BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039282
(476 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P63155|CRNL1_RAT Crooked neck-like protein 1 OS=Rattus norvegicus GN=Crnkl1 PE=2
SV=1
Length = 690
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 161/372 (43%), Positives = 211/372 (56%), Gaps = 61/372 (16%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSIRRVP 56
KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+IR+
Sbjct: 19 KNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNIRKNR 78
Query: 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVW 116
+ WI YA+WE S E RARS++E AL+ D RN TLW KYAE EM N+ +NHARN+W
Sbjct: 79 TVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIW 138
Query: 117 DRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQV 176
DRA+ LP V+Q WYKY MEE+ GNVA AR +F+RWM W P++QAW SYI FELRY++V
Sbjct: 139 DRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEV 198
Query: 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGA 236
E AR ++ER V HP V +WIKYA+FE + AR VYERA+E GD D
Sbjct: 199 ERARTIYERFVLVHP-AVKNWIKYARFEEKHAYFAHARKVYERAVE---FFGDEHMD--- 251
Query: 237 EQLFVAFAEFEERYKE---------------SESEA---------LRKEFGDWVLIEDAI 272
E L+VAFA+FEE KE S+ EA K+FGD IED I
Sbjct: 252 EHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDII 311
Query: 273 VGKGKAPKDKA-------------YIHFEKSQGERERRRALYERLVERT----------K 309
V K + ++ Y+ +S E + R +YER + +
Sbjct: 312 VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKR 371
Query: 310 HLKVWISYAKFE 321
++ +W++YA +E
Sbjct: 372 YIYLWVNYALYE 383
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 198/442 (44%), Gaps = 103/442 (23%)
Query: 44 KRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDC---------RNHT 94
+R +E+ ++ P + W +Y + S E D R ++E A+ R
Sbjct: 315 RRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIY 374
Query: 95 LWCKYAEFEMIN-KFINHARNVWDRAVAVLPH----VDQLWYKYIRMEEIAGNVAAARLI 149
LW YA +E + K R V+ ++ ++PH ++W Y + E N+ AR
Sbjct: 375 LWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRA 434
Query: 150 FDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209
+ P + + YI+ EL+ + + R+++E+ ++ P +SWIK+A+ E G+
Sbjct: 435 LGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 494
Query: 210 IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIE 269
I+RAR +YE A+ + D E L W
Sbjct: 495 IERARAIYELAISQPRLDM--------------------------PEVL------W---- 518
Query: 270 DAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDG 329
K+YI FE Q E ER R LY +L++RT+H+KVWIS+A+FE S+ K+G
Sbjct: 519 ------------KSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELSS-GKEG 565
Query: 330 GNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEM 389
S+ R+ + + C E
Sbjct: 566 ----------------SVAKCRQIYEEANKTMRNC-----------------------EE 586
Query: 390 MEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFP 449
EER+MLLE W + E FG + D V ++P+K+KKRR++ +D+G AG+EEY DY+FP
Sbjct: 587 KEERLMLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFP 646
Query: 450 EE-SQKTNFKILEAASKWIKKK 470
E+ + + N K+L A W K++
Sbjct: 647 EDAANQPNLKLLAMAKLWKKQQ 668
>sp|P63154|CRNL1_MOUSE Crooked neck-like protein 1 OS=Mus musculus GN=Crnkl1 PE=2 SV=1
Length = 690
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 161/372 (43%), Positives = 211/372 (56%), Gaps = 61/372 (16%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSIRRVP 56
KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+IR+
Sbjct: 19 KNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNIRKNR 78
Query: 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVW 116
+ WI YA+WE S E RARS++E AL+ D RN TLW KYAE EM N+ +NHARN+W
Sbjct: 79 TVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIW 138
Query: 117 DRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQV 176
DRA+ LP V+Q WYKY MEE+ GNVA AR +F+RWM W P++QAW SYI FELRY++V
Sbjct: 139 DRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEV 198
Query: 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGA 236
E AR ++ER V HP V +WIKYA+FE + AR VYERA+E GD D
Sbjct: 199 ERARTIYERFVLVHP-AVKNWIKYARFEEKHAYFAHARKVYERAVE---FFGDEHMD--- 251
Query: 237 EQLFVAFAEFEERYKE---------------SESEA---------LRKEFGDWVLIEDAI 272
E L+VAFA+FEE KE S+ EA K+FGD IED I
Sbjct: 252 EHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDII 311
Query: 273 VGKGKAPKDKA-------------YIHFEKSQGERERRRALYERLVERT----------K 309
V K + ++ Y+ +S E + R +YER + +
Sbjct: 312 VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKR 371
Query: 310 HLKVWISYAKFE 321
++ +W++YA +E
Sbjct: 372 YIYLWVNYALYE 383
Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/442 (27%), Positives = 198/442 (44%), Gaps = 103/442 (23%)
Query: 44 KRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDC---------RNHT 94
+R +E+ ++ P + W +Y + S E D R ++E A+ R
Sbjct: 315 RRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYIY 374
Query: 95 LWCKYAEFEMIN-KFINHARNVWDRAVAVLPH----VDQLWYKYIRMEEIAGNVAAARLI 149
LW YA +E + K R V+ ++ ++PH ++W Y + E N+ AR
Sbjct: 375 LWVNYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQKNLPFARRA 434
Query: 150 FDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209
+ P + + YI+ EL+ + + R+++E+ ++ P +SWIK+A+ E G+
Sbjct: 435 LGTSIGKCPKNKLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 494
Query: 210 IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIE 269
I+RAR +YE A+ + D E L W
Sbjct: 495 IERARAIYELAISQPRLDM--------------------------PEVL------W---- 518
Query: 270 DAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDG 329
K+YI FE Q E ER R LY +L++RT+H+KVWIS+A+FE S+ K+G
Sbjct: 519 ------------KSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELSS-GKEG 565
Query: 330 GNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEM 389
S+ R+ + + C E
Sbjct: 566 ----------------SVAKCRQIYEEANKTMRNC-----------------------EE 586
Query: 390 MEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFP 449
EER+MLLE W + E FG + D V ++P+K+KKRR++ +D+G AG+EEY DY+FP
Sbjct: 587 KEERLMLLESWRSFEDEFGTVSDKERVDKLMPEKVKKRRKVQADDGSDAGWEEYYDYIFP 646
Query: 450 EE-SQKTNFKILEAASKWIKKK 470
E+ + + N K+L A W K++
Sbjct: 647 EDAANQPNLKLLAMAKLWKKQQ 668
>sp|Q9BZJ0|CRNL1_HUMAN Crooked neck-like protein 1 OS=Homo sapiens GN=CRNKL1 PE=1 SV=4
Length = 848
Score = 259 bits (663), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 160/372 (43%), Positives = 209/372 (56%), Gaps = 61/372 (16%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSIRRVP 56
KN A ++ TAEQ+LRE++E E QK D EL DY+L KR FED+IR+
Sbjct: 180 KNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDYKLRKRKTFEDNIRKNR 239
Query: 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVW 116
+ WI YA+WE S E RARS++E AL+ D RN TLW KYAE EM N+ +NHARN+W
Sbjct: 240 TVISNWIKYAQWEESLKEIQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIW 299
Query: 117 DRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQV 176
DRA+ LP V+Q WYKY MEE+ GNVA AR +F+RWM W P++QAW SYI FELRY++V
Sbjct: 300 DRAITTLPRVNQFWYKYTYMEEMLGNVAGARQVFERWMEWQPEEQAWHSYINFELRYKEV 359
Query: 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGA 236
+ AR ++ER V HP+ V +WIKYA+FE + AR VYERA+E GD D
Sbjct: 360 DRARTIYERFVLVHPD-VKNWIKYARFEEKHAYFAHARKVYERAVE---FFGDEHMD--- 412
Query: 237 EQLFVAFAEFEERYKESES------------------------EALRKEFGDWVLIEDAI 272
E L+VAFA+FEE KE E K+FGD IED I
Sbjct: 413 EHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRGIEDII 472
Query: 273 VGKGKAPKDKA-------------YIHFEKSQGERERRRALYERLVERT----------K 309
V K + ++ Y+ +S E E R +YER + +
Sbjct: 473 VSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKR 532
Query: 310 HLKVWISYAKFE 321
++ +WI+YA +E
Sbjct: 533 YIYLWINYALYE 544
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 123/442 (27%), Positives = 198/442 (44%), Gaps = 103/442 (23%)
Query: 44 KRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDC---------RNHT 94
+R +E+ ++ P + W +Y + S E + R ++E A+ R
Sbjct: 476 RRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYIY 535
Query: 95 LWCKYAEFEMIN-KFINHARNVWDRAVAVLPH----VDQLWYKYIRMEEIAGNVAAARLI 149
LW YA +E + K R V+ ++ ++PH ++W Y + E N++ AR
Sbjct: 536 LWINYALYEELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQKNLSLARRA 595
Query: 150 FDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209
+ P + + YI+ EL+ + + R+++E+ ++ P +SWIK+A+ E G+
Sbjct: 596 LGTSIGKCPKNKLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 655
Query: 210 IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIE 269
IDRAR +YE A+ + D E L W
Sbjct: 656 IDRARAIYELAISQPRLDM--------------------------PEVL------W---- 679
Query: 270 DAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDG 329
K+YI FE Q E ER R LY RL++RT+H+KVWIS+A+FE S+ K+G
Sbjct: 680 ------------KSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSS-GKEG 726
Query: 330 GNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEM 389
S+ R+ + + C E
Sbjct: 727 ----------------SLTKCRQIYEEANKTMRNC-----------------------EE 747
Query: 390 MEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFP 449
EER+MLLE W + E FG D V ++P+K+KKRR++ +D+G AG+EEY DY+FP
Sbjct: 748 KEERLMLLESWRSFEEEFGTASDKERVDKLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFP 807
Query: 450 EE-SQKTNFKILEAASKWIKKK 470
E+ + + N K+L A W K++
Sbjct: 808 EDAANQPNLKLLAMAKLWKKQQ 829
>sp|Q54XP4|CRNL1_DICDI Crooked neck-like protein 1 OS=Dictyostelium discoideum GN=crnkl1
PE=3 SV=1
Length = 705
Score = 254 bits (649), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 158/379 (41%), Positives = 210/379 (55%), Gaps = 62/379 (16%)
Query: 4 KNPRGAPIRKTAEQILRESQEH-------FGEQKSVDPTELYDYRLHKRNDFEDSIRRVP 56
KN AP++ TAEQILR + E+ +Q D EL DYRL KR +E + R
Sbjct: 13 KNKSAAPVQITAEQILRVAHENQQTLPKAPPKQVITDQEELEDYRLRKRQQYESLLGRNR 72
Query: 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVW 116
A++I YA WE SQ + RARS++E L+ D R T+W KYAE EM NK IN ARN+W
Sbjct: 73 KTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHRIPTVWIKYAEMEMKNKNINLARNIW 132
Query: 117 DRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQV 176
DRAV +LP V QLW+KY ME++ GN AAR IF+RWM W P+ QAW SY+KFE R +
Sbjct: 133 DRAVCLLPRVSQLWFKYTFMEDMLGNYPAARAIFERWMQWKPEPQAWNSYLKFEQRLKLF 192
Query: 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGA 236
E R +FE+ + HP + +WIKY KFE R G I+ AR +++RA+E DG+D
Sbjct: 193 ENTRLIFEKYILVHP-YIKTWIKYTKFEERLGNIENARTIFQRAIE--FLGEDGND---- 245
Query: 237 EQLFVAFAEFEERYKESES------------------------EALRKEFGDWVLIEDAI 272
EQLF+AFA+FEE+YKE E K+ GD + IED +
Sbjct: 246 EQLFIAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGDRIGIEDVV 305
Query: 273 VGKGKAPKDKA-------------YIHFEKSQGERERRRALYERLV------ERTKHLK- 312
+GK + ++ Y+ E+ GE E+ R +YER + KH K
Sbjct: 306 LGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHWKR 365
Query: 313 ---VWISYAKFEASALSKD 328
+WI+YA FE +SKD
Sbjct: 366 YIYLWINYALFE-ELISKD 383
Score = 130 bits (327), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 117/439 (26%), Positives = 200/439 (45%), Gaps = 80/439 (18%)
Query: 44 KRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELAL----EEDCRNH-----T 94
KR +E+ I++ + +W +Y K E E ++ R ++E ++ + + H
Sbjct: 309 KRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTNEKKHWKRYIY 368
Query: 95 LWCKYAEFE-MINKFINHARNVWDRAVAVLPH----VDQLWYKYIRMEEIAGNVAAARLI 149
LW YA FE +I+K + AR+V+ + ++PH ++W Y E N+ ARLI
Sbjct: 369 LWINYALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDKARLI 428
Query: 150 FDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209
+ + + P + + YI E+ + R ++E+ ++ P+ +W K+A+ E GE
Sbjct: 429 YGQAIGRNPKSKIFDQYIHLEIELGNFDRVRTLYEKYLEIMPDNCDAWCKFAQLETELGE 488
Query: 210 IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIE 269
RAR ++E A+++ + D E + F+ +SE K+F D+V
Sbjct: 489 TVRARAIFELAIQQ----PNLDRPEVVWKDFI------------DSEIQLKQF-DFV--- 528
Query: 270 DAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDG 329
+ LY +L+E+T H+KVWI + KF S KD
Sbjct: 529 ----------------------------KQLYRKLLEKTNHVKVWIGFIKFVHSI--KDK 558
Query: 330 GNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEM 389
+ E G + +K + + +F I +K+ +
Sbjct: 559 QQQKQRQQQQEE------DGDSNTTKKDGGDDDNNDDINKPTREIF---IEAHKSLSNSD 609
Query: 390 MEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFP 449
EER++LLE W E++FG +N V +P+++ KRR + NG G EEY DY+FP
Sbjct: 610 KEERLLLLESWKEFEQTFGNQETLNQVLKKIPQRVIKRR--SDGNG---GIEEYFDYIFP 664
Query: 450 EE--SQKTNFKILEAASKW 466
EE S +T+ K+LEAA +W
Sbjct: 665 EEEKSTQTSLKLLEAAQRW 683
>sp|P17886|CRN_DROME Protein crooked neck OS=Drosophila melanogaster GN=crn PE=2 SV=2
Length = 702
Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/372 (40%), Positives = 214/372 (57%), Gaps = 61/372 (16%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFGE-------QKSVDPTELYDYRLHKRNDFEDSIRRVP 56
KN A ++ TAEQ+LRE++E E QK DP EL DY+ KR FED++R+
Sbjct: 14 KNKAPAEVQITAEQLLREAKERDLEILPPPPKQKISDPAELADYQQRKRKTFEDNLRKNR 73
Query: 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVW 116
+ WI YA+WE Q E RARS+WE AL+ + RN TLW KYAE EM NK +NHARN+W
Sbjct: 74 MVVSHWIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLW 133
Query: 117 DRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQV 176
DRAV ++P V+Q WYKY MEE+ NVA AR +F+RWM W P++QAW +Y+ FELRY+++
Sbjct: 134 DRAVTIMPRVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEI 193
Query: 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGA 236
+ AR+++ER V HP+ V +WIK+A+FE G I +R V+ERA+E DD
Sbjct: 194 DRAREIYERFVYVHPD-VKNWIKFARFEESHGFIHGSRRVFERAVEF------FGDDYIE 246
Query: 237 EQLFVAFAEFEERYKESESEAL------------------------RKEFGDWVLIEDAI 272
E+LF+AFA FEE KE + + K++GD IED I
Sbjct: 247 ERLFIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVI 306
Query: 273 VGKGKAPKDKA-------------YIHFEKSQGERERRRALYERLVERT----------K 309
V K K ++ Y+ +++G+R++ R YER + +
Sbjct: 307 VSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEKNFWRR 366
Query: 310 HLKVWISYAKFE 321
++ +WI+YA +E
Sbjct: 367 YIYLWINYALYE 378
Score = 142 bits (359), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 137/462 (29%), Positives = 209/462 (45%), Gaps = 92/462 (19%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRA- 119
++I +A++E Q E DRAR +++ AL+ ++ T E+ + H + DRA
Sbjct: 249 LFIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQ-------ELFKAYTKHEKKYGDRAG 301
Query: 120 ----------------VAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP---DQ 160
VA P W+ Y+R+ E G+ R ++R + P ++
Sbjct: 302 IEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAISNVPPANEK 361
Query: 161 QAWLSYIKF--------ELRYEQVELARQVFERLVQCHPN----VVSSWIKYAKFEMRRG 208
W YI EL E E RQ+++ ++ P+ W+ YA+FE+R
Sbjct: 362 NFWRRYIYLWINYALYEELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIRCK 421
Query: 209 EIDRARNVYERAL----EKKLADGDGDDD------EGAEQLFVAFAEFEER-----YKES 253
E+ RAR A+ KL G D + E L+ F EF K +
Sbjct: 422 ELQRARKALGLAIGMCPRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFA 481
Query: 254 ESEALRKEFGDWVLIEDAIVGKGKAPKD----KAYIHFEKSQGERERRRALYERLVERTK 309
E E L + I + V + + KAYI FE + GE E R LYERL+ERT+
Sbjct: 482 ELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYIDFEVALGETELARQLYERLLERTQ 541
Query: 310 HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSL 369
H+KVW+S+AKFE D G PD A+L +++ ARR + + A ++ L
Sbjct: 542 HVKVWMSFAKFEMGLSHGDSG-PD---AEL------NVQLARRIYER-----ANEMLRQL 586
Query: 370 SSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRRQ 429
E RV+LLE W + ER + ++ V +P+++KKR++
Sbjct: 587 GDK------------------ESRVLLLEAWRDFERDASDSQEMQKVMDKMPRRIKKRQK 628
Query: 430 IASDNGLSAGYEEYIDYLFPE-ESQKTNFKILEAASKWIKKK 470
I SDNG+ G+EE DY+FPE E + N K+L AA W +K
Sbjct: 629 IVSDNGVEEGWEEVFDYIFPEDEMARPNLKLLAAAKMWKTQK 670
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 82/164 (50%), Gaps = 23/164 (14%)
Query: 163 WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222
W+ Y ++E + ++++ AR ++ER + V+ W+KYA+ EM+ +++ ARN+++RA+
Sbjct: 79 WIKYAQWEEQQQEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVT 138
Query: 223 KKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDK 282
Q + + EE + R+ F W+ + P+++
Sbjct: 139 IM---------PRVNQFWYKYTYMEEMLENVA--GARQVFERWMEWQ---------PEEQ 178
Query: 283 A---YIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEAS 323
A Y++FE E +R R +YER V +K WI +A+FE S
Sbjct: 179 AWQTYVNFELRYKEIDRAREIYERFVYVHPDVKNWIKFARFEES 222
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 13/109 (11%)
Query: 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEFEMINKFINHAR 113
P + W+ +A+ E + DRAR+++ELA+++ + LW Y +FE+ AR
Sbjct: 471 PENCVTWMKFAELENLLGDTDRARAIFELAVQQPRLDMPELLWKAYIDFEVALGETELAR 530
Query: 114 NVWDRAVAVLPHVDQLWYKYIRME----------EIAGNVAAARLIFDR 152
+++R + HV ++W + + E + NV AR I++R
Sbjct: 531 QLYERLLERTQHV-KVWMSFAKFEMGLSHGDSGPDAELNVQLARRIYER 578
>sp|Q4PB37|CLF1_USTMA Pre-mRNA-splicing factor CLF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=CLF1 PE=3 SV=1
Length = 781
Score = 230 bits (587), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 142/391 (36%), Positives = 212/391 (54%), Gaps = 76/391 (19%)
Query: 4 KNPRGAPIRKTAEQILRESQEH------FGEQKSVDPTELYDYRLHKRNDFEDSIRRVPG 57
KN API+ +AEQ+LRE+QE QK D EL +YR +R++FED +RR
Sbjct: 9 KNRAPAPIQISAEQLLREAQERQEAPASAPVQKIEDYEELEEYRGRRRSEFEDRLRRNGL 68
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+ + WI YA WE SQ E DR RS++E AL+ + + LW +Y E E+ + + HARN++D
Sbjct: 69 NMSTWIKYASWEASQGEMDRCRSIYERALDVEPHHLPLWLRYTEQELKMRNVQHARNLYD 128
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
RAV++LP +DQLWYKY+ +EE+ GN+ R +F+RWM W P+++AW +YI E+RY++++
Sbjct: 129 RAVSILPRIDQLWYKYVHLEELLGNIPGTRQVFERWMKWEPEEKAWHAYINLEVRYDELD 188
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAE 237
A ++ER V CHP V WI++AKFE RG +++AR V++ AL+ D D E A+
Sbjct: 189 RASAIWERCVTCHP-VPKQWIRWAKFEEDRGNLEKARIVFQMALD--YIGEDEDAMEKAQ 245
Query: 238 QLFVAFAEFEERYKE-----------------SESEAL-------RKEFGDWVLIEDAIV 273
+F AFA+ E R KE S+SE + K+FG +ED ++
Sbjct: 246 SVFTAFAKMETRLKEYERARVIYKYALERLPRSKSEGIYSSYTRFEKQFGTMNSVEDTVI 305
Query: 274 GK--------------GKAPKD------------KAYIHFEKSQGERE-------RRRAL 300
GK G AP D AY + G ++ R R +
Sbjct: 306 GKRRIQYEEELAAQEAGGAPADYDTWFDYSRLEEDAYRALLATGGSQDQLQQAVKRVREV 365
Query: 301 YERLVERT----------KHLKVWISYAKFE 321
YER + + +++ +W+ YA FE
Sbjct: 366 YERAIAQVPSSQEKRDWRRYIFLWLRYALFE 396
Score = 119 bits (298), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 126/476 (26%), Positives = 210/476 (44%), Gaps = 86/476 (18%)
Query: 23 QEHFGEQKSVDPTELYDYRLHKRNDFE-DSIRRVPGDTAVWINYAKWE-----------G 70
++ FG SV+ T + R+ + P D W +Y++ E G
Sbjct: 291 EKQFGTMNSVEDTVIGKRRIQYEEELAAQEAGGAPADYDTWFDYSRLEEDAYRALLATGG 350
Query: 71 SQNEFD----RARSMWELALEE--------DCRNHT-LWCKYAEFEMIN-KFINHARNVW 116
SQ++ R R ++E A+ + D R + LW +YA FE I+ + + R ++
Sbjct: 351 SQDQLQQAVKRVREVYERAIAQVPSSQEKRDWRRYIFLWLRYALFEEIDTRDYDRTREIY 410
Query: 117 DRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQV 176
A+A++PH R F + W+ Y +FE+R ++
Sbjct: 411 KAAIALVPH--------------------RRFTF---------AKLWVQYARFEVRRLEL 441
Query: 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGA 236
AR++ + P + + Y + E+ E DRAR +YE+ALE D
Sbjct: 442 TAARKILGAAIGMAPKL-KLFSSYIELEVSLKEFDRARKIYEKALEW---------DPTN 491
Query: 237 EQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKD------KAYIHFEKS 290
Q +V FAE E+ +++ E G + A G+ D KAYI FE
Sbjct: 492 SQTWVRFAELEKNLFDTDRARALFELG----VGQAEGGEASGGLDMPEIVWKAYIDFEFE 547
Query: 291 QGERERRRALYERLVERTKHLKVWISYAKFE---ASALSKDGGNPDLSEADLCERKKQSI 347
+ E E+ ALYERL+ ++ H+KVWISYA + A+A+ +D D +
Sbjct: 548 EREWEKVDALYERLLAKSGHVKVWISYALSKINRATAIEEDEDEEDDDHDHDDDMAATPS 607
Query: 348 RGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSF 407
R + Q + L S S+ +F++ + K+ + + +ERV LLE W + E+
Sbjct: 608 RELTEEEEALRQQRRSALAS--SAREIFQRAYDNLKSRS--LKDERVALLESWKSFEQQH 663
Query: 408 GELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEESQ--KTNFKILE 461
G ++ V+A P+ +KKRRQ+ ++ EEY D +FP++ K FK+L+
Sbjct: 664 GSAETLSRVEAKFPRVVKKRRQV--EDSADGAMEEYYDLIFPDDQDEGKGAFKLLQ 717
>sp|Q4WT84|CLF1_ASPFU Pre-mRNA-splicing factor clf1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=clf1 PE=3
SV=1
Length = 676
Score = 225 bits (573), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 141/346 (40%), Positives = 197/346 (56%), Gaps = 34/346 (9%)
Query: 4 KNPRGAPIRKTAEQILRESQE------HFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPG 57
KN API+ +AEQ+LRE+ + Q+ D EL++Y+ KR +FED +RR
Sbjct: 11 KNKAPAPIQISAEQLLREAVDRQEPALQAPTQRFADLEELHEYQGRKRKEFEDYVRRNRL 70
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+ W+ YA WE Q EF RARS++E AL+ + + LW +Y E EM N+ INHARN+ D
Sbjct: 71 NMNNWMRYASWELEQKEFRRARSIFERALDVNPTSVVLWIRYIESEMRNRNINHARNLLD 130
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
RAV +LP VD+ WYKY+ MEE GN+ R +F+RWM W PD+ AW +YIK E RY + E
Sbjct: 131 RAVTILPRVDKFWYKYVYMEETLGNIQGTRQVFERWMSWEPDEGAWSAYIKLEKRYNEFE 190
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAE 237
AR +F+R HP +WIK+A+FE G D R VY A+E +D E
Sbjct: 191 RARAIFQRFTIVHPE-PRNWIKWARFEEEYGTSDLVREVYGMAIET------LGEDFMDE 243
Query: 238 QLFVAFAEFEERYKESE-SEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERE- 295
+LF+A+A+FE + KE E + A+ K D + A+ KAY FEK G+RE
Sbjct: 244 KLFIAYAKFEAKLKEYERARAIYKYALDRLPRSKAMALH------KAYTTFEKQFGDREG 297
Query: 296 -------RRRALY-ERLVERTKHLKVWISYAKFEASALSKDGGNPD 333
+RR Y E+L E ++ VW +A+ E ++ G+PD
Sbjct: 298 VEDVILSKRRVQYEEQLKENPRNYDVWFDFARLEETS-----GDPD 338
Score = 133 bits (334), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 121/460 (26%), Positives = 208/460 (45%), Gaps = 97/460 (21%)
Query: 23 QEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMW 82
++ FG+++ V+ L R+ +E+ ++ P + VW ++A+ E + + DR R ++
Sbjct: 289 EKQFGDREGVEDVILSKRRVQ----YEEQLKENPRNYDVWFDFARLEETSGDPDRVRDIY 344
Query: 83 ELALEEDC---------RNHTLWCKYAEFE-MINKFINHARNVWDRAVAVLPH----VDQ 128
E A+ + R LW YA +E M K ++ AR ++ + ++PH +
Sbjct: 345 ERAIAQIPPSQEKRHWRRYIYLWIFYAIWEEMEAKDVDRARQIYTECLKLIPHKKFTFAK 404
Query: 129 LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQ 188
+W + + ++ AAR + + P + + YI E + + R ++E+ ++
Sbjct: 405 IWLLKAQFDIRQMDLQAARKTLGQAIGMCPKDKLFRGYIDLERQLFEFVRCRTLYEKQIE 464
Query: 189 CHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
+P SWIKYA+ E + +RAR ++E G +Q + E
Sbjct: 465 WNPANSQSWIKYAELERGLDDSERARAIFEL---------------GIDQPMLDMPELV- 508
Query: 249 RYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERT 308
W KAYI FE+ +GE +R R LYERL+++T
Sbjct: 509 ----------------W----------------KAYIDFEEYEGEYDRVRQLYERLLQKT 536
Query: 309 KHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISS 368
H+KVWI+YA+FE + ++ E + E + S RR+
Sbjct: 537 DHVKVWINYARFEINVPEEEEE----EEEEEEEERPVSDEAKRRAR-------------- 578
Query: 369 LSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRR 428
VFE+ +K EM EERV LL W E + G D+ ++ +P+++KKRR
Sbjct: 579 ----AVFERAHKVFKEK--EMKEERVELLNAWRAFEHTHGSPEDIKKIEEQMPRRVKKRR 632
Query: 429 QIASDNGLSAGYEEYIDYLFPEESQ--KTNFKILEAASKW 466
++ D YEEY+DY+FP + Q + KIL+AA +W
Sbjct: 633 KLDDDR-----YEEYMDYVFPADDQAAASLTKILQAAHRW 667
>sp|Q5BDX1|CLF1_EMENI Pre-mRNA-splicing factor clf1 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=clf1
PE=3 SV=2
Length = 673
Score = 224 bits (572), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 141/346 (40%), Positives = 196/346 (56%), Gaps = 34/346 (9%)
Query: 4 KNPRGAPIRKTAEQILRESQE------HFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPG 57
KN AP++ +AEQ+LRE+ + Q+ D EL++Y+ KR +FED +RR
Sbjct: 11 KNKAPAPVQISAEQLLREAVDRQEPSLQAPTQRFADLEELHEYQGRKRKEFEDYVRRNRI 70
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+ W+ YA WE Q EF RARS++E AL+ D + LW +Y E EM N+ INHARN+ D
Sbjct: 71 NMNNWMRYAAWELEQKEFRRARSIFERALDVDSTSVPLWIRYIESEMRNRNINHARNLLD 130
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
RAV +LP VD+LWYKY+ MEE GN+ R +F+RWM W PD+ AW +YIK E RY + E
Sbjct: 131 RAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPDEGAWSAYIKLEKRYNEFE 190
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAE 237
AR +F+R HP +WIK+A+FE G D R VY A+E +D E
Sbjct: 191 RARAIFQRFTIVHPE-PRNWIKWARFEEEYGTSDLVREVYGLAVET------LGEDFMDE 243
Query: 238 QLFVAFAEFEERYKESE-SEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERE- 295
+LF+A+A FE + KE E + A+ K D + +I KAY FEK G+RE
Sbjct: 244 KLFIAYARFETKLKEYERARAIYKYALDRLPRSKSITLH------KAYTTFEKQFGDREG 297
Query: 296 -------RRRALY-ERLVERTKHLKVWISYAKFEASALSKDGGNPD 333
+RR Y E+L E ++ VW +A+ E + G+P+
Sbjct: 298 VENVILAKRRVQYEEQLKENLRNYDVWFDFARLEEQS-----GDPE 338
Score = 135 bits (340), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 128/477 (26%), Positives = 210/477 (44%), Gaps = 102/477 (21%)
Query: 6 PRGAPIRKTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINY 65
PR I T + ++ FG+++ V+ L R+ ++++R + VW ++
Sbjct: 274 PRSKSI--TLHKAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLR----NYDVWFDF 327
Query: 66 AKWEGSQNEFDRARSMWELALEEDC---------RNHTLWCKYAEFE-MINKFINHARNV 115
A+ E + +R R ++E A+ + R LW YA +E M K I+ AR V
Sbjct: 328 ARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWEEMEAKDIDRARQV 387
Query: 116 WDRAVAVLPH----VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFEL 171
+ + ++PH ++W + E N+ AAR + + P + + YI E
Sbjct: 388 YTECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQAIGMCPKDKLFRGYIDLER 447
Query: 172 RYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGD 231
+ + R ++E+ ++ +P+ SWI+YA+ E + +RAR +YE
Sbjct: 448 QLFEFVRCRTLYEKQIEWNPSNSQSWIQYAELERGLDDTERARAIYEL------------ 495
Query: 232 DDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQ 291
G +Q + E W KAYI FE +
Sbjct: 496 ---GIDQPTLDMPELV-----------------W----------------KAYIDFEDDE 519
Query: 292 GERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGAR 351
GE ER R LYERL+++T H+KVWI+YA+FE + PD E + E + S R
Sbjct: 520 GEYERERQLYERLLQKTDHVKVWINYARFEINV-------PDEEEEEEEEERPISDEAKR 572
Query: 352 RSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELG 411
R+ VFE+ +K E+ EERV LL W E + G
Sbjct: 573 RAR------------------AVFERAHRVFKEK--ELKEERVELLNAWRAFEHTHGSPE 612
Query: 412 DVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEESQK-TNF-KILEAASKW 466
D++ ++ +P+++KKRR++ D YEEY+DY+FP + Q N K+L A +W
Sbjct: 613 DIDKIEKQMPRRVKKRRKLDDDR-----YEEYMDYVFPADDQSAANLSKLLRMAHQW 664
>sp|P0CO10|CLF1_CRYNJ Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=CLF1 PE=3 SV=1
Length = 726
Score = 223 bits (567), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 199/360 (55%), Gaps = 47/360 (13%)
Query: 1 MAKKNPRG----------APIRKTAEQILRESQE------HFGEQKSVDPTELYDYRLHK 44
MA ++PR A ++ TAEQ+LRE+QE +Q+ D EL +++ K
Sbjct: 1 MAGRDPRDRAPRVRNRAPAAVQITAEQLLREAQERQEPAIQAPKQRVQDLEELSEFQARK 60
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R +FE IR W YA+WE SQNE++R+RS++E AL+ D R+ LW KY + E+
Sbjct: 61 RTEFESRIRYSRDSILAWTKYAQWEASQNEYERSRSVFERALDVDPRSVDLWIKYTDMEL 120
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
+ INHARN++DRA+ +LP VD LWYKY+ +EE+ NV+ AR IF+RWM W P+ +AW
Sbjct: 121 KARNINHARNLFDRAITLLPRVDALWYKYVYLEELLLNVSGARQIFERWMQWEPNDKAWQ 180
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKK 224
SYIK E RY +++ A ++ER + C P + +W+ +AKFE RG+ D+AR V++ ALE
Sbjct: 181 SYIKLEERYNELDRASAIYERWIACRP-IPKNWVTWAKFEEDRGQPDKAREVFQTALE-- 237
Query: 225 LADGDGDDD-EGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKA 283
GD ++ E A+ +F AFA E R KE E + +F + P+ K+
Sbjct: 238 -FFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKF-----------ALARLPRSKS 285
Query: 284 ------YIHFEKSQGERE--------RRRALY-ERLVERTKHLKVWISYAKFEASALSKD 328
Y FEK G+R +RR Y E L + W S A+ E A D
Sbjct: 286 ASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFSLARLEEDAYRAD 345
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 132/479 (27%), Positives = 207/479 (43%), Gaps = 106/479 (22%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHT--LWCKYAEFEMI 105
F D +V +V+ +A+ E EF+RAR +++ AL R+ + L+ +Y +FE
Sbjct: 239 FGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKFALARLPRSKSASLYAQYTKFEKQ 298
Query: 106 N--------KFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA--------GNVAAARL- 148
+ + R ++ +A P W+ R+EE A +V R+
Sbjct: 299 HGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFSLARLEEDAYRADREDGEDVEPMRVR 358
Query: 149 -IFDRWMHWTP---DQQAWLSYIKFELRYEQVE--------LARQVFERLVQCHPNVVSS 196
+++R + P +++ W YI L+Y E AR V++ V+ P+ +
Sbjct: 359 EVYERAVANVPPALEKRYWRRYIYLWLQYAAFEEIDTKDYDRARDVYKAAVKLVPHKTFT 418
Query: 197 ----WIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE 252
W+ YA FE+RR ++ AR V G G +LF + E E R +E
Sbjct: 419 FAKLWLAYAYFEIRRLDVSAARKVL----------GAGIGMCPKPKLFTGYIELEMRLRE 468
Query: 253 ------------SESEALRKEFGDWVLIEDAIVGKGKA--------------PKD--KAY 284
+ +L + W +E A+ + P+ KAY
Sbjct: 469 FDRVRTLYEKFLTYDPSLSSAWIQWTQVESAVEDFERVRAIFELAVQQSLDMPEIVWKAY 528
Query: 285 IHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKK 344
I FE +GERER R LYERL+ERT H+KVWISYA E + L GG D + + E +
Sbjct: 529 IDFEAGEGERERARNLYERLLERTSHVKVWISYALMEIATL---GGGED-EDGNEIEGEA 584
Query: 345 QSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNME 404
AR+ VFE+G Y A E+R +LLE W + E
Sbjct: 585 GDADLARQ---------------------VFERG--YKDLRAKGEKEDRAVLLESWKSFE 621
Query: 405 RSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPE---ESQKTNFKIL 460
+ G+ + V+ MLP K+ R+ +++G S EEY D +FP+ E+ T+FK
Sbjct: 622 QEHGDEETLAKVEDMLPTTRKRWRK--AEDG-SGELEEYWDLVFPDDEREANPTSFKFF 677
>sp|P0CO11|CLF1_CRYNB Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=CLF1 PE=3 SV=1
Length = 726
Score = 223 bits (567), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 199/360 (55%), Gaps = 47/360 (13%)
Query: 1 MAKKNPRG----------APIRKTAEQILRESQE------HFGEQKSVDPTELYDYRLHK 44
MA ++PR A ++ TAEQ+LRE+QE +Q+ D EL +++ K
Sbjct: 1 MAGRDPRDRAPRVRNRAPAAVQITAEQLLREAQERQEPAIQAPKQRVQDLEELSEFQARK 60
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R +FE IR W YA+WE SQNE++R+RS++E AL+ D R+ LW KY + E+
Sbjct: 61 RTEFESRIRYSRDSILAWTKYAQWEASQNEYERSRSVFERALDVDPRSVDLWIKYTDMEL 120
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
+ INHARN++DRA+ +LP VD LWYKY+ +EE+ NV+ AR IF+RWM W P+ +AW
Sbjct: 121 KARNINHARNLFDRAITLLPRVDALWYKYVYLEELLLNVSGARQIFERWMQWEPNDKAWQ 180
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKK 224
SYIK E RY +++ A ++ER + C P + +W+ +AKFE RG+ D+AR V++ ALE
Sbjct: 181 SYIKLEERYNELDRASAIYERWIACRP-IPKNWVTWAKFEEDRGQPDKAREVFQTALE-- 237
Query: 225 LADGDGDDD-EGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKA 283
GD ++ E A+ +F AFA E R KE E + +F + P+ K+
Sbjct: 238 -FFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKF-----------ALARLPRSKS 285
Query: 284 ------YIHFEKSQGERE--------RRRALY-ERLVERTKHLKVWISYAKFEASALSKD 328
Y FEK G+R +RR Y E L + W S A+ E A D
Sbjct: 286 ASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFSLARLEEDAYRAD 345
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 132/479 (27%), Positives = 207/479 (43%), Gaps = 106/479 (22%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHT--LWCKYAEFEMI 105
F D +V +V+ +A+ E EF+RAR +++ AL R+ + L+ +Y +FE
Sbjct: 239 FGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKFALARLPRSKSASLYAQYTKFEKQ 298
Query: 106 N--------KFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA--------GNVAAARL- 148
+ + R ++ +A P W+ R+EE A +V R+
Sbjct: 299 HGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFSLARLEEDAYRADREDGEDVEPMRVR 358
Query: 149 -IFDRWMHWTP---DQQAWLSYIKFELRYEQVE--------LARQVFERLVQCHPNVVSS 196
+++R + P +++ W YI L+Y E AR V++ V+ P+ +
Sbjct: 359 EVYERAVANVPPALEKRYWRRYIYLWLQYAAFEEIDTKDYDRARDVYKAAVKLVPHKTFT 418
Query: 197 ----WIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE 252
W+ YA FE+RR ++ AR V G G +LF + E E R +E
Sbjct: 419 FAKLWLAYAYFEIRRLDVSAARKVL----------GAGIGMCPKPKLFTGYIELEMRLRE 468
Query: 253 ------------SESEALRKEFGDWVLIEDAIVGKGKA--------------PKD--KAY 284
+ +L + W +E A+ + P+ KAY
Sbjct: 469 FDRVRTLYEKFLTYDPSLSSAWIQWTQVESAVEDFERVRAIFELAVQQSLDMPEIVWKAY 528
Query: 285 IHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKK 344
I FE +GERER R LYERL+ERT H+KVWISYA E + L GG D + + E +
Sbjct: 529 IDFEAGEGERERARNLYERLLERTSHVKVWISYALMEIATL---GGGED-EDGNEIEGEA 584
Query: 345 QSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNME 404
AR+ VFE+G Y A E+R +LLE W + E
Sbjct: 585 GDADLARQ---------------------VFERG--YKDLRAKGEKEDRAVLLESWKSFE 621
Query: 405 RSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPE---ESQKTNFKIL 460
+ G+ + V+ MLP K+ R+ +++G S EEY D +FP+ E+ T+FK
Sbjct: 622 QEHGDEETLAKVEDMLPTTRKRWRK--AEDG-SGELEEYWDLVFPDDEREANPTSFKFF 677
>sp|Q9HF03|CLF1_CRYNH Pre-mRNA-splicing factor CLF1 OS=Cryptococcus neoformans var.
grubii serotype A (strain H99 / ATCC 208821 / CBS 10515
/ FGSC 9487) GN=CLF1 PE=3 SV=1
Length = 724
Score = 222 bits (565), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 138/360 (38%), Positives = 199/360 (55%), Gaps = 47/360 (13%)
Query: 1 MAKKNPRG----------APIRKTAEQILRESQE------HFGEQKSVDPTELYDYRLHK 44
MA ++PR A ++ TAEQ+LRE+QE +Q+ D EL +++ K
Sbjct: 1 MAGRDPRDRAPRVRNRAPAAVQITAEQLLREAQERQEPTIQAPKQRVQDLEELSEFQARK 60
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R +FE IR W YA+WE SQNE++R+RS++E AL+ D R+ LW KY + E+
Sbjct: 61 RTEFESRIRYSRDSILAWTKYAQWEASQNEYERSRSVFERALDVDPRSVDLWIKYTDMEL 120
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
+ INHARN++DRA+ +LP VD LWYKY+ +EE+ NV+ AR IF+RWM W P+ +AW
Sbjct: 121 KARNINHARNLFDRAITLLPRVDALWYKYVYLEELLLNVSGARQIFERWMQWEPNDKAWQ 180
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKK 224
SYIK E RY +++ A ++ER + C P + +W+ +AKFE RG+ D+AR V++ ALE
Sbjct: 181 SYIKLEERYNELDRASAIYERWIACRP-IPKNWVAWAKFEEDRGQPDKAREVFQTALE-- 237
Query: 225 LADGDGDDD-EGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKA 283
GD ++ E A+ +F AFA E R KE E + +F + P+ K+
Sbjct: 238 -FFGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKF-----------ALARLPRSKS 285
Query: 284 ------YIHFEKSQGERE--------RRRALY-ERLVERTKHLKVWISYAKFEASALSKD 328
Y FEK G+R +RR Y E L + W S A+ E A D
Sbjct: 286 ASLYAQYTKFEKQHGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFSLARLEEDAYRAD 345
Score = 109 bits (273), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 132/479 (27%), Positives = 207/479 (43%), Gaps = 106/479 (22%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHT--LWCKYAEFEMI 105
F D +V +V+ +A+ E EF+RAR +++ AL R+ + L+ +Y +FE
Sbjct: 239 FGDEEEQVEKAQSVFAAFARMETRLKEFERARVIYKFALARLPRSKSASLYAQYTKFEKQ 298
Query: 106 N--------KFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA--------GNVAAARL- 148
+ + R ++ +A P W+ R+EE A +V R+
Sbjct: 299 HGDRAGVELTVLGKRRIQYEEELAYDPTNYDAWFSLARLEEDAYRADREDGEDVEPMRVR 358
Query: 149 -IFDRWMHWTP---DQQAWLSYIKFELRYEQVE--------LARQVFERLVQCHPNVVSS 196
+++R + P +++ W YI L+Y E AR V++ V+ P+ +
Sbjct: 359 EVYERAVANVPPALEKRYWRRYIYLWLQYAAFEEIDTKDYDRARDVYKAAVKLVPHKTFT 418
Query: 197 ----WIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE 252
W+ YA FE+RR ++ AR V G G +LF + E E R +E
Sbjct: 419 FAKLWLAYAYFEIRRLDVSAARKVL----------GAGIGMCPKPKLFTGYIELEMRLRE 468
Query: 253 ------------SESEALRKEFGDWVLIEDAIVGKGKA--------------PKD--KAY 284
+ +L + W +E A+ + P+ KAY
Sbjct: 469 FDRVRTLYEKFLTYDPSLSSAWIQWTQVESAVEDFERVRAIFELAVQQSLDMPEIVWKAY 528
Query: 285 IHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKK 344
I FE +GERER R LYERL+ERT H+KVWISYA E + L GG D + + E +
Sbjct: 529 IDFEAGEGERERARNLYERLLERTSHVKVWISYALMEIATL---GGGED-EDGNEIEGEA 584
Query: 345 QSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNME 404
AR+ VFE+G Y A E+R +LLE W + E
Sbjct: 585 GDADLARK---------------------VFERG--YKDLRAKGEKEDRAVLLESWKSFE 621
Query: 405 RSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPE---ESQKTNFKIL 460
+ G+ + V+ MLP K+ R+ +++G S EEY D +FP+ E+ T+FK
Sbjct: 622 QEHGDEEMLAKVEDMLPTTRKRWRK--AEDG-SGELEEYWDLVFPDDEKEANPTSFKFF 677
>sp|Q7SGD2|CLF1_NEUCR Pre-mRNA-splicing factor clf-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=clf-1 PE=3 SV=1
Length = 695
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/345 (38%), Positives = 192/345 (55%), Gaps = 28/345 (8%)
Query: 4 KNPRGAPIRKTAEQILRESQE------HFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPG 57
KN AP++ +AEQ+LRE+ + Q+ D EL +Y+ KR +FED +RR
Sbjct: 11 KNKAPAPVQISAEQLLREAVDRQEVNLQTPTQRFADLEELKEYQGRKRKEFEDYVRRNRV 70
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+ W+ YA+WE Q EF RARS++E AL+ N LW +Y + E+ N+ INHARN+ D
Sbjct: 71 RLSNWLQYAQWELEQKEFARARSVFERALDVHPNNTQLWIRYVQAEIKNRNINHARNLLD 130
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
RAV LP V LWY+Y+ + E+ G++ R +FDRWM W PD+QAW +YI+ E RY + +
Sbjct: 131 RAVTRLPRVTSLWYQYLYVMEMLGDIPGTRQVFDRWMKWQPDEQAWSAYIRLEKRYGEFD 190
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAE 237
AR++F HP +W+K+AKFE G D R V++ A++ +A+ GDD E
Sbjct: 191 RAREIFRAFTAVHPE-PRTWLKWAKFEEEYGTSDTVREVFQTAIQ-TIAETLGDDAVD-E 247
Query: 238 QLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERE-- 295
++F+AFA +E R +E E +FG D + Y FEK G++E
Sbjct: 248 RIFIAFARYEARLREYERARAIYKFG-----LDNLPRSKSMTLHAHYTTFEKQFGDKEGV 302
Query: 296 ------RRRALYERLV-ERTKHLKVWISYAKFEASALSKDGGNPD 333
+RR LYE V E K+ VW +A+ E S GG+ D
Sbjct: 303 EDVILTKRRRLYEEQVKENAKNYDVWFDFARLEES-----GGDVD 342
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 115/460 (25%), Positives = 199/460 (43%), Gaps = 95/460 (20%)
Query: 23 QEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMW 82
++ FG+++ V+ L +R +E+ ++ + VW ++A+ E S + DR R ++
Sbjct: 293 EKQFGDKEGVEDVIL----TKRRRLYEEQVKENAKNYDVWFDFARLEESGGDVDRTREVY 348
Query: 83 ELALEE--DCRNHTLWCKYAEFEMI--------NKFINHARNVWDRAVAVLPH----VDQ 128
E A+ + + W +Y + K I AR ++D + ++PH +
Sbjct: 349 ERAIAQVPPTQEKRHWRRYIFLFLFYAIWEERETKDIGRARQIYDTCLNLIPHKKFTFAK 408
Query: 129 LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQ 188
+W E G + AR R + P + + YI E + + E R ++E+ V
Sbjct: 409 VWVAKAHFEIRQGQLTTARKTLGRAIGMCPKDKIFKEYILLEQKLYEFERCRTLYEKHVM 468
Query: 189 CHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
+P +WIK+A+ E +++R R ++E A+ + + D
Sbjct: 469 YNPANCQTWIKWAELERGLDDLERTRAIFELAVSQPILDM-------------------- 508
Query: 249 RYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERT 308
+V K AYI FE+ +GE ER RALYERL+E+
Sbjct: 509 ---------------------PEVVWK-------AYIDFEEEEGEYERTRALYERLLEKA 540
Query: 309 KHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISS 368
H KVWISYA+FE + PD +E + ++ + +
Sbjct: 541 DHPKVWISYAQFEINI-------PDEAEEEEETEEEVEEKPVSEE-------------AK 580
Query: 369 LSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRR 428
+ +FE+ K E+ ERV LL WL E++ G D+ +Q +P+K KK+R
Sbjct: 581 ARARKIFERAHKSMKER--ELKAERVSLLNAWLAFEKTHGSAEDIEKIQKQMPRKTKKKR 638
Query: 429 QIASDNGLSAGYEEYIDYLFPEESQKTN--FKILEAASKW 466
++ D +EEY+DY+FP + Q+T +L A+ W
Sbjct: 639 KLEDDT-----WEEYVDYIFPADDQQTKNLSSLLAMANAW 673
>sp|P87312|CLF1_SCHPO Pre-mRNA-splicing factor cwf4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf4 PE=1 SV=1
Length = 674
Score = 215 bits (548), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 135/336 (40%), Positives = 188/336 (55%), Gaps = 27/336 (8%)
Query: 4 KNPRGAPIRKTAEQILRESQEH----FGEQKS--VDPTELYDYRLHKRNDFEDSIRRVPG 57
KN API+ +AEQ+LRE+ E F K D EL +++ KR +FED+IRR
Sbjct: 9 KNKNPAPIQISAEQLLREAVERQDVAFVPPKINITDLEELQEFQGRKRKEFEDAIRRNRL 68
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
W+ Y +WE Q EF RARS++E AL+ D LW KY E EM N+ INHARN++D
Sbjct: 69 AMGHWMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFD 128
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
RAV LP VD+LWYKY+ MEE+ GN+ R +F+RW+ W PD+ W+SYI+ E RY + E
Sbjct: 129 RAVTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEPDENCWMSYIRMERRYHENE 188
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAE 237
AR ++ER V HP V++W+++A+FE G R VY A+ D G + E
Sbjct: 189 RARGIYERFVVVHPE-VTNWLRWARFEEECGNAANVRQVYLAAI-----DALGQEFLN-E 241
Query: 238 QLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGER--- 294
+ F+AFA+FE R KE E ++ D + K Y HFEK G+
Sbjct: 242 RFFIAFAKFEIRQKEYERARTIFKYAI-----DFMPRSKSMELYKEYTHFEKQFGDHLGV 296
Query: 295 -----ERRRALYERLVERTKH-LKVWISYAKFEASA 324
++RR YE+L++ + + W+ K E SA
Sbjct: 297 ESTVLDKRRLQYEKLLKDSPYDYDTWLDLLKLEESA 332
Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 116/461 (25%), Positives = 190/461 (41%), Gaps = 101/461 (21%)
Query: 23 QEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMW 82
++ FG+ V+ T L RL +DS P D W++ K E S + + R +
Sbjct: 287 EKQFGDHLGVESTVLDKRRLQYEKLLKDS----PYDYDTWLDLLKLEESAGDINTIRETY 342
Query: 83 ELAL-------EEDC--RNHTLWCKYAEFEMIN-KFINHARNVWDRAVAVLPH----VDQ 128
E A+ E++ R +W Y FE I+ K ++ AR V+ A+ ++PH +
Sbjct: 343 EKAIAKVPEVVEKNAWRRYVYIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAK 402
Query: 129 LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQ 188
LW Y E + AR R + P + + YI+FE +Q + R ++E+ +
Sbjct: 403 LWLMYAMFELRQRKIDVARKTLGRALGMCPKPKLFRGYIEFEDAIKQFDRCRILYEKWIL 462
Query: 189 CHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
P + W+ YA E + G+ DRAR +Y A+ + + E E ++
Sbjct: 463 YDPEACAPWLGYAALETKLGDSDRARALYNLAVNQPIL-------ETPELVW-------- 507
Query: 249 RYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERT 308
KAYI FE + E + R++Y++L+
Sbjct: 508 ---------------------------------KAYIDFEFEEMEYGKARSIYQQLLRTA 534
Query: 309 KHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISS 368
H+KVWIS+A FE + L D P E +
Sbjct: 535 PHVKVWISFANFEIAHLEDDDEEPPNEEV-------------------------ASPTAV 569
Query: 369 LSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRR 428
+ + VFE + + + + EERV+LLE W E G V +++P+ +KKRR
Sbjct: 570 VRARNVFENALAHLRQQG--LKEERVVLLEAWKQFEAMHGTEDTRKHVSSLMPQVVKKRR 627
Query: 429 QIASDNGLSAGYEEYIDYLFPEESQKTN---FKILEAASKW 466
++ +EEY+DYLFP+ + K+LE + KW
Sbjct: 628 RLE-----DGSFEEYLDYLFPDTATDQGDKMRKMLELSRKW 663
>sp|Q527H0|CLF1_MAGO7 Pre-mRNA-splicing factor CLF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=CLF1 PE=3 SV=1
Length = 691
Score = 212 bits (539), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 131/336 (38%), Positives = 192/336 (57%), Gaps = 24/336 (7%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFGE------QKSVDPTELYDYRLHKRNDFEDSIRRVPG 57
KN AP++ +AEQ+LRE+ + E Q+ D EL++Y+ KR +FE +R
Sbjct: 11 KNKAAAPVQISAEQLLREATDRQEEALQKPTQRFEDLEELHEYQGRKRKEFESYCQRSGF 70
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+ W+ YA+WE Q E+ R+RS++E AL TLW +Y E E+ ++ IN ARN+ D
Sbjct: 71 NLKNWLQYAQWELEQKEYARSRSVFERALNLHANKVTLWIRYVEAELKSRNINFARNLLD 130
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
RAV LP VD+LWYKY+ +EE+ GN+ R +F+RWM W PD+ AW ++IK E RY + +
Sbjct: 131 RAVTHLPRVDKLWYKYVWVEEMLGNIPGVRQVFERWMEWQPDEAAWSAFIKLEQRYGEYD 190
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAE 237
AR++F R HP +WIK++KFE G DR R V+ERA+E+ G D+ E
Sbjct: 191 RAREIFTRFTMVHPE-PRNWIKWSKFEEEYGTSDRVREVFERAIEELSKYG---DEFVEE 246
Query: 238 QLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERE-- 295
+LF+A+A +E + + + +FG +E+ K K Y FEK G+RE
Sbjct: 247 RLFIAYARYEAKLHDLDRARAIYKFG----LENLPRSKAMLLH-KEYTTFEKQYGDREGV 301
Query: 296 ------RRRALYERLV-ERTKHLKVWISYAKFEASA 324
+RR YE LV E K+ VW YA+ E ++
Sbjct: 302 EDVVLSKRRRHYEDLVRENPKNYDVWFDYARLEEAS 337
Score = 134 bits (336), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 114/445 (25%), Positives = 199/445 (44%), Gaps = 96/445 (21%)
Query: 23 QEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMW 82
++ +G+++ V+ L R H +ED +R P + VW +YA+ E + + DR R ++
Sbjct: 292 EKQYGDREGVEDVVLSKRRRH----YEDLVRENPKNYDVWFDYARLEEASGDIDRTREVY 347
Query: 83 ELALEE----DCRNH-----TLWCKYAEFEMIN-KFINHARNVWDRAVAVLPH----VDQ 128
E A+ + + H LW +A +E K AR V+D + ++PH +
Sbjct: 348 EKAIAQVPPTQAKRHWRRYIYLWIFFALWEETEAKNPERARQVYDTCLKLIPHRTFTFAK 407
Query: 129 LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQ 188
+W E G++AAAR R + P + + YI+ E + + R ++E+ +
Sbjct: 408 VWMHKAHFEIRQGDLAAARKTLGRAIGMCPKDRLFKGYIEMEQKLYEFGRCRILYEKHIA 467
Query: 189 CHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
+P S+W+K+A+ E ++DRAR + D G Q + E
Sbjct: 468 YNPANCSTWVKWAELERGLDDLDRARAIL---------------DMGIAQPVLDMPEVV- 511
Query: 249 RYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERT 308
W K+YI FE+ +GE ++ R+LYERL+++
Sbjct: 512 ----------------W----------------KSYIDFEEEEGEYDKTRSLYERLLDKA 539
Query: 309 KHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISS 368
H KVWISYA+FE + P+ + E ++Q + ++
Sbjct: 540 DHPKVWISYAQFEINI-------PEEAGEGADEEQEQPVSDEAKAR-------------- 578
Query: 369 LSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRR 428
+ VFE+ +K EM ERV +L WL E++ G D+ ++ +P++ KK+R
Sbjct: 579 --ARRVFERAHQGFKDK--EMKAERVSILNAWLVFEKTHGSAEDIEKIEKQMPRRTKKKR 634
Query: 429 QIASDNGLSAGYEEYIDYLFPEESQ 453
++ D +EEY+DY+FP + Q
Sbjct: 635 KLDDDT-----WEEYVDYIFPADEQ 654
>sp|Q5K654|CLF1_PARBR Pre-mRNA-splicing factor CLF1 OS=Paracoccidioides brasiliensis
GN=CLF1 PE=3 SV=1
Length = 677
Score = 211 bits (536), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 187/337 (55%), Gaps = 29/337 (8%)
Query: 4 KNPRGAPIRKTAEQILRESQE------HFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPG 57
KN AP + +AEQ+LRE+ + Q+ D EL++Y+ KR +FED +RR
Sbjct: 11 KNKAPAPQQISAEQLLREAVDRQEPALQAPTQRFADLEELHEYQGRKRKEFEDYVRRNRI 70
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117
W+ YA+WE Q EF RARS++E AL+ D LW +Y E EM + INHARN+ D
Sbjct: 71 SMNNWMRYAQWELEQKEFRRARSVFERALDVDPTAVVLWIRYIEAEMKTRNINHARNLLD 130
Query: 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177
RAV + VD+LWYKY+ MEE+ GN+ R +F+RWM W PD+ AW +YIK E RY + +
Sbjct: 131 RAVTIYSRVDKLWYKYVYMEEMLGNIPGTRQVFERWMSWEPDEGAWGAYIKLEKRYNEFD 190
Query: 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAE 237
R +FER HP +WIK+A+FE G D R VY A+E +D E
Sbjct: 191 RVRAIFERFTVVHPE-PKNWIKWARFEEEYGTSDMVREVYGLAIET------LGEDFMDE 243
Query: 238 QLFVAFAEFEERYKESE-SEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERE- 295
+LF+A+A +E + KE E + A+ K + L D + KAY FEK G+RE
Sbjct: 244 KLFIAYARYEAKLKEFERARAIYK----YAL--DRLPRAKSVALHKAYTTFEKQFGDREG 297
Query: 296 -------RRRALY-ERLVERTKHLKVWISYAKFEASA 324
+RR Y E++ E K+ +W + + E S+
Sbjct: 298 VEDVILSKRRVQYEEQIKENPKNYDIWFDFVRLEESS 334
Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 127/464 (27%), Positives = 214/464 (46%), Gaps = 87/464 (18%)
Query: 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHT--LWCKYAEFE--------MINK 107
D ++I YA++E EF+RAR++++ AL+ R + L Y FE + +
Sbjct: 242 DEKLFIAYARYEAKLKEFERARAIYKYALDRLPRAKSVALHKAYTTFEKQFGDREGVEDV 301
Query: 108 FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA---WL 164
++ R ++ + P +W+ ++R+EE +G+V R +++R + P Q W
Sbjct: 302 ILSKRRVQYEEQIKENPKNYDIWFDFVRLEESSGDVERVRDVYERAIAQMPPSQEKRHWR 361
Query: 165 SYIKF--------ELRYEQVELARQVFERLVQCHPN----VVSSWIKYAKFEMR------ 206
YI EL + +E A Q+++ ++ P+ W+ A+FE+R
Sbjct: 362 RYIYLWIFYALWEELEAKDMERAHQIYQECIRLIPHKKFTFAKIWLMKAQFEIRQMDLQA 421
Query: 207 ------------------RGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
+G ID R ++E +KL + + Q ++ FAE E
Sbjct: 422 ARKTLGHAIGACPKDKLFKGYIDLERQLFEFVRCRKLFEKQIEWSPSNCQAWIKFAELER 481
Query: 249 RYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERT 308
+ + E G I ++ + K+YI FE+ +GE +R RALYERL+E+T
Sbjct: 482 GLDDIDRARAIYELG----ISQPVLDMPELLW-KSYIDFEEYEGEYDRTRALYERLLEKT 536
Query: 309 KHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISS 368
H+KVWI++A+FE + + + D E + E K+ R
Sbjct: 537 NHVKVWINFARFEINIPEGEEEDEDEEEKPVSEEAKRRAR-------------------- 576
Query: 369 LSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRR 428
VFE+ +K EM EERV LL W + E++ G D+ ++ +P K+KKRR
Sbjct: 577 ----MVFERAHKVFKEK--EMKEERVALLNAWKSFEQTHGSPDDIAKIERQMPSKVKKRR 630
Query: 429 QIASDNGLSAGYEEYIDYLFP--EESQKTNFKILEAASKWIKKK 470
++ D YEEY+DY+FP +ES +IL+ A KW K++
Sbjct: 631 KLDDDR-----YEEYLDYMFPADDESSAKLSQILQMAHKWKKEQ 669
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEF 102
R FE I P + WI +A+ E ++ DRAR+++EL + + + LW Y +F
Sbjct: 456 RKLFEKQIEWSPSNCQAWIKFAELERGLDDIDRARAIYELGISQPVLDMPELLWKSYIDF 515
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137
E + R +++R + HV ++W + R E
Sbjct: 516 EEYEGEYDRTRALYERLLEKTNHV-KVWINFARFE 549
>sp|Q6C186|CLF1_YARLI Pre-mRNA-splicing factor CLF1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=CLF1 PE=3 SV=1
Length = 676
Score = 197 bits (501), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 179/347 (51%), Gaps = 35/347 (10%)
Query: 4 KNPRGAPIRKTAEQILRESQEH-----FGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGD 58
KN A ++ +AEQIL E+ E ++ D EL +Y+ KR ++E ++RR +
Sbjct: 6 KNKAPAALQISAEQILLEAYERKETPLQQTEQIADLEELAEYQGRKRQEYEGALRRNRLN 65
Query: 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDR 118
T W+ YA+WE Q EF RARS++E ALE + + W +Y + E+ K INHARN+ DR
Sbjct: 66 TGQWMRYAQWELEQREFARARSVFERALEVNSTHVPTWIRYIQCELKEKNINHARNLLDR 125
Query: 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVEL 178
AV +LP VD+LW+ Y+ EE GN+A R +F+RWMHW P AW +Y+ E RY + +
Sbjct: 126 AVTLLPRVDKLWFTYVATEETLGNIAGCRAVFERWMHWRPPVTAWAAYVNMEKRYREFDR 185
Query: 179 ARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQ 238
AR + R V HP +W K+AKFEM G D R VY ++ + G D E
Sbjct: 186 ARGILRRYVTVHPG-APAWNKWAKFEMEAGNRDTVREVYALGIDTLVEMAHGGVDFLDES 244
Query: 239 LFVAFAEFEERYKESE-SEALRKEFGDWVLIEDAIVGKGKAPKDKA------YIHFEKSQ 291
L +A FE R++E E + AL G K PK K+ Y FEK
Sbjct: 245 LLAGWASFETRHREYERARAL------------YTYGLEKLPKSKSAKLYADYTAFEKQY 292
Query: 292 GERE--------RRRALYE-RLVERTKHLKVWISYAKF-EASALSKD 328
G +E +RR+ YE +L E W SY + S L D
Sbjct: 293 GAKEGIENVVLTKRRSKYEDQLKEDPADYDTWFSYITLGQESGLEAD 339
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 111/441 (25%), Positives = 195/441 (44%), Gaps = 94/441 (21%)
Query: 44 KRNDFEDSIRRVPGDTAVWINYAKW-EGSQNEFDRARSMWELALEEDCRNHT-------- 94
+R+ +ED ++ P D W +Y + S E D+ R ++E A+ + H+
Sbjct: 306 RRSKYEDQLKEDPADYDTWFSYITLGQESGLEADQIREIFERAVS-NVPPHSKRLWRRYI 364
Query: 95 -LWCKYAEFEMI-NKFINHARNVWDRAVAVLPH----VDQLWYKYIRMEEIAGNVAAARL 148
LW KYA +E + NK + AR ++ ++++PH ++W + + E GN+ AR
Sbjct: 365 FLWIKYAIWEELENKEVEKAREIYKTCISIIPHKKFTFAKVWLLWAKFEIRHGNLPEARK 424
Query: 149 IFDRWMHWTPDQQA-WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR 207
I R + + + A + YI E + + + R+++++ V+ + W++YA+ E
Sbjct: 425 ILGRGLGMSGGKPALYKGYIALEAKLREFDRCRKLYDKYVEKFAEFAAPWMEYAELEQML 484
Query: 208 GEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVL 267
G+ +RAR ++E A+ + + E E ++ F EF E+E E
Sbjct: 485 GDEERARAIFELAVSQP-------EMEMPELVWKRFIEF-----EAEEENY--------- 523
Query: 268 IEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALS 326
+R RA+Y +L++RT H+KVWIS+A+FE + +
Sbjct: 524 ---------------------------DRARAIYRQLLDRTHGHIKVWISFAQFEVTVPA 556
Query: 327 KDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSA 386
+D +L D E + + A+ R I+ + L A
Sbjct: 557 ED---QELQYNDEGEAEIEVTEEAKARARSIFGEAWDAL-------------------KA 594
Query: 387 PEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDY 446
EERV+L E W E G+ + P +KK+R++ +EEYIDY
Sbjct: 595 ANKREERVVLFESWREFEEEHGDDKSKADLDKRKPTPVKKKRKLEDGT-----FEEYIDY 649
Query: 447 LFPEESQKTNF-KILEAASKW 466
+FP + + +F K+LE A KW
Sbjct: 650 VFPTDEEDKSFSKLLENARKW 670
>sp|Q6BSP7|CLF1_DEBHA Pre-mRNA-splicing factor CLF1 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=CLF1 PE=3 SV=2
Length = 714
Score = 164 bits (416), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 164/295 (55%), Gaps = 14/295 (4%)
Query: 14 TAEQILRESQEHFGE------QKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAK 67
T+EQIL+++ + E Q D EL ++L KR ++E + + + W+ YAK
Sbjct: 17 TSEQILQDAFQLKDEPLNRPKQSIQDLDELRSFQLTKRKEYEQQLNKNRLNFGQWLRYAK 76
Query: 68 WEGSQN-EFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV 126
WE N +F RARS++E ALE + ++ W Y +FE+ +K I HARN+ DRAV LP V
Sbjct: 77 WEVKHNHDFPRARSIFERALEVNVQHIPFWTHYIQFELSHKNITHARNLLDRAVTTLPRV 136
Query: 127 DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERL 186
D+LW+ Y++ EE N R+IF+RW+ W P+ AW +YI +E RY++ + AR+++ R
Sbjct: 137 DKLWFLYVQTEETLKNYQMVRIIFERWLSWNPNPSAWDAYINYEKRYDEYDNAREIYIRY 196
Query: 187 VQCHPNVVSSWIKYAKFEMRRGEID-----RARNVYERALEKKLADGDGDDDEGAEQLFV 241
VQ H + W+K+ FEM ID R RNV+E +++ LA D ++
Sbjct: 197 VQIHSS-GEIWLKWIDFEMNDVPIDPEQVKRIRNVFELSVDSMLASEALRGDISLAEIIN 255
Query: 242 AFAEFEERYKESE-SEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERE 295
++ +E KE E + A+ + I++ I + + +Y FEKS G+++
Sbjct: 256 KWSLWEISVKEYERARAIFQLMLKSDTIQEIITPEQRNQIYSSYTEFEKSYGDKD 310
Score = 96.3 bits (238), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 110/474 (23%), Positives = 205/474 (43%), Gaps = 91/474 (19%)
Query: 21 ESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARS 80
E ++ +G++ +++ + + +L +E+ + + P D W +Y ++ + R
Sbjct: 301 EFEKSYGDKDTIESSIMIKRKLK----YEEEVNKSPSDYDSWWSYISILQQEDNNEVTRE 356
Query: 81 MWELALE---EDCRNHT-------LWCKYA---EFEMINKFINHARNVWDRAVAVLPHVD 127
+E A++ D T +W KYA EF M + I + RN+W++A+ V+PH
Sbjct: 357 TFERAIKVIPTDAFKSTVWRRYIYIWVKYAFWEEFTMGS--IENGRNIWNKALKVIPH-- 412
Query: 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ---VELARQVFE 184
R F + W+S+ +FE+R + + AR++
Sbjct: 413 ------------------KRFTFAK---------IWISFAQFEIRNDPENGLASARKILG 445
Query: 185 RLVQCHPNVVSS---WIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFV 241
R + V + Y + E + GE DR R +YE+ LE L G+++ +
Sbjct: 446 RSIGQSSTVKPKRKLFKFYIELEQKLGEWDRVRKLYEKWLELSLV---GENNLSTINSLL 502
Query: 242 AFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKA--YIHFEKSQGERERRRA 299
+ +FE+ +E + E G + +D I K + +I++ K + R+
Sbjct: 503 TYIDFEKNIQEHQRCISLFELGVRLAEDDKIFTKVNPLEYMLMQFINYYKEEMRYAEARS 562
Query: 300 LYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYH 359
LY +LVER KVWIS+A FE+S + +A +++ +HR+
Sbjct: 563 LYRKLVERVSTPKVWISFALFESSIPTDSQL-----KAFEESTEEEFEFSIDETHRE--- 614
Query: 360 QFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAM 419
++ VF + +++K + + E+R +++E W E + G + +
Sbjct: 615 ----------TTRSVFREANDFFKHN--NLKEDRAVVIEAWKQYEEANGSEESLRDITKK 662
Query: 420 LPKKLKKRRQIASDNGLSAGYEEYIDYLFPEESQKTNFKI------LEAASKWI 467
LP +K+RR I + EEY+DY+FPE+ + KI L A KW+
Sbjct: 663 LPVIVKRRRLIEGEE------EEYLDYIFPEDEEAKPSKISGLNAFLANAQKWM 710
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 75/168 (44%), Gaps = 20/168 (11%)
Query: 163 WLSYIKFELRYEQ-VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
WL Y K+E+++ AR +FER ++ + + W Y +FE+ I ARN+ +RA+
Sbjct: 71 WLRYAKWEVKHNHDFPRARSIFERALEVNVQHIPFWTHYIQFELSHKNITHARNLLDRAV 130
Query: 222 EKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKD 281
++L+ + + EE K + +R F W+ P
Sbjct: 131 TTL---------PRVDKLWFLYVQTEETLKNYQ--MVRIIFERWL-------SWNPNPSA 172
Query: 282 -KAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKD 328
AYI++EK E + R +Y R V+ ++W+ + FE + + D
Sbjct: 173 WDAYINYEKRYDEYDNAREIYIRYVQIHSSGEIWLKWIDFEMNDVPID 220
>sp|Q5AED6|CLF1_CANAL Pre-mRNA-splicing factor CLF1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=CLF1 PE=3 SV=2
Length = 758
Score = 162 bits (409), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 158/288 (54%), Gaps = 15/288 (5%)
Query: 33 DPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQN-EFDRARSMWELALEEDCR 91
D EL Y+ KR +FE I + + W YAKWE N +F RARS+ E AL+ + +
Sbjct: 94 DTEELQSYQQTKRKEFEQHINKNRLNLGQWTRYAKWEIENNHDFPRARSILERALDVNIQ 153
Query: 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFD 151
+ W +Y + E+ +K INHARN+ +RA+ LP V++LW+ Y++ EE+ N R +F+
Sbjct: 154 HVPFWIQYIQLELSHKNINHARNLMERAINTLPRVNKLWFLYVQTEEMLKNYPMVRAVFE 213
Query: 152 RWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEM--RRGE 209
RW+ W PD W +YI FE RYE+ E R +F++ V PN +W K+ K+EM R +
Sbjct: 214 RWLDWHPDTSVWDAYINFEARYEEKENVRTIFKKYVHEFPN-AGTWYKWIKYEMENNRDD 272
Query: 210 IDRARNVYERALEKKLADG--DGDDDEGAEQLFVAFAEFEERYKE-SESEALRKEFGDWV 266
++ R V+E A++ L++ + DDDE + ++ +E E S + + K D
Sbjct: 273 VNTVRAVFESAVDTLLSNKSEENDDDEEFATIISSWTSWEVSCGEASRANEIFKLLLDNK 332
Query: 267 LIEDAIVGKGKAPKDKAYIHFEKSQGERE--------RRRALYERLVE 306
+ I K K+ A++ FEK+ G ++ +RR YE+ ++
Sbjct: 333 TNKLEISDKTKSSIYTAFVEFEKNFGNKDSIEQSVLIKRRIKYEQEIQ 380
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 109/484 (22%), Positives = 193/484 (39%), Gaps = 113/484 (23%)
Query: 21 ESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKW-EGSQNEFDRAR 79
E +++FG + S++ + L + +R +E I+ P D W Y + S N+ D
Sbjct: 352 EFEKNFGNKDSIEQSVL----IKRRIKYEQEIQNDPYDYDSWWKYMTLLQNSSNKSDLEN 407
Query: 80 SMWELA--LEEDCRNHTLWCKYAEF--------EMINKFINHARNVWDRAVAVLPHVDQL 129
+ ++ + D W +Y F EM N + AR +W+ + V+PH
Sbjct: 408 AFKKVTGNVVHDKHKSIKWRRYIMFWIWYAFWEEMTNNNPDSAREIWNNCLKVIPHKSFT 467
Query: 130 WYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELA--RQVFERLV 187
+ K W+ Y +FELR + LA R++ R +
Sbjct: 468 FAK-----------------------------VWIGYSEFELRNSEDGLAKARKILGRAI 498
Query: 188 -QCHPNV--VSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFA 244
Q N + + Y E + G+ +R R ++++ LE L +E + +
Sbjct: 499 GQTSINKPKIKIFKYYIDLEKKLGDWNRVRLLFQKWLEVSLLTTSS-----SELVIEKYV 553
Query: 245 EFEERYKE--------------SESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKS 290
EFE +E SE+ F L+E + F K
Sbjct: 554 EFESSIEEYDRCDSILSSARQLSENPEYSSSFNLQRLLE-------------ITVEFYKE 600
Query: 291 QGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGA 350
+ + ++ R +Y L+++ + WIS+A FE+S S E+ ++ ++G
Sbjct: 601 EMQYDKIREIYRALLDKDPNAHNWISFALFESSIPS-------------AEQLEEYLQGD 647
Query: 351 RRSHRKIYHQFATCLISSLSSS-GVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGE 409
AT S + S+ +FE+ + Y+K + E R++++E W + E G
Sbjct: 648 NEEFE------ATVDESQIESTRNIFEEAMTYFKDKDDK--ESRLVIIEAWRDFEEVNGS 699
Query: 410 LGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEESQK----TNFKILEAASK 465
++ V LP ++KRR + S EEYIDY+FP++ K K L A K
Sbjct: 700 DESLSKVTKRLPVIVRKRRTVGSIE------EEYIDYIFPDDESKKLPGKMSKFLANAKK 753
Query: 466 WIKK 469
W ++
Sbjct: 754 WAQQ 757
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 108/286 (37%), Gaps = 57/286 (19%)
Query: 163 WLSYIKFELRYEQ-VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
W Y K+E+ AR + ER + + V WI+Y + E+ I+ ARN+ ERA+
Sbjct: 123 WTRYAKWEIENNHDFPRARSILERALDVNIQHVPFWIQYIQLELSHKNINHARNLMERAI 182
Query: 222 EKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWV-LIEDAIVGKGKAPK 280
+ +L+ + + EE K +R F W+ D V
Sbjct: 183 ---------NTLPRVNKLWFLYVQTEEMLKNYP--MVRAVFERWLDWHPDTSVWD----- 226
Query: 281 DKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLC 340
AYI+FE E+E R ++++ V + W + K+E
Sbjct: 227 --AYINFEARYEEKENVRTIFKKYVHEFPNAGTWYKWIKYEM------------------ 266
Query: 341 ERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEW 400
++ R + R ++ L+S+ K+ + EE ++ W
Sbjct: 267 ----ENNRDDVNTVRAVFESAVDTLLSN--------------KSEENDDDEEFATIISSW 308
Query: 401 LNMERSFGELGDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDY 446
+ E S GE N + +L + +I SD S+ Y ++++
Sbjct: 309 TSWEVSCGEASRANEIFKLLLDNKTNKLEI-SDKTKSSIYTAFVEF 353
>sp|Q750X3|CLF1_ASHGO Pre-mRNA-splicing factor CLF1 OS=Ashbya gossypii (strain ATCC 10895
/ CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CLF1 PE=3
SV=1
Length = 683
Score = 161 bits (408), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 94/246 (38%), Positives = 139/246 (56%), Gaps = 7/246 (2%)
Query: 14 TAEQILRESQEHFGEQKSVDPT-----ELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKW 68
TA Q+L H G +K +D EL D++ KR++FE++++R D W+ YA +
Sbjct: 10 TAAQLLTAPVGHDGARKGMDVDILDVEELRDWQRRKRSEFEEALKRNRLDVRQWLRYAAF 69
Query: 69 EGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQ 128
E Q + RARS++E AL + +W +Y + E+ + +NHARN+ RA A+LP VD+
Sbjct: 70 EYEQRDMRRARSVFERALAVAPGDVVVWLRYVDCELRARDVNHARNLLVRATALLPRVDK 129
Query: 129 LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQ 188
LWYKY+ MEE G V R ++ +W P AW +++ FE R QVE R+V+ R V
Sbjct: 130 LWYKYVLMEESLGQVELVRGVYTKWCTLEPAAAAWDAFVDFETRQGQVEHVREVYSRYVM 189
Query: 189 CHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
HP V ++W+K+ FE + G+ R VY A + A D E EQL V+FAE+E
Sbjct: 190 VHP-VAATWLKWVAFERKHGDAGTVRRVYSLACDTLTAFAGADVHE-VEQLVVSFAEWEA 247
Query: 249 RYKESE 254
+E E
Sbjct: 248 TQQELE 253
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 166/402 (41%), Gaps = 103/402 (25%)
Query: 95 LWCKYAEF-EMINKFINHARNVWDRAV-AVLPHVD----QLWYKYIRMEEIAGNVAAARL 148
LW +Y F E + + R+++ + V V+P+ + W Y E + AR
Sbjct: 357 LWLRYLLFLETVLVDSDLTRSMYQKLVREVIPNTKFTFAKAWIMYAEFEIRQEKLDKARK 416
Query: 149 IFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRG 208
I + P + + YI E++ ++ + R++ E+L++ P+V+S+WI+YA+ E G
Sbjct: 417 ILGMSLGMCPKPKLFQYYIDLEIKLKEFDRVRRLHEKLLEFQPDVLSNWIEYAELEENLG 476
Query: 209 EIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLI 268
+ DRAR +YE L ADG G QL
Sbjct: 477 DEDRARGIYEIGL---TADG-GLSQARQLQLM---------------------------- 504
Query: 269 EDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKH-LKVWISYAKFEAS---- 323
+ YI FE E ER RALY R V + + VWIS A +E+S
Sbjct: 505 -------------QRYIQFETDASEFERARALYSRYVALSGYDPNVWISCALYESSVPTA 551
Query: 324 ----ALSKDGGNPDLSEAD--------LCERKKQSIRGARRSHRKIYHQFATCLISSLSS 371
+ + D N D ++D L E K+ R
Sbjct: 552 AQVASYAHDQPNSDGDDSDDAYEQEFELTEENKEQTR----------------------- 588
Query: 372 SGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRRQIA 431
+FEK + +Y + + E R+++L+ + + E G + + P+K+ ++R +
Sbjct: 589 -AIFEKALRHYTSEKDD--EGRILVLQAYKDYESIHGSAEARQKIASRQPRKVTRKRTV- 644
Query: 432 SDNGLSAGYEEYIDYLFPEESQKTN---FKILEAASKWIKKK 470
+G+ +EY+ Y FP+++ T+ K + A +W +++
Sbjct: 645 --DGIE---KEYVAYEFPDDTVSTSSVASKFVSLAQRWKQQQ 681
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 116/273 (42%), Gaps = 29/273 (10%)
Query: 45 RNDFEDSIRRVPGDTA-----VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKY 99
R+ ++ +R V +T WI YA++E Q + D+AR + ++L C L+ Y
Sbjct: 376 RSMYQKLVREVIPNTKFTFAKAWIMYAEFEIRQEKLDKARKILGMSLGM-CPKPKLFQYY 434
Query: 100 AEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIF------DRW 153
+ E+ K + R + ++ + P V W +Y +EE G+ AR I+ D
Sbjct: 435 IDLEIKLKEFDRVRRLHEKLLEFQPDVLSNWIEYAELEENLGDEDRARGIYEIGLTADGG 494
Query: 154 MHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCH---PNVVSSWIKYAKFEMRRGEI 210
+ Q YI+FE + E AR ++ R V PNV WI A +E +
Sbjct: 495 LSQARQLQLMQRYIQFETDASEFERARALYSRYVALSGYDPNV---WISCALYE---SSV 548
Query: 211 DRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIED 270
A V A ++ +DGD D D+ EQ F E E KE K + +D
Sbjct: 549 PTAAQVASYAHDQPNSDGD-DSDDAYEQEF----ELTEENKEQTRAIFEKALRHYTSEKD 603
Query: 271 AIVGKGKAPKDKAYIHFEKSQGERERRRALYER 303
+G+ +AY +E G E R+ + R
Sbjct: 604 ---DEGRILVLQAYKDYESIHGSAEARQKIASR 633
Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 159 DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYE 218
D + WL Y FE + AR VFER + P V W++Y E+R +++ ARN+
Sbjct: 59 DVRQWLRYAAFEYEQRDMRRARSVFERALAVAPGDVVVWLRYVDCELRARDVNHARNLLV 118
Query: 219 RALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKA 278
RA ++L+ + EE + E +R + W +E A A
Sbjct: 119 RATALL---------PRVDKLWYKYVLMEESL--GQVELVRGVYTKWCTLEPA------A 161
Query: 279 PKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFE 321
A++ FE QG+ E R +Y R V W+ + FE
Sbjct: 162 AAWDAFVDFETRQGQVEHVREVYSRYVMVHPVAATWLKWVAFE 204
>sp|Q6CJK2|CLF1_KLULA Pre-mRNA-splicing factor CLF1 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=CLF1 PE=3 SV=1
Length = 684
Score = 151 bits (381), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 101/296 (34%), Positives = 152/296 (51%), Gaps = 36/296 (12%)
Query: 14 TAEQILRESQEHFGEQKSVDPT---------ELYDYRLHKRNDFEDSIRRVPGDTAVWIN 64
TA+ IL+++ F ++K + T EL D++ KR ++E ++R D W+
Sbjct: 12 TADNILKDA---FSQKKQIAATTKADILDLEELKDWQRRKRTEYETVLKRNRLDLRQWMR 68
Query: 65 YAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLP 124
YA++E Q + RARS++E AL D LW +Y + E+ K INHARN+ DRA LP
Sbjct: 69 YAQFEFDQKDIRRARSIYERALLVDHGFIPLWIQYIDSEIKWKNINHARNLLDRATNALP 128
Query: 125 HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFE 184
VD+LW+KY+ +EE GN R I+ RW + P AW S+I+FE R E R ++
Sbjct: 129 RVDKLWFKYLLLEESLGNQGIVRGIYTRWCSFEPGPDAWDSFIEFETRCLNFENVRNIYS 188
Query: 185 RLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFA 244
+ V HP + +W+K+ +FE G+I R V+ AL+ L G E++ +FA
Sbjct: 189 KFVLVHPQ-IDTWLKWVRFEQTHGDISSVRTVFSFALD-TLTSFSGTPLVDIERVIGSFA 246
Query: 245 EFEERYKESE---------------SEALR-------KEFGDWVLIEDAIVGKGKA 278
+E E E SEAL+ K+FG +ED ++ K KA
Sbjct: 247 SWEASQGEYERSRTLYRLAVERWPISEALKEQQIQFEKKFGSSKNMEDIVIAKRKA 302
Score = 75.5 bits (184), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 95/433 (21%), Positives = 174/433 (40%), Gaps = 76/433 (17%)
Query: 19 LRESQEHFGEQKSVDPTELYDYRLHKRN-DFEDSIRRVPGDTAVWINYAKW--EGSQNEF 75
L+E Q F E+K + D + KR ++E ++ P + W Y E Q +
Sbjct: 275 LKEQQIQF-EKKFGSSKNMEDIVIAKRKAEYEQYLKSDPYHYSTWWVYIDLVEEKYQEQL 333
Query: 76 DRA-RSMWELALEEDCRNHTLWCKYAE--------FEMINKFINHARNVWDRAVAVLPH- 125
A +S ELA + + W +Y E+ + R+V+ + ++PH
Sbjct: 334 TSAFQSFIELAKPKSLVKDSSWKRYIRICVRYLVYLELTINDLPTIRSVYQDILDIIPHK 393
Query: 126 ---VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQV 182
+LW Y E N+ AR I + +P + + YI E+R ++ + R++
Sbjct: 394 KFTFGKLWIMYAEFEIRQNNLLKARKILGVSLGKSPKPKVFKYYINLEIRLKEFDRVRKL 453
Query: 183 FERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVA 242
+E+ + +P+ V SW+ YA+ E G+ DR+R +Y+ ++ + + D QL V
Sbjct: 454 YEKYIDFNPSSVQSWLDYAELEENLGDEDRSRGIYDISMSNNVGLSESD------QLIVI 507
Query: 243 FAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYE 302
+ YI FE E E+ R LYE
Sbjct: 508 ---------------------------------------QRYIAFETDAAEYEKARELYE 528
Query: 303 RLVERTKH-LKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQF 361
+ + +++ + +WI+ A FE++ P +E L ++ G + F
Sbjct: 529 KYLILSRYDVNIWINQALFESTI-------P--TETQLIAYQQSHQDGNFDDDGEEEFSF 579
Query: 362 ATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLP 421
+ + +FEK I+Y+K + ++R +L+ L E+ G + V A P
Sbjct: 580 EITPENKHHTRAIFEKAISYFKEHNED--KKRQQVLQSLLEYEKVHGNQETLEKVNARQP 637
Query: 422 KKLKKRRQIASDN 434
+ R ++ DN
Sbjct: 638 SLV--REKVTIDN 648
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 83/317 (26%), Positives = 135/317 (42%), Gaps = 82/317 (25%)
Query: 52 IRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINH 111
I RV G ++A WE SQ E++R+R+++ LA+E + L + +FE K
Sbjct: 238 IERVIG------SFASWEASQGEYERSRTLYRLAVERWPISEALKEQQIQFE---KKFGS 288
Query: 112 ARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-DQQAWLSYIKF- 169
++N ME+I +A + +++++ P W YI
Sbjct: 289 SKN---------------------MEDIV--IAKRKAEYEQYLKSDPYHYSTWWVYIDLV 325
Query: 170 ELRY-EQVELARQVFERLVQCHPNVV-SSWIKYAK--------FEMRRGEIDRARNVYER 219
E +Y EQ+ A Q F L + V SSW +Y + E+ ++ R+VY+
Sbjct: 326 EEKYQEQLTSAFQSFIELAKPKSLVKDSSWKRYIRICVRYLVYLELTINDLPTIRSVYQD 385
Query: 220 ALE----KKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGK 275
L+ KK G +L++ +AEFE R ++ RK G V
Sbjct: 386 ILDIIPHKKFTFG---------KLWIMYAEFEIR--QNNLLKARKILG---------VSL 425
Query: 276 GKAPKDKA---YIHFEKSQGERERRRALYERLVE-RTKHLKVWISYAKFEASALSKD--- 328
GK+PK K YI+ E E +R R LYE+ ++ ++ W+ YA+ E + +D
Sbjct: 426 GKSPKPKVFKYYINLEIRLKEFDRVRKLYEKYIDFNPSSVQSWLDYAELEENLGDEDRSR 485
Query: 329 -------GGNPDLSEAD 338
N LSE+D
Sbjct: 486 GIYDISMSNNVGLSESD 502
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 17/165 (10%)
Query: 159 DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYE 218
D + W+ Y +FE + + AR ++ER + + WI+Y E++ I+ ARN+ +
Sbjct: 62 DLRQWMRYAQFEFDQKDIRRARSIYERALLVDHGFIPLWIQYIDSEIKWKNINHARNLLD 121
Query: 219 RALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKA 278
RA + ++L+ + EE +R + W E G
Sbjct: 122 RA---------TNALPRVDKLWFKYLLLEESL--GNQGIVRGIYTRWCSFE-----PGPD 165
Query: 279 PKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEAS 323
D ++I FE E R +Y + V + W+ + +FE +
Sbjct: 166 AWD-SFIEFETRCLNFENVRNIYSKFVLVHPQIDTWLKWVRFEQT 209
>sp|Q12309|CLF1_YEAST Pre-mRNA-splicing factor CLF1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=CLF1 PE=1 SV=1
Length = 687
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/307 (33%), Positives = 155/307 (50%), Gaps = 31/307 (10%)
Query: 1 MAKKNPRGAPIRKTAEQILRE----SQEHFGEQKS--VDPTELYDYRLHKRNDFEDSIRR 54
M P +AEQILR+ Q+ G +D EL +Y+ KR ++E ++R
Sbjct: 1 MDTLEPTAVDTHVSAEQILRDVYKKGQKARGSTNIDILDLEELREYQRRKRTEYEGYLKR 60
Query: 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARN 114
D WI YA++E Q++ RARS++E AL D LW +Y + E+ K INHARN
Sbjct: 61 NRLDMGQWIRYAQFEIEQHDMRRARSIFERALLVDSSFIPLWIRYIDAELKVKCINHARN 120
Query: 115 VWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYE 174
+ +RA++ LP VD+LWYKY+ +EE NV R ++ +W P AW S++ FE+R +
Sbjct: 121 LMNRAISTLPRVDKLWYKYLIVEESLNNVEIVRSLYTKWCSLEPGVNAWNSFVDFEIRQK 180
Query: 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK--KLADGDGDD 232
R+++ + V HP + +W+K+ +FE R G + R+VY A++ L +
Sbjct: 181 NWNGVREIYSKYVMAHPQ-MQTWLKWVRFENRHGNTEFTRSVYSLAIDTVANLQNLQIWS 239
Query: 233 DEGAEQLFVAFAEFEERYKESE-SEAL---------------------RKEFGDWVLIED 270
D +L +FA +E +E E S AL K+FGD IE+
Sbjct: 240 DMEVAKLVNSFAHWEAAQQEYERSSALYQIAIEKWPSNQLLKAGLLDFEKQFGDINSIEE 299
Query: 271 AIVGKGK 277
I K K
Sbjct: 300 TISYKRK 306
Score = 74.3 bits (181), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 106/479 (22%), Positives = 197/479 (41%), Gaps = 122/479 (25%)
Query: 64 NYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE-------MINKFINHARNV- 115
++A WE +Q E++R+ +++++A+E+ N L +FE I + I++ R +
Sbjct: 249 SFAHWEAAQQEYERSSALYQIAIEKWPSNQLLKAGLLDFEKQFGDINSIEETISYKRKME 308
Query: 116 WDRAVAVLPHVDQLWYKYI----------------------RMEEIAGNVAAARLIFDRW 153
++ ++ + W+ Y+ R +E++ NV R I+ W
Sbjct: 309 YETILSNNAYDYDTWWLYLDLISESFPKQIMQTFEKAIVDSRPKELSKNVQWKRYIY-LW 367
Query: 154 M-------------------------------HWTPDQQAWLSYIKFELRYEQVELARQV 182
M H+T + WL Y KF +R++ V AR++
Sbjct: 368 MRYICYVELELENSLLEEELFQRLIDDIIPHKHFTFSK-IWLMYAKFLIRHDDVPKARKI 426
Query: 183 FERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVA 242
+ + P ++ Y + E++ E DR R +YE+ +E + +D Q++
Sbjct: 427 LGKAIGLCPKA-KTFKGYIELEVKLKEFDRVRKIYEKFIEFQPSDL---------QIWSQ 476
Query: 243 FAEFEERYKESESEALRKEFGDWVLI-----------EDAIVGKGKAPKDKAYIHFEKSQ 291
+ E EE GDW + D + + K + YI FE
Sbjct: 477 YGELEEN------------LGDWDRVRGIYTIALDENSDFLTKEAKIVLLQKYITFETES 524
Query: 292 GERERRRALYERLVERTKHL-KVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGA 350
E E+ R LY R +E ++ + WI +A ++ S ++ DL + + +++
Sbjct: 525 QEFEKARKLYRRYLELNQYSPQSWIEFAMYQTSTPTEQ------QLLDLAKLQSENVDED 578
Query: 351 RRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGEL 410
+F + L + VFE+ I ++K + + R+ +LE + E ++G
Sbjct: 579 --------IEFEITDENKLEARKVFEEAIVFFKEKDDK--QGRLSILEALKDYEETYGTE 628
Query: 411 GDVNLVQAMLPKKLKKRRQIASDNGLSAGYEEYIDYLFPEESQKTNF---KILEAASKW 466
D V+ PK +KK R NG+ EE++DY+FP++ K LE A KW
Sbjct: 629 LDQETVKKRFPKVIKKVR---LQNGVE---EEFVDYIFPDDIDDDKPKPSKFLELAKKW 681
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 69/163 (42%), Gaps = 17/163 (10%)
Query: 159 DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYE 218
D W+ Y +FE+ + AR +FER + + + WI+Y E++ I+ ARN+
Sbjct: 64 DMGQWIRYAQFEIEQHDMRRARSIFERALLVDSSFIPLWIRYIDAELKVKCINHARNLMN 123
Query: 219 RALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKA 278
RA+ ++L+ + EE + E +R + W +E +
Sbjct: 124 RAISTL---------PRVDKLWYKYLIVEESL--NNVEIVRSLYTKWCSLEPGVNAWN-- 170
Query: 279 PKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFE 321
+++ FE Q R +Y + V ++ W+ + +FE
Sbjct: 171 ----SFVDFEIRQKNWNGVREIYSKYVMAHPQMQTWLKWVRFE 209
Score = 47.0 bits (110), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/239 (22%), Positives = 105/239 (43%), Gaps = 39/239 (16%)
Query: 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDR 118
+ +W+ YAK+ ++ +AR + A+ C + Y E E+ K + R ++++
Sbjct: 404 SKIWLMYAKFLIRHDDVPKARKILGKAIGL-CPKAKTFKGYIELEVKLKEFDRVRKIYEK 462
Query: 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD---QQAWL----SYIKFEL 171
+ P Q+W +Y +EE G+ R I+ + D ++A + YI FE
Sbjct: 463 FIEFQPSDLQIWSQYGELEENLGDWDRVRGIYTIALDENSDFLTKEAKIVLLQKYITFET 522
Query: 172 RYEQVELARQVFERLVQCHPNVVSSWIKYAKFE--------------MRRGEID------ 211
++ E AR+++ R ++ + SWI++A ++ ++ +D
Sbjct: 523 ESQEFEKARKLYRRYLELNQYSPQSWIEFAMYQTSTPTEQQLLDLAKLQSENVDEDIEFE 582
Query: 212 -------RARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERY-KESESEALRKEF 262
AR V+E A+ + + DD +G + A ++EE Y E + E ++K F
Sbjct: 583 ITDENKLEARKVFEEAI---VFFKEKDDKQGRLSILEALKDYEETYGTELDQETVKKRF 638
>sp|Q6FW76|CLF1_CANGA Pre-mRNA-splicing factor CLF1 OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CLF1
PE=3 SV=1
Length = 695
Score = 142 bits (357), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 106/327 (32%), Positives = 161/327 (49%), Gaps = 31/327 (9%)
Query: 14 TAEQILRESQEHFGEQKSVDPT------ELYDYRLHKRNDFEDSIRRVPGDTAVWINYAK 67
T IL++ + +Q S+D EL D + KR +FE ++R D W+ YA
Sbjct: 10 TDNDILKDVYKSQNKQFSIDAIDILDLEELKDVQRRKRTEFEGYLKRNRLDVKQWMRYAV 69
Query: 68 WEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD 127
+E Q++ RARS++E AL LW +Y E E+ +INHARN+ +RA+ LP VD
Sbjct: 70 FEIEQHDMRRARSIFERALRVHISYVPLWIRYIESELKLGYINHARNILERAITKLPRVD 129
Query: 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLV 187
+LWYKY+ +EE + R +F +W P W S+ FE+R E+ E R ++ + V
Sbjct: 130 KLWYKYLIVEESLAHFDIVRNLFQKWCSLEPAAHVWDSFTDFEVRQERYEDVRNIYSKYV 189
Query: 188 QCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFE 247
HP S+W K+ FE+R G R+VY AL+ +A + +E + EF
Sbjct: 190 LIHPQ-FSTWRKWINFEVRYGSTKTVRSVYSLALDALIAYSES-RNELVDDCINLIVEF- 246
Query: 248 ERYKESESEALRKEF-GDWVLIEDAIVGKGKAPK----DKAYIHFEKSQGERE------- 295
S+ EAL+KE+ L+E AI K PK + A + FE+ G E
Sbjct: 247 -----SKWEALQKEYIRSKSLLEIAI---QKWPKSNTLNNALLQFEREHGTAETLENTII 298
Query: 296 -RRRALYERLV-ERTKHLKVWISYAKF 320
R+ YE ++ E+ W+ Y +
Sbjct: 299 LNRKKHYEDILNEKVYDYDTWLLYLQL 325
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 25/184 (13%)
Query: 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE--------MINKFINHARN 114
+ ++KWE Q E+ R++S+ E+A+++ +++TL +FE + N I + +
Sbjct: 244 VEFSKWEALQKEYIRSKSLLEIAIQKWPKSNTLNNALLQFEREHGTAETLENTIILNRKK 303
Query: 115 VWDRAVAVLPHVDQLWYKYIRM---------EEIAGNVAAARLIFDRWM--HWTPDQQAW 163
++ + + W Y+++ E NV A + R +W W
Sbjct: 304 HYEDILNEKVYDYDTWLLYLQLLENNYPKLVMEAFSNVLNAAIPTSRTKDKYWKQYILIW 363
Query: 164 LSYIKF-ELRYEQVELARQVFERLVQ-CHPN----VVSSWIKYAKFEMRRGEIDRARNVY 217
+ Y+ F EL + L Q FE L+ PN WI YA+FE+R+ +++AR++
Sbjct: 364 IKYLTFLELTINDIPLCGQKFEELIHNIIPNDDFTFSKIWILYAEFEIRQDNLEKARSIL 423
Query: 218 ERAL 221
R+L
Sbjct: 424 GRSL 427
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 6/128 (4%)
Query: 95 LWCKYAEFE--MINKFINHARNVWDRAVAVLPHVD----QLWYKYIRMEEIAGNVAAARL 148
+W KY F IN + + ++P+ D ++W Y E N+ AR
Sbjct: 362 IWIKYLTFLELTINDIPLCGQKFEELIHNIIPNDDFTFSKIWILYAEFEIRQDNLEKARS 421
Query: 149 IFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRG 208
I R + P ++ + YI E + + + R ++E ++ P + +W Y +FE G
Sbjct: 422 ILGRSLGLCPKRKTFKYYIDLETKLREFDRVRILYENFLKFDPLNLDTWRAYVEFEDSLG 481
Query: 209 EIDRARNV 216
+ R R+V
Sbjct: 482 DEVRVRSV 489
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 51/100 (51%), Gaps = 11/100 (11%)
Query: 370 SSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRRQ 429
++ VFE+ +NY+K + E+R +L+ +++ E +G++ ++ LP + +
Sbjct: 595 NARDVFERALNYFKEIKRD--EDRARILQSYVDFEGQYGDISSRQRIEKRLPSIVNGIKD 652
Query: 430 IASDNGLSAGYEEYIDYLFPEESQKTNF---KILEAASKW 466
I +GL + I Y FP++ K+N IL A KW
Sbjct: 653 I---DGLKT---QNITYTFPDDENKSNIDTSNILALAHKW 686
>sp|Q14690|RRP5_HUMAN Protein RRP5 homolog OS=Homo sapiens GN=PDCD11 PE=1 SV=3
Length = 1871
Score = 60.5 bits (145), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/233 (22%), Positives = 105/233 (45%), Gaps = 22/233 (9%)
Query: 4 KNPRGAPIRKTAEQILRESQEHFGEQKSVDPTELYDYRL-HKRNDFEDSIRRVPGDTAVW 62
+ P A I+K+ ++ E Q+ E ++ + R +DF+ + P + +W
Sbjct: 1563 EKPHQATIKKSKKERELEKQKAEKELSRIEEALMDPGRQPESADDFDRLVLSSPNSSILW 1622
Query: 63 INYAKWEGSQNEFDRARSMWELALE-----EDCRNHTLWCKYAEFEMINKFINHARNVWD 117
+ Y + E ++AR++ E AL+ E+ +W E + V++
Sbjct: 1623 LQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFE 1682
Query: 118 RAV------AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSYIKFE 170
RAV V H+ ++ K + +E AG +++R + + ++ W+ Y F
Sbjct: 1683 RAVQYNEPLKVFLHLADIYAKSEKFQE-AGE------LYNRMLKRFRQEKAVWIKYGAFL 1735
Query: 171 LRYEQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRGEIDRARNVYERAL 221
LR Q + +V +R ++C P+ V K+A+ E + G+ +RA+ ++E L
Sbjct: 1736 LRRSQAAASHRVLQRALECLPSKEHVDVIAKFAQLEFQLGDAERAKAIFENTL 1788
Score = 54.3 bits (129), Expect = 2e-06, Method: Composition-based stats.
Identities = 37/157 (23%), Positives = 73/157 (46%), Gaps = 12/157 (7%)
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQ-- 128
S ++FDR L L + LW +Y F + I AR V +RA+ + ++
Sbjct: 1604 SADDFDR------LVLSSP-NSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQE 1656
Query: 129 ---LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFER 185
+W + +E + G+ + +F+R + + + +L + E+ + A +++ R
Sbjct: 1657 KLNVWVALLNLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYAKSEKFQEAGELYNR 1716
Query: 186 LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222
+++ + WIKY F +RR + + V +RALE
Sbjct: 1717 MLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALE 1753
Score = 50.8 bits (120), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 183 FERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVA 242
F+RLV PN W++Y F ++ EI++AR V ERAL+ +++ ++VA
Sbjct: 1608 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTI----SFREEQEKLNVWVA 1663
Query: 243 FAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRR---A 299
E Y ES L K F V + + K ++H + E+ +
Sbjct: 1664 LLNLENMYGSQES--LTKVFERAVQYNEPL---------KVFLHLADIYAKSEKFQEAGE 1712
Query: 300 LYERLVERTKHLK-VWISYAKF 320
LY R+++R + K VWI Y F
Sbjct: 1713 LYNRMLKRFRQEKAVWIKYGAF 1734
>sp|A1A5S1|PRP6_RAT Pre-mRNA-processing factor 6 OS=Rattus norvegicus GN=Prpf6 PE=2
SV=1
Length = 941
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 121/287 (42%), Gaps = 35/287 (12%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
W+ A + N + AR+++ AL+ ++W + A FE + + RAV
Sbjct: 542 TWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELA 179
A P + LW + + +AG+V AAR I P+ ++ WL+ +K E + E A
Sbjct: 602 AHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERA 661
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE-----KKLADGDGDDDE 234
R++ + P ++K K E G I A+ + E AL KL G +E
Sbjct: 662 RRLLAKARSSAP-TARVFMKSVKLEWVLGNITAAQELCEEALRHYEDFPKLWMMKGQIEE 720
Query: 235 GAEQLFVAFAEFEERYKESESEALRK---EFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQ 291
E + ER +E+ ++ L+K W+L+ E+
Sbjct: 721 QGELM--------ERAREAYNQGLKKCPHSTPLWLLLS----------------RLEEKI 756
Query: 292 GERERRRALYERL-VERTKHLKVWISYAKFEASALSKDGGNPDLSEA 337
G+ R RA+ E+ ++ K+ +W+ + E A K+ N +++A
Sbjct: 757 GQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKA 803
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 86/174 (49%), Gaps = 2/174 (1%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK 107
+ ++ P +W+ AK + + ARS+ LA + + + +W + E N
Sbjct: 597 LQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENN 656
Query: 108 FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSY 166
AR + +A + P +++ K +++E + GN+ AA+ + + + H+ + W+
Sbjct: 657 EYERARRLLAKARSSAPTA-RVFMKSVKLEWVLGNITAAQELCEEALRHYEDFPKLWMMK 715
Query: 167 IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ E + E +E AR+ + + ++ P+ W+ ++ E + G++ RAR + E++
Sbjct: 716 GQIEEQGELMERAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKS 769
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 67/185 (36%), Gaps = 34/185 (18%)
Query: 56 PGDTAVWINYAKWEGSQNEFDRARSM---------------------WELA--------L 86
P +W+ K E NE++RAR + W L
Sbjct: 639 PNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNITAAQELC 698
Query: 87 EEDCRNH----TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGN 142
EE R++ LW + E + + AR +++ + PH LW R+EE G
Sbjct: 699 EEALRHYEDFPKLWMMKGQIEEQGELMERAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQ 758
Query: 143 VAAARLIFDRWMHWTPDQQA-WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYA 201
+ AR I ++ P WL ++ E R +A + + +Q PN W +
Sbjct: 759 LTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAV 818
Query: 202 KFEMR 206
E R
Sbjct: 819 FLEAR 823
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R + +++ P T +W+ ++ E + RAR++ E + ++ +N LW + E
Sbjct: 729 REAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEY 788
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
N A + +A+ P+ LW + + +E + + H D L
Sbjct: 789 RAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEH---DPHVLL 845
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ K ++ AR+ F R V+ ++ +W + KFE++ G ++ V +R
Sbjct: 846 AVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRC 901
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 36/186 (19%)
Query: 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129
G N+ +AR + + E + + W A E + + ARN+ + + P + +
Sbjct: 286 GDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 345
Query: 130 WYK---------------------------YIRMEEIAGNVAAARLIFDRWMHWTPDQ-Q 161
W + YIR E+ ++ A + + + + P+ +
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVR 405
Query: 162 AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
W + ++ E+ E AR + R V+C P V W+ A+ E + AR V +A
Sbjct: 406 LWKAAVEL----EEPEDARIMLSRAVECCPTSVELWLALARLET----YENARKVLNKAR 457
Query: 222 EKKLAD 227
E D
Sbjct: 458 ENIPTD 463
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
RN P VW+ A+ + D A+++ A+ ++ ++ + AE E
Sbjct: 329 RNLIMKGTEMCPKSEDVWLEAARLQPG----DTAKAVVAQAVRHLPQSVRIYIRAAELET 384
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAW 163
I + V +A+ +P+ +LW + +EE AR++ R + P + W
Sbjct: 385 ---DIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED----ARIMLSRAVECCPTSVELW 437
Query: 164 LSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223
L+ R E E AR+V + + P WI AK E G + +RA+
Sbjct: 438 LALA----RLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITS 493
Query: 224 KLADG 228
A+G
Sbjct: 494 LRANG 498
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 36/227 (15%)
Query: 16 EQILRESQEHFGE-----QKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEG 70
+++LR++ EH + +V+ E D R+ ++ P +W+ A+ E
Sbjct: 390 KRVLRKALEHVPNSVRLWKAAVELEEPEDARIM----LSRAVECCPTSVELWLALARLET 445
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD--- 127
+N AR + A E + +W A+ E N + DRA+ L
Sbjct: 446 YEN----ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEI 501
Query: 128 --QLWYKYIRMEEIAGNVAAARLIF-----------DRWMHWTPDQQAWLSYIKFELRYE 174
+ W + + AG+VA + + DR W D + +++
Sbjct: 502 NREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAH-------N 554
Query: 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
+E AR ++ +Q P+ S W++ A FE G + + +RA+
Sbjct: 555 ALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
>sp|Q2KJJ0|PRP6_BOVIN Pre-mRNA-processing factor 6 OS=Bos taurus GN=PRPF6 PE=2 SV=1
Length = 941
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 86/174 (49%), Gaps = 2/174 (1%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK 107
+ ++ P +W+ AK + + ARS+ LA + + + +W + E N
Sbjct: 597 LQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENN 656
Query: 108 FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSY 166
AR + +A + P +++ K +++E + GN+ AA+ + + + H+ + W+
Sbjct: 657 EYERARRLLAKARSSAPTA-RVFMKSVKLEWVLGNLVAAQELCEEALKHYEDFPKLWMMK 715
Query: 167 IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ E + E VE AR+ + + ++ P+ W+ ++ E + G++ RAR + E++
Sbjct: 716 GQIEEQEELVEKAREAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKS 769
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 74/163 (45%), Gaps = 2/163 (1%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
W+ A + N + AR+++ AL+ ++W + A FE + + RAV
Sbjct: 542 TWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELA 179
A P + LW + + +AG+V AAR I P+ ++ WL+ +K E + E A
Sbjct: 602 AHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERA 661
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222
R++ + P ++K K E G + A+ + E AL+
Sbjct: 662 RRLLAKARSSAP-TARVFMKSVKLEWVLGNLVAAQELCEEALK 703
Score = 49.3 bits (116), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 70/164 (42%), Gaps = 3/164 (1%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R + +++ P T +W+ ++ E + RAR++ E + ++ +N LW + E
Sbjct: 729 REAYNQGLKKCPHSTPLWLLLSRLEEKVGQLTRARAILEKSRLKNPKNPGLWLESVRLEY 788
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
N A + +A+ P+ LW + I +E + + H D L
Sbjct: 789 RAGLKNIASTLMAKALQECPNSGVLWSEAIFLEARPQRKTKSVDALKKCEH---DPHVLL 845
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRG 208
+ K ++ AR+ F R V+ ++ +W + KFE++ G
Sbjct: 846 AVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHG 889
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 36/186 (19%)
Query: 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129
G N+ +AR + + E + + W A E + + ARN+ + + P + +
Sbjct: 286 GDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 345
Query: 130 WYK---------------------------YIRMEEIAGNVAAARLIFDRWMHWTPDQ-Q 161
W + YIR E+ ++ A + + + + P+ +
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVR 405
Query: 162 AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
W + ++ E+ E AR + R V+C P V W+ A+ E + AR V +A
Sbjct: 406 LWKAAVEL----EEPEDARIMLSRAVECCPTSVELWLALARLET----YENARKVLNKAR 457
Query: 222 EKKLAD 227
E D
Sbjct: 458 ENIPTD 463
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
RN P VW+ A+ + D A+++ A+ ++ ++ + AE E
Sbjct: 329 RNLIMKGTEMCPKSEDVWLEAARLQPG----DTAKAVVAQAVRHLPQSVRIYIRAAELET 384
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAW 163
I + V +A+ +P+ +LW + +EE AR++ R + P + W
Sbjct: 385 ---DIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED----ARIMLSRAVECCPTSVELW 437
Query: 164 LSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223
L+ R E E AR+V + + P WI AK E G + +RA+
Sbjct: 438 LALA----RLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITS 493
Query: 224 KLADG 228
A+G
Sbjct: 494 LRANG 498
Score = 39.7 bits (91), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 36/227 (15%)
Query: 16 EQILRESQEHFGE-----QKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEG 70
+++LR++ EH + +V+ E D R+ ++ P +W+ A+ E
Sbjct: 390 KRVLRKALEHVPNSVRLWKAAVELEEPEDARIM----LSRAVECCPTSVELWLALARLET 445
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD--- 127
+N AR + A E + +W A+ E N + DRA+ L
Sbjct: 446 YEN----ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEI 501
Query: 128 --QLWYKYIRMEEIAGNVAAARLIF-----------DRWMHWTPDQQAWLSYIKFELRYE 174
+ W + + AG+VA + + DR W D + +++
Sbjct: 502 NREQWIQDAEECDKAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAH-------N 554
Query: 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
+E AR ++ +Q P+ S W++ A FE G + + +RA+
Sbjct: 555 ALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
>sp|Q91YR7|PRP6_MOUSE Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=2 SV=1
Length = 941
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 87/174 (50%), Gaps = 2/174 (1%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK 107
+ ++ P +W+ AK + + ARS+ LA + + + +W + E N
Sbjct: 597 LQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENN 656
Query: 108 FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSY 166
AR + +A + P +++ K +++E + GN++AA+ + + + H+ + W+
Sbjct: 657 EYERARRLLAKARSSAPTA-RVFMKSVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMK 715
Query: 167 IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ E + E +E AR+ + + ++ P+ W+ ++ E + G++ RAR + E++
Sbjct: 716 GQIEEQGELMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKS 769
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 35/287 (12%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
W+ A + N + AR+++ AL+ ++W + A FE + + RAV
Sbjct: 542 TWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELA 179
A P + LW + + +AG+V AAR I P+ ++ WL+ +K E + E A
Sbjct: 602 AHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEYERA 661
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE-----KKLADGDGDDDE 234
R++ + P ++K K E G I A+ + E AL KL G +E
Sbjct: 662 RRLLAKARSSAP-TARVFMKSVKLEWVLGNISAAQELCEEALRHYEDFPKLWMMKGQIEE 720
Query: 235 GAEQLFVAFAEFEERYKESESEALRK---EFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQ 291
E + E+ +E+ ++ L+K W+L+ E+
Sbjct: 721 QGELM--------EKAREAYNQGLKKCPHSTPLWLLLS----------------RLEEKI 756
Query: 292 GERERRRALYERL-VERTKHLKVWISYAKFEASALSKDGGNPDLSEA 337
G+ R RA+ E+ ++ K+ +W+ + E A K+ N +++A
Sbjct: 757 GQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKA 803
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R + +++ P T +W+ ++ E + RAR++ E + ++ +N LW + E
Sbjct: 729 REAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEY 788
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
N A + +A+ P+ LW + + +E + + H D L
Sbjct: 789 RAGLKNIANTLMAKALQECPNSGILWSEAVFLEARPQRKTKSVDALKKCEH---DPHVLL 845
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ K ++ AR+ F R V+ ++ +W + KFE++ G ++ V +R
Sbjct: 846 AVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRC 901
Score = 48.9 bits (115), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 67/185 (36%), Gaps = 34/185 (18%)
Query: 56 PGDTAVWINYAKWEGSQNEFDRARSM---------------------WELA--------L 86
P +W+ K E NE++RAR + W L
Sbjct: 639 PNSEEIWLAAVKLESENNEYERARRLLAKARSSAPTARVFMKSVKLEWVLGNISAAQELC 698
Query: 87 EEDCRNH----TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGN 142
EE R++ LW + E + + AR +++ + PH LW R+EE G
Sbjct: 699 EEALRHYEDFPKLWMMKGQIEEQGELMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQ 758
Query: 143 VAAARLIFDRWMHWTPDQQA-WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYA 201
+ AR I ++ P WL ++ E R +A + + +Q PN W +
Sbjct: 759 LTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQECPNSGILWSEAV 818
Query: 202 KFEMR 206
E R
Sbjct: 819 FLEAR 823
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 36/186 (19%)
Query: 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129
G N+ +AR + + E + + W A E + + ARN+ + + P + +
Sbjct: 286 GDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 345
Query: 130 WYK---------------------------YIRMEEIAGNVAAARLIFDRWMHWTPDQ-Q 161
W + YIR E+ ++ A + + + + P+ +
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVR 405
Query: 162 AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
W + ++ E+ E AR + R V+C P V W+ A+ E + AR V +A
Sbjct: 406 LWKAAVEL----EEPEDARIMLSRAVECCPTSVELWLALARLET----YENARKVLNKAR 457
Query: 222 EKKLAD 227
E D
Sbjct: 458 ENIPTD 463
Score = 41.2 bits (95), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
RN P VW+ A+ + D A+++ A+ ++ ++ + AE E
Sbjct: 329 RNLIMKGTEMCPKSEDVWLEAARLQPG----DTAKAVVAQAVRHLPQSVRIYIRAAELET 384
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAW 163
I + V +A+ +P+ +LW + +EE AR++ R + P + W
Sbjct: 385 ---DIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED----ARIMLSRAVECCPTSVELW 437
Query: 164 LSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223
L+ R E E AR+V + + P WI AK E G + +RA+
Sbjct: 438 LALA----RLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITS 493
Query: 224 KLADG 228
A+G
Sbjct: 494 LRANG 498
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 36/227 (15%)
Query: 16 EQILRESQEHFGE-----QKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEG 70
+++LR++ EH + +V+ E D R+ ++ P +W+ A+ E
Sbjct: 390 KRVLRKALEHVPNSVRLWKAAVELEEPEDARIM----LSRAVECCPTSVELWLALARLET 445
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD--- 127
+N AR + A E + +W A+ E N + DRA+ L
Sbjct: 446 YEN----ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEI 501
Query: 128 --QLWYKYIRMEEIAGNVAAARLIF-----------DRWMHWTPDQQAWLSYIKFELRYE 174
+ W + + AG+VA + + DR W D + +++
Sbjct: 502 NREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAH-------N 554
Query: 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
+E AR ++ +Q P+ S W++ A FE G + + +RA+
Sbjct: 555 ALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
>sp|Q6NS46|RRP5_MOUSE Protein RRP5 homolog OS=Mus musculus GN=Pdcd11 PE=2 SV=2
Length = 1862
Score = 56.6 bits (135), Expect = 4e-07, Method: Composition-based stats.
Identities = 43/190 (22%), Positives = 88/190 (46%), Gaps = 21/190 (11%)
Query: 46 NDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALE-----EDCRNHTLWCKYA 100
+DF+ + P + +W+ Y + E ++AR++ E AL+ E+ +W
Sbjct: 1597 DDFDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALL 1656
Query: 101 EFEMINKFINHARNVWDRAV------AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM 154
E + V++RAV V H+ ++ K + +E AG +++R +
Sbjct: 1657 NLENMYGSQESLTKVFERAVQYNEPLKVFLHLADIYTKSEKYKE-AGE------LYNRML 1709
Query: 155 -HWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHP--NVVSSWIKYAKFEMRRGEID 211
+ ++ W+ Y F L Q + +V +R ++C P V +K+A+ E + G+++
Sbjct: 1710 KRFRQEKAVWIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVE 1769
Query: 212 RARNVYERAL 221
RA+ ++E L
Sbjct: 1770 RAKAIFENTL 1779
Score = 51.2 bits (121), Expect = 2e-05, Method: Composition-based stats.
Identities = 41/142 (28%), Positives = 65/142 (45%), Gaps = 19/142 (13%)
Query: 183 FERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVA 242
F+RLV PN W++Y F ++ EI++AR V ERAL+ +++ ++VA
Sbjct: 1599 FDRLVLSSPNSSILWLQYMAFHLQATEIEKARAVAERALKTI----SFREEQEKLNVWVA 1654
Query: 243 FAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRR---A 299
E Y ES L K F V + + K ++H + E+ +
Sbjct: 1655 LLNLENMYGSQES--LTKVFERAVQYNEPL---------KVFLHLADIYTKSEKYKEAGE 1703
Query: 300 LYERLVERTKHLK-VWISYAKF 320
LY R+++R + K VWI Y F
Sbjct: 1704 LYNRMLKRFRQEKAVWIKYGAF 1725
>sp|O94906|PRP6_HUMAN Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1
Length = 941
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 123/287 (42%), Gaps = 35/287 (12%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
W+ A + N + AR+++ AL+ ++W + A FE + + RAV
Sbjct: 542 TWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELA 179
A P + LW + + +AG+V AAR I P+ ++ WL+ +K E ++ E A
Sbjct: 602 AHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERA 661
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE-----KKLADGDGDDDE 234
R++ + P ++K K E + I A+++ E AL KL G +E
Sbjct: 662 RRLLAKARSSAP-TARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEE 720
Query: 235 GAEQLFVAFAEFEERYKESESEALRK---EFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQ 291
E + E+ +E+ ++ L+K W+L+ E+
Sbjct: 721 QKEMM--------EKAREAYNQGLKKCPHSTPLWLLLS----------------RLEEKI 756
Query: 292 GERERRRALYERL-VERTKHLKVWISYAKFEASALSKDGGNPDLSEA 337
G+ R RA+ E+ ++ K+ +W+ + E A K+ N +++A
Sbjct: 757 GQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKA 803
Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/174 (20%), Positives = 85/174 (48%), Gaps = 2/174 (1%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK 107
+ ++ P +W+ AK + + ARS+ LA + + + +W + E N
Sbjct: 597 LQRAVAHCPKAEVLWLMGAKSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESEND 656
Query: 108 FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSY 166
AR + +A + P +++ K +++E + N+ AA+ + + + H+ + W+
Sbjct: 657 EYERARRLLAKARSSAPTA-RVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMK 715
Query: 167 IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ E + E +E AR+ + + ++ P+ W+ ++ E + G++ RAR + E++
Sbjct: 716 GQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKS 769
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 3/176 (1%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R + +++ P T +W+ ++ E + RAR++ E + ++ +N LW + E
Sbjct: 729 REAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEY 788
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
N A + +A+ P+ LW + I +E + + H D L
Sbjct: 789 RAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEH---DPHVLL 845
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ K ++ AR+ F R V+ ++ +W + KFE++ G ++ V +R
Sbjct: 846 AVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRC 901
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 59/147 (40%), Gaps = 1/147 (0%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
V++ K E Q+ A+ + E AL LW + E + + AR +++ +
Sbjct: 677 VFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGL 736
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA-WLSYIKFELRYEQVELA 179
PH LW R+EE G + AR I ++ P WL ++ E R +A
Sbjct: 737 KKCPHSTPLWLLLSRLEEKIGQLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIA 796
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMR 206
+ + +Q PN W + E R
Sbjct: 797 NTLMAKALQECPNSGILWSEAIFLEAR 823
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 72/168 (42%), Gaps = 2/168 (1%)
Query: 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNV 115
P +W+ K E +E++RAR + A ++ K + E + I A+++
Sbjct: 639 PNSEEIWLAAVKLESENDEYERARRLLAKA-RSSAPTARVFMKSVKLEWVQDNIRAAQDL 697
Query: 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA-WLSYIKFELRYE 174
+ A+ +LW ++EE + AR +++ + P WL + E +
Sbjct: 698 CEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIG 757
Query: 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222
Q+ AR + E+ +P W++ + E R G + A + +AL+
Sbjct: 758 QLTRARAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQ 805
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 36/186 (19%)
Query: 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129
G N+ +AR + + E + + W A E + + ARN+ + + P + +
Sbjct: 286 GDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 345
Query: 130 WYK---------------------------YIRMEEIAGNVAAARLIFDRWMHWTPDQ-Q 161
W + YIR E+ ++ A + + + + P+ +
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQSVRIYIRAAELETDIRAKKRVLRKALEHVPNSVR 405
Query: 162 AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
W + ++ E+ E AR + R V+C P V W+ A+ E + AR V +A
Sbjct: 406 LWKAAVEL----EEPEDARIMLSRAVECCPTSVELWLALARLET----YENARKVLNKAR 457
Query: 222 EKKLAD 227
E D
Sbjct: 458 ENIPTD 463
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 75/185 (40%), Gaps = 16/185 (8%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
RN P VW+ A+ + D A+++ A+ ++ ++ + AE E
Sbjct: 329 RNLIMKGTEMCPKSEDVWLEAARLQPG----DTAKAVVAQAVRHLPQSVRIYIRAAELET 384
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAW 163
I + V +A+ +P+ +LW + +EE AR++ R + P + W
Sbjct: 385 ---DIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED----ARIMLSRAVECCPTSVELW 437
Query: 164 LSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223
L+ R E E AR+V + + P WI AK E G + +RA+
Sbjct: 438 LALA----RLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITS 493
Query: 224 KLADG 228
A+G
Sbjct: 494 LRANG 498
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/227 (20%), Positives = 89/227 (39%), Gaps = 36/227 (15%)
Query: 16 EQILRESQEHFGE-----QKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEG 70
+++LR++ EH + +V+ E D R+ ++ P +W+ A+ E
Sbjct: 390 KRVLRKALEHVPNSVRLWKAAVELEEPEDARIM----LSRAVECCPTSVELWLALARLET 445
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD--- 127
+N AR + A E + +W A+ E N + DRA+ L
Sbjct: 446 YEN----ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEI 501
Query: 128 --QLWYKYIRMEEIAGNVAAARLIF-----------DRWMHWTPDQQAWLSYIKFELRYE 174
+ W + + AG+VA + + DR W D + +++
Sbjct: 502 NREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAH-------N 554
Query: 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
+E AR ++ +Q P+ S W++ A FE G + + +RA+
Sbjct: 555 ALECARAIYAYALQVFPSKKSVWLRAAYFEKNHGTRESLEALLQRAV 601
>sp|Q12381|PRP1_SCHPO Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp1 PE=1 SV=1
Length = 906
Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 5/193 (2%)
Query: 30 KSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEED 89
++V+ +LY + E ++ P +W+ YAK + N+ AR++ A E +
Sbjct: 549 RAVELEKLYGTTESVCSILEKAVESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYN 608
Query: 90 CRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLI 149
+ +W E +N AR + RA + +++W K I +E I A +
Sbjct: 609 SNSEEIWLAAVRIEFVNNENERARKLLARA-RIESGTERIWTKSISLERILDEKDRALQL 667
Query: 150 FDRWMHWTP--DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR 207
+ + P D+ + FE + EQ+ELAR + + P + W+ AK E ++
Sbjct: 668 LENALKIYPHYDKLYMMKGQIFEDK-EQIELARDAYLAGTKVCPYSIPLWLLLAKLEEKQ 726
Query: 208 GEIDRARNVYERA 220
I RAR V++RA
Sbjct: 727 SVI-RARVVFDRA 738
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 73/163 (44%), Gaps = 2/163 (1%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
W++ A+ ++ D AR+++ +L ++ LW + E E + ++ ++AV
Sbjct: 512 TWLDDAQSFIARKCIDCARAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAV 571
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELA 179
P + LW Y + + ++A AR I R + + ++ WL+ ++ E + E A
Sbjct: 572 ESCPKAEILWLLYAKERKNVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERA 631
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222
R++ R + W K E E DRA + E AL+
Sbjct: 632 RKLLAR-ARIESGTERIWTKSISLERILDEKDRALQLLENALK 673
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 70/166 (42%), Gaps = 7/166 (4%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R F S+R P +W+ + E + S+ E A+E + LW YA+
Sbjct: 530 RAVFAFSLRVYPKSEKLWLRAVELEKLYGTTESVCSILEKAVESCPKAEILWLLYAKERK 589
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
I ARN+ RA + +++W +R+E + AR + R + ++ W
Sbjct: 590 NVNDIAGARNILGRAFEYNSNSEEIWLAAVRIEFVNNENERARKLLARARIESGTERIWT 649
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEI 210
I E ++ + A Q+ E ++ +P+ Y K M +G+I
Sbjct: 650 KSISLERILDEKDRALQLLENALKIYPH-------YDKLYMMKGQI 688
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 65/165 (39%), Gaps = 2/165 (1%)
Query: 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVW 116
G +W E +E DRA + E AL+ L+ + + I AR+ +
Sbjct: 643 GTERIWTKSISLERILDEKDRALQLLENALKIYPHYDKLYMMKGQIFEDKEQIELARDAY 702
Query: 117 DRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ-AWLSYIKFELRYEQ 175
V P+ LW ++EE +V AR++FDR P + WL IK ELR
Sbjct: 703 LAGTKVCPYSIPLWLLLAKLEE-KQSVIRARVVFDRAKVKNPKNEFLWLELIKMELRAGN 761
Query: 176 VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ R + +Q P+ W + E R RA + +
Sbjct: 762 ISQVRAALAKALQECPSSGLLWTEAIWLEPRAQRKTRATDALRKC 806
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/247 (21%), Positives = 96/247 (38%), Gaps = 40/247 (16%)
Query: 19 LRESQEHFGEQKSVDP----TELYDYRLHKRNDFEDSIRRV-----------PGDTAVWI 63
L ++ + ++DP T L ND D IR+ P + W+
Sbjct: 224 LAQASSNLTSPSTIDPKGYLTSLNSMVPKNANDLGD-IRKARKLLQSVIETNPKHASGWV 282
Query: 64 NYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVL 123
A+ E N+ +A+S+ E R+ +W + + A+ + AV L
Sbjct: 283 AAARLEEVANKLSQAQSLILKGCENCSRSEDVWLEAIRLHPAAE----AKVIIANAVKKL 338
Query: 124 PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA-WLSYIKFELRYEQVELARQV 182
P LW + ++E A + + I + + + P + W + E E+V+ AR +
Sbjct: 339 PKSVTLWLEAEKLENQAQH---KKRIIKKALEFNPTSVSLWKEAVNLE---EEVDNARIL 392
Query: 183 FERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVA 242
R V+ P + W+ A+ E YE A KK+ + + ++++A
Sbjct: 393 LARAVELIPMSIDLWLALARLE-----------TYENA--KKVLNKARQTIRTSHEVWIA 439
Query: 243 FAEFEER 249
A EE+
Sbjct: 440 AARLEEQ 446
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R+ + + P +W+ AK E Q+ RAR +++ A ++ +N LW + + E+
Sbjct: 699 RDAYLAGTKVCPYSIPLWLLLAKLEEKQSVI-RARVVFDRAKVKNPKNEFLWLELIKMEL 757
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137
I+ R +A+ P LW + I +E
Sbjct: 758 RAGNISQVRAALAKALQECPSSGLLWTEAIWLE 790
>sp|Q99PK0|SYF1_RAT Pre-mRNA-splicing factor SYF1 OS=Rattus norvegicus GN=Xab2 PE=2
SV=1
Length = 855
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 40/219 (18%)
Query: 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRN----HTLWCKYAEFEMINKFINHARNV 115
+W+ +AK+ + D AR + E A + + + ++WC+ E E+ ++ + A +
Sbjct: 396 TLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALKL 455
Query: 116 WDRAVAVLP-----HVD-------------QLWYKYIRMEEIAGNVAAARLIFDRWMHW- 156
+A A LP + D ++W +EE G + + ++DR +
Sbjct: 456 LRKATA-LPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLR 514
Query: 157 --TPDQQAWLSYIKFELRYEQVELARQVFERLVQCH--PNVVSSWIKY-AKFEMRRG--E 209
TP Q ++Y F ++ E + + +ER + PNV W Y KF R G +
Sbjct: 515 IATP--QIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRK 572
Query: 210 IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
++RAR+++E+AL DG + A+ L++ +A+ EE
Sbjct: 573 LERARDLFEQAL-------DGCPPKYAKTLYLLYAQLEE 604
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 108/277 (38%), Gaps = 69/277 (24%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEE--DCRNHT---------LW 96
+E +++ +P +W Y K +Q + R + + A E+ +C LW
Sbjct: 57 YERALKLLPCSYKLWYRYLKARRAQV---KHRCVTDPAYEDVNNCHERAFVFMHKMPRLW 113
Query: 97 CKYAEFEMINKFINHARNVWDRAVAVLPHV--DQLWYKYIRMEEIAGNVAAARLIFDRWM 154
Y +F M + H R +DRA+ LP ++W Y+R A + R++
Sbjct: 114 LDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFL 173
Query: 155 HWTPDQ-QAWLSYIKFELRYEQV--ELARQVFER-------------------LVQCHPN 192
+P+ + ++ Y+K R ++ LA V + L+ +P+
Sbjct: 174 KLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPD 233
Query: 193 VVSS---------------------WIKYAKFEMRRGEIDRARNVYERALEKKLADGDGD 231
V S W A + +R G ++AR+VYE A+ + D
Sbjct: 234 KVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRD-- 291
Query: 232 DDEGAEQLFVAFAEFEERY----KESESEALRKEFGD 264
Q+F ++A+FEE E+ SE R+E D
Sbjct: 292 ----FTQVFDSYAQFEESMIAAKMETASELGREEEDD 324
Score = 38.9 bits (89), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE--------MINKFINHA 112
W+ Y +++ + R ++E AL+ ++ LW +Y + + +
Sbjct: 37 CWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDV 95
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ---AWLSYIKF 169
N +RA + + +LW Y + G V R FDR + P Q W Y++F
Sbjct: 96 NNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRF 155
Query: 170 ELRYEQVELARQVFERLVQCHPNVVSSWIKYAK 202
+ E A + + R ++ P +I+Y K
Sbjct: 156 LRSHPLPETAVRGYRRFLKLSPESAEEYIEYLK 188
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME--------------EIAG 141
W +Y EF+ +++RA+ +LP +LWY+Y++ E
Sbjct: 38 WLRYIEFKQ-GAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVN 96
Query: 142 NVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS--WIK 199
N +F MH P + WL Y +F + +V R+ F+R ++ P S W
Sbjct: 97 NCHERAFVF---MHKMP--RLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPL 151
Query: 200 YAKF 203
Y +F
Sbjct: 152 YLRF 155
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 25/213 (11%)
Query: 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHAR 113
RV VW A E S F +++++ L+ + YA F +K+ +
Sbjct: 479 RVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESF 538
Query: 114 NVWDRAVAVL--PHVDQLWYKYIR--MEEIAG-NVAAARLIFDRWMHWTPDQQAWLSYIK 168
++R +++ P+V +W Y+ + G + AR +F++ + P + A Y+
Sbjct: 539 KAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLL 598
Query: 169 FELRYEQVELARQ---VFERLVQCHPNVVSSWIKYAKFEM---RRGEI---DRARNVYER 219
+ E+ LAR V++R + V +Y F + R EI R +Y++
Sbjct: 599 YAQLEEEWGLARHAMAVYDRATR----AVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQK 654
Query: 220 ALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE 252
A+E DE A ++ + FA+ E + E
Sbjct: 655 AIEVL-------SDEHAREMCLRFADMECKLGE 680
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 61 VWINYAKWEGSQNEFDRARSMWE--LALEEDCRNHTLWCKYAEFEMINKFINH------- 111
+ INYA + F+ + +E ++L + +W Y + KFI+
Sbjct: 520 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTY-----LTKFISRYGGRKLE 574
Query: 112 -ARNVWDRAVAVLP--HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT-PDQQ--AWLS 165
AR+++++A+ P + L+ Y ++EE G A ++DR P QQ +
Sbjct: 575 RARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNI 634
Query: 166 YIKFELRYEQVELARQVFERLVQCHPN--VVSSWIKYAKFEMRRGEIDRARNVY 217
YIK V R ++++ ++ + +++A E + GEIDRAR +Y
Sbjct: 635 YIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY 688
>sp|Q9DCD2|SYF1_MOUSE Pre-mRNA-splicing factor SYF1 OS=Mus musculus GN=Xab2 PE=2 SV=1
Length = 855
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 40/219 (18%)
Query: 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRN----HTLWCKYAEFEMINKFINHARNV 115
+W+ +AK+ + D AR + E A + + + ++WC+ E E+ ++ + A +
Sbjct: 396 TLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALKL 455
Query: 116 WDRAVAVLP-----HVD-------------QLWYKYIRMEEIAGNVAAARLIFDRWMHW- 156
+A A LP + D ++W +EE G + + ++DR +
Sbjct: 456 LRKATA-LPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLR 514
Query: 157 --TPDQQAWLSYIKFELRYEQVELARQVFERLVQCH--PNVVSSWIKY-AKFEMRRG--E 209
TP Q ++Y F ++ E + + +ER + PNV W Y KF R G +
Sbjct: 515 IATP--QIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRK 572
Query: 210 IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
++RAR+++E+AL DG + A+ L++ +A+ EE
Sbjct: 573 LERARDLFEQAL-------DGCPPKYAKTLYLLYAQLEE 604
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 108/277 (38%), Gaps = 69/277 (24%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEE--DCRNHT---------LW 96
+E +++ +P +W Y K +Q + R + + A E+ +C LW
Sbjct: 57 YERALKLLPCSYKLWYRYLKARRAQV---KHRCVTDPAYEDVNNCHERAFVFMHKMPRLW 113
Query: 97 CKYAEFEMINKFINHARNVWDRAVAVLPHV--DQLWYKYIRMEEIAGNVAAARLIFDRWM 154
Y +F M + H R +DRA+ LP ++W Y+R A + R++
Sbjct: 114 LDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFL 173
Query: 155 HWTPDQ-QAWLSYIKFELRYEQV--ELARQVFER-------------------LVQCHPN 192
+P+ + ++ Y+K R ++ LA V + L+ +P+
Sbjct: 174 KLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPD 233
Query: 193 VVSS---------------------WIKYAKFEMRRGEIDRARNVYERALEKKLADGDGD 231
V S W A + +R G ++AR+VYE A+ + D
Sbjct: 234 KVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRD-- 291
Query: 232 DDEGAEQLFVAFAEFEERY----KESESEALRKEFGD 264
Q+F ++A+FEE E+ SE R+E D
Sbjct: 292 ----FTQVFDSYAQFEESMIAAKMETASELGREEEDD 324
Score = 38.9 bits (89), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE--------MINKFINHA 112
W+ Y +++ + R ++E AL+ ++ LW +Y + + +
Sbjct: 37 CWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDV 95
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ---AWLSYIKF 169
N +RA + + +LW Y + G V R FDR + P Q W Y++F
Sbjct: 96 NNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRF 155
Query: 170 ELRYEQVELARQVFERLVQCHPNVVSSWIKYAK 202
+ E A + + R ++ P +I+Y K
Sbjct: 156 LRSHPLPETAVRGYRRFLKLSPESAEEYIEYLK 188
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME--------------EIAG 141
W +Y EF+ +++RA+ +LP +LWY+Y++ E
Sbjct: 38 WLRYIEFKQ-GAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVN 96
Query: 142 NVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS--WIK 199
N +F MH P + WL Y +F + +V R+ F+R ++ P S W
Sbjct: 97 NCHERAFVF---MHKMP--RLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPL 151
Query: 200 YAKF 203
Y +F
Sbjct: 152 YLRF 155
Score = 36.6 bits (83), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 90/213 (42%), Gaps = 25/213 (11%)
Query: 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHAR 113
RV VW A E S F +++++ L+ + YA F +K+ +
Sbjct: 479 RVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESF 538
Query: 114 NVWDRAVAVL--PHVDQLWYKYIR--MEEIAG-NVAAARLIFDRWMHWTPDQQAWLSYIK 168
++R +++ P+V +W Y+ + G + AR +F++ + P + A Y+
Sbjct: 539 KAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLYLL 598
Query: 169 FELRYEQVELARQ---VFERLVQCHPNVVSSWIKYAKFEM---RRGEI---DRARNVYER 219
+ E+ LAR V++R + V +Y F + R EI R +Y++
Sbjct: 599 YAQLEEEWGLARHAMAVYDRATR----AVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQK 654
Query: 220 ALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE 252
A+E DE A ++ + FA+ E + E
Sbjct: 655 AIEVL-------SDEHAREMCLRFADMECKLGE 680
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 22/174 (12%)
Query: 61 VWINYAKWEGSQNEFDRARSMWE--LALEEDCRNHTLWCKYAEFEMINKFINH------- 111
+ INYA + F+ + +E ++L + +W Y + KFI+
Sbjct: 520 IVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTY-----LTKFISRYGGRKLE 574
Query: 112 -ARNVWDRAVAVLP--HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT-PDQQ--AWLS 165
AR+++++A+ P + L+ Y ++EE G A ++DR P QQ +
Sbjct: 575 RARDLFEQALDGCPPKYAKTLYLLYAQLEEEWGLARHAMAVYDRATRAVEPAQQYDMFNI 634
Query: 166 YIKFELRYEQVELARQVFERLVQCHPN--VVSSWIKYAKFEMRRGEIDRARNVY 217
YIK V R ++++ ++ + +++A E + GEIDRAR +Y
Sbjct: 635 YIKRAAEIYGVTHTRGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIY 688
>sp|Q9HCS7|SYF1_HUMAN Pre-mRNA-splicing factor SYF1 OS=Homo sapiens GN=XAB2 PE=1 SV=2
Length = 855
Score = 52.4 bits (124), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 102/219 (46%), Gaps = 40/219 (18%)
Query: 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRN----HTLWCKYAEFEMINKFINHARNV 115
+W+ +AK+ + D AR + E A + + + ++WC+ E E+ ++ + A +
Sbjct: 396 TLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHENYDEALRL 455
Query: 116 WDRAVAVLP-----HVD-------------QLWYKYIRMEEIAGNVAAARLIFDRWMHW- 156
+A A LP + D ++W +EE G + + ++DR +
Sbjct: 456 LRKATA-LPARRAEYFDGSEPVQNRVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLR 514
Query: 157 --TPDQQAWLSYIKFELRYEQVELARQVFERLVQCH--PNVVSSWIKY-AKFEMRRG--E 209
TP Q ++Y F ++ E + + +ER + PNV W Y KF R G +
Sbjct: 515 IATP--QIVINYAMFLEEHKYFEESFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRK 572
Query: 210 IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
++RAR+++E+AL DG + A+ L++ +A+ EE
Sbjct: 573 LERARDLFEQAL-------DGCPPKYAKTLYLLYAQLEE 604
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 108/277 (38%), Gaps = 69/277 (24%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEE--DCRNHT---------LW 96
+E +++ +P +W Y K +Q + R + + A E+ +C LW
Sbjct: 57 YERALKLLPCSYKLWYRYLKARRAQV---KHRCVTDPAYEDVNNCHERAFVFMHKMPRLW 113
Query: 97 CKYAEFEMINKFINHARNVWDRAVAVLPHV--DQLWYKYIRMEEIAGNVAAARLIFDRWM 154
Y +F M + H R +DRA+ LP ++W Y+R A + R++
Sbjct: 114 LDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRFLRSHPLPETAVRGYRRFL 173
Query: 155 HWTPDQ-QAWLSYIKFELRYEQV--ELARQVFER-------------------LVQCHPN 192
+P+ + ++ Y+K R ++ LA V + L+ +P+
Sbjct: 174 KLSPESAEEYIEYLKSSDRLDEAAQRLATVVNDERFVSKAGKSNYQLWHELCDLISQNPD 233
Query: 193 VVSS---------------------WIKYAKFEMRRGEIDRARNVYERALEKKLADGDGD 231
V S W A + +R G ++AR+VYE A+ + D
Sbjct: 234 KVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRD-- 291
Query: 232 DDEGAEQLFVAFAEFEERY----KESESEALRKEFGD 264
Q+F ++A+FEE E+ SE R+E D
Sbjct: 292 ----FTQVFDSYAQFEESMIAAKMETASELGREEEDD 324
Score = 38.9 bits (89), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 12/153 (7%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE--------MINKFINHA 112
W+ Y +++ + R ++E AL+ ++ LW +Y + + +
Sbjct: 37 CWLRYIEFKQGAPK-PRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDV 95
Query: 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ---AWLSYIKF 169
N +RA + + +LW Y + G V R FDR + P Q W Y++F
Sbjct: 96 NNCHERAFVFMHKMPRLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPLYLRF 155
Query: 170 ELRYEQVELARQVFERLVQCHPNVVSSWIKYAK 202
+ E A + + R ++ P +I+Y K
Sbjct: 156 LRSHPLPETAVRGYRRFLKLSPESAEEYIEYLK 188
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 90/213 (42%), Gaps = 25/213 (11%)
Query: 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHAR 113
RV VW A E S F +++++ L+ + YA F +K+ +
Sbjct: 479 RVYKSLKVWSMLADLEESLGTFQSTKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESF 538
Query: 114 NVWDRAVAVL--PHVDQLWYKYIR--MEEIAG-NVAAARLIFDRWMHWTPDQQAWLSYIK 168
++R +++ P+V +W Y+ + G + AR +F++ + P + A Y+
Sbjct: 539 KAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLL 598
Query: 169 FELRYEQVELARQ---VFERLVQCHPNVVSSWIKYAKFEM---RRGEI---DRARNVYER 219
+ E+ LAR V+ER + V +Y F + R EI R +Y++
Sbjct: 599 YAQLEEEWGLARHAMAVYERATR----AVEPAQQYDMFNIYIKRAAEIYGVTHTRGIYQK 654
Query: 220 ALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE 252
A+E DE A ++ + FA+ E + E
Sbjct: 655 AIEVL-------SDEHAREMCLRFADMECKLGE 680
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 22/124 (17%)
Query: 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME--------------EIAG 141
W +Y EF+ +++RA+ +LP +LWY+Y++ E
Sbjct: 38 WLRYIEFKQ-GAPKPRLNQLYERALKLLPCSYKLWYRYLKARRAQVKHRCVTDPAYEDVN 96
Query: 142 NVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS--WIK 199
N +F MH P + WL Y +F + +V R+ F+R ++ P S W
Sbjct: 97 NCHERAFVF---MHKMP--RLWLDYCQFLMDQGRVTHTRRTFDRALRALPITQHSRIWPL 151
Query: 200 YAKF 203
Y +F
Sbjct: 152 YLRF 155
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 44/177 (24%)
Query: 51 SIRRVPGDTAVWINY-----AKWEGSQNEFDRARSMWELALEEDCRNH--TLWCKYAEFE 103
S+ + P + +W Y A++ G + +RAR ++E AL+ + TL+ YA+ E
Sbjct: 546 SLFKWPNVSDIWSTYLTKFIARYGG--RKLERARDLFEQALDGCPPKYAKTLYLLYAQLE 603
Query: 104 MINKFINHARNVWDRAVAVLPHVDQ--LWYKYI-RMEEIAGNVAAARLIFDRWMHWTPDQ 160
HA V++RA + Q ++ YI R EI G V R I+ + + D+
Sbjct: 604 EEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYG-VTHTRGIYQKAIEVLSDE 662
Query: 161 QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVY 217
A R++ C +++A E + GEIDRAR +Y
Sbjct: 663 HA-----------------REM------C--------LRFADMECKLGEIDRARAIY 688
>sp|Q7S1Y0|RNA14_NEUCR mRNA 3'-end-processing protein rna-14 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=rna-14 PE=3 SV=1
Length = 1167
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 91/204 (44%), Gaps = 31/204 (15%)
Query: 30 KSVDPTELYDYRLHKRNDFEDSIRRVP-GDTAVWINYAKWEGSQNEFDRARSMWELALEE 88
+VDPT + + +ED IR P G W+ K + ++N+ D AR ++E L
Sbjct: 233 PAVDPTPVTQPAPDRVAIYEDQIRDDPRGAMNAWLELMKEKRARNDIDGARQVYERFLAI 292
Query: 89 DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYI----RMEEIAGNVA 144
+ +W +Y + E+ A ++ + + P+V+ LW +Y+ R ++ +
Sbjct: 293 FPQAADIWVEYLDLELSLNNFPQAEGIFAKCLMTTPNVN-LWTRYLDYIRRRNDLNDSTG 351
Query: 145 AARLIFDRWMHWTPDQ--------QAWLSYIKFELRY-------------EQVELARQVF 183
AR + + D + W YI+F +++ ++++ R+ +
Sbjct: 352 QARQTVSQAYEFVIDNIGLDKDSGKIWAEYIQF-IKFGPGTVGGSQWQDQQKMDQLRKAY 410
Query: 184 ERLVQCHP--NVVSSWIKYAKFEM 205
+R + C P NV + W +Y +FEM
Sbjct: 411 QRAI-CVPISNVNTLWKEYDQFEM 433
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN-HTLWCKYAE 101
H+ ++ P A ++ +Q DR +++E + +D R W + +
Sbjct: 215 HQSGATTAAVPTTPSSAAPAVDPTPV--TQPAPDRV-AIYEDQIRDDPRGAMNAWLELMK 271
Query: 102 FEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ 161
+ I+ AR V++R +A+ P +W +Y+ +E N A IF + + TP+
Sbjct: 272 EKRARNDIDGARQVYERFLAIFPQAADIWVEYLDLELSLNNFPQAEGIFAKCLMTTPNVN 331
Query: 162 AWLSYIKF 169
W Y+ +
Sbjct: 332 LWTRYLDY 339
>sp|A7MB10|RRP5_BOVIN Protein RRP5 homolog OS=Bos taurus GN=PDCD11 PE=2 SV=1
Length = 1874
Score = 52.0 bits (123), Expect = 1e-05, Method: Composition-based stats.
Identities = 51/236 (21%), Positives = 101/236 (42%), Gaps = 39/236 (16%)
Query: 98 KYAEFEMINKFINHARNVWDRAVAVLPHVDQ-----LWYKYIRMEEIAGNVAAARLIFDR 152
+Y F + I AR V +RA+ + ++ +W + +E + G+ + +F+R
Sbjct: 1627 QYMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFER 1686
Query: 153 WMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDR 212
+ + + +L + E+ + A +++ R+++ + W+KY F +RRG+ +
Sbjct: 1687 AVQYNEPLKVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEA 1746
Query: 213 ARNVYERALE----KKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLI 268
+ V +RALE K+ D + FA+ E ++ ++E R F + I
Sbjct: 1747 SHRVMQRALECLPKKEHVD-----------VIAKFAQLE--FQLGDAERARAIFESTLSI 1793
Query: 269 EDAIVGKGKAPKD----KAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKF 320
PK YI G ++ RA++ER++ HL + KF
Sbjct: 1794 ---------YPKRTDVWSVYIDMIIKHGSQKEARAIFERVI----HLSLAPKRMKF 1836
Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats.
Identities = 41/171 (23%), Positives = 78/171 (45%), Gaps = 21/171 (12%)
Query: 65 YAKWEGSQNEFDRARSMWELALE-----EDCRNHTLWCKYAEFEMINKFINHARNVWDRA 119
Y + E ++AR++ E AL+ E+ +W E + V++RA
Sbjct: 1628 YMAFHLQATEIEKARAVAERALKTISFREEQEKLNVWVALLNLENMYGSQESLTKVFERA 1687
Query: 120 V------AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSYIKFELR 172
V V H+ ++ K + +E AG +++R + + ++ W+ Y F LR
Sbjct: 1688 VQYNEPLKVFLHLADIYTKSEKFQE-AGE------LYNRMLKRFRQEKAVWVKYGAFLLR 1740
Query: 173 YEQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRGEIDRARNVYERAL 221
+ E + +V +R ++C P V K+A+ E + G+ +RAR ++E L
Sbjct: 1741 RGKAEASHRVMQRALECLPKKEHVDVIAKFAQLEFQLGDAERARAIFESTL 1791
Score = 35.8 bits (81), Expect = 0.66, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 199 KYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEAL 258
+Y F ++ EI++AR V ERAL+ +++ ++VA E Y ES L
Sbjct: 1627 QYMAFHLQATEIEKARAVAERALKTI----SFREEQEKLNVWVALLNLENMYGSQES--L 1680
Query: 259 RKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRR---ALYERLVERTKHLK-VW 314
K F V + + K ++H + E+ + LY R+++R + K VW
Sbjct: 1681 TKVFERAVQYNEPL---------KVFLHLADIYTKSEKFQEAGELYNRMLKRFRQEKAVW 1731
Query: 315 ISYAKFEASALSKDGGNPDLSEADLCERKKQSI 347
+ Y F + + + A C KK+ +
Sbjct: 1732 VKYGAFLLRRGKAEASHRVMQRALECLPKKEHV 1764
>sp|Q5RCC2|PRP6_PONAB Pre-mRNA-processing factor 6 OS=Pongo abelii GN=PRPF6 PE=2 SV=1
Length = 941
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 84/174 (48%), Gaps = 2/174 (1%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK 107
+ ++ P +W+ AK + + ARS+ LA + + + +W + E N
Sbjct: 597 LQRAVAHCPKAEVLWLMGAKSKWLTGDVPAARSILALAFQANPNSEEIWLAAVKLESEND 656
Query: 108 FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSY 166
AR + +A + P +++ K +++E + N+ AA+ + + + H+ + W+
Sbjct: 657 EYERARRLLAKARSSAPTA-RVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMK 715
Query: 167 IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ E + E +E AR+ + + ++ P+ W+ ++ E + G++ R R + E++
Sbjct: 716 GQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRTRAILEKS 769
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 74/176 (42%), Gaps = 3/176 (1%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R + +++ P T +W+ ++ E + R R++ E + ++ +N LW + E
Sbjct: 729 REAYNQGLKKCPHSTPLWLLLSRLEEKIGQLTRTRAILEKSRLKNPKNPGLWLESVRLEY 788
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWL 164
N A + +A+ P+ LW + I +E + + H D L
Sbjct: 789 RAGLKNIANTLMAKALQECPNSGILWSEAIFLEARPQRRTKSVDALKKCEH---DPHVLL 845
Query: 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ K ++ AR+ F R V+ ++ +W + KFE++ G +R V +R
Sbjct: 846 AVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEERQEEVRKRC 901
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 1/147 (0%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
V++ K E Q+ A+ + E AL LW + E + + AR +++ +
Sbjct: 677 VFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGL 736
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA-WLSYIKFELRYEQVELA 179
PH LW R+EE G + R I ++ P WL ++ E R +A
Sbjct: 737 KKCPHSTPLWLLLSRLEEKIGQLTRTRAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIA 796
Query: 180 RQVFERLVQCHPNVVSSWIKYAKFEMR 206
+ + +Q PN W + E R
Sbjct: 797 NTLMAKALQECPNSGILWSEAIFLEAR 823
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 80/197 (40%), Gaps = 34/197 (17%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
W+ A + N + AR+++ AL+ ++W + A F + + RAV
Sbjct: 542 TWMEDADSCVAHNALECARAIYAYALQVFPSKKSVWLRAAYFGKNHGTRESLEALLQRAV 601
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELA 179
A P + LW + + + G+V AAR I P+ ++ WL+ +K E ++ E A
Sbjct: 602 AHCPKAEVLWLMGAKSKWLTGDVPAARSILALAFQANPNSEEIWLAAVKLESENDEYERA 661
Query: 180 RQVFERLVQCHP-------NVVSSWIK-------------------YAKFEMRRGEID-- 211
R++ + P +V W++ + K M +G+I+
Sbjct: 662 RRLLAKARSSAPTARVFMKSVKLEWVQDNIRAAQDLCEEALRHYEDFPKLWMMKGQIEEQ 721
Query: 212 -----RARNVYERALEK 223
+AR Y + L+K
Sbjct: 722 KEMMEKAREAYNQGLKK 738
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 36/186 (19%)
Query: 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129
G N+ +AR + + E + + W A E + + ARN+ + + P + +
Sbjct: 286 GDINDIKKARLLLKSVRETNPHHPPAWIASARLEEVTGKLQVARNLIMKGTEMCPKSEDV 345
Query: 130 WYK---------------------------YIRMEEIAGNVAAARLIFDRWMHWTPDQ-Q 161
W + YIR E+ ++ A + + + + P+ +
Sbjct: 346 WLEAARLQPGDTAKAVVAQAVRHLPQFVRIYIRAAELETDIRAKKRVLRKALEHVPNSVR 405
Query: 162 AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
W + ++ E+ E AR + R V+C P V W+ A+ E + AR V +A
Sbjct: 406 LWKAAVEL----EEPEDARIMLSRAVECCPTSVELWLALARLET----YENARKVLNKAR 457
Query: 222 EKKLAD 227
E D
Sbjct: 458 ENIPTD 463
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 71/168 (42%), Gaps = 2/168 (1%)
Query: 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNV 115
P +W+ K E +E++RAR + A ++ K + E + I A+++
Sbjct: 639 PNSEEIWLAAVKLESENDEYERARRLLAKA-RSSAPTARVFMKSVKLEWVQDNIRAAQDL 697
Query: 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA-WLSYIKFELRYE 174
+ A+ +LW ++EE + AR +++ + P WL + E +
Sbjct: 698 CEEALRHYEDFPKLWMMKGQIEEQKEMMEKAREAYNQGLKKCPHSTPLWLLLSRLEEKIG 757
Query: 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222
Q+ R + E+ +P W++ + E R G + A + +AL+
Sbjct: 758 QLTRTRAILEKSRLKNPKNPGLWLESVRLEYRAGLKNIANTLMAKALQ 805
Score = 39.3 bits (90), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 74/185 (40%), Gaps = 16/185 (8%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
RN P VW+ A+ + D A+++ A+ + ++ + AE E
Sbjct: 329 RNLIMKGTEMCPKSEDVWLEAARLQPG----DTAKAVVAQAVRHLPQFVRIYIRAAELET 384
Query: 105 INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAW 163
I + V +A+ +P+ +LW + +EE AR++ R + P + W
Sbjct: 385 ---DIRAKKRVLRKALEHVPNSVRLWKAAVELEEPED----ARIMLSRAVECCPTSVELW 437
Query: 164 LSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223
L+ R E E AR+V + + P WI AK E G + +RA+
Sbjct: 438 LALA----RLETYENARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITS 493
Query: 224 KLADG 228
A+G
Sbjct: 494 LRANG 498
Score = 37.0 bits (84), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 46/227 (20%), Positives = 88/227 (38%), Gaps = 36/227 (15%)
Query: 16 EQILRESQEHFGE-----QKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEG 70
+++LR++ EH + +V+ E D R+ ++ P +W+ A+ E
Sbjct: 390 KRVLRKALEHVPNSVRLWKAAVELEEPEDARIM----LSRAVECCPTSVELWLALARLET 445
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD--- 127
+N AR + A E + +W A+ E N + DRA+ L
Sbjct: 446 YEN----ARKVLNKARENIPTDRHIWITAAKLEEANGNTQMVEKIIDRAITSLRANGVEI 501
Query: 128 --QLWYKYIRMEEIAGNVAAARLIF-----------DRWMHWTPDQQAWLSYIKFELRYE 174
+ W + + AG+VA + + DR W D + +++
Sbjct: 502 NREQWIQDAEECDRAGSVATCQAVMRAVIGIGIEEEDRKHTWMEDADSCVAH-------N 554
Query: 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
+E AR ++ +Q P+ S W++ A F G + + +RA+
Sbjct: 555 ALECARAIYAYALQVFPSKKSVWLRAAYFGKNHGTRESLEALLQRAV 601
>sp|Q6C8L8|RNA14_YARLI mRNA 3'-end-processing protein RNA14 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=RNA14 PE=3 SV=1
Length = 806
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 148 LIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR 207
++ DR D AWL I +R E+++ +R ++ER + +P WI+Y EM
Sbjct: 195 ILEDRIAANPRDMPAWLDLISTIVRKEKLDESRDIYERFLALYPLSAEIWIEYITLEMDN 254
Query: 208 GEIDRARNVYERALEK 223
GE R ++ R L +
Sbjct: 255 GEFKRLEQLFGRCLTR 270
Score = 37.0 bits (84), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 51/104 (49%), Gaps = 7/104 (6%)
Query: 109 INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIK 168
++ +R++++R +A+ P ++W +YI +E G +F R + P+ + W Y+
Sbjct: 223 LDESRDIYERFLALYPLSAEIWIEYITLEMDNGEFKRLEQLFGRCLTRLPNLKLWNIYLT 282
Query: 169 FELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDR 212
+ R V + +++ + N++ ++ +F + IDR
Sbjct: 283 YVRR---VNVLSSESDKITEARTNIIKAF----EFYLDHVGIDR 319
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 74/185 (40%), Gaps = 32/185 (17%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK 107
ED I P D W++ + + D +R ++E L + +W +Y EM N
Sbjct: 196 LEDRIAANPRDMPAWLDLISTIVRKEKLDESRDIYERFLALYPLSAEIWIEYITLEMDNG 255
Query: 108 FINHARNVWDRAVAVLPHVDQLWYKYI--------------RMEEIAGNVAAARLIFDRW 153
++ R + LP++ +LW Y+ ++ E N+ A F+ +
Sbjct: 256 EFKRLEQLFGRCLTRLPNL-KLWNIYLTYVRRVNVLSSESDKITEARTNIIKA---FEFY 311
Query: 154 M-HWTPDQQA---WLSYIKFEL---------RYEQVELARQVFERLVQCHPNVVSS-WIK 199
+ H D+++ W Y+ F ++ +L R+++ + + N +S W
Sbjct: 312 LDHVGIDRESGNVWFEYLDFIKSKPATTTWEEQQKNDLTRKIYRKAIGIPLNNLSILWTA 371
Query: 200 YAKFE 204
Y FE
Sbjct: 372 YTNFE 376
>sp|P0CO08|SYF1_CRYNJ Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SYF1 PE=3 SV=1
Length = 1031
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 106/230 (46%), Gaps = 47/230 (20%)
Query: 61 VWINYAKW--EG----------SQNEFDRARSMWELALEEDCRN----HTLWCKYAEFEM 104
+++N+AK+ EG ++ + ++AR ++E A + + +WC++AE E+
Sbjct: 586 LYVNFAKFYEEGGSKDDNGEPRNEPDLEQARKIFERATKVPFKAVDELAEVWCEWAEMEL 645
Query: 105 INKFINHARNVWDRAVAVLPHVD------------------QLWYKYIRMEEIAGNVAAA 146
N+ A + RA V + +LW Y +EE G V +
Sbjct: 646 RNENYEEAIRLMQRATTVPKNTKINYYDDNIPPQSRLFKSLKLWSYYSDLEESIGTVEST 705
Query: 147 RLIFDRWMHW-TPDQQAWLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSW-IKYAK 202
+ ++D+ M + Q ++Y F + E + +V+ER ++ P W I +K
Sbjct: 706 KAVYDKIMELKIANAQVIVNYATFLEENKYFEESFKVYERGIELFHFPIAFEIWNIYLSK 765
Query: 203 FEMRRG--EIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERY 250
F R G +++RAR+++E+ALE ++ + L++ +A+ EE +
Sbjct: 766 FVKRYGGKKLERARDLFEQALENC-------PEKFCKPLYLMYAKLEEEH 808
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 37/151 (24%)
Query: 75 FDRARSMWELALEEDCRNH---TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD--QL 129
+RAR ++E ALE +C L+ YA+ E + A ++DRA + + D ++
Sbjct: 775 LERARDLFEQALE-NCPEKFCKPLYLMYAKLEEEHGLAKRAMGIYDRAASTVQDSDKFEM 833
Query: 130 WYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQC 189
+ YI + A R I++R + PD+Q E+ R
Sbjct: 834 YTIYIAKATANFGLPATRPIYERALESLPDKQT-------------AEMCR--------- 871
Query: 190 HPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++A+ E + GEIDRAR +Y A
Sbjct: 872 ---------RFARMERKLGEIDRARAIYAHA 893
Score = 32.7 bits (73), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 197 WIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256
W A + ++RGE +RA +ER L + D Q+F A+AEF E + +
Sbjct: 441 WTGLATYWIKRGEFERATATFERGLAAVVTIRD------FTQIFDAYAEFSETMISTLMD 494
Query: 257 ALRKE 261
AL E
Sbjct: 495 ALADE 499
>sp|P0CO09|SYF1_CRYNB Pre-mRNA-splicing factor SYF1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=SYF1 PE=3 SV=1
Length = 1031
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 106/230 (46%), Gaps = 47/230 (20%)
Query: 61 VWINYAKW--EG----------SQNEFDRARSMWELALEEDCRN----HTLWCKYAEFEM 104
+++N+AK+ EG ++ + ++AR ++E A + + +WC++AE E+
Sbjct: 586 LYVNFAKFYEEGGSKDDNGEPRNEPDLEQARKIFERATKVPFKAVDELAEVWCEWAEMEL 645
Query: 105 INKFINHARNVWDRAVAVLPHVD------------------QLWYKYIRMEEIAGNVAAA 146
N+ A + RA V + +LW Y +EE G V +
Sbjct: 646 RNENYEEAIRLMQRATTVPKNTKINYYDDNIPPQSRLFKSLKLWSYYSDLEESIGTVEST 705
Query: 147 RLIFDRWMHW-TPDQQAWLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSW-IKYAK 202
+ ++D+ M + Q ++Y F + E + +V+ER ++ P W I +K
Sbjct: 706 KAVYDKIMELKIANAQVIVNYATFLEENKYFEESFKVYERGIELFHFPIAFEIWNIYLSK 765
Query: 203 FEMRRG--EIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERY 250
F R G +++RAR+++E+ALE ++ + L++ +A+ EE +
Sbjct: 766 FVKRYGGKKLERARDLFEQALENC-------PEKFCKPLYLMYAKLEEEH 808
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 37/151 (24%)
Query: 75 FDRARSMWELALEEDCRNH---TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD--QL 129
+RAR ++E ALE +C L+ YA+ E + A ++DRA + + D ++
Sbjct: 775 LERARDLFEQALE-NCPEKFCKPLYLMYAKLEEEHGLAKRAMGIYDRAASTVQDSDKFEM 833
Query: 130 WYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQC 189
+ YI + A R I++R + PD+Q E+ R
Sbjct: 834 YTIYIAKATANFGLPATRPIYERALESLPDKQT-------------AEMCR--------- 871
Query: 190 HPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220
++A+ E + GEIDRAR +Y A
Sbjct: 872 ---------RFARMERKLGEIDRARAIYAHA 893
Score = 32.7 bits (73), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 197 WIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256
W A + ++RGE +RA +ER L + D Q+F A+AEF E + +
Sbjct: 441 WTGLATYWIKRGEFERATATFERGLAAVVTIRD------FTQIFDAYAEFSETMISTLMD 494
Query: 257 ALRKE 261
AL E
Sbjct: 495 ALADE 499
>sp|O74970|PRP39_SCHPO Pre-mRNA-processing factor 39 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=prp39 PE=3 SV=1
Length = 612
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 69/336 (20%), Positives = 134/336 (39%), Gaps = 62/336 (18%)
Query: 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLW 130
S+ + RS+++ L + W KYA+FE + ++++R +A +PH LW
Sbjct: 50 SKQAINTLRSVYDRFLGKYPLLFGYWKKYADFEFFVAGAEASEHIYERGIAGIPHSVDLW 109
Query: 131 YKYIRME-EIAGNVAAARLIFDRWMHWTP----DQQAWLSYIKFELRYEQVELARQVFER 185
Y + E G+ R +F + + W Y++FE R E+ + Q+ ER
Sbjct: 110 TNYCAFKMETNGDANEVRELFMQGANMVGLDFLSHPFWDKYLEFEERQERPDNVFQLLER 169
Query: 186 LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGD--------DDEGAE 237
L+ + +YA++ R ++ +++ + + LA D G++
Sbjct: 170 LIHIPLH------QYARYFERFVQVSQSQPIQQLLPPDVLASIRADVTREPAKVVSAGSK 223
Query: 238 QLFVAFAEFE-ERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIH---------- 286
Q+ V E E ER + + + V +E A ++ + Y H
Sbjct: 224 QITVERGELEIEREMRARIYNIHLQIFQKVQLETAKRWTFESEIKRPYFHVKELDEAQLV 283
Query: 287 -------FEKSQGERERRRALYER-LVERTKHLKVWISYAKFEASALSKDGGNPDLSEAD 338
FE+ +G+ +R LYER L+ + + W YA++ ++ PD
Sbjct: 284 NWRKYLDFEEVEGDFQRICHLYERCLITCALYDEFWFRYARWMSA-------QPD----- 331
Query: 339 LCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGV 374
+ I ++ A+C+ +S+S G+
Sbjct: 332 ------------HLNDVSIIYERASCIFASISRPGI 355
Score = 33.9 bits (76), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 51/115 (44%), Gaps = 4/115 (3%)
Query: 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK-FINHARNVWDRAV 120
W Y +E + +F R ++E L W +YA + +N +++RA
Sbjct: 285 WRKYLDFEEVEGDFQRICHLYERCLITCALYDEFWFRYARWMSAQPDHLNDVSIIYERAS 344
Query: 121 AVLPHVDQ--LWYKYIRMEEIAGNVAAARLIFDRWMHWTP-DQQAWLSYIKFELR 172
+ + + + +Y EE GN+A+A+ I+ + P + +A L ++ E R
Sbjct: 345 CIFASISRPGIRVQYALFEESQGNIASAKAIYQSILTQLPGNLEAVLGWVGLERR 399
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 30/128 (23%)
Query: 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMH 155
W KY +FE + ++++R + D+ W++Y R WM
Sbjct: 285 WRKYLDFEEVEGDFQRICHLYERCLITCALYDEFWFRYAR-----------------WMS 327
Query: 156 WTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARN 215
PD +S I YE+ A +F + P + ++YA FE +G I A+
Sbjct: 328 AQPDHLNDVSII-----YER---ASCIFASI--SRPGIR---VQYALFEESQGNIASAKA 374
Query: 216 VYERALEK 223
+Y+ L +
Sbjct: 375 IYQSILTQ 382
>sp|Q4WVF4|SYF1_ASPFU Pre-mRNA-splicing factor syf1 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=syf1 PE=3
SV=1
Length = 839
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 24/170 (14%)
Query: 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK 107
+E + R PG W+ Y +++ + E A ++ R++ LW Y EF
Sbjct: 21 YEQDLFRAPGSIKPWLAYIEYKQQNGTLYEQAFVMERACKQLPRSYKLWKMYLEFR---- 76
Query: 108 FINHARN---------------VWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDR 152
INH R +++RA+ +L + ++W Y+ V R FDR
Sbjct: 77 -INHLRGRNATKYRAEYQKVNALFERALILLNKMPKIWEMYLSFLLQQPLVTQTRRTFDR 135
Query: 153 WMHWTPDQQ---AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK 199
+ P Q W Y F R + A +++ R +Q HP +I+
Sbjct: 136 ALRALPITQHNRIWKLYKAFA-RSASGQTAVKIWARYMQIHPENAEDYIE 184
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 99/216 (45%), Gaps = 37/216 (17%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHT----LWCKYAEFEMINKFINHARNVW 116
+W+NYAK+ S + D AR +++ A++ ++ WC++AE E+ ++ + A ++
Sbjct: 405 LWVNYAKFYESGGDLDTARVIFDKAVKVPFKSVAELADTWCEWAEMELRSENFDKAVDIM 464
Query: 117 DRAV-----AVLPHVDQ-------------LWYKYIRMEEIAGNVAAARLIFDRWMHW-- 156
+A + + + D+ LW Y+ + E + R +++R
Sbjct: 465 AKATQAPKKSTVDYFDETLSPQQRVHKSWKLWSFYVDLVESVATLEETRKVYERIFELRI 524
Query: 157 -TPDQQAWLSYIKFELRYEQVELARQVFERLVQ--CHPNVVSSWIKY-AKFEMRRGEIDR 212
TP Q ++Y ++ E + +V+ER + +P W Y K R+ I+R
Sbjct: 525 ATP--QTVVNYANLLEEHKYFEDSFKVYERGLDLFSYPVAFELWNLYLTKAVDRKIGIER 582
Query: 213 ARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
R+++E+AL DG + A+ L++ + EE
Sbjct: 583 LRDLFEQAL-------DGCPPKFAKPLYLMYGNLEE 611
Score = 35.8 bits (81), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 24/175 (13%)
Query: 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA---------- 112
+NYA F+ + ++E L+ L+ FE+ N ++ A
Sbjct: 531 VNYANLLEEHKYFEDSFKVYERGLD-------LFSYPVAFELWNLYLTKAVDRKIGIERL 583
Query: 113 RNVWDRAVAVLP--HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ---QAWLSYI 167
R+++++A+ P L+ Y +EE G A I++R D+ + + YI
Sbjct: 584 RDLFEQALDGCPPKFAKPLYLMYGNLEEERGLARHAMRIYERATRAVSDEDRFEMFEFYI 643
Query: 168 KFELRYEQVELARQVFERLVQCHPN--VVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ R ++ER + P+ +K+A E R GEIDRAR +Y A
Sbjct: 644 TKSASNFGLTSTRPIYERAIAALPDQEAKEMCLKFADMERRLGEIDRARAIYGHA 698
>sp|Q9FNS4|MBB1_CHLRE PsbB mRNA maturation factor Mbb1, chloroplastic OS=Chlamydomonas
reinhardtii GN=MBB1 PE=2 SV=1
Length = 662
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 82/202 (40%), Gaps = 13/202 (6%)
Query: 28 EQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALE 87
E K DPT + R F ++ P V + +A WE Q ++ E
Sbjct: 315 EAKQGDPTVV-------RYLFRKALGANPRSRYVHLAWALWERRQGNPQHCLALLRRGCE 367
Query: 88 EDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAAR 147
+ + L+ +A E I AR ++++ + P +W Y ME GN+ AR
Sbjct: 368 LNPTDPALYQAWALVEKQAGRIERARELFEQGLRADPSDLYMWQAYGVMEAEQGNMDRAR 427
Query: 148 LIFDRWMHWTPDQQAWLSYI-----KFELRYEQVELARQVFERLVQCHPNVVSSWIKYAK 202
+F + W + Y+ E + V+ AR++F+ V+ P ++W +
Sbjct: 428 QLFQEGV-WADPRSPSTVYVFHAWGALEWQAGNVQTARELFKAAVRVDPKSETTWASWIA 486
Query: 203 FEMRRGEIDRARNVYERALEKK 224
E GEI+R + R E++
Sbjct: 487 MESELGEIERVDELRIRQAERQ 508
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 88 EDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAAR 147
E + LW +A E R ++ +A+ P + + E GN
Sbjct: 300 EGAASVALWQAWAVLEAKQGDPTVVRYLFRKALGANPRSRYVHLAWALWERRQGNPQHCL 359
Query: 148 LIFDRWMHWTP-DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR 206
+ R P D + ++ E + ++E AR++FE+ ++ P+ + W Y E
Sbjct: 360 ALLRRGCELNPTDPALYQAWALVEKQAGRIERARELFEQGLRADPSDLYMWQAYGVMEAE 419
Query: 207 RGEIDRARNVYERAL 221
+G +DRAR +++ +
Sbjct: 420 QGNMDRARQLFQEGV 434
Score = 35.4 bits (80), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 53/259 (20%), Positives = 91/259 (35%), Gaps = 36/259 (13%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
+W + E +RAR +++ A+ D + W K+ E AR++W + +
Sbjct: 198 IWSAWGWLEARTGNVERARKLYDAAVVVDGTHACAWHKWGMLEKGQGNFTRARDLWMQGI 257
Query: 121 AVLPHVDQLWYKYIR-----MEEIAGNVAAARLIFD---RWMHWTPDQQAWLSYIKFELR 172
Q Y+ M G V AR F+ R W ++ E +
Sbjct: 258 QRCRRKPQSQNAYLYNALGCMAAQLGRVGEARSWFEEGTRSAEGAASVALWQAWAVLEAK 317
Query: 173 YEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDD 232
+ R +F + + +P + +A +E R+G + R E D
Sbjct: 318 QGDPTVVRYLFRKALGANPRSRYVHLAWALWERRQGNPQHCLALLRRGCELNPTD----- 372
Query: 233 DEGAEQLFVAFAEFE------ERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIH 286
L+ A+A E ER +E + LR + D + + AY
Sbjct: 373 ----PALYQAWALVEKQAGRIERARELFEQGLRADPSDLYMWQ-------------AYGV 415
Query: 287 FEKSQGERERRRALYERLV 305
E QG +R R L++ V
Sbjct: 416 MEAEQGNMDRARQLFQEGV 434
>sp|Q5B3I8|RNA14_EMENI mRNA 3'-end-processing protein rna14 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=rna14 PE=3 SV=2
Length = 1075
Score = 45.8 bits (107), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 32/187 (17%)
Query: 48 FEDSIRRVP-GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMIN 106
ED IR P GD W+ S+N D AR ++E L+ + +W YA E
Sbjct: 244 LEDRIREDPRGDIPAWLELINEHRSRNRIDSARDVYERFLKVFPLSAEMWVAYATMESEL 303
Query: 107 KFINHARNVWDRAVAVLPHVDQLWYKYI-----RMEEIAGNVAAARLIFDR-----WMHW 156
+ +++R + +P V QLW Y+ R AR + H
Sbjct: 304 NELFRLEQIFNRTLLTIPAV-QLWTVYLDYVRRRNPLSTDTTGQARKVISSAYELALQHI 362
Query: 157 TPDQQA---WLSYIKFELRY-------------EQVELARQVFERLVQCHP--NVVSSWI 198
D+++ W YI+F +R ++++L R+ ++R + C P V + W
Sbjct: 363 GMDKESGSIWADYIQF-IRSGPGNVGGSGWQDQQKMDLLRKAYQRAI-CVPMQAVNTLWK 420
Query: 199 KYAKFEM 205
+Y +FEM
Sbjct: 421 EYDQFEM 427
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 29/63 (46%)
Query: 159 DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYE 218
D AWL I +++ AR V+ER ++ P W+ YA E E+ R ++
Sbjct: 255 DIPAWLELINEHRSRNRIDSARDVYERFLKVFPLSAEMWVAYATMESELNELFRLEQIFN 314
Query: 219 RAL 221
R L
Sbjct: 315 RTL 317
>sp|Q4P7S1|SYF1_USTMA Pre-mRNA-splicing factor SYF1 OS=Ustilago maydis (strain 521 / FGSC
9021) GN=SYF1 PE=3 SV=1
Length = 1081
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 29/179 (16%)
Query: 74 EFDRARSMWELALEEDCRN----HTLWCKYAEFEMINKFINHARNVWDRAVA-------- 121
+ + AR ++E A+ R +WC++AE E+ + + A R+VA
Sbjct: 657 DLESARKIFEKAITIPFRRVDDLAEIWCEWAEMELRHSNYDEAIRTMARSVAPPRNTKGI 716
Query: 122 -----VLPHVD------QLWYKYIRMEEIAGNVAAARLIFDRWMHW-TPDQQAWLSYIKF 169
LP +LW Y+ +EE G+V + + ++++ + Q ++Y F
Sbjct: 717 QYHDDTLPPQTRLFKSLKLWSFYVDLEESLGDVESTKRVYEKMLELKIASAQIIINYAAF 776
Query: 170 ELRYEQVELARQVFERLVQ--CHPNVVSSWIKY-AKFEMRRG--EIDRARNVYERALEK 223
+ E + +VFER V+ +P W Y +KF R G +++RAR+++E+AL+K
Sbjct: 777 LEDNKYFEESFKVFERGVELFSYPVAFEIWNVYLSKFVKRYGGAKLERARDLFEQALDK 835
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 26/179 (14%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN---------- 110
+ INYA + F+ + ++E +E L+ FE+ N +++
Sbjct: 769 IIINYAAFLEDNKYFEESFKVFERGVE-------LFSYPVAFEIWNVYLSKFVKRYGGAK 821
Query: 111 --HARNVWDRAVAVLP--HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW--TPDQ-QAW 163
AR+++++A+ P L Y ++EE G V A I++R T D+ +
Sbjct: 822 LERARDLFEQALDKCPARFCKPLMLMYGQLEEEHGLVKRAMKIYERATRAVSTDDRFDMY 881
Query: 164 LSYIKFELRYEQVELARQVFERLVQCHPN--VVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ YI + R ++ER ++ P+ +++A E + GEIDRAR +Y A
Sbjct: 882 VFYIAKAAATFGLAATRPIYERAIESLPDRQTAEMCLRFAALERKLGEIDRARVIYAHA 940
>sp|Q7SAK5|SYF1_NEUCR Pre-mRNA-splicing factor syf-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=syf-1 PE=3 SV=1
Length = 829
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 16/176 (9%)
Query: 39 DYRLHKRNDF--EDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLW 96
D L DF E I R PG T W+ Y +++ + + E A + R++ LW
Sbjct: 13 DLSLVSEEDFPYEQDIVRNPGSTKPWLAYIEYKLQKGTVQEQAYIMERACVQLPRSYKLW 72
Query: 97 CKYAEFEM-----INKFI-----NHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAA 146
Y F +N I ++++RA+ +L + ++W Y++ V
Sbjct: 73 KMYLRFRTKHVSKLNAAIFASEYQKVNSLFERALILLNKMPRIWEMYLKFLMQQPLVTHT 132
Query: 147 RLIFDRWMHWTPDQQ---AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK 199
R FDR + P Q W Y F E E A +++ R +Q HP +I+
Sbjct: 133 RRTFDRALRALPITQHNRIWALYRPFANSAEG-ETAVKIWRRYMQVHPEDAEDFIE 187
Score = 38.9 bits (89), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 30/190 (15%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHT----LWCKYAEFEMINKFINHARNVW 116
+W NYAK+ + + AR + E A++ ++ +W ++AE E+ N+ + A V
Sbjct: 408 LWTNYAKFYEAGGDLSSARRIMEKAVKVPYKSVAELADMWIEWAEMELRNECFDEAMKVM 467
Query: 117 DRAV-----AVLPHVDQ-------------LWYKYIRMEEIAGNVAAARLIFDRWMHW-- 156
+AV + + + D+ LW Y+ + E ++ R +++R
Sbjct: 468 AKAVQAPKRSTVDYFDETLSPQQRVHKSWKLWSFYVDLVESVSSLDETRKVYERIFELRI 527
Query: 157 -TPDQQAWLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSWIKY-AKFEMRRGEIDR 212
TP Q ++Y ++ E + +++ER + +P W Y K R+ I+R
Sbjct: 528 ATP--QTVVNYANLLEEHKYFEESFKIYERGLDLFSYPVAFELWNLYLTKAVDRKISIER 585
Query: 213 ARNVYERALE 222
R+++E+A+E
Sbjct: 586 LRDLFEQAVE 595
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 24/175 (13%)
Query: 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA---------- 112
+NYA F+ + ++E L+ L+ FE+ N ++ A
Sbjct: 534 VNYANLLEEHKYFEESFKIYERGLD-------LFSYPVAFELWNLYLTKAVDRKISIERL 586
Query: 113 RNVWDRAVAVLP--HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ---AWLSYI 167
R+++++AV P ++ Y +EE G A I++R D+ + YI
Sbjct: 587 RDLFEQAVEDCPPKFAKVIYLMYGNLEEERGLARHAMRIYERATRAVADEDRADMFNFYI 646
Query: 168 KFELRYEQVELARQVFERLVQCHPNVVS--SWIKYAKFEMRRGEIDRARNVYERA 220
+ R ++ER + P+ + +K+A E R GEIDRAR +Y A
Sbjct: 647 TKSASNFGLPSTRPIYERAIAALPDAEARDMCLKFADMEKRLGEIDRARAIYGHA 701
Score = 32.0 bits (71), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 49/126 (38%), Gaps = 23/126 (18%)
Query: 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMH 155
W Y E+++ + + +RA LP +LW Y+R R H
Sbjct: 38 WLAYIEYKLQKGTVQEQAYIMERACVQLPRSYKLWKMYLRF---------------RTKH 82
Query: 156 WTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARN 215
+ L+ F Y++V +FER + + W Y KF M++ + R
Sbjct: 83 VSK-----LNAAIFASEYQKVN---SLFERALILLNKMPRIWEMYLKFLMQQPLVTHTRR 134
Query: 216 VYERAL 221
++RAL
Sbjct: 135 TFDRAL 140
>sp|Q54VF4|Y8236_DICDI TPR-containing protein DDB_G0280363 OS=Dictyostelium discoideum
GN=DDB_G0280363 PE=4 SV=2
Length = 1304
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 93/187 (49%), Gaps = 13/187 (6%)
Query: 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
R F+ ++ VP ++ K E E++RA ++ E L ED + LW ++ +
Sbjct: 892 RKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAINIVEKGLFEDPKYGPLW--FSALRL 949
Query: 105 INK----FINHARNVWDRA-VAVLPHVD-QLWYKYIRMEEIAGNVAAARLIFDRWMHWTP 158
K F+ RN +RA AV V +++++ ++EE + N+ +R + + + P
Sbjct: 950 YEKTSHGFLQSTRNTVERARQAVSREVTWKIYFEAAQIEERSKNLTLSRAAYVKSVELCP 1009
Query: 159 DQ---QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI--KYAKFEMRRGEIDRA 213
+ + WL + EL + + +AR++ R ++ P+ + S + +Y++ E G I+++
Sbjct: 1010 ENLLWKVWLGGSRTELNADNICIARKLVFRALEEVPSKLRSLVLLEYSRLEEYAGNINKS 1069
Query: 214 RNVYERA 220
R + + A
Sbjct: 1070 RRILKMA 1076
Score = 38.9 bits (89), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 26/111 (23%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 112 ARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-DQQAWLSYIKFE 170
AR + + + P++ Q W +Y +MEE G + + I + P ++ + I+ E
Sbjct: 788 ARKFYRKVTSTQPYISQGWLEYAKMEEDYGRLEKCQKILQLGLKHCPFNESLLIKGIRHE 847
Query: 171 LRYEQVELARQVFERLVQCHPNVVSSW---IKYAKFEMRRGEIDRARNVYE 218
+ + +E AR + +L ++ +W ++ E R G ID AR +++
Sbjct: 848 EKMDNLEGARALLSQLRD--QSIYKTWRAVMEGGLLEARAGNIDVARKIFK 896
Score = 37.7 bits (86), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 10/167 (5%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
V++ A QN AR + W +YA+ E + + + +
Sbjct: 771 VYLELADLANRQNNLKLARKFYRKVTSTQPYISQGWLEYAKMEEDYGRLEKCQKILQLGL 830
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDR------WMHWTPDQQAWLSYIKFELRYE 174
P + L K IR EE N+ AR + + + W + L E R
Sbjct: 831 KHCPFNESLLIKGIRHEEKMDNLEGARALLSQLRDQSIYKTWRAVMEGGL----LEARAG 886
Query: 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221
+++AR++F+ L++ P + + K E R E +RA N+ E+ L
Sbjct: 887 NIDVARKIFKYLMKHVPWYGPIYQEAYKLEERCEEYERAINIVEKGL 933
Score = 35.0 bits (79), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 138 EIAGNVAAARL-IFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS 196
EIA A L + +HW + +L R ++LAR+ + ++ P +
Sbjct: 750 EIAMEFAFQSLSVLPEKVHW----RVYLELADLANRQNNLKLARKFYRKVTSTQPYISQG 805
Query: 197 WIKYAKFEMRRGEIDRARNVYERALE 222
W++YAK E G +++ + + + L+
Sbjct: 806 WLEYAKMEEDYGRLEKCQKILQLGLK 831
>sp|Q54Z08|SYF1_DICDI Pre-mRNA-splicing factor SYF1 OS=Dictyostelium discoideum GN=xab2
PE=3 SV=1
Length = 850
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 84/211 (39%), Gaps = 46/211 (21%)
Query: 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112
+R+ +W Y E S F +S++E ++ + +A++ NK+
Sbjct: 491 KRLFKSIKIWTFYVDLEESFGTFHNTKSIYEKMIQLKVVTPQIILNFAKYLEENKYFEDM 550
Query: 113 RNVWDRAVAVL--PHVDQLWYKYIR--MEEIAG-NVAAARLIFDRWMHWTPDQQAWLSYI 167
++ V + PHV +W Y+ ++ AG + R +F++ + P +++ + Y+
Sbjct: 551 FKAYEHGVQLFLFPHVQDIWITYLTKFIQRYAGMKLERTRDLFEQVLSKVPPKESIIFYL 610
Query: 168 KFELRYEQVELAR---------------------------------------QVFERLVQ 188
+ EQ LAR ++F + ++
Sbjct: 611 MYANFEEQYGLARHSMAVYDRAAKSVDKEDRFKMYLLYIHRASEFFGVNQTREIFSKAIE 670
Query: 189 CHPN--VVSSWIKYAKFEMRRGEIDRARNVY 217
P+ V +K+A E + GEIDRAR++Y
Sbjct: 671 QLPDQYVRDMCLKFADMEKKYGEIDRARSIY 701
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 63 INYAKWEGSQNEFDRARSMWELALEEDCRNH----TLWCKYAEFEMINKFINHARN-VWD 117
IN K ++ S+ +L EED + W +Y EF+ + RN +++
Sbjct: 11 INKLKMSTITDDIIIQPSIDDLPYEEDVSKNPYSVNCWLRYLEFKQGSP--QKQRNYIYE 68
Query: 118 RAVAVLPHVDQLWYKYIRMEEIA--------GNVAAARLIFDRWMHWTPDQ-QAWLSYIK 168
RA+ LP ++W++Y+ +A + A +F+R + + + W+ Y +
Sbjct: 69 RAIRELPRSYKIWHQYLLERTLAIRGKCILENSFEAVNTLFERSLVFLDKMPRIWIEYCE 128
Query: 169 FELRYEQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRG 208
F + E++ L R+ F+R + P W +Y KF ++R
Sbjct: 129 FLMIQEKITLTRKTFDRALIALPVTQHYRIWNEYTKFILKRS 170
Score = 39.7 bits (91), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 58/125 (46%), Gaps = 13/125 (10%)
Query: 48 FEDSIRRVPGDTAVWINYA-----KWEGS---QNEFDRARSMWELALEEDCRNHTLWCKY 99
+E +IR +P +W Y G +N F+ +++E +L + +W +Y
Sbjct: 67 YERAIRELPRSYKIWHQYLLERTLAIRGKCILENSFEAVNTLFERSLVFLDKMPRIWIEY 126
Query: 100 AEFEMINKFINHARNVWDRAVAVLPHVDQ--LWYKYIR--MEEIAGNVAAARLIFDRWMH 155
EF MI + I R +DRA+ LP +W +Y + ++ ++ R ++ R++
Sbjct: 127 CEFLMIQEKITLTRKTFDRALIALPVTQHYRIWNEYTKFILKRSIPSLTCIR-VYKRYLK 185
Query: 156 WTPDQ 160
P++
Sbjct: 186 IQPEK 190
>sp|Q52DF3|SYF1_MAGO7 Pre-mRNA-splicing factor SYF1 OS=Magnaporthe oryzae (strain 70-15 /
ATCC MYA-4617 / FGSC 8958) GN=SYF1 PE=3 SV=2
Length = 832
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 16/176 (9%)
Query: 39 DYRLHKRNDF--EDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLW 96
D L +DF E I+R PG T W+ Y ++ + + E A + R++ LW
Sbjct: 16 DLHLVTDDDFVYEQDIQRSPGSTKPWLAYISYKIQHGTVEEQAFVLERACMQLPRSYKLW 75
Query: 97 CKYAEFEM-----INKFINHA-----RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAA 146
Y F +N I A ++++RA+ +L + ++W Y++ V
Sbjct: 76 KMYLTFRTKHIAKLNAAIFAAEYRKVNSLFERALILLNKMPRIWEMYLKFLMKQPLVTLT 135
Query: 147 RLIFDRWMHWTPDQQ---AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK 199
R FDR + P Q W Y F A +++ R +Q HP +I+
Sbjct: 136 RRTFDRALRALPITQHNRIWALYRPFA-NSAAGPTAVKIWRRYMQVHPEDAEDFIE 190
Score = 39.3 bits (90), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 88/225 (39%), Gaps = 57/225 (25%)
Query: 74 EFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV--DQLWY 131
E+ + S++E AL + +W Y +F M + R +DRA+ LP +++W
Sbjct: 97 EYRKVNSLFERALILLNKMPRIWEMYLKFLMKQPLVTLTRRTFDRALRALPITQHNRIWA 156
Query: 132 KYIRMEEIAGNVAAARLIFDRWMHWTPD---------------QQAWLSYI--------- 167
Y A A + I+ R+M P+ +A YI
Sbjct: 157 LYRPFANSAAGPTAVK-IWRRYMQVHPEDAEDFIELLYQVGYYTEAAKKYIDVLNNPRFT 215
Query: 168 ------KFELRYEQVEL----ARQV---------FERLVQCHPNVVSS-----WIKYAKF 203
FEL E VEL A +V ER+++ + W+ A +
Sbjct: 216 SKHGKGHFELWSEMVELLVEHATEVEAGYETGIDVERIIRSGIERFADQRGKLWVGLATY 275
Query: 204 EMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
+RRG +RAR+V+E + + D +F ++AEFEE
Sbjct: 276 WIRRGSFERARDVFEEGITTVMTVRD------FTLVFDSYAEFEE 314
Score = 37.0 bits (84), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 73/175 (41%), Gaps = 24/175 (13%)
Query: 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA---------- 112
+NYA ++ + ++E L+ L+ FE+ N ++ A
Sbjct: 537 VNYANLLEEHKYYEESFKIYERGLD-------LFSYPVAFELWNMYLTKAVDRKISIERL 589
Query: 113 RNVWDRAVAVLP--HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ---AWLSYI 167
R+++++AV P ++ Y +EE G A I++R D+ + YI
Sbjct: 590 RDLFEQAVEGCPPKFAKIIYLMYGNLEEERGLARHAMRIYERATRAVSDEDRADMFNFYI 649
Query: 168 KFELRYEQVELARQVFERLVQCHPN--VVSSWIKYAKFEMRRGEIDRARNVYERA 220
+ RQ++ER + P+ +K+A E R GEIDRAR +Y A
Sbjct: 650 TKSASNFGLPSTRQIYERAIAALPDDEARDMCLKFADMEKRLGEIDRARAIYGHA 704
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 94/216 (43%), Gaps = 37/216 (17%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHT----LWCKYAEFEMINKFINHARNVW 116
+W NYAK+ + AR + E A++ ++ +W ++AE E+ N A +
Sbjct: 411 LWANYAKFYERGGDLRSARIIMEKAVKVPFKSVVELADMWIEWAEMELRNDNFEEAVRIM 470
Query: 117 DRAV-----AVLPHVDQ-------------LWYKYIRMEEIAGNVAAARLIFDRWMHW-- 156
+AV + + + D+ LW Y+ + E G + + +++R
Sbjct: 471 AKAVQAPKRSTVDYFDETLTPQQRVHKSWKLWSFYVDLVESVGTLEDTKKVYERIFELRI 530
Query: 157 -TPDQQAWLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSWIKY-AKFEMRRGEIDR 212
TP Q ++Y ++ E + +++ER + +P W Y K R+ I+R
Sbjct: 531 ATP--QTVVNYANLLEEHKYYEESFKIYERGLDLFSYPVAFELWNMYLTKAVDRKISIER 588
Query: 213 ARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248
R+++E+A+E G + A+ +++ + EE
Sbjct: 589 LRDLFEQAVE-------GCPPKFAKIIYLMYGNLEE 617
Score = 32.3 bits (72), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/148 (21%), Positives = 58/148 (39%), Gaps = 27/148 (18%)
Query: 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA 162
E++N + N V + + H QLW Y + E G++ +AR+I ++ + P +
Sbjct: 387 EVVNTYTNAIAAVQPKKASGPFH--QLWANYAKFYERGGDLRSARIIMEKAVK-VPFKSV 443
Query: 163 ------WLSYIKFELRYEQVELARQVFERLVQCHPNVVSS------------------WI 198
W+ + + ELR + E A ++ + VQ W
Sbjct: 444 VELADMWIEWAEMELRNDNFEEAVRIMAKAVQAPKRSTVDYFDETLTPQQRVHKSWKLWS 503
Query: 199 KYAKFEMRRGEIDRARNVYERALEKKLA 226
Y G ++ + VYER E ++A
Sbjct: 504 FYVDLVESVGTLEDTKKVYERIFELRIA 531
>sp|Q02354|UTP6_YEAST U3 small nucleolar RNA-associated protein 6 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=UTP6 PE=1
SV=2
Length = 440
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 48 FEDSIRRVPGDTAVW---INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM 104
++ + P D W +NY K G+Q + + +++ L+ N +W A++E
Sbjct: 96 YQRGTNKFPQDLKFWAMYLNYMKARGNQTSYKKIHNIYNQLLKLHPTNVDIWISCAKYEY 155
Query: 105 -INKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137
++ RN++ + P V +LWY+Y++ E
Sbjct: 156 EVHANFKSCRNIFQNGLRFNPDVPKLWYEYVKFE 189
Score = 36.6 bits (83), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 68/169 (40%), Gaps = 16/169 (9%)
Query: 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAE 101
+ KR DFE + +I Y +E + N+ RA+ + + + + W
Sbjct: 33 MKKRTDFEHRLNSRGSSINDYIKYINYESNVNKL-RAKRCKRILQVKKTNSLSDWSIQQR 91
Query: 102 FEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLI---FDRWMHWTP 158
I + R P + W Y+ + GN + + I +++ + P
Sbjct: 92 IGFI----------YQRGTNKFPQDLKFWAMYLNYMKARGNQTSYKKIHNIYNQLLKLHP 141
Query: 159 -DQQAWLSYIKFELR-YEQVELARQVFERLVQCHPNVVSSWIKYAKFEM 205
+ W+S K+E + + R +F+ ++ +P+V W +Y KFE+
Sbjct: 142 TNVDIWISCAKYEYEVHANFKSCRNIFQNGLRFNPDVPKLWYEYVKFEL 190
>sp|Q9P7R9|SYF1_SCHPO Pre-mRNA-splicing factor cwf3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf3 PE=1 SV=1
Length = 790
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 87/198 (43%), Gaps = 33/198 (16%)
Query: 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120
VWI++A+ E FD AR + A+ ++H F + + + R
Sbjct: 430 VWIDWAEMELRHQNFDAARKLIGDAVHAPRKSHI------------SFFDESLSPQVR-- 475
Query: 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW---TPDQQAWLSYIKFELRYEQVE 177
L ++W Y+ +EE G + R ++DR TP Q ++Y E
Sbjct: 476 --LHKSSKIWMYYLDLEESVGTIETTRKLYDRVFELKIATP--QVVVNYANLLEENAYFE 531
Query: 178 LARQVFERLVQC--HPNVVSSWIKYAKFEMRR---GEIDRARNVYERALEKKLADGDGDD 232
+ +++ER V +P W Y ++R ++R R+++E+ALE G
Sbjct: 532 DSFKIYERGVALFSYPVAFELWNLYLTKFVKRYQGTHMERTRDLFEQALE-------GCP 584
Query: 233 DEGAEQLFVAFAEFEERY 250
E ++ +++ +A+FEE++
Sbjct: 585 PEFSKSIYLLYADFEEKF 602
Score = 36.2 bits (82), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 72/181 (39%), Gaps = 39/181 (21%)
Query: 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHAR 113
R+ + +W+ Y E S + R +++ E + YA N + +
Sbjct: 475 RLHKSSKIWMYYLDLEESVGTIETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSF 534
Query: 114 NVWDRAVAVL--PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFEL 171
+++R VA+ P +LW Y+ KF
Sbjct: 535 KIYERGVALFSYPVAFELWNLYL--------------------------------TKFVK 562
Query: 172 RYE--QVELARQVFERLVQ-CHPNVVSS-WIKYAKFEMRRGEIDRARNVYERALEK-KLA 226
RY+ +E R +FE+ ++ C P S ++ YA FE + G+ R+ ++ E+A +K K A
Sbjct: 563 RYQGTHMERTRDLFEQALEGCPPEFSKSIYLLYADFEEKFGKAKRSISILEKAADKVKTA 622
Query: 227 D 227
D
Sbjct: 623 D 623
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 25/125 (20%)
Query: 126 VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ------QAWLSYIKFELRYEQVELA 179
+ +L+ ++ R E ++ +R+IF++ H P + Q W+ + + ELR++ + A
Sbjct: 389 LGKLFSEFARFYENFDDLEQSRIIFEKATH-VPYKTVNELAQVWIDWAEMELRHQNFDAA 447
Query: 180 RQVFERLVQC-------------HPNV-----VSSWIKYAKFEMRRGEIDRARNVYERAL 221
R++ V P V W+ Y E G I+ R +Y+R
Sbjct: 448 RKLIGDAVHAPRKSHISFFDESLSPQVRLHKSSKIWMYYLDLEESVGTIETTRKLYDRVF 507
Query: 222 EKKLA 226
E K+A
Sbjct: 508 ELKIA 512
>sp|Q4WXX4|RNA14_ASPFU mRNA 3'-end-processing protein rna14 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=rna14 PE=3 SV=1
Length = 1029
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 30/186 (16%)
Query: 48 FEDSIRRVP-GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMIN 106
ED I+ P GD W+ S+N FD AR ++E L+ W YA+ E
Sbjct: 255 LEDRIQEDPRGDIPAWLELINEHRSRNRFDSARDVFERFLKVFPFAAEQWVAYAKMESEL 314
Query: 107 KFINHARNVWDRAVAVLPHVDQLWYKYI-----RMEEIAGNVAAARLIFDR-----WMHW 156
+ +++R + +P V QLW Y+ R AR I + H
Sbjct: 315 NDLYRLEQIFNRTLLTIPDV-QLWSVYLDYVRRRNPLTTDTTGQARRIISSAYELAFQHI 373
Query: 157 TPDQQA---WLSYIKFELR------------YEQVELARQVFERLVQCHPN--VVSSWIK 199
D+ + W Y++F ++++L R+ +++ + C P V + W +
Sbjct: 374 GVDKDSGSIWSDYVQFIKSGPGNVGGSGWQDQQKMDLLRKAYQKAI-CVPTQAVNTLWKE 432
Query: 200 YAKFEM 205
Y +FEM
Sbjct: 433 YDQFEM 438
Score = 40.0 bits (92), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%)
Query: 159 DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYE 218
D AWL I + + AR VFER ++ P W+ YAK E ++ R ++
Sbjct: 266 DIPAWLELINEHRSRNRFDSARDVFERFLKVFPFAAEQWVAYAKMESELNDLYRLEQIFN 325
Query: 219 RAL 221
R L
Sbjct: 326 RTL 328
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,412,741
Number of Sequences: 539616
Number of extensions: 7854422
Number of successful extensions: 23880
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 22357
Number of HSP's gapped (non-prelim): 561
length of query: 476
length of database: 191,569,459
effective HSP length: 121
effective length of query: 355
effective length of database: 126,275,923
effective search space: 44827952665
effective search space used: 44827952665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)