LP V+Q WYKY MEE+ GN+A AR +F+RWM W P++QAW SYI FELR
Sbjct: 176 RNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQAWHSYINFELR 235
Query: 173 YEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
Y++V+ AR ++ER V HP+V +WIKYA+FE + G AR VYERA
Sbjct: 236 YKEVDRARTIYERFVLVHPDV-KNWIKYARFEEKHGYFAHARKVYERA 282
Score = 213 (80.0 bits), Expect = 1.9e-31, Sum P(4) = 1.9e-31
Identities = 50/163 (30%), Positives = 86/163 (52%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA+ E + + AR++W+ A+ R + W KY E + I AR V++R +
Sbjct: 158 LWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWM 217
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELAR 180
P +Q W+ YI E V AR I++R++ PD + W+ Y +FE ++ AR
Sbjct: 218 EWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHGYFAHAR 276
Query: 181 QVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYERA 220
+V+ER V+ + ++ +AKFE + E +R R +Y+ A
Sbjct: 277 KVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA 319
Score = 199 (75.1 bits), Expect = 2.8e-29, Sum P(3) = 2.8e-29
Identities = 59/225 (26%), Positives = 106/225 (47%)
Query: 11 IRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKWE 69
I K Q L ++ F E+K D + D + KR +E+ ++ P + W +Y +
Sbjct: 323 ISKQEAQELFKNYTIF-EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLV 381
Query: 70 GSQNEFDRARSMWELALEE----DCRNHT-----LWCKYAEFEMIN-KFINHARNVWDRA 119
S E + R ++E A+ + H LW YA +E + K R V+ +
Sbjct: 382 ESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQAS 441
Query: 120 VAVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ 175
+ ++PH ++W Y + E N+ AR + P + + YI+ EL+ +
Sbjct: 442 LELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLRE 501
Query: 176 VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ R+++E+ ++ P +SWIK+A+ E G+I+RAR +YE A
Sbjct: 502 FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELA 546
Score = 184 (69.8 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 45/166 (27%), Positives = 82/166 (49%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA++E Q AR ++ + C + L+ Y E E+ + + R ++++ +
Sbjct: 455 MWLLYAQFEIRQKNLPFARRALGTSIGK-CPKNKLFKGYIELELQLREFDRCRKLYEKFL 513
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM---HWTPDQQAWLSYIKFELRYEQVE 177
P W K+ +E I G++ AR I++ + + W SYI FE+ E+ E
Sbjct: 514 EFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETE 573
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEM---RRGEIDRARNVYERA 220
R ++ RL+Q V WI +A+FE+ + G + + R +YE A
Sbjct: 574 RTRNLYRRLLQ-RTQHVKVWISFAQFELSSRKEGSLAKCRQIYEEA 618
Score = 161 (61.7 bits), Expect = 4.5e-87, Sum P(4) = 4.5e-87
Identities = 29/70 (41%), Positives = 47/70 (67%)
Query: 402 NMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEES-QKTNFKIL 460
+ E FG + D V ++P+K+KKRR++ +D+G AG+EEY DY+FPE++ + N K+L
Sbjct: 640 SFEDEFGTVSDKERVDKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLL 699
Query: 461 EAASKWIKKK 470
A W K++
Sbjct: 700 AMAKLWKKQQ 709
Score = 154 (59.3 bits), Expect = 8.5e-20, Sum P(2) = 8.5e-20
Identities = 45/140 (32%), Positives = 69/140 (49%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
SI + P + ++ Y + E EFDR R ++E LE N T W K+AE E I I
Sbjct: 479 SIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIE 537
Query: 111 HARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI 167
AR +++ A++ P +D LW YI E R ++ R + T + W+S+
Sbjct: 538 RARAIYELAISQ-PRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFA 596
Query: 168 KFEL--RYE-QVELARQVFE 184
+FEL R E + RQ++E
Sbjct: 597 QFELSSRKEGSLAKCRQIYE 616
Score = 116 (45.9 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 38/158 (24%), Positives = 72/158 (45%)
Query: 36 ELYDYRLHKRNDFEDSIRRVPG---DTAVWINYAKWEGSQNEFDRARSMWELALE----- 87
E + Y H R +E ++ D +++ +AK+E +Q EF+R R +++ AL+
Sbjct: 267 EKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQ 326
Query: 88 ---EDCRNHTLW-CKYAEFEMINKFINHARNV-WDRAVAVLPHVDQLWYKYIRMEEIAGN 142
E +N+T++ K+ + I I R ++ V PH W+ Y+R+ E
Sbjct: 327 EAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAE 386
Query: 143 VAAARLIFDRWMHWTP---DQQAWLSYIKFELRYEQVE 177
R +++R + P +++ W YI + Y E
Sbjct: 387 AETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYE 424
Score = 114 (45.2 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + WI +A+ E + +RAR+++ELA+ + + LW Y +F
Sbjct: 506 RKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDF 565
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA---GNVAAARLIFD 151
E+ + RN++ R + HV ++W + + E + G++A R I++
Sbjct: 566 EIEQEETERTRNLYRRLLQRTQHV-KVWISFAQFELSSRKEGSLAKCRQIYE 616
Score = 109 (43.4 bits), Expect = 1.8e-19, Sum P(3) = 1.8e-19
Identities = 37/159 (23%), Positives = 69/159 (43%)
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALE---EDCRNHTLWCKYAEFEMINKFINHARN 114
D WI YA++E F AR ++E A+E ++ + L+ +A+FE K R
Sbjct: 255 DVKNWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRV 314
Query: 115 VWDRAVAVLP--HVDQLWYKYIRMEEIAGN--------VAAARLIFDRWMHWTP-DQQAW 163
++ A+ + +L+ Y E+ G+ V+ R ++ + P + AW
Sbjct: 315 IYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAW 374
Query: 164 LSYIKFELRYEQVELARQVFERLVQCHPNVVSS--WIKY 200
Y++ + E R+V+ER + P + W +Y
Sbjct: 375 FDYLRLVESDAEAETVREVYERAIANVPPIQEKRHWKRY 413
Score = 83 (34.3 bits), Expect = 4.5e-87, Sum P(4) = 4.5e-87
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDG 329
K+YI FE Q T+H+KVWIS+A+FE S+ K+G
Sbjct: 560 KSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSS-RKEG 606
Score = 44 (20.5 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 279 PKDKA---YIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFE 321
P+++A YI+FE +K WI YA+FE
Sbjct: 221 PEEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFE 266
Score = 41 (19.5 bits), Expect = 4.5e-87, Sum P(4) = 4.5e-87
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 260 KEFGDWVLIEDAIVGK 275
K+FGD IED IV K
Sbjct: 340 KKFGDRRGIEDIIVSK 355
Score = 40 (19.1 bits), Expect = 1.4e-82, Sum P(4) = 1.4e-82
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 312 KVWISYAKFE 321
K+W+ YA+FE
Sbjct: 454 KMWLLYAQFE 463
Score = 37 (18.1 bits), Expect = 2.9e-82, Sum P(4) = 2.9e-82
Identities = 4/13 (30%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +W++YA +E
Sbjct: 412 RYIYLWVNYALYE 424
>UNIPROTKB|Q5JY65 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
Uniprot:Q5JY65
Length = 836
Score = 622 (224.0 bits), Expect = 5.7e-87, Sum P(4) = 5.7e-87
Identities = 123/228 (53%), Positives = 156/228 (68%)
Query: 1 MAK-KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSI 52
+AK KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+I
Sbjct: 164 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNI 223
Query: 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112
R+ + WI YA+WE S E RARS++E AL+ D RN TLW KYAE EM N+ +NHA
Sbjct: 224 RKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHA 283
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR 172
RN+WDRA+ LP V+Q WYKY MEE+ GNVA AR +F+RWM W P++QAW SYI FELR
Sbjct: 284 RNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELR 343
Query: 173 YEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
Y++V+ AR ++ER V HP+V +WIKYA+FE + AR VYERA
Sbjct: 344 YKEVDRARTIYERFVLVHPDV-KNWIKYARFEEKHAYFAHARKVYERA 390
Score = 213 (80.0 bits), Expect = 1.7e-31, Sum P(4) = 1.7e-31
Identities = 49/163 (30%), Positives = 86/163 (52%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA+ E + + AR++W+ A+ R + W KY E + + AR V++R +
Sbjct: 266 LWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWM 325
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELAR 180
P +Q W+ YI E V AR I++R++ PD + W+ Y +FE ++ AR
Sbjct: 326 EWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHAR 384
Query: 181 QVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYERA 220
+V+ER V+ + ++ +AKFE + E +R R +Y+ A
Sbjct: 385 KVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA 427
Score = 203 (76.5 bits), Expect = 6.6e-30, Sum P(3) = 6.6e-30
Identities = 60/225 (26%), Positives = 107/225 (47%)
Query: 11 IRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKWE 69
I K Q L ++ F E+K D + D + KR +E+ ++ P + W +Y +
Sbjct: 431 ISKQDAQELFKNYTIF-EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLV 489
Query: 70 GSQNEFDRARSMWELALEE----DCRNHT-----LWCKYAEFEMIN-KFINHARNVWDRA 119
S E + R ++E A+ + H LW YA +E + K R V+ +
Sbjct: 490 ESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQAS 549
Query: 120 VAVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ 175
+ ++PH ++W Y + E N++ AR + P + + YI+ EL+ +
Sbjct: 550 LELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLRE 609
Query: 176 VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ R+++E+ ++ P +SWIK+A+ E G+IDRAR +YE A
Sbjct: 610 FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELA 654
Score = 188 (71.2 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 46/166 (27%), Positives = 82/166 (49%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+WI YA++E Q AR ++ + C + L+ Y E E+ + + R ++++ +
Sbjct: 563 MWILYAQFEIRQKNLSLARRALGTSIGK-CPKNKLFKVYIELELQLREFDRCRKLYEKFL 621
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM---HWTPDQQAWLSYIKFELRYEQVE 177
P W K+ +E I G++ AR I++ + + W SYI FE+ E+ E
Sbjct: 622 EFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETE 681
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEM---RRGEIDRARNVYERA 220
R ++ RL+Q V WI +A+FE+ + G + + R +YE A
Sbjct: 682 RTRNLYRRLLQ-RTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEA 726
Score = 163 (62.4 bits), Expect = 5.7e-87, Sum P(4) = 5.7e-87
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 402 NMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEES-QKTNFKIL 460
+ E FG D V ++P+K+KKRR++ +D+G AG+EEY DY+FPE++ + N K+L
Sbjct: 748 SFEEEFGTASDKERVDKLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPNLKLL 807
Query: 461 EAASKWIKKKIVSND 475
A W K++ D
Sbjct: 808 AMAKLWKKQQQEKED 822
Score = 151 (58.2 bits), Expect = 1.5e-19, Sum P(2) = 1.5e-19
Identities = 43/140 (30%), Positives = 68/140 (48%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
SI + P + + Y + E EFDR R ++E LE N T W K+AE E I I+
Sbjct: 587 SIGKCPKNKLFKV-YIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDID 645
Query: 111 HARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI 167
AR +++ A++ P +D LW YI E R ++ R + T + W+S+
Sbjct: 646 RARAIYELAISQ-PRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFA 704
Query: 168 KFEL---RYEQVELARQVFE 184
+FEL + + RQ++E
Sbjct: 705 QFELSSGKEGSLTKCRQIYE 724
Score = 122 (48.0 bits), Expect = 5.3e-21, Sum P(3) = 5.3e-21
Identities = 39/158 (24%), Positives = 74/158 (46%)
Query: 36 ELYDYRLHKRNDFEDSIRRVPG---DTAVWINYAKWEGSQNEFDRARSMWELALE----E 88
E + Y H R +E ++ D +++ +AK+E +Q EF+R R +++ AL+ +
Sbjct: 375 EKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQ 434
Query: 89 DC----RNHTLW-CKYAEFEMINKFINHARNV-WDRAVAVLPHVDQLWYKYIRMEEIAGN 142
D +N+T++ K+ + I I R ++ V PH W+ Y+R+ E
Sbjct: 435 DAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAE 494
Query: 143 VAAARLIFDRWMHWTP---DQQAWLSYIKFELRYEQVE 177
A R +++R + P +++ W YI + Y E
Sbjct: 495 AEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYE 532
Score = 114 (45.2 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 27/99 (27%), Positives = 50/99 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + WI +A+ E + DRAR+++ELA+ + + LW Y +F
Sbjct: 614 RKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDF 673
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG 141
E+ + RN++ R + HV ++W + + E +G
Sbjct: 674 EIEQEETERTRNLYRRLLQRTQHV-KVWISFAQFELSSG 711
Score = 110 (43.8 bits), Expect = 9.1e-20, Sum P(3) = 9.1e-20
Identities = 38/159 (23%), Positives = 70/159 (44%)
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALE---EDCRNHTLWCKYAEFEMINKFINHARN 114
D WI YA++E F AR ++E A+E ++ + L+ +A+FE K R
Sbjct: 363 DVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRV 422
Query: 115 VWDRAVAVLPHVD--QLWYKYIRMEEIAGN--------VAAARLIFDRWMHWTP-DQQAW 163
++ A+ + D +L+ Y E+ G+ V+ R ++ + P + AW
Sbjct: 423 IYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAW 482
Query: 164 LSYIKFELRYEQVELARQVFERLVQCHPNVVSS--WIKY 200
Y++ + E R+V+ER + P + W +Y
Sbjct: 483 FDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRY 521
Score = 85 (35.0 bits), Expect = 5.7e-87, Sum P(4) = 5.7e-87
Identities = 28/90 (31%), Positives = 40/90 (44%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDGG----NPDLSEA 337
K+YI FE Q T+H+KVWIS+A+FE S+ K+G EA
Sbjct: 668 KSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSS-GKEGSLTKCRQIYEEA 726
Query: 338 DL----CERKKQSIRGARRSHRKIYHQFAT 363
+ CE K++ + S R +F T
Sbjct: 727 NKTMRNCEEKEERLM-LLESWRSFEEEFGT 755
Score = 44 (20.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 279 PKDKA---YIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFE 321
P+++A YI+FE +K WI YA+FE
Sbjct: 329 PEEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFE 374
Score = 42 (19.8 bits), Expect = 1.8e-82, Sum P(4) = 1.8e-82
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 312 KVWISYAKFE 321
K+WI YA+FE
Sbjct: 562 KMWILYAQFE 571
Score = 41 (19.5 bits), Expect = 5.7e-87, Sum P(4) = 5.7e-87
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 260 KEFGDWVLIEDAIVGK 275
K+FGD IED IV K
Sbjct: 448 KKFGDRRGIEDIIVSK 463
Score = 38 (18.4 bits), Expect = 4.6e-82, Sum P(4) = 4.6e-82
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +WI+YA +E
Sbjct: 520 RYIYLWINYALYE 532
>UNIPROTKB|Q9BZJ0 [details] [associations]
symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
"Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
Ensembl:ENST00000377340 Ensembl:ENST00000490910
Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
Length = 848
Score = 622 (224.0 bits), Expect = 5.7e-87, Sum P(4) = 5.7e-87
Identities = 123/228 (53%), Positives = 156/228 (68%)
Query: 1 MAK-KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSI 52
+AK KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+I
Sbjct: 176 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNI 235
Query: 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112
R+ + WI YA+WE S E RARS++E AL+ D RN TLW KYAE EM N+ +NHA
Sbjct: 236 RKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHA 295
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR 172
RN+WDRA+ LP V+Q WYKY MEE+ GNVA AR +F+RWM W P++QAW SYI FELR
Sbjct: 296 RNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELR 355
Query: 173 YEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
Y++V+ AR ++ER V HP+V +WIKYA+FE + AR VYERA
Sbjct: 356 YKEVDRARTIYERFVLVHPDV-KNWIKYARFEEKHAYFAHARKVYERA 402
Score = 213 (80.0 bits), Expect = 1.9e-31, Sum P(4) = 1.9e-31
Identities = 49/163 (30%), Positives = 86/163 (52%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA+ E + + AR++W+ A+ R + W KY E + + AR V++R +
Sbjct: 278 LWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWM 337
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELAR 180
P +Q W+ YI E V AR I++R++ PD + W+ Y +FE ++ AR
Sbjct: 338 EWQPE-EQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFEEKHAYFAHAR 396
Query: 181 QVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYERA 220
+V+ER V+ + ++ +AKFE + E +R R +Y+ A
Sbjct: 397 KVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA 439
Score = 203 (76.5 bits), Expect = 7.0e-30, Sum P(3) = 7.0e-30
Identities = 60/225 (26%), Positives = 107/225 (47%)
Query: 11 IRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKWE 69
I K Q L ++ F E+K D + D + KR +E+ ++ P + W +Y +
Sbjct: 443 ISKQDAQELFKNYTIF-EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLV 501
Query: 70 GSQNEFDRARSMWELALEE----DCRNHT-----LWCKYAEFEMIN-KFINHARNVWDRA 119
S E + R ++E A+ + H LW YA +E + K R V+ +
Sbjct: 502 ESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQAS 561
Query: 120 VAVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ 175
+ ++PH ++W Y + E N++ AR + P + + YI+ EL+ +
Sbjct: 562 LELIPHKKFTFAKMWILYAQFEIRQKNLSLARRALGTSIGKCPKNKLFKVYIELELQLRE 621
Query: 176 VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ R+++E+ ++ P +SWIK+A+ E G+IDRAR +YE A
Sbjct: 622 FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELA 666
Score = 188 (71.2 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 46/166 (27%), Positives = 82/166 (49%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+WI YA++E Q AR ++ + C + L+ Y E E+ + + R ++++ +
Sbjct: 575 MWILYAQFEIRQKNLSLARRALGTSIGK-CPKNKLFKVYIELELQLREFDRCRKLYEKFL 633
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM---HWTPDQQAWLSYIKFELRYEQVE 177
P W K+ +E I G++ AR I++ + + W SYI FE+ E+ E
Sbjct: 634 EFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETE 693
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEM---RRGEIDRARNVYERA 220
R ++ RL+Q V WI +A+FE+ + G + + R +YE A
Sbjct: 694 RTRNLYRRLLQ-RTQHVKVWISFAQFELSSGKEGSLTKCRQIYEEA 738
Score = 163 (62.4 bits), Expect = 5.7e-87, Sum P(4) = 5.7e-87
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 402 NMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEES-QKTNFKIL 460
+ E FG D V ++P+K+KKRR++ +D+G AG+EEY DY+FPE++ + N K+L
Sbjct: 760 SFEEEFGTASDKERVDKLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPNLKLL 819
Query: 461 EAASKWIKKKIVSND 475
A W K++ D
Sbjct: 820 AMAKLWKKQQQEKED 834
Score = 151 (58.2 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 43/140 (30%), Positives = 68/140 (48%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
SI + P + + Y + E EFDR R ++E LE N T W K+AE E I I+
Sbjct: 599 SIGKCPKNKLFKV-YIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDID 657
Query: 111 HARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI 167
AR +++ A++ P +D LW YI E R ++ R + T + W+S+
Sbjct: 658 RARAIYELAISQ-PRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFA 716
Query: 168 KFEL---RYEQVELARQVFE 184
+FEL + + RQ++E
Sbjct: 717 QFELSSGKEGSLTKCRQIYE 736
Score = 122 (48.0 bits), Expect = 5.6e-21, Sum P(3) = 5.6e-21
Identities = 39/158 (24%), Positives = 74/158 (46%)
Query: 36 ELYDYRLHKRNDFEDSIRRVPG---DTAVWINYAKWEGSQNEFDRARSMWELALE----E 88
E + Y H R +E ++ D +++ +AK+E +Q EF+R R +++ AL+ +
Sbjct: 387 EKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQ 446
Query: 89 DC----RNHTLW-CKYAEFEMINKFINHARNV-WDRAVAVLPHVDQLWYKYIRMEEIAGN 142
D +N+T++ K+ + I I R ++ V PH W+ Y+R+ E
Sbjct: 447 DAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAE 506
Query: 143 VAAARLIFDRWMHWTP---DQQAWLSYIKFELRYEQVE 177
A R +++R + P +++ W YI + Y E
Sbjct: 507 AEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYE 544
Score = 114 (45.2 bits), Expect = 1.1e-15, Sum P(2) = 1.1e-15
Identities = 27/99 (27%), Positives = 50/99 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + WI +A+ E + DRAR+++ELA+ + + LW Y +F
Sbjct: 626 RKLYEKFLEFGPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDF 685
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG 141
E+ + RN++ R + HV ++W + + E +G
Sbjct: 686 EIEQEETERTRNLYRRLLQRTQHV-KVWISFAQFELSSG 723
Score = 110 (43.8 bits), Expect = 9.6e-20, Sum P(3) = 9.6e-20
Identities = 38/159 (23%), Positives = 70/159 (44%)
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALE---EDCRNHTLWCKYAEFEMINKFINHARN 114
D WI YA++E F AR ++E A+E ++ + L+ +A+FE K R
Sbjct: 375 DVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRV 434
Query: 115 VWDRAVAVLPHVD--QLWYKYIRMEEIAGN--------VAAARLIFDRWMHWTP-DQQAW 163
++ A+ + D +L+ Y E+ G+ V+ R ++ + P + AW
Sbjct: 435 IYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAW 494
Query: 164 LSYIKFELRYEQVELARQVFERLVQCHPNVVSS--WIKY 200
Y++ + E R+V+ER + P + W +Y
Sbjct: 495 FDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRY 533
Score = 85 (35.0 bits), Expect = 5.7e-87, Sum P(4) = 5.7e-87
Identities = 28/90 (31%), Positives = 40/90 (44%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDGG----NPDLSEA 337
K+YI FE Q T+H+KVWIS+A+FE S+ K+G EA
Sbjct: 680 KSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSS-GKEGSLTKCRQIYEEA 738
Query: 338 DL----CERKKQSIRGARRSHRKIYHQFAT 363
+ CE K++ + S R +F T
Sbjct: 739 NKTMRNCEEKEERLM-LLESWRSFEEEFGT 767
Score = 44 (20.5 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 279 PKDKA---YIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFE 321
P+++A YI+FE +K WI YA+FE
Sbjct: 341 PEEQAWHSYINFELRYKEVDRARTIYERFVLVHPDVKNWIKYARFE 386
Score = 42 (19.8 bits), Expect = 1.8e-82, Sum P(4) = 1.8e-82
Identities = 7/10 (70%), Positives = 9/10 (90%)
Query: 312 KVWISYAKFE 321
K+WI YA+FE
Sbjct: 574 KMWILYAQFE 583
Score = 41 (19.5 bits), Expect = 5.7e-87, Sum P(4) = 5.7e-87
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 260 KEFGDWVLIEDAIVGK 275
K+FGD IED IV K
Sbjct: 460 KKFGDRRGIEDIIVSK 475
Score = 38 (18.4 bits), Expect = 4.6e-82, Sum P(4) = 4.6e-82
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +WI+YA +E
Sbjct: 532 RYIYLWINYALYE 544
>MGI|MGI:1914127 [details] [associations]
symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
GermOnline:ENSMUSG00000001767 Uniprot:P63154
Length = 690
Score = 624 (224.7 bits), Expect = 7.2e-87, Sum P(4) = 7.2e-87
Identities = 124/228 (54%), Positives = 155/228 (67%)
Query: 1 MAK-KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSI 52
+AK KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+I
Sbjct: 15 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNI 74
Query: 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112
R+ + WI YA+WE S E RARS++E AL+ D RN TLW KYAE EM N+ +NHA
Sbjct: 75 RKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHA 134
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR 172
RN+WDRA+ LP V+Q WYKY MEE+ GNVA AR +F+RWM W P++QAW SYI FELR
Sbjct: 135 RNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELR 194
Query: 173 YEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
Y++VE AR ++ER V HP V +WIKYA+FE + AR VYERA
Sbjct: 195 YKEVERARTIYERFVLVHP-AVKNWIKYARFEEKHAYFAHARKVYERA 241
Score = 206 (77.6 bits), Expect = 7.8e-31, Sum P(4) = 7.8e-31
Identities = 48/163 (29%), Positives = 85/163 (52%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA+ E + + AR++W+ A+ R + W KY E + + AR V++R +
Sbjct: 117 LWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWM 176
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELAR 180
P +Q W+ YI E V AR I++R++ P + W+ Y +FE ++ AR
Sbjct: 177 EWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHAR 235
Query: 181 QVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYERA 220
+V+ER V+ + ++ +AKFE + E +R R +Y+ A
Sbjct: 236 KVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA 278
Score = 203 (76.5 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 60/225 (26%), Positives = 106/225 (47%)
Query: 11 IRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKWE 69
I K Q L ++ F E+K D + D + KR +E+ ++ P + W +Y +
Sbjct: 282 ISKQEAQELFKNYTIF-EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLV 340
Query: 70 GSQNEFDRARSMWELALEE----DCRNHT-----LWCKYAEFEMIN-KFINHARNVWDRA 119
S E D R ++E A+ + H LW YA +E + K R V+ +
Sbjct: 341 ESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQAS 400
Query: 120 VAVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ 175
+ ++PH ++W Y + E N+ AR + P + + YI+ EL+ +
Sbjct: 401 LELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLRE 460
Query: 176 VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ R+++E+ ++ P +SWIK+A+ E G+I+RAR +YE A
Sbjct: 461 FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELA 505
Score = 182 (69.1 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
Identities = 44/166 (26%), Positives = 82/166 (49%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA++E Q AR ++ + C + L+ Y E E+ + + R ++++ +
Sbjct: 414 MWLYYAQFEIRQKNLPFARRALGTSIGK-CPKNKLFKGYIELELQLREFDRCRKLYEKFL 472
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM---HWTPDQQAWLSYIKFELRYEQVE 177
P W K+ +E I G++ AR I++ + + W SYI FE+ E+ E
Sbjct: 473 EFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETE 532
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEM---RRGEIDRARNVYERA 220
R ++ +L+Q V WI +A+FE+ + G + + R +YE A
Sbjct: 533 RTRNLYRQLLQ-RTQHVKVWISFAQFELSSGKEGSVAKCRQIYEEA 577
Score = 161 (61.7 bits), Expect = 7.2e-87, Sum P(4) = 7.2e-87
Identities = 29/70 (41%), Positives = 47/70 (67%)
Query: 402 NMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEES-QKTNFKIL 460
+ E FG + D V ++P+K+KKRR++ +D+G AG+EEY DY+FPE++ + N K+L
Sbjct: 599 SFEDEFGTVSDKERVDKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLL 658
Query: 461 EAASKWIKKK 470
A W K++
Sbjct: 659 AMAKLWKKQQ 668
Score = 150 (57.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 43/140 (30%), Positives = 68/140 (48%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
SI + P + ++ Y + E EFDR R ++E LE N T W K+AE E I I
Sbjct: 438 SIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIE 496
Query: 111 HARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI 167
AR +++ A++ P +D LW YI E R ++ + + T + W+S+
Sbjct: 497 RARAIYELAISQ-PRLDMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFA 555
Query: 168 KFEL---RYEQVELARQVFE 184
+FEL + V RQ++E
Sbjct: 556 QFELSSGKEGSVAKCRQIYE 575
Score = 114 (45.2 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 38/158 (24%), Positives = 72/158 (45%)
Query: 36 ELYDYRLHKRNDFEDSIRRVPG---DTAVWINYAKWEGSQNEFDRARSMWELALE----- 87
E + Y H R +E ++ D +++ +AK+E +Q EF+R R +++ AL+
Sbjct: 226 EKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQ 285
Query: 88 ---EDCRNHTLW-CKYAEFEMINKFINHARNV-WDRAVAVLPHVDQLWYKYIRMEEIAGN 142
E +N+T++ K+ + I I R ++ V PH W+ Y+R+ E
Sbjct: 286 EAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAE 345
Query: 143 VAAARLIFDRWMHWTP---DQQAWLSYIKFELRYEQVE 177
R +++R + P +++ W YI + Y E
Sbjct: 346 ADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYE 383
Score = 113 (44.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + WI +A+ E + +RAR+++ELA+ + + LW Y +F
Sbjct: 465 RKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDF 524
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG---NVAAARLIFD 151
E+ + RN++ + + HV ++W + + E +G +VA R I++
Sbjct: 525 EIEQEETERTRNLYRQLLQRTQHV-KVWISFAQFELSSGKEGSVAKCRQIYE 575
Score = 84 (34.6 bits), Expect = 7.2e-87, Sum P(4) = 7.2e-87
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDG 329
K+YI FE Q T+H+KVWIS+A+FE S+ K+G
Sbjct: 519 KSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELSS-GKEG 565
Score = 43 (20.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 279 PKDKA---YIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFE 321
P+++A YI+FE +K WI YA+FE
Sbjct: 180 PEEQAWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFE 225
Score = 41 (19.5 bits), Expect = 7.2e-87, Sum P(4) = 7.2e-87
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 260 KEFGDWVLIEDAIVGK 275
K+FGD IED IV K
Sbjct: 299 KKFGDRRGIEDIIVSK 314
Score = 40 (19.1 bits), Expect = 2.9e-82, Sum P(4) = 2.9e-82
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 312 KVWISYAKFE 321
K+W+ YA+FE
Sbjct: 413 KMWLYYAQFE 422
Score = 37 (18.1 bits), Expect = 5.9e-82, Sum P(4) = 5.9e-82
Identities = 4/13 (30%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +W++YA +E
Sbjct: 371 RYIYLWVNYALYE 383
>RGD|620507 [details] [associations]
symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
(Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
"spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
InParanoid:P63155 NextBio:619051 Genevestigator:P63155
GermOnline:ENSRNOG00000040045 Uniprot:P63155
Length = 690
Score = 624 (224.7 bits), Expect = 7.2e-87, Sum P(4) = 7.2e-87
Identities = 124/228 (54%), Positives = 155/228 (67%)
Query: 1 MAK-KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSI 52
+AK KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+I
Sbjct: 15 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNI 74
Query: 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112
R+ + WI YA+WE S E RARS++E AL+ D RN TLW KYAE EM N+ +NHA
Sbjct: 75 RKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHA 134
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR 172
RN+WDRA+ LP V+Q WYKY MEE+ GNVA AR +F+RWM W P++QAW SYI FELR
Sbjct: 135 RNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELR 194
Query: 173 YEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
Y++VE AR ++ER V HP V +WIKYA+FE + AR VYERA
Sbjct: 195 YKEVERARTIYERFVLVHP-AVKNWIKYARFEEKHAYFAHARKVYERA 241
Score = 206 (77.6 bits), Expect = 7.8e-31, Sum P(4) = 7.8e-31
Identities = 48/163 (29%), Positives = 85/163 (52%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA+ E + + AR++W+ A+ R + W KY E + + AR V++R +
Sbjct: 117 LWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWM 176
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELAR 180
P +Q W+ YI E V AR I++R++ P + W+ Y +FE ++ AR
Sbjct: 177 EWQPE-EQAWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHAR 235
Query: 181 QVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYERA 220
+V+ER V+ + ++ +AKFE + E +R R +Y+ A
Sbjct: 236 KVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYA 278
Score = 203 (76.5 bits), Expect = 5.6e-30, Sum P(3) = 5.6e-30
Identities = 60/225 (26%), Positives = 106/225 (47%)
Query: 11 IRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKWE 69
I K Q L ++ F E+K D + D + KR +E+ ++ P + W +Y +
Sbjct: 282 ISKQEAQELFKNYTIF-EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLV 340
Query: 70 GSQNEFDRARSMWELALEE----DCRNHT-----LWCKYAEFEMIN-KFINHARNVWDRA 119
S E D R ++E A+ + H LW YA +E + K R V+ +
Sbjct: 341 ESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQAS 400
Query: 120 VAVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ 175
+ ++PH ++W Y + E N+ AR + P + + YI+ EL+ +
Sbjct: 401 LELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLRE 460
Query: 176 VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ R+++E+ ++ P +SWIK+A+ E G+I+RAR +YE A
Sbjct: 461 FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELA 505
Score = 182 (69.1 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
Identities = 44/166 (26%), Positives = 82/166 (49%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA++E Q AR ++ + C + L+ Y E E+ + + R ++++ +
Sbjct: 414 MWLYYAQFEIRQKNLPFARRALGTSIGK-CPKNKLFKGYIELELQLREFDRCRKLYEKFL 472
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM---HWTPDQQAWLSYIKFELRYEQVE 177
P W K+ +E I G++ AR I++ + + W SYI FE+ E+ E
Sbjct: 473 EFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETE 532
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEM---RRGEIDRARNVYERA 220
R ++ +L+Q V WI +A+FE+ + G + + R +YE A
Sbjct: 533 RTRNLYRQLLQ-RTQHVKVWISFAQFELSSGKEGSVAKCRQIYEEA 577
Score = 161 (61.7 bits), Expect = 7.2e-87, Sum P(4) = 7.2e-87
Identities = 29/70 (41%), Positives = 47/70 (67%)
Query: 402 NMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEES-QKTNFKIL 460
+ E FG + D V ++P+K+KKRR++ +D+G AG+EEY DY+FPE++ + N K+L
Sbjct: 599 SFEDEFGTVSDKERVDKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLL 658
Query: 461 EAASKWIKKK 470
A W K++
Sbjct: 659 AMAKLWKKQQ 668
Score = 150 (57.9 bits), Expect = 1.9e-19, Sum P(2) = 1.9e-19
Identities = 43/140 (30%), Positives = 68/140 (48%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
SI + P + ++ Y + E EFDR R ++E LE N T W K+AE E I I
Sbjct: 438 SIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIE 496
Query: 111 HARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI 167
AR +++ A++ P +D LW YI E R ++ + + T + W+S+
Sbjct: 497 RARAIYELAISQ-PRLDMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFA 555
Query: 168 KFEL---RYEQVELARQVFE 184
+FEL + V RQ++E
Sbjct: 556 QFELSSGKEGSVAKCRQIYE 575
Score = 114 (45.2 bits), Expect = 3.4e-20, Sum P(3) = 3.4e-20
Identities = 38/158 (24%), Positives = 72/158 (45%)
Query: 36 ELYDYRLHKRNDFEDSIRRVPG---DTAVWINYAKWEGSQNEFDRARSMWELALE----- 87
E + Y H R +E ++ D +++ +AK+E +Q EF+R R +++ AL+
Sbjct: 226 EKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQ 285
Query: 88 ---EDCRNHTLW-CKYAEFEMINKFINHARNV-WDRAVAVLPHVDQLWYKYIRMEEIAGN 142
E +N+T++ K+ + I I R ++ V PH W+ Y+R+ E
Sbjct: 286 EAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAE 345
Query: 143 VAAARLIFDRWMHWTP---DQQAWLSYIKFELRYEQVE 177
R +++R + P +++ W YI + Y E
Sbjct: 346 ADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYE 383
Score = 113 (44.8 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + WI +A+ E + +RAR+++ELA+ + + LW Y +F
Sbjct: 465 RKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDF 524
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG---NVAAARLIFD 151
E+ + RN++ + + HV ++W + + E +G +VA R I++
Sbjct: 525 EIEQEETERTRNLYRQLLQRTQHV-KVWISFAQFELSSGKEGSVAKCRQIYE 575
Score = 84 (34.6 bits), Expect = 7.2e-87, Sum P(4) = 7.2e-87
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDG 329
K+YI FE Q T+H+KVWIS+A+FE S+ K+G
Sbjct: 519 KSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELSS-GKEG 565
Score = 43 (20.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 279 PKDKA---YIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFE 321
P+++A YI+FE +K WI YA+FE
Sbjct: 180 PEEQAWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYARFE 225
Score = 41 (19.5 bits), Expect = 7.2e-87, Sum P(4) = 7.2e-87
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 260 KEFGDWVLIEDAIVGK 275
K+FGD IED IV K
Sbjct: 299 KKFGDRRGIEDIIVSK 314
Score = 40 (19.1 bits), Expect = 2.9e-82, Sum P(4) = 2.9e-82
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 312 KVWISYAKFE 321
K+W+ YA+FE
Sbjct: 413 KMWLYYAQFE 422
Score = 37 (18.1 bits), Expect = 5.9e-82, Sum P(4) = 5.9e-82
Identities = 4/13 (30%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +W++YA +E
Sbjct: 371 RYIYLWVNYALYE 383
>UNIPROTKB|F1MZT2 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
complex assembly" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
Uniprot:F1MZT2
Length = 781
Score = 616 (221.9 bits), Expect = 2.4e-86, Sum P(4) = 2.4e-86
Identities = 124/232 (53%), Positives = 158/232 (68%)
Query: 1 MAK-KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSI 52
+AK KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+I
Sbjct: 99 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNI 158
Query: 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112
R+ + WI YA+WE S E RARS++E AL+ D RN TLW KYAE EM N+ +NHA
Sbjct: 159 RKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHA 218
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR 172
RN+WDRA+ LP V+Q WYKY MEE+ GN+A AR +F+RWM W P++QAW SYI FELR
Sbjct: 219 RNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWRPEEQAWHSYINFELR 278
Query: 173 YEQVELARQVFER----LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
Y++V+ AR ++ER LV HP+V +WIKYA+FE + G AR VYERA
Sbjct: 279 YKEVDRARTIYERYIHSLVLVHPDV-KNWIKYARFEEKHGYFAHARKVYERA 329
Score = 199 (75.1 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 59/225 (26%), Positives = 106/225 (47%)
Query: 11 IRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKWE 69
I K Q L ++ F E+K D + D + KR +E+ ++ P + W +Y +
Sbjct: 370 ISKQEAQELFKNYTIF-EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLV 428
Query: 70 GSQNEFDRARSMWELALEE----DCRNHT-----LWCKYAEFEMIN-KFINHARNVWDRA 119
S E + R ++E A+ + H LW YA +E + K R V+ +
Sbjct: 429 ESDAEAETVREVYERAIANVPPVQEKRHWKRYIYLWINYALYEELEAKDPERTRQVYQAS 488
Query: 120 VAVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ 175
+ ++PH ++W Y + E N+ AR + P + + YI+ EL+ +
Sbjct: 489 LELIPHKKFTFAKMWLLYAQFEIRQKNLPFARRALGTSIGKCPKNKLFKGYIELELQLRE 548
Query: 176 VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ R+++E+ ++ P +SWIK+A+ E G+I+RAR +YE A
Sbjct: 549 FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELA 593
Score = 184 (69.8 bits), Expect = 2.4e-23, Sum P(2) = 2.4e-23
Identities = 45/166 (27%), Positives = 82/166 (49%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA++E Q AR ++ + C + L+ Y E E+ + + R ++++ +
Sbjct: 502 MWLLYAQFEIRQKNLPFARRALGTSIGK-CPKNKLFKGYIELELQLREFDRCRKLYEKFL 560
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM---HWTPDQQAWLSYIKFELRYEQVE 177
P W K+ +E I G++ AR I++ + + W SYI FE+ E+ E
Sbjct: 561 EFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETE 620
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEM---RRGEIDRARNVYERA 220
R ++ RL+Q V WI +A+FE+ + G + + R +YE A
Sbjct: 621 RTRNLYRRLLQ-RTQHVKVWISFAQFELSSGKEGSLAKCRQIYEEA 665
Score = 165 (63.1 bits), Expect = 1.4e-25, Sum P(3) = 1.4e-25
Identities = 57/196 (29%), Positives = 93/196 (47%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWE-----LAL-EEDCRNHTLWCK 98
R FE + P + A W +Y +E E DRAR+++E L L D +N W K
Sbjct: 253 RQVFERWMEWRPEEQA-WHSYINFELRYKEVDRARTIYERYIHSLVLVHPDVKN---WIK 308
Query: 99 YAEFEMINKFINHARNVWDRAVAVL--PHVDQ-LWYKYIRMEEIAGNVAAARLIFDRWMH 155
YA FE + + HAR V++RAV H+D+ L+ + + EE R+I+ +
Sbjct: 309 YARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALD 368
Query: 156 WTPDQQA---WLSYIKFELRY------EQVELARQVF--ERLVQCHPNVVSSWIKYAKFE 204
Q+A + +Y FE ++ E + ++++ F E V+ +P+ +W Y +
Sbjct: 369 RISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLV 428
Query: 205 MRRGEIDRARNVYERA 220
E + R VYERA
Sbjct: 429 ESDAEAETVREVYERA 444
Score = 164 (62.8 bits), Expect = 2.4e-86, Sum P(4) = 2.4e-86
Identities = 30/70 (42%), Positives = 46/70 (65%)
Query: 402 NMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEES-QKTNFKIL 460
N E FG D V ++P+K+KKRR++ +D+G AG+EEY DY+FPE++ + N K+L
Sbjct: 687 NFEDEFGTASDKERVDKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLL 746
Query: 461 EAASKWIKKK 470
A W K++
Sbjct: 747 AMAKLWKKQQ 756
Score = 153 (58.9 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 45/140 (32%), Positives = 70/140 (50%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
SI + P + ++ Y + E EFDR R ++E LE N T W K+AE E I I
Sbjct: 526 SIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIE 584
Query: 111 HARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI 167
AR +++ A++ P +D LW YI E R ++ R + T + W+S+
Sbjct: 585 RARAIYELAISQ-PRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFA 643
Query: 168 KFELRY-EQVELA--RQVFE 184
+FEL ++ LA RQ++E
Sbjct: 644 QFELSSGKEGSLAKCRQIYE 663
Score = 114 (45.2 bits), Expect = 6.9e-16, Sum P(2) = 6.9e-16
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + WI +A+ E + +RAR+++ELA+ + + LW Y +F
Sbjct: 553 RKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDF 612
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG---NVAAARLIFD 151
E+ + RN++ R + HV ++W + + E +G ++A R I++
Sbjct: 613 EIEQEETERTRNLYRRLLQRTQHV-KVWISFAQFELSSGKEGSLAKCRQIYE 663
Score = 84 (34.6 bits), Expect = 2.4e-86, Sum P(4) = 2.4e-86
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDG 329
K+YI FE Q T+H+KVWIS+A+FE S+ K+G
Sbjct: 607 KSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSS-GKEG 653
Score = 42 (19.8 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 311 LKVWISYAKFE 321
+K WI YA+FE
Sbjct: 303 VKNWIKYARFE 313
Score = 41 (19.5 bits), Expect = 2.4e-86, Sum P(4) = 2.4e-86
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 260 KEFGDWVLIEDAIVGK 275
K+FGD IED IV K
Sbjct: 387 KKFGDRRGIEDIIVSK 402
Score = 40 (19.1 bits), Expect = 9.6e-82, Sum P(4) = 9.6e-82
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 312 KVWISYAKFE 321
K+W+ YA+FE
Sbjct: 501 KMWLLYAQFE 510
Score = 38 (18.4 bits), Expect = 1.5e-81, Sum P(4) = 1.5e-81
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +WI+YA +E
Sbjct: 459 RYIYLWINYALYE 471
>FB|FBgn0000377 [details] [associations]
symbol:crn "crooked neck" species:7227 "Drosophila
melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
evidence=IMP] [GO:0007417 "central nervous system development"
evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
"peripheral nervous system development" evidence=NAS] [GO:0048663
"neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
[GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
MINT:MINT-282072 STRING:P17886 PaxDb:P17886
EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
Uniprot:P17886
Length = 702
Score = 618 (222.6 bits), Expect = 3.9e-86, Sum P(4) = 3.9e-86
Identities = 118/228 (51%), Positives = 158/228 (69%)
Query: 1 MAK-KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSI 52
+AK KN A ++ TAEQ+LRE++E E QK DP EL DY+ KR FED++
Sbjct: 10 VAKVKNKAPAEVQITAEQLLREAKERDLEILPPPPKQKISDPAELADYQQRKRKTFEDNL 69
Query: 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112
R+ + WI YA+WE Q E RARS+WE AL+ + RN TLW KYAE EM NK +NHA
Sbjct: 70 RKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHA 129
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR 172
RN+WDRAV ++P V+Q WYKY MEE+ NVA AR +F+RWM W P++QAW +Y+ FELR
Sbjct: 130 RNLWDRAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELR 189
Query: 173 YEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
Y++++ AR+++ER V HP+V +WIK+A+FE G I +R V+ERA
Sbjct: 190 YKEIDRAREIYERFVYVHPDV-KNWIKFARFEESHGFIHGSRRVFERA 236
Score = 216 (81.1 bits), Expect = 6.2e-32, Sum P(4) = 6.2e-32
Identities = 57/213 (26%), Positives = 108/213 (50%)
Query: 12 RKTAEQILRESQEHFGEQKSVDPTELYDYRLHK-RNDFEDSIRRVPGDTAVWINYAKWEG 70
RKT E LR+++ E + + R+ +E ++ + +W+ YA+ E
Sbjct: 62 RKTFEDNLRKNRMVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEM 121
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLW 130
+ + AR++W+ A+ R + W KY E + + + AR V++R + P +Q W
Sbjct: 122 KNKQVNHARNLWDRAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPE-EQAW 180
Query: 131 YKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCH 190
Y+ E + AR I++R+++ PD + W+ + +FE + + +R+VFER V+
Sbjct: 181 QTYVNFELRYKEIDRAREIYERFVYVHPDVKNWIKFARFEESHGFIHGSRRVFERAVEFF 240
Query: 191 -PNVVSS--WIKYAKFEMRRGEIDRARNVYERA 220
+ + +I +A+FE + E DRAR +Y+ A
Sbjct: 241 GDDYIEERLFIAFARFEEGQKEHDRARIIYKYA 273
Score = 181 (68.8 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 51/173 (29%), Positives = 84/173 (48%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA++E E RAR LA+ C L+ Y + E+ + R ++++ +
Sbjct: 409 LWLLYAQFEIRCKELQRARKALGLAIGM-CPRDKLFRGYIDLEIQLREFERCRMLYEKFL 467
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFD---RWMHWTPDQQAWLSYIKFELRYEQVE 177
P W K+ +E + G+ AR IF+ + + W +YI FE+ + E
Sbjct: 468 EFGPENCVTWMKFAELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYIDFEVALGETE 527
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEM--RRGE--------IDRARNVYERA 220
LARQ++ERL++ V W+ +AKFEM G+ + AR +YERA
Sbjct: 528 LARQLYERLLE-RTQHVKVWMSFAKFEMGLSHGDSGPDAELNVQLARRIYERA 579
Score = 174 (66.3 bits), Expect = 5.4e-26, Sum P(3) = 5.4e-26
Identities = 50/220 (22%), Positives = 101/220 (45%)
Query: 16 EQILRESQEHFGEQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKWEGSQNE 74
+++ + +H E+K D + D + KR +E + P + W +Y + ++ +
Sbjct: 283 QELFKAYTKH--EKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGD 340
Query: 75 FDRARSMWELAL-------EEDC-RNHT-LWCKYAEFEMIN-KFINHARNVWDRAVAVLP 124
D+ R +E A+ E++ R + LW YA +E + + R ++ + ++P
Sbjct: 341 RDQIRETYERAISNVPPANEKNFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELIP 400
Query: 125 H----VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELAR 180
H +LW Y + E + AR + P + + YI E++ + E R
Sbjct: 401 HKQFTFSKLWLLYAQFEIRCKELQRARKALGLAIGMCPRDKLFRGYIDLEIQLREFERCR 460
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++E+ ++ P +W+K+A+ E G+ DRAR ++E A
Sbjct: 461 MLYEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELA 500
Score = 153 (58.9 bits), Expect = 2.6e-18, Sum P(2) = 2.6e-18
Identities = 45/148 (30%), Positives = 70/148 (47%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
+I P D ++ Y E EF+R R ++E LE N W K+AE E + +
Sbjct: 433 AIGMCPRDK-LFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTD 491
Query: 111 HARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI 167
AR +++ AV P +D LW YI E G AR +++R + T + W+S+
Sbjct: 492 RARAIFELAVQQ-PRLDMPELLWKAYIDFEVALGETELARQLYERLLERTQHVKVWMSFA 550
Query: 168 KFELRYEQ----------VELARQVFER 185
KFE+ V+LAR+++ER
Sbjct: 551 KFEMGLSHGDSGPDAELNVQLARRIYER 578
Score = 148 (57.2 bits), Expect = 3.9e-86, Sum P(4) = 3.9e-86
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 402 NMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPE-ESQKTNFKIL 460
+ ER + ++ V +P+++KKR++I SDNG+ G+EE DY+FPE E + N K+L
Sbjct: 601 DFERDASDSQEMQKVMDKMPRRIKKRQKIVSDNGVEEGWEEVFDYIFPEDEMARPNLKLL 660
Query: 461 EAASKWIKKK 470
AA W +K
Sbjct: 661 AAAKMWKTQK 670
Score = 104 (41.7 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 24/92 (26%), Positives = 48/92 (52%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEFEMI 105
+E + P + W+ +A+ E + DRAR+++ELA+++ + LW Y +FE+
Sbjct: 463 YEKFLEFGPENCVTWMKFAELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYIDFEVA 522
Query: 106 NKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137
AR +++R + HV ++W + + E
Sbjct: 523 LGETELARQLYERLLERTQHV-KVWMSFAKFE 553
Score = 99 (39.9 bits), Expect = 5.9e-18, Sum P(3) = 5.9e-18
Identities = 49/214 (22%), Positives = 95/214 (44%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWI 63
+N GA R+ E+ + E Q V+ EL + + + + V D WI
Sbjct: 158 ENVAGA--RQVFERWMEWQPEEQAWQTYVN-FELRYKEIDRAREIYERFVYVHPDVKNWI 214
Query: 64 NYAKWEGSQNEFDRARSMWELALE---EDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+A++E S +R ++E A+E +D L+ +A FE K + AR ++ A+
Sbjct: 215 KFARFEESHGFIHGSRRVFERAVEFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYAL 274
Query: 121 AVLP--HVDQLWYKYIRMEEIAGN--------VAAARLIFDRWMHWTP-DQQAWLSYIKF 169
LP +L+ Y + E+ G+ V+ + +++ + P + AW Y++
Sbjct: 275 DHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRL 334
Query: 170 -ELRYEQVELARQVFERLVQCHP--NVVSSWIKY 200
E ++ ++ R+ +ER + P N + W +Y
Sbjct: 335 IEAEGDRDQI-RETYERAISNVPPANEKNFWRRY 367
Score = 95 (38.5 bits), Expect = 1.5e-17, Sum P(3) = 1.5e-17
Identities = 38/144 (26%), Positives = 66/144 (45%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHT--LWCKYAEFEM-------INKFINH 111
++I +A++E Q E DRAR +++ AL+ ++ T L+ Y + E I I
Sbjct: 249 LFIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVS 308
Query: 112 ARNV-WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP---DQQAWLSYI 167
R +++ VA P W+ Y+R+ E G+ R ++R + P ++ W YI
Sbjct: 309 KRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRRYI 368
Query: 168 KFELRYEQVE-LARQVFERLVQCH 190
+ Y E L + ER Q +
Sbjct: 369 YLWINYALYEELEAEDAERTRQIY 392
Score = 92 (37.4 bits), Expect = 3.9e-86, Sum P(4) = 3.9e-86
Identities = 21/52 (40%), Positives = 26/52 (50%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDGGNPD 333
KAYI FE + G T+H+KVW+S+AKFE D G PD
Sbjct: 514 KAYIDFEVALGETELARQLYERLLERTQHVKVWMSFAKFEMGLSHGDSG-PD 564
Score = 45 (20.9 bits), Expect = 3.9e-86, Sum P(4) = 3.9e-86
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 260 KEFGDWVLIEDAIVGKGK 277
K++GD IED IV K K
Sbjct: 294 KKYGDRAGIEDVIVSKRK 311
Score = 43 (20.2 bits), Expect = 5.2e-81, Sum P(4) = 5.2e-81
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 312 KVWISYAKFEASALSKDGGNPDLSEA-DLCERKK 344
K+W+ YA+FE L A +C R K
Sbjct: 408 KLWLLYAQFEIRCKELQRARKALGLAIGMCPRDK 441
Score = 41 (19.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 311 LKVWISYAKFEAS 323
+K WI +A+FE S
Sbjct: 210 VKNWIKFARFEES 222
Score = 38 (18.4 bits), Expect = 1.7e-80, Sum P(4) = 1.7e-80
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +WI+YA +E
Sbjct: 366 RYIYLWINYALYE 378
>ZFIN|ZDB-GENE-040426-694 [details] [associations]
symbol:crnkl1 "crooked neck pre-mRNA splicing
factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
"intracellular" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
Uniprot:E7FGM7
Length = 754
Score = 611 (220.1 bits), Expect = 5.5e-85, Sum P(4) = 5.5e-85
Identities = 120/229 (52%), Positives = 157/229 (68%)
Query: 1 MAK-KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSI 52
+AK KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+I
Sbjct: 14 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPKQKITDKEELNDYKLKKRKGFEDNI 73
Query: 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112
R+ + WI YA+WE S E R+RS++E AL+ D RN TLW KYAE EM N+ +NHA
Sbjct: 74 RKNRTVISNWIKYAQWEESLQEVQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQVNHA 133
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR 172
RN+WDRA+ +LP V+Q WYKY MEE+ GN+A R +F+RWM W P++QAW SYI FELR
Sbjct: 134 RNIWDRAITILPRVNQFWYKYTYMEEMLGNIAGCRQVFERWMEWEPEEQAWHSYINFELR 193
Query: 173 YEQVELARQVFER-LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
Y++V+ AR ++E+ LV HP V +WIKYA FE + G + R R V+ERA
Sbjct: 194 YKEVDKARSIYEKALVMVHPEV-KNWIKYAHFEEKHGYVARGRKVFERA 241
Score = 196 (74.1 bits), Expect = 7.7e-29, Sum P(4) = 7.7e-29
Identities = 49/164 (29%), Positives = 85/164 (51%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA+ E + + AR++W+ A+ R + W KY E + I R V++R +
Sbjct: 116 LWLKYAEMEMKNRQVNHARNIWDRAITILPRVNQFWYKYTYMEEMLGNIAGCRQVFERWM 175
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT-PDQQAWLSYIKFELRYEQVELA 179
P +Q W+ YI E V AR I+++ + P+ + W+ Y FE ++ V
Sbjct: 176 EWEPE-EQAWHSYINFELRYKEVDKARSIYEKALVMVHPEVKNWIKYAHFEEKHGYVARG 234
Query: 180 RQVFERLVQCH-PNVVSS--WIKYAKFEMRRGEIDRARNVYERA 220
R+VFER V+ VS ++ +A+FE ++ E +R R +Y+ A
Sbjct: 235 RKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYA 278
Score = 181 (68.8 bits), Expect = 1.1e-26, Sum P(3) = 1.1e-26
Identities = 50/213 (23%), Positives = 102/213 (47%)
Query: 23 QEHFGEQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSM 81
++ FG+++ ++ D + KR +E+ ++ P + W +Y + S + D R +
Sbjct: 298 EKRFGDRRGIE-----DVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADADTVREV 352
Query: 82 WELAL--------EEDCRNHT-LWCKYAEFEMIN-KFINHARNVWDRAVAVLPHVD---- 127
+E A+ + R + LW YA +E + K R V+ + ++PH
Sbjct: 353 YERAIANIPPIQEKRHWRRYIYLWINYALYEELEVKDPERTRQVYKACLELIPHKKFTFA 412
Query: 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLV 187
++W Y + E N+ AR + P + + YI+ EL+ + + R+++E+ +
Sbjct: 413 KIWLLYGQFEIRQKNLQNARRGLGTAIGKCPKNKLFKGYIELELQLREFDRCRKLYEKYL 472
Query: 188 QCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ P ++WIK+A+ E G+ DR+R ++E A
Sbjct: 473 EFSPENCTTWIKFAELETILGDTDRSRAIFELA 505
Score = 181 (68.8 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 46/166 (27%), Positives = 79/166 (47%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ Y ++E Q AR A+ + C + L+ Y E E+ + + R ++++ +
Sbjct: 414 IWLLYGQFEIRQKNLQNARRGLGTAIGK-CPKNKLFKGYIELELQLREFDRCRKLYEKYL 472
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM---HWTPDQQAWLSYIKFELRYEQVE 177
P W K+ +E I G+ +R IF+ + + W SYI FE+ E+ +
Sbjct: 473 EFSPENCTTWIKFAELETILGDTDRSRAIFELAIGQPRLDMPEVLWKSYIDFEIEQEEYD 532
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMR---RGEIDRARNVYERA 220
R +++RL+Q V WI YA+FE+ + R R VYE A
Sbjct: 533 NTRGLYKRLLQ-RTQHVKVWISYAQFELSIDTEDRVQRCRQVYEEA 577
Score = 161 (61.7 bits), Expect = 1.2e-24, Sum P(4) = 1.2e-24
Identities = 45/174 (25%), Positives = 82/174 (47%)
Query: 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEF 102
H RN ++ +I +P W Y E R ++E +E + W Y F
Sbjct: 132 HARNIWDRAITILPRVNQFWYKYTYMEEMLGNIAGCRQVFERWMEWEPEEQA-WHSYINF 190
Query: 103 EMINKFINHARNVWDRA-VAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ 161
E+ K ++ AR+++++A V V P V W KY EE G VA R +F+R + + ++Q
Sbjct: 191 ELRYKEVDKARSIYEKALVMVHPEVKN-WIKYAHFEEKHGYVARGRKVFERAVEFFGEEQ 249
Query: 162 A----WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI--KYAKFEMRRGE 209
++++ +FE + ++ E R +++ + P + + Y FE R G+
Sbjct: 250 VSENLYVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKNYTVFEKRFGD 303
Score = 155 (59.6 bits), Expect = 5.5e-85, Sum P(4) = 5.5e-85
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 404 ERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEES-QKTNFKILEA 462
E FG V+ +LP+K+KKRR+I +++G AG+EEY DY+FPE++ + N K+L
Sbjct: 601 EEEFGSFTHKERVRKLLPEKVKKRRKITAEDGSDAGWEEYYDYIFPEDAANQPNLKLLAM 660
Query: 463 ASKWIKKK 470
A W K++
Sbjct: 661 AKMWKKQQ 668
Score = 108 (43.1 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 25/95 (26%), Positives = 49/95 (51%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + WI +A+ E + DR+R+++ELA+ + + LW Y +F
Sbjct: 465 RKLYEKYLEFSPENCTTWIKFAELETILGDTDRSRAIFELAIGQPRLDMPEVLWKSYIDF 524
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137
E+ + ++ R ++ R + HV ++W Y + E
Sbjct: 525 EIEQEEYDNTRGLYKRLLQRTQHV-KVWISYAQFE 558
Score = 85 (35.0 bits), Expect = 5.5e-85, Sum P(4) = 5.5e-85
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKD 328
K+YI FE Q T+H+KVWISYA+FE S ++D
Sbjct: 519 KSYIDFEIEQEEYDNTRGLYKRLLQRTQHVKVWISYAQFELSIDTED 565
Score = 41 (19.5 bits), Expect = 5.5e-85, Sum P(4) = 5.5e-85
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 260 KEFGDWVLIEDAIVGK 275
K FGD IED IV K
Sbjct: 299 KRFGDRRGIEDVIVSK 314
Score = 39 (18.8 bits), Expect = 3.5e-80, Sum P(4) = 3.5e-80
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 312 KVWISYAKFEASALSKDGGNPDLSEA-DLCERKK 344
K+W+ Y +FE + L A C + K
Sbjct: 413 KIWLLYGQFEIRQKNLQNARRGLGTAIGKCPKNK 446
Score = 39 (18.8 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 311 LKVWISYAKFE 321
+K WI YA FE
Sbjct: 215 VKNWIKYAHFE 225
Score = 38 (18.4 bits), Expect = 4.5e-80, Sum P(4) = 4.5e-80
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +WI+YA +E
Sbjct: 371 RYIYLWINYALYE 383
>UNIPROTKB|F1PYE9 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
Length = 797
Score = 603 (217.3 bits), Expect = 1.4e-84, Sum P(4) = 1.4e-84
Identities = 122/233 (52%), Positives = 156/233 (66%)
Query: 1 MAK-KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSI 52
+AK KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+I
Sbjct: 120 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNI 179
Query: 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112
R+ + WI YA+WE S E RARS++E AL+ D RN TLW KYAE EM N+ +NHA
Sbjct: 180 RKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHA 239
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR 172
RN+WDRA+ LP V+Q WYKY MEE+ GN+A AR +F+RWM W P++QAW SYI FELR
Sbjct: 240 RNIWDRAITTLPRVNQFWYKYTYMEEMLGNIAGARQVFERWMEWQPEEQAWHSYINFELR 299
Query: 173 YEQVELARQVF-----ERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
Y++V+ AR ++ LV HP+V +WIKYA+FE + G AR VYERA
Sbjct: 300 YKEVDRARTIYYFLNSPELVLVHPDV-KNWIKYARFEEKHGYFAHARKVYERA 351
Score = 193 (73.0 bits), Expect = 2.2e-28, Sum P(3) = 2.2e-28
Identities = 57/225 (25%), Positives = 106/225 (47%)
Query: 11 IRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKWE 69
I K Q L ++ F E+K D + D + KR +E+ ++ P + W +Y +
Sbjct: 392 ISKQEAQELFKNYTIF-EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLV 450
Query: 70 GSQNEFDRARSMWELALEE----DCRNHT-----LWCKYAEFEMIN-KFINHARNVWDRA 119
S E + R ++E A+ + H LW YA +E + K R V+ +
Sbjct: 451 ESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQAS 510
Query: 120 VAVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ 175
+ ++PH ++W Y + E N+ + + + P + + YI+ EL+ +
Sbjct: 511 LELIPHKKFTFAKMWLLYAQFEIRQKNLPVSVSLLGTSIGKCPKNKLFKGYIELELQLRE 570
Query: 176 VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ R+++E+ ++ P +SWIK+A+ E G+I+RAR +YE A
Sbjct: 571 FDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELA 615
Score = 181 (68.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 44/166 (26%), Positives = 83/166 (50%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA++E Q + S+ ++ + C + L+ Y E E+ + + R ++++ +
Sbjct: 524 MWLLYAQFEIRQKNLPVSVSLLGTSIGK-CPKNKLFKGYIELELQLREFDRCRKLYEKFL 582
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM---HWTPDQQAWLSYIKFELRYEQVE 177
P W K+ +E I G++ AR I++ + + W SYI FE+ E+ E
Sbjct: 583 EFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETE 642
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEM---RRGEIDRARNVYERA 220
R ++ RL+Q V WI +A+FE+ + G + + R +YE A
Sbjct: 643 RTRNLYRRLLQ-RTQHVKVWISFAQFELSSRKEGSLAKCRQIYEEA 687
Score = 164 (62.8 bits), Expect = 5.1e-25, Sum P(3) = 5.1e-25
Identities = 57/197 (28%), Positives = 93/197 (47%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMW------ELAL-EEDCRNHTLWC 97
R FE + P + A W +Y +E E DRAR+++ EL L D +N W
Sbjct: 274 RQVFERWMEWQPEEQA-WHSYINFELRYKEVDRARTIYYFLNSPELVLVHPDVKN---WI 329
Query: 98 KYAEFEMINKFINHARNVWDRAVAVL--PHVDQ-LWYKYIRMEEIAGNVAAARLIFDRWM 154
KYA FE + + HAR V++RAV H+D+ L+ + + EE R+I+ +
Sbjct: 330 KYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYAL 389
Query: 155 HWTPDQQA---WLSYIKFELRY------EQVELARQVF--ERLVQCHPNVVSSWIKYAKF 203
Q+A + +Y FE ++ E + ++++ F E V+ +P+ +W Y +
Sbjct: 390 DRISKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRL 449
Query: 204 EMRRGEIDRARNVYERA 220
E + R VYERA
Sbjct: 450 VESDAEAETVREVYERA 466
Score = 161 (61.7 bits), Expect = 1.4e-84, Sum P(4) = 1.4e-84
Identities = 29/70 (41%), Positives = 47/70 (67%)
Query: 402 NMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEES-QKTNFKIL 460
+ E FG + D V ++P+K+KKRR++ +D+G AG+EEY DY+FPE++ + N K+L
Sbjct: 709 SFEDEFGTVSDKERVDKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPNLKLL 768
Query: 461 EAASKWIKKK 470
A W K++
Sbjct: 769 AMAKLWKKQQ 778
Score = 154 (59.3 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
Identities = 45/140 (32%), Positives = 69/140 (49%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
SI + P + ++ Y + E EFDR R ++E LE N T W K+AE E I I
Sbjct: 548 SIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIE 606
Query: 111 HARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI 167
AR +++ A++ P +D LW YI E R ++ R + T + W+S+
Sbjct: 607 RARAIYELAISQ-PRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFA 665
Query: 168 KFEL--RYE-QVELARQVFE 184
+FEL R E + RQ++E
Sbjct: 666 QFELSSRKEGSLAKCRQIYE 685
Score = 114 (45.2 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 29/112 (25%), Positives = 57/112 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + WI +A+ E + +RAR+++ELA+ + + LW Y +F
Sbjct: 575 RKLYEKFLEFGPENCTSWIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYIDF 634
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA---GNVAAARLIFD 151
E+ + RN++ R + HV ++W + + E + G++A R I++
Sbjct: 635 EIEQEETERTRNLYRRLLQRTQHV-KVWISFAQFELSSRKEGSLAKCRQIYE 685
Score = 83 (34.3 bits), Expect = 1.4e-84, Sum P(4) = 1.4e-84
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDG 329
K+YI FE Q T+H+KVWIS+A+FE S+ K+G
Sbjct: 629 KSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSS-RKEG 675
Score = 42 (19.8 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 311 LKVWISYAKFE 321
+K WI YA+FE
Sbjct: 325 VKNWIKYARFE 335
Score = 41 (19.5 bits), Expect = 1.4e-84, Sum P(4) = 1.4e-84
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 260 KEFGDWVLIEDAIVGK 275
K+FGD IED IV K
Sbjct: 409 KKFGDRRGIEDIIVSK 424
Score = 40 (19.1 bits), Expect = 4.5e-80, Sum P(4) = 4.5e-80
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 312 KVWISYAKFE 321
K+W+ YA+FE
Sbjct: 523 KMWLLYAQFE 532
Score = 37 (18.1 bits), Expect = 9.2e-80, Sum P(4) = 9.2e-80
Identities = 4/13 (30%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +W++YA +E
Sbjct: 481 RYIYLWVNYALYE 493
>UNIPROTKB|F1P3Q8 [details] [associations]
symbol:CRNKL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
Length = 704
Score = 596 (214.9 bits), Expect = 8.6e-83, Sum P(4) = 8.6e-83
Identities = 121/229 (52%), Positives = 155/229 (67%)
Query: 1 MAK-KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSI 52
+AK KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+I
Sbjct: 31 VAKVKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDVEELNDYKLRKRKTFEDNI 90
Query: 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112
R+ + WI YA+WE S E RARS++E AL+ D RN TLW KYAE EM N+ +NHA
Sbjct: 91 RKNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNVTLWLKYAEMEMKNRQVNHA 150
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR 172
RN+WDRA+ LP V+Q WYKY MEE+ GNVA +R +F+RWM W P++QAW SYI FELR
Sbjct: 151 RNIWDRAITTLPRVNQFWYKYTYMEEMLGNVAGSRQVFERWMEWQPEEQAWHSYINFELR 210
Query: 173 YEQVELARQVF-ERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
Y++V+ AR ++ LV HP+V +WIKYA+FE + AR VYERA
Sbjct: 211 YKEVDRARTIYIALLVIVHPDV-KNWIKYARFEEKHCYFAHARKVYERA 258
Score = 200 (75.5 bits), Expect = 1.9e-28, Sum P(3) = 1.9e-28
Identities = 56/208 (26%), Positives = 99/208 (47%)
Query: 28 EQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELAL 86
E+K D + D + KR +E+ ++ P + W +Y + S + + R ++E A+
Sbjct: 315 EKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADAETVREVYERAI 374
Query: 87 ------EEDC---RNHTLWCKYAEFEMIN-KFINHARNVWDRAVAVLPHVD----QLWYK 132
+E R LW YA +E + K R V+ + +LPH ++W
Sbjct: 375 ANVPPIQEKRYWKRYIYLWINYALYEELEAKDPERTRQVYQACIELLPHKKFTFAKIWLL 434
Query: 133 YIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPN 192
Y + E N+ AR + P + + YI+ EL+ + + R+++E+ ++ P
Sbjct: 435 YAQFEIRQKNLPLARRALGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFAPE 494
Query: 193 VVSSWIKYAKFEMRRGEIDRARNVYERA 220
+SWIK+A+ E G+IDRAR +YE A
Sbjct: 495 NCTSWIKFAELETILGDIDRARAIYELA 522
Score = 187 (70.9 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 45/166 (27%), Positives = 82/166 (49%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA++E Q AR ++ + C + L+ Y E E+ + + R ++++ +
Sbjct: 431 IWLLYAQFEIRQKNLPLARRALGTSIGK-CPKNKLFKGYIELELQLREFDRCRKLYEKFL 489
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM---HWTPDQQAWLSYIKFELRYEQVE 177
P W K+ +E I G++ AR I++ + + W SYI FE+ E+ E
Sbjct: 490 EFAPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEEYE 549
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGE---IDRARNVYERA 220
R ++ RL+Q V WI +A+FE+ G+ + + R +YE A
Sbjct: 550 KTRNLYRRLLQ-RTQHVKVWISFAQFELSAGKEESLSKCRQIYEEA 594
Score = 167 (63.8 bits), Expect = 1.5e-24, Sum P(3) = 1.5e-24
Identities = 55/193 (28%), Positives = 91/193 (47%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELAL---EEDCRNHTLWCKYAE 101
R FE + P + A W +Y +E E DRAR+++ L D +N W KYA
Sbjct: 185 RQVFERWMEWQPEEQA-WHSYINFELRYKEVDRARTIYIALLVIVHPDVKN---WIKYAR 240
Query: 102 FEMINKFINHARNVWDRAVAVL--PHVDQ-LWYKYIRMEEIAGNVAAARLIFDRWMHWTP 158
FE + + HAR V++RAV H+D+ L+ + + EE R+I+ + P
Sbjct: 241 FEEKHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIP 300
Query: 159 DQQA---WLSYIKFELRY------EQVELARQVF--ERLVQCHPNVVSSWIKYAKFEMRR 207
Q A + +Y FE ++ E + ++++ F E V+ +P+ +W Y +
Sbjct: 301 KQDAQNLFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESD 360
Query: 208 GEIDRARNVYERA 220
+ + R VYERA
Sbjct: 361 ADAETVREVYERA 373
Score = 158 (60.7 bits), Expect = 9.0e-19, Sum P(2) = 9.0e-19
Identities = 44/140 (31%), Positives = 70/140 (50%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
SI + P + ++ Y + E EFDR R ++E LE N T W K+AE E I I+
Sbjct: 455 SIGKCPKNK-LFKGYIELELQLREFDRCRKLYEKFLEFAPENCTSWIKFAELETILGDID 513
Query: 111 HARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI 167
AR +++ A++ P +D LW YI E R ++ R + T + W+S+
Sbjct: 514 RARAIYELAISQ-PRLDMPEVLWKSYIDFEIEQEEYEKTRNLYRRLLQRTQHVKVWISFA 572
Query: 168 KFEL---RYEQVELARQVFE 184
+FEL + E + RQ++E
Sbjct: 573 QFELSAGKEESLSKCRQIYE 592
Score = 147 (56.8 bits), Expect = 8.6e-83, Sum P(4) = 8.6e-83
Identities = 26/68 (38%), Positives = 45/68 (66%)
Query: 404 ERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEES-QKTNFKILEA 462
E FG ++ ++P+K+KKRR++ +++G AG+EEY DY+FPE++ + N K+L
Sbjct: 618 EEEFGTDSTKERIEKLMPEKIKKRRKLQAEDGSDAGWEEYYDYIFPEDTANQPNLKLLAM 677
Query: 463 ASKWIKKK 470
A W K++
Sbjct: 678 AKLWKKQQ 685
Score = 120 (47.3 bits), Expect = 9.8e-15, Sum P(2) = 9.8e-15
Identities = 30/112 (26%), Positives = 57/112 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + WI +A+ E + DRAR+++ELA+ + + LW Y +F
Sbjct: 482 RKLYEKFLEFAPENCTSWIKFAELETILGDIDRARAIYELAISQPRLDMPEVLWKSYIDF 541
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG---NVAAARLIFD 151
E+ + RN++ R + HV ++W + + E AG +++ R I++
Sbjct: 542 EIEQEEYEKTRNLYRRLLQRTQHV-KVWISFAQFELSAGKEESLSKCRQIYE 592
Score = 87 (35.7 bits), Expect = 8.6e-83, Sum P(4) = 8.6e-83
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDGGNPDLSEA-DLC 340
K+YI FE Q T+H+KVWIS+A+FE SA G LS+ +
Sbjct: 536 KSYIDFEIEQEEYEKTRNLYRRLLQRTQHVKVWISFAQFELSA----GKEESLSKCRQIY 591
Query: 341 ERKKQSIRGARRSHRKI 357
E +++R ++
Sbjct: 592 EEANKAMRNCEEKEERV 608
Score = 42 (19.8 bits), Expect = 4.3e-78, Sum P(4) = 4.3e-78
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 312 KVWISYAKFE 321
K+W+ YA+FE
Sbjct: 430 KIWLLYAQFE 439
Score = 42 (19.8 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 7/11 (63%), Positives = 9/11 (81%)
Query: 311 LKVWISYAKFE 321
+K WI YA+FE
Sbjct: 232 VKNWIKYARFE 242
Score = 41 (19.5 bits), Expect = 8.6e-83, Sum P(4) = 8.6e-83
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 260 KEFGDWVLIEDAIVGK 275
K+FGD IED IV K
Sbjct: 316 KKFGDRRGIEDIIVSK 331
Score = 38 (18.4 bits), Expect = 1.1e-77, Sum P(4) = 1.1e-77
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +WI+YA +E
Sbjct: 388 RYIYLWINYALYE 400
>TAIR|locus:2089999 [details] [associations]
symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
Length = 657
Score = 458 (166.3 bits), Expect = 1.0e-81, Sum P(4) = 1.0e-81
Identities = 82/144 (56%), Positives = 108/144 (75%)
Query: 77 RARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRM 136
R R +E + N +W KYA+FEM NK +N ARNVWDRAV++LP VDQLWYK+I M
Sbjct: 75 RRRKEFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHM 134
Query: 137 EEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS 196
EE GN+A AR I +RW+H +PDQQAWL +IKFEL+Y ++E AR ++ER V CHP V S+
Sbjct: 135 EEKLGNIAGARQILERWIHCSPDQQAWLCFIKFELKYNEIECARSIYERFVLCHPKV-SA 193
Query: 197 WIKYAKFEMRRGEIDRARNVYERA 220
+I+YAKFEM+ G+++ A V+ERA
Sbjct: 194 YIRYAKFEMKHGQVELAMKVFERA 217
Score = 301 (111.0 bits), Expect = 5.4e-59, Sum P(4) = 5.4e-59
Identities = 81/231 (35%), Positives = 121/231 (52%)
Query: 4 KNPRGAPIRKTAEQILRESQEH----FG--EQKSVDPTELYDYRLHKRNDFEDSIRRVPG 57
KN API+ TAEQILRE++E F Q D EL DYRL +R +FED IRR
Sbjct: 30 KNKTPAPIQITAEQILREARERQEAEFRPPNQTITDSAELSDYRLRRRKEFEDQIRRARL 89
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+T VW+ YA +E + AR++W+ A+ R LW K+ E I AR + +
Sbjct: 90 NTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPRVDQLWYKFIHMEEKLGNIAGARQILE 149
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
R + P Q W +I+ E + AR I++R++ P A++ Y KFE+++ QVE
Sbjct: 150 RWIHCSPD-QQAWLCFIKFELKYNEIECARSIYERFVLCHPKVSAYIRYAKFEMKHGQVE 208
Query: 178 LARQVFERL---VQCHPNVVSSWIKYAKFEMR-RGEID-----RARNVYER 219
LA +VFER + ++ +A+FE + + +D RA N+Y +
Sbjct: 209 LAMKVFERAKKELADDEEAEILFVAFAEFEEQYKFALDQIPKGRAENLYSK 259
Score = 235 (87.8 bits), Expect = 1.0e-81, Sum P(4) = 1.0e-81
Identities = 47/102 (46%), Positives = 65/102 (63%)
Query: 374 VFEKGINYYKTSAPXXXXXXXXXXXXXXNMERSFGELGDVNLVQAMLPKKLKKRRQIASD 433
+F++ Y K S P NME FG+LGDV +VQ+ LPKK+KKR+ + +
Sbjct: 555 IFDRANTYNKDSTPELKEERAMLLEDWLNMETGFGKLGDVRVVQSKLPKKVKKRKLSSRE 614
Query: 434 NGLSAGYEEYIDYLFPEESQKTNFKILEAASKWIKKKIVSND 475
+G + YEEY DYLFPEES+ T+ KILEAA KW K+K+ + +
Sbjct: 615 DGCTE-YEEYTDYLFPEESETTSLKILEAAHKWKKQKVKAGE 655
Score = 196 (74.1 bits), Expect = 6.2e-42, Sum P(3) = 6.2e-42
Identities = 51/193 (26%), Positives = 94/193 (48%)
Query: 44 KRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELAL------EEDCRNHT--- 94
+R +ED +R+ P + W ++ + E + DR R ++E A+ E + +
Sbjct: 281 RRCQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRY 340
Query: 95 --LWCKYAEF-EMINKFINHARNVWDRAVAVLPHVD----QLWYKYIRMEEIAGNVAAAR 147
LW YA F EM+ + + R+V+ + ++PH ++W + E N+ AR
Sbjct: 341 IYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGAR 400
Query: 148 LIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR 207
I + P + + YI+ EL+ ++ R+++ER ++ P +W KYA+FEM
Sbjct: 401 QILGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSL 460
Query: 208 GEIDRARNVYERA 220
E +R R ++E A
Sbjct: 461 AETERTRAIFELA 473
Score = 181 (68.8 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
Identities = 46/168 (27%), Positives = 81/168 (48%)
Query: 61 VWINYAKW-EGSQNEFDRARSMWELALEEDCRNH----TLWCKYAEFEMINKFINHARNV 115
+WINYA + E + + R ++ L+ + +W A+ E+ + AR +
Sbjct: 343 LWINYAFFAEMVTEDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQI 402
Query: 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYE 174
A+ P D+++ KYI +E N+ R +++R++ W+P AW Y +FE+
Sbjct: 403 LGNAIGKAPK-DKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLA 461
Query: 175 QVELARQVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYER 219
+ E R +FE + P + W Y FE+ GE++R R +YER
Sbjct: 462 ETERTRAIFELAIS-QPALDMPELLWKTYIDFEISEGELERTRALYER 508
Score = 139 (54.0 bits), Expect = 6.4e-27, Sum P(2) = 6.4e-27
Identities = 37/124 (29%), Positives = 59/124 (47%)
Query: 50 DSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFI 109
++I + P D ++ Y + E DR R ++E LE N W KYAEFEM
Sbjct: 405 NAIGKAPKDK-IFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAET 463
Query: 110 NHARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSY 166
R +++ A++ P +D LW YI E G + R +++R + T + W+ +
Sbjct: 464 ERTRAIFELAISQ-PALDMPELLWKTYIDFEISEGELERTRALYERLLDRTKHCKVWVDF 522
Query: 167 IKFE 170
KFE
Sbjct: 523 AKFE 526
Score = 125 (49.1 bits), Expect = 1.0e-81, Sum P(4) = 1.0e-81
Identities = 30/70 (42%), Positives = 34/70 (48%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDGGNPDLSEADLCE 341
K YI FE S+G TKH KVW+ +AKFEASA D E D E
Sbjct: 487 KTYIDFEISEGELERTRALYERLLDRTKHCKVWVDFAKFEASAAEH---KEDEEEEDAIE 543
Query: 342 RKKQSIRGAR 351
RKK I+ AR
Sbjct: 544 RKKDGIKRAR 553
Score = 124 (48.7 bits), Expect = 2.4e-25, Sum P(2) = 2.4e-25
Identities = 39/152 (25%), Positives = 68/152 (44%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ A+ E Q AR + A+ + ++ ++ KY E E+ + I+ R +++R +
Sbjct: 382 IWLLAAQHEIRQLNLTGARQILGNAIGKAPKDK-IFKKYIEIELQLRNIDRCRKLYERYL 440
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-D--QQAWLSYIKFELRYEQVE 177
P W KY E R IF+ + D + W +YI FE+ ++E
Sbjct: 441 EWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALDMPELLWKTYIDFEISEGELE 500
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209
R ++ERL+ W+ +AKFE E
Sbjct: 501 RTRALYERLLD-RTKHCKVWVDFAKFEASAAE 531
Score = 108 (43.1 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 26/98 (26%), Positives = 49/98 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + PG+ W YA++E S E +R R+++ELA+ + + LW Y +F
Sbjct: 433 RKLYERYLEWSPGNCYAWRKYAEFEMSLAETERTRAIFELAISQPALDMPELLWKTYIDF 492
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA 140
E+ + R +++R + H ++W + + E A
Sbjct: 493 EISEGELERTRALYERLLDRTKHC-KVWVDFAKFEASA 529
Score = 80 (33.2 bits), Expect = 7.0e-30, Sum P(3) = 7.0e-30
Identities = 37/170 (21%), Positives = 71/170 (41%)
Query: 69 EGSQNEF-DRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD 127
EG ++ + R +E + ++ N+ W + E + R +++RAVA +P +
Sbjct: 271 EGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPE 330
Query: 128 ----QLWYKYIRM--------EEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ 175
+ W +YI + E + +V + R ++ + P + S+ K L Q
Sbjct: 331 AQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDVYRACLKLIPHSK--FSFAKIWLLAAQ 388
Query: 176 VELARQVFERLVQCHPNVVSS------WIKYAKFEMRRGEIDRARNVYER 219
E+ + Q N + + KY + E++ IDR R +YER
Sbjct: 389 HEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLRNIDRCRKLYER 438
Score = 57 (25.1 bits), Expect = 2.3e-18, Sum P(2) = 2.3e-18
Identities = 20/74 (27%), Positives = 34/74 (45%)
Query: 163 WLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSWIKYAK--------------FEMR 206
W +YI FE+ ++E R ++ERL+ H V + K+ E +
Sbjct: 486 WKTYIDFEISEGELERTRALYERLLDRTKHCKVWVDFAKFEASAAEHKEDEEEEDAIERK 545
Query: 207 RGEIDRARNVYERA 220
+ I RAR +++RA
Sbjct: 546 KDGIKRAREIFDRA 559
Score = 44 (20.5 bits), Expect = 1.0e-81, Sum P(4) = 1.0e-81
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 260 KEFGDWVLIEDAIVGK 275
K+ GD IEDAI+GK
Sbjct: 265 KQNGDKEGIEDAIIGK 280
Score = 44 (20.5 bits), Expect = 2.9e-73, Sum P(4) = 2.9e-73
Identities = 16/52 (30%), Positives = 20/52 (38%)
Query: 276 GKAPKDKA---YIHFE-KSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEAS 323
GKAPKDK YI E + + + W YA+FE S
Sbjct: 408 GKAPKDKIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMS 459
Score = 40 (19.1 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 312 KVWISYAKFE 321
+VW+ YA FE
Sbjct: 92 QVWVKYADFE 101
Score = 38 (18.4 bits), Expect = 1.2e-72, Sum P(4) = 1.2e-72
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 309 KHLKVWISYAKFEASALSKD 328
+++ +WI+YA F A +++D
Sbjct: 339 RYIYLWINYAFF-AEMVTED 357
Score = 38 (18.4 bits), Expect = 2.2e-16, Sum P(2) = 2.2e-16
Identities = 8/38 (21%), Positives = 14/38 (36%)
Query: 284 YIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFE 321
+IH E+ G + + W+ + KFE
Sbjct: 131 FIHMEEKLGNIAGARQILERWIHCSPDQQAWLCFIKFE 168
>WB|WBGene00019762 [details] [associations]
symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
Length = 747
Score = 547 (197.6 bits), Expect = 4.5e-80, Sum P(4) = 4.5e-80
Identities = 109/224 (48%), Positives = 144/224 (64%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSIRRVP 56
KN A ++ TAEQ+LRE++E E K DP EL +Y+ KR +FED IR+
Sbjct: 24 KNKAPAQLQITAEQLLREAKERELELIPPAPKTKITDPDELKEYQRKKRKEFEDGIRKNR 83
Query: 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVW 116
A WI Y KWE S E RARS++E AL+ D R+ ++W +YAE EM K INHARNV+
Sbjct: 84 MQLANWIKYGKWEESIGEIQRARSVFERALDVDHRSISIWLQYAEMEMRCKQINHARNVF 143
Query: 117 DRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQV 176
DRA+ ++P Q W KY MEE+ N+ AR IF+RW+ W P +QAW +YI FELRY+++
Sbjct: 144 DRAITIMPRAMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPEQAWQTYINFELRYKEI 203
Query: 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ AR V++R + H V +WIKYAKFE R G I AR YE+A
Sbjct: 204 DRARSVYQRFLHVHGINVQNWIKYAKFEERNGYIGNARAAYEKA 247
Score = 195 (73.7 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 47/163 (28%), Positives = 83/163 (50%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
VWI +A +E Q + + AR + +A+ + C L+ Y + E+ + + R ++++ +
Sbjct: 424 VWIMFAHFEIRQLDLNAARKIMGVAIGK-CPKDKLFRAYIDLELQLREFDRCRKLYEKFL 482
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-D--QQAWLSYIKFELRYEQVE 177
P Q W K+ +E + G+ +R +F + D + W +YI FE+ E+ E
Sbjct: 483 ESSPESSQTWIKFAELETLLGDTDRSRAVFTIAVQQPALDMPELLWKAYIDFEIACEEHE 542
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
AR ++E L+Q N + WI A+FE G + AR +ERA
Sbjct: 543 KARDLYETLLQ-RTNHIKVWISMAEFEQTIGNFEGARKAFERA 584
Score = 169 (64.5 bits), Expect = 4.5e-80, Sum P(4) = 4.5e-80
Identities = 29/68 (42%), Positives = 52/68 (76%)
Query: 404 ERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEE-SQKTNFKILEA 462
E G+ + V+ M+P+++KKRRQI +++G+ AG+EEY DY+FP++ + K +FK+LEA
Sbjct: 607 ETKSGDQEALKRVETMMPRRVKKRRQIQTEDGVDAGWEEYFDYIFPQDQAAKGSFKLLEA 666
Query: 463 ASKWIKKK 470
A++W +++
Sbjct: 667 AARWKRER 674
Score = 161 (61.7 bits), Expect = 3.4e-25, Sum P(3) = 3.4e-25
Identities = 46/167 (27%), Positives = 83/167 (49%)
Query: 61 VWINYAKWEGS-QNEFDRARSMWELALEE-DCRNHT---LWCKYAEFEMINKFINHARNV 115
+WINYA +E +FDRAR +++ ++ + T +W +A FE+ +N AR +
Sbjct: 385 LWINYALYEELVAKDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLDLNAARKI 444
Query: 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYE 174
A+ P D+L+ YI +E R ++++++ +P+ Q W+ + + E
Sbjct: 445 MGVAIGKCPK-DKLFRAYIDLELQLREFDRCRKLYEKFLESSPESSQTWIKFAELETLLG 503
Query: 175 QVELARQVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYE 218
+ +R VF VQ P + W Y FE+ E ++AR++YE
Sbjct: 504 DTDRSRAVFTIAVQ-QPALDMPELLWKAYIDFEIACEEHEKARDLYE 549
Score = 137 (53.3 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
Identities = 44/145 (30%), Positives = 65/145 (44%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
+I + P D ++ Y E EFDR R ++E LE + W K+AE E + +
Sbjct: 448 AIGKCPKDK-LFRAYIDLELQLREFDRCRKLYEKFLESSPESSQTWIKFAELETLLGDTD 506
Query: 111 HARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI 167
+R V+ AV P +D LW YI E AR +++ + T + W+S
Sbjct: 507 RSRAVFTIAVQQ-PALDMPELLWKAYIDFEIACEEHEKARDLYETLLQRTNHIKVWISMA 565
Query: 168 KFELRYEQVELARQVFERLVQCHPN 192
+FE E AR+ FER Q N
Sbjct: 566 EFEQTIGNFEGARKAFERANQSLEN 590
Score = 133 (51.9 bits), Expect = 2.6e-22, Sum P(3) = 2.6e-22
Identities = 52/192 (27%), Positives = 86/192 (44%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R FE I P + A W Y +E E DRARS+++ L N W KYA+FE
Sbjct: 174 RQIFERWIEWEPPEQA-WQTYINFELRYKEIDRARSVYQRFLHVHGINVQNWIKYAKFEE 232
Query: 105 INKFINHARNVWDRAVAVLPHVD---QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-- 159
N +I +AR +++A+ D + + EE AR IF + P
Sbjct: 233 RNGYIGNARAAYEKAMEYFGEEDINETVLVAFALFEERQKEHERARGIFKYGLDNLPSNR 292
Query: 160 -QQAWLSYIKFELRY------EQVELARQV--FERLVQCHPNVVSSWIKYAKFEMRRGEI 210
++ + Y + E ++ E V ++++ +E++V+ + +W Y + + E
Sbjct: 293 TEEIFKHYTQHEKKFGERVGIEDVIISKRKTQYEKMVEENGYNYDAWFDYLRL-LENEET 351
Query: 211 DR--ARNVYERA 220
DR +VYERA
Sbjct: 352 DREEVEDVYERA 363
Score = 120 (47.3 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
Identities = 27/110 (24%), Positives = 55/110 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R +E + P + WI +A+ E + DR+R+++ +A+++ + LW Y +F
Sbjct: 475 RKLYEKFLESSPESSQTWIKFAELETLLGDTDRSRAVFTIAVQQPALDMPELLWKAYIDF 534
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDR 152
E+ + AR++++ + H+ ++W E+ GN AR F+R
Sbjct: 535 EIACEEHEKARDLYETLLQRTNHI-KVWISMAEFEQTIGNFEGARKAFER 583
Score = 78 (32.5 bits), Expect = 4.5e-80, Sum P(4) = 4.5e-80
Identities = 23/74 (31%), Positives = 31/74 (41%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDGGNPDLSEADLCE 341
KAYI FE + T H+KVWIS A+FE + + +G E
Sbjct: 529 KAYIDFEIACEEHEKARDLYETLLQRTNHIKVWISMAEFEQTIGNFEGARKAF------E 582
Query: 342 RKKQSIRGARRSHR 355
R QS+ A + R
Sbjct: 583 RANQSLENAEKEER 596
Score = 76 (31.8 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHT-LWCKYAEFEM-INKFINHARNVWDR 118
+W Y +E + E ++AR ++E L+ NH +W AEFE I F AR ++R
Sbjct: 527 LWKAYIDFEIACEEHEKARDLYETLLQRT--NHIKVWISMAEFEQTIGNF-EGARKAFER 583
Query: 119 AVAVLPHVDQ 128
A L + ++
Sbjct: 584 ANQSLENAEK 593
Score = 61 (26.5 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
Identities = 33/149 (22%), Positives = 56/149 (37%)
Query: 314 WISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSG 373
WI YAKFE N + A K G + + FA L
Sbjct: 224 WIKYAKFEER-------NGYIGNARAAYEKAMEYFGEEDINETVLVAFA--LFEERQKEH 274
Query: 374 VFEKGI-NYYKTSAPXXXXXXXXXXXXXXNMERSFGELGDVNLVQAMLPKKLKKRRQIAS 432
+GI Y + P E+ FGE V + ++ K+ + ++
Sbjct: 275 ERARGIFKYGLDNLPSNRTEEIFKHYTQH--EKKFGER--VGIEDVIISKRKTQYEKMVE 330
Query: 433 DNGLSAGYEEYIDYLFPEESQKTNFKILE 461
+NG + Y+ + DYL E+++T+ + +E
Sbjct: 331 ENGYN--YDAWFDYLRLLENEETDREEVE 357
Score = 53 (23.7 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 44 KRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELA 85
K D +++ + VWI+ A++E + F+ AR +E A
Sbjct: 543 KARDLYETLLQRTNHIKVWISMAEFEQTIGNFEGARKAFERA 584
Score = 51 (23.0 bits), Expect = 4.5e-80, Sum P(4) = 4.5e-80
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 260 KEFGDWVLIEDAIVGKGKAPKDK 282
K+FG+ V IED I+ K K +K
Sbjct: 305 KKFGERVGIEDVIISKRKTQYEK 327
Score = 42 (19.8 bits), Expect = 2.6e-76, Sum P(4) = 2.6e-76
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 312 KVWISYAKFEASALSKDGGNPDLSEA-DLCERKK 344
KVWI +A FE L + + A C + K
Sbjct: 423 KVWIMFAHFEIRQLDLNAARKIMGVAIGKCPKDK 456
Score = 42 (19.8 bits), Expect = 6.8e-72, Sum P(3) = 6.8e-72
Identities = 15/53 (28%), Positives = 21/53 (39%)
Query: 273 VGKGKAPKDK---AYIHFE-KSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFE 321
V GK PKDK AYI E + + + + WI +A+ E
Sbjct: 447 VAIGKCPKDKLFRAYIDLELQLREFDRCRKLYEKFLESSPESSQTWIKFAELE 499
Score = 41 (19.5 bits), Expect = 3.3e-76, Sum P(4) = 3.3e-76
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 309 KHLKVWISYAKFEASALSKD 328
+++ +WI+YA +E ++KD
Sbjct: 381 RYIYLWINYALYE-ELVAKD 399
>TAIR|locus:2080853 [details] [associations]
symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
Length = 413
Score = 702 (252.2 bits), Expect = 6.2e-75, Sum P(3) = 6.2e-75
Identities = 131/225 (58%), Positives = 164/225 (72%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFG-------EQKSVDPTELYDYRLHKRNDFEDSIRRVP 56
KN AP++ TAEQ+L+E++E +QK D EL +YRL +R +FED IR
Sbjct: 9 KNKTPAPVQITAEQVLKEAREREDSRILRPPKQKITDSDELAEYRLRRRKEFEDQIRGAK 68
Query: 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDC-RNHTLWCKYAEFEMINKFINHARNV 115
++ VW+ YA WE SQ + DRARS+WE ALE++ RNHTLW KYAEFEM NK +NHARNV
Sbjct: 69 TNSQVWVRYADWEESQKDHDRARSVWERALEDESYRNHTLWLKYAEFEMRNKSVNHARNV 128
Query: 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ 175
WDRAV +LP VDQ WYKYI MEEI GN+ AR IF+RWM W+PDQQAWL +IKFELRY +
Sbjct: 129 WDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSPDQQAWLCFIKFELRYNE 188
Query: 176 VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+E +R ++ER V CHP SS+I+YAKFEM+ ++ AR VYERA
Sbjct: 189 IERSRSIYERFVLCHPKA-SSFIRYAKFEMKNSQVSLARIVYERA 232
Score = 207 (77.9 bits), Expect = 2.1e-15, Sum P(3) = 2.1e-15
Identities = 49/164 (29%), Positives = 89/164 (54%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YA++E + AR++W+ A++ R W KY E I I+ AR +++R +
Sbjct: 108 LWLKYAEFEMRNKSVNHARNVWDRAVKILPRVDQFWYKYIHMEEILGNIDGARKIFERWM 167
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELAR 180
P Q W +I+ E + +R I++R++ P +++ Y KFE++ QV LAR
Sbjct: 168 DWSPD-QQAWLCFIKFELRYNEIERSRSIYERFVLCHPKASSFIRYAKFEMKNSQVSLAR 226
Query: 181 QVFERLVQCHPNVVSS----WIKYAKFEMRRGEIDRARNVYERA 220
V+ER ++ +V ++ +A+FE E++RAR +Y+ A
Sbjct: 227 IVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYA 270
Score = 177 (67.4 bits), Expect = 7.7e-11, Sum P(2) = 7.7e-11
Identities = 53/179 (29%), Positives = 93/179 (51%)
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCR-NHTLWCKYAEFEMINKFINHARNVW 116
D W+ + K+E NE +R+RS++E + C + + +YA+FEM N ++ AR V+
Sbjct: 172 DQQAWLCFIKFELRYNEIERSRSIYERFVL--CHPKASSFIRYAKFEMKNSQVSLARIVY 229
Query: 117 DRAVAVLPHVDQ----LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA---WLSYIKF 169
+RA+ +L V++ ++ + EE+ V AR ++ + P +A + ++ F
Sbjct: 230 ERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAF 289
Query: 170 ELRY---EQVELA----RQV-FERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
E +Y E ++ A R++ +E V+ +P SW Y E G+ DR R VYERA
Sbjct: 290 EKQYGNKEGIDDAIVGRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRIREVYERA 348
Score = 133 (51.9 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 48/181 (26%), Positives = 83/181 (45%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALE--EDCRNHT--LWCKYAEFEMINKFINHARNVWD 117
+I YAK+E ++ AR ++E A+E +D ++ +AEFE + K + AR ++
Sbjct: 209 FIRYAKFEMKNSQVSLARIVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERARFLYK 268
Query: 118 RAVAVLP--HVDQLWYKYIRMEEIAGN--------VAAARLIFDRWMHWTP-DQQAWLSY 166
A+ +P + L+ K++ E+ GN V +L ++ + P + +W Y
Sbjct: 269 YALDHIPKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNPLNYDSWFDY 328
Query: 167 IKFELRYEQVELARQVFERLVQCHP---------NVVSSWIKYAKFEMRRGE-IDRARNV 216
I E + R+V+ER + P + WI YA FE E ++R R V
Sbjct: 329 ISLEETLGDKDRIREVYERAIANVPLAEEKRYWQRYIYLWIDYALFEEILAEDVERTRAV 388
Query: 217 Y 217
Y
Sbjct: 389 Y 389
Score = 43 (20.2 bits), Expect = 6.2e-75, Sum P(3) = 6.2e-75
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 260 KEFGDWVLIEDAIVGKGK 277
K++G+ I+DAIVG+ K
Sbjct: 291 KQYGNKEGIDDAIVGRRK 308
Score = 42 (19.8 bits), Expect = 6.2e-75, Sum P(3) = 6.2e-75
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 309 KHLKVWISYAKFEASALSKD 328
+++ +WI YA FE L++D
Sbjct: 363 RYIYLWIDYALFE-EILAED 381
>DICTYBASE|DDB_G0278819 [details] [associations]
symbol:DDB_G0278819 "HAT repeat-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
Uniprot:Q54XP4
Length = 705
Score = 552 (199.4 bits), Expect = 1.7e-73, Sum P(4) = 1.7e-73
Identities = 113/224 (50%), Positives = 145/224 (64%)
Query: 4 KNPRGAPIRKTAEQILR---ESQEHFGEQ--KSV--DPTELYDYRLHKRNDFEDSIRRVP 56
KN AP++ TAEQILR E+Q+ + K V D EL DYRL KR +E + R
Sbjct: 13 KNKSAAPVQITAEQILRVAHENQQTLPKAPPKQVITDQEELEDYRLRKRQQYESLLGRNR 72
Query: 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVW 116
A++I YA WE SQ + RARS++E L+ D R T+W KYAE EM NK IN ARN+W
Sbjct: 73 KTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIW 132
Query: 117 DRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQV 176
DRAV +LP V QLW+KY ME++ GN AAR IF+RWM W P+ QAW SY+KFE R +
Sbjct: 133 DRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQWKPEPQAWNSYLKFEQRLKLF 192
Query: 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
E R +FE+ + HP + +WIKY KFE R G I+ AR +++RA
Sbjct: 193 ENTRLIFEKYILVHP-YIKTWIKYTKFEERLGNIENARTIFQRA 235
Score = 216 (81.1 bits), Expect = 2.7e-26, Sum P(4) = 2.7e-26
Identities = 58/177 (32%), Positives = 91/177 (51%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE-MIN 106
F D R+P VWI YA+ E + AR++W+ A+ R LW KY E M+
Sbjct: 101 FLDIDHRIP---TVWIKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFKYTFMEDMLG 157
Query: 107 KFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSY 166
+ AR +++R + P Q W Y++ E+ RLIF++++ P + W+ Y
Sbjct: 158 NY-PAARAIFERWMQWKPE-PQAWNSYLKFEQRLKLFENTRLIFEKYILVHPYIKTWIKY 215
Query: 167 IKFELRYEQVELARQVFERLVQC---HPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
KFE R +E AR +F+R ++ N +I +AKFE + EI+RAR +Y+ A
Sbjct: 216 TKFEERLGNIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYA 272
Score = 212 (79.7 bits), Expect = 6.5e-25, Sum P(3) = 6.5e-25
Identities = 58/225 (25%), Positives = 111/225 (49%)
Query: 11 IRKTAEQILRESQEHFGEQKSVDPTELYDYRL-HKRNDFEDSIRRVPGDTAVWINYAKWE 69
+ K+ + L ++ +F +Q D + D L KR +E+ I++ + +W +Y K E
Sbjct: 276 VPKSRAKDLFDTFTNFEKQHG-DRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKME 334
Query: 70 GSQNEFDRARSMWELALEE----DCRNHT-----LWCKYAEFE-MINKFINHARNVWDRA 119
E ++ R ++E ++ + + H LW YA FE +I+K + AR+V+
Sbjct: 335 EINGEIEKTREIYERSIGNLPPTNEKKHWKRYIYLWINYALFEELISKDMERARSVYSEC 394
Query: 120 VAVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ 175
+ ++PH + ++W Y E N+ ARLI+ + + P + + YI E+
Sbjct: 395 IKLIPHKEFSFSKIWILYANFEIRQLNLDKARLIYGQAIGRNPKSKIFDQYIHLEIELGN 454
Query: 176 VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ R ++E+ ++ P+ +W K+A+ E GE RAR ++E A
Sbjct: 455 FDRVRTLYEKYLEIMPDNCDAWCKFAQLETELGETVRARAIFELA 499
Score = 179 (68.1 bits), Expect = 9.3e-22, Sum P(4) = 9.3e-22
Identities = 42/171 (24%), Positives = 87/171 (50%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
RN ++ ++ +P + +W Y E + AR+++E ++ W Y +FE
Sbjct: 129 RNIWDRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQWKPEPQA-WNSYLKFEQ 187
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP----DQ 160
K + R ++++ + V P++ + W KY + EE GN+ AR IF R + + D+
Sbjct: 188 RLKLFENTRLIFEKYILVHPYI-KTWIKYTKFEERLGNIENARTIFQRAIEFLGEDGNDE 246
Query: 161 QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI--KYAKFEMRRGE 209
Q ++++ KFE +Y+++E AR +++ + P + + + FE + G+
Sbjct: 247 QLFIAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGD 297
Score = 160 (61.4 bits), Expect = 8.4e-19, Sum P(3) = 8.4e-19
Identities = 42/168 (25%), Positives = 83/168 (49%)
Query: 61 VWINYAKWEGS-QNEFDRARSMW----ELALEEDCRNHTLWCKYAEFEMINKFINHARNV 115
+WINYA +E + +RARS++ +L ++ +W YA FE+ ++ AR +
Sbjct: 369 LWINYALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDKARLI 428
Query: 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYE 174
+ +A+ P +++ +YI +E GN R ++++++ PD AW + + E
Sbjct: 429 YGQAIGRNPK-SKIFDQYIHLEIELGNFDRVRTLYEKYLEIMPDNCDAWCKFAQLETELG 487
Query: 175 QVELARQVFERLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYER 219
+ AR +FE +Q PN+ W + E++ + D + +Y +
Sbjct: 488 ETVRARAIFELAIQ-QPNLDRPEVVWKDFIDSEIQLKQFDFVKQLYRK 534
Score = 133 (51.9 bits), Expect = 1.7e-73, Sum P(4) = 1.7e-73
Identities = 31/69 (44%), Positives = 44/69 (63%)
Query: 404 ERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEE--SQKTNFKILE 461
E++FG +N V +P+++ KRR + NG G EEY DY+FPEE S +T+ K+LE
Sbjct: 624 EQTFGNQETLNQVLKKIPQRVIKRR--SDGNG---GIEEYFDYIFPEEEKSTQTSLKLLE 678
Query: 462 AASKWIKKK 470
AA +W K K
Sbjct: 679 AAQRWKKLK 687
Score = 109 (43.4 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 38/153 (24%), Positives = 73/153 (47%)
Query: 36 ELYDYRLHK-RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHT 94
E+ L K R + +I R P + ++ Y E FDR R+++E LE N
Sbjct: 416 EIRQLNLDKARLIYGQAIGRNP-KSKIFDQYIHLEIELGNFDRVRTLYEKYLEIMPDNCD 474
Query: 95 LWCKYAEFEM-INKFINHARNVWDRAVAVLPHVDQ---LWYKYIRMEEIAGNVAAARLIF 150
WCK+A+ E + + + AR +++ A+ P++D+ +W +I E + ++
Sbjct: 475 AWCKFAQLETELGETVR-ARAIFELAIQQ-PNLDRPEVVWKDFIDSEIQLKQFDFVKQLY 532
Query: 151 DRWMHWTPDQQAWLSYIKF--ELRYEQVELARQ 181
+ + T + W+ +IKF ++ +Q + RQ
Sbjct: 533 RKLLEKTNHVKVWIGFIKFVHSIKDKQQQKQRQ 565
Score = 53 (23.7 bits), Expect = 1.7e-73, Sum P(4) = 1.7e-73
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 308 TKHLKVWISYAKFEASALSK 327
T H+KVWI + KF S K
Sbjct: 539 TNHVKVWIGFIKFVHSIKDK 558
Score = 49 (22.3 bits), Expect = 4.4e-73, Sum P(4) = 4.4e-73
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 312 KVWISYAKFEASALSKD 328
K+WI YA FE L+ D
Sbjct: 407 KIWILYANFEIRQLNLD 423
Score = 48 (22.0 bits), Expect = 5.6e-73, Sum P(4) = 5.6e-73
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 309 KHLKVWISYAKFEASALSKD 328
+++ +WI+YA FE +SKD
Sbjct: 365 RYIYLWINYALFE-ELISKD 383
Score = 47 (21.6 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 310 HLKVWISYAKFE 321
++K WI Y KFE
Sbjct: 208 YIKTWIKYTKFE 219
Score = 44 (20.5 bits), Expect = 1.7e-73, Sum P(4) = 1.7e-73
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 260 KEFGDWVLIEDAIVGK 275
K+ GD + IED ++GK
Sbjct: 293 KQHGDRIGIEDVVLGK 308
>ASPGD|ASPL0000053069 [details] [associations]
symbol:AN1259 species:162425 "Emericella nidulans"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
Length = 673
Score = 523 (189.2 bits), Expect = 2.2e-69, Sum P(3) = 2.2e-69
Identities = 105/220 (47%), Positives = 139/220 (63%)
Query: 4 KNPRGAPIRKTAEQILRES---QE---HFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPG 57
KN AP++ +AEQ+LRE+ QE Q+ D EL++Y+ KR +FED +RR
Sbjct: 11 KNKAPAPVQISAEQLLREAVDRQEPSLQAPTQRFADLEELHEYQGRKRKEFEDYVRRNRI 70
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+ W+ YA WE Q EF RARS++E AL+ D + LW +Y E EM N+ INHARN+ D
Sbjct: 71 NMNNWMRYAAWELEQKEFRRARSIFERALDVDSTSVPLWIRYIESEMRNRNINHARNLLD 130
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
RAV +LP VD+LWYKY+ MEE GN+ R +F+RWM W PD+ AW +YIK E RY + E
Sbjct: 131 RAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPDEGAWSAYIKLEKRYNEFE 190
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVY 217
AR +F+R HP +WIK+A+FE G D R VY
Sbjct: 191 RARAIFQRFTIVHPEP-RNWIKWARFEEEYGTSDLVREVY 229
Score = 184 (69.8 bits), Expect = 3.0e-24, Sum P(3) = 3.0e-24
Identities = 56/227 (24%), Positives = 106/227 (46%)
Query: 6 PRGAPIRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINY 65
PR I T + ++ FG+++ V+ L R+ ++++R VW ++
Sbjct: 274 PRSKSI--TLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNYD----VWFDF 327
Query: 66 AKWEGSQNEFDRARSMWELALEE----DCRNHT-----LWCKYAEFE-MINKFINHARNV 115
A+ E + +R R ++E A+ + + H LW YA +E M K I+ AR V
Sbjct: 328 ARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWEEMEAKDIDRARQV 387
Query: 116 WDRAVAVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFEL 171
+ + ++PH ++W + E N+ AAR + + P + + YI E
Sbjct: 388 YTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQAIGMCPKDKLFRGYIDLER 447
Query: 172 RYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYE 218
+ + R ++E+ ++ +P+ SWI+YA+ E + +RAR +YE
Sbjct: 448 QLFEFVRCRTLYEKQIEWNPSNSQSWIQYAELERGLDDTERARAIYE 494
Score = 180 (68.4 bits), Expect = 8.8e-24, Sum P(3) = 8.8e-24
Identities = 56/213 (26%), Positives = 97/213 (45%)
Query: 12 RKTAEQILRESQEHFGEQKSVDPTELYDYRLHK-RNDFEDSIRRVPGDTAVWINYAKWEG 70
RK E +R ++ + EL + R+ FE ++ +WI Y + E
Sbjct: 58 RKEFEDYVRRNRINMNNWMRYAAWELEQKEFRRARSIFERALDVDSTSVPLWIRYIESEM 117
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLW 130
+ AR++ + A+ R LW KY E I R V++R ++ P + W
Sbjct: 118 RNRNINHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPD-EGAW 176
Query: 131 YKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQC- 189
YI++E+ AR IF R+ P+ + W+ + +FE Y +L R+V+ V+
Sbjct: 177 SAYIKLEKRYNEFERARAIFQRFTIVHPEPRNWIKWARFEEEYGTSDLVREVYGLAVETL 236
Query: 190 HPNVVSS--WIKYAKFEMRRGEIDRARNVYERA 220
+ + +I YA+FE + E +RAR +Y+ A
Sbjct: 237 GEDFMDEKLFIAYARFETKLKEYERARAIYKYA 269
Score = 142 (55.0 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 45/163 (27%), Positives = 76/163 (46%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE-MINKFINHARNVWDRA 119
VW+ A++E Q AR A+ C L+ Y + E + +F+ R ++++
Sbjct: 405 VWLMKAQFEVRQLNLQAARKTLGQAIGM-CPKDKLFRGYIDLERQLFEFVR-CRTLYEKQ 462
Query: 120 VAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW-TPD--QQAWLSYIKFELRYEQV 176
+ P Q W +Y +E + AR I++ + T D + W +YI FE +
Sbjct: 463 IEWNPSNSQSWIQYAELERGLDDTERARAIYELGIDQPTLDMPELVWKAYIDFEDDEGEY 522
Query: 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
E RQ++ERL+Q + V WI YA+FE+ + + ER
Sbjct: 523 ERERQLYERLLQ-KTDHVKVWINYARFEINVPDEEEEEEEEER 564
Score = 141 (54.7 bits), Expect = 2.8e-19, Sum P(3) = 2.8e-19
Identities = 56/192 (29%), Positives = 87/192 (45%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWE--LALEEDCRNHTLWCKYAEF 102
R FE + P D W Y K E NEF+RAR++++ + + RN W K+A F
Sbjct: 160 RQVFERWMSWEP-DEGAWSAYIKLEKRYNEFERARAIFQRFTIVHPEPRN---WIKWARF 215
Query: 103 EMINKFINHARNVWDRAVAVLPH--VDQ-LWYKYIRMEEIAGNVAAARLIFDRWMHWTPD 159
E + R V+ AV L +D+ L+ Y R E AR I+ + P
Sbjct: 216 EEEYGTSDLVREVYGLAVETLGEDFMDEKLFIAYARFETKLKEYERARAIYKYALDRLPR 275
Query: 160 QQAWL---SYIKFELRY------EQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRG 208
++ +Y FE ++ E V LA++ + Q N+ W +A+ E + G
Sbjct: 276 SKSITLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNYDVWFDFARLEEQSG 335
Query: 209 EIDRARNVYERA 220
+ +R R+VYERA
Sbjct: 336 DPERVRDVYERA 347
Score = 129 (50.5 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
Identities = 36/143 (25%), Positives = 62/143 (43%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R +I P D ++ Y E EF R R+++E +E + N W +YAE E
Sbjct: 423 RKTLGQAIGMCPKDK-LFRGYIDLERQLFEFVRCRTLYEKQIEWNPSNSQSWIQYAELER 481
Query: 105 INKFINHARNVWDRAV--AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA 162
AR +++ + L + +W YI E+ G R +++R + T +
Sbjct: 482 GLDDTERARAIYELGIDQPTLDMPELVWKAYIDFEDDEGEYERERQLYERLLQKTDHVKV 541
Query: 163 WLSYIKFELRYEQVELARQVFER 185
W++Y +FE+ E + ER
Sbjct: 542 WINYARFEINVPDEEEEEEEEER 564
Score = 119 (46.9 bits), Expect = 8.5e-17, Sum P(3) = 8.5e-17
Identities = 33/123 (26%), Positives = 53/123 (43%)
Query: 98 KYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW- 156
++A+ E ++++ R ++ V W +Y E AR IF+R +
Sbjct: 43 RFADLEELHEYQGRKRKEFEDYVRRNRINMNNWMRYAAWELEQKEFRRARSIFERALDVD 102
Query: 157 TPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNV 216
+ W+ YI+ E+R + AR + +R V P V W KY E G I R V
Sbjct: 103 STSVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDKLWYKYVYMEETLGNIPGTRQV 162
Query: 217 YER 219
+ER
Sbjct: 163 FER 165
Score = 115 (45.5 bits), Expect = 2.2e-69, Sum P(3) = 2.2e-69
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 404 ERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEESQKT-NF-KILE 461
E + G D++ ++ +P+++KKRR++ D YEEY+DY+FP + Q N K+L
Sbjct: 605 EHTHGSPEDIDKIEKQMPRRVKKRRKLDDDR-----YEEYMDYVFPADDQSAANLSKLLR 659
Query: 462 AASKWIKKKIVSNDQ 476
A +W K++ Q
Sbjct: 660 MAHQW-KQETAGGQQ 673
Score = 96 (38.9 bits), Expect = 2.2e-69, Sum P(3) = 2.2e-69
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDGGNPDLSEADLCE 341
KAYI FE +G T H+KVWI+YA+FE + ++ + E + +
Sbjct: 510 KAYIDFEDDEGEYERERQLYERLLQKTDHVKVWINYARFEINVPDEEEEEEE-EERPISD 568
Query: 342 RKKQSIRGA-RRSHR 355
K+ R R+HR
Sbjct: 569 EAKRRARAVFERAHR 583
Score = 91 (37.1 bits), Expect = 6.8e-14, Sum P(3) = 6.8e-14
Identities = 25/107 (23%), Positives = 51/107 (47%)
Query: 129 LWYKYIRMEEIAGNVAAARLIFDRWM----------HWTPDQQAWLSYIKFE-LRYEQVE 177
+W+ + R+EE +G+ R +++R + HW W+ Y +E + + ++
Sbjct: 323 VWFDFARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWEEMEAKDID 382
Query: 178 LARQVFERLVQCHPN----VVSSWIKYAKFEMRRGEIDRARNVYERA 220
ARQV+ ++ P+ W+ A+FE+R+ + AR +A
Sbjct: 383 RARQVYTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQA 429
Score = 59 (25.8 bits), Expect = 1.7e-65, Sum P(3) = 1.7e-65
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 312 KVWISYAKFEASALSKDGGNPDLSEA-DLCERKKQSIRGARRSHRKIYHQFATC 364
KVW+ A+FE L+ L +A +C + K RG R+++ +F C
Sbjct: 404 KVWLMKAQFEVRQLNLQAARKTLGQAIGMCPKDKL-FRGYIDLERQLF-EFVRC 455
Score = 37 (18.1 bits), Expect = 8.5e-11, Sum P(3) = 8.5e-11
Identities = 10/39 (25%), Positives = 13/39 (33%)
Query: 283 AYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFE 321
AYI EK + WI +A+FE
Sbjct: 178 AYIKLEKRYNEFERARAIFQRFTIVHPEPRNWIKWARFE 216
>POMBASE|SPBC31F10.11c [details] [associations]
symbol:cwf4 "complexed with Cdc5 protein Cwf4"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
Uniprot:P87312
Length = 674
Score = 516 (186.7 bits), Expect = 1.2e-67, Sum P(4) = 1.2e-67
Identities = 103/220 (46%), Positives = 139/220 (63%)
Query: 4 KNPRGAPIRKTAEQILRESQEH----FGEQKS--VDPTELYDYRLHKRNDFEDSIRRVPG 57
KN API+ +AEQ+LRE+ E F K D EL +++ KR +FED+IRR
Sbjct: 9 KNKNPAPIQISAEQLLREAVERQDVAFVPPKINITDLEELQEFQGRKRKEFEDAIRRNRL 68
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
W+ Y +WE Q EF RARS++E AL+ D LW KY E EM N+ INHARN++D
Sbjct: 69 AMGHWMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFD 128
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
RAV LP VD+LWYKY+ MEE+ GN+ R +F+RW+ W PD+ W+SYI+ E RY + E
Sbjct: 129 RAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEPDENCWMSYIRMERRYHENE 188
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVY 217
AR ++ER V HP V ++W+++A+FE G R VY
Sbjct: 189 RARGIYERFVVVHPEV-TNWLRWARFEEECGNAANVRQVY 227
Score = 206 (77.6 bits), Expect = 9.6e-23, Sum P(3) = 9.6e-23
Identities = 59/212 (27%), Positives = 100/212 (47%)
Query: 23 QEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMW 82
++ FG+ V+ T L D R R +E ++ P D W++ K E S + + R +
Sbjct: 287 EKQFGDHLGVESTVL-DKR---RLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETY 342
Query: 83 ELAL-------EEDC-RNHT-LWCKYAEFEMIN-KFINHARNVWDRAVAVLPHVD----Q 128
E A+ E++ R + +W Y FE I+ K ++ AR V+ A+ ++PH +
Sbjct: 343 EKAIAKVPEVVEKNAWRRYVYIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAK 402
Query: 129 LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQ 188
LW Y E + AR R + P + + YI+FE +Q + R ++E+ +
Sbjct: 403 LWLMYAMFELRQRKIDVARKTLGRALGMCPKPKLFRGYIEFEDAIKQFDRCRILYEKWIL 462
Query: 189 CHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
P + W+ YA E + G+ DRAR +Y A
Sbjct: 463 YDPEACAPWLGYAALETKLGDSDRARALYNLA 494
Score = 196 (74.1 bits), Expect = 6.7e-22, Sum P(4) = 6.7e-22
Identities = 52/158 (32%), Positives = 77/158 (48%)
Query: 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122
IN E Q R R +E A+ + W +Y ++E+ K AR+V++RA+ V
Sbjct: 40 INITDLEELQEFQGRKRKEFEDAIRRNRLAMGHWMRYGQWELDQKEFARARSVFERALDV 99
Query: 123 LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELARQ 181
LW KYI E N+ AR +FDR + P + W Y+ E + RQ
Sbjct: 100 DSTYIPLWLKYIECEMKNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQ 159
Query: 182 VFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
VFER ++ P+ + W+ Y + E R E +RAR +YER
Sbjct: 160 VFERWLKWEPDE-NCWMSYIRMERRYHENERARGIYER 196
Score = 179 (68.1 bits), Expect = 7.6e-20, Sum P(4) = 7.6e-20
Identities = 56/213 (26%), Positives = 96/213 (45%)
Query: 12 RKTAEQILRESQEHFGEQKSVDPTELYDYRLHK-RNDFEDSIRRVPGDTAVWINYAKWEG 70
RK E +R ++ G EL + R+ FE ++ +W+ Y + E
Sbjct: 56 RKEFEDAIRRNRLAMGHWMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIECEM 115
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLW 130
+ AR++++ A+ + R LW KY E + I R V++R + P + W
Sbjct: 116 KNRNINHARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEPD-ENCW 174
Query: 131 YKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCH 190
YIRME AR I++R++ P+ WL + +FE RQV+ +
Sbjct: 175 MSYIRMERRYHENERARGIYERFVVVHPEVTNWLRWARFEEECGNAANVRQVYLAAIDAL 234
Query: 191 PNVVSS---WIKYAKFEMRRGEIDRARNVYERA 220
+ +I +AKFE+R+ E +RAR +++ A
Sbjct: 235 GQEFLNERFFIAFAKFEIRQKEYERARTIFKYA 267
Score = 175 (66.7 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
Identities = 48/169 (28%), Positives = 83/169 (49%)
Query: 61 VWINYAKWEGSQ-NEFDRARSMWELALEE-DCRNHT---LWCKYAEFEMINKFINHARNV 115
+W+NY +E + DRAR +++ AL+ + T LW YA FE+ + I+ AR
Sbjct: 364 IWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVARKT 423
Query: 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA-WLSYIKFELRYE 174
RA+ + P +L+ YI E+ R+++++W+ + P+ A WL Y E +
Sbjct: 424 LGRALGMCPK-PKLFRGYIEFEDAIKQFDRCRILYEKWILYDPEACAPWLGYAALETKLG 482
Query: 175 QVELARQVFERLVQCH----PNVVSSWIKYAKFEMRRGEIDRARNVYER 219
+ AR ++ V P +V W Y FE E +AR++Y++
Sbjct: 483 DSDRARALYNLAVNQPILETPELV--WKAYIDFEFEEMEYGKARSIYQQ 529
Score = 161 (61.7 bits), Expect = 1.0e-17, Sum P(4) = 1.0e-17
Identities = 44/173 (25%), Positives = 79/173 (45%)
Query: 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEF 102
H RN F+ ++ ++P +W Y E R ++E L+ + + W Y
Sbjct: 122 HARNLFDRAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWE-PDENCWMSYIRM 180
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIF----DRWMHWTP 158
E AR +++R V V P V W ++ R EE GN A R ++ D
Sbjct: 181 ERRYHENERARGIYERFVVVHPEVTN-WLRWARFEEECGNAANVRQVYLAAIDALGQEFL 239
Query: 159 DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI--KYAKFEMRRGE 209
+++ ++++ KFE+R ++ E AR +F+ + P S + +Y FE + G+
Sbjct: 240 NERFFIAFAKFEIRQKEYERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGD 292
Score = 154 (59.3 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 46/175 (26%), Positives = 83/175 (47%)
Query: 45 RNDFEDSIRRVPGD----TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYA 100
R ++++++ +P +W+ YA +E Q + D AR AL C L+ Y
Sbjct: 383 RKVYQEALKLIPHKKFTFAKLWLMYAMFELRQRKIDVARKTLGRALGM-CPKPKLFRGYI 441
Query: 101 EFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW---- 156
EFE K + R ++++ + P W Y +E G+ AR +++ ++
Sbjct: 442 EFEDAIKQFDRCRILYEKWILYDPEACAPWLGYAALETKLGDSDRARALYNLAVNQPILE 501
Query: 157 TPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEID 211
TP+ W +YI FE + AR ++++L++ P+V WI +A FE+ E D
Sbjct: 502 TPEL-VWKAYIDFEFEEMEYGKARSIYQQLLRTAPHV-KVWISFANFEIAHLEDD 554
Score = 91 (37.1 bits), Expect = 1.2e-67, Sum P(4) = 1.2e-67
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 416 VQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEES--QKTNF-KILEAASKW----IK 468
V +++P+ +KKRR++ ++G +EEY+DYLFP+ + Q K+LE + KW K
Sbjct: 615 VSSLMPQVVKKRRRL--EDG---SFEEYLDYLFPDTATDQGDKMRKMLELSRKWKEEMAK 669
Query: 469 KKI 471
KK+
Sbjct: 670 KKL 672
Score = 83 (34.3 bits), Expect = 8.1e-05, Sum P(2) = 8.1e-05
Identities = 26/80 (32%), Positives = 39/80 (48%)
Query: 157 TPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEID----- 211
TP+ W +YI FE + AR ++++L++ P+V WI +A FE+ E D
Sbjct: 502 TPEL-VWKAYIDFEFEEMEYGKARSIYQQLLRTAPHV-KVWISFANFEIAHLEDDDEEPP 559
Query: 212 -----------RARNVYERA 220
RARNV+E A
Sbjct: 560 NEEVASPTAVVRARNVFENA 579
Score = 80 (33.2 bits), Expect = 1.2e-67, Sum P(4) = 1.2e-67
Identities = 19/55 (34%), Positives = 23/55 (41%)
Query: 282 KAYIHFEKSQGXXXXXXXXXXXXXXXTKHLKVWISYAKFEASALSKDGGNPDLSE 336
KAYI FE + H+KVWIS+A FE + L D P E
Sbjct: 508 KAYIDFEFEEMEYGKARSIYQQLLRTAPHVKVWISFANFEIAHLEDDDEEPPNEE 562
Score = 49 (22.3 bits), Expect = 2.0e-64, Sum P(4) = 2.0e-64
Identities = 18/56 (32%), Positives = 22/56 (39%)
Query: 312 KVWISYAKFEASALSKDGGNPDLSEA-DLCERKKQSIRGARRSHRKIYHQFATCLI 366
K+W+ YA FE D L A +C + K RG I QF C I
Sbjct: 402 KLWLMYAMFELRQRKIDVARKTLGRALGMCPKPKL-FRGYIEFEDAI-KQFDRCRI 455
Score = 40 (19.1 bits), Expect = 7.9e-55, Sum P(3) = 7.9e-55
Identities = 16/64 (25%), Positives = 27/64 (42%)
Query: 411 GDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDY-LFPEESQKT---NFKILEAASKW 466
GD+N ++ K + K ++ N +++Y LF E K K+ + A K
Sbjct: 333 GDINTIRETYEKAIAKVPEVVEKNAWRRYVYIWLNYCLFEEIDVKDVDRARKVYQEALKL 392
Query: 467 IKKK 470
I K
Sbjct: 393 IPHK 396
Score = 39 (18.8 bits), Expect = 1.2e-67, Sum P(4) = 1.2e-67
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 260 KEFGDWVLIEDAIVGKGKAPKDK 282
K+FGD + +E ++ K + +K
Sbjct: 288 KQFGDHLGVESTVLDKRRLQYEK 310
Score = 37 (18.1 bits), Expect = 3.2e-64, Sum P(4) = 3.2e-64
Identities = 7/11 (63%), Positives = 7/11 (63%)
Query: 282 KAYIHFEKSQG 292
K Y HFEK G
Sbjct: 281 KEYTHFEKQFG 291
>GENEDB_PFALCIPARUM|PFD0180c [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0000245 "spliceosomal complex assembly"
evidence=ISS] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386 GO:GO:0003723
GO:GO:0005622 Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245
KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 409 (149.0 bits), Expect = 5.1e-51, Sum P(3) = 5.1e-51
Identities = 87/221 (39%), Positives = 128/221 (57%)
Query: 4 KNPRGAPIRKTAEQILRESQE-----HFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGD 58
KN A ++ TAEQ++ E+ E H +D EL +YR++KR ++ED IR+
Sbjct: 11 KNKNAAEVQITAEQLINEALELEEVEHKVNYNLIDEEELNEYRINKRKEYEDKIRKRRYM 70
Query: 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDR 118
+ +I Y WE Q + +R RS++E AL D N LW KY E E+INK IN ARN+ +R
Sbjct: 71 ISTYIKYGLWEIKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLER 130
Query: 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVEL 178
V +LP + W KY +EEI N AR I++RW+ + D+ ++L YI FE R ++
Sbjct: 131 VVLLLPLENIFWKKYAHLEEILNNYVNARNIYERWIKFKIDESSFLCYIYFEERCNEINK 190
Query: 179 ARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
R++FERL+ P + + K+ KFE + I RAR YE+
Sbjct: 191 CREIFERLIVSIPKL-ECFYKFIKFEKKYKNIVRARAAYEK 230
Score = 187 (70.9 bits), Expect = 2.1e-20, Sum P(3) = 2.1e-20
Identities = 48/170 (28%), Positives = 91/170 (53%)
Query: 61 VWINYAKWEG--SQNEFDRARSMW----ELALEEDCRNHTLWCKYAEFEMINKFINHARN 114
+WINY+ +E +QN RAR ++ ++ + ++ YA FE+ +N AR+
Sbjct: 372 LWINYSIFEELYAQN-IQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARS 430
Query: 115 VWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-DQQAWLSYIKFELRY 173
+++ A+ +P+ ++++ K+ E GN+ R ++ +++ P + +AW+S I FEL
Sbjct: 431 IFNNALQTIPN-EKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMINFELSL 489
Query: 174 EQVELARQVFERLVQCH----PNVVSSWIKYAKFEMRRGEIDRARNVYER 219
++VE ARQ+ E + P ++ W Y E+ E D AR +Y+R
Sbjct: 490 DEVERARQIAEIAINLDDMKLPELI--WKNYIDMEINLQEYDNARKLYDR 537
Score = 176 (67.0 bits), Expect = 4.0e-19, Sum P(3) = 4.0e-19
Identities = 46/181 (25%), Positives = 90/181 (49%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE- 103
R+ FE ++ + +W+ Y + E + AR++ E + + W KYA E
Sbjct: 91 RSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPLENIFWKKYAHLEE 150
Query: 104 MINKFINHARNVWDRAVAVLPHVDQLWYK-YIRMEEIAGNVAAARLIFDRWMHWTPDQQA 162
++N ++N ARN+++R + +D+ + YI EE + R IF+R + P +
Sbjct: 151 ILNNYVN-ARNIYERWIKF--KIDESSFLCYIYFEERCNEINKCREIFERLIVSIPKLEC 207
Query: 163 WLSYIKFELRYEQVELARQVFERLVQCHPNVV---SSWIKYAKFEMRRGEIDRARNVYER 219
+ +IKFE +Y+ + AR +E+ ++ P+ + +I + FE + E +R + +Y
Sbjct: 208 FYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYERCKKIYIE 267
Query: 220 A 220
A
Sbjct: 268 A 268
Score = 147 (56.8 bits), Expect = 8.0e-16, Sum P(3) = 8.0e-16
Identities = 36/131 (27%), Positives = 66/131 (50%)
Query: 95 LWCKYAEFE-MINKFINHARNVWDRAVAVLPHVD----QLWYKYIRMEEIAGNVAAARLI 149
LW Y+ FE + + I AR+V++ + +L + +++ Y E NV AR I
Sbjct: 372 LWINYSIFEELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARSI 431
Query: 150 FDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209
F+ + P+++ + + +FEL+ + R V+ + V+ P +WI FE+ E
Sbjct: 432 FNNALQTIPNEKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMINFELSLDE 491
Query: 210 IDRARNVYERA 220
++RAR + E A
Sbjct: 492 VERARQIAEIA 502
Score = 143 (55.4 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 47/193 (24%), Positives = 89/193 (46%)
Query: 36 ELYDYRLHKRNDFEDSIRRVPGD-----TAVWINYAKWEGSQNEFDRARSMWELALEEDC 90
ELY + + D ++I ++ ++I YA +E Q ++ARS++ AL+
Sbjct: 381 ELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARSIFNNALQT-I 439
Query: 91 RNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIF 150
N ++ K+ EFE+ I RNV+ + V P + W I E V AR I
Sbjct: 440 PNEKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMINFELSLDEVERARQIA 499
Query: 151 DRWMHWTP---DQQAWLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSWIKYAKFEM 205
+ ++ + W +YI E+ ++ + AR++++RL+ H V S+ ++ +
Sbjct: 500 EIAINLDDMKLPELIWKNYIDMEINLQEYDNARKLYDRLLNITQHYKVYKSYAEFTYIYL 559
Query: 206 RRGEIDRARNVYE 218
+I+ R + E
Sbjct: 560 --DDIEMCRKILE 570
Score = 130 (50.8 bits), Expect = 5.1e-51, Sum P(3) = 5.1e-51
Identities = 36/121 (29%), Positives = 59/121 (48%)
Query: 354 HRKIYHQFATCLISSLSS----SGVFEKGINYYKTSAPXXXXXXXXXXXXXXNMERSFGE 409
H K+Y +A L + E+GI + K + ++E+ +G+
Sbjct: 544 HYKVYKSYAEFTYIYLDDIEMCRKILEEGIEFCKKNE--LINERCILLNFLCDIEKDYGD 601
Query: 410 LGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEE-SQKTNFKILEAASKWIK 468
++ LPKK+KKR+ I +++ EEYI Y+FP++ +Q N KILE A +W K
Sbjct: 602 KEIIDKTLKRLPKKVKKRKIIKNNDNDDEIIEEYITYVFPDDGNQSQNMKILEKALEWKK 661
Query: 469 K 469
K
Sbjct: 662 K 662
Score = 120 (47.3 bits), Expect = 6.8e-13, Sum P(3) = 6.8e-13
Identities = 51/213 (23%), Positives = 97/213 (45%)
Query: 13 KTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDF-EDSIRRVPGDTAVWINYAKWEGS 71
K ++L ++ F ++K + EL++ L K F ED +++ D +W NY K E S
Sbjct: 274 KNKSELLYKNFLQF-QKKYANKDELHESLLIKERIFYEDELKKNKNDYDIWFNYIKLEES 332
Query: 72 Q-NEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---D 127
N ++ + + + D Y I I+ ++ W R + + + +
Sbjct: 333 NINNINKEKCIIRI---RDL--------YERAISIIPIIS-SKKFWKRYIYLWINYSIFE 380
Query: 128 QLWYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERL 186
+L+ + I R ++ N+ ++ +T ++ ++ Y FELR V AR +F
Sbjct: 381 ELYAQNIQRARDVYNNIIKILSSYE----FT-FKKIFILYATFELRQLNVNKARSIFNNA 435
Query: 187 VQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
+Q PN + K+ +FE++ G I RNVY +
Sbjct: 436 LQTIPNE-KIFEKFCEFELKLGNIRECRNVYAK 467
Score = 82 (33.9 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 44/195 (22%), Positives = 89/195 (45%)
Query: 38 YDYRLHKRNDFEDSIRRVPG---DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHT 94
Y + R +E I +P D +I++ +E QNE++R + ++ AL+ +N +
Sbjct: 218 YKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYERCKKIYIEALKILPKNKS 277
Query: 95 --LWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDR 152
L+ + +F+ K+ N D L ++++Y+ +E+ N + +D
Sbjct: 278 ELLYKNFLQFQ--KKYANK-----DELHESLLIKERIFYE----DELKKN----KNDYDI 322
Query: 153 WMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS---------WIKYAKF 203
W ++ +++ ++ I E ++ R ++ER + P + S WI Y+ F
Sbjct: 323 WFNYIKLEESNINNINKEKCIIRI---RDLYERAISIIPIISSKKFWKRYIYLWINYSIF 379
Query: 204 E-MRRGEIDRARNVY 217
E + I RAR+VY
Sbjct: 380 EELYAQNIQRARDVY 394
Score = 77 (32.2 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 13/41 (31%), Positives = 30/41 (73%)
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
R+ +E ++ ++S++IKY +E+++ +I+R R+++ERA
Sbjct: 57 RKEYEDKIRKRRYMISTYIKYGLWEIKQKDIERCRSIFERA 97
Score = 43 (20.2 bits), Expect = 5.1e-51, Sum P(3) = 5.1e-51
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 308 TKHLKVWISYAKF 320
T+H KV+ SYA+F
Sbjct: 542 TQHYKVYKSYAEF 554
Score = 37 (18.1 bits), Expect = 2.2e-50, Sum P(3) = 2.2e-50
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +WI+Y+ FE
Sbjct: 368 RYIYLWINYSIFE 380
>UNIPROTKB|Q8I1Z2 [details] [associations]
symbol:PFD0180c "CGI-201 protein, short form" species:36329
"Plasmodium falciparum 3D7" [GO:0000245 "spliceosomal complex
assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
PROSITE:PS50293 SMART:SM00386 GO:GO:0003723 GO:GO:0005622
Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245 KO:K12869
HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
Length = 780
Score = 409 (149.0 bits), Expect = 5.1e-51, Sum P(3) = 5.1e-51
Identities = 87/221 (39%), Positives = 128/221 (57%)
Query: 4 KNPRGAPIRKTAEQILRESQE-----HFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGD 58
KN A ++ TAEQ++ E+ E H +D EL +YR++KR ++ED IR+
Sbjct: 11 KNKNAAEVQITAEQLINEALELEEVEHKVNYNLIDEEELNEYRINKRKEYEDKIRKRRYM 70
Query: 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDR 118
+ +I Y WE Q + +R RS++E AL D N LW KY E E+INK IN ARN+ +R
Sbjct: 71 ISTYIKYGLWEIKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLER 130
Query: 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVEL 178
V +LP + W KY +EEI N AR I++RW+ + D+ ++L YI FE R ++
Sbjct: 131 VVLLLPLENIFWKKYAHLEEILNNYVNARNIYERWIKFKIDESSFLCYIYFEERCNEINK 190
Query: 179 ARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
R++FERL+ P + + K+ KFE + I RAR YE+
Sbjct: 191 CREIFERLIVSIPKL-ECFYKFIKFEKKYKNIVRARAAYEK 230
Score = 187 (70.9 bits), Expect = 2.1e-20, Sum P(3) = 2.1e-20
Identities = 48/170 (28%), Positives = 91/170 (53%)
Query: 61 VWINYAKWEG--SQNEFDRARSMW----ELALEEDCRNHTLWCKYAEFEMINKFINHARN 114
+WINY+ +E +QN RAR ++ ++ + ++ YA FE+ +N AR+
Sbjct: 372 LWINYSIFEELYAQN-IQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARS 430
Query: 115 VWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-DQQAWLSYIKFELRY 173
+++ A+ +P+ ++++ K+ E GN+ R ++ +++ P + +AW+S I FEL
Sbjct: 431 IFNNALQTIPN-EKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMINFELSL 489
Query: 174 EQVELARQVFERLVQCH----PNVVSSWIKYAKFEMRRGEIDRARNVYER 219
++VE ARQ+ E + P ++ W Y E+ E D AR +Y+R
Sbjct: 490 DEVERARQIAEIAINLDDMKLPELI--WKNYIDMEINLQEYDNARKLYDR 537
Score = 176 (67.0 bits), Expect = 4.0e-19, Sum P(3) = 4.0e-19
Identities = 46/181 (25%), Positives = 90/181 (49%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE- 103
R+ FE ++ + +W+ Y + E + AR++ E + + W KYA E
Sbjct: 91 RSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLLLPLENIFWKKYAHLEE 150
Query: 104 MINKFINHARNVWDRAVAVLPHVDQLWYK-YIRMEEIAGNVAAARLIFDRWMHWTPDQQA 162
++N ++N ARN+++R + +D+ + YI EE + R IF+R + P +
Sbjct: 151 ILNNYVN-ARNIYERWIKF--KIDESSFLCYIYFEERCNEINKCREIFERLIVSIPKLEC 207
Query: 163 WLSYIKFELRYEQVELARQVFERLVQCHPNVV---SSWIKYAKFEMRRGEIDRARNVYER 219
+ +IKFE +Y+ + AR +E+ ++ P+ + +I + FE + E +R + +Y
Sbjct: 208 FYKFIKFEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYERCKKIYIE 267
Query: 220 A 220
A
Sbjct: 268 A 268
Score = 147 (56.8 bits), Expect = 8.0e-16, Sum P(3) = 8.0e-16
Identities = 36/131 (27%), Positives = 66/131 (50%)
Query: 95 LWCKYAEFE-MINKFINHARNVWDRAVAVLPHVD----QLWYKYIRMEEIAGNVAAARLI 149
LW Y+ FE + + I AR+V++ + +L + +++ Y E NV AR I
Sbjct: 372 LWINYSIFEELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARSI 431
Query: 150 FDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209
F+ + P+++ + + +FEL+ + R V+ + V+ P +WI FE+ E
Sbjct: 432 FNNALQTIPNEKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMINFELSLDE 491
Query: 210 IDRARNVYERA 220
++RAR + E A
Sbjct: 492 VERARQIAEIA 502
Score = 143 (55.4 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 47/193 (24%), Positives = 89/193 (46%)
Query: 36 ELYDYRLHKRNDFEDSIRRVPGD-----TAVWINYAKWEGSQNEFDRARSMWELALEEDC 90
ELY + + D ++I ++ ++I YA +E Q ++ARS++ AL+
Sbjct: 381 ELYAQNIQRARDVYNNIIKILSSYEFTFKKIFILYATFELRQLNVNKARSIFNNALQT-I 439
Query: 91 RNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIF 150
N ++ K+ EFE+ I RNV+ + V P + W I E V AR I
Sbjct: 440 PNEKIFEKFCEFELKLGNIRECRNVYAKYVEAFPFNSKAWISMINFELSLDEVERARQIA 499
Query: 151 DRWMHWTP---DQQAWLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSWIKYAKFEM 205
+ ++ + W +YI E+ ++ + AR++++RL+ H V S+ ++ +
Sbjct: 500 EIAINLDDMKLPELIWKNYIDMEINLQEYDNARKLYDRLLNITQHYKVYKSYAEFTYIYL 559
Query: 206 RRGEIDRARNVYE 218
+I+ R + E
Sbjct: 560 --DDIEMCRKILE 570
Score = 130 (50.8 bits), Expect = 5.1e-51, Sum P(3) = 5.1e-51
Identities = 36/121 (29%), Positives = 59/121 (48%)
Query: 354 HRKIYHQFATCLISSLSS----SGVFEKGINYYKTSAPXXXXXXXXXXXXXXNMERSFGE 409
H K+Y +A L + E+GI + K + ++E+ +G+
Sbjct: 544 HYKVYKSYAEFTYIYLDDIEMCRKILEEGIEFCKKNE--LINERCILLNFLCDIEKDYGD 601
Query: 410 LGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEE-SQKTNFKILEAASKWIK 468
++ LPKK+KKR+ I +++ EEYI Y+FP++ +Q N KILE A +W K
Sbjct: 602 KEIIDKTLKRLPKKVKKRKIIKNNDNDDEIIEEYITYVFPDDGNQSQNMKILEKALEWKK 661
Query: 469 K 469
K
Sbjct: 662 K 662
Score = 120 (47.3 bits), Expect = 6.8e-13, Sum P(3) = 6.8e-13
Identities = 51/213 (23%), Positives = 97/213 (45%)
Query: 13 KTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDF-EDSIRRVPGDTAVWINYAKWEGS 71
K ++L ++ F ++K + EL++ L K F ED +++ D +W NY K E S
Sbjct: 274 KNKSELLYKNFLQF-QKKYANKDELHESLLIKERIFYEDELKKNKNDYDIWFNYIKLEES 332
Query: 72 Q-NEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---D 127
N ++ + + + D Y I I+ ++ W R + + + +
Sbjct: 333 NINNINKEKCIIRI---RDL--------YERAISIIPIIS-SKKFWKRYIYLWINYSIFE 380
Query: 128 QLWYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERL 186
+L+ + I R ++ N+ ++ +T ++ ++ Y FELR V AR +F
Sbjct: 381 ELYAQNIQRARDVYNNIIKILSSYE----FT-FKKIFILYATFELRQLNVNKARSIFNNA 435
Query: 187 VQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
+Q PN + K+ +FE++ G I RNVY +
Sbjct: 436 LQTIPNE-KIFEKFCEFELKLGNIRECRNVYAK 467
Score = 82 (33.9 bits), Expect = 4.7e-09, Sum P(3) = 4.7e-09
Identities = 44/195 (22%), Positives = 89/195 (45%)
Query: 38 YDYRLHKRNDFEDSIRRVPG---DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHT 94
Y + R +E I +P D +I++ +E QNE++R + ++ AL+ +N +
Sbjct: 218 YKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNEYERCKKIYIEALKILPKNKS 277
Query: 95 --LWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDR 152
L+ + +F+ K+ N D L ++++Y+ +E+ N + +D
Sbjct: 278 ELLYKNFLQFQ--KKYANK-----DELHESLLIKERIFYE----DELKKN----KNDYDI 322
Query: 153 WMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS---------WIKYAKF 203
W ++ +++ ++ I E ++ R ++ER + P + S WI Y+ F
Sbjct: 323 WFNYIKLEESNINNINKEKCIIRI---RDLYERAISIIPIISSKKFWKRYIYLWINYSIF 379
Query: 204 E-MRRGEIDRARNVY 217
E + I RAR+VY
Sbjct: 380 EELYAQNIQRARDVY 394
Score = 77 (32.2 bits), Expect = 1.5e-08, Sum P(3) = 1.5e-08
Identities = 13/41 (31%), Positives = 30/41 (73%)
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
R+ +E ++ ++S++IKY +E+++ +I+R R+++ERA
Sbjct: 57 RKEYEDKIRKRRYMISTYIKYGLWEIKQKDIERCRSIFERA 97
Score = 43 (20.2 bits), Expect = 5.1e-51, Sum P(3) = 5.1e-51
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 308 TKHLKVWISYAKF 320
T+H KV+ SYA+F
Sbjct: 542 TQHYKVYKSYAEF 554
Score = 37 (18.1 bits), Expect = 2.2e-50, Sum P(3) = 2.2e-50
Identities = 5/13 (38%), Positives = 11/13 (84%)
Query: 309 KHLKVWISYAKFE 321
+++ +WI+Y+ FE
Sbjct: 368 RYIYLWINYSIFE 380
>CGD|CAL0004743 [details] [associations]
symbol:orf19.332 species:5476 "Candida albicans" [GO:0071007
"U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IEA] [GO:0071006 "U2-type
catalytic step 1 spliceosome" evidence=IEA] [GO:0071008 "U2-type
post-mRNA release spliceosomal complex" evidence=IEA] [GO:0000785
"chromatin" evidence=IEA] [GO:0000974 "Prp19 complex" evidence=IEA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
Pfam:PF05843 SMART:SM00386 GO:GO:0008380 GO:GO:0006397
GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 EMBL:AACQ01000027
EMBL:AACQ01000026 RefSeq:XP_720027.1 RefSeq:XP_720159.1
ProteinModelPortal:Q5AED6 STRING:Q5AED6 GeneID:3638214
GeneID:3638364 KEGG:cal:CaO19.332 KEGG:cal:CaO19.7964
eggNOG:NOG327505 KO:K12869 Uniprot:Q5AED6
Length = 758
Score = 397 (144.8 bits), Expect = 9.9e-46, Sum P(3) = 9.9e-46
Identities = 76/191 (39%), Positives = 114/191 (59%)
Query: 33 DPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQN-EFDRARSMWELALEEDCR 91
D EL Y+ KR +FE I + + W YAKWE N +F RARS+ E AL+ + +
Sbjct: 94 DTEELQSYQQTKRKEFEQHINKNRLNLGQWTRYAKWEIENNHDFPRARSILERALDVNIQ 153
Query: 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFD 151
+ W +Y + E+ +K INHARN+ +RA+ LP V++LW+ Y++ EE+ N R +F+
Sbjct: 154 HVPFWIQYIQLELSHKNINHARNLMERAINTLPRVNKLWFLYVQTEEMLKNYPMVRAVFE 213
Query: 152 RWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR--RGE 209
RW+ W PD W +YI FE RYE+ E R +F++ V PN +W K+ K+EM R +
Sbjct: 214 RWLDWHPDTSVWDAYINFEARYEEKENVRTIFKKYVHEFPNA-GTWYKWIKYEMENNRDD 272
Query: 210 IDRARNVYERA 220
++ R V+E A
Sbjct: 273 VNTVRAVFESA 283
Score = 115 (45.5 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 53/225 (23%), Positives = 91/225 (40%)
Query: 21 ESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKW-EGSQNEFDRAR 79
E +++FG + S++ + L + +R +E I+ P D W Y + S N+ D
Sbjct: 352 EFEKNFGNKDSIEQSVL----IKRRIKYEQEIQNDPYDYDSWWKYMTLLQNSSNKSDLEN 407
Query: 80 SMWELA--LEEDCRNHTLWCKYAEF--------EMINKFINHARNVWDRAVAVLPHVD-- 127
+ ++ + D W +Y F EM N + AR +W+ + V+PH
Sbjct: 408 AFKKVTGNVVHDKHKSIKWRRYIMFWIWYAFWEEMTNNNPDSAREIWNNCLKVIPHKSFT 467
Query: 128 --QLWYKYIRME--EIAGNVAAARLIFDRWMHWT----PDQQAWLSYIKFELRYEQVELA 179
++W Y E +A AR I R + T P + + YI E +
Sbjct: 468 FAKVWIGYSEFELRNSEDGLAKARKILGRAIGQTSINKPKIKIFKYYIDLEKKLGDWNRV 527
Query: 180 RQVFERLVQCHPNVVSSWI----KYAKFEMRRGEIDRARNVYERA 220
R +F++ ++ SS KY +FE E DR ++ A
Sbjct: 528 RLLFQKWLEVSLLTTSSSELVIEKYVEFESSIEEYDRCDSILSSA 572
Score = 86 (35.3 bits), Expect = 9.9e-46, Sum P(3) = 9.9e-46
Identities = 30/104 (28%), Positives = 47/104 (45%)
Query: 370 SSSGVFEKGINYYKTSAPXXXXXXXXXXXXXXNMERSFGELGDVNLVQAMLPKKLKKRRQ 429
S+ +FE+ + Y+K + E G ++ V LP ++KRR
Sbjct: 662 STRNIFEEAMTYFKDK--DDKESRLVIIEAWRDFEEVNGSDESLSKVTKRLPVIVRKRRT 719
Query: 430 IASDNGLSAGYEEYIDYLFPE-ESQKTNFKI---LEAASKWIKK 469
+ S EEYIDY+FP+ ES+K K+ L A KW ++
Sbjct: 720 VGSIE------EEYIDYIFPDDESKKLPGKMSKFLANAKKWAQQ 757
Score = 48 (22.0 bits), Expect = 9.9e-46, Sum P(3) = 9.9e-46
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 312 KVWISYAKFEASALSKDG 329
KVWI Y++FE S+DG
Sbjct: 470 KVWIGYSEFELRN-SEDG 486
Score = 41 (19.5 bits), Expect = 5.3e-45, Sum P(3) = 5.3e-45
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 314 WISYAKFEASALSKD 328
WIS+A FE+S S +
Sbjct: 624 WISFALFESSIPSAE 638
>SGD|S000004107 [details] [associations]
symbol:CLF1 "Member of the NineTeen Complex (NTC)"
species:4932 "Saccharomyces cerevisiae" [GO:0000785 "chromatin"
evidence=IDA] [GO:0000384 "first spliceosomal transesterification
activity" evidence=IC] [GO:0071007 "U2-type catalytic step 2
spliceosome" evidence=IDA] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0071008 "U2-type post-mRNA release spliceosomal
complex" evidence=IDA] [GO:0000974 "Prp19 complex" evidence=IDA]
[GO:0071006 "U2-type catalytic step 1 spliceosome" evidence=IDA]
[GO:0000354 "cis assembly of pre-catalytic spliceosome"
evidence=IMP;IPI] [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0006270 "DNA
replication initiation" evidence=IMP;IPI] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003688 "DNA replication
origin binding" evidence=IDA] [GO:0000386 "second spliceosomal
transesterification activity" evidence=IC] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
SGD:S000004107 GO:GO:0000785 GO:GO:0003682 EMBL:BK006945
GO:GO:0003688 GO:GO:0007049 GO:GO:0006270 Gene3D:1.25.40.10
EMBL:X89514 EMBL:U53877 GO:GO:0000974 GO:GO:0071006
eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
OrthoDB:EOG4NKG44 EMBL:Z73289 PIR:S64954 RefSeq:NP_013218.1
ProteinModelPortal:Q12309 SMR:Q12309 DIP:DIP-1685N IntAct:Q12309
MINT:MINT-385873 STRING:Q12309 PaxDb:Q12309 PRIDE:Q12309
EnsemblFungi:YLR117C GeneID:850808 KEGG:sce:YLR117C CYGD:YLR117c
GeneTree:ENSGT00550000074931 NextBio:967040 Genevestigator:Q12309
GermOnline:YLR117C GO:GO:0071007 GO:GO:0071008 GO:GO:0071004
GO:GO:0000354 Uniprot:Q12309
Length = 687
Score = 386 (140.9 bits), Expect = 5.8e-45, Sum P(3) = 5.8e-45
Identities = 81/221 (36%), Positives = 125/221 (56%)
Query: 6 PRGAPIRKTAEQILRE----SQEHFGEQKS--VDPTELYDYRLHKRNDFEDSIRRVPGDT 59
P +AEQILR+ Q+ G +D EL +Y+ KR ++E ++R D
Sbjct: 6 PTAVDTHVSAEQILRDVYKKGQKARGSTNIDILDLEELREYQRRKRTEYEGYLKRNRLDM 65
Query: 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRA 119
WI YA++E Q++ RARS++E AL D LW +Y + E+ K INHARN+ +RA
Sbjct: 66 GQWIRYAQFEIEQHDMRRARSIFERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRA 125
Query: 120 VAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELA 179
++ LP VD+LWYKY+ +EE NV R ++ +W P AW S++ FE+R +
Sbjct: 126 ISTLPRVDKLWYKYLIVEESLNNVEIVRSLYTKWCSLEPGVNAWNSFVDFEIRQKNWNGV 185
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
R+++ + V HP + +W+K+ +FE R G + R+VY A
Sbjct: 186 REIYSKYVMAHPQM-QTWLKWVRFENRHGNTEFTRSVYSLA 225
Score = 139 (54.0 bits), Expect = 3.6e-11, Sum P(3) = 3.6e-11
Identities = 45/189 (23%), Positives = 81/189 (42%)
Query: 36 ELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTL 95
E +D R R+ FE ++ +WI Y E + AR++ A+ R L
Sbjct: 77 EQHDMR-RARSIFERALLVDSSFIPLWIRYIDAELKVKCINHARNLMNRAISTLPRVDKL 135
Query: 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMH 155
W KY E + R+++ + ++ P V+ W ++ E N R I+ +++
Sbjct: 136 WYKYLIVEESLNNVEIVRSLYTKWCSLEPGVNA-WNSFVDFEIRQKNWNGVREIYSKYVM 194
Query: 156 WTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNV--VSSW--IKYAKFEMRRGEID 211
P Q WL +++FE R+ E R V+ + N+ + W ++ AK +
Sbjct: 195 AHPQMQTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQNLQIWSDMEVAKLVNSFAHWE 254
Query: 212 RARNVYERA 220
A+ YER+
Sbjct: 255 AAQQEYERS 263
Score = 136 (52.9 bits), Expect = 1.2e-10, Sum P(2) = 1.2e-10
Identities = 30/131 (22%), Positives = 64/131 (48%)
Query: 95 LWCKY---AEFEMINKFINHARNVWDRAVA-VLPH----VDQLWYKYIRMEEIAGNVAAA 146
LW +Y E E+ N + ++ R + ++PH ++W Y + +V A
Sbjct: 366 LWMRYICYVELELENSLLEE--ELFQRLIDDIIPHKHFTFSKIWLMYAKFLIRHDDVPKA 423
Query: 147 RLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR 206
R I + + P + + YI+ E++ ++ + R+++E+ ++ P+ + W +Y + E
Sbjct: 424 RKILGKAIGLCPKAKTFKGYIELEVKLKEFDRVRKIYEKFIEFQPSDLQIWSQYGELEEN 483
Query: 207 RGEIDRARNVY 217
G+ DR R +Y
Sbjct: 484 LGDWDRVRGIY 494
Score = 125 (49.1 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 36/151 (23%), Positives = 73/151 (48%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ YAK+ ++ +AR + A+ C + Y E E+ K + R ++++ +
Sbjct: 406 IWLMYAKFLIRHDDVPKARKILGKAIGL-CPKAKTFKGYIELEVKLKEFDRVRKIYEKFI 464
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD---QQAWL----SYIKFELRY 173
P Q+W +Y +EE G+ R I+ + D ++A + YI FE
Sbjct: 465 EFQPSDLQIWSQYGELEENLGDWDRVRGIYTIALDENSDFLTKEAKIVLLQKYITFETES 524
Query: 174 EQVELARQVFERLVQCHPNVVSSWIKYAKFE 204
++ E AR+++ R ++ + SWI++A ++
Sbjct: 525 QEFEKARKLYRRYLELNQYSPQSWIEFAMYQ 555
Score = 101 (40.6 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 37/149 (24%), Positives = 65/149 (43%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHT------LWCK 98
R +E I P D +W Y + E + ++DR R ++ +AL+E+ T L K
Sbjct: 457 RKIYEKFIEFQPSDLQIWSQYGELEENLGDWDRVRGIYTIALDENSDFLTKEAKIVLLQK 516
Query: 99 YAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP 158
Y FE ++ AR ++ R + + + Q W ++ M + + L +
Sbjct: 517 YITFETESQEFEKARKLYRRYLELNQYSPQSWIEFA-MYQTSTPTEQQLLDLAKLQSENV 575
Query: 159 DQQAWLSYIKFELRYEQVELARQVFERLV 187
D+ I+FE+ E AR+VFE +
Sbjct: 576 DED-----IEFEITDENKLEARKVFEEAI 599
Score = 100 (40.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 28/99 (28%), Positives = 48/99 (48%)
Query: 129 LWYKYIRMEEIA-GNVAAARLIFDRWM-------HWTPDQQAWLSYIKFELRYEQVELAR 180
LW +YI E+ N +F R + H+T + WL Y KF +R++ V AR
Sbjct: 366 LWMRYICYVELELENSLLEEELFQRLIDDIIPHKHFT-FSKIWLMYAKFLIRHDDVPKAR 424
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
++ + + P ++ Y + E++ E DR R +YE+
Sbjct: 425 KILGKAIGLCPKA-KTFKGYIELEVKLKEFDRVRKIYEK 462
Score = 98 (39.6 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 29/132 (21%), Positives = 59/132 (44%)
Query: 95 LWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM 154
+W YA+F + + + AR + +A+ + P + + YI +E R I+++++
Sbjct: 406 IWLMYAKFLIRHDDVPKARKILGKAIGLCPKA-KTFKGYIELEVKLKEFDRVRKIYEKFI 464
Query: 155 HWTP-DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK------YAKFEMRR 207
+ P D Q W Y + E + R ++ + + + ++ K Y FE
Sbjct: 465 EFQPSDLQIWSQYGELEENLGDWDRVRGIYTIALDENSDFLTKEAKIVLLQKYITFETES 524
Query: 208 GEIDRARNVYER 219
E ++AR +Y R
Sbjct: 525 QEFEKARKLYRR 536
Score = 92 (37.4 bits), Expect = 5.8e-45, Sum P(3) = 5.8e-45
Identities = 29/103 (28%), Positives = 46/103 (44%)
Query: 367 SSLSSSGVFEKGINYYKTSAPXXXXXXXXXXXXXXNMERSFGELGDVNLVQAMLPKKLKK 426
+ L + VFE+ I ++K + E ++G D V+ PK +KK
Sbjct: 587 NKLEARKVFEEAIVFFKEK--DDKQGRLSILEALKDYEETYGTELDQETVKKRFPKVIKK 644
Query: 427 RRQIASDNGLSAGYEEYIDYLFPEE---SQKTNFKILEAASKW 466
R NG+ EE++DY+FP++ + K LE A KW
Sbjct: 645 VRL---QNGVE---EEFVDYIFPDDIDDDKPKPSKFLELAKKW 681
Score = 88 (36.0 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 154 MHWTPDQQAWLSYIKF-ELRYEQVELARQVFERLVQC---HPNVVSS--WIKYAKFEMRR 207
+ W W+ YI + EL E L ++F+RL+ H + S W+ YAKF +R
Sbjct: 358 VQWKRYIYLWMRYICYVELELENSLLEEELFQRLIDDIIPHKHFTFSKIWLMYAKFLIRH 417
Query: 208 GEIDRARNVYERA 220
++ +AR + +A
Sbjct: 418 DDVPKARKILGKA 430
Score = 74 (31.1 bits), Expect = 0.00032, Sum P(3) = 0.00032
Identities = 30/143 (20%), Positives = 63/143 (44%)
Query: 58 DTAVWIN-YAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM-------INKFI 109
+ A +N +A WE +Q E++R+ +++++A+E+ N L +FE I + I
Sbjct: 242 EVAKLVNSFAHWEAAQQEYERSSALYQIAIEKWPSNQLLKAGLLDFEKQFGDINSIEETI 301
Query: 110 NHARNV-WDRAVAVLPHVDQLWYKYIRM--EEIAGNVAAA--RLIFDRWMHWTPDQQAWL 164
++ R + ++ ++ + W+ Y+ + E + + I D W
Sbjct: 302 SYKRKMEYETILSNNAYDYDTWWLYLDLISESFPKQIMQTFEKAIVDSRPKELSKNVQWK 361
Query: 165 SYIKFELRY---EQVELARQVFE 184
YI +RY ++EL + E
Sbjct: 362 RYIYLWMRYICYVELELENSLLE 384
Score = 42 (19.8 bits), Expect = 5.8e-45, Sum P(3) = 5.8e-45
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 312 KVWISYAKF 320
K+W+ YAKF
Sbjct: 405 KIWLMYAKF 413
>UNIPROTKB|F1N9U0 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IEA] [GO:0006403 "RNA localization" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0050681 "androgen receptor
binding" evidence=IEA] [GO:0071001 "U4/U6 snRNP" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
GO:GO:0045944 GO:GO:0005682 GO:GO:0003723 GO:GO:0003713
Gene3D:1.25.40.10 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 GO:GO:0006403 GO:GO:0071001 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 EMBL:AADN02019178 EMBL:AADN02019179
EMBL:AADN02019180 IPI:IPI00589966 Ensembl:ENSGALT00000009656
Uniprot:F1N9U0
Length = 945
Score = 169 (64.5 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 52/213 (24%), Positives = 103/213 (48%)
Query: 15 AEQILRESQEHFGEQKSVDPTELYDYRLH-KRNDFEDSIRRV----PGDTAVWINYAKWE 69
A I + + F +KSV Y + H R E ++R P +W+ AK +
Sbjct: 563 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 622
Query: 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129
+ ARS+ LA + + + +W + E N AR + +A + P ++
Sbjct: 623 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTA-RV 681
Query: 130 WYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSYIKFELRYEQVELARQVFER-LV 187
+ K +++E + GN+AAA+ + + + H+ + W+ + E + E VE AR+ + + L
Sbjct: 682 FMKSVKLEWVLGNIAAAQELCEEALRHYEDFPKLWMMKGQIEEQKELVERAREAYNQGLK 741
Query: 188 QCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+C P+ + W+ ++ E + G++ RAR + E++
Sbjct: 742 KC-PHSIPLWLLLSRLEEKVGQLTRARAILEKS 773
Score = 134 (52.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 42/160 (26%), Positives = 72/160 (45%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121
W+ A + N + AR+++ AL+ ++W + A FE + + RAVA
Sbjct: 547 WMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVA 606
Query: 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELAR 180
P + LW + + +AG+V AAR I P+ ++ WL+ +K E + E AR
Sbjct: 607 HCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERAR 666
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++ + P ++K K E G I A+ + E A
Sbjct: 667 RLLAKARSSAPTA-RVFMKSVKLEWVLGNIAAAQELCEEA 705
>ZFIN|ZDB-GENE-030131-2575 [details] [associations]
symbol:prpf6 "PRP6 pre-mRNA processing factor 6
homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-030131-2575 GO:GO:0005634 Gene3D:1.25.40.10
GO:GO:0000398 KO:K12855 InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 HOVERGEN:HBG023330 EMBL:BC056710 IPI:IPI00484708
RefSeq:NP_997820.1 UniGene:Dr.150395 ProteinModelPortal:Q6PH55
STRING:Q6PH55 GeneID:323855 KEGG:dre:323855 InParanoid:Q6PH55
NextBio:20808461 ArrayExpress:Q6PH55 Bgee:Q6PH55 Uniprot:Q6PH55
Length = 944
Score = 166 (63.5 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 42/172 (24%), Positives = 86/172 (50%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
++ P +W+ AK + + ARS+ LA + + + +W + E N
Sbjct: 603 AVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYE 662
Query: 111 HARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAAR-LIFDRWMHWTPDQQAWLSYIKF 169
AR + +A + P +++ K +R+E + GN+ AA L + H+ + W+ +
Sbjct: 663 RARRLLAKARSSAPTA-RVFMKSVRLEWVLGNIEAAHELCTEALKHYEDFPKLWMMRGQI 721
Query: 170 ELRYEQVELARQVFER-LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
E + E ++ AR+ + + L +C P+ +S W+ ++ E + G++ RAR + E+A
Sbjct: 722 EEQSESIDRAREAYNQGLKKC-PHSMSLWLLLSRLEEKVGQLTRARAILEKA 772
Score = 128 (50.1 bits), Expect = 0.00011, P = 0.00011
Identities = 41/160 (25%), Positives = 70/160 (43%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121
W+ A S + AR+++ AL+ ++W + A FE N + RAVA
Sbjct: 546 WMEDADSCVSHGALECARAIYAHALQVFPSKKSVWLRAAYFEKNNGTRESLEALLQRAVA 605
Query: 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELAR 180
P + LW + + +AG+V AAR I P+ ++ WL+ +K E + E AR
Sbjct: 606 HCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERAR 665
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++ + P ++K + E G I+ A + A
Sbjct: 666 RLLAKARSSAPTA-RVFMKSVRLEWVLGNIEAAHELCTEA 704
Score = 120 (47.3 bits), Expect = 0.00084, P = 0.00084
Identities = 36/166 (21%), Positives = 69/166 (41%)
Query: 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNV 115
P +W+ K E NE++RAR + A ++ K E + I A +
Sbjct: 642 PNSEEIWLAAVKLESENNEYERARRLLAKA-RSSAPTARVFMKSVRLEWVLGNIEAAHEL 700
Query: 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA-WLSYIKFELRYE 174
A+ +LW ++EE + ++ AR +++ + P + WL + E +
Sbjct: 701 CTEALKHYEDFPKLWMMRGQIEEQSESIDRAREAYNQGLKKCPHSMSLWLLLSRLEEKVG 760
Query: 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
Q+ AR + E+ +P W++ + E R G + A + +A
Sbjct: 761 QLTRARAILEKARLKNPQSPELWLESVRLEYRAGLKNIANTLMAKA 806
Score = 120 (47.3 bits), Expect = 0.00084, P = 0.00084
Identities = 36/175 (20%), Positives = 76/175 (43%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R + +++ P ++W+ ++ E + RAR++ E A ++ ++ LW + E
Sbjct: 732 REAYNQGLKKCPHSMSLWLLLSRLEEKVGQLTRARAILEKARLKNPQSPELWLESVRLEY 791
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
N A + +A+ P+ LW + + +E + + H D L
Sbjct: 792 RAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEH---DPHVLL 848
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
+ K ++ AR+ F R V+ P++ +W + KFE++ G ++ V +R
Sbjct: 849 AVAKLFWSERKITKAREWFLRTVKIEPDLGDAWGFFYKFELQHGTEEQQHEVKKR 903
>UNIPROTKB|E2RPW8 [details] [associations]
symbol:PRPF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 Pfam:PF13181 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 Gene3D:1.25.40.10 GO:GO:0000398
KO:K12855 OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
CTD:24148 GeneTree:ENSGT00550000075016 EMBL:AAEX03014173
EMBL:AAEX03014174 RefSeq:XP_534481.3 Ensembl:ENSCAFT00000020914
GeneID:477289 KEGG:cfa:477289 Uniprot:E2RPW8
Length = 941
Score = 163 (62.4 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 51/213 (23%), Positives = 102/213 (47%)
Query: 15 AEQILRESQEHFGEQKSVDPTELYDYRLH-KRNDFEDSIRRV----PGDTAVWINYAKWE 69
A I + + F +KSV Y + H R E ++R P +W+ AK +
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 618
Query: 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129
+ ARS+ LA + + + +W + E N AR + +A + P ++
Sbjct: 619 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTA-RV 677
Query: 130 WYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSYIKFELRYEQVELARQVFER-LV 187
+ K +++E + GN+AAA+ + + + H+ + W+ + E + E +E AR+ + + L
Sbjct: 678 FMKSVKLEWVLGNIAAAQELCEEALRHYEDFPKLWMMKGQIEEQEELMERAREAYNQGLK 737
Query: 188 QCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+C P+ W+ ++ E + G++ RAR + E++
Sbjct: 738 KC-PHSTPLWLLLSRLEEKVGQLTRARAILEKS 769
Score = 134 (52.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 42/160 (26%), Positives = 72/160 (45%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121
W+ A + N + AR+++ AL+ ++W + A FE + + RAVA
Sbjct: 543 WMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVA 602
Query: 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELAR 180
P + LW + + +AG+V AAR I P+ ++ WL+ +K E + E AR
Sbjct: 603 HCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERAR 662
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++ + P ++K K E G I A+ + E A
Sbjct: 663 RLLAKARSSAPTA-RVFMKSVKLEWVLGNIAAAQELCEEA 701
Score = 124 (48.7 bits), Expect = 0.00030, P = 0.00030
Identities = 37/175 (21%), Positives = 74/175 (42%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R + +++ P T +W+ ++ E + RAR++ E + ++ +N LW + E
Sbjct: 729 REAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRLEY 788
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
N A + +A+ P+ LW + I +E + + H D L
Sbjct: 789 RAGLKNIANTLMAKALQECPNSGVLWSEAIFLEARPQRKTKSVDALKKCEH---DPHVLL 845
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
+ K ++ AR+ F R V+ ++ +W + KFE++ G ++ V R
Sbjct: 846 AVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQREEVRRR 900
>UNIPROTKB|Q2KJJ0 [details] [associations]
symbol:PRPF6 "Pre-mRNA-processing factor 6" species:9913
"Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0071001 "U4/U6
snRNP" evidence=IEA] [GO:0050681 "androgen receptor binding"
evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=IEA] [GO:0006403 "RNA
localization" evidence=IEA] [GO:0005682 "U5 snRNP" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
EMBL:AAFC03042419 EMBL:BC105318 IPI:IPI00702400
RefSeq:NP_001039840.1 UniGene:Bt.40556 ProteinModelPortal:Q2KJJ0
STRING:Q2KJJ0 Ensembl:ENSBTAT00000015480 GeneID:534228
KEGG:bta:534228 CTD:24148 GeneTree:ENSGT00550000075016
HOVERGEN:HBG023330 InParanoid:Q2KJJ0 OrthoDB:EOG4FTVZW
NextBio:20876316 ArrayExpress:Q2KJJ0 Uniprot:Q2KJJ0
Length = 941
Score = 161 (61.7 bits), Expect = 2.7e-08, P = 2.7e-08
Identities = 53/213 (24%), Positives = 99/213 (46%)
Query: 15 AEQILRESQEHFGEQKSVDPTELYDYRLH-KRNDFEDSIRRV----PGDTAVWINYAKWE 69
A I + + F +KSV Y + H R E ++R P +W+ AK +
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 618
Query: 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129
+ ARS+ LA + + + +W + E N AR + +A + P ++
Sbjct: 619 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTA-RV 677
Query: 130 WYKYIRMEEIAGN-VAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFER-LV 187
+ K +++E + GN VAA L + H+ + W+ + E + E VE AR+ + + L
Sbjct: 678 FMKSVKLEWVLGNLVAAQELCEEALKHYEDFPKLWMMKGQIEEQEELVEKAREAYNQGLK 737
Query: 188 QCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+C P+ W+ ++ E + G++ RAR + E++
Sbjct: 738 KC-PHSTPLWLLLSRLEEKVGQLTRARAILEKS 769
Score = 131 (51.2 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 41/160 (25%), Positives = 72/160 (45%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121
W+ A + N + AR+++ AL+ ++W + A FE + + RAVA
Sbjct: 543 WMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVA 602
Query: 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELAR 180
P + LW + + +AG+V AAR I P+ ++ WL+ +K E + E AR
Sbjct: 603 HCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERAR 662
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++ + P ++K K E G + A+ + E A
Sbjct: 663 RLLAKARSSAPTA-RVFMKSVKLEWVLGNLVAAQELCEEA 701
Score = 123 (48.4 bits), Expect = 0.00039, P = 0.00039
Identities = 37/175 (21%), Positives = 74/175 (42%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R + +++ P T +W+ ++ E + RAR++ E + ++ +N LW + E
Sbjct: 729 REAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRLEY 788
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
N A + +A+ P+ LW + I +E + + H D L
Sbjct: 789 RAGLKNIASTLMAKALQECPNSGVLWSEAIFLEARPQRKTKSVDALKKCEH---DPHVLL 845
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
+ K ++ AR+ F R V+ ++ +W + KFE++ G ++ V R
Sbjct: 846 AVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQREEVRRR 900
>MGI|MGI:1922946 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA splicing factor 6 homolog
(yeast)" species:10090 "Mus musculus" [GO:0000244 "assembly of
spliceosomal tri-snRNP" evidence=ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005682 "U5 snRNP" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006403 "RNA localization" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0071001 "U4/U6 snRNP" evidence=ISO] [GO:0071013 "catalytic step
2 spliceosome" evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 Pfam:PF13181 SMART:SM00386 MGI:MGI:1922946
GO:GO:0005634 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0050681 GO:GO:0043021 GO:GO:0000398 GO:GO:0071013
GO:GO:0046540 EMBL:CH466626 GO:GO:0006403 ChiTaRS:PRPF6
GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 EMBL:BC005801
EMBL:BC014869 EMBL:BC023691 EMBL:BC025030 EMBL:AK011639
EMBL:AK145461 EMBL:AK081998 EMBL:AL844529 IPI:IPI00130409
IPI:IPI00229813 RefSeq:NP_598462.1 UniGene:Mm.292001
ProteinModelPortal:Q91YR7 SMR:Q91YR7 STRING:Q91YR7
PhosphoSite:Q91YR7 PaxDb:Q91YR7 PRIDE:Q91YR7
Ensembl:ENSMUST00000002529 Ensembl:ENSMUST00000136481 GeneID:68879
KEGG:mmu:68879 UCSC:uc008omy.1 InParanoid:Q3ULJ7 NextBio:328105
Bgee:Q91YR7 CleanEx:MM_PRPF6 Genevestigator:Q91YR7
GermOnline:ENSMUSG00000002455 Uniprot:Q91YR7
Length = 941
Score = 159 (61.0 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 50/213 (23%), Positives = 102/213 (47%)
Query: 15 AEQILRESQEHFGEQKSVDPTELYDYRLH-KRNDFEDSIRRV----PGDTAVWINYAKWE 69
A I + + F +KSV Y + H R E ++R P +W+ AK +
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 618
Query: 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129
+ ARS+ LA + + + +W + E N AR + +A + P ++
Sbjct: 619 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTA-RV 677
Query: 130 WYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSYIKFELRYEQVELARQVFER-LV 187
+ K +++E + GN++AA+ + + + H+ + W+ + E + E +E AR+ + + L
Sbjct: 678 FMKSVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMEKAREAYNQGLK 737
Query: 188 QCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+C P+ W+ ++ E + G++ RAR + E++
Sbjct: 738 KC-PHSTPLWLLLSRLEEKIGQLTRARAILEKS 769
Score = 136 (52.9 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 42/160 (26%), Positives = 72/160 (45%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121
W+ A + N + AR+++ AL+ ++W + A FE + + RAVA
Sbjct: 543 WMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVA 602
Query: 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELAR 180
P + LW + + +AG+V AAR I P+ ++ WL+ +K E + E AR
Sbjct: 603 HCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERAR 662
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++ + P ++K K E G I A+ + E A
Sbjct: 663 RLLAKARSSAPTA-RVFMKSVKLEWVLGNISAAQELCEEA 701
Score = 122 (48.0 bits), Expect = 0.00050, P = 0.00050
Identities = 36/175 (20%), Positives = 75/175 (42%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R + +++ P T +W+ ++ E + RAR++ E + ++ +N LW + E
Sbjct: 729 REAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEY 788
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
N A + +A+ P+ LW + + +E + + H D L
Sbjct: 789 RAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEH---DPHVLL 845
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
+ K ++ AR+ F R V+ ++ +W + KFE++ G ++ V +R
Sbjct: 846 AVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR 900
>RGD|1307103 [details] [associations]
symbol:Prpf6 "PRP6 pre-mRNA processing factor 6 homolog (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000244
"assembly of spliceosomal tri-snRNP" evidence=ISO] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=IEA;ISO] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005682 "U5 snRNP" evidence=IEA;ISO] [GO:0006403 "RNA
localization" evidence=IEA;ISO] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA;ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IEA;ISO] [GO:0050681
"androgen receptor binding" evidence=IEA;ISO] [GO:0071001 "U4/U6
snRNP" evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 RGD:1307103 GO:GO:0016607 GO:GO:0045944 GO:GO:0005682
GO:GO:0003723 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0000398 GO:GO:0071013 GO:GO:0046540
GO:GO:0006403 GO:GO:0071001 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
GeneTree:ENSGT00550000075016 HOVERGEN:HBG023330 OrthoDB:EOG4FTVZW
EMBL:CH474066 EMBL:BC128779 IPI:IPI00368842 RefSeq:NP_001073234.1
UniGene:Rn.17062 ProteinModelPortal:A1A5S1 STRING:A1A5S1
Ensembl:ENSRNOT00000021722 GeneID:366276 KEGG:rno:366276
UCSC:RGD:1307103 InParanoid:A1A5S1 NextBio:689115
Genevestigator:A1A5S1 Uniprot:A1A5S1
Length = 941
Score = 158 (60.7 bits), Expect = 5.8e-08, P = 5.8e-08
Identities = 50/213 (23%), Positives = 101/213 (47%)
Query: 15 AEQILRESQEHFGEQKSVDPTELYDYRLH-KRNDFEDSIRRV----PGDTAVWINYAKWE 69
A I + + F +KSV Y + H R E ++R P +W+ AK +
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 618
Query: 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129
+ ARS+ LA + + + +W + E N AR + +A + P ++
Sbjct: 619 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTA-RV 677
Query: 130 WYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSYIKFELRYEQVELARQVFER-LV 187
+ K +++E + GN+ AA+ + + + H+ + W+ + E + E +E AR+ + + L
Sbjct: 678 FMKSVKLEWVLGNITAAQELCEEALRHYEDFPKLWMMKGQIEEQGELMERAREAYNQGLK 737
Query: 188 QCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+C P+ W+ ++ E + G++ RAR + E++
Sbjct: 738 KC-PHSTPLWLLLSRLEEKIGQLTRARAILEKS 769
Score = 135 (52.6 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 42/160 (26%), Positives = 72/160 (45%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121
W+ A + N + AR+++ AL+ ++W + A FE + + RAVA
Sbjct: 543 WMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVA 602
Query: 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELAR 180
P + LW + + +AG+V AAR I P+ ++ WL+ +K E + E AR
Sbjct: 603 HCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERAR 662
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++ + P ++K K E G I A+ + E A
Sbjct: 663 RLLAKARSSAPTA-RVFMKSVKLEWVLGNITAAQELCEEA 701
Score = 122 (48.0 bits), Expect = 0.00050, P = 0.00050
Identities = 36/175 (20%), Positives = 75/175 (42%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R + +++ P T +W+ ++ E + RAR++ E + ++ +N LW + E
Sbjct: 729 REAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEY 788
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
N A + +A+ P+ LW + + +E + + H D L
Sbjct: 789 RAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEH---DPHVLL 845
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
+ K ++ AR+ F R V+ ++ +W + KFE++ G ++ V +R
Sbjct: 846 AVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR 900
>TAIR|locus:2086132 [details] [associations]
symbol:HCF107 "high chlorophyll fluorescent 107"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;IMP]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0006417 "regulation
of translation" evidence=RCA;IMP] [GO:0009657 "plastid
organization" evidence=RCA;IMP] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005774 "vacuolar membrane" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0010207 "photosystem II assembly"
evidence=RCA] [GO:0030154 "cell differentiation" evidence=RCA]
[GO:0034660 "ncRNA metabolic process" evidence=RCA] [GO:0035304
"regulation of protein dephosphorylation" evidence=RCA] [GO:0042793
"transcription from plastid promoter" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 GO:GO:0005774 EMBL:CP002686 GO:GO:0006417
GO:GO:0009941 GO:GO:0006396 GO:GO:0009657 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 EMBL:AY093112 EMBL:BT008405
IPI:IPI00517465 RefSeq:NP_188329.1 UniGene:At.22706
ProteinModelPortal:Q8RWG2 SMR:Q8RWG2 STRING:Q8RWG2 PaxDb:Q8RWG2
PRIDE:Q8RWG2 EnsemblPlants:AT3G17040.1 GeneID:820961
KEGG:ath:AT3G17040 TAIR:At3g17040 eggNOG:NOG300398
InParanoid:Q8RWG2 OMA:MEWKEGN PhylomeDB:Q8RWG2
ProtClustDB:CLSN2684191 ArrayExpress:Q8RWG2 Genevestigator:Q8RWG2
Uniprot:Q8RWG2
Length = 652
Score = 152 (58.6 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 41/171 (23%), Positives = 78/171 (45%)
Query: 48 FEDSIRRVPGDTA-VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMIN 106
+E + G+ + +W +A E RAR +++ A D ++ W +A E+
Sbjct: 225 YEKGCQSTQGENSYIWQCWAVLENRLGNVRRARELFDAATVADKKHVAAWHGWANLEIKQ 284
Query: 107 KFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA-WLS 165
I+ ARN+ + + + ++ +E AG AR +F + A WL+
Sbjct: 285 GNISKARNLLAKGLKFCGRNEYIYQTLALLEAKAGRYEQARYLFKQATICNSRSCASWLA 344
Query: 166 YIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNV 216
+ + E++ E+ AR++FE+ VQ P +W + FE G ++R R +
Sbjct: 345 WAQLEIQQERYPAARKLFEKAVQASPKNRFAWHVWGVFEAGVGNVERGRKL 395
Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 41/175 (23%), Positives = 82/175 (46%)
Query: 49 EDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEE-DCRNHTLWCKYAEFEMINK 107
E I P D ++ K Q++ AR ++E + N +W +A E
Sbjct: 192 EKCIAYWPEDGRPYVALGKILSKQSKLAEARILYEKGCQSTQGENSYIWQCWAVLENRLG 251
Query: 108 FINHARNVWDRA-VAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-DQQAWLS 165
+ AR ++D A VA HV W+ + +E GN++ AR + + + + ++ + +
Sbjct: 252 NVRRARELFDAATVADKKHV-AAWHGWANLEIKQGNISKARNLLAKGLKFCGRNEYIYQT 310
Query: 166 YIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
E + + E AR +F++ C+ +SW+ +A+ E+++ AR ++E+A
Sbjct: 311 LALLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKA 365
Score = 127 (49.8 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 37/161 (22%), Positives = 67/161 (41%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
++ A E +++AR +++ A + R+ W +A+ E+ + AR ++++AV
Sbjct: 307 IYQTLALLEAKAGRYEQARYLFKQATICNSRSCASWLAWAQLEIQQERYPAARKLFEKAV 366
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKF-ELRYEQVELA 179
P W+ + E GNV R + P L + E ++ LA
Sbjct: 367 QASPKNRFAWHVWGVFEAGVGNVERGRKLLKIGHALNPRDPVLLQSLGLLEYKHSSANLA 426
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
R + R + P WI + E + G AR +Y+RA
Sbjct: 427 RALLRRASELDPRHQPVWIAWGWMEWKEGNTTTARELYQRA 467
>UNIPROTKB|O94906 [details] [associations]
symbol:PRPF6 "Pre-mRNA-processing factor 6" species:9606
"Homo sapiens" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=NAS]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0008380 "RNA splicing" evidence=NAS;TAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0003713 "transcription
coactivator activity" evidence=IGI] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006403 "RNA
localization" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0050681 "androgen receptor binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IDA]
[GO:0005682 "U5 snRNP" evidence=IDA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IDA] [GO:0071001 "U4/U6 snRNP"
evidence=IDA] [GO:0000244 "assembly of spliceosomal tri-snRNP"
evidence=IC;IMP] Reactome:REACT_71 InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 Pfam:PF13181 SMART:SM00386
GO:GO:0005654 GO:GO:0016607 Reactome:REACT_1675 GO:GO:0045944
GO:GO:0005682 GO:GO:0000244 GO:GO:0003723 Orphanet:791
EMBL:AL118506 GO:GO:0003713 eggNOG:COG0457 Gene3D:1.25.40.10
GO:GO:0043021 GO:GO:0071013 GO:GO:0000245 GO:GO:0046540
GO:GO:0006403 ChiTaRS:PRPF6 GO:GO:0071001 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 CTD:24148
HOVERGEN:HBG023330 OrthoDB:EOG4FTVZW EMBL:AB019219 EMBL:AF221842
EMBL:AF026031 EMBL:AK001554 EMBL:AK314310 EMBL:AL356790
EMBL:AL355803 EMBL:BC001666 EMBL:AL137320 IPI:IPI00305068
PIR:T46386 RefSeq:NP_036601.2 UniGene:Hs.31334
ProteinModelPortal:O94906 SMR:O94906 DIP:DIP-29006N IntAct:O94906
MINT:MINT-260551 STRING:O94906 PhosphoSite:O94906 PaxDb:O94906
PeptideAtlas:O94906 PRIDE:O94906 Ensembl:ENST00000266079
Ensembl:ENST00000535781 GeneID:24148 KEGG:hsa:24148 UCSC:uc002yho.3
GeneCards:GC20P062612 HGNC:HGNC:15860 HPA:HPA047106 MIM:613979
MIM:613983 neXtProt:NX_O94906 PharmGKB:PA25682 InParanoid:O94906
PhylomeDB:O94906 GenomeRNAi:24148 NextBio:46847 Bgee:O94906
CleanEx:HS_PRPF6 Genevestigator:O94906 GermOnline:ENSG00000101161
Uniprot:O94906
Length = 941
Score = 152 (58.6 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 50/213 (23%), Positives = 99/213 (46%)
Query: 15 AEQILRESQEHFGEQKSVDPTELYDYRLH-KRNDFEDSIRRV----PGDTAVWINYAKWE 69
A I + + F +KSV Y + H R E ++R P +W+ AK +
Sbjct: 559 ARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVAHCPKAEVLWLMGAKSK 618
Query: 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129
+ ARS+ LA + + + +W + E N AR + +A + P ++
Sbjct: 619 WLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERARRLLAKARSSAPTA-RV 677
Query: 130 WYKYIRMEEIAGNVAAAR-LIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFER-LV 187
+ K +++E + N+ AA+ L + H+ + W+ + E + E +E AR+ + + L
Sbjct: 678 FMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLK 737
Query: 188 QCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+C P+ W+ ++ E + G++ RAR + E++
Sbjct: 738 KC-PHSTPLWLLLSRLEEKIGQLTRARAILEKS 769
Score = 133 (51.9 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 41/160 (25%), Positives = 74/160 (46%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121
W+ A + N + AR+++ AL+ ++W + A FE + + RAVA
Sbjct: 543 WMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAVA 602
Query: 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELAR 180
P + LW + + +AG+V AAR I P+ ++ WL+ +K E ++ E AR
Sbjct: 603 HCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERAR 662
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++ + P ++K K E + I A+++ E A
Sbjct: 663 RLLAKARSSAPTA-RVFMKSVKLEWVQDNIRAAQDLCEEA 701
Score = 124 (48.7 bits), Expect = 0.00030, P = 0.00030
Identities = 38/175 (21%), Positives = 76/175 (43%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R + +++ P T +W+ ++ E + RAR++ E + ++ +N LW + E
Sbjct: 729 REAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEY 788
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
N A + +A+ P+ LW + I +E A + + D D L
Sbjct: 789 RAGLKNIANTLMAKALQECPNSGILWSEAIFLE--ARPQRRTKSV-DALKKCEHDPHVLL 845
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219
+ K ++ AR+ F R V+ ++ +W + KFE++ G ++ V +R
Sbjct: 846 AVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKR 900
Score = 120 (47.3 bits), Expect = 0.00083, P = 0.00083
Identities = 43/174 (24%), Positives = 69/174 (39%)
Query: 41 RLHKRNDFEDSIRRV------PGDTA-VWINYAKWEGSQNEFDRARSMWELALEEDCRNH 93
+L ND + RR+ TA V++ K E Q+ A+ + E AL
Sbjct: 650 KLESENDEYERARRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFP 709
Query: 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRW 153
LW + E + + AR +++ + PH LW R+EE G + AR I ++
Sbjct: 710 KLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKS 769
Query: 154 MHWTPDQQA-WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR 206
P WL ++ E R +A + + +Q PN W + E R
Sbjct: 770 RLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAIFLEAR 823
>POMBASE|SPBC6B1.07 [details] [associations]
symbol:prp1 "U4/U6 x U5 tri-snRNP complex subunit Prp1"
species:4896 "Schizosaccharomyces pombe" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=IMP] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISO] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 SMART:SM00028 SMART:SM00386 PomBase:SPBC6B1.07
EMBL:CU329671 GenomeReviews:CU329671_GR eggNOG:COG0457
Gene3D:1.25.40.10 GO:GO:0046540 GO:GO:0045292 EMBL:D83659
EMBL:D83743 PIR:T45158 RefSeq:NP_596086.1 ProteinModelPortal:Q12381
IntAct:Q12381 STRING:Q12381 EnsemblFungi:SPBC6B1.07.1
GeneID:2541185 KEGG:spo:SPBC6B1.07 HOGENOM:HOG000116247 KO:K12855
OMA:IWLRAAY OrthoDB:EOG4D82F8 NextBio:20802297 InterPro:IPR027108
PANTHER:PTHR11246:SF1 Uniprot:Q12381
Length = 906
Score = 150 (57.9 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 49/193 (25%), Positives = 87/193 (45%)
Query: 30 KSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEED 89
++V+ +LY + E ++ P +W+ YAK + N+ AR++ A E +
Sbjct: 549 RAVELEKLYGTTESVCSILEKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYN 608
Query: 90 CRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLI 149
+ +W E +N AR + RA + +++W K I +E I A +
Sbjct: 609 SNSEEIWLAAVRIEFVNNENERARKLLARA-RIESGTERIWTKSISLERILDEKDRALQL 667
Query: 150 FDRWMHWTP--DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR 207
+ + P D+ + FE + EQ+ELAR + + P + W+ AK E ++
Sbjct: 668 LENALKIYPHYDKLYMMKGQIFEDK-EQIELARDAYLAGTKVCPYSIPLWLLLAKLEEKQ 726
Query: 208 GEIDRARNVYERA 220
I RAR V++RA
Sbjct: 727 SVI-RARVVFDRA 738
Score = 132 (51.5 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 37/160 (23%), Positives = 71/160 (44%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121
W++ A+ ++ D AR+++ +L ++ LW + E E + ++ ++AV
Sbjct: 513 WLDDAQSFIARKCIDCARAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVE 572
Query: 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELAR 180
P + LW Y + + ++A AR I R + + ++ WL+ ++ E + E AR
Sbjct: 573 SCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERAR 632
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++ R + W K E E DRA + E A
Sbjct: 633 KLLAR-ARIESGTERIWTKSISLERILDEKDRALQLLENA 671
Score = 126 (49.4 bits), Expect = 0.00018, P = 0.00018
Identities = 39/171 (22%), Positives = 76/171 (44%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYA-EFEMIN 106
F S+R P +W+ + E + S+ E A+E + LW YA E + +N
Sbjct: 533 FAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVESCPKAEILWLLYAKERKNVN 592
Query: 107 KFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSY 166
I ARN+ RA + +++W +R+E + AR + R + ++ W
Sbjct: 593 D-IAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERARKLLARARIESGTERIWTKS 651
Query: 167 IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVY 217
I E ++ + A Q+ E ++ +P+ ++ + + +I+ AR+ Y
Sbjct: 652 ISLERILDEKDRALQLLENALKIYPHYDKLYMMKGQIFEDKEQIELARDAY 702
Score = 124 (48.7 bits), Expect = 0.00029, P = 0.00029
Identities = 42/161 (26%), Positives = 68/161 (42%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W+ + E NE +RAR + A E +W K E I + A + + A+
Sbjct: 614 IWLAAVRIEFVNNENERARKLLARARIES-GTERIWTKSISLERILDEKDRALQLLENAL 672
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELA 179
+ PH D+L+ ++ E + AR + P WL K E + + V A
Sbjct: 673 KIYPHYDKLYMMKGQIFEDKEQIELARDAYLAGTKVCPYSIPLWLLLAKLEEK-QSVIRA 731
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
R VF+R +P W++ K E+R G I + R +A
Sbjct: 732 RVVFDRAKVKNPKNEFLWLELIKMELRAGNISQVRAALAKA 772
>ASPGD|ASPL0000068414 [details] [associations]
symbol:AN7447 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=IEA] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF06424 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00028 SMART:SM00386 GO:GO:0005634 eggNOG:COG0457
Gene3D:1.25.40.10 EMBL:AACD01000129 EMBL:BN001304 GO:GO:0000398
HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY OrthoDB:EOG4D82F8
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_680716.1
ProteinModelPortal:Q5AW83 STRING:Q5AW83
EnsemblFungi:CADANIAT00000537 GeneID:2869476 KEGG:ani:AN7447.2
Uniprot:Q5AW83
Length = 941
Score = 152 (58.6 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 37/154 (24%), Positives = 73/154 (47%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W++ AK S+ +++ AR+++ AL ++W A+ E + V ++AV
Sbjct: 543 IWMDDAKASISRGKYETARAIYAYALRVFVNRRSIWVAAADLERNHGTKEALWQVLEKAV 602
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ-AWLSYIKFELRYEQVELA 179
P ++LW + + + +G + AR + R + P+ + WL+ +K E +Q + A
Sbjct: 603 EACPQSEELWLQLAKEKWQSGEIDDARRVLGRAFNQNPNNEDIWLAAVKLEADAQQTDQA 662
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRA 213
R++ + WIK FE + G +D A
Sbjct: 663 RELLAT-ARREAGTDRVWIKSVAFERQLGNVDDA 695
Score = 140 (54.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 42/175 (24%), Positives = 79/175 (45%)
Query: 49 EDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKF 108
E ++ P +W+ AK + E D AR + A ++ N +W + E +
Sbjct: 599 EKAVEACPQSEELWLQLAKEKWQSGEIDDARRVLGRAFNQNPNNEDIWLAAVKLEADAQQ 658
Query: 109 INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYI 167
+ AR + A D++W K + E GNV A + ++ + P + W+ +
Sbjct: 659 TDQARELLATARREAG-TDRVWIKSVAFERQLGNVDDALDLVNQGLQLYPKADKLWM--M 715
Query: 168 KFELRYEQVEL--ARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
K ++ Q +L AR+ + + P V+ W+ ++ E + G + RAR+V +RA
Sbjct: 716 KGQIYESQNKLPQAREAYGTGTRACPKSVALWLLASRLEEKAGAVVRARSVLDRA 770
Score = 43 (20.2 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 460 LEAASKWIKKKIVSN 474
LE A W +K I+SN
Sbjct: 859 LEKAMTWFEKAIISN 873
Score = 39 (18.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 309 KHLKVWISYAKFEASA 324
KH +VW S AK A+A
Sbjct: 909 KHGEVWQSIAKNPANA 924
>UNIPROTKB|Q14690 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
Length = 1871
Score = 147 (56.8 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 51/230 (22%), Positives = 104/230 (45%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFGEQKSVDPTELYDYRL-HKRNDFEDSIRRVPGDTAVW 62
+ P A I+K+ ++ E Q+ E ++ + R +DF+ + P + +W
Sbjct: 1563 EKPHQATIKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILW 1622
Query: 63 INYAKWEGSQNEFDRARSMWELALE-----EDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+ Y + E ++AR++ E AL+ E+ +W E + V++
Sbjct: 1623 LQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFE 1682
Query: 118 RAVA------VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSYIKFE 170
RAV V H+ ++ K + +E AG +++R + + ++ W+ Y F
Sbjct: 1683 RAVQYNEPLKVFLHLADIYAKSEKFQE-AGE------LYNRMLKRFRQEKAVWIKYGAFL 1735
Query: 171 LRYEQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRGEIDRARNVYE 218
LR Q + +V +R ++C P+ V K+A+ E + G+ +RA+ ++E
Sbjct: 1736 LRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFE 1785
>FB|FBgn0036828 [details] [associations]
symbol:CG6841 species:7227 "Drosophila melanogaster"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0005684 "U2-type spliceosomal complex" evidence=ISS]
[GO:0005682 "U5 snRNP" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IC] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR003107 InterPro:IPR010491 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293 SMART:SM00386
EMBL:AE014296 GO:GO:0022008 GO:GO:0005682 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 KO:K12855
OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 FlyBase:FBgn0036828 EMBL:BT021415
RefSeq:NP_649073.1 UniGene:Dm.11665 SMR:Q9VVU6 MINT:MINT-316737
STRING:Q9VVU6 EnsemblMetazoa:FBtr0075068 GeneID:40064
KEGG:dme:Dmel_CG6841 UCSC:CG6841-RA InParanoid:Q9VVU6
GenomeRNAi:40064 NextBio:816818 Uniprot:Q9VVU6
Length = 931
Score = 139 (54.0 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 43/160 (26%), Positives = 74/160 (46%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121
WI+ A++ +N F+ AR+++ AL+ ++W + A FE + + RAVA
Sbjct: 533 WIDDAEFCAKENAFECARAVYAHALQIFPSKKSIWLRAAYFEKNHGTRESLEALLQRAVA 592
Query: 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ-AWLSYIKFELRYEQVELAR 180
P + LW + + +AG+V AAR I P+ + WL+ +K E + E AR
Sbjct: 593 HCPKSEILWLMGAKSKWMAGDVPAARGILSLAFQANPNSEDIWLAAVKLESENSEYERAR 652
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++ + P +K A+ E + D A + E A
Sbjct: 653 RLLAKARGSAPTP-RVMMKSARLEWALEKFDEALRLLEEA 691
>WB|WBGene00013343 [details] [associations]
symbol:prp-6 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040039 "inductive cell migration" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0018996 "molting cycle, collagen and cuticulin-based cuticle"
evidence=IMP] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
Pfam:PF06424 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0018996
GO:GO:0000003 eggNOG:COG0457 Gene3D:1.25.40.10 GO:GO:0040039
GO:GO:0040015 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
EMBL:AL132898 HOGENOM:HOG000116247 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1
GeneTree:ENSGT00550000075016 RefSeq:NP_507525.1
ProteinModelPortal:Q9GRZ2 SMR:Q9GRZ2 STRING:Q9GRZ2 PaxDb:Q9GRZ2
EnsemblMetazoa:Y59A8B.6.1 EnsemblMetazoa:Y59A8B.6.2 GeneID:180180
KEGG:cel:CELE_Y59A8B.6 UCSC:Y59A8B.6.1 CTD:180180 WormBase:Y59A8B.6
InParanoid:Q9GRZ2 NextBio:908332 Uniprot:Q9GRZ2
Length = 968
Score = 137 (53.3 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 37/159 (23%), Positives = 72/159 (45%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121
W+ A+ + F R+++ +AL+E R ++W FE + ++ + +A
Sbjct: 569 WLADAENFEKEEAFTCVRTVYAIALKEFSRKRSIWDAAIHFEREHGSLDEHEAILLKACE 628
Query: 122 VLPHVDQLWYKYIRMEEIAGNVAAAR--LIFDRWMHWTPDQQAWLSYIKFELRYEQVELA 179
+P V+ W ++ + V AR L+ H ++ WL+ K E+ +Q + A
Sbjct: 629 TVPEVEDYWLMLAKLRFVNKRVGEARDTLMSAFEKHGHQSEKIWLAATKIEIETDQFDTA 688
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYE 218
R +F + P+ W+K A FE G ++ A+ + E
Sbjct: 689 RGLFGKARAKAPSA-RVWMKNAHFEWCLGNVEEAKRLCE 726
Score = 121 (47.7 bits), Expect = 0.00067, P = 0.00067
Identities = 32/130 (24%), Positives = 62/130 (47%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAE-FEMINKFINHARNVWDRA 119
VW+ A +E + A+ + E +++ H ++ + E +N ++ AR + +
Sbjct: 704 VWMKNAHFEWCLGNVEEAKRLCEECIQKYDDFHKIYLVLGQVLEQMND-VHGARLAYTQG 762
Query: 120 VAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-DQQAWLSYIKFELRYEQVEL 178
+ P V LW +R+EE AG + AR+ ++ P + WL ++FE R E+
Sbjct: 763 IRKCPGVIPLWILLVRLEEKAGQIVKARVDLEKARLRNPKNDDLWLESVRFEQRVGCPEM 822
Query: 179 ARQVFERLVQ 188
A++ R +Q
Sbjct: 823 AKERMSRALQ 832
>ZFIN|ZDB-GENE-040426-685 [details] [associations]
symbol:xab2 "XPA binding protein 2" species:7955
"Danio rerio" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386
ZFIN:ZDB-GENE-040426-685 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
HOVERGEN:HBG024066 EMBL:BC056771 IPI:IPI00614939 UniGene:Dr.12501
ProteinModelPortal:Q6PGZ8 STRING:Q6PGZ8 InParanoid:Q6PGZ8
ArrayExpress:Q6PGZ8 Uniprot:Q6PGZ8
Length = 851
Score = 135 (52.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 44/153 (28%), Positives = 75/153 (49%)
Query: 74 EFDRARSMWELALEEDCRNH--TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD--QL 129
+ +RAR ++E AL+ + T++ YA+ E HA V++RA A + + Q+
Sbjct: 567 KLERARDLFEQALDGCPAKYAKTIYLLYAKLEEEYGLARHAMAVYERATAAVEAEERHQM 626
Query: 130 WYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQQA---WLSYIKFELRYEQVELARQVFER 185
+ YI R EI G V R I+ + + PD+ A L + E + +++ AR ++
Sbjct: 627 FNIYIKRAAEIYG-VTHTRAIYQKAIEVLPDEHARDMCLRFADMESKLGEIDRARAIYSY 685
Query: 186 LVQ-CHPNVVSS-WIKYAKFEMRRGEIDRARNV 216
Q C P V + W + +FE+R G D R +
Sbjct: 686 CSQICDPRVTAHFWQTWKEFEIRHGNEDTIREM 718
>RGD|1304933 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
Length = 1876
Score = 138 (53.6 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 51/231 (22%), Positives = 103/231 (44%)
Query: 2 AKKNPRGAPIRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAV 61
AKK +G R+ +Q + E+ +DP + +DF+ + P + +
Sbjct: 1572 AKKK-KGKKERELEKQKAEKELSRI-EEALMDPGR----QPESADDFDRLVLSSPNSSIL 1625
Query: 62 WINYAKWEGSQNEFDRARSMWELALE-----EDCRNHTLWCKYAEFEMINKFINHARNVW 116
W+ Y + E ++AR++ E AL+ E+ +W E + V+
Sbjct: 1626 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLAKVF 1685
Query: 117 DRAVA------VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSYIKF 169
+RAV V H+ ++ K + +E AG +++R + + ++ W+ Y F
Sbjct: 1686 ERAVQYNEPLKVFLHLADIYTKSEKFKE-AGE------LYNRMLKRFRQEKAVWIKYGAF 1738
Query: 170 ELRYEQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRGEIDRARNVYE 218
L Q + +V +R ++C P V +K+A+ E + G+++RA+ ++E
Sbjct: 1739 VLGRSQAGASHRVLQRALECLPTKEHVDVIVKFAQLEFQLGDVERAKAIFE 1789
>MGI|MGI:1341788 [details] [associations]
symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
"transcription factor binding" evidence=ISO] [GO:0043123 "positive
regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
Length = 1862
Score = 136 (52.9 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 51/231 (22%), Positives = 103/231 (44%)
Query: 2 AKKNPRGAPIRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAV 61
AKK +G R+ +Q + E+ +DP + +DF+ + P + +
Sbjct: 1559 AKKK-KGKKERELEKQKAEKELSRI-EEALMDPGR----QPESADDFDRLVLSSPNSSIL 1612
Query: 62 WINYAKWEGSQNEFDRARSMWELALE-----EDCRNHTLWCKYAEFEMINKFINHARNVW 116
W+ Y + E ++AR++ E AL+ E+ +W E + V+
Sbjct: 1613 WLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVF 1672
Query: 117 DRAVA------VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSYIKF 169
+RAV V H+ ++ K + +E AG +++R + + ++ W+ Y F
Sbjct: 1673 ERAVQYNEPLKVFLHLADIYTKSEKYKE-AGE------LYNRMLKRFRQEKAVWIKYGAF 1725
Query: 170 ELRYEQVELARQVFERLVQCHP--NVVSSWIKYAKFEMRRGEIDRARNVYE 218
L Q + +V +R ++C P V +K+A+ E + G+++RA+ ++E
Sbjct: 1726 VLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVERAKAIFE 1776
>FB|FBgn0033859 [details] [associations]
symbol:CG6197 species:7227 "Drosophila melanogaster"
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
[GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0071013 "catalytic step
2 spliceosome" evidence=IDA] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 EMBL:AE013599 GO:GO:0006911 Gene3D:1.25.40.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381
eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW GeneTree:ENSGT00550000075140
EMBL:BT133178 RefSeq:NP_610891.1 UniGene:Dm.606 SMR:A1Z9G2
IntAct:A1Z9G2 STRING:A1Z9G2 EnsemblMetazoa:FBtr0087623 GeneID:36514
KEGG:dme:Dmel_CG6197 UCSC:CG6197-RA FlyBase:FBgn0033859
InParanoid:A1Z9G2 OrthoDB:EOG42FQZD GenomeRNAi:36514 NextBio:798953
Uniprot:A1Z9G2
Length = 883
Score = 131 (51.2 bits), Expect = 4.9e-05, P = 4.9e-05
Identities = 45/180 (25%), Positives = 85/180 (47%)
Query: 51 SIRRVPGDTAVWINY-AKW--EGSQNEFDRARSMWELALEEDCRNHT--LWCKYAEFEMI 105
S+ + P +W +Y K+ + +RAR ++E L++ H + YA+ E
Sbjct: 545 SLFKWPNVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAKLEEE 604
Query: 106 NKFINHARNVWDRAVAVLPHVDQLWYKYI----RMEEIAGNVAAARLIFDRWMHWTPDQQ 161
+ HA +V+DRA + + D+++ Y + EI G + R I+++ + P+Q
Sbjct: 605 HGLARHAMSVYDRATSAVKE-DEMFDMYNIFIKKAAEIYG-LPRTREIYEKAIESLPEQN 662
Query: 162 AWLSYIKF---ELRYEQVELARQVFERLVQ-CHPNVVSS-WIKYAKFEMRRGEIDRARNV 216
+KF E + +V+ AR ++ Q C P + + W + +FE+R G D R +
Sbjct: 663 MRHMCVKFAELETKLGEVDRARAIYAHCSQVCDPRITADFWQTWKEFEVRHGNEDTMREM 722
Score = 121 (47.7 bits), Expect = 0.00060, P = 0.00060
Identities = 38/168 (22%), Positives = 79/168 (47%)
Query: 63 INYAKWEGSQNEFDRARSMWE--LALEEDCRNHTLWCKYAEFEMINKF----INHARNVW 116
INY + N F+ A +E ++L + + +W Y + + ++ + AR+++
Sbjct: 521 INYGMFLEEHNYFEEAYRAYEKGISLFKWPNVYDIWNSYLT-KFLERYGGTKLERARDLF 579
Query: 117 DRAVAVLP--HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSY---IKFEL 171
++ + P H + Y ++EE G A ++DR + + + Y IK
Sbjct: 580 EQCLDQCPPEHAKYFYLLYAKLEEEHGLARHAMSVYDRATSAVKEDEMFDMYNIFIKKAA 639
Query: 172 RYEQVELARQVFERLVQCHP--NVVSSWIKYAKFEMRRGEIDRARNVY 217
+ R+++E+ ++ P N+ +K+A+ E + GE+DRAR +Y
Sbjct: 640 EIYGLPRTREIYEKAIESLPEQNMRHMCVKFAELETKLGEVDRARAIY 687
>UNIPROTKB|F1S842 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
ArrayExpress:F1S842 Uniprot:F1S842
Length = 1859
Score = 134 (52.2 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 50/230 (21%), Positives = 102/230 (44%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFGEQKSVDPTELYDYRL-HKRNDFEDSIRRVPGDTAVW 62
+ P A +K+ ++ E Q+ E ++ + R +DF+ + P + +W
Sbjct: 1551 EKPEQATKKKSKKERELEKQKAEKELSRLEEALMDPGRQPESADDFDRLVLSSPNSSILW 1610
Query: 63 INYAKWEGSQNEFDRARSMWELALE-----EDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+ Y + E ++AR++ E AL+ E+ +W E + V++
Sbjct: 1611 LQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFE 1670
Query: 118 RAVA------VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSYIKFE 170
RAV V H+ ++ K + +E AG +++R + + ++ W+ Y F
Sbjct: 1671 RAVQYNEPLKVFLHLADIYTKSEKFQE-AGE------LYNRMLKRFRQEKAVWIKYGAFL 1723
Query: 171 LRYEQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRGEIDRARNVYE 218
LR Q + +V +R ++C P V K+A+ E + G+ +RA+ ++E
Sbjct: 1724 LRRGQAGASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERAKAIFE 1773
Score = 126 (49.4 bits), Expect = 0.00041, P = 0.00041
Identities = 36/155 (23%), Positives = 72/155 (46%)
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQ-- 128
S ++FDR L L + LW +Y F + I AR V +RA+ + ++
Sbjct: 1592 SADDFDR------LVLSSP-NSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQE 1644
Query: 129 ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFER 185
+W + +E + G+ + +F+R + + + +L + E+ + A +++ R
Sbjct: 1645 KLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNR 1704
Query: 186 LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+++ + WIKY F +RRG+ + V +RA
Sbjct: 1705 MLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRA 1739
>TAIR|locus:2007973 [details] [associations]
symbol:CSTF77 species:3702 "Arabidopsis thaliana"
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031123 "RNA 3'-end processing"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0009630 "gravitropism" evidence=RCA] InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 Pfam:PF05843 PROSITE:PS50005 PROSITE:PS50293
SMART:SM00386 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0045892 GO:GO:0003729 GO:GO:0006397 Gene3D:1.25.40.10
eggNOG:COG5107 KO:K14408 GO:GO:0031123 UniGene:At.27878
UniGene:At.28561 EMBL:BT002320 IPI:IPI00548656 RefSeq:NP_173218.2
SMR:Q8GUP1 IntAct:Q8GUP1 STRING:Q8GUP1 EnsemblPlants:AT1G17760.1
GeneID:838354 KEGG:ath:AT1G17760 TAIR:At1g17760
HOGENOM:HOG000030800 InParanoid:Q8GUP1 OMA:FEQTYGD
ProtClustDB:CLSN2690404 Genevestigator:Q8GUP1 Uniprot:Q8GUP1
Length = 734
Score = 129 (50.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 47/187 (25%), Positives = 88/187 (47%)
Query: 12 RKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVP--G---DTAVWINYA 66
R+ A+ ++ E Q F ++V Y R + + ++ VP G + W+ +
Sbjct: 175 RQLAKGLVNEYQPKFNSARAV-----YRERKKYIEEIDWNMLAVPPTGTSKEETQWVAWK 229
Query: 67 KW----EGSQNEFDRARSMWEL--ALEED--CRNH--TLWCKYAEFEMINKFINHARNVW 116
K+ +G+ D A S + A E+ C H +W YAE+ + + + A V+
Sbjct: 230 KFLSFEKGNPQRIDTASSTKRIIYAYEQCLMCLYHYPDVWYDYAEWHVKSGSTDAAIKVF 289
Query: 117 DRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQV 176
RA+ +P + L Y + MEE G + +A+ +++ + + + A + Y++F R E V
Sbjct: 290 QRALKAIPDSEMLKYAFAEMEESRGAIQSAKKLYENILGASTNSLAHIQYLRFLRRAEGV 349
Query: 177 ELARQVF 183
E AR+ F
Sbjct: 350 EAARKYF 356
>UNIPROTKB|A7MB10 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
Uniprot:A7MB10
Length = 1874
Score = 137 (53.3 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 44/186 (23%), Positives = 86/186 (46%)
Query: 47 DFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALE-----EDCRNHTLWCKYAE 101
DF+ + P + +W+ Y + E ++AR++ E AL+ E+ +W
Sbjct: 1610 DFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLN 1669
Query: 102 FEMINKFINHARNVWDRAVA------VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM- 154
E + V++RAV V H+ ++ K + +E AG +++R +
Sbjct: 1670 LENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQE-AGE------LYNRMLK 1722
Query: 155 HWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRGEIDR 212
+ ++ W+ Y F LR + E + +V +R ++C P V K+A+ E + G+ +R
Sbjct: 1723 RFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAER 1782
Query: 213 ARNVYE 218
AR ++E
Sbjct: 1783 ARAIFE 1788
Score = 45 (20.9 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 1 MAKKNPRGAPIRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDT 59
M + PRG RKT +S++ F Q+SV+ L+D + + I++ P T
Sbjct: 4 MEESFPRGGT-RKT-----HKSEKAF--QQSVEQDNLFDISTEEESTKRKKIQKGPAKT 54
>UNIPROTKB|G5E5C4 [details] [associations]
symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
Uniprot:G5E5C4
Length = 1874
Score = 137 (53.3 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 44/186 (23%), Positives = 86/186 (46%)
Query: 47 DFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALE-----EDCRNHTLWCKYAE 101
DF+ + P + +W+ Y + E ++AR++ E AL+ E+ +W
Sbjct: 1610 DFDRLVLSSPSSSLLWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLN 1669
Query: 102 FEMINKFINHARNVWDRAVA------VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM- 154
E + V++RAV V H+ ++ K + +E AG +++R +
Sbjct: 1670 LENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQE-AGE------LYNRMLK 1722
Query: 155 HWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRGEIDR 212
+ ++ W+ Y F LR + E + +V +R ++C P V K+A+ E + G+ +R
Sbjct: 1723 RFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAER 1782
Query: 213 ARNVYE 218
AR ++E
Sbjct: 1783 ARAIFE 1788
Score = 45 (20.9 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 1 MAKKNPRGAPIRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDT 59
M + PRG RKT +S++ F Q+SV+ L+D + + I++ P T
Sbjct: 4 MEESFPRGGT-RKT-----HKSEKAF--QQSVEQDNLFDISTEEESTKRKKIQKGPAKT 54
>UNIPROTKB|F1S843 [details] [associations]
symbol:LOC100157027 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
ArrayExpress:F1S843 Uniprot:F1S843
Length = 1876
Score = 133 (51.9 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 43/187 (22%), Positives = 86/187 (45%)
Query: 46 NDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALE-----EDCRNHTLWCKYA 100
+DF+ + P + +W+ Y + E ++AR++ E AL+ E+ +W
Sbjct: 1611 DDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALL 1670
Query: 101 EFEMINKFINHARNVWDRAVA------VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM 154
E + V++RAV V H+ ++ K + +E AG +++R +
Sbjct: 1671 NLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQE-AGE------LYNRML 1723
Query: 155 -HWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRGEID 211
+ ++ W+ Y F LR Q + +V +R ++C P V K+A+ E + G+ +
Sbjct: 1724 KRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAE 1783
Query: 212 RARNVYE 218
RA+ ++E
Sbjct: 1784 RAKAIFE 1790
Score = 126 (49.4 bits), Expect = 0.00041, P = 0.00041
Identities = 36/155 (23%), Positives = 72/155 (46%)
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQ-- 128
S ++FDR L L + LW +Y F + I AR V +RA+ + ++
Sbjct: 1609 SADDFDR------LVLSSP-NSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQE 1661
Query: 129 ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFER 185
+W + +E + G+ + +F+R + + + +L + E+ + A +++ R
Sbjct: 1662 KLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKFQEAGELYNR 1721
Query: 186 LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+++ + WIKY F +RRG+ + V +RA
Sbjct: 1722 MLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRA 1756
>UNIPROTKB|J9PAI6 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459
Ensembl:ENSCAFT00000044264 Uniprot:J9PAI6
Length = 799
Score = 125 (49.1 bits), Expect = 0.00019, P = 0.00019
Identities = 49/181 (27%), Positives = 82/181 (45%)
Query: 51 SIRRVPGDTAVWINY-----AKWEGSQNEFDRARSMWELALEEDCRNH--TLWCKYAEFE 103
S+ + P + +W Y A++ G + +RAR ++E AL+ + TL+ YA+ E
Sbjct: 546 SLFKWPNVSDIWSTYLTKFIARYGG--RKLERARDLFEQALDGCPPKYAKTLYLLYAQLE 603
Query: 104 MINKFINHARNVWDRAVAVLPHVDQ--LWYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQ 160
HA V++RA + Q ++ YI R EI G V R I+ + + D+
Sbjct: 604 EEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYG-VTHTRGIYQKAIEVLSDE 662
Query: 161 QA---WLSYIKFELRYEQVELARQVFERLVQ-CHPNVVSS-WIKYAKFEMRRGEIDRARN 215
A L + E R +++ AR ++ Q C P + W + FE+R G D R
Sbjct: 663 HAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIRE 722
Query: 216 V 216
+
Sbjct: 723 M 723
>WB|WBGene00016837 [details] [associations]
symbol:C50F2.3 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR019734
Pfam:PF13181 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0005622
GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10 InterPro:IPR013105
Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 GeneTree:ENSGT00550000075140 EMBL:FO080915
PIR:T29775 RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 48/180 (26%), Positives = 80/180 (44%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSM---WELALEEDCRNHTLW---CKYAE 101
FE+ I R P W Y + QN+ A+ M +E AL R++ LW KY E
Sbjct: 29 FEEDIIRNPTSVNCWQRYIDHK-LQNK-SPAKQMFLIYERALAVFERSYKLWYHYLKYRE 86
Query: 102 FEMINKFI--NHAR---NVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW 156
++NK N R + ++R + L + ++W Y + G + R +FDR +
Sbjct: 87 STIVNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRS 146
Query: 157 TPDQQ---AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRA 213
P Q W YI F ++ E +V+ R ++ +P +++Y + R +ID A
Sbjct: 147 LPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYLKMNPKAREDYVEYL---IERDQIDEA 203
Score = 122 (48.0 bits), Expect = 0.00045, P = 0.00045
Identities = 51/195 (26%), Positives = 83/195 (42%)
Query: 18 ILRESQEHFGEQKSVDPTELYDYRLHKRND-FEDSIRRV-P----GDTA-VWINYAKWEG 70
+LR++ + GE ++ +Y+ +K+ + F+++++ V P G +WI AK
Sbjct: 355 LLRQNPHNVGEW--LNRVNIYEGNYNKQIETFKEAVKSVNPKIQVGKVRDLWIGLAKLYE 412
Query: 71 SQNEFDRARSMWELALEEDCRNHT----LWCKYAEFEMINKFINHARNVWDRAVAVLPHV 126
+ D AR +E A+ + +WC YAE EM +K A V RA V
Sbjct: 413 DNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVMQRACVVPKPG 472
Query: 127 DQ---------------LWYKYIRMEEIAGNVAAARLIFDRWMHW-TPDQQAWLSYIKFE 170
D LW Y EE G V + R ++D+ + Q ++Y F
Sbjct: 473 DYENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFL 532
Query: 171 LRYEQVELARQVFER 185
E ELA Q +E+
Sbjct: 533 EENEYFELAFQAYEK 547
>UNIPROTKB|P91175 [details] [associations]
symbol:C50F2.3 "Protein C50F2.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF13181 SMART:SM00386 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10
InterPro:IPR013105 Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
GeneTree:ENSGT00550000075140 EMBL:FO080915 PIR:T29775
RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
NextBio:873471 Uniprot:P91175
Length = 855
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 48/180 (26%), Positives = 80/180 (44%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSM---WELALEEDCRNHTLW---CKYAE 101
FE+ I R P W Y + QN+ A+ M +E AL R++ LW KY E
Sbjct: 29 FEEDIIRNPTSVNCWQRYIDHK-LQNK-SPAKQMFLIYERALAVFERSYKLWYHYLKYRE 86
Query: 102 FEMINKFI--NHAR---NVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW 156
++NK N R + ++R + L + ++W Y + G + R +FDR +
Sbjct: 87 STIVNKCPTDNSWRALCDTYERCLMRLHKMPRIWICYCEVMIKRGLITETRRVFDRALRS 146
Query: 157 TPDQQ---AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRA 213
P Q W YI F ++ E +V+ R ++ +P +++Y + R +ID A
Sbjct: 147 LPVTQHMRIWTLYIGFLTSHDLPETTIRVYRRYLKMNPKAREDYVEYL---IERDQIDEA 203
Score = 122 (48.0 bits), Expect = 0.00045, P = 0.00045
Identities = 51/195 (26%), Positives = 83/195 (42%)
Query: 18 ILRESQEHFGEQKSVDPTELYDYRLHKRND-FEDSIRRV-P----GDTA-VWINYAKWEG 70
+LR++ + GE ++ +Y+ +K+ + F+++++ V P G +WI AK
Sbjct: 355 LLRQNPHNVGEW--LNRVNIYEGNYNKQIETFKEAVKSVNPKIQVGKVRDLWIGLAKLYE 412
Query: 71 SQNEFDRARSMWELALEEDCRNHT----LWCKYAEFEMINKFINHARNVWDRAVAVLPHV 126
+ D AR +E A+ + +WC YAE EM +K A V RA V
Sbjct: 413 DNGDLDAARKTFETAVISQFGGVSELANVWCAYAEMEMKHKRAKAALTVMQRACVVPKPG 472
Query: 127 DQ---------------LWYKYIRMEEIAGNVAAARLIFDRWMHW-TPDQQAWLSYIKFE 170
D LW Y EE G V + R ++D+ + Q ++Y F
Sbjct: 473 DYENMQSVQARVHRSPILWAMYADYEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFL 532
Query: 171 LRYEQVELARQVFER 185
E ELA Q +E+
Sbjct: 533 EENEYFELAFQAYEK 547
>UNIPROTKB|E2RPV4 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0006351 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 KO:K12867 CTD:56949
GeneTree:ENSGT00550000075140 EMBL:AAEX03012459 RefSeq:XP_542113.3
ProteinModelPortal:E2RPV4 Ensembl:ENSCAFT00000029071 GeneID:484995
KEGG:cfa:484995 OMA:RRYLMYD NextBio:20859059 Uniprot:E2RPV4
Length = 855
Score = 125 (49.1 bits), Expect = 0.00021, P = 0.00021
Identities = 49/181 (27%), Positives = 82/181 (45%)
Query: 51 SIRRVPGDTAVWINY-----AKWEGSQNEFDRARSMWELALEEDCRNH--TLWCKYAEFE 103
S+ + P + +W Y A++ G + +RAR ++E AL+ + TL+ YA+ E
Sbjct: 546 SLFKWPNVSDIWSTYLTKFIARYGG--RKLERARDLFEQALDGCPPKYAKTLYLLYAQLE 603
Query: 104 MINKFINHARNVWDRAVAVLPHVDQ--LWYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQ 160
HA V++RA + Q ++ YI R EI G V R I+ + + D+
Sbjct: 604 EEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYG-VTHTRGIYQKAIEVLSDE 662
Query: 161 QA---WLSYIKFELRYEQVELARQVFERLVQ-CHPNVVSS-WIKYAKFEMRRGEIDRARN 215
A L + E R +++ AR ++ Q C P + W + FE+R G D R
Sbjct: 663 HAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIRE 722
Query: 216 V 216
+
Sbjct: 723 M 723
>SGD|S000002857 [details] [associations]
symbol:UTP6 "Nucleolar protein" species:4932 "Saccharomyces
cerevisiae" [GO:0030515 "snoRNA binding" evidence=IPI] [GO:0034388
"Pwp2p-containing subcomplex of 90S preribosome" evidence=IDA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0000472 "endonucleolytic cleavage to generate mature 5'-end of
SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0032040 "small-subunit processome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0030686 "90S preribosome"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000462
"maturation of SSU-rRNA from tricistronic rRNA transcript
(SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 SGD:S000002857
EMBL:U33007 GO:GO:0030515 EMBL:BK006938 Gene3D:1.25.40.10
EMBL:M95396 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472 GO:GO:0000480
GO:GO:0034388 eggNOG:COG5191 KO:K14557 InterPro:IPR013949
Pfam:PF08640 GeneTree:ENSGT00390000016493 OrthoDB:EOG4STWD9
PIR:S69728 RefSeq:NP_010737.1 ProteinModelPortal:Q02354 SMR:Q02354
DIP:DIP-6479N IntAct:Q02354 MINT:MINT-475620 STRING:Q02354
PaxDb:Q02354 PeptideAtlas:Q02354 EnsemblFungi:YDR449C GeneID:852060
KEGG:sce:YDR449C CYGD:YDR449c HOGENOM:HOG000065928 OMA:WISCAKY
NextBio:970334 Genevestigator:Q02354 GermOnline:YDR449C
Uniprot:Q02354
Length = 440
Score = 118 (46.6 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 26/107 (24%), Positives = 51/107 (47%)
Query: 37 LYDYRLHKRNDF--EDSIRRVPGDTAVW---INYAKWEGSQNEFDRARSMWELALEEDCR 91
L D+ + +R F + + P D W +NY K G+Q + + +++ L+
Sbjct: 83 LSDWSIQQRIGFIYQRGTNKFPQDLKFWAMYLNYMKARGNQTSYKKIHNIYNQLLKLHPT 142
Query: 92 NHTLWCKYAEFEM-INKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137
N +W A++E ++ RN++ + P V +LWY+Y++ E
Sbjct: 143 NVDIWISCAKYEYEVHANFKSCRNIFQNGLRFNPDVPKLWYEYVKFE 189
Score = 45 (20.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 312 KVWISYAKFEASALSK 327
K+W Y KFE + ++K
Sbjct: 180 KLWYEYVKFELNFITK 195
>UNIPROTKB|F6RY07 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 OMA:PRSYKLW
GeneTree:ENSGT00550000075140 EMBL:DAAA02019501 IPI:IPI00700985
Ensembl:ENSBTAT00000015097 Uniprot:F6RY07
Length = 855
Score = 124 (48.7 bits), Expect = 0.00027, P = 0.00027
Identities = 48/181 (26%), Positives = 82/181 (45%)
Query: 51 SIRRVPGDTAVWINY-----AKWEGSQNEFDRARSMWELALEEDCRNH--TLWCKYAEFE 103
S+ + P + +W Y A++ G + +RAR ++E AL+ + TL+ YA+ E
Sbjct: 546 SLFKWPNVSDIWSTYLTKFIARYGG--RKLERARDLFEQALDGCPPKYAKTLYLLYAQLE 603
Query: 104 MINKFINHARNVWDRAVAVLPHVDQ--LWYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQ 160
HA V++RA + Q ++ YI R EI G V R I+ + + D+
Sbjct: 604 EEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYG-VTHTRSIYQKAIEVLSDE 662
Query: 161 QA---WLSYIKFELRYEQVELARQVFERLVQ-CHPNVVSS-WIKYAKFEMRRGEIDRARN 215
A L + E + +++ AR ++ Q C P + W + FE+R G D R
Sbjct: 663 HAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIRE 722
Query: 216 V 216
+
Sbjct: 723 M 723
>DICTYBASE|DDB_G0280363 [details] [associations]
symbol:DDB_G0280363 species:44689 "Dictyostelium
discoideum" [GO:0006396 "RNA processing" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00386 dictyBase:DDB_G0280363 GO:GO:0005622
EMBL:AAFI02000035 EMBL:AAFI02000036 GO:GO:0006396 Gene3D:1.25.40.10
RefSeq:XP_641155.1 RefSeq:XP_641400.1 ProteinModelPortal:Q54VF4
GeneID:8622534 GeneID:8622535 KEGG:ddi:DDB_G0280363
KEGG:ddi:DDB_G0280519 eggNOG:NOG282937 InParanoid:Q54VF5
ProtClustDB:CLSZ2497219 Uniprot:Q54VF4
Length = 1304
Score = 126 (49.4 bits), Expect = 0.00027, P = 0.00027
Identities = 44/185 (23%), Positives = 92/185 (49%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAE-FE 103
R F+ ++ VP ++ K E E++RA ++ E L ED + LW +E
Sbjct: 892 RKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAINIVEKGLFEDPKYGPLWFSALRLYE 951
Query: 104 MINK-FINHARNVWDRA-VAVLPHVD-QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160
+ F+ RN +RA AV V +++++ ++EE + N+ +R + + + P+
Sbjct: 952 KTSHGFLQSTRNTVERARQAVSREVTWKIYFEAAQIEERSKNLTLSRAAYVKSVELCPEN 1011
Query: 161 ---QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI--KYAKFEMRRGEIDRARN 215
+ WL + EL + + +AR++ R ++ P+ + S + +Y++ E G I+++R
Sbjct: 1012 LLWKVWLGGSRTELNADNICIARKLVFRALEEVPSKLRSLVLLEYSRLEEYAGNINKSRR 1071
Query: 216 VYERA 220
+ + A
Sbjct: 1072 ILKMA 1076
>ZFIN|ZDB-GENE-030131-4076 [details] [associations]
symbol:pdcd11 "programmed cell death 11"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00575 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 ZFIN:ZDB-GENE-030131-4076 GO:GO:0003723 GO:GO:0005622
GO:GO:0006396 Gene3D:1.25.40.10 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
HOGENOM:HOG000088607 HOVERGEN:HBG108419 OMA:LHLADIY
OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 EMBL:CR812943
IPI:IPI00817258 UniGene:Dr.76104 Ensembl:ENSDART00000074342
Ensembl:ENSDART00000124833 Uniprot:B8JIP9
Length = 1816
Score = 127 (49.8 bits), Expect = 0.00031, P = 0.00031
Identities = 50/226 (22%), Positives = 103/226 (45%)
Query: 7 RGAPIRKTAEQILRESQEHFGEQK-SVDPTELYDYRLHKRND--FEDSIRRVPGDTAVWI 63
+ P +K+ +++ +E Q EQK S EL D + N FE + P + +W+
Sbjct: 1511 KSKPAKKSRKELKQEQQNT--EQKLSKLEAELMDTSVRPDNSTAFERLLLSSPDSSLLWL 1568
Query: 64 NYAKWEGSQNEFDRARSMWELALE-----EDCRNHTLWCKYAEFEMINKFINHARNVWDR 118
Y + + ++AR++ E AL+ E+ +W E + + + V++R
Sbjct: 1569 QYMAFHLQATQIEQARAVAERALKTISFREEQEKLNIWVAMLNLENMYGTPDSLQKVFER 1628
Query: 119 AVAVLPHV---DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ 175
A+ + QL Y + E+I + + + R+ D+ +LSY F LR Q
Sbjct: 1629 AIQYCEPLLVYQQLADIYAKSEKIKEAESLYKSMVKRFRQ---DKAVYLSYGTFLLRQRQ 1685
Query: 176 VELARQVFERLVQCHPNV--VSSWIKYAKFEMRRGEIDRARNVYER 219
+ A + +R +Q + V ++A+ E + G ++A++++++
Sbjct: 1686 SDAANALLQRALQSLSSKEHVDLIARFARLEFQFGNSEKAKSMFDK 1731
>MGI|MGI:1914689 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10090 "Mus
musculus" [GO:0001824 "blastocyst development" evidence=IMP]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 MGI:MGI:1914689 GO:GO:0008380 GO:GO:0006397
GO:GO:0006351 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 CTD:56949
HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ EMBL:AK002890 EMBL:AK008628
EMBL:BC021341 IPI:IPI00120744 RefSeq:NP_080432.1 UniGene:Mm.23739
ProteinModelPortal:Q9DCD2 SMR:Q9DCD2 STRING:Q9DCD2
PhosphoSite:Q9DCD2 PaxDb:Q9DCD2 PRIDE:Q9DCD2
Ensembl:ENSMUST00000019614 GeneID:67439 KEGG:mmu:67439
UCSC:uc009kry.1 GeneTree:ENSGT00550000075140 InParanoid:Q9DCD2
NextBio:324566 Bgee:Q9DCD2 CleanEx:MM_XAB2 Genevestigator:Q9DCD2
GermOnline:ENSMUSG00000019470 Uniprot:Q9DCD2
Length = 855
Score = 123 (48.4 bits), Expect = 0.00035, P = 0.00035
Identities = 48/179 (26%), Positives = 80/179 (44%)
Query: 51 SIRRVPGDTAVWINY-AKWEGSQN--EFDRARSMWELALEEDCRNH--TLWCKYAEFEMI 105
S+ + P + +W Y K+ + +RAR ++E AL+ + TL+ YA+ E
Sbjct: 546 SLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE 605
Query: 106 NKFINHARNVWDRAVAVLPHVDQ--LWYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQQA 162
HA V+DRA + Q ++ YI R EI G V R I+ + + D+ A
Sbjct: 606 WGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYG-VTHTRGIYQKAIEVLSDEHA 664
Query: 163 ---WLSYIKFELRYEQVELARQVFERLVQ-CHPNVVSS-WIKYAKFEMRRGEIDRARNV 216
L + E + +++ AR ++ Q C P + W + FE+R G D R +
Sbjct: 665 REMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREM 723
>RGD|621217 [details] [associations]
symbol:Xab2 "XPA binding protein 2" species:10116 "Rattus
norvegicus" [GO:0001824 "blastocyst development" evidence=IEA;ISO]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=ISO;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
SMART:SM00386 RGD:621217 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
HOGENOM:HOG000176133 CTD:56949 HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ
GeneTree:ENSGT00550000075140 EMBL:AF277899 EMBL:BC081723
IPI:IPI00201089 RefSeq:NP_620809.1 UniGene:Rn.24921
ProteinModelPortal:Q99PK0 STRING:Q99PK0 Ensembl:ENSRNOT00000001309
GeneID:245976 KEGG:rno:245976 UCSC:RGD:621217 InParanoid:Q99PK0
NextBio:623254 Genevestigator:Q99PK0 GermOnline:ENSRNOG00000000988
Uniprot:Q99PK0
Length = 855
Score = 123 (48.4 bits), Expect = 0.00035, P = 0.00035
Identities = 48/179 (26%), Positives = 80/179 (44%)
Query: 51 SIRRVPGDTAVWINY-AKWEGSQN--EFDRARSMWELALEEDCRNH--TLWCKYAEFEMI 105
S+ + P + +W Y K+ + +RAR ++E AL+ + TL+ YA+ E
Sbjct: 546 SLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLLYAQLEEE 605
Query: 106 NKFINHARNVWDRAVAVLPHVDQ--LWYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQQA 162
HA V+DRA + Q ++ YI R EI G V R I+ + + D+ A
Sbjct: 606 WGLARHAMAVYDRATRAVEPAQQYDMFNIYIKRAAEIYG-VTHTRGIYQKAIEVLSDEHA 664
Query: 163 ---WLSYIKFELRYEQVELARQVFERLVQ-CHPNVVSS-WIKYAKFEMRRGEIDRARNV 216
L + E + +++ AR ++ Q C P + W + FE+R G D R +
Sbjct: 665 REMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIREM 723
>WB|WBGene00017768 [details] [associations]
symbol:F25B4.5 species:6239 "Caenorhabditis elegans"
[GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
SMART:SM00386 GO:GO:0009792 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GO:GO:0007281 EMBL:FO080538
GeneTree:ENSGT00390000005033 KO:K13217 PIR:T25725
RefSeq:NP_504495.1 ProteinModelPortal:Q22961 SMR:Q22961
STRING:Q22961 PaxDb:Q22961 EnsemblMetazoa:F25B4.5.1
EnsemblMetazoa:F25B4.5.2 GeneID:178955 KEGG:cel:CELE_F25B4.5
UCSC:F25B4.5.1 CTD:178955 WormBase:F25B4.5 eggNOG:NOG298273
HOGENOM:HOG000018990 InParanoid:Q22961 OMA:VLLELRY NextBio:903274
Uniprot:Q22961
Length = 710
Score = 89 (36.4 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 30/113 (26%), Positives = 43/113 (38%)
Query: 27 GEQKSVDPTELYDYR---LHKRNDFEDSIRRVPGDTAV---WINYAKWEGSQNEFDRARS 80
G Q+S DY+ L R P D A W+N ++ D AR
Sbjct: 61 GSQRSRSSRHGSDYKDTSLMTRPSVASHFGTPPIDVADFDNWVNILAKVDQSDDVDFARE 120
Query: 81 MWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKY 133
+ L + W KYAE+E I A+ VW++ + +P LW Y
Sbjct: 121 KYRSFLSRYPNCYGFWQKYAEYEKKMGNIAEAKAVWEKGIISIPLSIDLWLGY 173
Score = 79 (32.9 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 163 WLSYIKFELRYEQVELARQVFER-LVQCHPNVVSSWIKYAKFEMRRGEID-RARNVYERA 220
W+SY+ FE++ E + +F+R L+ C WIKYA++ + + ++R +Y +A
Sbjct: 387 WMSYLDFEIKEGHEERVKILFDRCLIPCSL-YEEFWIKYARWTWKTYKSKTKSREIYMKA 445
>UNIPROTKB|F1PLK8 [details] [associations]
symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
Uniprot:F1PLK8
Length = 1870
Score = 126 (49.4 bits), Expect = 0.00041, P = 0.00041
Identities = 45/205 (21%), Positives = 93/205 (45%)
Query: 21 ESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARS 80
+S+E Q+S + L K+ E + R+ + A+ ++ + S ++FDR
Sbjct: 1557 DSEEDNKPQQSTQKKSKKERMLEKQKA-EKELSRI--EEAL-MDPGRQPESADDFDR--- 1609
Query: 81 MWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQ-----LWYKYIR 135
L L + LW +Y F + I AR V +RA+ + ++ +W +
Sbjct: 1610 ---LLLSSP-NSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLN 1665
Query: 136 MEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVS 195
+E + G+ + +F+R + + + +L + E+ + A +++ R+++ +
Sbjct: 1666 LENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYNKSEKFQEAGELYNRMLKRFRQEKA 1725
Query: 196 SWIKYAKFEMRRGEIDRARNVYERA 220
WIKY F +RRG+ + V +RA
Sbjct: 1726 VWIKYGAFLLRRGQAGASHRVMQRA 1750
>TAIR|locus:2128751 [details] [associations]
symbol:EMB2770 "EMBRYO DEFECTIVE 2770" species:3702
"Arabidopsis thaliana" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA;IDA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0009409 "response to cold"
evidence=IMP] InterPro:IPR003107 InterPro:IPR010491
InterPro:IPR011990 InterPro:IPR013026 Pfam:PF06424 PROSITE:PS50293
SMART:SM00386 GO:GO:0005634 EMBL:CP002687 GO:GO:0009409
Gene3D:1.25.40.10 InterPro:IPR019955 PROSITE:PS50053 GO:GO:0000398
EMBL:AL161496 EMBL:AF071527 GO:GO:0019252 HOGENOM:HOG000116247
KO:K12855 OMA:IWLRAAY InterPro:IPR027108 PANTHER:PTHR11246:SF1
GO:GO:0009568 EMBL:AY059720 EMBL:AY142510 IPI:IPI00530735
PIR:E85043 RefSeq:NP_192252.1 UniGene:At.3947
ProteinModelPortal:Q9ZT71 SMR:Q9ZT71 STRING:Q9ZT71 PRIDE:Q9ZT71
EnsemblPlants:AT4G03430.1 GeneID:827925 KEGG:ath:AT4G03430
TAIR:At4g03430 InParanoid:Q9ZT71 PhylomeDB:Q9ZT71
ProtClustDB:CLSN2685941 Genevestigator:Q9ZT71 Uniprot:Q9ZT71
Length = 1029
Score = 123 (48.4 bits), Expect = 0.00044, P = 0.00044
Identities = 36/156 (23%), Positives = 67/156 (42%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121
W+ A + + AR+++ AL ++W K A+ E + + +AV
Sbjct: 628 WVADADECKKRGSIETARAIYAHALSVFLTKKSIWLKAAQLEKSHGSRESLDALLRKAVT 687
Query: 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELAR 180
+P + LW + + +AG+V AAR I P+ ++ WL+ K E ++ E AR
Sbjct: 688 YVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENKEPERAR 747
Query: 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNV 216
+ + + W+K A E G ++ R +
Sbjct: 748 MLLAKARE-RGGTERVWMKSAIVERELGNVEEERRL 782
Score = 120 (47.3 bits), Expect = 0.00093, P = 0.00093
Identities = 39/172 (22%), Positives = 76/172 (44%)
Query: 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110
++ VP +W+ AK + + AR++ + A + +W + E NK
Sbjct: 685 AVTYVPQAEVLWLMGAKEKWLAGDVPAARAILQEAYAAIPNSEEIWLAAFKLEFENKEPE 744
Query: 111 HARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKF 169
AR + +A +++W K +E GNV R + + + P + WL +
Sbjct: 745 RARMLLAKA-RERGGTERVWMKSAIVERELGNVEEERRLLNEGLKQFPTFFKLWLMLGQL 803
Query: 170 ELRYEQVELARQVFER-LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
E R++ +E AR+ ++ L C P+ + W+ A E + +++AR + A
Sbjct: 804 EERFKHLEQARKAYDTGLKHC-PHCIPLWLSLADLEEKVNGLNKARAILTTA 854
>UNIPROTKB|F1SCH5 [details] [associations]
symbol:XAB2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 KO:K12867 OMA:PRSYKLW
CTD:56949 GeneTree:ENSGT00550000075140 EMBL:CU929919
RefSeq:XP_003123199.1 UniGene:Ssc.48349 Ensembl:ENSSSCT00000014834
GeneID:100525328 KEGG:ssc:100525328 Uniprot:F1SCH5
Length = 855
Score = 122 (48.0 bits), Expect = 0.00045, P = 0.00045
Identities = 50/181 (27%), Positives = 83/181 (45%)
Query: 51 SIRRVPGDTAVWINY-----AKWEGSQNEFDRARSMWELALEEDCRNH--TLWCKYAEFE 103
S+ + P + +W Y A++ G + +RAR ++E AL+ + TL+ YA+ E
Sbjct: 546 SLFKWPNVSDIWSTYLTKFIARYGG--RKLERARDLFEQALDGCPPKYAKTLYLLYAQLE 603
Query: 104 MINKFINHARNVWDRAV-AVLPHVD-QLWYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQ 160
HA V++RA AV P ++ YI R EI G V R I+ + + D+
Sbjct: 604 EEWGLARHAMAVYERATRAVEPSQQYDMFNIYIKRAAEIYG-VTHTRGIYQKAIEVLSDE 662
Query: 161 QA---WLSYIKFELRYEQVELARQVFERLVQ-CHPNVVSS-WIKYAKFEMRRGEIDRARN 215
A L + E + +++ AR ++ Q C P + W + FE+R G D R
Sbjct: 663 HAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIRE 722
Query: 216 V 216
+
Sbjct: 723 M 723
>POMBASE|SPBC4B4.09 [details] [associations]
symbol:usp105 "U1 snRNP-associated protein Usp105"
species:4896 "Schizosaccharomyces pombe" [GO:0000243 "commitment
complex" evidence=ISO] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC;ISO] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISO]
[GO:0030627 "pre-mRNA 5'-splice site binding" evidence=ISO]
InterPro:IPR003107 SMART:SM00386 PomBase:SPBC4B4.09 EMBL:CU329671
GenomeReviews:CU329671_GR eggNOG:COG0457 GO:GO:0000243
GO:GO:0005685 GO:GO:0000395 KO:K13217 PIR:T40481 RefSeq:NP_596426.1
ProteinModelPortal:O74970 EnsemblFungi:SPBC4B4.09.1 GeneID:2540869
KEGG:spo:SPBC4B4.09 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 NextBio:20801985 Uniprot:O74970
Length = 612
Score = 111 (44.1 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 31/122 (25%), Positives = 56/122 (45%)
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLW 130
S+ + RS+++ L + W KYA+FE + ++++R +A +PH LW
Sbjct: 50 SKQAINTLRSVYDRFLGKYPLLFGYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLW 109
Query: 131 YKYIRME-EIAGNVAAARLIFDRWMHWTP----DQQAWLSYIKFELRYEQVELARQVFER 185
Y + E G+ R +F + + W Y++FE R E+ + Q+ ER
Sbjct: 110 TNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPFWDKYLEFEERQERPDNVFQLLER 169
Query: 186 LV 187
L+
Sbjct: 170 LI 171
Score = 53 (23.7 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 196 SWIKYAKFEMRRGEIDRARNVYER 219
+W KY FE G+ R ++YER
Sbjct: 284 NWRKYLDFEEVEGDFQRICHLYER 307
Score = 38 (18.4 bits), Expect = 0.00055, Sum P(3) = 0.00055
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 357 IYHQFATCLISSLSSSGV 374
I ++ A+C+ +S+S G+
Sbjct: 338 IIYERASCIFASISRPGI 355
>DICTYBASE|DDB_G0272374 [details] [associations]
symbol:prpf6 "pre-mRNA processing factor 6"
species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA;ISS] [GO:0046540 "U4/U6 x
U5 tri-snRNP complex" evidence=ISS] InterPro:IPR003107
InterPro:IPR010491 InterPro:IPR011990 InterPro:IPR013026
Pfam:PF06424 PROSITE:PS50293 SMART:SM00386 dictyBase:DDB_G0272374
GenomeReviews:CM000151_GR eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AAFI02000008 GO:GO:0000398 GO:GO:0046540 KO:K12855 OMA:IWLRAAY
InterPro:IPR027108 PANTHER:PTHR11246:SF1 RefSeq:XP_645169.1
ProteinModelPortal:Q55A15 STRING:Q55A15 EnsemblProtists:DDB0233221
GeneID:8618341 KEGG:ddi:DDB_G0272374 InParanoid:Q55A15
ProtClustDB:CLSZ2729243 Uniprot:Q55A15
Length = 1014
Score = 122 (48.0 bits), Expect = 0.00055, P = 0.00055
Identities = 35/162 (21%), Positives = 72/162 (44%)
Query: 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNV 115
P +VW+ A+ E + E A ++ + LW YA+ + I+ + AR +
Sbjct: 567 PTKKSVWLKVAQLEKQHGTKETLDQTLEKATQKCPQYENLWLMYAKEKWISGDVAKAREI 626
Query: 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL--SYIKFELRY 173
+A P + +W +++E + AAR + + ++ W+ + ++ EL
Sbjct: 627 LAQAFKFNPGSENIWVAAVKIESEMNELRAARNLLKKAREIAGTERIWMKSALLERELGG 686
Query: 174 EQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARN 215
+Q +L + E+ +Q +PN W+ A+ E R+ + N
Sbjct: 687 DQ-KLELSLIEQGLQKYPNSFKLWLMKAQLEERQAIANHQNN 727
>ASPGD|ASPL0000046692 [details] [associations]
symbol:AN1635 species:162425 "Emericella nidulans"
[GO:0006396 "RNA processing" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 EMBL:BN001307
GO:GO:0005622 GO:GO:0006396 eggNOG:COG0457 Gene3D:1.25.40.10
EMBL:AACD01000026 KO:K13217 HOGENOM:HOG000189748 OMA:ARYFERY
OrthoDB:EOG4DNJD8 RefSeq:XP_659239.1 ProteinModelPortal:Q5BCU5
EnsemblFungi:CADANIAT00008273 GeneID:2874721 KEGG:ani:AN1635.2
Uniprot:Q5BCU5
Length = 588
Score = 118 (46.6 bits), Expect = 0.00076, P = 0.00076
Identities = 33/127 (25%), Positives = 57/127 (44%)
Query: 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIR-MEEIAGNVAAARLIFDRWM 154
W KY +FE + +++R + H D+ W +Y R M G R I+ R
Sbjct: 280 WRKYLDFEEAEGSYARIQFLYERCLVTCAHYDEFWQRYARWMSAQPGKEEDVRNIYQRAS 339
Query: 155 H-WTP--DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEID 211
+ + P + L Y FE +V +A+++ E ++ PN V + + A R G ++
Sbjct: 340 YLYVPIANPATRLQYAYFEEMCGRVSVAKEIHEAILINIPNHVETIVSLANMCRRHGGLE 399
Query: 212 RARNVYE 218
A VY+
Sbjct: 400 AAIEVYK 406
>CGD|CAL0000714 [details] [associations]
symbol:orf19.2330 species:5476 "Candida albicans" [GO:0034388
"Pwp2p-containing subcomplex of 90S preribosome" evidence=IEA]
[GO:0032040 "small-subunit processome" evidence=IEA] [GO:0030515
"snoRNA binding" evidence=IEA] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
evidence=IEA] [GO:0000447 "endonucleolytic cleavage in ITS1 to
separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0000480 "endonucleolytic cleavage in 5'-ETS of tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0036170 "filamentous growth of a population of unicellular
organisms in response to starvation" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0071216 "cellular
response to biotic stimulus" evidence=IMP] InterPro:IPR003107
InterPro:IPR011990 SMART:SM00386 CGD:CAL0000714 GO:GO:0071216
GO:GO:0036180 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000114 EMBL:AACQ01000113
eggNOG:COG5191 KO:K14557 InterPro:IPR013949 Pfam:PF08640
RefSeq:XP_713935.1 RefSeq:XP_713993.1 ProteinModelPortal:Q59WH2
STRING:Q59WH2 GeneID:3644384 GeneID:3644449 KEGG:cal:CaO19.2330
KEGG:cal:CaO19.9866 Uniprot:Q59WH2
Length = 431
Score = 116 (45.9 bits), Expect = 0.00079, P = 0.00079
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 115 VWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRY 173
++DRA P +LW +Y++ + G + ++ R + P AWLS K+E
Sbjct: 99 IFDRATRRYPGETELWSQYLKFAKSNGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFET 158
Query: 174 E-QVELARQVFERLVQCHPNVVSSWIKYAKFEM 205
+ AR +F+R ++ + + W+ YA+FE+
Sbjct: 159 NGNAKGARVLFQRGLRLNSESLELWLNYAQFEL 191
>UNIPROTKB|Q59WH2 [details] [associations]
symbol:UTP6 "Potential U3 snoRNP protein Utp6p"
species:237561 "Candida albicans SC5314" [GO:0009267 "cellular
response to starvation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 CGD:CAL0000714
GO:GO:0071216 GO:GO:0036180 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 GO:GO:0009267 GO:GO:0036170 EMBL:AACQ01000114
EMBL:AACQ01000113 eggNOG:COG5191 KO:K14557 InterPro:IPR013949
Pfam:PF08640 RefSeq:XP_713935.1 RefSeq:XP_713993.1
ProteinModelPortal:Q59WH2 STRING:Q59WH2 GeneID:3644384
GeneID:3644449 KEGG:cal:CaO19.2330 KEGG:cal:CaO19.9866
Uniprot:Q59WH2
Length = 431
Score = 116 (45.9 bits), Expect = 0.00079, P = 0.00079
Identities = 25/93 (26%), Positives = 47/93 (50%)
Query: 115 VWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRY 173
++DRA P +LW +Y++ + G + ++ R + P AWLS K+E
Sbjct: 99 IFDRATRRYPGETELWSQYLKFAKSNGAIKVIYKVYSRLLQLQPRNINAWLSAAKYEFET 158
Query: 174 E-QVELARQVFERLVQCHPNVVSSWIKYAKFEM 205
+ AR +F+R ++ + + W+ YA+FE+
Sbjct: 159 NGNAKGARVLFQRGLRLNSESLELWLNYAQFEL 191
>UNIPROTKB|F5H315 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0001824 "blastocyst
development" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
PROSITE:PS50293 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0001824
EMBL:AC008763 HGNC:HGNC:14089 ChiTaRS:XAB2 IPI:IPI01015328
ProteinModelPortal:F5H315 SMR:F5H315 Ensembl:ENST00000534844
ArrayExpress:F5H315 Bgee:F5H315 Uniprot:F5H315
Length = 852
Score = 119 (46.9 bits), Expect = 0.00095, P = 0.00095
Identities = 47/181 (25%), Positives = 82/181 (45%)
Query: 51 SIRRVPGDTAVWINY-----AKWEGSQNEFDRARSMWELALEEDCRNH--TLWCKYAEFE 103
S+ + P + +W Y A++ G + +RAR ++E AL+ + TL+ YA+ E
Sbjct: 543 SLFKWPNVSDIWSTYLTKFIARYGG--RKLERARDLFEQALDGCPPKYAKTLYLLYAQLE 600
Query: 104 MINKFINHARNVWDRAVAVLPHVDQ--LWYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQ 160
HA V++RA + Q ++ YI R EI G V R I+ + + D+
Sbjct: 601 EEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYG-VTHTRGIYQKAIEVLSDE 659
Query: 161 QA---WLSYIKFELRYEQVELARQVFERLVQ-CHPNVVSS-WIKYAKFEMRRGEIDRARN 215
A L + E + +++ AR ++ Q C P + W + FE+R G D +
Sbjct: 660 HAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKE 719
Query: 216 V 216
+
Sbjct: 720 M 720
>UNIPROTKB|Q9HCS7 [details] [associations]
symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
"Homo sapiens" [GO:0001824 "blastocyst development" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IC] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
InterPro:IPR019734 SMART:SM00386 GO:GO:0005654 GO:GO:0006351
Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 EMBL:AB026111
EMBL:AF226051 EMBL:AF258567 EMBL:AF547265 EMBL:BC007208
EMBL:BC008778 EMBL:AK074035 EMBL:AB033003 IPI:IPI00163084
RefSeq:NP_064581.2 UniGene:Hs.9822 ProteinModelPortal:Q9HCS7
SMR:Q9HCS7 IntAct:Q9HCS7 MINT:MINT-1475513 STRING:Q9HCS7
PhosphoSite:Q9HCS7 DMDM:25091548 PaxDb:Q9HCS7 PeptideAtlas:Q9HCS7
PRIDE:Q9HCS7 DNASU:56949 Ensembl:ENST00000358368 GeneID:56949
KEGG:hsa:56949 UCSC:uc002mgx.3 CTD:56949 GeneCards:GC19M007684
HGNC:HGNC:14089 MIM:610850 neXtProt:NX_Q9HCS7 PharmGKB:PA134905925
HOVERGEN:HBG024066 InParanoid:Q9HCS7 OrthoDB:EOG4G4GPQ ChiTaRS:XAB2
GenomeRNAi:56949 NextBio:62545 ArrayExpress:Q9HCS7 Bgee:Q9HCS7
CleanEx:HS_XAB2 Genevestigator:Q9HCS7 GermOnline:ENSG00000076924
Uniprot:Q9HCS7
Length = 855
Score = 119 (46.9 bits), Expect = 0.00095, P = 0.00095
Identities = 47/181 (25%), Positives = 82/181 (45%)
Query: 51 SIRRVPGDTAVWINY-----AKWEGSQNEFDRARSMWELALEEDCRNH--TLWCKYAEFE 103
S+ + P + +W Y A++ G + +RAR ++E AL+ + TL+ YA+ E
Sbjct: 546 SLFKWPNVSDIWSTYLTKFIARYGG--RKLERARDLFEQALDGCPPKYAKTLYLLYAQLE 603
Query: 104 MINKFINHARNVWDRAVAVLPHVDQ--LWYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQ 160
HA V++RA + Q ++ YI R EI G V R I+ + + D+
Sbjct: 604 EEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYG-VTHTRGIYQKAIEVLSDE 662
Query: 161 QA---WLSYIKFELRYEQVELARQVFERLVQ-CHPNVVSS-WIKYAKFEMRRGEIDRARN 215
A L + E + +++ AR ++ Q C P + W + FE+R G D +
Sbjct: 663 HAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRHGNEDTIKE 722
Query: 216 V 216
+
Sbjct: 723 M 723
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.133 0.409 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 476 415 0.00081 118 3 11 22 0.39 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 65
No. of states in DFA: 629 (67 KB)
Total size of DFA: 306 KB (2155 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.75u 0.09s 29.84t Elapsed: 00:00:02
Total cpu time: 29.77u 0.10s 29.87t Elapsed: 00:00:02
Start: Fri May 10 18:23:53 2013 End: Fri May 10 18:23:55 2013