Query 039282
Match_columns 476
No_of_seqs 393 out of 3107
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:08:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039282.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039282hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1915 Cell cycle control pro 100.0 3E-101 6E-106 731.2 42.6 460 1-474 9-676 (677)
2 KOG1915 Cell cycle control pro 100.0 1.7E-35 3.7E-40 282.4 35.2 371 5-385 37-608 (677)
3 KOG0495 HAT repeat protein [RN 100.0 2.2E-27 4.8E-32 234.6 33.1 338 42-422 533-879 (913)
4 KOG0495 HAT repeat protein [RN 99.9 4.8E-25 1E-29 218.2 32.3 292 58-419 515-812 (913)
5 KOG2047 mRNA splicing factor [ 99.9 1E-23 2.2E-28 208.6 35.1 330 28-418 343-718 (835)
6 KOG2047 mRNA splicing factor [ 99.9 6.9E-24 1.5E-28 209.8 33.2 331 42-421 43-504 (835)
7 KOG4626 O-linked N-acetylgluco 99.9 4.4E-24 9.6E-29 210.3 23.7 311 42-412 201-518 (966)
8 KOG4626 O-linked N-acetylgluco 99.9 2.2E-23 4.8E-28 205.4 24.3 315 42-410 133-472 (966)
9 KOG1914 mRNA cleavage and poly 99.9 8.8E-21 1.9E-25 185.0 35.1 339 42-425 36-503 (656)
10 TIGR00990 3a0801s09 mitochondr 99.9 2.5E-20 5.5E-25 199.2 38.7 310 42-419 144-567 (615)
11 TIGR02917 PEP_TPR_lipo putativ 99.9 2E-20 4.3E-25 207.8 39.3 327 42-420 550-897 (899)
12 TIGR02917 PEP_TPR_lipo putativ 99.9 3.6E-20 7.9E-25 205.7 39.4 335 42-418 448-827 (899)
13 PRK15174 Vi polysaccharide exp 99.9 4.8E-20 1E-24 197.2 38.5 264 42-324 59-331 (656)
14 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-20 3.2E-25 201.0 34.0 259 42-384 311-574 (615)
15 PRK11447 cellulose synthase su 99.9 8.9E-20 1.9E-24 207.4 41.0 342 42-421 286-738 (1157)
16 PRK15174 Vi polysaccharide exp 99.9 4.9E-20 1.1E-24 197.1 35.9 279 42-363 93-380 (656)
17 KOG1070 rRNA processing protei 99.9 8.2E-21 1.8E-25 201.4 26.3 253 77-424 1442-1701(1710)
18 PRK11447 cellulose synthase su 99.9 8.8E-19 1.9E-23 199.3 38.8 282 42-364 320-700 (1157)
19 PRK11788 tetratricopeptide rep 99.9 4.6E-18 1E-22 171.9 35.3 263 42-322 52-326 (389)
20 PRK11788 tetratricopeptide rep 99.8 1.7E-17 3.7E-22 167.7 36.4 266 61-385 37-315 (389)
21 PRK10049 pgaA outer membrane p 99.8 8E-17 1.7E-21 175.8 38.3 318 42-417 66-450 (765)
22 KOG0547 Translocase of outer m 99.8 2.2E-17 4.8E-22 159.7 28.8 334 13-410 106-587 (606)
23 PF13429 TPR_15: Tetratricopep 99.8 2.9E-19 6.2E-24 172.5 13.8 264 60-382 9-278 (280)
24 PRK10049 pgaA outer membrane p 99.8 7.2E-16 1.6E-20 168.3 37.2 322 31-419 18-418 (765)
25 KOG1070 rRNA processing protei 99.8 7.8E-17 1.7E-21 171.6 28.2 233 44-327 1443-1687(1710)
26 KOG1258 mRNA processing protei 99.8 7.9E-16 1.7E-20 153.6 32.7 319 42-410 62-491 (577)
27 PLN03218 maturation of RBCL 1; 99.8 5.2E-15 1.1E-19 163.7 41.6 258 58-324 436-732 (1060)
28 KOG2396 HAT (Half-A-TPR) repea 99.8 4.3E-15 9.4E-20 144.6 35.1 333 42-422 88-558 (568)
29 PRK09782 bacteriophage N4 rece 99.8 8E-16 1.7E-20 169.0 33.6 260 43-324 459-724 (987)
30 PRK09782 bacteriophage N4 rece 99.8 1.2E-15 2.6E-20 167.6 33.2 248 42-309 493-742 (987)
31 PRK12370 invasion protein regu 99.8 5.9E-16 1.3E-20 163.1 29.6 247 42-307 278-535 (553)
32 PF13429 TPR_15: Tetratricopep 99.8 2.7E-18 5.8E-23 165.7 10.7 246 42-307 25-277 (280)
33 COG5107 RNA14 Pre-mRNA 3'-end 99.7 1.9E-15 4.2E-20 144.9 28.6 341 42-421 59-529 (660)
34 KOG2076 RNA polymerase III tra 99.7 1.9E-14 4.2E-19 148.7 37.4 319 42-419 156-508 (895)
35 PLN03218 maturation of RBCL 1; 99.7 2.4E-14 5.1E-19 158.5 39.6 205 42-256 387-598 (1060)
36 KOG1155 Anaphase-promoting com 99.7 3.5E-15 7.6E-20 143.8 27.3 246 42-305 244-534 (559)
37 KOG1155 Anaphase-promoting com 99.7 2E-15 4.3E-20 145.5 25.1 217 36-256 274-526 (559)
38 KOG2002 TPR-containing nuclear 99.7 5.1E-15 1.1E-19 153.9 30.0 288 43-363 325-708 (1018)
39 COG3063 PilF Tfp pilus assembl 99.7 2.4E-15 5.2E-20 133.4 23.4 187 60-256 36-226 (250)
40 PLN03081 pentatricopeptide (PP 99.7 8.3E-15 1.8E-19 159.1 31.2 292 58-424 258-558 (697)
41 PRK12370 invasion protein regu 99.7 1.2E-14 2.5E-19 153.2 30.5 222 54-324 251-488 (553)
42 KOG1126 DNA-binding cell divis 99.7 3E-16 6.5E-21 157.6 17.3 201 47-256 409-610 (638)
43 TIGR00540 hemY_coli hemY prote 99.7 7.2E-14 1.6E-18 142.0 34.7 283 42-382 101-400 (409)
44 PLN03081 pentatricopeptide (PP 99.7 3.3E-14 7.2E-19 154.4 32.8 257 42-324 104-404 (697)
45 PRK11189 lipoprotein NlpI; Pro 99.7 2.9E-14 6.2E-19 138.4 29.0 236 42-324 43-282 (296)
46 TIGR02521 type_IV_pilW type IV 99.7 1.7E-14 3.8E-19 133.6 25.8 190 58-256 30-222 (234)
47 KOG1126 DNA-binding cell divis 99.7 2.5E-15 5.4E-20 151.0 20.9 246 42-309 336-622 (638)
48 TIGR02521 type_IV_pilW type IV 99.7 1.8E-14 4E-19 133.5 25.1 182 42-223 48-232 (234)
49 COG3063 PilF Tfp pilus assembl 99.7 1.3E-14 2.9E-19 128.7 21.4 184 42-226 52-238 (250)
50 PLN03077 Protein ECB2; Provisi 99.7 8.3E-14 1.8E-18 154.8 33.3 239 58-324 322-567 (857)
51 PLN03077 Protein ECB2; Provisi 99.6 1.4E-13 2.9E-18 153.1 31.5 289 60-423 425-720 (857)
52 KOG0547 Translocase of outer m 99.6 8.5E-14 1.9E-18 135.1 25.4 238 60-309 327-568 (606)
53 KOG1173 Anaphase-promoting com 99.6 1.8E-13 3.9E-18 135.2 27.8 276 57-385 242-522 (611)
54 KOG2002 TPR-containing nuclear 99.6 4.8E-13 1E-17 139.4 32.1 264 43-323 148-426 (1018)
55 PRK10747 putative protoheme IX 99.6 7.2E-13 1.6E-17 134.1 32.0 275 43-382 102-391 (398)
56 KOG1914 mRNA cleavage and poly 99.6 1.5E-13 3.2E-18 134.9 25.0 327 49-422 10-463 (656)
57 KOG1258 mRNA processing protei 99.6 3.4E-13 7.3E-18 135.0 25.6 305 51-415 37-421 (577)
58 PRK14574 hmsH outer membrane p 99.6 1.1E-11 2.4E-16 134.0 38.1 179 42-220 51-229 (822)
59 KOG1173 Anaphase-promoting com 99.6 5.2E-13 1.1E-17 132.0 25.3 255 42-311 261-522 (611)
60 PRK11189 lipoprotein NlpI; Pro 99.6 4.1E-13 9E-18 130.3 24.6 181 42-226 81-267 (296)
61 TIGR00540 hemY_coli hemY prote 99.6 4E-12 8.6E-17 129.2 32.8 288 65-419 90-395 (409)
62 KOG1125 TPR repeat-containing 99.6 1.6E-13 3.5E-18 136.1 20.5 210 42-252 302-557 (579)
63 PF05843 Suf: Suppressor of fo 99.6 8.7E-14 1.9E-18 133.5 16.0 137 60-196 2-143 (280)
64 KOG1125 TPR repeat-containing 99.6 1E-12 2.3E-17 130.4 23.2 262 63-416 289-564 (579)
65 KOG2076 RNA polymerase III tra 99.6 1.1E-11 2.3E-16 128.8 31.3 295 14-324 157-496 (895)
66 KOG1174 Anaphase-promoting com 99.5 6.5E-12 1.4E-16 119.8 27.0 297 45-408 218-519 (564)
67 COG2956 Predicted N-acetylgluc 99.5 1.8E-11 4E-16 113.6 29.1 243 32-324 41-295 (389)
68 PLN02789 farnesyltranstransfer 99.5 4.9E-12 1.1E-16 122.9 26.7 184 42-226 54-252 (320)
69 PRK14574 hmsH outer membrane p 99.5 4.3E-11 9.3E-16 129.5 35.3 272 42-324 85-463 (822)
70 KOG0624 dsRNA-activated protei 99.5 1.4E-11 3E-16 115.1 26.7 305 42-381 55-387 (504)
71 PRK10747 putative protoheme IX 99.5 4.4E-11 9.5E-16 121.1 33.0 280 68-419 93-386 (398)
72 KOG1129 TPR repeat-containing 99.5 1.8E-13 4E-18 126.7 12.8 184 42-226 273-460 (478)
73 KOG0128 RNA-binding protein SA 99.5 4.1E-11 8.9E-16 123.4 30.4 96 283-424 466-565 (881)
74 KOG1129 TPR repeat-containing 99.5 1.7E-12 3.8E-17 120.3 18.2 231 64-310 228-461 (478)
75 TIGR03302 OM_YfiO outer membra 99.5 1.2E-11 2.6E-16 116.0 21.4 172 54-226 28-234 (235)
76 PF05843 Suf: Suppressor of fo 99.4 1.1E-12 2.5E-17 125.8 13.6 132 94-226 2-138 (280)
77 PLN02789 farnesyltranstransfer 99.4 4.3E-11 9.4E-16 116.4 24.0 168 70-246 48-226 (320)
78 PRK15359 type III secretion sy 99.4 6.7E-12 1.5E-16 108.2 15.6 122 45-169 13-135 (144)
79 KOG1840 Kinesin light chain [C 99.4 7E-11 1.5E-15 120.1 24.6 243 55-307 195-479 (508)
80 KOG1156 N-terminal acetyltrans 99.4 9.7E-10 2.1E-14 110.7 31.9 183 43-226 59-250 (700)
81 PRK10370 formate-dependent nit 99.4 2.2E-11 4.7E-16 110.7 16.6 119 42-160 56-177 (198)
82 cd05804 StaR_like StaR_like; a 99.4 2.8E-09 6.1E-14 106.3 33.0 180 43-223 24-215 (355)
83 PRK15359 type III secretion sy 99.4 2.2E-11 4.8E-16 104.9 14.9 125 79-206 13-138 (144)
84 KOG4162 Predicted calmodulin-b 99.3 2.3E-09 5.1E-14 110.0 28.5 291 32-385 451-787 (799)
85 KOG2003 TPR repeat-containing 99.3 8E-10 1.7E-14 106.7 23.4 222 74-385 471-693 (840)
86 TIGR02552 LcrH_SycD type III s 99.3 1.2E-10 2.7E-15 99.1 15.8 116 46-161 4-119 (135)
87 KOG2396 HAT (Half-A-TPR) repea 99.3 2.3E-08 5E-13 98.3 32.9 143 29-172 22-186 (568)
88 TIGR03302 OM_YfiO outer membra 99.3 1.3E-09 2.7E-14 102.3 23.5 155 87-247 27-213 (235)
89 PRK15179 Vi polysaccharide bio 99.3 3.4E-10 7.4E-15 120.5 21.3 155 43-197 70-225 (694)
90 PRK10370 formate-dependent nit 99.3 1.4E-10 3E-15 105.4 15.9 120 106-226 52-175 (198)
91 KOG1156 N-terminal acetyltrans 99.3 8.2E-09 1.8E-13 104.1 29.3 156 34-190 17-173 (700)
92 PRK15179 Vi polysaccharide bio 99.3 7E-10 1.5E-14 118.1 22.5 153 73-226 63-219 (694)
93 COG5010 TadD Flp pilus assembl 99.3 9.5E-10 2.1E-14 100.1 19.6 179 43-222 51-230 (257)
94 KOG1127 TPR repeat-containing 99.3 5.8E-09 1.3E-13 109.4 27.8 182 42-223 475-659 (1238)
95 COG5107 RNA14 Pre-mRNA 3'-end 99.2 2.5E-09 5.5E-14 103.4 23.3 172 48-253 31-212 (660)
96 KOG1174 Anaphase-promoting com 99.2 5.2E-09 1.1E-13 100.3 25.2 267 42-327 249-521 (564)
97 COG2956 Predicted N-acetylgluc 99.2 1.5E-08 3.3E-13 94.5 27.3 210 63-324 40-262 (389)
98 KOG2376 Signal recognition par 99.2 1.1E-07 2.4E-12 95.2 34.4 387 39-462 27-533 (652)
99 KOG3060 Uncharacterized conser 99.2 9E-09 1.9E-13 93.0 23.1 197 72-315 25-229 (289)
100 KOG2003 TPR repeat-containing 99.2 5E-09 1.1E-13 101.3 22.7 205 43-256 474-679 (840)
101 PRK14720 transcript cleavage f 99.2 5.1E-09 1.1E-13 112.6 25.3 236 53-322 25-268 (906)
102 KOG1840 Kinesin light chain [C 99.2 5.8E-09 1.3E-13 106.2 24.6 252 123-426 195-482 (508)
103 KOG0624 dsRNA-activated protei 99.2 8E-09 1.7E-13 96.9 22.7 237 54-310 33-301 (504)
104 KOG4162 Predicted calmodulin-b 99.2 8.1E-08 1.8E-12 98.9 32.0 172 54-226 318-544 (799)
105 PF12569 NARP1: NMDA receptor- 99.2 1.2E-07 2.6E-12 97.8 33.6 256 35-307 15-334 (517)
106 cd05804 StaR_like StaR_like; a 99.2 2.2E-08 4.7E-13 99.9 27.5 253 42-308 60-337 (355)
107 TIGR02552 LcrH_SycD type III s 99.2 1.8E-09 3.9E-14 91.9 15.6 116 80-195 4-120 (135)
108 KOG0548 Molecular co-chaperone 99.1 6.6E-08 1.4E-12 95.9 28.2 273 42-324 19-405 (539)
109 KOG3060 Uncharacterized conser 99.1 3.4E-08 7.4E-13 89.3 23.2 167 59-226 49-222 (289)
110 COG4783 Putative Zn-dependent 99.1 5.6E-08 1.2E-12 95.7 24.6 194 13-223 248-454 (484)
111 PRK14720 transcript cleavage f 99.0 3.9E-08 8.4E-13 105.9 23.3 257 87-415 25-282 (906)
112 COG4235 Cytochrome c biogenesi 99.0 7.9E-09 1.7E-13 96.5 15.5 127 43-169 140-269 (287)
113 PRK15363 pathogenicity island 99.0 8.5E-09 1.8E-13 87.9 14.3 126 33-159 9-135 (157)
114 COG5010 TadD Flp pilus assembl 99.0 3.4E-08 7.4E-13 90.1 18.7 171 76-256 50-221 (257)
115 PF08424 NRDE-2: NRDE-2, neces 99.0 2.7E-08 5.9E-13 97.4 19.3 168 43-225 3-185 (321)
116 PF12569 NARP1: NMDA receptor- 99.0 2.1E-06 4.6E-11 88.6 33.9 230 59-308 4-292 (517)
117 KOG1128 Uncharacterized conser 99.0 4.4E-08 9.5E-13 100.3 21.0 198 61-324 400-600 (777)
118 KOG1127 TPR repeat-containing 99.0 2.8E-08 6E-13 104.5 19.9 176 72-256 471-649 (1238)
119 KOG0550 Molecular chaperone (D 99.0 5E-08 1.1E-12 93.8 19.1 263 42-318 66-361 (486)
120 COG4783 Putative Zn-dependent 99.0 4.3E-08 9.3E-13 96.5 18.7 143 42-200 323-465 (484)
121 COG3071 HemY Uncharacterized e 98.9 4.3E-06 9.3E-11 80.6 29.7 277 43-384 102-393 (400)
122 KOG1128 Uncharacterized conser 98.9 1.2E-08 2.6E-13 104.4 13.0 191 42-256 415-606 (777)
123 cd00189 TPR Tetratricopeptide 98.9 2.9E-08 6.3E-13 77.2 12.1 99 61-159 2-100 (100)
124 PLN03088 SGT1, suppressor of 98.9 7.5E-08 1.6E-12 95.8 16.1 99 62-160 5-103 (356)
125 KOG0553 TPR repeat-containing 98.9 3.1E-08 6.7E-13 92.0 12.2 99 65-163 87-185 (304)
126 KOG0553 TPR repeat-containing 98.8 3.7E-08 8E-13 91.5 11.8 104 40-144 97-200 (304)
127 PLN03088 SGT1, suppressor of 98.8 1.2E-07 2.6E-12 94.4 14.5 99 42-140 19-117 (356)
128 PF13414 TPR_11: TPR repeat; P 98.7 5.1E-08 1.1E-12 72.4 8.3 67 58-124 2-69 (69)
129 COG3071 HemY Uncharacterized e 98.7 7.4E-06 1.6E-10 79.0 24.8 203 42-256 135-380 (400)
130 PRK02603 photosystem I assembl 98.7 4.5E-07 9.7E-12 80.7 15.8 119 56-193 32-153 (172)
131 TIGR02795 tol_pal_ybgF tol-pal 98.7 2.6E-07 5.6E-12 76.3 13.4 101 60-160 3-109 (119)
132 KOG0550 Molecular chaperone (D 98.7 2.9E-07 6.3E-12 88.7 14.9 168 56-223 166-350 (486)
133 PRK15363 pathogenicity island 98.7 9.8E-07 2.1E-11 75.4 16.1 102 124-226 32-134 (157)
134 COG4235 Cytochrome c biogenesi 98.7 6E-07 1.3E-11 84.1 15.9 112 114-226 143-258 (287)
135 KOG0548 Molecular co-chaperone 98.7 6.6E-06 1.4E-10 82.0 23.8 88 167-263 365-454 (539)
136 PRK10153 DNA-binding transcrip 98.7 1E-06 2.3E-11 91.3 19.3 144 51-194 329-487 (517)
137 PF13432 TPR_16: Tetratricopep 98.7 8.5E-08 1.8E-12 70.3 7.6 64 64-127 2-65 (65)
138 cd00189 TPR Tetratricopeptide 98.7 4.6E-07 1E-11 70.2 12.5 96 96-191 3-99 (100)
139 PF08424 NRDE-2: NRDE-2, neces 98.7 1.5E-06 3.2E-11 85.3 18.1 113 79-191 5-133 (321)
140 PRK11906 transcriptional regul 98.7 1.4E-06 2.9E-11 86.5 17.6 119 42-160 275-405 (458)
141 KOG3617 WD40 and TPR repeat-co 98.6 2.5E-05 5.5E-10 81.2 26.6 116 95-222 860-995 (1416)
142 KOG0128 RNA-binding protein SA 98.6 2.6E-06 5.6E-11 88.7 18.6 209 42-256 295-553 (881)
143 TIGR02795 tol_pal_ybgF tol-pal 98.6 1.5E-06 3.2E-11 71.7 14.0 101 94-194 3-110 (119)
144 PF13414 TPR_11: TPR repeat; P 98.6 2.7E-07 5.8E-12 68.5 8.5 67 92-158 2-69 (69)
145 PF13525 YfiO: Outer membrane 98.6 1.5E-05 3.3E-10 72.8 21.3 169 58-254 4-195 (203)
146 PF09976 TPR_21: Tetratricopep 98.6 2E-06 4.2E-11 74.2 14.5 115 72-186 24-144 (145)
147 PF14559 TPR_19: Tetratricopep 98.6 2.4E-07 5.1E-12 68.6 7.3 66 70-135 2-67 (68)
148 PRK10866 outer membrane biogen 98.6 2.5E-05 5.5E-10 73.3 22.7 163 58-220 31-238 (243)
149 PF13525 YfiO: Outer membrane 98.6 1.8E-05 4E-10 72.3 21.1 157 42-214 22-198 (203)
150 PRK04841 transcriptional regul 98.6 0.00034 7.4E-09 78.8 35.6 192 61-256 411-631 (903)
151 PF12895 Apc3: Anaphase-promot 98.5 3.1E-07 6.8E-12 71.1 7.6 81 72-153 2-84 (84)
152 CHL00033 ycf3 photosystem I as 98.5 3.1E-06 6.7E-11 74.9 14.9 99 43-141 17-120 (168)
153 PRK11906 transcriptional regul 98.5 9.6E-06 2.1E-10 80.6 19.1 172 51-223 240-436 (458)
154 KOG2376 Signal recognition par 98.5 0.0011 2.4E-08 67.2 33.4 105 209-324 356-471 (652)
155 KOG3785 Uncharacterized conser 98.5 0.00043 9.2E-09 66.0 28.7 162 33-197 28-222 (557)
156 PF09976 TPR_21: Tetratricopep 98.5 6.9E-06 1.5E-10 70.8 15.9 116 105-221 23-145 (145)
157 PRK04841 transcriptional regul 98.5 0.0003 6.5E-09 79.3 32.2 268 64-385 457-764 (903)
158 PRK10866 outer membrane biogen 98.5 4.9E-05 1.1E-09 71.4 21.4 160 91-256 30-231 (243)
159 PRK10153 DNA-binding transcrip 98.4 4E-06 8.6E-11 87.1 15.0 119 42-161 359-487 (517)
160 PRK10803 tol-pal system protei 98.4 8E-06 1.7E-10 77.3 14.9 100 60-159 143-249 (263)
161 COG5191 Uncharacterized conser 98.4 3.3E-06 7.1E-11 78.6 11.8 158 11-173 5-189 (435)
162 PF13432 TPR_16: Tetratricopep 98.4 1.4E-06 3E-11 63.8 7.7 63 98-160 2-64 (65)
163 PF13371 TPR_9: Tetratricopept 98.4 2.2E-06 4.7E-11 64.3 8.7 66 66-131 2-67 (73)
164 PF04733 Coatomer_E: Coatomer 98.4 9.5E-06 2.1E-10 78.1 14.9 182 57-252 64-250 (290)
165 CHL00033 ycf3 photosystem I as 98.4 1.5E-05 3.3E-10 70.5 14.9 85 75-159 15-104 (168)
166 COG4700 Uncharacterized protei 98.4 4.7E-05 1E-09 66.1 17.0 134 59-192 89-229 (251)
167 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.1E-05 2.4E-10 80.4 15.1 119 65-186 175-294 (395)
168 PRK15331 chaperone protein Sic 98.4 1.1E-05 2.4E-10 69.3 13.0 106 54-160 32-137 (165)
169 PF12895 Apc3: Anaphase-promot 98.3 2E-06 4.4E-11 66.6 7.7 80 140-220 2-84 (84)
170 PRK02603 photosystem I assembl 98.3 2.6E-05 5.6E-10 69.3 15.9 114 92-226 34-151 (172)
171 PRK10803 tol-pal system protei 98.3 1.4E-05 3E-10 75.7 14.7 102 93-194 142-251 (263)
172 PF14559 TPR_19: Tetratricopep 98.3 2.8E-06 6E-11 62.7 7.4 63 38-101 5-67 (68)
173 COG5191 Uncharacterized conser 98.3 4.6E-07 9.9E-12 84.2 3.6 98 42-139 90-188 (435)
174 KOG0543 FKBP-type peptidyl-pro 98.3 2.3E-05 4.9E-10 76.2 15.3 129 63-191 212-357 (397)
175 COG0457 NrfG FOG: TPR repeat [ 98.3 0.00039 8.5E-09 62.7 23.2 183 43-226 77-267 (291)
176 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 3.5E-05 7.7E-10 76.8 17.0 121 97-220 173-294 (395)
177 COG0457 NrfG FOG: TPR repeat [ 98.3 0.001 2.2E-08 60.0 25.8 184 42-226 40-233 (291)
178 KOG3617 WD40 and TPR repeat-co 98.2 0.00024 5.3E-09 74.2 22.1 231 59-304 858-1171(1416)
179 PF04733 Coatomer_E: Coatomer 98.2 1.2E-05 2.5E-10 77.5 12.1 178 43-226 84-267 (290)
180 COG4700 Uncharacterized protei 98.2 0.00025 5.5E-09 61.7 18.7 147 75-223 72-222 (251)
181 COG4785 NlpI Lipoprotein NlpI, 98.2 0.00024 5.2E-09 63.3 18.8 174 42-223 82-266 (297)
182 KOG4340 Uncharacterized conser 98.2 0.00011 2.3E-09 68.5 16.5 174 42-223 27-207 (459)
183 PF14938 SNAP: Soluble NSF att 98.2 3.2E-05 7E-10 74.5 14.0 161 64-226 40-227 (282)
184 PF14938 SNAP: Soluble NSF att 98.2 0.0004 8.7E-09 66.9 20.9 140 194-422 114-262 (282)
185 KOG3785 Uncharacterized conser 98.1 0.00091 2E-08 63.8 21.1 154 70-226 33-216 (557)
186 PF12688 TPR_5: Tetratrico pep 98.1 9.8E-05 2.1E-09 60.9 13.2 96 60-155 2-103 (120)
187 PF13428 TPR_14: Tetratricopep 98.1 6.8E-06 1.5E-10 55.0 5.2 42 60-101 2-43 (44)
188 PF02184 HAT: HAT (Half-A-TPR) 98.1 4.3E-06 9.4E-11 50.3 3.5 31 292-322 1-31 (32)
189 KOG0543 FKBP-type peptidyl-pro 98.1 9.6E-05 2.1E-09 71.9 14.3 130 96-226 211-357 (397)
190 COG3898 Uncharacterized membra 98.1 0.011 2.4E-07 57.4 27.7 259 63-384 124-395 (531)
191 PF12688 TPR_5: Tetratrico pep 98.1 0.0002 4.3E-09 59.1 14.1 96 128-223 2-104 (120)
192 PF13371 TPR_9: Tetratricopept 98.0 2E-05 4.4E-10 58.9 7.1 61 100-160 2-62 (73)
193 COG4105 ComL DNA uptake lipopr 97.9 0.0034 7.3E-08 58.0 21.0 168 58-226 33-235 (254)
194 COG3898 Uncharacterized membra 97.9 0.012 2.5E-07 57.2 25.2 262 41-325 136-426 (531)
195 PF06552 TOM20_plant: Plant sp 97.9 9.8E-05 2.1E-09 64.2 10.1 87 42-128 8-115 (186)
196 KOG2053 Mitochondrial inherita 97.9 0.06 1.3E-06 57.6 36.7 111 30-142 15-125 (932)
197 COG4105 ComL DNA uptake lipopr 97.9 0.005 1.1E-07 56.9 20.8 159 92-256 33-223 (254)
198 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 0.00011 2.3E-09 73.2 10.0 69 54-122 70-141 (453)
199 KOG2053 Mitochondrial inherita 97.8 0.018 3.9E-07 61.4 26.6 229 71-319 21-265 (932)
200 PF08311 Mad3_BUB1_I: Mad3/BUB 97.8 0.00054 1.2E-08 57.2 12.5 106 43-154 3-126 (126)
201 COG4785 NlpI Lipoprotein NlpI, 97.8 0.0086 1.9E-07 53.7 20.1 197 107-324 79-283 (297)
202 PRK15331 chaperone protein Sic 97.8 0.00035 7.6E-09 60.2 11.2 95 129-223 39-134 (165)
203 PF06552 TOM20_plant: Plant sp 97.8 0.00039 8.4E-09 60.5 11.3 100 75-196 7-116 (186)
204 PF13428 TPR_14: Tetratricopep 97.7 7.3E-05 1.6E-09 49.9 5.2 43 93-135 1-43 (44)
205 PF02184 HAT: HAT (Half-A-TPR) 97.7 3.5E-05 7.7E-10 46.4 3.1 30 175-205 2-31 (32)
206 PF13512 TPR_18: Tetratricopep 97.7 0.0021 4.5E-08 54.2 14.3 119 58-194 9-133 (142)
207 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00032 6.9E-09 69.9 9.9 70 88-157 70-142 (453)
208 KOG4340 Uncharacterized conser 97.6 0.0064 1.4E-07 56.9 17.7 176 69-256 20-197 (459)
209 PF13512 TPR_18: Tetratricopep 97.6 0.0023 4.9E-08 54.0 13.2 103 42-160 27-132 (142)
210 KOG3081 Vesicle coat complex C 97.6 0.049 1.1E-06 50.5 22.7 160 61-226 74-238 (299)
211 COG1729 Uncharacterized protei 97.6 0.0012 2.6E-08 61.5 12.4 87 139-226 153-246 (262)
212 COG1729 Uncharacterized protei 97.6 0.0021 4.5E-08 59.9 13.9 103 96-198 144-253 (262)
213 KOG4555 TPR repeat-containing 97.5 0.0027 5.9E-08 52.1 12.4 93 66-158 50-146 (175)
214 KOG3081 Vesicle coat complex C 97.5 0.02 4.3E-07 53.0 19.5 171 46-223 94-270 (299)
215 KOG4648 Uncharacterized conser 97.4 0.00069 1.5E-08 64.3 8.5 106 62-167 100-206 (536)
216 PF13431 TPR_17: Tetratricopep 97.4 0.00024 5.3E-09 44.4 3.6 32 48-79 2-33 (34)
217 KOG1130 Predicted G-alpha GTPa 97.4 0.11 2.3E-06 51.2 22.8 203 68-307 26-264 (639)
218 KOG0530 Protein farnesyltransf 97.3 0.031 6.7E-07 51.6 18.0 167 42-208 60-236 (318)
219 KOG3616 Selective LIM binding 97.3 0.084 1.8E-06 55.3 23.0 107 194-324 661-778 (1636)
220 PF13431 TPR_17: Tetratricopep 97.3 0.00032 7E-09 43.8 3.7 32 82-113 2-33 (34)
221 PF08311 Mad3_BUB1_I: Mad3/BUB 97.3 0.0038 8.2E-08 52.1 11.2 44 178-221 81-126 (126)
222 KOG4234 TPR repeat-containing 97.3 0.012 2.6E-07 52.1 14.2 99 62-160 98-201 (271)
223 KOG1585 Protein required for f 97.3 0.07 1.5E-06 48.8 19.4 96 101-226 39-141 (308)
224 KOG4642 Chaperone-dependent E3 97.3 0.0025 5.4E-08 57.8 10.0 100 70-169 21-126 (284)
225 PF13424 TPR_12: Tetratricopep 97.3 0.00052 1.1E-08 52.0 5.0 64 59-122 5-75 (78)
226 smart00386 HAT HAT (Half-A-TPR 97.2 0.00058 1.3E-08 41.9 4.2 31 292-322 1-32 (33)
227 smart00386 HAT HAT (Half-A-TPR 97.2 0.00067 1.5E-08 41.6 4.4 31 73-103 1-31 (33)
228 PF04184 ST7: ST7 protein; In 97.2 0.027 5.9E-07 56.6 17.3 152 72-226 181-377 (539)
229 KOG0985 Vesicle coat protein c 97.2 0.54 1.2E-05 51.4 28.7 204 73-324 1089-1326(1666)
230 KOG4234 TPR repeat-containing 97.2 0.0084 1.8E-07 53.0 12.0 96 98-193 100-201 (271)
231 PF03704 BTAD: Bacterial trans 97.2 0.016 3.5E-07 49.6 14.0 88 66-153 13-122 (146)
232 KOG4555 TPR repeat-containing 97.1 0.011 2.4E-07 48.6 11.1 87 103-189 53-144 (175)
233 KOG2796 Uncharacterized conser 97.1 0.028 6.1E-07 51.9 14.9 114 46-159 198-318 (366)
234 smart00777 Mad3_BUB1_I Mad3/BU 97.1 0.01 2.2E-07 49.2 10.9 103 44-152 4-124 (125)
235 KOG1586 Protein required for f 97.1 0.24 5.2E-06 45.2 23.6 122 104-226 84-226 (288)
236 PF04184 ST7: ST7 protein; In 97.0 0.038 8.2E-07 55.6 16.4 154 42-198 185-384 (539)
237 PF07719 TPR_2: Tetratricopept 97.0 0.0021 4.5E-08 39.8 5.1 33 60-92 2-34 (34)
238 KOG1941 Acetylcholine receptor 97.0 0.4 8.7E-06 46.5 23.7 128 96-223 86-235 (518)
239 PF13424 TPR_12: Tetratricopep 97.0 0.0013 2.9E-08 49.7 4.8 63 93-155 5-74 (78)
240 PF00515 TPR_1: Tetratricopept 96.8 0.0025 5.4E-08 39.6 4.4 32 60-91 2-33 (34)
241 KOG2610 Uncharacterized conser 96.8 0.044 9.5E-07 52.4 14.2 152 70-221 114-274 (491)
242 KOG2796 Uncharacterized conser 96.8 0.14 2.9E-06 47.5 16.9 187 5-192 114-318 (366)
243 KOG4642 Chaperone-dependent E3 96.8 0.019 4.2E-07 52.2 11.0 98 42-139 27-129 (284)
244 PF03704 BTAD: Bacterial trans 96.7 0.013 2.8E-07 50.3 9.6 63 60-122 63-125 (146)
245 KOG1308 Hsp70-interacting prot 96.7 0.0017 3.8E-08 61.8 4.2 91 70-160 125-215 (377)
246 PF02259 FAT: FAT domain; Int 96.7 0.23 5E-06 49.1 19.6 119 89-207 142-305 (352)
247 PF13281 DUF4071: Domain of un 96.6 0.76 1.7E-05 45.6 22.3 168 58-226 140-336 (374)
248 PF02259 FAT: FAT domain; Int 96.6 0.5 1.1E-05 46.7 21.4 200 32-250 43-305 (352)
249 KOG1130 Predicted G-alpha GTPa 96.6 0.028 6.2E-07 55.0 11.4 258 43-308 35-345 (639)
250 PF07719 TPR_2: Tetratricopept 96.5 0.0075 1.6E-07 37.2 5.1 32 94-125 2-33 (34)
251 KOG4648 Uncharacterized conser 96.4 0.011 2.5E-07 56.3 7.8 95 42-136 114-208 (536)
252 KOG3616 Selective LIM binding 96.4 0.58 1.3E-05 49.3 20.3 136 64-217 711-847 (1636)
253 KOG2610 Uncharacterized conser 96.4 0.14 3E-06 49.1 14.6 146 43-188 121-275 (491)
254 PF04910 Tcf25: Transcriptiona 96.4 0.17 3.6E-06 50.4 16.2 37 50-86 31-67 (360)
255 PF10300 DUF3808: Protein of u 96.3 0.45 9.7E-06 49.3 19.6 152 71-223 200-376 (468)
256 KOG1586 Protein required for f 96.3 0.61 1.3E-05 42.6 17.6 137 72-223 27-183 (288)
257 PF13181 TPR_8: Tetratricopept 96.2 0.011 2.5E-07 36.4 4.6 32 60-91 2-33 (34)
258 KOG1941 Acetylcholine receptor 96.2 1.3 2.9E-05 43.1 20.0 165 59-223 83-275 (518)
259 KOG3824 Huntingtin interacting 96.2 0.015 3.2E-07 54.8 6.8 69 66-134 123-191 (472)
260 KOG2422 Uncharacterized conser 96.1 0.3 6.4E-06 50.1 16.3 157 35-192 249-451 (665)
261 PF00515 TPR_1: Tetratricopept 96.1 0.018 3.9E-07 35.6 5.0 30 95-124 3-32 (34)
262 PF10300 DUF3808: Protein of u 96.1 0.14 3E-06 53.1 14.2 117 72-188 246-375 (468)
263 COG3118 Thioredoxin domain-con 96.0 0.66 1.4E-05 44.0 16.6 157 60-219 135-297 (304)
264 PF13281 DUF4071: Domain of un 95.8 1.4 3E-05 43.8 18.9 116 93-209 141-274 (374)
265 smart00777 Mad3_BUB1_I Mad3/BU 95.6 0.2 4.3E-06 41.5 10.6 26 194-219 99-124 (125)
266 KOG0376 Serine-threonine phosp 95.6 0.03 6.5E-07 56.0 6.6 92 69-160 14-105 (476)
267 COG3118 Thioredoxin domain-con 95.5 0.67 1.5E-05 43.9 15.0 122 100-223 141-265 (304)
268 KOG0545 Aryl-hydrocarbon recep 95.5 0.24 5.1E-06 45.5 11.5 96 64-159 183-296 (329)
269 PF04910 Tcf25: Transcriptiona 95.3 1.1 2.4E-05 44.7 16.9 138 85-226 32-224 (360)
270 KOG0376 Serine-threonine phosp 95.2 0.037 7.9E-07 55.4 5.7 112 42-158 21-132 (476)
271 KOG0530 Protein farnesyltransf 95.0 0.85 1.8E-05 42.4 13.6 166 74-248 58-232 (318)
272 PF13176 TPR_7: Tetratricopept 95.0 0.062 1.3E-06 33.8 4.5 27 61-87 1-27 (36)
273 PF13174 TPR_6: Tetratricopept 94.9 0.047 1E-06 33.2 3.7 31 61-91 2-32 (33)
274 KOG2041 WD40 repeat protein [G 94.9 6.3 0.00014 41.7 24.1 128 48-186 682-822 (1189)
275 PF13181 TPR_8: Tetratricopept 94.8 0.063 1.4E-06 33.0 4.3 31 94-124 2-32 (34)
276 PF10602 RPN7: 26S proteasome 94.7 1.3 2.8E-05 39.4 14.0 65 60-124 37-104 (177)
277 KOG1585 Protein required for f 94.7 3.5 7.6E-05 38.1 17.8 83 141-223 124-219 (308)
278 PF14561 TPR_20: Tetratricopep 94.6 0.43 9.3E-06 37.1 9.3 47 46-92 9-55 (90)
279 PF10345 Cohesin_load: Cohesin 94.6 8.1 0.00018 41.6 23.8 201 15-218 10-249 (608)
280 PF14561 TPR_20: Tetratricopep 94.5 0.48 1E-05 36.9 9.3 76 78-153 7-84 (90)
281 PF09613 HrpB1_HrpK: Bacterial 94.4 3 6.5E-05 36.1 14.8 84 59-142 10-93 (160)
282 KOG2471 TPR repeat-containing 94.3 0.26 5.7E-06 49.5 9.2 135 71-205 218-380 (696)
283 COG4976 Predicted methyltransf 94.3 0.061 1.3E-06 48.7 4.4 59 102-160 4-62 (287)
284 KOG0551 Hsp90 co-chaperone CNS 94.3 2.5 5.4E-05 40.8 15.1 101 59-159 81-185 (390)
285 KOG3824 Huntingtin interacting 94.0 0.14 3E-06 48.4 6.2 64 97-160 120-183 (472)
286 KOG0545 Aryl-hydrocarbon recep 93.7 1.6 3.5E-05 40.3 12.2 115 93-223 178-293 (329)
287 COG2976 Uncharacterized protei 93.6 2.3 5.1E-05 37.9 12.7 113 46-159 73-191 (207)
288 smart00028 TPR Tetratricopepti 93.6 0.11 2.4E-06 30.4 3.4 31 61-91 3-33 (34)
289 PF13174 TPR_6: Tetratricopept 93.5 0.17 3.6E-06 30.6 4.2 30 96-125 3-32 (33)
290 COG4976 Predicted methyltransf 93.4 0.12 2.7E-06 46.8 4.6 61 66-126 2-62 (287)
291 PF13176 TPR_7: Tetratricopept 93.4 0.2 4.3E-06 31.5 4.4 28 196-223 1-28 (36)
292 PRK10941 hypothetical protein; 93.3 1.3 2.7E-05 42.2 11.6 63 68-130 190-252 (269)
293 KOG0890 Protein kinase of the 92.9 28 0.00061 42.4 27.3 219 58-324 1669-1940(2382)
294 KOG4507 Uncharacterized conser 92.9 1.8 4E-05 44.7 12.4 118 108-226 194-314 (886)
295 COG3629 DnrI DNA-binding trans 92.8 1.2 2.6E-05 42.4 10.5 60 62-121 156-215 (280)
296 KOG2422 Uncharacterized conser 92.6 13 0.00029 38.6 18.1 152 73-226 252-450 (665)
297 KOG0529 Protein geranylgeranyl 92.6 4.9 0.00011 39.9 14.6 168 38-205 42-240 (421)
298 KOG1308 Hsp70-interacting prot 92.6 0.11 2.5E-06 49.8 3.4 116 104-223 125-244 (377)
299 KOG1464 COP9 signalosome, subu 92.2 6.9 0.00015 36.8 14.3 151 73-223 41-220 (440)
300 KOG0551 Hsp90 co-chaperone CNS 92.1 7.8 0.00017 37.5 14.8 92 98-189 86-182 (390)
301 KOG2471 TPR repeat-containing 92.0 1.3 2.9E-05 44.7 10.1 139 102-249 215-381 (696)
302 KOG1538 Uncharacterized conser 92.0 4.5 9.8E-05 42.4 14.1 38 285-324 780-817 (1081)
303 COG2976 Uncharacterized protei 91.6 4.7 0.0001 36.0 12.0 92 132-226 94-190 (207)
304 KOG1464 COP9 signalosome, subu 91.2 13 0.00029 34.9 17.7 182 42-223 44-260 (440)
305 smart00028 TPR Tetratricopepti 91.1 0.39 8.4E-06 27.8 3.7 30 95-124 3-32 (34)
306 PF10602 RPN7: 26S proteasome 90.7 3.1 6.7E-05 36.9 10.4 95 128-223 37-142 (177)
307 KOG0985 Vesicle coat protein c 89.9 38 0.00082 38.0 26.2 132 65-213 1054-1185(1666)
308 PRK10941 hypothetical protein; 89.9 4.5 9.8E-05 38.4 11.3 63 163-226 184-246 (269)
309 PF08631 SPO22: Meiosis protei 89.8 19 0.00042 34.4 26.2 61 163-223 87-150 (278)
310 KOG4507 Uncharacterized conser 89.6 8 0.00017 40.2 13.2 122 38-159 192-315 (886)
311 PF14853 Fis1_TPR_C: Fis1 C-te 89.5 2.7 5.8E-05 29.0 7.0 35 63-97 5-39 (53)
312 COG3629 DnrI DNA-binding trans 88.1 5.7 0.00012 37.8 10.5 61 93-153 153-213 (280)
313 PF11207 DUF2989: Protein of u 87.6 20 0.00044 32.2 13.1 53 92-145 140-196 (203)
314 TIGR02996 rpt_mate_G_obs repea 87.4 1.4 3.1E-05 28.5 4.2 33 46-78 3-35 (42)
315 PF04053 Coatomer_WDAD: Coatom 87.4 38 0.00081 34.9 17.1 27 127-153 347-373 (443)
316 KOG1538 Uncharacterized conser 87.3 22 0.00048 37.6 14.7 44 201-256 780-823 (1081)
317 PF13041 PPR_2: PPR repeat fam 87.1 3.3 7.1E-05 27.9 6.3 30 194-223 3-32 (50)
318 KOG0890 Protein kinase of the 87.1 85 0.0018 38.6 25.5 232 60-325 1630-1903(2382)
319 PF09986 DUF2225: Uncharacteri 86.6 11 0.00023 34.6 11.2 86 72-157 90-195 (214)
320 PF04053 Coatomer_WDAD: Coatom 86.4 27 0.00059 35.9 15.2 74 138-223 329-402 (443)
321 PF13041 PPR_2: PPR repeat fam 86.3 4.1 8.9E-05 27.4 6.5 43 158-201 1-45 (50)
322 PF04781 DUF627: Protein of un 86.1 9.7 0.00021 30.7 9.2 31 66-96 3-33 (111)
323 PF12854 PPR_1: PPR repeat 86.0 1.9 4.2E-05 26.5 4.2 29 190-219 4-32 (34)
324 PF10345 Cohesin_load: Cohesin 85.3 58 0.0013 35.0 20.4 173 39-223 12-208 (608)
325 TIGR02561 HrpB1_HrpK type III 85.2 23 0.0005 30.3 13.4 109 61-187 12-120 (153)
326 PF08631 SPO22: Meiosis protei 84.1 40 0.00087 32.2 27.0 122 70-191 4-152 (278)
327 PF12854 PPR_1: PPR repeat 83.9 2.1 4.5E-05 26.4 3.7 30 157-186 4-33 (34)
328 PF13374 TPR_10: Tetratricopep 83.8 2.9 6.2E-05 26.4 4.6 28 61-88 4-31 (42)
329 PF14853 Fis1_TPR_C: Fis1 C-te 83.3 9.5 0.00021 26.3 7.1 32 100-131 8-39 (53)
330 COG3947 Response regulator con 83.3 5.2 0.00011 38.0 7.5 58 95-152 281-338 (361)
331 COG3947 Response regulator con 83.2 5 0.00011 38.1 7.3 60 61-120 281-340 (361)
332 PF13374 TPR_10: Tetratricopep 83.1 3.3 7.1E-05 26.2 4.7 30 194-223 2-31 (42)
333 KOG0529 Protein geranylgeranyl 83.0 33 0.00072 34.3 13.2 131 42-172 92-241 (421)
334 PF07720 TPR_3: Tetratricopept 83.0 4.6 0.0001 25.3 4.9 33 60-92 2-36 (36)
335 PF09613 HrpB1_HrpK: Bacterial 82.2 33 0.00071 29.8 14.6 65 96-160 13-77 (160)
336 PF04781 DUF627: Protein of un 81.2 27 0.00059 28.2 10.9 103 100-223 3-107 (111)
337 PF14929 TAF1_subA: TAF RNA Po 80.6 82 0.0018 33.3 15.9 130 53-186 286-438 (547)
338 KOG3364 Membrane protein invol 80.3 27 0.00059 29.3 9.8 74 58-131 31-109 (149)
339 PF14929 TAF1_subA: TAF RNA Po 79.2 90 0.002 33.0 19.2 146 73-222 272-440 (547)
340 smart00299 CLH Clathrin heavy 78.9 37 0.0008 28.3 14.6 122 67-206 15-137 (140)
341 COG3914 Spy Predicted O-linked 78.8 29 0.00062 36.4 11.6 116 45-160 51-175 (620)
342 KOG3807 Predicted membrane pro 78.2 70 0.0015 31.2 16.7 130 45-187 204-338 (556)
343 COG2909 MalT ATP-dependent tra 78.2 1.2E+02 0.0025 33.7 24.6 25 283-307 623-647 (894)
344 COG1747 Uncharacterized N-term 78.2 90 0.0019 32.4 23.8 98 126-226 65-162 (711)
345 PF09986 DUF2225: Uncharacteri 77.9 31 0.00067 31.6 10.8 84 106-189 90-194 (214)
346 KOG1310 WD40 repeat protein [G 77.0 12 0.00026 38.5 8.2 88 74-161 389-479 (758)
347 KOG3807 Predicted membrane pro 76.6 78 0.0017 30.9 17.6 108 72-191 197-306 (556)
348 KOG0687 26S proteasome regulat 76.5 31 0.00067 33.4 10.3 100 93-192 104-213 (393)
349 PF07079 DUF1347: Protein of u 76.4 94 0.002 31.7 15.6 87 136-222 15-107 (549)
350 COG2909 MalT ATP-dependent tra 75.4 1.4E+02 0.003 33.1 32.4 194 59-263 347-563 (894)
351 PF09797 NatB_MDM20: N-acetylt 74.7 16 0.00035 36.5 8.7 44 76-119 200-243 (365)
352 TIGR03504 FimV_Cterm FimV C-te 74.0 6.2 0.00013 26.1 3.7 25 63-87 3-27 (44)
353 KOG4814 Uncharacterized conser 73.4 68 0.0015 34.1 12.6 96 127-223 355-457 (872)
354 KOG2066 Vacuolar assembly/sort 73.1 1.5E+02 0.0032 32.4 21.1 29 195-223 506-534 (846)
355 KOG1550 Extracellular protein 73.1 1.3E+02 0.0029 31.9 18.6 174 43-223 230-426 (552)
356 COG2912 Uncharacterized conser 72.8 19 0.0004 34.1 7.9 57 71-127 193-249 (269)
357 PF01535 PPR: PPR repeat; Int 72.2 6 0.00013 23.0 3.2 27 196-222 2-28 (31)
358 PF09797 NatB_MDM20: N-acetylt 72.1 18 0.00039 36.1 8.4 45 109-153 199-243 (365)
359 PF12862 Apc5: Anaphase-promot 72.0 26 0.00057 27.2 7.6 53 171-223 9-70 (94)
360 TIGR02996 rpt_mate_G_obs repea 71.9 11 0.00023 24.6 4.2 32 182-213 4-35 (42)
361 KOG2300 Uncharacterized conser 71.7 1.3E+02 0.0028 31.1 21.3 152 72-223 288-474 (629)
362 PF01535 PPR: PPR repeat; Int 71.4 6.5 0.00014 22.8 3.2 26 163-188 3-28 (31)
363 PF12862 Apc5: Anaphase-promot 71.2 19 0.00041 28.0 6.6 54 70-123 9-71 (94)
364 PF07721 TPR_4: Tetratricopept 71.1 5.7 0.00012 22.6 2.7 22 62-83 4-25 (26)
365 KOG2041 WD40 repeat protein [G 70.0 1.7E+02 0.0036 31.7 14.7 120 92-220 808-936 (1189)
366 PF11846 DUF3366: Domain of un 69.2 20 0.00044 32.0 7.3 50 175-226 126-175 (193)
367 PF07721 TPR_4: Tetratricopept 68.7 8.2 0.00018 22.0 3.0 23 196-218 3-25 (26)
368 KOG1310 WD40 repeat protein [G 68.4 21 0.00046 36.8 7.7 84 42-125 391-477 (758)
369 KOG0276 Vesicle coat complex C 68.4 1.7E+02 0.0036 31.1 14.1 156 36-219 589-746 (794)
370 KOG1839 Uncharacterized protei 67.3 1E+02 0.0022 35.6 13.3 145 111-256 956-1118(1236)
371 KOG1972 Uncharacterized conser 67.2 38 0.00082 36.8 9.5 152 87-248 716-881 (913)
372 COG1747 Uncharacterized N-term 66.1 1.7E+02 0.0037 30.4 23.1 167 52-223 59-234 (711)
373 TIGR00756 PPR pentatricopeptid 65.9 13 0.00028 21.9 3.9 28 196-223 2-29 (35)
374 PF11846 DUF3366: Domain of un 65.5 19 0.00042 32.2 6.4 50 143-192 127-176 (193)
375 PF15297 CKAP2_C: Cytoskeleton 65.5 37 0.0008 33.3 8.4 46 145-190 121-170 (353)
376 KOG0276 Vesicle coat complex C 64.7 69 0.0015 33.8 10.5 81 128-223 615-695 (794)
377 PF15297 CKAP2_C: Cytoskeleton 64.5 75 0.0016 31.2 10.3 48 176-223 119-169 (353)
378 KOG2114 Vacuolar assembly/sort 64.4 2.3E+02 0.005 31.3 15.3 30 127-156 368-397 (933)
379 PF10516 SHNi-TPR: SHNi-TPR; 63.5 16 0.00035 23.2 3.9 27 61-87 3-29 (38)
380 PRK15180 Vi polysaccharide bio 63.2 49 0.0011 33.9 9.0 122 71-192 301-423 (831)
381 COG2912 Uncharacterized conser 62.9 61 0.0013 30.7 9.2 58 168-226 189-246 (269)
382 PF07720 TPR_3: Tetratricopept 62.6 29 0.00063 21.7 4.9 18 132-149 6-23 (36)
383 KOG2300 Uncharacterized conser 62.5 2E+02 0.0042 29.8 19.8 155 65-223 329-514 (629)
384 KOG3364 Membrane protein invol 61.7 98 0.0021 26.1 10.3 70 127-196 32-107 (149)
385 COG3914 Spy Predicted O-linked 61.4 2.2E+02 0.0048 30.1 16.3 131 73-203 45-185 (620)
386 COG4455 ImpE Protein of avirul 61.3 67 0.0015 29.5 8.7 74 170-249 11-84 (273)
387 TIGR03504 FimV_Cterm FimV C-te 60.7 17 0.00038 23.9 3.8 26 198-223 3-28 (44)
388 TIGR00756 PPR pentatricopeptid 60.0 19 0.00042 21.1 3.9 26 96-121 3-28 (35)
389 PF10373 EST1_DNA_bind: Est1 D 58.4 39 0.00085 31.9 7.5 43 78-120 1-43 (278)
390 PF13812 PPR_3: Pentatricopept 56.5 27 0.00059 20.6 4.1 28 196-223 3-30 (34)
391 PF11817 Foie-gras_1: Foie gra 55.8 1.5E+02 0.0033 27.6 10.9 56 94-149 179-240 (247)
392 PF10516 SHNi-TPR: SHNi-TPR; 55.5 29 0.00064 22.0 4.0 28 95-122 3-30 (38)
393 KOG0687 26S proteasome regulat 54.0 2.2E+02 0.0048 27.8 13.5 99 126-226 103-212 (393)
394 PRK15180 Vi polysaccharide bio 53.9 67 0.0015 32.9 8.2 122 104-226 300-422 (831)
395 COG4455 ImpE Protein of avirul 52.7 1E+02 0.0022 28.4 8.4 55 71-125 13-67 (273)
396 PF10373 EST1_DNA_bind: Est1 D 52.4 55 0.0012 30.8 7.5 62 44-105 1-62 (278)
397 KOG1166 Mitotic checkpoint ser 51.4 3.9E+02 0.0085 30.5 14.4 118 58-176 33-165 (974)
398 COG5536 BET4 Protein prenyltra 50.8 1.1E+02 0.0023 29.3 8.5 50 82-131 97-148 (328)
399 KOG1972 Uncharacterized conser 50.3 1E+02 0.0022 33.7 9.2 153 52-206 715-882 (913)
400 PF13812 PPR_3: Pentatricopept 50.3 42 0.00091 19.7 4.2 26 96-121 4-29 (34)
401 KOG1839 Uncharacterized protei 50.3 2E+02 0.0043 33.4 11.9 157 65-221 938-1126(1236)
402 KOG0686 COP9 signalosome, subu 50.0 1.2E+02 0.0027 30.4 9.2 91 60-150 151-252 (466)
403 KOG3783 Uncharacterized conser 49.8 3.3E+02 0.0071 28.5 20.7 65 285-385 456-524 (546)
404 PF10579 Rapsyn_N: Rapsyn N-te 47.6 86 0.0019 23.7 6.0 51 172-222 18-68 (80)
405 PF13226 DUF4034: Domain of un 46.4 2.7E+02 0.0059 26.6 16.7 164 43-218 61-255 (277)
406 KOG1920 IkappaB kinase complex 45.7 5.4E+02 0.012 29.9 19.1 70 175-256 888-958 (1265)
407 PF10579 Rapsyn_N: Rapsyn N-te 45.5 1.3E+02 0.0028 22.7 7.2 32 71-102 18-49 (80)
408 KOG4279 Serine/threonine prote 44.7 1.3E+02 0.0028 32.8 8.8 136 29-170 174-330 (1226)
409 KOG2581 26S proteasome regulat 44.1 3.6E+02 0.0077 27.3 13.0 122 102-226 135-278 (493)
410 KOG1920 IkappaB kinase complex 42.9 5.9E+02 0.013 29.5 15.2 9 445-453 1234-1242(1265)
411 TIGR02561 HrpB1_HrpK type III 42.9 2.2E+02 0.0047 24.5 13.4 102 103-222 20-121 (153)
412 cd02680 MIT_calpain7_2 MIT: do 42.2 43 0.00093 25.0 3.8 20 206-226 18-37 (75)
413 PF12968 DUF3856: Domain of Un 41.6 2E+02 0.0044 23.8 10.4 54 170-223 65-129 (144)
414 smart00299 CLH Clathrin heavy 41.4 2E+02 0.0044 23.7 12.7 51 100-151 14-64 (140)
415 PF07079 DUF1347: Protein of u 40.8 4.3E+02 0.0093 27.3 23.5 124 66-189 13-157 (549)
416 PF15015 NYD-SP12_N: Spermatog 40.1 4.2E+02 0.0092 27.0 12.3 103 103-205 186-310 (569)
417 KOG1811 Predicted Zn2+-binding 39.7 4.4E+02 0.0096 28.1 11.6 67 126-192 586-656 (1141)
418 PF09005 DUF1897: Domain of un 39.4 27 0.00058 22.2 1.9 28 395-422 10-37 (38)
419 PF09670 Cas_Cas02710: CRISPR- 38.3 4.3E+02 0.0092 26.6 16.2 56 67-122 139-198 (379)
420 COG5536 BET4 Protein prenyltra 35.1 4.1E+02 0.009 25.5 10.2 91 110-200 91-190 (328)
421 PF04090 RNA_pol_I_TF: RNA pol 34.6 3.5E+02 0.0076 24.5 11.6 140 59-206 41-190 (199)
422 PF13226 DUF4034: Domain of un 33.9 4.3E+02 0.0093 25.3 11.8 223 66-324 7-242 (277)
423 PF08640 U3_assoc_6: U3 small 33.6 1.5E+02 0.0033 22.5 5.7 43 29-72 14-56 (83)
424 COG5187 RPN7 26S proteasome re 33.5 4.5E+02 0.0098 25.4 16.9 99 93-192 115-224 (412)
425 PHA02537 M terminase endonucle 33.4 49 0.0011 30.6 3.5 29 62-90 86-114 (230)
426 PF14689 SPOB_a: Sensor_kinase 33.4 93 0.002 22.1 4.3 43 45-87 9-51 (62)
427 PRK15490 Vi polysaccharide bio 33.4 2.1E+02 0.0046 30.4 8.5 80 70-151 19-98 (578)
428 KOG1166 Mitotic checkpoint ser 33.2 7.9E+02 0.017 28.2 15.9 116 93-209 34-164 (974)
429 KOG1550 Extracellular protein 32.6 6.3E+02 0.014 26.8 17.9 97 58-158 287-395 (552)
430 PF12583 TPPII_N: Tripeptidyl 32.4 1.1E+02 0.0023 25.6 4.9 34 72-105 89-122 (139)
431 COG0790 FOG: TPR repeat, SEL1 32.1 4.4E+02 0.0096 24.8 20.7 173 43-223 59-266 (292)
432 PF02064 MAS20: MAS20 protein 31.3 1.1E+02 0.0024 25.2 4.8 31 64-94 68-98 (121)
433 PF09670 Cas_Cas02710: CRISPR- 31.2 5.5E+02 0.012 25.7 13.9 121 102-223 140-270 (379)
434 PF04212 MIT: MIT (microtubule 31.1 77 0.0017 22.8 3.7 21 203-223 14-34 (69)
435 cd02684 MIT_2 MIT: domain cont 30.4 89 0.0019 23.2 3.9 19 205-223 17-35 (75)
436 PRK15490 Vi polysaccharide bio 29.7 2.7E+02 0.0059 29.6 8.6 72 44-117 27-98 (578)
437 COG0790 FOG: TPR repeat, SEL1 29.0 5E+02 0.011 24.5 22.0 147 71-223 53-220 (292)
438 PF14863 Alkyl_sulf_dimr: Alky 27.5 2.7E+02 0.0058 23.6 6.8 44 60-103 71-114 (141)
439 PF12968 DUF3856: Domain of Un 26.6 3.7E+02 0.0081 22.3 9.7 94 61-154 9-127 (144)
440 KOG1811 Predicted Zn2+-binding 26.5 8.2E+02 0.018 26.2 11.1 63 161-223 588-653 (1141)
441 COG5159 RPN6 26S proteasome re 26.5 5.9E+02 0.013 24.6 12.3 158 63-220 7-191 (421)
442 KOG2582 COP9 signalosome, subu 26.4 6.6E+02 0.014 25.1 14.0 120 196-324 104-235 (422)
443 PF10255 Paf67: RNA polymerase 26.3 5E+02 0.011 26.3 9.5 60 62-122 125-193 (404)
444 PF15015 NYD-SP12_N: Spermatog 26.2 4.9E+02 0.011 26.6 9.0 91 60-150 173-285 (569)
445 PF09205 DUF1955: Domain of un 26.1 4.1E+02 0.0088 22.5 7.7 113 41-157 18-150 (161)
446 KOG0889 Histone acetyltransfer 25.7 1.3E+03 0.028 30.6 14.1 140 61-201 2814-2966(3550)
447 cd02678 MIT_VPS4 MIT: domain c 25.5 1.3E+02 0.0028 22.2 4.1 20 204-223 16-35 (75)
448 cd00280 TRFH Telomeric Repeat 24.9 5.1E+02 0.011 23.2 8.5 38 166-204 117-154 (200)
449 cd02683 MIT_1 MIT: domain cont 24.5 1.3E+02 0.0028 22.5 3.8 20 204-223 16-35 (77)
450 PF12753 Nro1: Nuclear pore co 23.9 1.1E+02 0.0024 30.7 4.2 19 90-108 347-365 (404)
451 cd02681 MIT_calpain7_1 MIT: do 23.5 1.5E+02 0.0032 22.2 3.9 21 203-223 15-35 (76)
452 KOG2114 Vacuolar assembly/sort 23.1 1.1E+03 0.024 26.4 13.7 48 43-90 345-400 (933)
453 KOG2062 26S proteasome regulat 23.0 1E+03 0.023 26.2 13.7 162 55-223 55-239 (929)
454 PRK15338 type III secretion sy 22.5 7.9E+02 0.017 24.6 10.5 138 78-216 108-256 (372)
455 PF02064 MAS20: MAS20 protein 21.5 2.4E+02 0.0052 23.2 5.2 34 97-130 67-100 (121)
456 PF12583 TPPII_N: Tripeptidyl 20.8 3.8E+02 0.0082 22.5 6.1 26 44-69 95-120 (139)
457 PF11817 Foie-gras_1: Foie gra 20.7 6.4E+02 0.014 23.4 8.7 78 296-416 156-240 (247)
458 PF09205 DUF1955: Domain of un 20.4 5.4E+02 0.012 21.9 14.1 57 167-223 93-149 (161)
459 PF04090 RNA_pol_I_TF: RNA pol 20.2 6.5E+02 0.014 22.7 11.6 66 93-158 41-107 (199)
460 PF12739 TRAPPC-Trs85: ER-Golg 20.1 9.2E+02 0.02 24.4 14.3 156 61-226 210-401 (414)
No 1
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.6e-101 Score=731.19 Aligned_cols=460 Identities=54% Similarity=0.884 Sum_probs=436.3
Q ss_pred CCCCCCCCCcccccHHHHHHHHhhc------cCCCCCCChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 039282 1 MAKKNPRGAPIRKTAEQILRESQEH------FGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNE 74 (476)
Q Consensus 1 ~~~~~~~~~~~qi~a~q~l~~a~~~------~~~~~i~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~ 74 (476)
|+||||+|||+|||||||||||+++ +|+|+|+|++||.+||.++|+.||..|++|+.+++.|++||+|+.++++
T Consensus 9 ~~vknktpa~vqItAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e 88 (677)
T KOG1915|consen 9 AKVKNKTPAPVQITAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKE 88 (677)
T ss_pred hhccCCCCCcceecHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 5799999999999999999999997 7999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 039282 75 FDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM 154 (476)
Q Consensus 75 ~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral 154 (476)
+.+||++|+|||.++..++++|++|+++++++++++|||++++||+++.|+.+++|++|+.|++.+||+.+||++|+||+
T Consensus 89 ~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 89 IQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChh
Q 039282 155 HWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDE 234 (476)
Q Consensus 155 ~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~ 234 (476)
.|.|+.++|++|++|+.+++++++||++|++.+..||+ +..|+.|+.|+.++|....|+.+|++|++. +. ++.
T Consensus 169 ~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~-~~-----~d~ 241 (677)
T KOG1915|consen 169 EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGNVALARSVYERAIEF-LG-----DDE 241 (677)
T ss_pred cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-hh-----hHH
Confidence 99999999999999999999999999999999999999 999999999999999999999999999999 88 788
Q ss_pred hHHHHHHHHHHHHHHccchhHH------------------------HHHHHhCChHHHHHHHHhc---------------
Q 039282 235 GAEQLFVAFAEFEERYKESESE------------------------ALRKEFGDWVLIEDAIVGK--------------- 275 (476)
Q Consensus 235 ~~~~l~~~~a~~e~~~~~~e~A------------------------~~ek~~g~~~~~~~~i~~~--------------- 275 (476)
....++.+||.|+++++++++| .|||+||+..+|+++|.++
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 8899999999999999999999 7999999999999999887
Q ss_pred --------------------------------------------------------------------------------
Q 039282 276 -------------------------------------------------------------------------------- 275 (476)
Q Consensus 276 -------------------------------------------------------------------------------- 275 (476)
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkF 401 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKF 401 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccc
Confidence
Q ss_pred ------------------------------cCCCCch---hhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHH
Q 039282 276 ------------------------------GKAPKDK---AYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFE 321 (476)
Q Consensus 276 ------------------------------~~~p~~~---~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e 321 (476)
|+||+++ .||+++.+++++++.|++|++.|+..| +...|..|+.+|
T Consensus 402 tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 402 TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELE 481 (677)
T ss_pred hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHH
Confidence 9999987 899999999999999999999999999 899999999999
Q ss_pred hhcCCCCCC--------C-CCCch-h------HHHHhhHhhHHhhhhhhhHHhHHHHh------hhhc------------
Q 039282 322 ASALSKDGG--------N-PDLSE-A------DLCERKKQSIRGARRSHRKIYHQFAT------CLIS------------ 367 (476)
Q Consensus 322 ~~~~~~~~~--------~-~~~~~-~------~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~------------ 367 (476)
.+.|+.++. + +.+.. + +.|++..|.+++| |.||+++|+ +|+|
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~eka----R~LYerlL~rt~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKA----RALYERLLDRTQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHH----HHHHHHHHHhcccchHHHhHHHHhccccccc
Confidence 999987663 1 22221 1 4599999999999 999999997 4766
Q ss_pred --------------cCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCChhhhhhccccCC
Q 039282 368 --------------SLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLKKRRQIASD 433 (476)
Q Consensus 368 --------------~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~~~~~~~~~~~ 433 (476)
...||.||++|+..++.. +.+++|++||++|++||..+|+..+++.|.++||++|||||++..+
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~--~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~vKKrr~~~~e 635 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKES--TPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKVKKRRKIQRE 635 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHHHhhhhhhcc
Confidence 257999999999999988 6699999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEeeeeecCCCCC-CcchHHHHHHHHHHHHhhccc
Q 039282 434 NGLSAGYEEYIDYLFPEESQ-KTNFKILEAASKWIKKKIVSN 474 (476)
Q Consensus 434 ~~~~~~~~e~~~~~fp~~~~-~~~~~~~~~a~~~~~~~~~~~ 474 (476)
|| ++++|||+|||||||.+ ++|+|||++|++||+++....
T Consensus 636 dG-~~~~EEy~DYiFPed~~~~~~~K~LeaA~kWK~q~~~~~ 676 (677)
T KOG1915|consen 636 DG-DTEYEEYFDYIFPEDASATKNLKILEAAKKWKKQKAKAE 676 (677)
T ss_pred cC-chhHHHHHHhcCccccccCcchHHHHHHHHHHHHHHhcc
Confidence 99 66999999999999976 889999999999999887654
No 2
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.7e-35 Score=282.44 Aligned_cols=371 Identities=30% Similarity=0.471 Sum_probs=292.3
Q ss_pred CCCCCcccccHHHHHHHHhhc----------------cCCCCCCChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039282 5 NPRGAPIRKTAEQILRESQEH----------------FGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKW 68 (476)
Q Consensus 5 ~~~~~~~qi~a~q~l~~a~~~----------------~~~~~i~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~ 68 (476)
...|+.+.||..--|+|=+-+ .-.++++.+|+-+.--++||++||++|..+-.+..+|++||.+
T Consensus 37 ~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~ 116 (677)
T KOG1915|consen 37 APRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEF 116 (677)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 345677779988877776543 1224446666555544599999999999999999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 039282 69 EGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARL 148 (476)
Q Consensus 69 ~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~ 148 (476)
++.+..+..||.++.||+.+-|.--.+|.+|+-++...||+..||.+|+|-+...|. .+.|..|+.++...++++.||.
T Consensus 117 Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~ 195 (677)
T KOG1915|consen 117 EMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARS 195 (677)
T ss_pred HHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999997 8999999999999999999999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----------------------------------------
Q 039282 149 IFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQ---------------------------------------- 188 (476)
Q Consensus 149 ~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~---------------------------------------- 188 (476)
+|+|-+-.+|+...|..|+.|+.++|++..|+.+|++++.
T Consensus 196 IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~p 275 (677)
T KOG1915|consen 196 IYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIP 275 (677)
T ss_pred HHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988888888877764
Q ss_pred -----------------------------------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC
Q 039282 189 -----------------------------------------CHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLAD 227 (476)
Q Consensus 189 -----------------------------------------~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~ 227 (476)
.+|.+.++|..|..+....|+.++.+++|++||.. .|+
T Consensus 276 k~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp 354 (677)
T KOG1915|consen 276 KGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPP 354 (677)
T ss_pred cccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCc
Confidence 34556699999999999999999999999999988 774
Q ss_pred C----------------------C-CC-----------------ChhhHHHHHHHHHHHHHHccchhHH-----------
Q 039282 228 G----------------------D-GD-----------------DDEGAEQLFVAFAEFEERYKESESE----------- 256 (476)
Q Consensus 228 ~----------------------~-~~-----------------~~~~~~~l~~~~a~~e~~~~~~e~A----------- 256 (476)
- . .| ..++...+|+.|+.|+.++.++..|
T Consensus 355 ~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c 434 (677)
T KOG1915|consen 355 ASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC 434 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC
Confidence 2 0 00 1123566788888888888777766
Q ss_pred --------------------------------------------HHHHHhCChHHHHHHHHh-ccCC----C--CchhhH
Q 039282 257 --------------------------------------------ALRKEFGDWVLIEDAIVG-KGKA----P--KDKAYI 285 (476)
Q Consensus 257 --------------------------------------------~~ek~~g~~~~~~~~i~~-~~~~----p--~~~~~~ 285 (476)
.+|..+|+.+-...+... .... | .++.||
T Consensus 435 PK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYI 514 (677)
T KOG1915|consen 435 PKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYI 514 (677)
T ss_pred CchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhh
Confidence 123333332221111110 0000 1 123999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhh
Q 039282 286 HFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCL 365 (476)
Q Consensus 286 ~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 365 (476)
+|+...|++++||.+|+++|.+++|++||+++|.|+.+.....+.. +..+.+++..++..| |++|+++...+
T Consensus 515 dFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~----~~~~~e~~~~~~~~A----R~iferAn~~~ 586 (677)
T KOG1915|consen 515 DFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDE----DLAELEITDENIKRA----RKIFERANTYL 586 (677)
T ss_pred hhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccccccccc----chhhhhcchhHHHHH----HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999875433211 122346667888889 99999999877
Q ss_pred hc--cCchhHHHHHHHHHhhhc
Q 039282 366 IS--SLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 366 ~~--~~~~r~ifera~~~~~~~ 385 (476)
-+ +...|.++-.+...+...
T Consensus 587 k~~~~KeeR~~LLEaw~~~E~~ 608 (677)
T KOG1915|consen 587 KESTPKEERLMLLEAWKNMEET 608 (677)
T ss_pred HhcCcHHHHHHHHHHHHHHHHh
Confidence 65 566777777776655443
No 3
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.97 E-value=2.2e-27 Score=234.63 Aligned_cols=338 Identities=17% Similarity=0.273 Sum_probs=283.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
.-+|.+|-.+|..+|..-.+|.+.+.++...|..+.-..+|++|+...|....+|+.|+......|++..|+.++.+|+.
T Consensus 533 ~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~ 612 (913)
T KOG0495|consen 533 ECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFE 612 (913)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYA 201 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a 201 (476)
.+|++..+|+.-..++.....++.||.+|.++-...|...+|..++.++.-+++.++|+.+++++++.+|+...+|+.+|
T Consensus 613 ~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlG 692 (913)
T KOG0495|consen 613 ANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLG 692 (913)
T ss_pred hCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCC
Q 039282 202 KFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAP 279 (476)
Q Consensus 202 ~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p 279 (476)
.++.+.++++.||..|..++.. || .+..+|+..+.++++.|.+-+| ++++. +-..|
T Consensus 693 Qi~e~~~~ie~aR~aY~~G~k~-cP--------~~ipLWllLakleEk~~~~~rAR~ildra-------------rlkNP 750 (913)
T KOG0495|consen 693 QIEEQMENIEMAREAYLQGTKK-CP--------NSIPLWLLLAKLEEKDGQLVRARSILDRA-------------RLKNP 750 (913)
T ss_pred HHHHHHHHHHHHHHHHHhcccc-CC--------CCchHHHHHHHHHHHhcchhhHHHHHHHH-------------HhcCC
Confidence 9999999999999999999999 99 7888999999999999988887 23321 11334
Q ss_pred Cch----hhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhh
Q 039282 280 KDK----AYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSH 354 (476)
Q Consensus 280 ~~~----~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 354 (476)
++. ..+.++.+.|+.+.|..+..++|..+| +..+|..-+.++-..+..... .+-..++.|.+
T Consensus 751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks-------------~DALkkce~dp 817 (913)
T KOG0495|consen 751 KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKS-------------IDALKKCEHDP 817 (913)
T ss_pred CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHH-------------HHHHHhccCCc
Confidence 433 566899999999999999999999999 788999998888766332110 00011111111
Q ss_pred hHHhHHHHhhhhc--cCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCCh
Q 039282 355 RKIYHQFATCLIS--SLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPK 422 (476)
Q Consensus 355 ~~~~~~~~~~~~~--~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 422 (476)
+-+..-+-..|.. .+.+|+.|+||++..++. ...|.-+..||..||+.++.+.|.+++-+
T Consensus 818 hVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~--------GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 818 HVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN--------GDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc--------chHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 1111100011222 344499999999998877 35899999999999999999999998653
No 4
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.95 E-value=4.8e-25 Score=218.21 Aligned_cols=292 Identities=22% Similarity=0.349 Sum_probs=261.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~ 137 (476)
....|+.-++.+...+.++-||.+|..+|.++|....+|...+.++...|..+.-..+|++++..+|....+|..|+...
T Consensus 515 ~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 515 RKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 35678888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039282 138 EIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNV 216 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~ 216 (476)
...|++..||.++.++++.+|++ ++|+.-+.++.+..++++||.+|.++....|+ ..+|.+++.++.-+|+.++|+.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHH
Confidence 99999999999999999999987 99999999999999999999999999999888 99999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCch----hhHHHHHHcC
Q 039282 217 YERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDK----AYIHFEKSQG 292 (476)
Q Consensus 217 ~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~----~~~~~~~~~g 292 (476)
+++|++. +| .+..+|...++++++.+.++.|. +....+...||... .+++++.+.|
T Consensus 674 lEe~lk~-fp--------~f~Kl~lmlGQi~e~~~~ie~aR-----------~aY~~G~k~cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 674 LEEALKS-FP--------DFHKLWLMLGQIEEQMENIEMAR-----------EAYLQGTKKCPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HHHHHHh-CC--------chHHHHHHHhHHHHHHHHHHHHH-----------HHHHhccccCCCCchHHHHHHHHHHHhc
Confidence 9999999 99 88999999999999998888772 12234556788754 7789999999
Q ss_pred CHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCch
Q 039282 293 ERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSS 371 (476)
Q Consensus 293 ~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 371 (476)
+..+||.+++++...+| ++.+|+.-+.+|.+. |+.+.|
T Consensus 734 ~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~--------------------gn~~~a--------------------- 772 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPKNALLWLESIRMELRA--------------------GNKEQA--------------------- 772 (913)
T ss_pred chhhHHHHHHHHHhcCCCcchhHHHHHHHHHHc--------------------CCHHHH---------------------
Confidence 99999999999999999 899999999999999 999999
Q ss_pred hHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhh
Q 039282 372 SGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAM 419 (476)
Q Consensus 372 r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~ 419 (476)
+.+.-+|++.|+.+ ..||-.=+.+|-..+......+..++
T Consensus 773 ~~lmakALQecp~s--------g~LWaEaI~le~~~~rkTks~DALkk 812 (913)
T KOG0495|consen 773 ELLMAKALQECPSS--------GLLWAEAIWLEPRPQRKTKSIDALKK 812 (913)
T ss_pred HHHHHHHHHhCCcc--------chhHHHHHHhccCcccchHHHHHHHh
Confidence 88888888888877 45777777777666553333333333
No 5
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.94 E-value=1e-23 Score=208.62 Aligned_cols=330 Identities=20% Similarity=0.358 Sum_probs=258.3
Q ss_pred CCCCCChHHhhHHH-------HHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC--
Q 039282 28 EQKSVDPTELYDYR-------LHKRNDFEDSIRR-VPGD-----TAVWINYAKWEGSQNEFDRARSMWELALEEDCRN-- 92 (476)
Q Consensus 28 ~~~i~d~eel~e~~-------~~a~~~~e~~l~~-~p~~-----~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~-- 92 (476)
.|++...++-.... .+....|..+++. +|.- ..+|..+|.+|...|+++.||.+|++|+.++...
T Consensus 343 RQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~ 422 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE 422 (835)
T ss_pred hcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence 35666666655422 3455667777763 5533 3689999999999999999999999999887665
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------------------CcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 039282 93 --HTLWCKYAEFEMINKFINHARNVWDRAVAVLP------------------HVDQLWYKYIRMEEIAGNVAAARLIFDR 152 (476)
Q Consensus 93 --~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p------------------~~~~lw~~~~~~~~~~g~~~~A~~~~er 152 (476)
..+|+.++++++++.+++.|..+.++|+...- ++..+|..|+.+++..|-++..+.+|++
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 48999999999999999999999999986532 2468999999999999999999999999
Q ss_pred HHhcCC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHH-HHHcC--CHHHHHHHHHHHHHhhcC
Q 039282 153 WMHWTP-DQQAWLSYIKFELRYEQVELARQVFERLVQCHP--NVVSSWIKYAKF-EMRRG--EIDRARNVYERALEKKLA 226 (476)
Q Consensus 153 al~~~P-~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p--~~~~~w~~~a~~-~~~~g--~~~~A~~~~e~al~~~~p 226 (476)
.+.+.- .+.+-.+|+.|+..+.-++.+..+|++.+.++| ...++|..|..- -.+.| +.++||.+|++|++. ||
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~-Cp 581 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDG-CP 581 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc-CC
Confidence 998764 457899999999999999999999999999875 556889888554 44444 689999999999998 98
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHH
Q 039282 227 DGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERL 304 (476)
Q Consensus 227 ~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~ 304 (476)
+.....+|+.|+.+|+..|-..+| .|+++-...+.....-+- ..||.=-...=.+...|.+|+++
T Consensus 582 ------p~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~my-------ni~I~kaae~yGv~~TR~iYeka 648 (835)
T KOG2047|consen 582 ------PEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMY-------NIYIKKAAEIYGVPRTREIYEKA 648 (835)
T ss_pred ------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHH-------HHHHHHHHHHhCCcccHHHHHHH
Confidence 346678999999999999887766 455532221111000000 01221111222356789999999
Q ss_pred HhccCC---HHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHH
Q 039282 305 VERTKH---LKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINY 381 (476)
Q Consensus 305 l~~~~~---~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~ 381 (476)
++.-|+ ...-+.++.+|.+. |.+++| |+||--+-+.
T Consensus 649 Ie~Lp~~~~r~mclrFAdlEtkl--------------------GEidRA---------------------RaIya~~sq~ 687 (835)
T KOG2047|consen 649 IESLPDSKAREMCLRFADLETKL--------------------GEIDRA---------------------RAIYAHGSQI 687 (835)
T ss_pred HHhCChHHHHHHHHHHHHHhhhh--------------------hhHHHH---------------------HHHHHhhhhc
Confidence 999884 35778999999999 999999 9999999988
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHh
Q 039282 382 YKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQA 418 (476)
Q Consensus 382 ~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~ 418 (476)
+.+.. . ..+|..|..||.+||+.++++.+.+
T Consensus 688 ~dPr~--~----~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 688 CDPRV--T----TEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred CCCcC--C----hHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 87652 2 5799999999999999999988764
No 6
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.94 E-value=6.9e-24 Score=209.80 Aligned_cols=331 Identities=20% Similarity=0.432 Sum_probs=255.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQ--------NEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHAR 113 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~--------~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~ 113 (476)
.+..-+||++++..|.+..+|..|.+.-..+ ..++.--.+|+|++-.-...+.+|+.|.++.+.++++.+.|
T Consensus 43 k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR 122 (835)
T KOG2047|consen 43 KQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTR 122 (835)
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHH
Confidence 4566789999999999999999999544331 34567778899999888888899999999999999999999
Q ss_pred HHHHHHHHhCCC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---
Q 039282 114 NVWDRAVAVLPH--VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQ--- 188 (476)
Q Consensus 114 ~~~~ral~~~p~--~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~--- 188 (476)
..|++||...|. +..+|-.|+.+....+-.+-+..+|+|-|+..|.. -..|+.++...+.+++|.+.|...+.
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~--~eeyie~L~~~d~~~eaa~~la~vln~d~ 200 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEA--REEYIEYLAKSDRLDEAAQRLATVLNQDE 200 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHH--HHHHHHHHHhccchHHHHHHHHHhcCchh
Confidence 999999999996 78899999999999999999999999999999875 56777777777777777666555442
Q ss_pred ---------------------hCCC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 189 ---------------------CHPN---------------------VVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 189 ---------------------~~p~---------------------~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.+|+ -+.+|..+|++|.+.|.+++|+.+|++++.. ..
T Consensus 201 f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~-v~ 279 (835)
T KOG2047|consen 201 FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT-VM 279 (835)
T ss_pred hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-he
Confidence 2232 1478999999999999999999999999998 77
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHccc--hhHH------------------HHHHHhCChHHHH-HHHHhc----------
Q 039282 227 DGDGDDDEGAEQLFVAFAEFEERYKE--SESE------------------ALRKEFGDWVLIE-DAIVGK---------- 275 (476)
Q Consensus 227 ~~~~~~~~~~~~l~~~~a~~e~~~~~--~e~A------------------~~ek~~g~~~~~~-~~i~~~---------- 275 (476)
+..+...+|..|+.||+++-. ++-| .||......+.+- ++.+..
T Consensus 280 -----tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k 354 (835)
T KOG2047|consen 280 -----TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK 354 (835)
T ss_pred -----ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh
Confidence 777889999999999987521 1101 4555544443322 222211
Q ss_pred ---------------------cCCCCc---------hhhHHHHHHcCCHHHHHHHHHHHHhcc-CC----HHHHHHHHHH
Q 039282 276 ---------------------GKAPKD---------KAYIHFEKSQGERERRRALYERLVERT-KH----LKVWISYAKF 320 (476)
Q Consensus 276 ---------------------~~~p~~---------~~~~~~~~~~g~~e~Ar~l~e~~l~~~-~~----~~vw~~~a~~ 320 (476)
...|+. ..|++||...|+.+.||.+|+++++.. +. ..||+.||.+
T Consensus 355 RV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waem 434 (835)
T KOG2047|consen 355 RVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEM 434 (835)
T ss_pred hhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHH
Confidence 111211 188999999999999999999998876 33 4799999999
Q ss_pred HhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcC------CCChHHH-
Q 039282 321 EASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSA------PEMMEER- 393 (476)
Q Consensus 321 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~------~~~~~~r- 393 (476)
|..+ .+++.| ..+.++|........ .+.-+.|
T Consensus 435 Elrh--------------------~~~~~A---------------------l~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 435 ELRH--------------------ENFEAA---------------------LKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHhh--------------------hhHHHH---------------------HHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 9998 889999 888888875433210 0111222
Q ss_pred ---HHHHHHHHHHHHhcCCHhhHHHHHhhCC
Q 039282 394 ---VMLLEEWLNMERSFGELGDVNLVQAMLP 421 (476)
Q Consensus 394 ---~~l~~~~~~fE~~~G~~~~~~~v~~~~p 421 (476)
..||.-|+++|+.+|++++-++|..++-
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4789999999999999999999998853
No 7
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.93 E-value=4.4e-24 Score=210.29 Aligned_cols=311 Identities=14% Similarity=0.142 Sum_probs=274.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|.++|...|...-+|..+|-....+|++-.|+..|++|+.++|...++++.++.++...+.++.|...|.+|+.
T Consensus 201 ~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 201 EEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred chhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~ 200 (476)
.-|++...+-.++-++..+|.++.|+..|+|+++..|.- .++..+++.+...|+..+|...|.+++..+|+++++..++
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 999999999999999999999999999999999999984 8899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCC
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKA 278 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~ 278 (476)
+..+.+.|.++.|..+|.++++. +| .....+...+.++.++|++++| +|.......+..-+++.
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v-~p--------~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~----- 426 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV-FP--------EFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALS----- 426 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh-Ch--------hhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHH-----
Confidence 99999999999999999999999 88 7888999999999999999999 67777777777777766
Q ss_pred CCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHH
Q 039282 279 PKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKI 357 (476)
Q Consensus 279 p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 357 (476)
..+..+...|+.+.|.+.|++++..+| ..+...+++..+... |++..|
T Consensus 427 ----NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs--------------------Gni~~A------- 475 (966)
T KOG4626|consen 427 ----NMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDS--------------------GNIPEA------- 475 (966)
T ss_pred ----hcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc--------------------CCcHHH-------
Confidence 344556689999999999999999999 778888999888877 999999
Q ss_pred hHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHH---HHHHHHHHHHHhcCCHhh
Q 039282 358 YHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERV---MLLEEWLNMERSFGELGD 412 (476)
Q Consensus 358 ~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~---~l~~~~~~fE~~~G~~~~ 412 (476)
..-|+.|++.-|+.+ +....++ .+...|.++-.+.....+
T Consensus 476 --------------I~sY~~aLklkPDfp-dA~cNllh~lq~vcdw~D~d~~~~kl~s 518 (966)
T KOG4626|consen 476 --------------IQSYRTALKLKPDFP-DAYCNLLHCLQIVCDWTDYDKRMKKLVS 518 (966)
T ss_pred --------------HHHHHHHHccCCCCc-hhhhHHHHHHHHHhcccchHHHHHHHHH
Confidence 888999988766542 3333332 445567666555554433
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=2.2e-23 Score=205.40 Aligned_cols=315 Identities=15% Similarity=0.136 Sum_probs=272.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
++|...|+.+++..|.++++|+.+|..+..+|+.+.|..+|..||.++|....+...++.+....|...+|...|.+|+.
T Consensus 133 ~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~ 212 (966)
T KOG4626|consen 133 QDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIE 212 (966)
T ss_pred HHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~ 200 (476)
..|.-.-.|..++-+....|+.-.|+..|++++.++|.- +++..+++.+...+.+++|...|.+++...|++..++-++
T Consensus 213 ~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNl 292 (966)
T KOG4626|consen 213 TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNL 292 (966)
T ss_pred hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccce
Confidence 999999999999999999999999999999999999985 8899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCC
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKA 278 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~ 278 (476)
+..|..+|.++-|+..|++||+. .| ..+..+...+..+...|.+.+| .|.+.+ .+|
T Consensus 293 a~iYyeqG~ldlAI~~Ykral~~-~P--------~F~~Ay~NlanALkd~G~V~ea~~cYnkaL-------------~l~ 350 (966)
T KOG4626|consen 293 ACIYYEQGLLDLAIDTYKRALEL-QP--------NFPDAYNNLANALKDKGSVTEAVDCYNKAL-------------RLC 350 (966)
T ss_pred EEEEeccccHHHHHHHHHHHHhc-CC--------CchHHHhHHHHHHHhccchHHHHHHHHHHH-------------HhC
Confidence 99999999999999999999999 88 7788899999988888888877 333322 356
Q ss_pred CCch----hhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhh
Q 039282 279 PKDK----AYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRS 353 (476)
Q Consensus 279 p~~~----~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 353 (476)
|.+. .++..+.+.|.++.|..+|+++++..| ......+++.++..+ |++++|
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq--------------------gnl~~A--- 407 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ--------------------GNLDDA--- 407 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc--------------------ccHHHH---
Confidence 6543 678888999999999999999999999 577888899999888 788888
Q ss_pred hhHHhHHHHh-------hh----------hccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCH
Q 039282 354 HRKIYHQFAT-------CL----------ISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGEL 410 (476)
Q Consensus 354 ~~~~~~~~~~-------~~----------~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~ 410 (476)
...|.+++. .+ +++..|...|.||+...|.- +.-..........-|+.
T Consensus 408 -i~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~--------AeAhsNLasi~kDsGni 472 (966)
T KOG4626|consen 408 -IMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF--------AEAHSNLASIYKDSGNI 472 (966)
T ss_pred -HHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH--------HHHHhhHHHHhhccCCc
Confidence 666666664 11 11677889999998876543 23334444445555663
No 9
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.91 E-value=8.8e-21 Score=184.96 Aligned_cols=339 Identities=18% Similarity=0.280 Sum_probs=222.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHH----H
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMIN-KFINHARNV----W 116 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~-~~~~~A~~~----~ 116 (476)
.+.|..||+.+...|..+.+|..|+..+...++++...++|.|+|.. .-+.++|..|+..-.+. +....++.. |
T Consensus 36 ~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy 114 (656)
T KOG1914|consen 36 DKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK-VLNLDLWKLYLSYVRETKGKLFGYREKMVQAY 114 (656)
T ss_pred HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhhHhHHHHHHHHHHHHccCcchHHHHHHHHH
Confidence 67888899999999999999999999888888999999999998843 34588898888865443 222222221 2
Q ss_pred HHHHHh---CCCcHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCCCH--H---------------------
Q 039282 117 DRAVAV---LPHVDQLWYKYIRMEEI---------AGNVAAARLIFDRWMHWTPDQ--Q--------------------- 161 (476)
Q Consensus 117 ~ral~~---~p~~~~lw~~~~~~~~~---------~g~~~~A~~~~eral~~~P~~--~--------------------- 161 (476)
+=++.. ++.+..+|..|+.+... ...++..|.+|.|++...-.+ .
T Consensus 115 ~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i 194 (656)
T KOG1914|consen 115 DFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFI 194 (656)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221 23344555555555332 123445555555555331111 3
Q ss_pred --------------------------------------------HHHHHHHHHHHhh--------hHHHHHHHHHHHHHh
Q 039282 162 --------------------------------------------AWLSYIKFELRYE--------QVELARQVFERLVQC 189 (476)
Q Consensus 162 --------------------------------------------~w~~~~~~~~~~g--------~~~~A~~~~~r~l~~ 189 (476)
+|..+|.++...+ -..+..-+|++++..
T Consensus 195 ~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~ 274 (656)
T KOG1914|consen 195 GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLY 274 (656)
T ss_pred HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH
Confidence 3555555554332 122334456667777
Q ss_pred CCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccc---
Q 039282 190 HPNVVSSWIKYAKFEMRRGE--------------IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE--- 252 (476)
Q Consensus 190 ~p~~~~~w~~~a~~~~~~g~--------------~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~--- 252 (476)
.+-++++|+.++.+....++ .+++..+|+++++. .. ..+..++..++.+++..-+
T Consensus 275 l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~-l~-------~~~~~Ly~~~a~~eE~~~~~n~ 346 (656)
T KOG1914|consen 275 LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEG-LL-------KENKLLYFALADYEESRYDDNK 346 (656)
T ss_pred HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHhhHHHhcccch
Confidence 77788999999999988877 78999999999998 43 3577889999998877533
Q ss_pred hhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCC
Q 039282 253 SESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDG 329 (476)
Q Consensus 253 ~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~ 329 (476)
.+.. .+++..+. .......-...|..|-.+......||.+|.++-+..- ..+|++.-|.+|..+
T Consensus 347 ~~~~~~~~~~ll~~--------~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c----- 413 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKI--------EDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC----- 413 (656)
T ss_pred hhhhHHHHHHHHhh--------hccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-----
Confidence 2111 11111110 0011111122677888889999999999999977654 236777777776665
Q ss_pred CCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhh-----------------hccCchhHHHHHHHHHhhhcCCCChHH
Q 039282 330 GNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCL-----------------ISSLSSSGVFEKGINYYKTSAPEMMEE 392 (476)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------------~~~~~~r~ifera~~~~~~~~~~~~~~ 392 (476)
.++..-| .+||+..|+.+ .+.+|+|.+|+|++.. .-++ +.
T Consensus 414 --------------skD~~~A----frIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~l~~----~k 470 (656)
T KOG1914|consen 414 --------------SKDKETA----FRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-VLSA----DK 470 (656)
T ss_pred --------------cCChhHH----HHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-cCCh----hh
Confidence 2455666 77777777632 2279999999999987 1111 12
Q ss_pred HHHHHHHHHHHHHhcCCHhhHHHHHhhCChhhh
Q 039282 393 RVMLLEEWLNMERSFGELGDVNLVQAMLPKKLK 425 (476)
Q Consensus 393 r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~~~ 425 (476)
-..+|..|++||..+||..++.+|.+|+-...+
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 267999999999999999999999987554433
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.90 E-value=2.5e-20 Score=199.19 Aligned_cols=310 Identities=11% Similarity=0.070 Sum_probs=207.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|+++|..+|+ ...|..+|.++...|++++|+..+++++.++|+++.+|...+.++...|+++.|...|..++.
T Consensus 144 ~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~ 222 (615)
T TIGR00990 144 NKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCI 222 (615)
T ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4899999999999995 778999999999999999999999999999999999999999988888888777654433321
Q ss_pred h-------------------------------------------------------------------------------
Q 039282 122 V------------------------------------------------------------------------------- 122 (476)
Q Consensus 122 ~------------------------------------------------------------------------------- 122 (476)
.
T Consensus 223 ~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 302 (615)
T TIGR00990 223 IDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSP 302 (615)
T ss_pred hCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHH
Confidence 1
Q ss_pred ------------------------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHH
Q 039282 123 ------------------------LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVE 177 (476)
Q Consensus 123 ------------------------~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~ 177 (476)
.|.....|..++.++...|+++.|+..|++++..+|.. ..|..++.++...|+++
T Consensus 303 e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~ 382 (615)
T TIGR00990 303 ESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPD 382 (615)
T ss_pred HhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHH
Confidence 13333445555555556666666666666666666653 55666666666666666
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH-
Q 039282 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE- 256 (476)
Q Consensus 178 ~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A- 256 (476)
+|...|++++..+|+++.+|..++.++...|++++|...|++++.. .| .....+...+..+...|++++|
T Consensus 383 eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-~P--------~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 383 KAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-DP--------DFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-Cc--------cCHHHHHHHHHHHHHCCCHHHHH
Confidence 6666666666666666666666666666666666666666666666 55 3344555666666666666666
Q ss_pred -HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHH------HHHH-HHhhcCCC
Q 039282 257 -ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWI------SYAK-FEASALSK 327 (476)
Q Consensus 257 -~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~------~~a~-~e~~~~~~ 327 (476)
.|++.....+....+.. .++..+...|++++|+..|++++...| +..+|. ..+. +....
T Consensus 454 ~~~~~al~~~P~~~~~~~---------~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~--- 521 (615)
T TIGR00990 454 ATFRRCKKNFPEAPDVYN---------YYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWK--- 521 (615)
T ss_pred HHHHHHHHhCCCChHHHH---------HHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHh---
Confidence 23332221111111111 567788889999999999999999877 322222 2121 12222
Q ss_pred CCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhc
Q 039282 328 DGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSF 407 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~ 407 (476)
+++++| ..+|++|+...+.+ ...+..........
T Consensus 522 -----------------~~~~eA---------------------~~~~~kAl~l~p~~--------~~a~~~la~~~~~~ 555 (615)
T TIGR00990 522 -----------------QDFIEA---------------------ENLCEKALIIDPEC--------DIAVATMAQLLLQQ 555 (615)
T ss_pred -----------------hhHHHH---------------------HHHHHHHHhcCCCc--------HHHHHHHHHHHHHc
Confidence 788888 77777777654433 23455556666667
Q ss_pred CCHhhHHHHHhh
Q 039282 408 GELGDVNLVQAM 419 (476)
Q Consensus 408 G~~~~~~~v~~~ 419 (476)
|+.+.+.....+
T Consensus 556 g~~~eAi~~~e~ 567 (615)
T TIGR00990 556 GDVDEALKLFER 567 (615)
T ss_pred cCHHHHHHHHHH
Confidence 776665555444
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.90 E-value=2e-20 Score=207.82 Aligned_cols=327 Identities=13% Similarity=0.099 Sum_probs=265.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...+..++..+...|++++|..++++++..+|.++.+|..++.++...|+++.|...|++++.
T Consensus 550 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 629 (899)
T TIGR02917 550 EEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629 (899)
T ss_pred HHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~ 200 (476)
..|.++..|..++.++...|+++.|..+|++++...|++ ..|..++.++...|+++.|..+++.+....|.++..+..+
T Consensus 630 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 709 (899)
T TIGR02917 630 LQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELE 709 (899)
T ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHH
Confidence 999999999999999999999999999999999999985 7899999999999999999999999999999989999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCC
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKA 278 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~ 278 (476)
+..+...|++++|...|++++.. .| + . ..+..++.++...|++++| .+++.....+....+..
T Consensus 710 ~~~~~~~g~~~~A~~~~~~~~~~-~~-----~---~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~----- 774 (899)
T TIGR02917 710 GDLYLRQKDYPAAIQAYRKALKR-AP-----S---S-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT----- 774 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh-CC-----C---c-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----
Confidence 99999999999999999999998 77 3 2 4566778888889999888 45554433332222322
Q ss_pred CCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHH
Q 039282 279 PKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKI 357 (476)
Q Consensus 279 p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 357 (476)
..+.++...|++++|..+|+++++..| ++.++..++......+ + .+| +.+
T Consensus 775 ----~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~--------------------~-~~A----~~~ 825 (899)
T TIGR02917 775 ----ALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK--------------------D-PRA----LEY 825 (899)
T ss_pred ----HHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC--------------------c-HHH----HHH
Confidence 456677778888888888888888887 6777777777776662 3 233 222
Q ss_pred hHHHHhh--------------h---hccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhC
Q 039282 358 YHQFATC--------------L---ISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAML 420 (476)
Q Consensus 358 ~~~~~~~--------------~---~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~ 420 (476)
+++++.. + ...+.|..+|++++...+.+ ..++..........|+.+.+..+..++
T Consensus 826 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 826 AEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA--------AAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3222220 0 00234499999998876543 346666677777889988888877664
No 12
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.89 E-value=3.6e-20 Score=205.70 Aligned_cols=335 Identities=10% Similarity=0.112 Sum_probs=210.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
.+|...+++.+...|.+...|..+|..+...|++++|+.+|++++..+|.++.++..++.++...|+++.|..+|++++.
T Consensus 448 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 527 (899)
T TIGR02917 448 DKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLT 527 (899)
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46677777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~ 200 (476)
..|.+..+|..++.++...|+.+.|+..|++++...|.. ..+..++..+...|++++|..++++++...|.++.+|..+
T Consensus 528 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 607 (899)
T TIGR02917 528 IDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLML 607 (899)
T ss_pred hCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 777777777777777777777777777777777766654 5566666666667777777777777776666666777777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHH-----
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIV----- 273 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~----- 273 (476)
+..+...|+++.|...|+++++. .| .....+..++.++...|++++| .|++.....+....+..
T Consensus 608 ~~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 678 (899)
T TIGR02917 608 GRAQLAAGDLNKAVSSFKKLLAL-QP--------DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQL 678 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CC--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 77777777777777777777666 55 3344556666666666666666 34333222111000000
Q ss_pred ---------------h-ccCCCCch----hhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCCCCC
Q 039282 274 ---------------G-KGKAPKDK----AYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPD 333 (476)
Q Consensus 274 ---------------~-~~~~p~~~----~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~~~~~~~~~~ 333 (476)
. ....|.+. ..+..+...|++++|...|++++...|+..++..++......
T Consensus 679 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~--------- 749 (899)
T TIGR02917 679 LLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLAS--------- 749 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHC---------
Confidence 0 01112111 344566677777778888877777777556677777666665
Q ss_pred CchhHHHHhhHhhHHhhhhhhhHHhHHHHhh--------------h---hccCchhHHHHHHHHHhhhcCCCChHHHHHH
Q 039282 334 LSEADLCERKKQSIRGARRSHRKIYHQFATC--------------L---ISSLSSSGVFEKGINYYKTSAPEMMEERVML 396 (476)
Q Consensus 334 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--------------~---~~~~~~r~ifera~~~~~~~~~~~~~~r~~l 396 (476)
|++.+| .+.+.+++.. + .+.+.|..+|++++...+.. ..+
T Consensus 750 -----------g~~~~A----~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~--------~~~ 806 (899)
T TIGR02917 750 -----------GNTAEA----VKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN--------AVV 806 (899)
T ss_pred -----------CCHHHH----HHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC--------HHH
Confidence 555555 3333333320 1 11355577888877765543 344
Q ss_pred HHHHHHHHHhcCCHhhHHHHHh
Q 039282 397 LEEWLNMERSFGELGDVNLVQA 418 (476)
Q Consensus 397 ~~~~~~fE~~~G~~~~~~~v~~ 418 (476)
+..........|+ ..+..+.+
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHH
Confidence 5555555556666 33444333
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=4.8e-20 Score=197.19 Aligned_cols=264 Identities=11% Similarity=-0.037 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|+..++..+..+|.+...+..++......|+++.|...|++++..+|.++..|..++.++...|+++.|...|++++.
T Consensus 59 ~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~ 138 (656)
T PRK15174 59 DVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWL 138 (656)
T ss_pred chhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35667777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPN-VVSSWIK 199 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~-~~~~w~~ 199 (476)
..|.+..+|..++.++...|+++.|...+.+++...|++ ..+... ..+...|++++|...+++++...|. ....+..
T Consensus 139 l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~ 217 (656)
T PRK15174 139 AFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGL 217 (656)
T ss_pred hCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH
Confidence 777777777777777777777777777777777766664 233222 2355667777777777776666542 2233334
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhH----H--HHHHHhCChHHHHHHHH
Q 039282 200 YAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESES----E--ALRKEFGDWVLIEDAIV 273 (476)
Q Consensus 200 ~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~----A--~~ek~~g~~~~~~~~i~ 273 (476)
.+..+...|++++|...|.+++.. .| ....++..++..+...|+++. | .|++.....+....+..
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~-~p--------~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~ 288 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALAR-GL--------DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVT 288 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc-CC--------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 455666667777777777777766 55 345566666666666666653 2 33433332222222222
Q ss_pred hccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 274 GKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 274 ~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
.++..+...|++++|...|++++...| ++.++..++......
T Consensus 289 ---------~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 289 ---------LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred ---------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 455666666777777777777776666 566666666666655
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.89 E-value=1.5e-20 Score=201.00 Aligned_cols=259 Identities=13% Similarity=0.150 Sum_probs=225.1
Q ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRR---VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDR 118 (476)
Q Consensus 42 ~~a~~~~e~~l~~---~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~r 118 (476)
..|...|++++.. .|.....|..+|.++...|+++.|+..|++++.++|.+...|+.++.++...|+++.|...|++
T Consensus 311 ~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~ 390 (615)
T TIGR00990 311 EEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDK 390 (615)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3788899999976 4777889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSW 197 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w 197 (476)
++...|.++.+|+.++.++...|+++.|+..|++++..+|++ ..|..++..+.+.|++++|...|++++..+|+++.+|
T Consensus 391 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~ 470 (615)
T TIGR00990 391 ALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVY 470 (615)
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence 999999999999999999999999999999999999999986 7788899999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccC
Q 039282 198 IKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGK 277 (476)
Q Consensus 198 ~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~ 277 (476)
..++.++...|++++|+..|++++.. .| . ....+.....+..
T Consensus 471 ~~lg~~~~~~g~~~~A~~~~~~Al~l-~p-----~---~~~~~~~~~~l~~----------------------------- 512 (615)
T TIGR00990 471 NYYGELLLDQNKFDEAIEKFDTAIEL-EK-----E---TKPMYMNVLPLIN----------------------------- 512 (615)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc-CC-----c---cccccccHHHHHH-----------------------------
Confidence 99999999999999999999999998 76 2 1111111111000
Q ss_pred CCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhH
Q 039282 278 APKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRK 356 (476)
Q Consensus 278 ~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 356 (476)
..+.++...|++++|..+|++++...| +...|..++...... |++++|
T Consensus 513 -----~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~--------------------g~~~eA------ 561 (615)
T TIGR00990 513 -----KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQ--------------------GDVDEA------ 561 (615)
T ss_pred -----HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc--------------------cCHHHH------
Confidence 011122346999999999999999998 677899999999988 899999
Q ss_pred HhHHHHhhhhccCchhHHHHHHHHHhhh
Q 039282 357 IYHQFATCLISSLSSSGVFEKGINYYKT 384 (476)
Q Consensus 357 ~~~~~~~~~~~~~~~r~ifera~~~~~~ 384 (476)
...|++|+...+.
T Consensus 562 ---------------i~~~e~A~~l~~~ 574 (615)
T TIGR00990 562 ---------------LKLFERAAELART 574 (615)
T ss_pred ---------------HHHHHHHHHHhcc
Confidence 9999999887654
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=8.9e-20 Score=207.42 Aligned_cols=342 Identities=14% Similarity=0.153 Sum_probs=271.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHH--HH------------HHHHHHHHHcC
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHT--LW------------CKYAEFEMINK 107 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~--lw------------~~y~~~e~~~~ 107 (476)
..|...|+++++.+|.+..+|..+|.++...|++++|+..|++++..+|.+.. .| ...+......|
T Consensus 286 ~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g 365 (1157)
T PRK11447 286 GKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKAN 365 (1157)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCC
Confidence 58999999999999999999999999999999999999999999999998753 22 23366778899
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHH-------------------
Q 039282 108 FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYI------------------- 167 (476)
Q Consensus 108 ~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~------------------- 167 (476)
+++.|+..|++++...|.+...+..++.++...|+++.|+..|++++..+|++ .++..++
T Consensus 366 ~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 366 NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLS 445 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999985 3333222
Q ss_pred -----------------------HHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 039282 168 -----------------------KFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKK 224 (476)
Q Consensus 168 -----------------------~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~ 224 (476)
..+...|++++|+..|++++..+|+++.++..++.++...|++++|...|++++..
T Consensus 446 ~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~- 524 (1157)
T PRK11447 446 ASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ- 524 (1157)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Confidence 23345689999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHh------------------------------CChHHHHHHH
Q 039282 225 LADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEF------------------------------GDWVLIEDAI 272 (476)
Q Consensus 225 ~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~------------------------------g~~~~~~~~i 272 (476)
.| .....+..++.+....++.++| .+++.. |.......++
T Consensus 525 ~P--------~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 525 KP--------NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred CC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 77 4455666677777777777776 232211 1111111111
Q ss_pred HhccCCCCch----hhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhH
Q 039282 273 VGKGKAPKDK----AYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSI 347 (476)
Q Consensus 273 ~~~~~~p~~~----~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (476)
...|.+. .+++.+...|++++|+..|++++...| ++..+..++.+.... |++
T Consensus 597 ---~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~--------------------g~~ 653 (1157)
T PRK11447 597 ---RQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ--------------------GDL 653 (1157)
T ss_pred ---HhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--------------------CCH
Confidence 1233332 677888999999999999999999999 899999999999888 555
Q ss_pred HhhhhhhhHHhHHHHh--------------hhh---ccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCH
Q 039282 348 RGARRSHRKIYHQFAT--------------CLI---SSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGEL 410 (476)
Q Consensus 348 ~~A~~~~~~~~~~~~~--------------~~~---~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~ 410 (476)
++| +..|..++. .+. ..+.|..+|++++...+..++. .....++.....+....|+.
T Consensus 654 ~eA----~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~--~~~a~~~~~~a~~~~~~G~~ 727 (1157)
T PRK11447 654 AAA----RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPS--MESALVLRDAARFEAQTGQP 727 (1157)
T ss_pred HHH----HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcc--hhhHHHHHHHHHHHHHcCCH
Confidence 666 444443332 111 1455699999998876554321 22477888889999999999
Q ss_pred hhHHHHHhhCC
Q 039282 411 GDVNLVQAMLP 421 (476)
Q Consensus 411 ~~~~~v~~~~p 421 (476)
+.+....++.-
T Consensus 728 ~~A~~~y~~Al 738 (1157)
T PRK11447 728 QQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHHHH
Confidence 99999998774
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=4.9e-20 Score=197.11 Aligned_cols=279 Identities=9% Similarity=-0.035 Sum_probs=236.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...|..++..+...|+++.|+..|++++.++|.++.+|..++.++...|+++.|...+++++.
T Consensus 93 ~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 93 DAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ--QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK 199 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~--~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~ 199 (476)
..|.++..+...+. +...|+++.|...+.+++...|.. ..+...+..+...|++++|...|++++..+|+++.++..
T Consensus 173 ~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 173 EVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred hCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99998888876544 677899999999999999987643 334445677788999999999999999999999999999
Q ss_pred HHHHHHHcCCHHH----HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHH
Q 039282 200 YAKFEMRRGEIDR----ARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIV 273 (476)
Q Consensus 200 ~a~~~~~~g~~~~----A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~ 273 (476)
++..+...|+++. |...|++++.. .| +...++..++..+...|+++.| .+++.....+....+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-~P--------~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF-NS--------DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh-CC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 9999999999985 89999999999 88 5678899999999999999998 34443332222222222
Q ss_pred hccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhh
Q 039282 274 GKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARR 352 (476)
Q Consensus 274 ~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (476)
.++..+...|+++.|+..|++++...| +...+...+...... |+++.|
T Consensus 323 ---------~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~--------------------G~~deA-- 371 (656)
T PRK15174 323 ---------MYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA--------------------GKTSEA-- 371 (656)
T ss_pred ---------HHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC--------------------CCHHHH--
Confidence 567888899999999999999999998 455455556666666 777888
Q ss_pred hhhHHhHHHHh
Q 039282 353 SHRKIYHQFAT 363 (476)
Q Consensus 353 ~~~~~~~~~~~ 363 (476)
+..|.+++.
T Consensus 372 --~~~l~~al~ 380 (656)
T PRK15174 372 --ESVFEHYIQ 380 (656)
T ss_pred --HHHHHHHHH
Confidence 666666654
No 17
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.88 E-value=8.2e-21 Score=201.37 Aligned_cols=253 Identities=22% Similarity=0.428 Sum_probs=219.3
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----cHHHHHHHHHHHHHhCCHHHHHHHHH
Q 039282 77 RARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVL-PH----VDQLWYKYIRMEEIAGNVAAARLIFD 151 (476)
Q Consensus 77 ~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~-p~----~~~lw~~~~~~~~~~g~~~~A~~~~e 151 (476)
....-|+|.+..+|++.-+|+.|+.+.+..+.++.||.+++|||... ++ -..+|..|..++...|.-+...++|+
T Consensus 1442 esaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFe 1521 (1710)
T KOG1070|consen 1442 ESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFE 1521 (1710)
T ss_pred cCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999754 33 36799999999999998899999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC
Q 039282 152 RWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGD 231 (476)
Q Consensus 152 ral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~ 231 (476)
||.+.+-...++..+..++...+.++.|-++|+.+++.+.+...+|..|+.++.++++-+.|+.++.+|+.. +|
T Consensus 1522 RAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~-lP----- 1595 (1710)
T KOG1070|consen 1522 RACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS-LP----- 1595 (1710)
T ss_pred HHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh-cc-----
Confidence 999998777889999999999999999999999999999988999999999999999999999999999999 88
Q ss_pred ChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-C
Q 039282 232 DDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-H 310 (476)
Q Consensus 232 ~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~ 310 (476)
. .....+... +++++.+.|+.+++|.+|+-.|...| .
T Consensus 1596 k-~eHv~~Isk-----------------------------------------fAqLEFk~GDaeRGRtlfEgll~ayPKR 1633 (1710)
T KOG1070|consen 1596 K-QEHVEFISK-----------------------------------------FAQLEFKYGDAERGRTLFEGLLSAYPKR 1633 (1710)
T ss_pred h-hhhHHHHHH-----------------------------------------HHHHHhhcCCchhhHHHHHHHHhhCccc
Confidence 2 223334333 45556688999999999999999999 8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHh-hhcCCCC
Q 039282 311 LKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYY-KTSAPEM 389 (476)
Q Consensus 311 ~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~-~~~~~~~ 389 (476)
.++|.-|+..|..+ ++...+ |.+|+|++..- ... .+
T Consensus 1634 tDlW~VYid~eik~--------------------~~~~~v---------------------R~lfeRvi~l~l~~k--km 1670 (1710)
T KOG1070|consen 1634 TDLWSVYIDMEIKH--------------------GDIKYV---------------------RDLFERVIELKLSIK--KM 1670 (1710)
T ss_pred hhHHHHHHHHHHcc--------------------CCHHHH---------------------HHHHHHHHhcCCChh--Hh
Confidence 89999999999999 888999 99999998753 221 22
Q ss_pred hHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCChhh
Q 039282 390 MEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKL 424 (476)
Q Consensus 390 ~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~~ 424 (476)
-.++..|++||..|||.+.++.|..|.-.-|
T Consensus 1671 ----KfffKkwLeyEk~~Gde~~vE~VKarA~EYv 1701 (1710)
T KOG1070|consen 1671 ----KFFFKKWLEYEKSHGDEKNVEYVKARAKEYV 1701 (1710)
T ss_pred ----HHHHHHHHHHHHhcCchhhHHHHHHHHHHHH
Confidence 4689999999999999999999988765544
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.87 E-value=8.8e-19 Score=199.33 Aligned_cols=282 Identities=15% Similarity=0.128 Sum_probs=222.6
Q ss_pred HHHHHHHHHHHHhCCCCHH--HH------------HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 039282 42 LHKRNDFEDSIRRVPGDTA--VW------------INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK 107 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~--~w------------~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~ 107 (476)
..|+..|+++++.+|.+.. .| +..+..+...|++++|+..|++++..+|.++.++..++.++...|
T Consensus 320 ~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g 399 (1157)
T PRK11447 320 ARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK 399 (1157)
T ss_pred HHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 5899999999999997642 23 234667778999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHH------------------------------------------HHHhCCHHH
Q 039282 108 FINHARNVWDRAVAVLPHVDQLWYKYIRM------------------------------------------EEIAGNVAA 145 (476)
Q Consensus 108 ~~~~A~~~~~ral~~~p~~~~lw~~~~~~------------------------------------------~~~~g~~~~ 145 (476)
+++.|...|++++...|.+...+..++.+ +...|+++.
T Consensus 400 ~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e 479 (1157)
T PRK11447 400 DYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479 (1157)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence 99999999999999999987776655443 335689999
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 039282 146 ARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKK 224 (476)
Q Consensus 146 A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~ 224 (476)
|+..|++++...|++ .++..++..+.+.|++++|...|++++...|+++..+..++.++...|+.++|...++++....
T Consensus 480 A~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~ 559 (1157)
T PRK11447 480 AAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQ 559 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchh
Confidence 999999999999986 7788899999999999999999999999999999999999988888899999888877642210
Q ss_pred ---------------------------------------cCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhC
Q 039282 225 ---------------------------------------LADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFG 263 (476)
Q Consensus 225 ---------------------------------------~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g 263 (476)
.| ....++..++.++...|+++.| .|++...
T Consensus 560 ~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p--------~~~~~~~~La~~~~~~g~~~~A~~~y~~al~ 631 (1157)
T PRK11447 560 WNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQP--------PSTRIDLTLADWAQQRGDYAAARAAYQRVLT 631 (1157)
T ss_pred cChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCC--------CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 1223455566666666666666 3444333
Q ss_pred ChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHh
Q 039282 264 DWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCER 342 (476)
Q Consensus 264 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~ 342 (476)
..+....+.. .++.++...|++++|+..|++++...| ++.++..++......
T Consensus 632 ~~P~~~~a~~---------~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~------------------ 684 (1157)
T PRK11447 632 REPGNADARL---------GLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL------------------ 684 (1157)
T ss_pred hCCCCHHHHH---------HHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC------------------
Confidence 2222222222 667888899999999999999999888 778888888887776
Q ss_pred hHhhHHhhhhhhhHHhHHHHhh
Q 039282 343 KKQSIRGARRSHRKIYHQFATC 364 (476)
Q Consensus 343 ~~~~~~~A~~~~~~~~~~~~~~ 364 (476)
|++++| ..+|++++..
T Consensus 685 --g~~~eA----~~~~~~al~~ 700 (1157)
T PRK11447 685 --GDTAAA----QRTFNRLIPQ 700 (1157)
T ss_pred --CCHHHH----HHHHHHHhhh
Confidence 777778 6667666653
No 19
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=4.6e-18 Score=171.85 Aligned_cols=263 Identities=13% Similarity=0.146 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN----HTLWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~----~~lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
..|...|++++..+|.+...|..++.++...|++++|..++++++...+.. ...+..++..+...|+++.|..+|+
T Consensus 52 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 131 (389)
T PRK11788 52 DKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFL 131 (389)
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 479999999999999999999999999999999999999999999754332 3578899999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 039282 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ------QAWLSYIKFELRYEQVELARQVFERLVQCHP 191 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p 191 (476)
+++...|.+...+..++.++...|+++.|...|.+++...|.+ ..+..++..+...|++++|...|++++...|
T Consensus 132 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 211 (389)
T PRK11788 132 QLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADP 211 (389)
T ss_pred HHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc
Confidence 9999999889999999999999999999999999999988763 2456677788899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHH
Q 039282 192 NVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIE 269 (476)
Q Consensus 192 ~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~ 269 (476)
++..++..++.++...|++++|..+|++++.. .| + .....+...+..+...|+++.| .+++.....+...
T Consensus 212 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p-----~--~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 212 QCVRASILLGDLALAQGDYAAAIEALERVEEQ-DP-----E--YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-Ch-----h--hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 99999999999999999999999999999988 65 2 3345677778888899999988 3444332222111
Q ss_pred HHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 039282 270 DAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEA 322 (476)
Q Consensus 270 ~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~ 322 (476)
.+ . .++..+...|+++.|..+|+++++..|+...+..+.....
T Consensus 284 ~~-~---------~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 284 LL-L---------ALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HH-H---------HHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 11 1 5678888999999999999999999996655655554433
No 20
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.7e-17 Score=167.70 Aligned_cols=266 Identities=12% Similarity=0.054 Sum_probs=223.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHH
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV----DQLWYKYIRM 136 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~----~~lw~~~~~~ 136 (476)
..+..|..+...|+++.|...|++++..+|.++.+|..++.++...|+++.|..++++++...+.. ...+..++..
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~ 116 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQD 116 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 344446677788999999999999999999999999999999999999999999999999864432 2568888999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCH
Q 039282 137 EEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVV-----SSWIKYAKFEMRRGEI 210 (476)
Q Consensus 137 ~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~-----~~w~~~a~~~~~~g~~ 210 (476)
+...|+++.|..+|.+++...|.. ..+..++.++...|++++|...|++++...|.+. ..+..++..+...|++
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 999999999999999999988765 7888999999999999999999999999888643 3566788889999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHH-HHHHHHhccCCCCchhhHHH
Q 039282 211 DRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVL-IEDAIVGKGKAPKDKAYIHF 287 (476)
Q Consensus 211 ~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~-~~~~i~~~~~~p~~~~~~~~ 287 (476)
++|...|+++++. .| .....+...+..+...|++++| .|++.....+. ...++. .++..
T Consensus 197 ~~A~~~~~~al~~-~p--------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~---------~l~~~ 258 (389)
T PRK11788 197 DAARALLKKALAA-DP--------QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLP---------KLMEC 258 (389)
T ss_pred HHHHHHHHHHHhH-Cc--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHH---------HHHHH
Confidence 9999999999998 77 4556778889999999999999 56655432222 122222 45677
Q ss_pred HHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhc
Q 039282 288 EKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLIS 367 (476)
Q Consensus 288 ~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 367 (476)
+...|++++|...+++++...|+..+...++...... |++++|
T Consensus 259 ~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~--------------------g~~~~A----------------- 301 (389)
T PRK11788 259 YQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQ--------------------EGPEAA----------------- 301 (389)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh--------------------CCHHHH-----------------
Confidence 7899999999999999999999666678888888877 899999
Q ss_pred cCchhHHHHHHHHHhhhc
Q 039282 368 SLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 368 ~~~~r~ifera~~~~~~~ 385 (476)
..+|+++++..|+.
T Consensus 302 ----~~~l~~~l~~~P~~ 315 (389)
T PRK11788 302 ----QALLREQLRRHPSL 315 (389)
T ss_pred ----HHHHHHHHHhCcCH
Confidence 99999999886544
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.82 E-value=8e-17 Score=175.80 Aligned_cols=318 Identities=10% Similarity=0.025 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...+..++.++...|++++|+..+++++..+|.++. |..++.++...|++..|...|++++.
T Consensus 66 ~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 66 QNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 47888899999999999999999999998999999999999999999999988 98899988899999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHH----------------------------------------------HHHh
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFD----------------------------------------------RWMH 155 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~e----------------------------------------------ral~ 155 (476)
..|++..++..++.++...+..+.|...++ +++.
T Consensus 145 ~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~ 224 (765)
T PRK10049 145 RAPQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEA 224 (765)
T ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHh
Confidence 999988888888887766666554444443 3332
Q ss_pred c---CCCH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 039282 156 W---TPDQ-----QAWLSYIKFELRYEQVELARQVFERLVQCHP---NVVSSWIKYAKFEMRRGEIDRARNVYERALEKK 224 (476)
Q Consensus 156 ~---~P~~-----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p---~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~ 224 (476)
. +|.. .++...+..+...|++++|+..|++++...| .+...| ++.++...|++++|..+|++++..
T Consensus 225 ~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~- 301 (765)
T PRK10049 225 LWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYH- 301 (765)
T ss_pred hcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhc-
Confidence 2 2221 0111111223455778888888888777653 333334 477778888888888888887766
Q ss_pred cCCCCCCCh-hhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCch------hhHHHHHHcCCHH
Q 039282 225 LADGDGDDD-EGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDK------AYIHFEKSQGERE 295 (476)
Q Consensus 225 ~p~~~~~~~-~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~------~~~~~~~~~g~~e 295 (476)
.| .. .........++..+...|++++| .+++.....+....+.......|++. .++.++...|+++
T Consensus 302 ~p-----~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 302 PE-----TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred CC-----CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 44 11 01122333444444667777777 23333222110000000001122221 4567788999999
Q ss_pred HHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHH
Q 039282 296 RRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGV 374 (476)
Q Consensus 296 ~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~i 374 (476)
+|+.++++++...| +..+|..++...... |++..| ..+
T Consensus 377 eA~~~l~~al~~~P~n~~l~~~lA~l~~~~--------------------g~~~~A---------------------~~~ 415 (765)
T PRK10049 377 QAEMRARELAYNAPGNQGLRIDYASVLQAR--------------------GWPRAA---------------------ENE 415 (765)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhc--------------------CCHHHH---------------------HHH
Confidence 99999999999999 899999999999988 899999 999
Q ss_pred HHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHH
Q 039282 375 FEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQ 417 (476)
Q Consensus 375 fera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~ 417 (476)
+++|+...|++ ..++..-.......|+.+.+..+.
T Consensus 416 l~~al~l~Pd~--------~~l~~~~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 416 LKKAEVLEPRN--------INLEVEQAWTALDLQEWRQMDVLT 450 (765)
T ss_pred HHHHHhhCCCC--------hHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99999988765 234444444555667765554444
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=2.2e-17 Score=159.67 Aligned_cols=334 Identities=16% Similarity=0.161 Sum_probs=249.2
Q ss_pred ccHHHHHHHHhhccCCCCCCChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC
Q 039282 13 KTAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN 92 (476)
Q Consensus 13 i~a~q~l~~a~~~~~~~~i~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~ 92 (476)
.|.++.+..|..-..+. ..---.+.| ..|++.|..+|..+|+-+..+...+.+|.+.|++++.++-..+||+++|++
T Consensus 106 ~~~e~~~k~A~~lK~~G--N~~f~~kkY-~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y 182 (606)
T KOG0547|consen 106 MLKEERLKYAAALKTKG--NKFFRNKKY-DEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY 182 (606)
T ss_pred cChHHHHHHHHHHHhhh--hhhhhcccH-HHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH
Confidence 56677777776521000 000011223 488999999999999888888899999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHH------------------------------------------------------------
Q 039282 93 HTLWCKYAEFEMINKFINHA------------------------------------------------------------ 112 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A------------------------------------------------------------ 112 (476)
+.+.++-+......|++++|
T Consensus 183 ~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~ 262 (606)
T KOG0547|consen 183 VKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFH 262 (606)
T ss_pred HHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcc
Confidence 76666666666665554443
Q ss_pred --------------------------------------------------------------------------------
Q 039282 113 -------------------------------------------------------------------------------- 112 (476)
Q Consensus 113 -------------------------------------------------------------------------------- 112 (476)
T Consensus 263 ~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~ 342 (606)
T KOG0547|consen 263 ADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS 342 (606)
T ss_pred ccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence
Q ss_pred ---HHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039282 113 ---RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQ 188 (476)
Q Consensus 113 ---~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~ 188 (476)
...|+.++.++|..+.++...+.++....+...-...|..+..++|.+ ++++..+++..-.++++.|..-|++++.
T Consensus 343 ~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~ 422 (606)
T KOG0547|consen 343 LGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS 422 (606)
T ss_pred hhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444445556666666666667777777788888888875 7888899999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChH
Q 039282 189 CHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWV 266 (476)
Q Consensus 189 ~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~ 266 (476)
++|++.-.++.++-.+.+++.++.+...|+.++.. +| ..++++..|++.+..+++|+.| .|.+...-.+
T Consensus 423 L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP--------~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~ 493 (606)
T KOG0547|consen 423 LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FP--------NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP 493 (606)
T ss_pred cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CC--------CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999 99 8899999999999999999999 4544332222
Q ss_pred HHHHHHHhccCCCC-chhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhH
Q 039282 267 LIEDAIVGKGKAPK-DKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKK 344 (476)
Q Consensus 267 ~~~~~i~~~~~~p~-~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
....++. +..|- ++..+.+-.+ +++..|..+++++++.+| ....+..+++|+.+.
T Consensus 494 ~~~~~~v--~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~-------------------- 550 (606)
T KOG0547|consen 494 REHLIIV--NAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQR-------------------- 550 (606)
T ss_pred ccccccc--cchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH--------------------
Confidence 1111111 11110 1133333333 899999999999999999 667899999999998
Q ss_pred hhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCH
Q 039282 345 QSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGEL 410 (476)
Q Consensus 345 ~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~ 410 (476)
|++++| ..+|++++.+.+.. ..++.++.--|..+.+.
T Consensus 551 ~~i~eA---------------------ielFEksa~lArt~--------~E~~~a~s~aeAAraq~ 587 (606)
T KOG0547|consen 551 GKIDEA---------------------IELFEKSAQLARTE--------SEMVHAYSLAEAARAQI 587 (606)
T ss_pred hhHHHH---------------------HHHHHHHHHHHHhH--------HHHHHHHHHHHHHhhhH
Confidence 999999 99999999887755 45666665556664444
No 23
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.81 E-value=2.9e-19 Score=172.45 Aligned_cols=264 Identities=15% Similarity=0.145 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-h-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALE-E-DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~-~-~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~ 137 (476)
...+.+|.++...|++++|.+++.+++. . .|.++.+|..++.+....++++.|+..|++++...|.++.....++.+
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l- 87 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL- 87 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 3445778888888888888888866554 3 477888888888888888888888888888888877777777777777
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 039282 138 EIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCH--PNVVSSWIKYAKFEMRRGEIDRARN 215 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~--p~~~~~w~~~a~~~~~~g~~~~A~~ 215 (476)
...+++..|..+++++.+..+++..|..++.++.+.++++++..+++++.... |.++.+|..+|.++.+.|+.++|..
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 88 LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 57778888888888877777777777778888888888888888888866543 5567788888888888888888888
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCC-chhhHHHHHHcCCH
Q 039282 216 VYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPK-DKAYIHFEKSQGER 294 (476)
Q Consensus 216 ~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~-~~~~~~~~~~~g~~ 294 (476)
+|+++++. .| ++..+...++.++...|+++++ ...+..........|. ...++..+...|++
T Consensus 168 ~~~~al~~-~P--------~~~~~~~~l~~~li~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 168 DYRKALEL-DP--------DDPDARNALAWLLIDMGDYDEA--------REALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHHHH--T--------T-HHHHHHHHHHHCTTCHHHHH--------HHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHHHc-CC--------CCHHHHHHHHHHHHHCCChHHH--------HHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 88888888 77 5566777777777777776654 0111111110000110 11566777789999
Q ss_pred HHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhH
Q 039282 295 ERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSG 373 (476)
Q Consensus 295 e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ 373 (476)
++|..+|++++...| ++.+...|+...... |+.++| ..
T Consensus 231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~--------------------g~~~~A---------------------~~ 269 (280)
T PF13429_consen 231 EEALEYLEKALKLNPDDPLWLLAYADALEQA--------------------GRKDEA---------------------LR 269 (280)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc--------------------cccccc---------------------cc
Confidence 999999999999999 889999999999988 899999 77
Q ss_pred HHHHHHHHh
Q 039282 374 VFEKGINYY 382 (476)
Q Consensus 374 ifera~~~~ 382 (476)
++.+++...
T Consensus 270 ~~~~~~~~l 278 (280)
T PF13429_consen 270 LRRQALRLL 278 (280)
T ss_dssp ---------
T ss_pred ccccccccc
Confidence 777776543
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=7.2e-16 Score=168.32 Aligned_cols=322 Identities=9% Similarity=-0.034 Sum_probs=241.9
Q ss_pred CCChHHhhHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 039282 31 SVDPTELYDYR---LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK 107 (476)
Q Consensus 31 i~d~eel~e~~---~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~ 107 (476)
+.|+-.+..+. ..|...|++++..+|.....+..+|.++...|+++.|..+|++++..+|.++.++..++.++...|
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 45555554433 578899999998889999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhH----------
Q 039282 108 FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQV---------- 176 (476)
Q Consensus 108 ~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~---------- 176 (476)
+++.|...+++++...|.+.. |..++.++...|+.+.|...|++++...|++ .++..++..+...|..
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 999999999999999999999 9999999999999999999999999999986 5666666655443332
Q ss_pred ------------------------------------HHHHHHHHHHHHhCCCCHHHH-------HHHHHHHHHcCCHHHH
Q 039282 177 ------------------------------------ELARQVFERLVQCHPNVVSSW-------IKYAKFEMRRGEIDRA 213 (476)
Q Consensus 177 ------------------------------------~~A~~~~~r~l~~~p~~~~~w-------~~~a~~~~~~g~~~~A 213 (476)
++|+..|++++...|.++... +.....+...|+++.|
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA 256 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDV 256 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHH
Confidence 456666667775544333221 1212233566899999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHH----HHHHHhccCCCCchhhHHH
Q 039282 214 RNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLI----EDAIVGKGKAPKDKAYIHF 287 (476)
Q Consensus 214 ~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~----~~~i~~~~~~p~~~~~~~~ 287 (476)
+..|++++.. .+ +.......+ .+..+...|++++| .|++.+...+.. ..... .++..
T Consensus 257 ~~~~~~ll~~-~~-----~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~---------~L~~a 319 (765)
T PRK10049 257 ISEYQRLKAE-GQ-----IIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELA---------DLFYS 319 (765)
T ss_pred HHHHHHhhcc-CC-----CCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHH---------HHHHH
Confidence 9999998877 43 111333333 47778888999988 455433221110 00000 23334
Q ss_pred HHHcCCHHHHHHHHHHHHhccC-C---------------HHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhh
Q 039282 288 EKSQGERERRRALYERLVERTK-H---------------LKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGAR 351 (476)
Q Consensus 288 ~~~~g~~e~Ar~l~e~~l~~~~-~---------------~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (476)
+...|++++|+.++++++...| . ..+...++.+.... |++++|
T Consensus 320 ~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~--------------------g~~~eA- 378 (765)
T PRK10049 320 LLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS--------------------NDLPQA- 378 (765)
T ss_pred HHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc--------------------CCHHHH-
Confidence 5688999999999999998765 1 12444555555555 889999
Q ss_pred hhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhh
Q 039282 352 RSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAM 419 (476)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~ 419 (476)
..+|++++...|.+ ..++..........|+.+.+..+.++
T Consensus 379 --------------------~~~l~~al~~~P~n--------~~l~~~lA~l~~~~g~~~~A~~~l~~ 418 (765)
T PRK10049 379 --------------------EMRARELAYNAPGN--------QGLRIDYASVLQARGWPRAAENELKK 418 (765)
T ss_pred --------------------HHHHHHHHHhCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 99999999887766 46888888888899997777666654
No 25
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=99.78 E-value=7.8e-17 Score=171.61 Aligned_cols=233 Identities=23% Similarity=0.428 Sum_probs=208.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hcCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 44 KRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALE-EDCRN----HTLWCKYAEFEMINKFINHARNVWDR 118 (476)
Q Consensus 44 a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~-~~p~~----~~lw~~y~~~e~~~~~~~~A~~~~~r 118 (476)
-...|++.++.+|++.-.|++|..+.++.++.+.||++++|||. ++++- ..+|..|..++...|.-+....+|+|
T Consensus 1443 saeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred CHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999995 66653 58999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--CHH
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELARQVFERLVQCHPN--VVS 195 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~-~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~--~~~ 195 (476)
|.+.+. .-.++..+..++...+.++.|-++|+.+++.... ..+|..|+.++.++++-+.|+.++.|+++.-|. +.+
T Consensus 1523 Acqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1523 ACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred HHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 999865 3678889999999999999999999999998874 489999999999999999999999999999998 889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhc
Q 039282 196 SWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGK 275 (476)
Q Consensus 196 ~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~ 275 (476)
+....|.++.++|+.+++|.+|+-.+.. .| ....+|..|++.
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~a-yP--------KRtDlW~VYid~----------------------------- 1643 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSA-YP--------KRTDLWSVYIDM----------------------------- 1643 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhh-Cc--------cchhHHHHHHHH-----------------------------
Confidence 9999999999999999999999999999 88 566788877754
Q ss_pred cCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC---CH-HHHHHHHHHHhhcCCC
Q 039282 276 GKAPKDKAYIHFEKSQGERERRRALYERLVERTK---HL-KVWISYAKFEASALSK 327 (476)
Q Consensus 276 ~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~---~~-~vw~~~a~~e~~~~~~ 327 (476)
+.+.|+.+-+|.+|+|++...- .. .++..|..||.++|+.
T Consensus 1644 ------------eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1644 ------------EIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred ------------HHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence 3467888899999999998863 23 3777888999998664
No 26
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.78 E-value=7.9e-16 Score=153.61 Aligned_cols=319 Identities=17% Similarity=0.245 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI-NKFINHARNVWDRAV 120 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~-~~~~~~A~~~~~ral 120 (476)
..+|..|...|...|...+.|.+||..+...|..+.+..+|+|++.--|.++.+|+.|..+... .|+.+..+..|++|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999999999999999999997654 678899999999999
Q ss_pred HhCCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHH-----------------------
Q 039282 121 AVLPH---VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ--QAWLSYIKFELR----------------------- 172 (476)
Q Consensus 121 ~~~p~---~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~--~~w~~~~~~~~~----------------------- 172 (476)
..... +..+|-.|+.++..+++......+|+|.++..-.. ..+..|..+...
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~ 221 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERS 221 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhh
Confidence 98765 78999999999999999999999999988652110 111111111100
Q ss_pred ----------------------hhhHHHHHHHHHHH------------------------HH-----hCC---CCHHHHH
Q 039282 173 ----------------------YEQVELARQVFERL------------------------VQ-----CHP---NVVSSWI 198 (476)
Q Consensus 173 ----------------------~g~~~~A~~~~~r~------------------------l~-----~~p---~~~~~w~ 198 (476)
.+..+.+.....+. +. ..| .+...|.
T Consensus 222 ~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~ 301 (577)
T KOG1258|consen 222 KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWR 301 (577)
T ss_pred hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHH
Confidence 00112222121111 11 111 1346788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHH------hCChHHHHHHH
Q 039282 199 KYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKE------FGDWVLIEDAI 272 (476)
Q Consensus 199 ~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~------~g~~~~~~~~i 272 (476)
.+..+....|+++.+.-+|++|+-. |. ....+|..|+.|....|..+-|...-+ ....+.+. +
T Consensus 302 ~yLdf~i~~g~~~~~~~l~ercli~-cA--------~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~-L- 370 (577)
T KOG1258|consen 302 YYLDFEITLGDFSRVFILFERCLIP-CA--------LYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH-L- 370 (577)
T ss_pred HHhhhhhhcccHHHHHHHHHHHHhH-Hh--------hhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH-H-
Confidence 8888888888888888888888887 76 677888888888888877666521111 11122211 1
Q ss_pred HhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCC---CC--------Cc----h
Q 039282 273 VGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGN---PD--------LS----E 336 (476)
Q Consensus 273 ~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~---~~--------~~----~ 336 (476)
.++.|+...|+++.|+.++++.....| .+.+=+.++.++...++.+... +. .. +
T Consensus 371 ----------~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~ 440 (577)
T KOG1258|consen 371 ----------LEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILE 440 (577)
T ss_pred ----------HHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhH
Confidence 456677777788888888888777766 7766666677666665432100 00 00 0
Q ss_pred h------HHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCH
Q 039282 337 A------DLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGEL 410 (476)
Q Consensus 337 ~------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~ 410 (476)
- ...-.-.++.+.| +.++..|+...++. ..++.....|+...+..
T Consensus 441 ~l~~~~~r~~~~i~~d~~~a---------------------~~~l~~~~~~~~~~--------k~~~~~~~~~~~~~~~~ 491 (577)
T KOG1258|consen 441 KLYVKFARLRYKIREDADLA---------------------RIILLEANDILPDC--------KVLYLELIRFELIQPSG 491 (577)
T ss_pred HHHHHHHHHHHHHhcCHHHH---------------------HHHHHHhhhcCCcc--------HHHHHHHHHHHHhCCcc
Confidence 0 0001112334444 99999999988877 67999999999998854
No 27
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.77 E-value=5.2e-15 Score=163.73 Aligned_cols=258 Identities=14% Similarity=0.076 Sum_probs=124.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDC-RNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH-VDQLWYKYIR 135 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p-~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~-~~~lw~~~~~ 135 (476)
+...|..+...+...|+++.|+.+|+.+..... .+...|..++..+.+.|+++.|..+|+++...... +...|..++.
T Consensus 436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~ 515 (1060)
T PLN03218 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344555555555555555555555555544321 23445555555555555555555555555543211 3445555555
Q ss_pred HHHHhCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHcCC
Q 039282 136 MEEIAGNVAAARLIFDRWMHW--TPDQQAWLSYIKFELRYEQVELARQVFERLVQ----CHPNVVSSWIKYAKFEMRRGE 209 (476)
Q Consensus 136 ~~~~~g~~~~A~~~~eral~~--~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~----~~p~~~~~w~~~a~~~~~~g~ 209 (476)
.+.+.|+++.|..+|.++... .|+...|..++..+.+.|++++|..+|+++.. ..|+ ..+|..++..+.+.|+
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCC
Confidence 555555555555555554332 34444555555555555555555555555543 1233 4455555555555555
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHh--CChH-------------------
Q 039282 210 IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEF--GDWV------------------- 266 (476)
Q Consensus 210 ~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~--g~~~------------------- 266 (476)
+++|..+|+.+.+..++ .....|...+..+.+.|+++.| .|++.. |..+
T Consensus 595 ldeA~elf~~M~e~gi~--------p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIK--------GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HHHHHHHHHHHHHcCCC--------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Confidence 55555555555544111 2233444444444455555544 111110 0000
Q ss_pred ---HHHHHHHhccCCCCch---hhHHHHHHcCCHHHHHHHHHHHHhc--cCCHHHHHHHHHHHhhc
Q 039282 267 ---LIEDAIVGKGKAPKDK---AYIHFEKSQGERERRRALYERLVER--TKHLKVWISYAKFEASA 324 (476)
Q Consensus 267 ---~~~~~i~~~~~~p~~~---~~~~~~~~~g~~e~Ar~l~e~~l~~--~~~~~vw~~~a~~e~~~ 324 (476)
.+-..+...|..|... .++..+.+.|++++|..+|+++... .|+...|..++..+...
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~ 732 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG 732 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 0000011123333322 4555666677777777777766543 34666677777666665
No 28
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.77 E-value=4.3e-15 Score=144.61 Aligned_cols=333 Identities=19% Similarity=0.307 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK-FINHARNVWDRAV 120 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~-~~~~A~~~~~ral 120 (476)
.+...+|..++.+.+.++..|..|+.+..+.+.+.+.-.+|..+|..+|+++.+|+-.+..+..-+ +++.||.+|.++|
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 466788999999999999999999999999999999999999999999999999999999887655 4999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHh-----------C----CH----H---HHHH-------------------HHH--------
Q 039282 121 AVLPHVDQLWYKYIRMEEIA-----------G----NV----A---AARL-------------------IFD-------- 151 (476)
Q Consensus 121 ~~~p~~~~lw~~~~~~~~~~-----------g----~~----~---~A~~-------------------~~e-------- 151 (476)
..+|+++.+|..|..++... | +. + .+-. +.+
T Consensus 168 R~npdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel 247 (568)
T KOG2396|consen 168 RFNPDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKEL 247 (568)
T ss_pred hcCCCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHH
Confidence 99999999999999987652 1 00 0 0000 000
Q ss_pred ------HHHhcCCCH-HHHHHHHHHHHH----h---------------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039282 152 ------RWMHWTPDQ-QAWLSYIKFELR----Y---------------EQVELARQVFERLVQCHPNVVSSWIKYAKFEM 205 (476)
Q Consensus 152 ------ral~~~P~~-~~w~~~~~~~~~----~---------------g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~ 205 (476)
-.....|.+ ..|...+.-+.+ . ..-+...++|+.++..-|+ ...|..|+.+..
T Consensus 248 ~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~l~t-~sm~e~YI~~~l 326 (568)
T KOG2396|consen 248 QKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKTLPT-ESMWECYITFCL 326 (568)
T ss_pred HHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHHhhH-HHHHHHHHHHHH
Confidence 000112222 234433322211 0 1345667889999988888 778888877765
Q ss_pred Hc-----C-CHHHHHHHHHHHHHhhcCCC--------------------------CCCChhhHHHHHHHHHHHHHHc-cc
Q 039282 206 RR-----G-EIDRARNVYERALEKKLADG--------------------------DGDDDEGAEQLFVAFAEFEERY-KE 252 (476)
Q Consensus 206 ~~-----g-~~~~A~~~~e~al~~~~p~~--------------------------~~~~~~~~~~l~~~~a~~e~~~-~~ 252 (476)
.. | .+.....+|+.+...+.... ..+.-.++..+|..+...+... .+
T Consensus 327 E~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD 406 (568)
T KOG2396|consen 327 ERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSD 406 (568)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcch
Confidence 43 2 45566677776665411100 0000012233444444443311 11
Q ss_pred hh----HH--HHHHHhCCh---------------HHHHHHHHhccC---CCC----chhhHHHHHHcCCHHHHHHHHHHH
Q 039282 253 SE----SE--ALRKEFGDW---------------VLIEDAIVGKGK---APK----DKAYIHFEKSQGERERRRALYERL 304 (476)
Q Consensus 253 ~e----~A--~~ek~~g~~---------------~~~~~~i~~~~~---~p~----~~~~~~~~~~~g~~e~Ar~l~e~~ 304 (476)
++ .. .+.+..++. ..+..+|.+.-. -|. ...|.+++.+.|.+..||.+|.++
T Consensus 407 ~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l 486 (568)
T KOG2396|consen 407 FQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSL 486 (568)
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHH
Confidence 11 10 112222211 111222221100 011 117899999999999999999999
Q ss_pred HhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhh
Q 039282 305 VERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYK 383 (476)
Q Consensus 305 l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~ 383 (476)
....| +..++..+++||.++.. -+...+ |..|++|+..|.
T Consensus 487 ~~lpp~sl~l~r~miq~e~~~~s------------------c~l~~~---------------------r~~yd~a~~~fg 527 (568)
T KOG2396|consen 487 QELPPFSLDLFRKMIQFEKEQES------------------CNLANI---------------------REYYDRALREFG 527 (568)
T ss_pred HhCCCccHHHHHHHHHHHhhHhh------------------cCchHH---------------------HHHHHHHHHHhC
Confidence 99998 89999999999998722 346777 999999999998
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCCh
Q 039282 384 TSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPK 422 (476)
Q Consensus 384 ~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 422 (476)
.. ..||-.|..+|..+|..+.+.-|..|.-+
T Consensus 528 ~d--------~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 528 AD--------SDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred CC--------hHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 44 57999999999999999999888876543
No 29
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.77 E-value=8e-16 Score=168.99 Aligned_cols=260 Identities=12% Similarity=0.012 Sum_probs=190.5
Q ss_pred HHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPG--DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~--~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral 120 (476)
.+...+.+++..+|. +..+|..+|.++.. ++...|+..|.+++...|.+.. .+.++......|+++.|...|++++
T Consensus 459 ~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~-~L~lA~al~~~Gr~eeAi~~~rka~ 536 (987)
T PRK09782 459 DNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQ-HRAVAYQAYQVEDYATALAAWQKIS 536 (987)
T ss_pred hhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHH-HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 345556677777787 99999999999987 7888999999999999997653 5556667778999999999999998
Q ss_pred HhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 039282 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK 199 (476)
Q Consensus 121 ~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~ 199 (476)
...|. +..|..++.++...|+++.|...|.+++...|.. .....++....+.|+++.|...|++++...|+ +..|..
T Consensus 537 ~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~ 614 (987)
T PRK09782 537 LHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVA 614 (987)
T ss_pred ccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHH
Confidence 87665 5668889999999999999999999999999876 23333333334559999999999999999997 999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccC
Q 039282 200 YAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGK 277 (476)
Q Consensus 200 ~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~ 277 (476)
++.++.+.|++++|...|++++.. .| +...++..++.++...|+++.| .|++.....+....+..
T Consensus 615 LA~~l~~lG~~deA~~~l~~AL~l-~P--------d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~---- 681 (987)
T PRK09782 615 RATIYRQRHNVPAAVSDLRAALEL-EP--------NNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIR---- 681 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH----
Confidence 999999999999999999999999 88 5566777777666655555555 23332222111111111
Q ss_pred CCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 278 APKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 278 ~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
.++..+...|+++.|+..|++++...| ...+-..++.++...
T Consensus 682 -----nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~ 724 (987)
T PRK09782 682 -----QLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQR 724 (987)
T ss_pred -----HHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHH
Confidence 334444455555555555555555555 344444444444443
No 30
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.76 E-value=1.2e-15 Score=167.63 Aligned_cols=248 Identities=13% Similarity=0.021 Sum_probs=212.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|.+++...|.+. ..+.++..+...|+++.|+..|++++...|. ...|..++.+....|+++.|...|++++.
T Consensus 493 ~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~ 570 (987)
T PRK09782 493 GVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQ 570 (987)
T ss_pred HHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 368888999999999764 3666677778899999999999998877665 45688999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYA 201 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a 201 (476)
..|....+...++......|+++.|...|++++...|+...|..++.++.+.|++++|...|++++...|+++.++..++
T Consensus 571 l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 571 RGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred cCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99988777776666666679999999999999999999899999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCC
Q 039282 202 KFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAP 279 (476)
Q Consensus 202 ~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p 279 (476)
.++...|++++|+.+|+++++. .| ....++...+..+...|+++.| .|++.+...+..-.+..
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l-~P--------~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~------ 715 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKG-LP--------DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITP------ 715 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhh------
Confidence 9999999999999999999999 88 6778999999999999999998 45555443332222221
Q ss_pred CchhhHHHHHHcCCHHHHHHHHHHHHhccC
Q 039282 280 KDKAYIHFEKSQGERERRRALYERLVERTK 309 (476)
Q Consensus 280 ~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~ 309 (476)
.++.+.....++.+|.+.|.+....++
T Consensus 716 ---~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 716 ---LTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred ---hhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 556677777788888888888887777
No 31
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=5.9e-16 Score=163.07 Aligned_cols=247 Identities=13% Similarity=0.053 Sum_probs=191.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGS---------QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA 112 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~---------~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A 112 (476)
..|...|++++..+|.+...|..+|.++.. .+++++|...+++|+.++|+++.+|..++.++...|+++.|
T Consensus 278 ~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A 357 (553)
T PRK12370 278 QQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVG 357 (553)
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHH
Confidence 488899999999999999999999887653 24589999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-
Q 039282 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ-AWLSYIKFELRYEQVELARQVFERLVQCH- 190 (476)
Q Consensus 113 ~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~-~w~~~~~~~~~~g~~~~A~~~~~r~l~~~- 190 (476)
...|++++.+.|+++..|+.++.++...|++++|...|+++++.+|.+. .+...+..+...|++++|...+++++...
T Consensus 358 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~ 437 (553)
T PRK12370 358 SLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL 437 (553)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999863 33344555667899999999999999875
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHH
Q 039282 191 PNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIED 270 (476)
Q Consensus 191 p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~ 270 (476)
|+++..+..++.++...|++++|+..+.+.... .| .....+...+..+...|+-..+.+++.+..
T Consensus 438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~--------~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~------ 502 (553)
T PRK12370 438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EI--------TGLIAVNLLYAEYCQNSERALPTIREFLES------ 502 (553)
T ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cc--------hhHHHHHHHHHHHhccHHHHHHHHHHHHHH------
Confidence 777888999999999999999999999998776 55 333344444445455554222222221110
Q ss_pred HHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhc
Q 039282 271 AIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVER 307 (476)
Q Consensus 271 ~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~ 307 (476)
+......+. .+..++.-.|+.+.+.-+ .++.+.
T Consensus 503 -~~~~~~~~~--~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 503 -EQRIDNNPG--LLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -hhHhhcCch--HHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 000011111 344556667777777666 555443
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.76 E-value=2.7e-18 Score=165.66 Aligned_cols=246 Identities=15% Similarity=0.173 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRV--PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRA 119 (476)
Q Consensus 42 ~~a~~~~e~~l~~~--p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ra 119 (476)
.+|.+.+.+.+... |.+...|..+|.+....++++.|+..|++++..++.++.....++.+ ...+++..|..++.++
T Consensus 25 ~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~ 103 (280)
T PF13429_consen 25 EKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKA 103 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccc
Confidence 47888886665554 88899999999999999999999999999999988888888888888 7888999999999988
Q ss_pred HHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--C-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Q 039282 120 VAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT--P-DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS 196 (476)
Q Consensus 120 l~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~--P-~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~ 196 (476)
....+ ++..|..++.++...++++.+..+++++.... | +...|..++.++.+.|+.++|..+|++++...|+++.+
T Consensus 104 ~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~ 182 (280)
T PF13429_consen 104 YERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA 182 (280)
T ss_dssp ---------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH
T ss_pred ccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH
Confidence 87665 47888888888888999999999998877544 2 34788999999999999999999999999999998999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHh
Q 039282 197 WIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVG 274 (476)
Q Consensus 197 w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~ 274 (476)
+..++.++...|+.++++.++...... .| .++.+|..++..+...|+++.| .|++.....+.-..++.
T Consensus 183 ~~~l~~~li~~~~~~~~~~~l~~~~~~-~~--------~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~- 252 (280)
T PF13429_consen 183 RNALAWLLIDMGDYDEAREALKRLLKA-AP--------DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLL- 252 (280)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHH--H--------TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHH-
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHH-Cc--------CHHHHHHHHHHHhcccccccccccccccccccccccccccc-
Confidence 999999999999999988888888877 55 4445788888888889998888 45555442222222222
Q ss_pred ccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhc
Q 039282 275 KGKAPKDKAYIHFEKSQGERERRRALYERLVER 307 (476)
Q Consensus 275 ~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~ 307 (476)
.|++.+...|+.++|..++.+++..
T Consensus 253 --------~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 253 --------AYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp --------HHHHHHT------------------
T ss_pred --------ccccccccccccccccccccccccc
Confidence 7889999999999999999988754
No 33
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.75 E-value=1.9e-15 Score=144.89 Aligned_cols=341 Identities=18% Similarity=0.256 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---------HHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKF---------INHA 112 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~---------~~~A 112 (476)
..-|+.||+.+.-.|--..+|..|..-++..+|+.....+|.|+|... -+..+|..|.+.-.+-++ +-+|
T Consensus 59 ~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~a 137 (660)
T COG5107 59 DAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEA 137 (660)
T ss_pred HHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHH
Confidence 466777888888888888888888888888888888888888887533 347888888876655432 2223
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHhh-------
Q 039282 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIA---------GNVAAARLIFDRWMHWTPDQ--QAWLSYIKFELRYE------- 174 (476)
Q Consensus 113 ~~~~~ral~~~p~~~~lw~~~~~~~~~~---------g~~~~A~~~~eral~~~P~~--~~w~~~~~~~~~~g------- 174 (476)
-...-.+.-..|.+..+|..|+.+.+.- ..++..|..|.|++...-++ .+|..|-.|+...+
T Consensus 138 yefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKf 217 (660)
T COG5107 138 YEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLWKDYENFELELNKITARKF 217 (660)
T ss_pred HHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233344577788888888876542 34678888999998764443 78999998887654
Q ss_pred ------hHHHHHHHHHHHHHh-------CC-----------CCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHh
Q 039282 175 ------QVELARQVFERLVQC-------HP-----------NVVSSWIKYAKFEMRRG-------EIDRARNVYERALEK 223 (476)
Q Consensus 175 ------~~~~A~~~~~r~l~~-------~p-----------~~~~~w~~~a~~~~~~g-------~~~~A~~~~e~al~~ 223 (476)
.+-.|+..|+....+ +| .....|++|++++...| ..++.--+|+.++..
T Consensus 218 vge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y 297 (660)
T COG5107 218 VGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY 297 (660)
T ss_pred hcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH
Confidence 356667777665532 11 12345999999998764 235677788999998
Q ss_pred hcCCCCCCChhhHHHHHHHHHHHHHHccchhHHH-------------------HHHHhCChHHHHH----HHHh---c--
Q 039282 224 KLADGDGDDDEGAEQLFVAFAEFEERYKESESEA-------------------LRKEFGDWVLIED----AIVG---K-- 275 (476)
Q Consensus 224 ~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~-------------------~ek~~g~~~~~~~----~i~~---~-- 275 (476)
++ -.+.+|..|..+....++-++|. +...-.+...+.. .+.. +
T Consensus 298 -~~--------~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys 368 (660)
T COG5107 298 -FY--------YAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYS 368 (660)
T ss_pred -hh--------hhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHh
Confidence 88 78899999999988887776660 1111111111111 1100 0
Q ss_pred --------cC--CCCc-h---------------hhHHHHHHcCCHHHHHHHHHHHHhcc-CCHHHHHHHHHHHhhcCCCC
Q 039282 276 --------GK--APKD-K---------------AYIHFEKSQGERERRRALYERLVERT-KHLKVWISYAKFEASALSKD 328 (476)
Q Consensus 276 --------~~--~p~~-~---------------~~~~~~~~~g~~e~Ar~l~e~~l~~~-~~~~vw~~~a~~e~~~~~~~ 328 (476)
+. .|+. + .++....+....+.||.+|-++-+.. -..+|++.-|.+|..+
T Consensus 369 ~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~---- 444 (660)
T COG5107 369 MGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA---- 444 (660)
T ss_pred hhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh----
Confidence 11 1110 0 35566667778899999999997765 2334555444444443
Q ss_pred CCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhh-----------------hhccCchhHHHHHHHHHhhhcCCCChH
Q 039282 329 GGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATC-----------------LISSLSSSGVFEKGINYYKTSAPEMME 391 (476)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~r~ifera~~~~~~~~~~~~~ 391 (476)
.+++.-| -+||+..+.. ..+..++|++|+.++....+. .+
T Consensus 445 ---------------~~d~~ta----~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~--q~-- 501 (660)
T COG5107 445 ---------------TGDRATA----YNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKT--QL-- 501 (660)
T ss_pred ---------------cCCcchH----HHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh--hh--
Confidence 1444455 6666665542 223699999999998877655 33
Q ss_pred HHHHHHHHHHHHHHhcCCHhhHHHHHhhCC
Q 039282 392 ERVMLLEEWLNMERSFGELGDVNLVQAMLP 421 (476)
Q Consensus 392 ~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p 421 (476)
..+|..|+++|..+|+...+-.+.+|+.
T Consensus 502 --k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 502 --KRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred --hHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 5699999999999999977766666643
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.75 E-value=1.9e-14 Score=148.72 Aligned_cols=319 Identities=13% Similarity=0.122 Sum_probs=240.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|..++..+|+++|.++..|..+|.++.++|+.+++...+=-|-.++|.+..+|..++++...+|+++.|+-+|.||++
T Consensus 156 eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~ 235 (895)
T KOG2076|consen 156 EEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQ 235 (895)
T ss_pred HHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--C
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ------QAWLSYIKFELRYEQVELARQVFERLVQCHPN--V 193 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~--~ 193 (476)
..|.+.++......++...|+...|...|.+++..+|.. +.-..++..+...++-+.|.+.++.++..+.+ .
T Consensus 236 ~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~ 315 (895)
T KOG2076|consen 236 ANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEAS 315 (895)
T ss_pred cCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999999943 33445566667777779999999999985443 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh---------------------cCCCCCCChhhHHHHHHHHHHHHHHccc
Q 039282 194 VSSWIKYAKFEMRRGEIDRARNVYERALEKK---------------------LADGDGDDDEGAEQLFVAFAEFEERYKE 252 (476)
Q Consensus 194 ~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~---------------------~p~~~~~~~~~~~~l~~~~a~~e~~~~~ 252 (476)
.+...-++.++.....++.|........... ++.+..-+. ....+....+-+....++
T Consensus 316 ~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~-~l~v~rl~icL~~L~~~e 394 (895)
T KOG2076|consen 316 LEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY-DLRVIRLMICLVHLKERE 394 (895)
T ss_pred ccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc-cchhHhHhhhhhcccccc
Confidence 4556677888888888888777666655510 110000000 011123333333333333
Q ss_pred hhHH--HHHHHhC-ChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC--CHHHHHHHHHHHhhcCCC
Q 039282 253 SESE--ALRKEFG-DWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK--HLKVWISYAKFEASALSK 327 (476)
Q Consensus 253 ~e~A--~~ek~~g-~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~--~~~vw~~~a~~e~~~~~~ 327 (476)
...+ +|--... ......+.+. ..++.+...|.+..|..+|..++...+ +.-||...+..+...
T Consensus 395 ~~e~ll~~l~~~n~~~~d~~dL~~---------d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l--- 462 (895)
T KOG2076|consen 395 LLEALLHFLVEDNVWVSDDVDLYL---------DLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL--- 462 (895)
T ss_pred hHHHHHHHHHHhcCChhhhHHHHH---------HHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH---
Confidence 3333 1111111 0111222222 566788899999999999999988876 677999999999998
Q ss_pred CCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhc
Q 039282 328 DGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSF 407 (476)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~ 407 (476)
+.++.| ...|++++...|.+ ...-..........
T Consensus 463 -----------------~e~e~A---------------------~e~y~kvl~~~p~~--------~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 463 -----------------GEYEEA---------------------IEFYEKVLILAPDN--------LDARITLASLYQQL 496 (895)
T ss_pred -----------------hhHHHH---------------------HHHHHHHHhcCCCc--------hhhhhhHHHHHHhc
Confidence 899999 99999999988776 33455556667788
Q ss_pred CCHhhHHHHHhh
Q 039282 408 GELGDVNLVQAM 419 (476)
Q Consensus 408 G~~~~~~~v~~~ 419 (476)
|+.+.+..+...
T Consensus 497 g~~EkalEtL~~ 508 (895)
T KOG2076|consen 497 GNHEKALETLEQ 508 (895)
T ss_pred CCHHHHHHHHhc
Confidence 998876666655
No 35
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.74 E-value=2.4e-14 Score=158.54 Aligned_cols=205 Identities=14% Similarity=0.028 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVP--GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRA 119 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p--~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ra 119 (476)
..|+.+|+.....+. .+.-.+..+...+...|.+..|..+|+.... | +...|..++..+.+.|+++.|..+|+++
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~a~~k~g~~e~A~~lf~~M 463 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMSVCASSQDIDGALRVLRLV 463 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 589999999988763 3444556677788889999999999988764 4 6788999999999999999999999999
Q ss_pred HHhCCC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCH
Q 039282 120 VAVLPH-VDQLWYKYIRMEEIAGNVAAARLIFDRWMHW--TPDQQAWLSYIKFELRYEQVELARQVFERLVQC--HPNVV 194 (476)
Q Consensus 120 l~~~p~-~~~lw~~~~~~~~~~g~~~~A~~~~eral~~--~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~--~p~~~ 194 (476)
...... +...|..++..+...|+++.|+.+|+++... .|+...|..++..+.+.|++++|..+|+.+... .|+ .
T Consensus 464 ~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD-~ 542 (1060)
T PLN03218 464 QEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD-R 542 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-H
Confidence 886432 5789999999999999999999999999875 467789999999999999999999999999764 466 8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 195 SSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 195 ~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
.+|..++..+.+.|++++|..+|+++.....+ ...+...|...+..+.+.|++++|
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g------i~PD~vTynaLI~ay~k~G~ldeA 598 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHP------IDPDHITVGALMKACANAGQVDRA 598 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC------CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 89999999999999999999999999863111 112355778888888899999998
No 36
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=3.5e-15 Score=143.79 Aligned_cols=246 Identities=16% Similarity=0.111 Sum_probs=179.9
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHH--------------------
Q 039282 42 LHKRNDFEDSIRR-VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYA-------------------- 100 (476)
Q Consensus 42 ~~a~~~~e~~l~~-~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~-------------------- 100 (476)
..++..++..+.. .|.+.-+-...|.+.-.+.|++.|.++|+..+..+|....-.-.|.
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~ 323 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS 323 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH
Confidence 3566667777776 7877777777777778888888888888888888886432211111
Q ss_pred --------------HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHH
Q 039282 101 --------------EFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLS 165 (476)
Q Consensus 101 --------------~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~ 165 (476)
..+...++-++|...|+|||+++|....+|..+|.-+....|...|+..|.+|++.+|.+ .+|..
T Consensus 324 ~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYG 403 (559)
T KOG1155|consen 324 NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYG 403 (559)
T ss_pred HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhh
Confidence 122222446888888999999999888889988888888888888899999999988876 88988
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHH
Q 039282 166 YIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAE 245 (476)
Q Consensus 166 ~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~ 245 (476)
+++.+.-.+-..=|.-.|++++..-|++..+|..+|..|.+.++.++|...|.+++.. .. .....+...++
T Consensus 404 LGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~-~d--------te~~~l~~Lak 474 (559)
T KOG1155|consen 404 LGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL-GD--------TEGSALVRLAK 474 (559)
T ss_pred hhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc-cc--------cchHHHHHHHH
Confidence 8888888888888888889999888988889999999998888999999999998886 22 34457778888
Q ss_pred HHHHccchhHH--HHHHHhCC-------hHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHH
Q 039282 246 FEERYKESESE--ALRKEFGD-------WVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLV 305 (476)
Q Consensus 246 ~e~~~~~~e~A--~~ek~~g~-------~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l 305 (476)
+++..++.++| .|+|.... .+....+.. .++.++.+.+++++|-..-.+++
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~---------fLA~~f~k~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARL---------FLAEYFKKMKDFDEASYYATLVL 534 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHH---------HHHHHHHhhcchHHHHHHHHHHh
Confidence 88888888877 34443221 111122222 45566666677666655555443
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2e-15 Score=145.50 Aligned_cols=217 Identities=18% Similarity=0.247 Sum_probs=184.1
Q ss_pred HhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH----------------------------------HHHhCCCHHHHHHH
Q 039282 36 ELYDYRLHKRNDFEDSIRRVPGDTAVWINYAK----------------------------------WEGSQNEFDRARSM 81 (476)
Q Consensus 36 el~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~----------------------------------~~~~~~~~~~A~~~ 81 (476)
..+++ +.|...||..++.+|...+-.-.|.+ .+.-.++-++|+..
T Consensus 274 ~~rDf-D~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~Y 352 (559)
T KOG1155|consen 274 NQRDF-DQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMY 352 (559)
T ss_pred hhhhH-HHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHH
Confidence 34444 48999999999999876443222222 22234567899999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-
Q 039282 82 WELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ- 160 (476)
Q Consensus 82 ~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~- 160 (476)
|.|||.+||....+|..+|.-++..+|...|...|++|+.++|.+-..|+.+|+++..++-..-|.-.|++++...|.+
T Consensus 353 FkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs 432 (559)
T KOG1155|consen 353 FKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS 432 (559)
T ss_pred HHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC-CCCCCChhhHHHH
Q 039282 161 QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA-DGDGDDDEGAEQL 239 (476)
Q Consensus 161 ~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p-~~~~~~~~~~~~l 239 (476)
.+|..+++.+.+.++.++|+..|.+++...-.+..++..+|+++.+.++.++|...|++.++. .. .+.. ++ .....
T Consensus 433 Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~-~~~eg~~-~~-~t~ka 509 (559)
T KOG1155|consen 433 RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV-SELEGEI-DD-ETIKA 509 (559)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHhhccc-ch-HHHHH
Confidence 899999999999999999999999999987777899999999999999999999999999985 21 0011 11 23344
Q ss_pred HHHHHHHHHHccchhHH
Q 039282 240 FVAFAEFEERYKESESE 256 (476)
Q Consensus 240 ~~~~a~~e~~~~~~e~A 256 (476)
....+.++.+.+++++|
T Consensus 510 ~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 510 RLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHHHHHhhcchHHH
Confidence 45588999999999888
No 38
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=5.1e-15 Score=153.86 Aligned_cols=288 Identities=14% Similarity=0.175 Sum_probs=188.0
Q ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGD-TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK----FINHARNVWD 117 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~-~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~----~~~~A~~~~~ 117 (476)
+|...|.+++..+|++ +-....+|++++..|+++.|..+|++.+...|++......+|.++...+ ..+.|.++..
T Consensus 325 kA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 325 KAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 5666666666666666 5556666666666666666666666666666666666666665555443 3456666666
Q ss_pred HHHHhCCCcHHHHHHHHHHHHH--------------------------------------hCCHHHHHHHHHHHHhc---
Q 039282 118 RAVAVLPHVDQLWYKYIRMEEI--------------------------------------AGNVAAARLIFDRWMHW--- 156 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~~~--------------------------------------~g~~~~A~~~~eral~~--- 156 (476)
+++...|.+...|..++++++. .|++..|...|.+++..
T Consensus 405 K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 405 KVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 6666666665566555555444 45666666666666655
Q ss_pred --CCCH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 039282 157 --TPDQ------QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADG 228 (476)
Q Consensus 157 --~P~~------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~ 228 (476)
+++. ..-..++.++...++++.|.+.|...+..||+..+.++.++.+....++...|...+..++.. ..
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~-- 561 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DS-- 561 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-cc--
Confidence 1111 135566667777778888888888888888888888888887777888888888888888877 44
Q ss_pred CCCChhhHHHHHHHHHHHHHHccchhHH------HHHHHhCChHH---------------------------HHHHHHh-
Q 039282 229 DGDDDEGAEQLFVAFAEFEERYKESESE------ALRKEFGDWVL---------------------------IEDAIVG- 274 (476)
Q Consensus 229 ~~~~~~~~~~l~~~~a~~e~~~~~~e~A------~~ek~~g~~~~---------------------------~~~~i~~- 274 (476)
.++..+..++.|+....++-.| ++.+..+..+. ++.++..
T Consensus 562 ------~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y 635 (1018)
T KOG2002|consen 562 ------SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLY 635 (1018)
T ss_pred ------CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 5566777777777666554433 22222221111 1111111
Q ss_pred ---ccCCCCch----hhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhh
Q 039282 275 ---KGKAPKDK----AYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQS 346 (476)
Q Consensus 275 ---~~~~p~~~----~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (476)
....|++. ..+-.+...|++..|+.+|.++.+... .+++|+++++.+... |+
T Consensus 636 ~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~--------------------~q 695 (1018)
T KOG2002|consen 636 GKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQ--------------------GQ 695 (1018)
T ss_pred HHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHH--------------------HH
Confidence 01223332 344566788999999999999988876 789999999999988 99
Q ss_pred HHhhhhhhhHHhHHHHh
Q 039282 347 IRGARRSHRKIYHQFAT 363 (476)
Q Consensus 347 ~~~A~~~~~~~~~~~~~ 363 (476)
+..| .++|+.++.
T Consensus 696 y~~A----IqmYe~~lk 708 (1018)
T KOG2002|consen 696 YRLA----IQMYENCLK 708 (1018)
T ss_pred HHHH----HHHHHHHHH
Confidence 9999 666666665
No 39
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.72 E-value=2.4e-15 Score=133.37 Aligned_cols=187 Identities=18% Similarity=0.191 Sum_probs=166.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEI 139 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~ 139 (476)
.+.+.+|.-|+++|++..|+.-+++||.++|++...|...+.++...|..+.|...|++|+.+.|++..+.+.|+.++..
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039282 140 AGNVAAARLIFDRWMHWTPD----QQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARN 215 (476)
Q Consensus 140 ~g~~~~A~~~~eral~~~P~----~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~ 215 (476)
.|.+++|-..|++++.. |. ...|.+.+-+..+.|+++.|+..|+|++..+|+.+.....++..+...|++-.|+.
T Consensus 116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 99999999999999875 33 27899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 216 VYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 216 ~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
.+++.... .+ -+...+|.. +++....|+-+.+
T Consensus 195 ~~~~~~~~-~~-------~~A~sL~L~-iriak~~gd~~~a 226 (250)
T COG3063 195 YLERYQQR-GG-------AQAESLLLG-IRIAKRLGDRAAA 226 (250)
T ss_pred HHHHHHhc-cc-------ccHHHHHHH-HHHHHHhccHHHH
Confidence 99999888 44 144445544 4455555554443
No 40
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.71 E-value=8.3e-15 Score=159.08 Aligned_cols=292 Identities=15% Similarity=0.121 Sum_probs=230.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV--LPHVDQLWYKYIR 135 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~--~p~~~~lw~~~~~ 135 (476)
+...+..++..+...|+++.|+.+|++.. +.++..|..++..+.+.|++++|..+|+++... .| +...+..++.
T Consensus 258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~ 333 (697)
T PLN03081 258 DTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIR 333 (697)
T ss_pred cceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Confidence 44566778888999999999999998753 567889999999999999999999999998764 34 3667888888
Q ss_pred HHHHhCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 039282 136 MEEIAGNVAAARLIFDRWMHWT--PDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRA 213 (476)
Q Consensus 136 ~~~~~g~~~~A~~~~eral~~~--P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A 213 (476)
.+...|.++.|..++..+++.. |+..++..++.++.+.|+++.|..+|+++.. |+ ..+|..++..+.++|+.++|
T Consensus 334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d-~~t~n~lI~~y~~~G~~~~A 410 (697)
T PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KN-LISWNALIAGYGNHGRGTKA 410 (697)
T ss_pred HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CC-eeeHHHHHHHHHHcCCHHHH
Confidence 8999999999999999988765 4457789999999999999999999998754 55 77899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCch---hhHHHH
Q 039282 214 RNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDK---AYIHFE 288 (476)
Q Consensus 214 ~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~---~~~~~~ 288 (476)
..+|++++..+.. .+...|......+...|.+++| .|+ .+....|..|... ..++.+
T Consensus 411 ~~lf~~M~~~g~~--------Pd~~T~~~ll~a~~~~g~~~~a~~~f~----------~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 411 VEMFERMIAEGVA--------PNHVTFLAVLSACRYSGLSEQGWEIFQ----------SMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred HHHHHHHHHhCCC--------CCHHHHHHHHHHHhcCCcHHHHHHHHH----------HHHHhcCCCCCccchHhHHHHH
Confidence 9999999876222 3455677777777788888887 232 2222234444322 566888
Q ss_pred HHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhcc
Q 039282 289 KSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISS 368 (476)
Q Consensus 289 ~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 368 (476)
.+.|++++|.++++++ ...|+..+|.+++...... |+++.|
T Consensus 473 ~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~--------------------g~~~~a------------------ 513 (697)
T PLN03081 473 GREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIH--------------------KNLELG------------------ 513 (697)
T ss_pred HhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHc--------------------CCcHHH------------------
Confidence 8999999999999875 2346788999999988888 889999
Q ss_pred CchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCChhh
Q 039282 369 LSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKL 424 (476)
Q Consensus 369 ~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~~ 424 (476)
+.++++.+...+.. ...+....+.....|..+.+.++.+.|..+-
T Consensus 514 ---~~~~~~l~~~~p~~--------~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 514 ---RLAAEKLYGMGPEK--------LNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred ---HHHHHHHhCCCCCC--------CcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999887655443 2245556677889999999999999887543
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.71 E-value=1.2e-14 Score=153.24 Aligned_cols=222 Identities=13% Similarity=0.032 Sum_probs=179.3
Q ss_pred hCCCCHHHHHHHHHHH--Hh---CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHH
Q 039282 54 RVPGDTAVWINYAKWE--GS---QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMIN---------KFINHARNVWDRA 119 (476)
Q Consensus 54 ~~p~~~~~w~~~a~~~--~~---~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~---------~~~~~A~~~~~ra 119 (476)
..|.+.+.|..|.+-. .. .+++++|+..|++|+..+|+++.+|..++.++... +++..|...++++
T Consensus 251 ~~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~A 330 (553)
T PRK12370 251 SELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKA 330 (553)
T ss_pred CCCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHH
Confidence 3567777666655432 22 24578999999999999999999999988876533 3489999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 039282 120 VAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI 198 (476)
Q Consensus 120 l~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~ 198 (476)
+...|+++..|..++.++...|+++.|...|++++..+|++ .+|..++..+...|++++|...|++++..+|.++..+.
T Consensus 331 l~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 331 TELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred HhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 99999999999999999999999999999999999999986 78999999999999999999999999999999877666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCC
Q 039282 199 KYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKA 278 (476)
Q Consensus 199 ~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~ 278 (476)
..+..+...|++++|...+++++.. .+ + .....+...+
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~-~~-----p--~~~~~~~~la---------------------------------- 448 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQ-HL-----Q--DNPILLSMQV---------------------------------- 448 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHh-cc-----c--cCHHHHHHHH----------------------------------
Confidence 6666677789999999999999987 53 1 2333333333
Q ss_pred CCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 279 PKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 279 p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
.++...|++++|+..+.+++...| +...+..++..+...
T Consensus 449 -------~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 449 -------MFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred -------HHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 333467888999999988877777 556666666666655
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=3e-16 Score=157.57 Aligned_cols=201 Identities=15% Similarity=0.183 Sum_probs=187.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 039282 47 DFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV 126 (476)
Q Consensus 47 ~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~ 126 (476)
+-+..+..+|+.++.|..+|.++.-+++.+.|++.|+||+.+||+..-++..+|.-...+..++.|...|+.||..+|++
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rh 488 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRH 488 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchh
Confidence 34567788999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039282 127 DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEM 205 (476)
Q Consensus 127 ~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~ 205 (476)
-.+|+.++.++.+++.++.|.-.|++|+..+|.+ .+...++.++.+.|..++|..+|++|+.++|.++-.-+.-+..+.
T Consensus 489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~ 568 (638)
T KOG1126|consen 489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF 568 (638)
T ss_pred hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence 9999999999999999999999999999999998 456667788999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 206 RRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 206 ~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
..+++++|...++...+. .| +...++...+..+.+.|..+.|
T Consensus 569 ~~~~~~eal~~LEeLk~~-vP--------~es~v~~llgki~k~~~~~~~A 610 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKEL-VP--------QESSVFALLGKIYKRLGNTDLA 610 (638)
T ss_pred hhcchHHHHHHHHHHHHh-Cc--------chHHHHHHHHHHHHHHccchHH
Confidence 999999999999999998 88 6667888899999988887777
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.70 E-value=7.2e-14 Score=141.97 Aligned_cols=283 Identities=12% Similarity=0.030 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH-TLWCKYAEFEMINKFINHARNVWDRAV 120 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~-~lw~~y~~~e~~~~~~~~A~~~~~ral 120 (476)
..|++.+.++.+..|...-.++..|.....+|+++.|...|.++++..|.+. .+...++.+.+..|+++.|+..+++.+
T Consensus 101 ~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~ 180 (409)
T TIGR00540 101 AKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLL 180 (409)
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5888999999999998888899999999999999999999999999999885 677778999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHH----HHHHHHHHhhhHHHHHHHHHHHHHhCC----
Q 039282 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWL----SYIKFELRYEQVELARQVFERLVQCHP---- 191 (476)
Q Consensus 121 ~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~----~~~~~~~~~g~~~~A~~~~~r~l~~~p---- 191 (476)
...|+++.++..++.++...|+++.|...+.+..+..+.+ .... ....-....+..+.+...+.++....|
T Consensus 181 ~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~ 260 (409)
T TIGR00540 181 EMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRR 260 (409)
T ss_pred HhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHh
Confidence 9999999999999999999999999999999999874332 1111 111111233444455567778887777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHH-HHHHHHHHHHHHccchhHH--HHHHHhCChHHH
Q 039282 192 NVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAE-QLFVAFAEFEERYKESESE--ALRKEFGDWVLI 268 (476)
Q Consensus 192 ~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~-~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~ 268 (476)
+++.++..++..+...|+.+.|..+++++++. .| +..... .++..+..+ ..++.+.+ .+++.....+.-
T Consensus 261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~-~p-----d~~~~~~~~l~~~~~l--~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKK-LG-----DDRAISLPLCLPIPRL--KPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-CC-----CcccchhHHHHHhhhc--CCCChHHHHHHHHHHHHhCCCC
Confidence 47999999999999999999999999999998 88 321110 133333332 12333332 222222111111
Q ss_pred H--HHHHhccCCCCchhhHHHHHHcCCHHHHHHHHH--HHHhccCCHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhH
Q 039282 269 E--DAIVGKGKAPKDKAYIHFEKSQGERERRRALYE--RLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKK 344 (476)
Q Consensus 269 ~--~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e--~~l~~~~~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
. .+.. .++.++.+.|++++|++.|+ .++...|++..+..++.+....
T Consensus 333 ~~~~ll~---------sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~-------------------- 383 (409)
T TIGR00540 333 PKCCINR---------ALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQA-------------------- 383 (409)
T ss_pred hhHHHHH---------HHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHc--------------------
Confidence 1 1111 67888899999999999999 5788889877788999999988
Q ss_pred hhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHh
Q 039282 345 QSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYY 382 (476)
Q Consensus 345 ~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~ 382 (476)
|+.+.| +.+|++++...
T Consensus 384 g~~~~A---------------------~~~~~~~l~~~ 400 (409)
T TIGR00540 384 GDKAEA---------------------AAMRQDSLGLM 400 (409)
T ss_pred CCHHHH---------------------HHHHHHHHHHH
Confidence 889999 99999987654
No 44
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.69 E-value=3.3e-14 Score=154.42 Aligned_cols=257 Identities=14% Similarity=0.093 Sum_probs=190.9
Q ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRV--PGDTAVWINYAKWEGSQNEFDRARSMWELALEE--DCRNHTLWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 42 ~~a~~~~e~~l~~~--p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~--~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
..|...|+...... +.+...+..+...+...++++.|+.++..+... .| ++..+..++.++.+.|+++.|+.+|+
T Consensus 104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~lf~ 182 (697)
T PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRVLLMHVKCGMLIDARRLFD 182 (697)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHhcCCCHHHHHHHHh
Confidence 57888888876643 346677888888888888888888888887753 34 57778888888888888888888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-------------------------------------CH
Q 039282 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-------------------------------------DQ 160 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P-------------------------------------~~ 160 (476)
++.. | +...|..++..+...|++++|..+|.+++...+ +.
T Consensus 183 ~m~~--~-~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~ 259 (697)
T PLN03081 183 EMPE--R-NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259 (697)
T ss_pred cCCC--C-CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccc
Confidence 8753 4 466788888888888888888888888765432 22
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHH
Q 039282 161 QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLF 240 (476)
Q Consensus 161 ~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~ 240 (476)
.++..++..+.+.|+++.|+.+|+++. +.+..+|..++..+.+.|+.++|..+|+++....+. .+...|
T Consensus 260 ~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~--------pd~~t~ 328 (697)
T PLN03081 260 FVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS--------IDQFTF 328 (697)
T ss_pred eeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--------CCHHHH
Confidence 345677888889999999999998863 335889999999999999999999999998776222 234456
Q ss_pred HHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCch---hhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHH
Q 039282 241 VAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDK---AYIHFEKSQGERERRRALYERLVERTKHLKVWISY 317 (476)
Q Consensus 241 ~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~---~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~ 317 (476)
......+.+.|.++.| ..+-..+...|..|... .+++.+.+.|+++.|+.+|+++.+ |+...|..+
T Consensus 329 ~~ll~a~~~~g~~~~a---------~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~l 397 (697)
T PLN03081 329 SIMIRIFSRLALLEHA---------KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNAL 397 (697)
T ss_pred HHHHHHHHhccchHHH---------HHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHH
Confidence 6666667777887777 11111222234333321 677888899999999999998754 566789998
Q ss_pred HHHHhhc
Q 039282 318 AKFEASA 324 (476)
Q Consensus 318 a~~e~~~ 324 (476)
+..+...
T Consensus 398 I~~y~~~ 404 (697)
T PLN03081 398 IAGYGNH 404 (697)
T ss_pred HHHHHHc
Confidence 8888887
No 45
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=2.9e-14 Score=138.35 Aligned_cols=236 Identities=12% Similarity=0.053 Sum_probs=176.5
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGD----TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~----~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
.-+...+.++|...|.+ ...|...|..+...|+.+.|+..|++++..+|+++.+|..++.++...|+++.|...|+
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 122 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFD 122 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35677788888755533 56699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Q 039282 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSW 197 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w 197 (476)
+++.+.|++...|...+.++...|+++.|...|++++..+|++.....+..+....+++++|...|.+.+...+. ..|
T Consensus 123 ~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~--~~~ 200 (296)
T PRK11189 123 SVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDK--EQW 200 (296)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCc--ccc
Confidence 999999999999999999999999999999999999999998643222233345677899999999887755432 334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccC
Q 039282 198 IKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGK 277 (476)
Q Consensus 198 ~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~ 277 (476)
. ++......|+...+ ..++.++.. +. ....+--.... +..
T Consensus 201 ~-~~~~~~~lg~~~~~-~~~~~~~~~-~~--------~~~~l~~~~~e-------------------------a~~---- 240 (296)
T PRK11189 201 G-WNIVEFYLGKISEE-TLMERLKAG-AT--------DNTELAERLCE-------------------------TYF---- 240 (296)
T ss_pred H-HHHHHHHccCCCHH-HHHHHHHhc-CC--------CcHHHHHHHHH-------------------------HHH----
Confidence 3 44555556666554 355555543 32 11111000000 000
Q ss_pred CCCchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 039282 278 APKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASA 324 (476)
Q Consensus 278 ~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~ 324 (476)
.++..+...|++++|+..|++++..+|+..+=..|+.+|...
T Consensus 241 -----~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~ 282 (296)
T PRK11189 241 -----YLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELAL 282 (296)
T ss_pred -----HHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 344566689999999999999999998555555566666544
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.69 E-value=1.7e-14 Score=133.64 Aligned_cols=190 Identities=15% Similarity=0.132 Sum_probs=166.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~ 137 (476)
....+..++..+...|++++|...|++++..+|.+..+|..++.++...|+++.|...|++++...|.+...|..++.++
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 36788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 039282 138 EIAGNVAAARLIFDRWMHWTPD---QQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRAR 214 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P~---~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~ 214 (476)
...|+++.|...|.+++...+. ...+..++..+...|+++.|...|.+++...|+++..+..++.++...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999875432 2678888888999999999999999999999998999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 215 NVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 215 ~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
..+++++.. .| .....+...+.+....|+.+.|
T Consensus 190 ~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 190 AYLERYQQT-YN--------QTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHHHHHHHh-CC--------CCHHHHHHHHHHHHHHhhHHHH
Confidence 999999988 66 3344555666777777776666
No 47
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.5e-15 Score=151.02 Aligned_cols=246 Identities=15% Similarity=0.146 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc--------------------------------
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEED-------------------------------- 89 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~-------------------------------- 89 (476)
..|...|++.-...++..=+...+|..+.+.+++++|.++|+.+-...
T Consensus 336 ~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~ 415 (638)
T KOG1126|consen 336 REALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLID 415 (638)
T ss_pred HHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 577778888544555545444577888888888888888877765544
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHH
Q 039282 90 --CRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSY 166 (476)
Q Consensus 90 --p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~ 166 (476)
|..|..|+..|.++.-+++.+.|...|+||++++|+..-.+...+.-......++.|...|..++..+|.+ .+|..+
T Consensus 416 ~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl 495 (638)
T KOG1126|consen 416 TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL 495 (638)
T ss_pred hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence 44578888888888888888888888888888888877777777777777778888888888888888876 888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHH
Q 039282 167 IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEF 246 (476)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~ 246 (476)
+-.+.++++++.|.-.|++|+..+|.+..+..-++.++.+.|..++|..+|++|+.. .| .+..--...+.+
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~--------kn~l~~~~~~~i 566 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DP--------KNPLCKYHRASI 566 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CC--------CCchhHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888887 66 344344455666
Q ss_pred HHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCch----hhHHHHHHcCCHHHHHHHHHHHHhccC
Q 039282 247 EERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDK----AYIHFEKSQGERERRRALYERLVERTK 309 (476)
Q Consensus 247 e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~----~~~~~~~~~g~~e~Ar~l~e~~l~~~~ 309 (476)
+...+.+++| .+|+. +.+.|... ..+..+.+.|+.+.|..-|.=|+...|
T Consensus 567 l~~~~~~~eal~~LEeL-------------k~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 567 LFSLGRYVEALQELEEL-------------KELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHhhcchHHHHHHHHHH-------------HHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 6666777766 22211 11223322 456777888999999999988888887
No 48
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.68 E-value=1.8e-14 Score=133.49 Aligned_cols=182 Identities=15% Similarity=0.164 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...|..++..+...|+++.|...|++++..+|.+..+|..++.++...|+++.|...|++++.
T Consensus 48 ~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 48 EVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hC--CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 039282 122 VL--PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI 198 (476)
Q Consensus 122 ~~--p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~ 198 (476)
.. |.....|..++.++...|+++.|...|.+++...|.. ..|..++.++...|++++|...+++++...|.++..+.
T Consensus 128 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 207 (234)
T TIGR02521 128 DPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLW 207 (234)
T ss_pred ccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 54 4567789999999999999999999999999999975 78889999999999999999999999999888889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 199 KYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 199 ~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
..+.++...|+.+.|+.+.+.+...
T Consensus 208 ~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 208 LGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999999999999998877654
No 49
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.67 E-value=1.3e-14 Score=128.67 Aligned_cols=184 Identities=17% Similarity=0.132 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|++.++++|+.+|+++..|..+|.++...|+.+.|.+.|++|+.++|++.++.++|+.+++.+|.+++|...|++|+.
T Consensus 52 ~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~ 131 (250)
T COG3063 52 AQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA 131 (250)
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hC--CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 039282 122 VL--PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI 198 (476)
Q Consensus 122 ~~--p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~ 198 (476)
.. |.....|-..+.+..+.|.++.|+..|+|++..+|+. ......+..+...|++..|+..+++.....+-..+.+.
T Consensus 132 ~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~ 211 (250)
T COG3063 132 DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLL 211 (250)
T ss_pred CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHH
Confidence 52 3467889999999999999999999999999999986 77889999999999999999999999998887788888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 199 KYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 199 ~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.-+.+....|+-+.+-..=...... +|
T Consensus 212 L~iriak~~gd~~~a~~Y~~qL~r~-fP 238 (250)
T COG3063 212 LGIRIAKRLGDRAAAQRYQAQLQRL-FP 238 (250)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh-CC
Confidence 8899999999998887766666666 88
No 50
>PLN03077 Protein ECB2; Provisional
Probab=99.67 E-value=8.3e-14 Score=154.81 Aligned_cols=239 Identities=11% Similarity=0.046 Sum_probs=136.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVL--PHVDQLWYKYIR 135 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~--p~~~~lw~~~~~ 135 (476)
+...+..++..+...|+++.|+.+|++.. ..++..|..++..+.+.|++++|..+|+++.... |+ ...+..++.
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd-~~t~~~ll~ 397 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME---TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD-EITIASVLS 397 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCC---CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCC-ceeHHHHHH
Confidence 44555555555555555555555555542 2344455555555555555556666555554332 33 333444444
Q ss_pred HHHHhCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 039282 136 MEEIAGNVAAARLIFDRWMHWT--PDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRA 213 (476)
Q Consensus 136 ~~~~~g~~~~A~~~~eral~~~--P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A 213 (476)
.+...|+++.|..+++.+++.. |+..++..++..+.+.|+++.|+.+|+++.. |+ ..+|..++..+.+.|+.++|
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d-~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE--KD-VISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC--CC-eeeHHHHHHHHHHCCCHHHH
Confidence 5555555555665555555443 2335566666666666666666666666432 32 55666666666666666666
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCch---hhHHHHHH
Q 039282 214 RNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDK---AYIHFEKS 290 (476)
Q Consensus 214 ~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~---~~~~~~~~ 290 (476)
..+|++++.. .+ .+...|......+.+.|..+.+ ..+...+...|+.+... .+++.+.+
T Consensus 475 ~~lf~~m~~~-~~--------pd~~t~~~lL~a~~~~g~l~~~---------~~i~~~~~~~g~~~~~~~~naLi~~y~k 536 (857)
T PLN03077 475 LIFFRQMLLT-LK--------PNSVTLIAALSACARIGALMCG---------KEIHAHVLRTGIGFDGFLPNALLDLYVR 536 (857)
T ss_pred HHHHHHHHhC-CC--------CCHhHHHHHHHHHhhhchHHHh---------HHHHHHHHHhCCCccceechHHHHHHHH
Confidence 6666666654 33 1222333333333344444433 11112222234433321 77889999
Q ss_pred cCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 039282 291 QGERERRRALYERLVERTKHLKVWISYAKFEASA 324 (476)
Q Consensus 291 ~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~ 324 (476)
+|+++.|..+|+.+ .++...|..++..+...
T Consensus 537 ~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~ 567 (857)
T PLN03077 537 CGRMNYAWNQFNSH---EKDVVSWNILLTGYVAH 567 (857)
T ss_pred cCCHHHHHHHHHhc---CCChhhHHHHHHHHHHc
Confidence 99999999999986 56888999999988888
No 51
>PLN03077 Protein ECB2; Provisional
Probab=99.65 E-value=1.4e-13 Score=153.11 Aligned_cols=289 Identities=12% Similarity=0.071 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEI 139 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~ 139 (476)
..+..++..+.+.|+++.|+.+|++... .++..|..++..+..+|+.++|..+|++++...+-+...+...+..+..
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhh
Confidence 3444444444444444444444444321 2333444444444444444444444444443322223334444444444
Q ss_pred hCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039282 140 AGNVAAARLIFDRWMHWT--PDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVY 217 (476)
Q Consensus 140 ~g~~~~A~~~~eral~~~--P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~ 217 (476)
.|+.+.++.++..+++.. |+..+...++.++.+.|+++.|..+|+.+ .|+ ..+|..++..+..+|+.++|..+|
T Consensus 502 ~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d-~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKD-VVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred hchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCC-hhhHHHHHHHHHHcCCHHHHHHHH
Confidence 444444444444444332 22234556778888999999999999886 454 889999999999999999999999
Q ss_pred HHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCch---hhHHHHHHcC
Q 039282 218 ERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDK---AYIHFEKSQG 292 (476)
Q Consensus 218 e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~---~~~~~~~~~g 292 (476)
+++++..+. .+...|......+...|.+++| .|+. +....|+.|... ..++.+.+.|
T Consensus 578 ~~M~~~g~~--------Pd~~T~~~ll~a~~~~g~v~ea~~~f~~----------M~~~~gi~P~~~~y~~lv~~l~r~G 639 (857)
T PLN03077 578 NRMVESGVN--------PDEVTFISLLCACSRSGMVTQGLEYFHS----------MEEKYSITPNLKHYACVVDLLGRAG 639 (857)
T ss_pred HHHHHcCCC--------CCcccHHHHHHHHhhcChHHHHHHHHHH----------HHHHhCCCCchHHHHHHHHHHHhCC
Confidence 999876222 2334555666667778888887 2322 111223444322 5668889999
Q ss_pred CHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchh
Q 039282 293 ERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSS 372 (476)
Q Consensus 293 ~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r 372 (476)
++++|.++++++ ...|++.+|.++......+ ++.+.+ .
T Consensus 640 ~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~--------------------~~~e~~---------------------e 677 (857)
T PLN03077 640 KLTEAYNFINKM-PITPDPAVWGALLNACRIH--------------------RHVELG---------------------E 677 (857)
T ss_pred CHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHc--------------------CChHHH---------------------H
Confidence 999999999987 3567899999999988776 788888 8
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCChh
Q 039282 373 GVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKK 423 (476)
Q Consensus 373 ~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~ 423 (476)
.+.++.++..|.+ ...+....+.+...|..+.+.+|.+.|..+
T Consensus 678 ~~a~~l~~l~p~~--------~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 678 LAAQHIFELDPNS--------VGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHhhCCCC--------cchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 8888887766554 223334445677899999999999888754
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=8.5e-14 Score=135.11 Aligned_cols=238 Identities=16% Similarity=0.150 Sum_probs=192.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEI 139 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~ 139 (476)
.....-|.+..-.|+.-.|..-|..++.++|.++.+++..+.+++...+.+.-...|..|..++|.++.+++..+++...
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL 406 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH
Confidence 45555566677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 140 AGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYE 218 (476)
Q Consensus 140 ~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e 218 (476)
+++++.|..-|+++++++|++ -.+...+..+.+.+.++.+...|+.+...+|+.++.+..++..+..+++++.|.+.|.
T Consensus 407 L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 999999999999999999997 4566677778899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHHHHHH-ccchhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHH
Q 039282 219 RALEKKLADGDGDDDEGAEQLFVAFAEFEER-YKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERE 295 (476)
Q Consensus 219 ~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~-~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e 295 (476)
.|++. -|+++.- ......++.-+-+..+ .+++.+| ...|....++.-+.+.. .++.++...|+++
T Consensus 487 ~ai~L-E~~~~~~--~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~---------tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 487 KAIEL-EPREHLI--IVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYE---------TLAQFELQRGKID 554 (606)
T ss_pred HHHhh-ccccccc--cccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHH---------HHHHHHHHHhhHH
Confidence 99998 6621000 0012222222222111 2555555 23333333333232222 6788999999999
Q ss_pred HHHHHHHHHHhccC
Q 039282 296 RRRALYERLVERTK 309 (476)
Q Consensus 296 ~Ar~l~e~~l~~~~ 309 (476)
+|+++|++++.+..
T Consensus 555 eAielFEksa~lAr 568 (606)
T KOG0547|consen 555 EAIELFEKSAQLAR 568 (606)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988765
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.8e-13 Score=135.20 Aligned_cols=276 Identities=14% Similarity=0.084 Sum_probs=230.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 039282 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRM 136 (476)
Q Consensus 57 ~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~ 136 (476)
.+.++...-+.-+...+++....++++..++.+|-+.+.....+..+...|+.+.--.+=.+.+...|+.+-.|+..|-+
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 45677778888888899999999999999999999998888888899999999998888899999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039282 137 EEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARN 215 (476)
Q Consensus 137 ~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~ 215 (476)
+...|++++||..|.++...+|.- ..|..|+..+.-.|+-++|...|.++-+..|+.....+-+|.-+.+.+++..|..
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 999999999999999999999986 8999999999999999999999999999999976667777778888999999999
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhc-cCCCCchhhHHHHHHcC
Q 039282 216 VYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGK-GKAPKDKAYIHFEKSQG 292 (476)
Q Consensus 216 ~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~-~~~p~~~~~~~~~~~~g 292 (476)
.|..|+.. +| .++.+....+.+-...+++.+| .|++... .+.++...+ -..|....++..+.+++
T Consensus 402 Ff~~A~ai-~P--------~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~---~ik~~~~e~~~w~p~~~NLGH~~Rkl~ 469 (611)
T KOG1173|consen 402 FFKQALAI-AP--------SDPLVLHELGVVAYTYEEYPEALKYFQKALE---VIKSVLNEKIFWEPTLNNLGHAYRKLN 469 (611)
T ss_pred HHHHHHhc-CC--------CcchhhhhhhheeehHhhhHHHHHHHHHHHH---HhhhccccccchhHHHHhHHHHHHHHh
Confidence 99999999 99 5555555556555566777777 5666551 111111111 01222337788899999
Q ss_pred CHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCch
Q 039282 293 ERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSS 371 (476)
Q Consensus 293 ~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 371 (476)
.++.|+..|+++|...| ++.+..+.+-.+.-. |+++.|
T Consensus 470 ~~~eAI~~~q~aL~l~~k~~~~~asig~iy~ll--------------------gnld~A--------------------- 508 (611)
T KOG1173|consen 470 KYEEAIDYYQKALLLSPKDASTHASIGYIYHLL--------------------GNLDKA--------------------- 508 (611)
T ss_pred hHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHh--------------------cChHHH---------------------
Confidence 99999999999999999 889999999888888 999999
Q ss_pred hHHHHHHHHHhhhc
Q 039282 372 SGVFEKGINYYKTS 385 (476)
Q Consensus 372 r~ifera~~~~~~~ 385 (476)
..-|.+|+..-+.+
T Consensus 509 id~fhKaL~l~p~n 522 (611)
T KOG1173|consen 509 IDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHhcCCcc
Confidence 88888888765544
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.64 E-value=4.8e-13 Score=139.41 Aligned_cols=264 Identities=11% Similarity=0.117 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN-HTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~-~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
.|...|...++.+|.|+-..+.-|.+....|++..|..+|.++|.++|.. +..-+..+.+..+.|..+.|+..|.|+++
T Consensus 148 ~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralq 227 (1018)
T KOG2002|consen 148 DADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQ 227 (1018)
T ss_pred HHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHh
Confidence 44444555555555555555544444444555555555555555444442 12222233334444445555555555555
Q ss_pred hCCCcHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---CH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGN---VAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPN---VV 194 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~---~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~---~~ 194 (476)
++|.+......++.+.....+ +..+...+.++...+|.+ .+...++..+...|++..+..+...++...-. -.
T Consensus 228 Ldp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 228 LDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred cChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH
Confidence 555444444444444433322 333444444444444443 33444444444445555555555444443211 12
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHH
Q 039282 195 SSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAI 272 (476)
Q Consensus 195 ~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i 272 (476)
+.++.+|..+...|+++.|...|..++.. .+ + ...--+...++.....|+++.+ .||+.+..-++-..++
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-~~-----d--~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm 379 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKA-DN-----D--NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETM 379 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHcc-CC-----C--CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHH
Confidence 33444455555555555555555555544 33 1 1222333444444444555444 3444433322222222
Q ss_pred HhccCCCCchhhHHHHHHcC----CHHHHHHHHHHHHhccC-CHHHHHHHHHHHhh
Q 039282 273 VGKGKAPKDKAYIHFEKSQG----ERERRRALYERLVERTK-HLKVWISYAKFEAS 323 (476)
Q Consensus 273 ~~~~~~p~~~~~~~~~~~~g----~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~ 323 (476)
. .++.++...+ ..++|..+..++++..| +...|+..+.+...
T Consensus 380 ~---------iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~ 426 (1018)
T KOG2002|consen 380 K---------ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ 426 (1018)
T ss_pred H---------HHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh
Confidence 1 2222222222 34455555555555555 55555555554443
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=7.2e-13 Score=134.06 Aligned_cols=275 Identities=12% Similarity=0.090 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH-TLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~-~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
+|++...+.-...+.-.-.++..+......|+++.|...|+++.+.+|++. ......+.+....|+++.|...+++++.
T Consensus 102 ~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~ 181 (398)
T PRK10747 102 QVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLE 181 (398)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455444443332222233444445666889999999999999999999985 4444558899999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-H--------HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-Q--------AWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~--------~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
..|+++.+....+.++...|+++.|..++.+..+..+.+ . .|..+........+.+....+++......|+
T Consensus 182 ~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~ 261 (398)
T PRK10747 182 VAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRH 261 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhC
Confidence 999999999999999999999999999999998876642 1 1222222222333445555556665566677
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH-----HHHHHhCChHH
Q 039282 193 VVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE-----ALRKEFGDWVL 267 (476)
Q Consensus 193 ~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A-----~~ek~~g~~~~ 267 (476)
++.++..++..+...|+.+.|..+.+++++. .+ +..+...|+.+ ..++++++ .+.+.+.+.+.
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~---------~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QY---------DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC---------CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHH
Confidence 8999999999999999999999999999987 44 33455566654 23565555 12222222221
Q ss_pred HHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhH
Q 039282 268 IEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSI 347 (476)
Q Consensus 268 ~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (476)
... .++.++...|++++|+..|+++++..|+...+..++..+... |+.
T Consensus 330 ---l~l---------~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~--------------------g~~ 377 (398)
T PRK10747 330 ---LWS---------TLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRL--------------------HKP 377 (398)
T ss_pred ---HHH---------HHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------------------CCH
Confidence 111 678899999999999999999999999888889999999988 889
Q ss_pred HhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHh
Q 039282 348 RGARRSHRKIYHQFATCLISSLSSSGVFEKGINYY 382 (476)
Q Consensus 348 ~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~ 382 (476)
++| ..+|.+++...
T Consensus 378 ~~A---------------------~~~~~~~l~~~ 391 (398)
T PRK10747 378 EEA---------------------AAMRRDGLMLT 391 (398)
T ss_pred HHH---------------------HHHHHHHHhhh
Confidence 999 99999998765
No 56
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.63 E-value=1.5e-13 Score=134.93 Aligned_cols=327 Identities=18% Similarity=0.283 Sum_probs=222.6
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 039282 49 EDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQ 128 (476)
Q Consensus 49 e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~ 128 (476)
++-|+.||.|+..|..+++-+..+ .++++|..||+.+.+.|.++.+|..|+..++..++++....+|.|||...-+ ..
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 778899999999999999988777 8999999999999999999999999999999999999999999999987554 89
Q ss_pred HHHHHHHHHHH-hCCHHHHHHHHHHHHhc-------CCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 039282 129 LWYKYIRMEEI-AGNVAAARLIFDRWMHW-------TPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK 199 (476)
Q Consensus 129 lw~~~~~~~~~-~g~~~~A~~~~eral~~-------~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~ 199 (476)
+|..|+.+... .|....++...-++..+ ++.+ .+|..|+.|+.. |-.
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~------------------------vea 143 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEG------------------------VEA 143 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHc------------------------ccc
Confidence 99999998754 34555555544444322 2222 667777776432 112
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--------HHHHHhCChHHH---
Q 039282 200 YAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--------ALRKEFGDWVLI--- 268 (476)
Q Consensus 200 ~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--------~~ek~~g~~~~~--- 268 (476)
.+.++..+ +++..|.+|++|+.. +..+.+.+|..|..||...+..-.- .|..+......+
T Consensus 144 ~gk~ee~Q-RI~~vRriYqral~t--------Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~l 214 (656)
T KOG1914|consen 144 VGKYEENQ-RITAVRRIYQRALVT--------PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNL 214 (656)
T ss_pred cccHHHHH-HHHHHHHHHHHHhcC--------ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence 23444444 889999999999987 3457889999999998876432211 111100000011
Q ss_pred ------------------------------------------------------HHHHHhccCCCC-chhhHHHHHHcCC
Q 039282 269 ------------------------------------------------------EDAIVGKGKAPK-DKAYIHFEKSQGE 293 (476)
Q Consensus 269 ------------------------------------------------------~~~i~~~~~~p~-~~~~~~~~~~~g~ 293 (476)
+..+...+.||. +..|..|....++
T Consensus 215 t~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~ 294 (656)
T KOG1914|consen 215 TRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISD 294 (656)
T ss_pred HhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhH
Confidence 111111122222 1133344444444
Q ss_pred --------------HHHHHHHHHHHHhccC--CHHHHHHHHHHHhhcCCCCCCCC-------CCc-hh----------HH
Q 039282 294 --------------RERRRALYERLVERTK--HLKVWISYAKFEASALSKDGGNP-------DLS-EA----------DL 339 (476)
Q Consensus 294 --------------~e~Ar~l~e~~l~~~~--~~~vw~~~a~~e~~~~~~~~~~~-------~~~-~~----------~~ 339 (476)
.++++.+||+++.... +..++..|+.++...-++.+.+. .+. .. .-
T Consensus 295 l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn 374 (656)
T KOG1914|consen 295 LLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMN 374 (656)
T ss_pred HHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHH
Confidence 5789999999987764 66788899999887744322110 000 00 11
Q ss_pred HHhhHhhHHhhhhhhhHHhHHHHh----------------hh--hccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHH
Q 039282 340 CERKKQSIRGARRSHRKIYHQFAT----------------CL--ISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWL 401 (476)
Q Consensus 340 ~~~~~~~~~~A~~~~~~~~~~~~~----------------~~--~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~ 401 (476)
|-.....+..| |.||-++-+ .+ .+...|-.||+-+++.+.+. -..-..|+
T Consensus 375 ~irR~eGlkaa----R~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~--------p~yv~~Yl 442 (656)
T KOG1914|consen 375 FIRRAEGLKAA----RKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDS--------PEYVLKYL 442 (656)
T ss_pred HHHHhhhHHHH----HHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC--------hHHHHHHH
Confidence 44444555555 666666654 12 22688899999999999877 35778899
Q ss_pred HHHHhcCCHhhHHHHHhhCCh
Q 039282 402 NMERSFGELGDVNLVQAMLPK 422 (476)
Q Consensus 402 ~fE~~~G~~~~~~~v~~~~p~ 422 (476)
+|-...|+...+..+++|.-+
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~ 463 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLT 463 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHh
Confidence 999999999999999887543
No 57
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=99.61 E-value=3.4e-13 Score=135.01 Aligned_cols=305 Identities=17% Similarity=0.276 Sum_probs=222.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 039282 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLW 130 (476)
Q Consensus 51 ~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw 130 (476)
.+..+-.+...|..+..--....+.+.++.+|...|...|.....|.+|++.+.+.|+...+..+|+|++.-.|.+..+|
T Consensus 37 ~~~~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW 116 (577)
T KOG1258|consen 37 ILSNDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLW 116 (577)
T ss_pred ccccchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence 34444556677766666555556678999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH-HhCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 039282 131 YKYIRMEE-IAGNVAAARLIFDRWMHWTPDQ----QAWLSYIKFELRYEQVELARQVFERLVQCHPNVV-SSWIKYAKFE 204 (476)
Q Consensus 131 ~~~~~~~~-~~g~~~~A~~~~eral~~~P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~-~~w~~~a~~~ 204 (476)
..|..+.. ..|+....+..|++|......+ .+|..|+.++..+++..+...+|+|.+...-... ..+..|..+.
T Consensus 117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l 196 (577)
T KOG1258|consen 117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLL 196 (577)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHH
Confidence 99999874 4578888999999999887754 8899999999999999999999999886311100 0000000000
Q ss_pred H--------------------------------------------H-cCCHHHHH------------------------H
Q 039282 205 M--------------------------------------------R-RGEIDRAR------------------------N 215 (476)
Q Consensus 205 ~--------------------------------------------~-~g~~~~A~------------------------~ 215 (476)
. . .+..+.+. .
T Consensus 197 ~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~ 276 (577)
T KOG1258|consen 197 NQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRW 276 (577)
T ss_pred hcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 0 0 01112222 2
Q ss_pred HHHHHHHhhcCCCCCC-ChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcC
Q 039282 216 VYERALEKKLADGDGD-DDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQG 292 (476)
Q Consensus 216 ~~e~al~~~~p~~~~~-~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g 292 (476)
.|+..|.. |..... .+...-..|..|..++...|++++. .|++..-.-..+..... .|+++....|
T Consensus 277 ~fE~~Ikr--pYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWi---------ky~~~m~~~~ 345 (577)
T KOG1258|consen 277 GFEEGIKR--PYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWI---------KYARWMESSG 345 (577)
T ss_pred hhhhhccc--cccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHH---------HHHHHHHHcC
Confidence 22222221 111111 3335567899999999998888877 34544333333344433 7888888888
Q ss_pred CHHHHHHHHHHHHhcc-C-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCc
Q 039282 293 ERERRRALYERLVERT-K-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLS 370 (476)
Q Consensus 293 ~~e~Ar~l~e~~l~~~-~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 370 (476)
+.+-|..++.++++.+ + .+.+-+.++.|+... |++..|
T Consensus 346 ~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~--------------------~n~~~A-------------------- 385 (577)
T KOG1258|consen 346 DVSLANNVLARACKIHVKKTPIIHLLEARFEESN--------------------GNFDDA-------------------- 385 (577)
T ss_pred chhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh--------------------ccHHHH--------------------
Confidence 8888888888888876 3 677888888888888 999999
Q ss_pred hhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHH
Q 039282 371 SSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNL 415 (476)
Q Consensus 371 ~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~ 415 (476)
+.++++....++.- +.+-..|+.+|...|+.+....
T Consensus 386 -~~~lq~i~~e~pg~--------v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 386 -KVILQRIESEYPGL--------VEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred -HHHHHHHHhhCCch--------hhhHHHHHhHHHHhcchhhhhH
Confidence 99999998887433 5667788888999999888774
No 58
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.59 E-value=1.1e-11 Score=134.01 Aligned_cols=179 Identities=11% Similarity=0.024 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|+..|+++++.+|.+......++.++...|+.+.|+.++++++.-.|.+.......+.++...|+++.|..+|++++.
T Consensus 51 ~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~ 130 (822)
T PRK14574 51 APVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLK 130 (822)
T ss_pred HHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 48999999999999999655448888888899999999999999943344444455557799999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYA 201 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a 201 (476)
..|+++.++..++..+...++.+.|+..++++...+|........+.+....++..+|...|++++..+|++.+++..+.
T Consensus 131 ~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~ 210 (822)
T PRK14574 131 KDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHL 210 (822)
T ss_pred hCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999989999999999999999999999999755555566665667777799999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 039282 202 KFEMRRGEIDRARNVYERA 220 (476)
Q Consensus 202 ~~~~~~g~~~~A~~~~e~a 220 (476)
..+...|-...|.++...-
T Consensus 211 ~~l~~~~~~~~a~~l~~~~ 229 (822)
T PRK14574 211 EILQRNRIVEPALRLAKEN 229 (822)
T ss_pred HHHHHcCCcHHHHHHHHhC
Confidence 9999999888887776643
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=5.2e-13 Score=132.00 Aligned_cols=255 Identities=12% Similarity=0.078 Sum_probs=216.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
....++++..+..+|-+.....-.+.++...|+..+---+=-+.++.+|+.+-.|+..|-++...|++.+||+.|-+|..
T Consensus 261 ~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~ 340 (611)
T KOG1173|consen 261 KECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATT 340 (611)
T ss_pred HHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhh
Confidence 46778889999999999888877777888888888887777888899999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFE-LRYEQVELARQVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~-~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~ 200 (476)
++|.-...|..||..+...|..+.|...|.+|-+.-|+...=.-|+.++ .+.+++..|...|..++..+|++|-+...+
T Consensus 341 lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~El 420 (611)
T KOG1173|consen 341 LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHEL 420 (611)
T ss_pred cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhh
Confidence 9999999999999999999999999999999999999876556666665 568999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCC
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKA 278 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~ 278 (476)
|......+.+.+|...|+.++.. .+...+.. .....++...+....+++.++.| .|++.+ .++
T Consensus 421 gvvay~~~~y~~A~~~f~~~l~~-ik~~~~e~-~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL-------------~l~ 485 (611)
T KOG1173|consen 421 GVVAYTYEEYPEALKYFQKALEV-IKSVLNEK-IFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL-------------LLS 485 (611)
T ss_pred hheeehHhhhHHHHHHHHHHHHH-hhhccccc-cchhHHHHhHHHHHHHHhhHHHHHHHHHHHH-------------HcC
Confidence 99999999999999999999955 33110111 13567899999999999999998 334332 245
Q ss_pred CCch----hhHHHHHHcCCHHHHHHHHHHHHhccCCH
Q 039282 279 PKDK----AYIHFEKSQGERERRRALYERLVERTKHL 311 (476)
Q Consensus 279 p~~~----~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~ 311 (476)
|++. +.+-++...|+++.|.+.|.++|-+.|+.
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 5543 44556678999999999999999999943
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.59 E-value=4.1e-13 Score=130.26 Aligned_cols=181 Identities=13% Similarity=0.116 Sum_probs=145.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|+..|++++..+|.++.+|..+|..+...|+++.|...|++++.++|++..+|...+.++...|+++.|...|++++.
T Consensus 81 ~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 81 ALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHH--H----HHHHHHHHhCCCCHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELA--R----QVFERLVQCHPNVVS 195 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A--~----~~~~r~l~~~p~~~~ 195 (476)
..|+++.. ..+..+....++.+.|...|.+.+...+.. .|. +.......|+...+ . ..++..+...|..++
T Consensus 161 ~~P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~-~~~-~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~e 237 (296)
T PRK11189 161 DDPNDPYR-ALWLYLAESKLDPKQAKENLKQRYEKLDKE-QWG-WNIVEFYLGKISEETLMERLKAGATDNTELAERLCE 237 (296)
T ss_pred hCCCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhhCCcc-ccH-HHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99997631 122233455688999999998876553322 333 23333334444332 2 222333355666678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 196 SWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 196 ~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
+|+.+|..+...|++++|+..|+++++. .|
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~-~~ 267 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALAN-NV 267 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC
Confidence 9999999999999999999999999998 65
No 61
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=4e-12 Score=129.23 Aligned_cols=288 Identities=9% Similarity=0.005 Sum_probs=221.5
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhCCH
Q 039282 65 YAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD-QLWYKYIRMEEIAGNV 143 (476)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~-~lw~~~~~~~~~~g~~ 143 (476)
-|.+....|+++.|++.+.++.+..|.....++..+.+....|+++.|...|.++.+..|.+. .+...++.+....|++
T Consensus 90 ~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~ 169 (409)
T TIGR00540 90 EALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL 169 (409)
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH
Confidence 345556789999999999999999999888888899999999999999999999999999875 5777789999999999
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH----HHHHHHcCCHHHHHHHHH
Q 039282 144 AAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY----AKFEMRRGEIDRARNVYE 218 (476)
Q Consensus 144 ~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~----a~~~~~~g~~~~A~~~~e 218 (476)
+.|+..++++++..|++ .++..++.++.+.|+++.|...+.+..+..+.++.....+ ..-....+..+.+...+.
T Consensus 170 ~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 170 HAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999999999986 7889999999999999999999999998754434433211 111123334445566788
Q ss_pred HHHHhhcCCCCCCCh-hhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHH----HHHhccCCCCchhhHHHHHHc
Q 039282 219 RALEKKLADGDGDDD-EGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIED----AIVGKGKAPKDKAYIHFEKSQ 291 (476)
Q Consensus 219 ~al~~~~p~~~~~~~-~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~----~i~~~~~~p~~~~~~~~~~~~ 291 (476)
.+... .| .. .....++..++..+...|+++.| ..++.....+.-.. .+. .++. ...
T Consensus 250 ~~~~~-~p-----~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~---------~~~~--l~~ 312 (409)
T TIGR00540 250 NWWKN-QP-----RHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCL---------PIPR--LKP 312 (409)
T ss_pred HHHHH-CC-----HHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHH---------Hhhh--cCC
Confidence 88877 66 21 13678999999999999999998 23332221111110 111 1111 235
Q ss_pred CCHHHHHHHHHHHHhccC-CH--HHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhcc
Q 039282 292 GERERRRALYERLVERTK-HL--KVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISS 368 (476)
Q Consensus 292 g~~e~Ar~l~e~~l~~~~-~~--~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 368 (476)
++.+.+++.++++++..| ++ .+..+++.+.... |++++|
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~--------------------~~~~~A------------------ 354 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH--------------------GEFIEA------------------ 354 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc--------------------ccHHHH------------------
Confidence 778999999999999999 77 7888999999988 999999
Q ss_pred CchhHHHHH--HHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhh
Q 039282 369 LSSSGVFEK--GINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAM 419 (476)
Q Consensus 369 ~~~r~ifer--a~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~ 419 (476)
+..|++ +++..++. ..+..+.......|+.+.+.++.++
T Consensus 355 ---~~~le~a~a~~~~p~~---------~~~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 355 ---ADAFKNVAACKEQLDA---------NDLAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred ---HHHHHHhHHhhcCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999995 55544433 2355888888999999999888775
No 62
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.58 E-value=1.6e-13 Score=136.12 Aligned_cols=210 Identities=15% Similarity=0.118 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|.-.||.+++++|.+.++|..+|.....+++-..|+..+.|||+++|+|..+...++-.+...|.-..|...++..+.
T Consensus 302 ~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~ 381 (579)
T KOG1125|consen 302 SEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIR 381 (579)
T ss_pred hHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 56888999999999999999999999999999999999999999999999999998888888777666666666666654
Q ss_pred hC-----------------------------------------C--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 039282 122 VL-----------------------------------------P--HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP 158 (476)
Q Consensus 122 ~~-----------------------------------------p--~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P 158 (476)
.. | .++++...++.++...|+++.|..+|+.+|...|
T Consensus 382 ~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~P 461 (579)
T KOG1125|consen 382 NKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKP 461 (579)
T ss_pred hCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCC
Confidence 43 3 3577888888888888999999999999999999
Q ss_pred CH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC--CCCChhh
Q 039282 159 DQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADG--DGDDDEG 235 (476)
Q Consensus 159 ~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~--~~~~~~~ 235 (476)
.+ .+|..++..+.......+|+..|.|++++.|+.+.+++++|-.++..|.+.+|...|-.||.. .+.+ ..+....
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m-q~ks~~~~~~~~~ 540 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM-QRKSRNHNKAPMA 540 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh-hhcccccccCCcc
Confidence 87 889999999999999999999999999999999999999999999999999999999999987 5421 1222223
Q ss_pred HHHHHHHHHHHHHHccc
Q 039282 236 AEQLFVAFAEFEERYKE 252 (476)
Q Consensus 236 ~~~l~~~~a~~e~~~~~ 252 (476)
...+|..+-.++...+.
T Consensus 541 se~iw~tLR~als~~~~ 557 (579)
T KOG1125|consen 541 SENIWQTLRLALSAMNR 557 (579)
T ss_pred hHHHHHHHHHHHHHcCC
Confidence 45677666554444443
No 63
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.56 E-value=8.7e-14 Score=133.53 Aligned_cols=137 Identities=25% Similarity=0.492 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI-NKFINHARNVWDRAVAVLPHVDQLWYKYIRMEE 138 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~-~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~ 138 (476)
-+|+.|.++....+..+.||.+|.+|+...+.+..+|..+|.+|.. .++...|+.+|+++++..|.+..+|..|+.++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3799999999998889999999999996666678999999999888 567777999999999999999999999999999
Q ss_pred HhCCHHHHHHHHHHHHhcCCCHH----HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Q 039282 139 IAGNVAAARLIFDRWMHWTPDQQ----AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS 196 (476)
Q Consensus 139 ~~g~~~~A~~~~eral~~~P~~~----~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~ 196 (476)
..|+.+.||.+|++++...|... +|..|+.|+.+.|+.+.+..++.|+....|....+
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 99999999999999999988765 89999999999999999999999998888874433
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.55 E-value=1e-12 Score=130.39 Aligned_cols=262 Identities=14% Similarity=0.107 Sum_probs=213.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC
Q 039282 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGN 142 (476)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~ 142 (476)
+.-|..+++.|++..|.-.||.|+..+|.+..+|..+|.....+++-..|+..+.||+++.|++-.+...++-.+...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 46677888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHH----HHH-----HHhhhHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHH
Q 039282 143 VAAARLIFDRWMHWTPDQQAWLSYI----KFE-----LRYEQVELARQVFERLVQCHP--NVVSSWIKYAKFEMRRGEID 211 (476)
Q Consensus 143 ~~~A~~~~eral~~~P~~~~w~~~~----~~~-----~~~g~~~~A~~~~~r~l~~~p--~~~~~w~~~a~~~~~~g~~~ 211 (476)
-..|...+.+||...|... |.... .+. .....+.....+|-.+....| .++++..-++.++.-.|+++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~-~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYV-HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHHHHHhCccch-hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999999999999887631 11111 000 112235667788888888888 57999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHc
Q 039282 212 RARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQ 291 (476)
Q Consensus 212 ~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 291 (476)
+|...|+.||.. .| ++..+|..++-.+ ...
T Consensus 448 raiDcf~~AL~v-~P--------nd~~lWNRLGAtL-----------------------------------------AN~ 477 (579)
T KOG1125|consen 448 RAVDCFEAALQV-KP--------NDYLLWNRLGATL-----------------------------------------ANG 477 (579)
T ss_pred HHHHHHHHHHhc-CC--------chHHHHHHhhHHh-----------------------------------------cCC
Confidence 999999999999 88 7888999887421 134
Q ss_pred CCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCc
Q 039282 292 GERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLS 370 (476)
Q Consensus 292 g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 370 (476)
.+.++|+..|.|||++.| .+.+|.+++--..+. |.|.+|
T Consensus 478 ~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl--------------------G~ykEA-------------------- 517 (579)
T KOG1125|consen 478 NRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL--------------------GAYKEA-------------------- 517 (579)
T ss_pred cccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh--------------------hhHHHH--------------------
Confidence 567899999999999999 788999999888888 999999
Q ss_pred hhHHHHHHHHHhhhcCC--CChHHHHHHHHHHHHHHHhcCCHhhHHHH
Q 039282 371 SSGVFEKGINYYKTSAP--EMMEERVMLLEEWLNMERSFGELGDVNLV 416 (476)
Q Consensus 371 ~r~ifera~~~~~~~~~--~~~~~r~~l~~~~~~fE~~~G~~~~~~~v 416 (476)
...|-.|+..-+.+.. +....--.||...+.+-...|..+.+..+
T Consensus 518 -~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 518 -VKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred -HHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 8888888887665311 11111135888887777777776644443
No 65
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=1.1e-11 Score=128.79 Aligned_cols=295 Identities=14% Similarity=0.096 Sum_probs=204.0
Q ss_pred cHHHHHHHHhhccCCCCC--CChHHhhHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 039282 14 TAEQILRESQEHFGEQKS--VDPTELYDYR---LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEE 88 (476)
Q Consensus 14 ~a~q~l~~a~~~~~~~~i--~d~eel~e~~---~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~ 88 (476)
+|+-||.|.-...|...+ ..+-+..+.+ .++....=.+--.+|.+.+.|..++....++|.+.+|+-+|.||+..
T Consensus 157 eA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~ 236 (895)
T KOG2076|consen 157 EAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQA 236 (895)
T ss_pred HHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 444455555544444322 2223333333 24444444445568999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH---
Q 039282 89 DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV-----DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ--- 160 (476)
Q Consensus 89 ~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~-----~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~--- 160 (476)
+|.+..+....+.++.+.|+...|...|.+++..+|.+ ..+-..+++.+...+..+.|.+.++.++..+.+.
T Consensus 237 ~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ 316 (895)
T KOG2076|consen 237 NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASL 316 (895)
T ss_pred CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999943 3344456777777777799999999999844332
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH----------------------h--CCC----CHHH-HHHHHHHHHHcCCHH
Q 039282 161 QAWLSYIKFELRYEQVELARQVFERLVQ----------------------C--HPN----VVSS-WIKYAKFEMRRGEID 211 (476)
Q Consensus 161 ~~w~~~~~~~~~~g~~~~A~~~~~r~l~----------------------~--~p~----~~~~-w~~~a~~~~~~g~~~ 211 (476)
.....|+.++.....+++|......... . .|+ +..+ .+..+.+..+.++..
T Consensus 317 ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~ 396 (895)
T KOG2076|consen 317 EDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELL 396 (895)
T ss_pred cHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchH
Confidence 4466777888888888887666555443 1 111 1222 333333333334443
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHH
Q 039282 212 RARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEK 289 (476)
Q Consensus 212 ~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~ 289 (476)
++ +....+.. .- .....+.++...+..+...|.+..| .|-.. -+.+...... -+...+.++.
T Consensus 397 e~--ll~~l~~~-n~-----~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i-~~~~~~~~~~-------vw~~~a~c~~ 460 (895)
T KOG2076|consen 397 EA--LLHFLVED-NV-----WVSDDVDLYLDLADALTNIGKYKEALRLLSPI-TNREGYQNAF-------VWYKLARCYM 460 (895)
T ss_pred HH--HHHHHHHh-cC-----ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHH-hcCccccchh-------hhHHHHHHHH
Confidence 33 33333444 21 2346778999999999999998888 11111 1111111100 1126778889
Q ss_pred HcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 290 SQGERERRRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 290 ~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
..|.++.|...|+++|...| +.++-++++.+....
T Consensus 461 ~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~ 496 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQL 496 (895)
T ss_pred HHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhc
Confidence 99999999999999999999 899999999999988
No 66
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.5e-12 Score=119.83 Aligned_cols=297 Identities=10% Similarity=0.032 Sum_probs=244.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 039282 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLP 124 (476)
Q Consensus 45 ~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p 124 (476)
..++-......|.|+.....+|+++...|+...|.-.|++++.+||.++...-.|+.++...|.++...++-.+.+....
T Consensus 218 t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~ 297 (564)
T KOG1174|consen 218 TFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK 297 (564)
T ss_pred HHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh
Confidence 34455556677999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039282 125 HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKF 203 (476)
Q Consensus 125 ~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~ 203 (476)
....-|+--+.......++..|...-+++|+.+|.+ ..+.--+..+...|..+.|.-.|+.+..+.|...++|--++..
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hs 377 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHS 377 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 778889998888888899999999999999999987 7777888899999999999999999999999989999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH-HHHH-HccchhHH--HHHHHhCChHHHHHHHHhccCCC
Q 039282 204 EMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFA-EFEE-RYKESESE--ALRKEFGDWVLIEDAIVGKGKAP 279 (476)
Q Consensus 204 ~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a-~~e~-~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p 279 (476)
|...|.+.+|.-.-..++.. +| .+...+..++ .++. .-.--|+| .+++.+...+++-.++.
T Consensus 378 YLA~~~~kEA~~~An~~~~~-~~--------~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~------ 442 (564)
T KOG1174|consen 378 YLAQKRFKEANALANWTIRL-FQ--------NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVN------ 442 (564)
T ss_pred HHhhchHHHHHHHHHHHHHH-hh--------cchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHH------
Confidence 99999999999999988888 87 4444443332 1111 11112333 45666666777666665
Q ss_pred CchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhH
Q 039282 280 KDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYH 359 (476)
Q Consensus 280 ~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 359 (476)
..+.+....|.++.+..++++.|...|+..+...++.|.... +.+.+|
T Consensus 443 ---~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~--------------------Ne~Q~a--------- 490 (564)
T KOG1174|consen 443 ---LIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQ--------------------NEPQKA--------- 490 (564)
T ss_pred ---HHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHh--------------------hhHHHH---------
Confidence 677888899999999999999999999999999999999887 788999
Q ss_pred HHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcC
Q 039282 360 QFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFG 408 (476)
Q Consensus 360 ~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G 408 (476)
-.-|..|++..|.+ ..-++-...+|.+-.
T Consensus 491 ------------m~~y~~ALr~dP~~--------~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 491 ------------MEYYYKALRQDPKS--------KRTLRGLRLLEKSDD 519 (564)
T ss_pred ------------HHHHHHHHhcCccc--------hHHHHHHHHHHhccC
Confidence 99999999887766 334555555565543
No 67
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.8e-11 Score=113.58 Aligned_cols=243 Identities=14% Similarity=0.150 Sum_probs=195.5
Q ss_pred CChHHhhHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHH
Q 039282 32 VDPTELYDYR-LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN-----HTLWCKYAEFEMI 105 (476)
Q Consensus 32 ~d~eel~e~~-~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~-----~~lw~~y~~~e~~ 105 (476)
..+.-|.+.| ++|...|-..+..+|...++.+.+|.++.+.|.+++|+.+....+. .|+- .-+...++.-++.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHHHH
Confidence 3444444433 8999999999999999999999999999999999999999887664 3442 3567788889999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH---H---HHHHHHHHHHHhhhHHHH
Q 039282 106 NKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ---Q---AWLSYIKFELRYEQVELA 179 (476)
Q Consensus 106 ~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~---~---~w~~~~~~~~~~g~~~~A 179 (476)
.|-++.|..+|...+.....-....-.++.++....++.+|+.+-++..+..|.. . .+-.++.-.....+.++|
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A 199 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRA 199 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHH
Confidence 9999999999998887655567888889999999999999999999999998875 2 344444555566889999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHH
Q 039282 180 RQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALR 259 (476)
Q Consensus 180 ~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~e 259 (476)
+.++.++++.+|+++.+-+.++.++...|+++.|.+.++++++. .| + -...+...
T Consensus 200 ~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~-----~--yl~evl~~----------------- 254 (389)
T COG2956 200 RELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NP-----E--YLSEVLEM----------------- 254 (389)
T ss_pred HHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-Ch-----H--HHHHHHHH-----------------
Confidence 99999999999999999999999999999999999999999998 66 1 22222222
Q ss_pred HHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 039282 260 KEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASA 324 (476)
Q Consensus 260 k~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~ 324 (476)
+...|...|+.+..+..+.++.+..+.+.+-+.++.+....
T Consensus 255 ------------------------L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~ 295 (389)
T COG2956 255 ------------------------LYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQ 295 (389)
T ss_pred ------------------------HHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHh
Confidence 22344467888888888888888877666667777766666
No 68
>PLN02789 farnesyltranstransferase
Probab=99.54 E-value=4.9e-12 Score=122.93 Aligned_cols=184 Identities=13% Similarity=0.066 Sum_probs=162.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH--HHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQN-EFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFI--NHARNVWDR 118 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~-~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~--~~A~~~~~r 118 (476)
.+|...++++|..+|.+..+|...+.++...| +++++...+++++..+|++..+|...+.+....|.. +.+..++++
T Consensus 54 erAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~k 133 (320)
T PLN02789 54 PRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRK 133 (320)
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHH
Confidence 48999999999999999999999999999888 689999999999999999999999998888777763 778999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHh---hh----HHHHHHHHHHHHHhC
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRY---EQ----VELARQVFERLVQCH 190 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~---g~----~~~A~~~~~r~l~~~ 190 (476)
++..+|++..+|...+.+....|.++.+...+.++|+.+|.+ .+|...+...... |. .+.+.....+++...
T Consensus 134 al~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~ 213 (320)
T PLN02789 134 ILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN 213 (320)
T ss_pred HHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999986 8898888776654 22 246778888999999
Q ss_pred CCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhhcC
Q 039282 191 PNVVSSWIKYAKFEMRR----GEIDRARNVYERALEKKLA 226 (476)
Q Consensus 191 p~~~~~w~~~a~~~~~~----g~~~~A~~~~e~al~~~~p 226 (476)
|++..+|..++.++... +...+|..++..++.. .|
T Consensus 214 P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~-~~ 252 (320)
T PLN02789 214 PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK-DS 252 (320)
T ss_pred CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc-cC
Confidence 99999999999988773 4556788888888876 55
No 69
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.53 E-value=4.3e-11 Score=129.53 Aligned_cols=272 Identities=11% Similarity=0.029 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|+..+++++...|........+|..+...|++++|+.+|++++..+|+++.++..++..+...++.++|...+.+++.
T Consensus 85 ~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 85 QEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAE 164 (822)
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcc
Confidence 47777777777434444445555566777778888888888888888888877777777777777777777777777777
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHh---------------------------
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRY--------------------------- 173 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~--------------------------- 173 (476)
..|..... ...+.++...++...|...|++++...|++ .+...|...+.+.
T Consensus 165 ~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~ 243 (822)
T PRK14574 165 RDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER 243 (822)
T ss_pred cCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence 77763332 444444444555555777777777777753 3333332222222
Q ss_pred --------------------------------------------------------------hhHHHHHHHHHHHHHhCC
Q 039282 174 --------------------------------------------------------------EQVELARQVFERLVQCHP 191 (476)
Q Consensus 174 --------------------------------------------------------------g~~~~A~~~~~r~l~~~p 191 (476)
|++..++..|+.+.....
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 223333333333322110
Q ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCC--CCCCChhhHHHHHHHHHHH---HHHccchhHHH----H-HH
Q 039282 192 N-VVSSWIKYAKFEMRRGEIDRARNVYERALEKKLAD--GDGDDDEGAEQLFVAFAEF---EERYKESESEA----L-RK 260 (476)
Q Consensus 192 ~-~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~--~~~~~~~~~~~l~~~~a~~---e~~~~~~e~A~----~-ek 260 (476)
. -.-+-...|..|...+..++|..+|..++.. .|. ....+......+|.+|.+- ++...-.++.. + -.
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~-~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYS-DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc-cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 0 0123344567777888888888888888775 321 0122333345677766553 22222222210 0 00
Q ss_pred HhC-----ChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 261 EFG-----DWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 261 ~~g-----~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
.+| ..+....... ..+..+.-.|+...|.+++++++...| ++.+++.++.++...
T Consensus 403 ~~~~~~~~pn~d~~~~~~---------l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQT---------LLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR 463 (822)
T ss_pred ccCCCCCCCCccHHHHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 122 1223333332 344555667888888888888888887 788888888888777
No 70
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.53 E-value=1.4e-11 Score=115.05 Aligned_cols=305 Identities=9% Similarity=0.025 Sum_probs=233.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|..++..+|+++.+.++-|..|+..|...-|..-+++.|.+.|+...+-+.-+.+++++|.++.|..-|+..+.
T Consensus 55 sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~ 134 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQ 134 (504)
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcH-------------HHHHHHHHH--HHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHH
Q 039282 122 VLPHVD-------------QLWYKYIRM--EEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFER 185 (476)
Q Consensus 122 ~~p~~~-------------~lw~~~~~~--~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r 185 (476)
..|.+. +-|...-++ ....|+...|+......|+..|=. .+....+..+...|+...|+.-+..
T Consensus 135 ~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ 214 (504)
T KOG0624|consen 135 HEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQ 214 (504)
T ss_pred cCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999632 223333222 233578999999999999999855 7788888999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH---------
Q 039282 186 LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--------- 256 (476)
Q Consensus 186 ~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--------- 256 (476)
+-++..++.+..+....++...|+...+......|+.. .| +-..+...|...-.+.......+.+
T Consensus 215 askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-dp-----dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~c 288 (504)
T KOG0624|consen 215 ASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-DP-----DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTEC 288 (504)
T ss_pred HHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-Cc-----chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999999999999999999999 88 4334444444444443333333332
Q ss_pred --HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCC
Q 039282 257 --ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPD 333 (476)
Q Consensus 257 --~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~ 333 (476)
..|+.+...+.+..+... + ......++...|++.+|+....++|...| ++.+...-+..+...
T Consensus 289 le~ge~vlk~ep~~~~ir~~-~----~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~d--------- 354 (504)
T KOG0624|consen 289 LEAGEKVLKNEPEETMIRYN-G----FRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGD--------- 354 (504)
T ss_pred HHHHHHHHhcCCcccceeee-e----eheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhh---------
Confidence 122222222211100000 0 00233456678999999999999999999 699999888877765
Q ss_pred CchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHH
Q 039282 334 LSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINY 381 (476)
Q Consensus 334 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~ 381 (476)
..|+.| +.-|+.+...--+..++|+=.++|-+.
T Consensus 355 -----------E~YD~A----I~dye~A~e~n~sn~~~reGle~Akrl 387 (504)
T KOG0624|consen 355 -----------EMYDDA----IHDYEKALELNESNTRAREGLERAKRL 387 (504)
T ss_pred -----------HHHHHH----HHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 677777 666666666544555556666665443
No 71
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=4.4e-11 Score=121.06 Aligned_cols=280 Identities=9% Similarity=0.047 Sum_probs=204.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhCCHHH
Q 039282 68 WEGSQNEFDRARSMWELALEEDCRNHTLWCKY-AEFEMINKFINHARNVWDRAVAVLPHVDQ-LWYKYIRMEEIAGNVAA 145 (476)
Q Consensus 68 ~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y-~~~e~~~~~~~~A~~~~~ral~~~p~~~~-lw~~~~~~~~~~g~~~~ 145 (476)
.....|+++.|++...++....+ ++.+.... +......|+++.|...|.++.+..|++.. .....+.+....|+++.
T Consensus 93 ~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 93 LKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 33447999999988888765433 34444444 55668999999999999999999998643 33344788899999999
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHHcCCHHHHHHH
Q 039282 146 ARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI--------KYAKFEMRRGEIDRARNV 216 (476)
Q Consensus 146 A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~--------~~a~~~~~~g~~~~A~~~ 216 (476)
|...++++.+..|++ .+....+..+.+.|+++.|..++.+..+..+.++.... .+..-.....+.+....+
T Consensus 172 Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 172 ARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999999986 77888889999999999999999999987766444322 222222222333333333
Q ss_pred HHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCH
Q 039282 217 YERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGER 294 (476)
Q Consensus 217 ~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~ 294 (476)
++..... .| +.+.+...|+......|+.+.| ..++........ .++. .|+.+ ..++.
T Consensus 252 w~~lp~~-~~--------~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~-~l~~---------l~~~l--~~~~~ 310 (398)
T PRK10747 252 WKNQSRK-TR--------HQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDE-RLVL---------LIPRL--KTNNP 310 (398)
T ss_pred HHhCCHH-Hh--------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHH---------HHhhc--cCCCh
Confidence 3333333 33 4678999999999999999988 222222211111 1111 22222 45999
Q ss_pred HHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhH
Q 039282 295 ERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSG 373 (476)
Q Consensus 295 e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ 373 (476)
+++.+..++.++.+| ++.+...++.+.... +++.+| +.
T Consensus 311 ~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~--------------------~~~~~A---------------------~~ 349 (398)
T PRK10747 311 EQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH--------------------GEWQEA---------------------SL 349 (398)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--------------------CCHHHH---------------------HH
Confidence 999999999999999 889999999999998 899999 99
Q ss_pred HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhh
Q 039282 374 VFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAM 419 (476)
Q Consensus 374 ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~ 419 (476)
.|++++..-|+. ..+..+...+...|+.+.+..+.++
T Consensus 350 ~le~al~~~P~~---------~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 350 AFRAALKQRPDA---------YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred HHHHHHhcCCCH---------HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999875543 2345678888899998888777664
No 72
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=1.8e-13 Score=126.71 Aligned_cols=184 Identities=14% Similarity=0.114 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
.+|...|...|...|.++......|+++...++.+.|.++|.++++.+|.|++..-..+.-+.-.++.+-|..+|.|.|+
T Consensus 273 ~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 273 ERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred HHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 57788888888888888888888888888888888888888888888888888777777777777888888888888888
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP--DQ--QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSW 197 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P--~~--~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w 197 (476)
.--.+++++..++.++...+.++.+...|+|++.... +. ++|.+++......|++.-|...|+-++..+|++.+++
T Consensus 353 mG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 353 MGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEAL 432 (478)
T ss_pred hcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHH
Confidence 8888899999999999999999999999999998754 32 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 198 IKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 198 ~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.+++.+..+.|+++.|+.++..|-+. .|
T Consensus 433 nNLavL~~r~G~i~~Arsll~~A~s~-~P 460 (478)
T KOG1129|consen 433 NNLAVLAARSGDILGARSLLNAAKSV-MP 460 (478)
T ss_pred HhHHHHHhhcCchHHHHHHHHHhhhh-Cc
Confidence 99999999999999999999999988 77
No 73
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=4.1e-11 Score=123.37 Aligned_cols=96 Identities=18% Similarity=0.303 Sum_probs=71.7
Q ss_pred hhHHHHHH-cCCHHHHHHHHHHHHhccC-CHH-HHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhH
Q 039282 283 AYIHFEKS-QGERERRRALYERLVERTK-HLK-VWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYH 359 (476)
Q Consensus 283 ~~~~~~~~-~g~~e~Ar~l~e~~l~~~~-~~~-vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 359 (476)
.++.++.. +++++.+|.++.-.+.... ... .|+.|+.+|... |+...|
T Consensus 466 ~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~--------------------g~~~~~--------- 516 (881)
T KOG0128|consen 466 LWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREY--------------------GDGPSA--------- 516 (881)
T ss_pred HHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHh--------------------CCchhH---------
Confidence 56666654 6678888888888777765 433 888888888887 777888
Q ss_pred HHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhH-HHHHhhCChhh
Q 039282 360 QFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDV-NLVQAMLPKKL 424 (476)
Q Consensus 360 ~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~-~~v~~~~p~~~ 424 (476)
|.++.+|+...... ++-..++..|..||.++|+.+.+ ....+++|+.-
T Consensus 517 ------------R~~~R~ay~~~~~~-----~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~~ 565 (881)
T KOG0128|consen 517 ------------RKVLRKAYSQVVDP-----EDALEVLEFFRRFEREYGTLESFDLCPEKVLPRVY 565 (881)
T ss_pred ------------HHHHHHHHhcCcCc-----hhHHHHHHHHHHHHhccccHHHHhhhHHhhcchhh
Confidence 99888887643322 33378999999999999998776 45666777644
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.7e-12 Score=120.29 Aligned_cols=231 Identities=12% Similarity=0.045 Sum_probs=198.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCH
Q 039282 64 NYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNV 143 (476)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~ 143 (476)
.+++++...|-+.+|.+.|..+|...|. ++.+..+..++.+..+...|..+|...+...|.+..+....+.+++..++.
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 6899999999999999999999987774 788888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 144 AAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222 (476)
Q Consensus 144 ~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~ 222 (476)
+.|.++|.++++.+|.+ +.....+.-+.-.++.+-|...|+|.+++...+++++.+++....-.+++|-+...|+||+.
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALS 386 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHh
Confidence 99999999999999976 44444444455567899999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHH
Q 039282 223 KKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRAL 300 (476)
Q Consensus 223 ~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l 300 (476)
. .. ++.....+|...+.+.-..|++.-| .|.-.+.+.+...+++. .++-+..+.|+++.||.+
T Consensus 387 t-at-----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealn---------NLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 387 T-AT-----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALN---------NLAVLAARSGDILGARSL 451 (478)
T ss_pred h-cc-----CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHH---------hHHHHHhhcCchHHHHHH
Confidence 8 55 4456778999999888888888877 57666665555544444 567777899999999999
Q ss_pred HHHHHhccCC
Q 039282 301 YERLVERTKH 310 (476)
Q Consensus 301 ~e~~l~~~~~ 310 (476)
+..+-...|+
T Consensus 452 l~~A~s~~P~ 461 (478)
T KOG1129|consen 452 LNAAKSVMPD 461 (478)
T ss_pred HHHhhhhCcc
Confidence 9999888774
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.46 E-value=1.2e-11 Score=116.02 Aligned_cols=172 Identities=15% Similarity=0.025 Sum_probs=147.9
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH--
Q 039282 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH---TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQ-- 128 (476)
Q Consensus 54 ~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~---~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~-- 128 (476)
.++.....++..|..+...|+++.|...|++++..+|.++ .+|+..+.++...|+++.|...|++++...|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3455688999999999999999999999999999999876 67899999999999999999999999999998665
Q ss_pred -HHHHHHHHHHHh--------CCHHHHHHHHHHHHhcCCCH-HHH-----------------HHHHHHHHHhhhHHHHHH
Q 039282 129 -LWYKYIRMEEIA--------GNVAAARLIFDRWMHWTPDQ-QAW-----------------LSYIKFELRYEQVELARQ 181 (476)
Q Consensus 129 -lw~~~~~~~~~~--------g~~~~A~~~~eral~~~P~~-~~w-----------------~~~~~~~~~~g~~~~A~~ 181 (476)
.|+..+.++... |+++.|...|++++...|++ ..+ ...+.++...|++.+|..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 677888877665 77899999999999999985 222 244567778899999999
Q ss_pred HHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 182 VFERLVQCHPNV---VSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 182 ~~~r~l~~~p~~---~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.|++++..+|++ +.+|..++..+...|++++|...++..... +|
T Consensus 188 ~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~-~~ 234 (235)
T TIGR03302 188 RFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN-YP 234 (235)
T ss_pred HHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC
Confidence 999999998864 579999999999999999999999888776 65
No 76
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.44 E-value=1.1e-12 Score=125.80 Aligned_cols=132 Identities=29% Similarity=0.514 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA-GNVAAARLIFDRWMHWTPDQ-QAWLSYIKFEL 171 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~-g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~ 171 (476)
-+|+.|+.+..+.+.++.||.+|.+|+...+....+|..++.++... ++...|+.+|+++++..|.+ .+|..|++++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 47999999999999999999999999976666789999999999885 56666999999999999987 89999999999
Q ss_pred HhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 172 RYEQVELARQVFERLVQCHPNVV---SSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 172 ~~g~~~~A~~~~~r~l~~~p~~~---~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
..|+.++||.+|++++...|... .+|..|+.|+...|+.+.+..+++++.+. +|
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~-~~ 138 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL-FP 138 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH-TT
T ss_pred HhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hh
Confidence 99999999999999999888733 69999999999999999999999999999 88
No 77
>PLN02789 farnesyltranstransferase
Probab=99.43 E-value=4.3e-11 Score=116.36 Aligned_cols=168 Identities=13% Similarity=0.057 Sum_probs=146.6
Q ss_pred HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCH--HHH
Q 039282 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK-FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNV--AAA 146 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~-~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~--~~A 146 (476)
...+..++|...+++++.++|.+.++|...+.++...| .++++...+++++..+|.+..+|...+.+....|.. +.+
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHH
Confidence 34567889999999999999999999999999988888 689999999999999999999999999988888864 678
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCH----HHHHHHHH
Q 039282 147 RLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR---GEI----DRARNVYE 218 (476)
Q Consensus 147 ~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~---g~~----~~A~~~~e 218 (476)
...++++++.+|.+ .+|...+.+....|.++++...+.+++..+|.+..+|...+...... |.. +.+.....
T Consensus 128 l~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~ 207 (320)
T PLN02789 128 LEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI 207 (320)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence 99999999999987 89999999999999999999999999999999999999998777655 323 46778888
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHHH
Q 039282 219 RALEKKLADGDGDDDEGAEQLFVAFAEF 246 (476)
Q Consensus 219 ~al~~~~p~~~~~~~~~~~~l~~~~a~~ 246 (476)
++|.. .| .+...|.....+
T Consensus 208 ~aI~~-~P--------~N~SaW~Yl~~l 226 (320)
T PLN02789 208 DAILA-NP--------RNESPWRYLRGL 226 (320)
T ss_pred HHHHh-CC--------CCcCHHHHHHHH
Confidence 99999 88 555666555544
No 78
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.42 E-value=6.7e-12 Score=108.16 Aligned_cols=122 Identities=11% Similarity=-0.010 Sum_probs=107.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 039282 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLP 124 (476)
Q Consensus 45 ~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p 124 (476)
...|+++++.+|++ +..+|......|++++|...|.+++..+|.+..+|..++.++...|+++.|...|++++...|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46788999888875 667888889999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Q 039282 125 HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKF 169 (476)
Q Consensus 125 ~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~ 169 (476)
.++..|+.++.++...|++++|+..|.+++...|++ ..|...+..
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999986 455444443
No 79
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=7e-11 Score=120.12 Aligned_cols=243 Identities=17% Similarity=0.187 Sum_probs=185.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELALEE--------DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVL--- 123 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~--------~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~--- 123 (476)
.|.-......++..+..+|+++.|...|++|+.. +|.-......++.+++..+++.+|..+|++|+.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4666777788999999999999999999999987 44444555569999999999999999999999763
Q ss_pred -----CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------H---HHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 039282 124 -----PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD------Q---QAWLSYIKFELRYEQVELARQVFERLVQC 189 (476)
Q Consensus 124 -----p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~------~---~~w~~~~~~~~~~g~~~~A~~~~~r~l~~ 189 (476)
|....+...++.++...|.+++|...+++++.+.-. . ......+..+...++++.|..++.+++..
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i 354 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI 354 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 456778889999999999999999999999876321 1 45667777788889999999999998875
Q ss_pred C--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHH
Q 039282 190 H--------PNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALR 259 (476)
Q Consensus 190 ~--------p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~e 259 (476)
. |.-+.+..+++.++...|++++|+++|++||.. ...............+...+..+.+.+.+..| .|+
T Consensus 355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~-~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~ 433 (508)
T KOG1840|consen 355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI-LRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE 433 (508)
T ss_pred HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH-HHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence 3 233678999999999999999999999999998 42111111123344555666666777777766 222
Q ss_pred ------HHhCC-hHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhc
Q 039282 260 ------KEFGD-WVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVER 307 (476)
Q Consensus 260 ------k~~g~-~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~ 307 (476)
+.+|. .+++...+. .++-.|...|+++.|.++-++++..
T Consensus 434 ~~~~i~~~~g~~~~~~~~~~~---------nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 434 EAKDIMKLCGPDHPDVTYTYL---------NLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHHHhCCCCCchHHHHH---------HHHHHHHHcccHHHHHHHHHHHHHH
Confidence 33442 223333333 6788899999999999999998743
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.41 E-value=9.7e-10 Score=110.70 Aligned_cols=183 Identities=14% Similarity=0.159 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.|......+++.++.+..+|--+|-++....++++|+++|..||.+.|+|..+|..++.+....++++-....-.+.++.
T Consensus 59 ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql 138 (700)
T KOG1156|consen 59 EAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL 138 (700)
T ss_pred HHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 55555666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Q 039282 123 LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT---PDQ------QAWLSYIKFELRYEQVELARQVFERLVQCHPNV 193 (476)
Q Consensus 123 ~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~---P~~------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~ 193 (476)
.|+.-..|..++......|++..|..+.+...+.. |+. .....-.......|..+.|.+.+...-...-+.
T Consensus 139 ~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dk 218 (700)
T KOG1156|consen 139 RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDK 218 (700)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHH
Confidence 77777777777777777777777776665554443 432 112222222233333333333332221111112
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 194 VSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 194 ~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
...-..-+.++...|++++|..+|...+.. +|
T Consensus 219 la~~e~ka~l~~kl~~lEeA~~~y~~Ll~r-nP 250 (700)
T KOG1156|consen 219 LAFEETKADLLMKLGQLEEAVKVYRRLLER-NP 250 (700)
T ss_pred HHHhhhHHHHHHHHhhHHhHHHHHHHHHhh-Cc
Confidence 233344456666667777777777777776 66
No 81
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.38 E-value=2.2e-11 Score=110.68 Aligned_cols=119 Identities=16% Similarity=0.194 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE-MINKF--INHARNVWDR 118 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e-~~~~~--~~~A~~~~~r 118 (476)
..+...++++|..+|.+...|..+|.++...|+++.|...|++++.++|+++.++..++.+. ...|+ .+.|+.++++
T Consensus 56 ~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~ 135 (198)
T PRK10370 56 EAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDK 135 (198)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 36678889999999999999999999999999999999999999999999999999999864 66676 5899999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
++...|++...++.++..+...|+++.|+..++++++..|..
T Consensus 136 al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 136 ALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999998875
No 82
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.37 E-value=2.8e-09 Score=106.33 Aligned_cols=180 Identities=14% Similarity=0.037 Sum_probs=133.9
Q ss_pred HHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGD---TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI----NKFINHARNV 115 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~---~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~----~~~~~~A~~~ 115 (476)
.+...+.+.....|.+ .+.....+......|++++|..++++++..+|.+..+|.. +..... .+....+...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~ 102 (355)
T cd05804 24 AAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARV 102 (355)
T ss_pred hHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHH
Confidence 4456666666666644 4556666777788889999999999999889988877763 333222 3445555555
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Q 039282 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 116 ~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
+.......|.....+..++.++...|+++.|...+++++...|++ ..+..++.++...|++++|...+++++...|.++
T Consensus 103 l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~ 182 (355)
T cd05804 103 LPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS 182 (355)
T ss_pred HhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence 555444556666666677778888899999999999999988886 6677888888888999999999999888776432
Q ss_pred ----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 195 ----SSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 195 ----~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
..|..++.++...|++++|..+|++++..
T Consensus 183 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 183 MLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred chhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 35667888888999999999999988765
No 83
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.36 E-value=2.2e-11 Score=104.91 Aligned_cols=125 Identities=9% Similarity=-0.076 Sum_probs=113.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 039282 79 RSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP 158 (476)
Q Consensus 79 ~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P 158 (476)
..+|++++.++|++ +...+......|+++.|...|++++...|.+..+|..++.++...|+++.|...|.+++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p 89 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA 89 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 46899999999875 667888899999999999999999999999999999999999999999999999999999999
Q ss_pred CH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039282 159 DQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR 206 (476)
Q Consensus 159 ~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~ 206 (476)
++ ..|..++..+...|++++|+..|++++...|+++..|...+.....
T Consensus 90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 76 8899999999999999999999999999999999988777666543
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.31 E-value=2.3e-09 Score=109.97 Aligned_cols=291 Identities=16% Similarity=0.095 Sum_probs=193.2
Q ss_pred CChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHcCCHH
Q 039282 32 VDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEE-DCRNHTLWCKYAEFEMINKFIN 110 (476)
Q Consensus 32 ~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~-~p~~~~lw~~y~~~e~~~~~~~ 110 (476)
....+-..++.++...+|+++..+|+|+.+-+.++..+..+++++.|.....++|.+ ...++..|..++-+....+++.
T Consensus 451 ~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 451 NLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence 445555567789999999999999999999999999999999999999999999999 5567899999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CHHHHHHHHH-------HHHHhhhHHHHH
Q 039282 111 HARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP---DQQAWLSYIK-------FELRYEQVELAR 180 (476)
Q Consensus 111 ~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P---~~~~w~~~~~-------~~~~~g~~~~A~ 180 (476)
+|..+.+-++...|.+..+-..-+.++...++.+.+.......+..-- ....-..-+. +....++...|.
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 999999999999998777666666677677777776666555443211 0000000000 000001111111
Q ss_pred HHHHHHHH-------------------hCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChh
Q 039282 181 QVFERLVQ-------------------CHPN-------VVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDE 234 (476)
Q Consensus 181 ~~~~r~l~-------------------~~p~-------~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~ 234 (476)
+.+.++.. .-|. ....|...+......+..+.|+....++-.. +|
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~-------- 681 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DP-------- 681 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-ch--------
Confidence 11111110 0011 1245555666666666666666666666555 55
Q ss_pred hHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCch----hhHHHHHHcCCHHH--HHHHHHHHHh
Q 039282 235 GAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDK----AYIHFEKSQGERER--RRALYERLVE 306 (476)
Q Consensus 235 ~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~----~~~~~~~~~g~~e~--Ar~l~e~~l~ 306 (476)
....+|..-+...+..|..++| .|-..+ .+.|.+. +.+.++.+.|+..- +|.+...++.
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al-------------~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVAL-------------ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHH-------------hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 4555555555555555555554 222111 1222221 55566667776544 4559999999
Q ss_pred ccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 307 RTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 307 ~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
..| +.+.|..++..-... |+...| -..|.-|++.-..+
T Consensus 749 ~dp~n~eaW~~LG~v~k~~--------------------Gd~~~A---------------------aecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKL--------------------GDSKQA---------------------AECFQAALQLEESN 787 (799)
T ss_pred hCCCCHHHHHHHHHHHHHc--------------------cchHHH---------------------HHHHHHHHhhccCC
Confidence 999 899999999998888 888899 88888888765443
No 85
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=8e-10 Score=106.74 Aligned_cols=222 Identities=12% Similarity=0.073 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 039282 74 EFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRW 153 (476)
Q Consensus 74 ~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~era 153 (476)
++..|.+.-..|+.++-.|+.+...-+.+-..+|++++|.+.|..||..+..+.+..+..+..+..+|+.++|..+|-+.
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 45555555555555555555555555555555555555555555555555555555555555555555555555555543
Q ss_pred HhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCC
Q 039282 154 MHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDD 232 (476)
Q Consensus 154 l~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~ 232 (476)
-.+.-++ .+....+.++.-..+..+|++++-++..+.|+++.++.+++.+|-+.|+...|...+-..-.. +|
T Consensus 551 h~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp------ 623 (840)
T KOG2003|consen 551 HAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FP------ 623 (840)
T ss_pred HHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cC------
Confidence 3222222 444455555555555555555555555555555555555555555555555555544444444 44
Q ss_pred hhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCCHH
Q 039282 233 DEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLK 312 (476)
Q Consensus 233 ~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~ 312 (476)
.+.. +|. -++.+|....=+++|+..|+++.-..|+..
T Consensus 624 --~nie--------------------------------~ie---------wl~ayyidtqf~ekai~y~ekaaliqp~~~ 660 (840)
T KOG2003|consen 624 --CNIE--------------------------------TIE---------WLAAYYIDTQFSEKAINYFEKAALIQPNQS 660 (840)
T ss_pred --cchH--------------------------------HHH---------HHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence 1111 111 233455566667899999999998899888
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 313 VWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 313 vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
-|..++.-..+. .|++.+| -.+|....+.||.+
T Consensus 661 kwqlmiasc~rr-------------------sgnyqka---------------------~d~yk~~hrkfped 693 (840)
T KOG2003|consen 661 KWQLMIASCFRR-------------------SGNYQKA---------------------FDLYKDIHRKFPED 693 (840)
T ss_pred HHHHHHHHHHHh-------------------cccHHHH---------------------HHHHHHHHHhCccc
Confidence 888776544433 3899999 88888887777765
No 86
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=1.2e-10 Score=99.10 Aligned_cols=116 Identities=16% Similarity=0.106 Sum_probs=108.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 039282 46 NDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH 125 (476)
Q Consensus 46 ~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~ 125 (476)
..|++++..+|.+......++..+...|++++|...|++++..+|.++.+|..++.++...|++..|..+|++++...|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHH
Q 039282 126 VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ 161 (476)
Q Consensus 126 ~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~ 161 (476)
++.+|+.++.++...|+++.|...|+++++.+|+..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 999999999999999999999999999999999864
No 87
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=99.29 E-value=2.3e-08 Score=98.28 Aligned_cols=143 Identities=24% Similarity=0.403 Sum_probs=121.6
Q ss_pred CCCCChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHHh
Q 039282 29 QKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNE--------------------FDRARSMWELALEE 88 (476)
Q Consensus 29 ~~i~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~--------------------~~~A~~~~eral~~ 88 (476)
..|=..+|+.+.. +.|..||--|.+-.....-++.|++.+..... ..+...+|.+|+..
T Consensus 22 ~giFt~dEi~~Iv-k~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~r 100 (568)
T KOG2396|consen 22 KGIFTRDEIREIV-KKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNR 100 (568)
T ss_pred cCCCCHHHHHHHH-HHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHh
Confidence 4577788999988 66677777777666678888999988865321 23566789999999
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCH-HHHHHH
Q 039282 89 DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG-NVAAARLIFDRWMHWTPDQ-QAWLSY 166 (476)
Q Consensus 89 ~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g-~~~~A~~~~eral~~~P~~-~~w~~~ 166 (476)
.+.++.+|..|+.+..+.+.+....++|.+++..+|+++.+|...+..+...+ |++.||.+|-++|+.+|++ .+|..|
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999886655 5999999999999999986 889999
Q ss_pred HHHHHH
Q 039282 167 IKFELR 172 (476)
Q Consensus 167 ~~~~~~ 172 (476)
.+++..
T Consensus 181 frmEL~ 186 (568)
T KOG2396|consen 181 FRMELM 186 (568)
T ss_pred HHHHHH
Confidence 887753
No 88
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.29 E-value=1.3e-09 Score=102.28 Aligned_cols=155 Identities=17% Similarity=0.146 Sum_probs=127.1
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH---
Q 039282 87 EEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD---QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ--- 160 (476)
Q Consensus 87 ~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~---~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~--- 160 (476)
.+++..+..++..+..+...|+++.|...|++++...|.++ ..|+..+.++...|+++.|+..|+++++..|++
T Consensus 27 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 27 PVEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred CcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 35566789999999999999999999999999999999865 688999999999999999999999999999975
Q ss_pred -HHHHHHHHHHHHh--------hhHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHHH
Q 039282 161 -QAWLSYIKFELRY--------EQVELARQVFERLVQCHPNVVSSW-----------------IKYAKFEMRRGEIDRAR 214 (476)
Q Consensus 161 -~~w~~~~~~~~~~--------g~~~~A~~~~~r~l~~~p~~~~~w-----------------~~~a~~~~~~g~~~~A~ 214 (476)
..|...+..+... |+++.|...|++++..+|++...+ ..++.++...|++..|.
T Consensus 107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 2566666666654 889999999999999999976543 34577788899999999
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHH
Q 039282 215 NVYERALEKKLADGDGDDDEGAEQLFVAFAEFE 247 (476)
Q Consensus 215 ~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e 247 (476)
..|+++++. +| +.......+...+..+
T Consensus 187 ~~~~~al~~-~p-----~~~~~~~a~~~l~~~~ 213 (235)
T TIGR03302 187 NRFETVVEN-YP-----DTPATEEALARLVEAY 213 (235)
T ss_pred HHHHHHHHH-CC-----CCcchHHHHHHHHHHH
Confidence 999999998 87 3223344444444433
No 89
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.28 E-value=3.4e-10 Score=120.48 Aligned_cols=155 Identities=12% Similarity=0.047 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.+........+..|.+.+....+|....+.|..++|..++++++...|++..++..++.++.+.+.+++|+..+++++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~ 149 (694)
T PRK15179 70 AALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG 149 (694)
T ss_pred hhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence 44555566778889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Q 039282 123 LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSW 197 (476)
Q Consensus 123 ~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w 197 (476)
.|++....+.++.+....|.+++|..+|++++..+|+. .+|..++..+...|+.+.|...|++++....+-...+
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 99999999999999999999999999999999988874 8999999999999999999999999998876534433
No 90
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.28 E-value=1.4e-10 Score=105.45 Aligned_cols=120 Identities=9% Similarity=0.145 Sum_probs=94.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH-HHhhh--HHHHHH
Q 039282 106 NKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFE-LRYEQ--VELARQ 181 (476)
Q Consensus 106 ~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~-~~~g~--~~~A~~ 181 (476)
.++.+.+...+++++...|++...|..++.++...|+++.|...|++++...|++ .++..++..+ ...|+ .++|+.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4556777777777777777777788888877777778888888888888777765 6777777753 56565 478888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 182 VFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 182 ~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
++++++..+|+++.++..+|..+...|++++|...|+++++. .|
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~ 175 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NS 175 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CC
Confidence 888888888888888888888888888888888888888888 77
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.27 E-value=8.2e-09 Score=104.14 Aligned_cols=156 Identities=12% Similarity=0.170 Sum_probs=107.6
Q ss_pred hHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 039282 34 PTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHAR 113 (476)
Q Consensus 34 ~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~ 113 (476)
.-|.++|. +..+..+..|++.|.+.+..-..|..+-..|+.++|......++..++.++.-|.-+|-+....+.+++|.
T Consensus 17 ~yE~kQYk-kgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYK-KGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHH-hHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHH
Confidence 34555565 66666677777777777776666666666777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Q 039282 114 NVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCH 190 (476)
Q Consensus 114 ~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~ 190 (476)
..|..|+...|++.++|..++.+-.+.++++.....=.+.++..|.. ..|..++....-.|++..|..+.+...+..
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77777777777777777777777777777776666666666666665 456666666666666666666666665544
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.26 E-value=7e-10 Score=118.10 Aligned_cols=153 Identities=18% Similarity=0.202 Sum_probs=139.7
Q ss_pred CCHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 039282 73 NEFDRARSMWELAL---EEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLI 149 (476)
Q Consensus 73 ~~~~~A~~~~eral---~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~ 149 (476)
+.+..+...+-+++ .-.|.++.+...++.+....|.++.|..+++++++..|++..++..++..+.+.+.+++|+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~ 142 (694)
T PRK15179 63 AAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAE 142 (694)
T ss_pred hhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHH
Confidence 33334444444444 347888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 150 FDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 150 ~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
+++++...|++ .....++..+.+.|++++|..+|++++..+|+++.+|..++..+...|+.+.|...|++|++. ..
T Consensus 143 ~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~ 219 (694)
T PRK15179 143 IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IG 219 (694)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hC
Confidence 99999999997 778899999999999999999999999999999999999999999999999999999999998 66
No 93
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.25 E-value=9.5e-10 Score=100.07 Aligned_cols=179 Identities=13% Similarity=0.073 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.+...+-+....+|.+..+ ..++..+...|+-+.+..+...++..+|.+..+...++.....+|++..|...+.+++..
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 4555566777889999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039282 123 LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYA 201 (476)
Q Consensus 123 ~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a 201 (476)
.|++..+|...+..+.+.|+++.|+.-|.+++++.|.. .+..+++-.+.-.|+++.|+.++.++....+.+..+-.+++
T Consensus 130 ~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLA 209 (257)
T COG5010 130 APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLA 209 (257)
T ss_pred CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999999999999999999999999999976 77888888899999999999999999998887899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 039282 202 KFEMRRGEIDRARNVYERALE 222 (476)
Q Consensus 202 ~~~~~~g~~~~A~~~~e~al~ 222 (476)
......|+++.|..+-..-+.
T Consensus 210 l~~~~~g~~~~A~~i~~~e~~ 230 (257)
T COG5010 210 LVVGLQGDFREAEDIAVQELL 230 (257)
T ss_pred HHHhhcCChHHHHhhcccccc
Confidence 999999999999988776443
No 94
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.25 E-value=5.8e-09 Score=109.44 Aligned_cols=182 Identities=15% Similarity=0.110 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|-++++.+|.-..+|..+|.+|..-.|..+|+.+|.+|.++|+++...|-..++.+....+.+.|..+.-++-+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 56788899999999999999999999999988999999999999999999999999999999999999999999777777
Q ss_pred hCCC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 039282 122 VLPH--VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI 198 (476)
Q Consensus 122 ~~p~--~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~ 198 (476)
..|- ...-|...+-++...++...|..-|+.+++.+|.+ ..|..++..+.+.|.+..|..+|.++..+.|.+.-.-+
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~f 634 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRF 634 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHH
Confidence 6664 34568888888888999999999999999999987 99999999999999999999999999999999777777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 199 KYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 199 ~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.-+..+...|.+..|...++..+..
T Consensus 635 k~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 635 KEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8888899999999999999988876
No 95
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.25 E-value=2.5e-09 Score=103.38 Aligned_cols=172 Identities=20% Similarity=0.326 Sum_probs=132.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 039282 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD 127 (476)
Q Consensus 48 ~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~ 127 (476)
+..-++.||.|+..|..+++.+..++..+.-|++|++.+.-.|-.+.+|..|+.-++..+++.....+|-|||...-+ .
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-l 109 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-L 109 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-H
Confidence 456688999999999999999999999999999999999999999999999999999999999999999999987554 8
Q ss_pred HHHHHHHHHHHHhCCHH--HHHHHHHHH----Hh---cCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Q 039282 128 QLWYKYIRMEEIAGNVA--AARLIFDRW----MH---WTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSW 197 (476)
Q Consensus 128 ~lw~~~~~~~~~~g~~~--~A~~~~era----l~---~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w 197 (476)
.+|..|+.+-.+.++.- .+|...-++ +. .+|.. ..|..|+.|.. .|
T Consensus 110 dLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle------------------------~~ 165 (660)
T COG5107 110 DLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLE------------------------YI 165 (660)
T ss_pred hHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHH------------------------hc
Confidence 99999999887765321 233332222 22 23332 56666666532 22
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccch
Q 039282 198 IKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKES 253 (476)
Q Consensus 198 ~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~ 253 (476)
-.++.++ ++.+++..|..|.+|+.. +..+...+|..|-.|+...+..
T Consensus 166 ~~~~kwE-eQqrid~iR~~Y~ral~t--------P~~nleklW~dy~~fE~e~N~~ 212 (660)
T COG5107 166 EELGKWE-EQQRIDKIRNGYMRALQT--------PMGNLEKLWKDYENFELELNKI 212 (660)
T ss_pred cccccHH-HHHHHHHHHHHHHHHHcC--------ccccHHHHHHHHHHHHHHHHHH
Confidence 2233444 455889999999999998 3457899999999998876543
No 96
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=5.2e-09 Score=100.30 Aligned_cols=267 Identities=12% Similarity=0.094 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..+...|+++.-.+|.++..--.||.++...|+.++--.+-.+.+.++.....-|+--+......+++..|..+-++++.
T Consensus 249 ~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~ 328 (564)
T KOG1174|consen 249 FQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID 328 (564)
T ss_pred hHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 57889999999999999999999999999999999999999999999877888899999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~ 200 (476)
.+|++.+.+..-+.+....|..+.|.-.|+.+..+.|.. +.+..++..+...|.+.+|...-...+...|.+..+...+
T Consensus 329 ~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~ 408 (564)
T KOG1174|consen 329 SEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLF 408 (564)
T ss_pred cCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 999999999999999999999999999999999999876 7888888888889999999988888888889888887777
Q ss_pred H-HHHH-HcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhcc
Q 039282 201 A-KFEM-RRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKG 276 (476)
Q Consensus 201 a-~~~~-~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~ 276 (476)
+ ..+. .-.--++|..++++++.. .| .........+.++...|.++.+ ..++.+-+-+
T Consensus 409 g~~V~~~dp~~rEKAKkf~ek~L~~-~P--------~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~---------- 469 (564)
T KOG1174|consen 409 GTLVLFPDPRMREKAKKFAEKSLKI-NP--------IYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP---------- 469 (564)
T ss_pred cceeeccCchhHHHHHHHHHhhhcc-CC--------ccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc----------
Confidence 5 3322 222347899999999998 77 4444556667777666666555 2232222111
Q ss_pred CCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCC
Q 039282 277 KAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSK 327 (476)
Q Consensus 277 ~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~ 327 (476)
-|..+..++++....+.+.+|.+.|..+|..+| +-..-..+-.+|.+..+.
T Consensus 470 D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~~~ 521 (564)
T KOG1174|consen 470 DVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDDES 521 (564)
T ss_pred ccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccCCC
Confidence 111122678899999999999999999999999 666777777788776443
No 97
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=1.5e-08 Score=94.50 Aligned_cols=210 Identities=17% Similarity=0.146 Sum_probs=166.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHH
Q 039282 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV-----DQLWYKYIRME 137 (476)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~-----~~lw~~~~~~~ 137 (476)
.+=.+++. .++.++|...|-..+..+|...++.+.++.++...|.++.|+++-+..+. .|+- ......++.=+
T Consensus 40 v~GlNfLL-s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~Dy 117 (389)
T COG2956 40 VKGLNFLL-SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRDY 117 (389)
T ss_pred HhHHHHHh-hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHHH
Confidence 33334444 35689999999999999999999999999999999999999999887665 4542 34566677778
Q ss_pred HHhCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCCHH
Q 039282 138 EIAGNVAAARLIFDRWMHWTP-DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNV-----VSSWIKYAKFEMRRGEID 211 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P-~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~-----~~~w~~~a~~~~~~g~~~ 211 (476)
...|-++.|..+|...+...- -..+...++.++....++++|+.+-++.++..|.. ...+..++..+....+.+
T Consensus 118 m~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d 197 (389)
T COG2956 118 MAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVD 197 (389)
T ss_pred HHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHH
Confidence 888999999999998875322 23788899999999999999999999999988863 345667777777778999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHc
Q 039282 212 RARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQ 291 (476)
Q Consensus 212 ~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 291 (476)
.|+.++.+|++. .| .+...-+ ..++++...
T Consensus 198 ~A~~~l~kAlqa-~~--------~cvRAsi-----------------------------------------~lG~v~~~~ 227 (389)
T COG2956 198 RARELLKKALQA-DK--------KCVRASI-----------------------------------------ILGRVELAK 227 (389)
T ss_pred HHHHHHHHHHhh-Cc--------cceehhh-----------------------------------------hhhHHHHhc
Confidence 999999999998 77 3322211 345666688
Q ss_pred CCHHHHHHHHHHHHhccC--CHHHHHHHHHHHhhc
Q 039282 292 GERERRRALYERLVERTK--HLKVWISYAKFEASA 324 (476)
Q Consensus 292 g~~e~Ar~l~e~~l~~~~--~~~vw~~~a~~e~~~ 324 (476)
|++..|.+.|+++++.+| -+.|-..+...+...
T Consensus 228 g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~l 262 (389)
T COG2956 228 GDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQL 262 (389)
T ss_pred cchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHh
Confidence 999999999999999998 456777777777777
No 98
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.1e-07 Score=95.18 Aligned_cols=387 Identities=13% Similarity=0.071 Sum_probs=236.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 39 DYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDR 118 (476)
Q Consensus 39 e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~r 118 (476)
+|. +|.+...+.|...|++..+...-.-+.++.+.|+.|..+.+.-..+.-.+.- .+.-+.++.+.+..+.|...++
T Consensus 27 e~e-~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yrlnk~Dealk~~~- 103 (652)
T KOG2376|consen 27 EYE-EAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEYRLNKLDEALKTLK- 103 (652)
T ss_pred HHH-HHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHHcccHHHHHHHHh-
Confidence 454 8888899999999999999988888889999999999776664433333322 2666777889999999999998
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--------------------------------HHHHHHH
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD--------------------------------QQAWLSY 166 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~--------------------------------~~~w~~~ 166 (476)
.+.+.++.+....++++.++|++++|..+|+..++.+-+ .+...+-
T Consensus 104 --~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~ 181 (652)
T KOG2376|consen 104 --GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNT 181 (652)
T ss_pred --cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHH
Confidence 445666789999999999999999999999888654322 1334555
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCC----------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC
Q 039282 167 IKFELRYEQVELARQVFERLVQCHPN----------V-----VSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGD 231 (476)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~r~l~~~p~----------~-----~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~ 231 (476)
+..+...|++.+|.+++++++..+-. . ..+-..++-.+...|+..+|..+|...|.. .|
T Consensus 182 Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~-~~----- 255 (652)
T KOG2376|consen 182 ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR-NP----- 255 (652)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cC-----
Confidence 56667788899999998888543321 0 134556666677889999999999988888 55
Q ss_pred ChhhHHHHHHH-HHH---------------HHHHccchhHH-----------HHHH------HhCC-hHHHHHHHH-hcc
Q 039282 232 DDEGAEQLFVA-FAE---------------FEERYKESESE-----------ALRK------EFGD-WVLIEDAIV-GKG 276 (476)
Q Consensus 232 ~~~~~~~l~~~-~a~---------------~e~~~~~~e~A-----------~~ek------~~g~-~~~~~~~i~-~~~ 276 (476)
.+.....+... ... +...++....+ .|.. .|.+ ...+..... .-+
T Consensus 256 ~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~ 335 (652)
T KOG2376|consen 256 ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPG 335 (652)
T ss_pred CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc
Confidence 22111111110 000 00000000000 0000 0000 000111000 013
Q ss_pred CCCCch---hhHHHH-HHcCCHHHHHHHHHHHHhccC-C-HHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhh
Q 039282 277 KAPKDK---AYIHFE-KSQGERERRRALYERLVERTK-H-LKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGA 350 (476)
Q Consensus 277 ~~p~~~---~~~~~~-~~~g~~e~Ar~l~e~~l~~~~-~-~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 350 (476)
+.|... ...... .+...+.+|..++....+.+| + -.|-+..+++..+. |+++.|
T Consensus 336 ~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~--------------------gn~~~A 395 (652)
T KOG2376|consen 336 MSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQ--------------------GNPEVA 395 (652)
T ss_pred cCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhc--------------------CCHHHH
Confidence 333311 011111 112246667777777777777 3 45666777777776 888888
Q ss_pred hhhhhHHhHHHHhhhhc------------------------cCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 039282 351 RRSHRKIYHQFATCLIS------------------------SLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERS 406 (476)
Q Consensus 351 ~~~~~~~~~~~~~~~~~------------------------~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~ 406 (476)
.+++..++..|.+ -+.+.+++..|++......+.. .....+|..-..|+.+
T Consensus 396 ----~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s-~~l~~~~~~aa~f~lr 470 (652)
T KOG2376|consen 396 ----LEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGS-IALLSLMREAAEFKLR 470 (652)
T ss_pred ----HHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccc-hHHHhHHHHHhHHHHh
Confidence 8887766655544 3889999999999987653232 3345677778999999
Q ss_pred cCCHhhHHHHHhhCChh------hhhhccc-cCCCCCCCceEEeeeeecCCCCC-CcchHHHHH
Q 039282 407 FGELGDVNLVQAMLPKK------LKKRRQI-ASDNGLSAGYEEYIDYLFPEESQ-KTNFKILEA 462 (476)
Q Consensus 407 ~G~~~~~~~v~~~~p~~------~~~~~~~-~~~~~~~~~~~e~~~~~fp~~~~-~~~~~~~~~ 462 (476)
+|+.+.+..+...+-+. +--++.. ++-- +-...+.|--++||++.. ..++.=||.
T Consensus 471 ~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~~~l~~vdVd~LE~ 533 (652)
T KOG2376|consen 471 HGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKLPPLKGLKAVDVDALEK 533 (652)
T ss_pred cCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCcccchhcCchHhhh
Confidence 99987776666554331 1111111 0000 011357788899999754 234444443
No 99
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=9e-09 Score=93.00 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=164.7
Q ss_pred CCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHH
Q 039282 72 QNEFDRARSMWELALEEDCR---NHTLWCKYAEFE---MINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAA 145 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~---~~~lw~~y~~~e---~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~ 145 (476)
..+.++..+++...+.-.+. -...|..|-++. +..|...-|..++++.-...|.+..+-...+..++..|++++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 45667777777777754433 357788777754 457899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Q 039282 146 ARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKK 224 (476)
Q Consensus 146 A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~ 224 (476)
|.++|++.+.-+|.+ .+...-+.+....|+.-.|+.-+..+++.+|++.++|..++.+|...|++.+|.-.|+.++-.
T Consensus 105 A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~- 183 (289)
T KOG3060|consen 105 AIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI- 183 (289)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc-
Confidence 999999999999987 455666677778899899999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHH
Q 039282 225 LADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERL 304 (476)
Q Consensus 225 ~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~ 304 (476)
.| ..+.+|..+++.....| ...+++-||++|+++
T Consensus 184 ~P--------~n~l~f~rlae~~Yt~g--------------------------------------g~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 184 QP--------FNPLYFQRLAEVLYTQG--------------------------------------GAENLELARKYYERA 217 (289)
T ss_pred CC--------CcHHHHHHHHHHHHHHh--------------------------------------hHHHHHHHHHHHHHH
Confidence 88 67778888887654332 134567799999999
Q ss_pred HhccC-CHHHHH
Q 039282 305 VERTK-HLKVWI 315 (476)
Q Consensus 305 l~~~~-~~~vw~ 315 (476)
++.+| +..-|.
T Consensus 218 lkl~~~~~ral~ 229 (289)
T KOG3060|consen 218 LKLNPKNLRALF 229 (289)
T ss_pred HHhChHhHHHHH
Confidence 99998 544443
No 100
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.20 E-value=5e-09 Score=101.33 Aligned_cols=205 Identities=12% Similarity=0.050 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.|...-..+|..++.|..+...-+.....+||+++|...|..||.-+...+.+.+..+......|+.++|...|-+.-.+
T Consensus 474 ~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i 553 (840)
T KOG2003|consen 474 DAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI 553 (840)
T ss_pred HHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH
Confidence 45566677777888888888888887778888888888888888877778888888888888888888888888887777
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039282 123 LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYA 201 (476)
Q Consensus 123 ~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a 201 (476)
.-++.++.+.++.+++.+.+...|++++.++...-|.+ .+...++.++-+.|+-.+|..++-.....+|.+.++.--++
T Consensus 554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHH
Confidence 77778888888888888888888888888888887764 66777778888888888887777777777787777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 202 KFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 202 ~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
.+|....-.++|...|++|.-. -| +...--...+.++.+.|+|.+|
T Consensus 634 ayyidtqf~ekai~y~ekaali-qp--------~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALI-QP--------NQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhc-Cc--------cHHHHHHHHHHHHHhcccHHHH
Confidence 7777777777888888887666 55 3333334456677777888777
No 101
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.20 E-value=5.1e-09 Score=112.57 Aligned_cols=236 Identities=12% Similarity=0.060 Sum_probs=154.4
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 039282 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYK 132 (476)
Q Consensus 53 ~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~ 132 (476)
..+|.+..+|..++..+...+++++|..+.+.++..+|+.+.+|+..|-++...++++.+..+ +++...+.+.
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~----- 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNL----- 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccccc-----
Confidence 346899999999999999999999999999999999999999999999999999998888777 7777666532
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 039282 133 YIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEID 211 (476)
Q Consensus 133 ~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~ 211 (476)
++. +...|...+...|.+ .+...++.++.+.|+.++|..+|++++..+|+++.+..+||.++... +++
T Consensus 98 ---------~~~-~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 98 ---------KWA-IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred ---------chh-HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHH
Confidence 221 222222222223333 46677777777888888888888888888888888888888888777 888
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhhH---HHHHHHHHHHHHHccchhHHHHHHHhCC---hHHHHHHHHhccCCCCchhhH
Q 039282 212 RARNVYERALEKKLADGDGDDDEGA---EQLFVAFAEFEERYKESESEALRKEFGD---WVLIEDAIVGKGKAPKDKAYI 285 (476)
Q Consensus 212 ~A~~~~e~al~~~~p~~~~~~~~~~---~~l~~~~a~~e~~~~~~e~A~~ek~~g~---~~~~~~~i~~~~~~p~~~~~~ 285 (476)
+|+..+.+|+.. +- +.... ..+|..+....-..+++=--..++..+. ...+.-++ -+-
T Consensus 167 KA~~m~~KAV~~-~i-----~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~----------~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR-FI-----KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLE----------DLY 230 (906)
T ss_pred HHHHHHHHHHHH-HH-----hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHH----------HHH
Confidence 888888888876 33 11122 2333333322111111000000111111 01111110 122
Q ss_pred HHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHh
Q 039282 286 HFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEA 322 (476)
Q Consensus 286 ~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~ 322 (476)
..+...++|+++..++.++|+..| +...-..++..+.
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 455677889999999999999988 5544555555444
No 102
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=5.8e-09 Score=106.24 Aligned_cols=252 Identities=13% Similarity=0.135 Sum_probs=182.1
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHh----
Q 039282 123 LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW--------TPDQ-QAWLSYIKFELRYEQVELARQVFERLVQC---- 189 (476)
Q Consensus 123 ~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~--------~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~---- 189 (476)
.|........++.++...|+++.|..+|+++++. +|.- .....++.++...+++.+|..+|++++..
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4666677777999999999999999999999988 5544 45567999999999999999999999973
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH---------
Q 039282 190 ----HPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--------- 256 (476)
Q Consensus 190 ----~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--------- 256 (476)
+|..+.++.+++.+|...|++++|...+++|++. .......+.......+...+..+...++++.|
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I-~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI-YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH-HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 5666778999999999999999999999999987 32100112224456677777788888999988
Q ss_pred HHHHHhCChH-HHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC------CH---HHHHHHHHHHhhcCC
Q 039282 257 ALRKEFGDWV-LIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK------HL---KVWISYAKFEASALS 326 (476)
Q Consensus 257 ~~ek~~g~~~-~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~------~~---~vw~~~a~~e~~~~~ 326 (476)
++.+.+|... .+...-. .++.++...|++++|+.+|++++.+.. +. .....++..+...
T Consensus 354 i~~~~~g~~~~~~a~~~~---------nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~-- 422 (508)
T KOG1840|consen 354 IYLDAPGEDNVNLAKIYA---------NLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEEL-- 422 (508)
T ss_pred HHHhhccccchHHHHHHH---------HHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHh--
Confidence 3344444433 2332222 678889999999999999999998751 22 2333344433443
Q ss_pred CCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHh
Q 039282 327 KDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERS 406 (476)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~ 406 (476)
+++..| -.+|.++....+...|+. .+-...+......+..
T Consensus 423 ------------------k~~~~a---------------------~~l~~~~~~i~~~~g~~~-~~~~~~~~nL~~~Y~~ 462 (508)
T KOG1840|consen 423 ------------------KKYEEA---------------------EQLFEEAKDIMKLCGPDH-PDVTYTYLNLAALYRA 462 (508)
T ss_pred ------------------cccchH---------------------HHHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHHH
Confidence 677888 888888877763332211 1224556666677888
Q ss_pred cCCHhhHHHHHhhCChhhhh
Q 039282 407 FGELGDVNLVQAMLPKKLKK 426 (476)
Q Consensus 407 ~G~~~~~~~v~~~~p~~~~~ 426 (476)
.|+.+.+..+..++-+..+.
T Consensus 463 ~g~~e~a~~~~~~~~~~~~~ 482 (508)
T KOG1840|consen 463 QGNYEAAEELEEKVLNAREQ 482 (508)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 99999999988876654443
No 103
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.19 E-value=8e-09 Score=96.90 Aligned_cols=237 Identities=14% Similarity=0.114 Sum_probs=183.5
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 039282 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKY 133 (476)
Q Consensus 54 ~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~ 133 (476)
.+|.++.-.+.++.-.+..|++..|...|-.|++.+|++..+.++-+.+++..|....|..-+.+.+++-|+-...-..-
T Consensus 33 ~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 33 ASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 46778889999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCH----H----------HHHH--HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Q 039282 134 IRMEEIAGNVAAARLIFDRWMHWTPDQ----Q----------AWLS--YIKFELRYEQVELARQVFERLVQCHPNVVSSW 197 (476)
Q Consensus 134 ~~~~~~~g~~~~A~~~~eral~~~P~~----~----------~w~~--~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w 197 (476)
+.++..+|.++.|..-|...|..+|++ . .|.. .+.-....|+...|+......+...|-++.++
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 999999999999999999999999963 1 1222 22223455899999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccC
Q 039282 198 IKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGK 277 (476)
Q Consensus 198 ~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~ 277 (476)
..-+..+...|+...|+.-...+-.. -. ++...+...+.++...|+.+.+. ..|.+.+ .+
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askL-s~--------DnTe~~ykis~L~Y~vgd~~~sL--------~~iRECL---Kl 252 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKL-SQ--------DNTEGHYKISQLLYTVGDAENSL--------KEIRECL---KL 252 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhc-cc--------cchHHHHHHHHHHHhhhhHHHHH--------HHHHHHH---cc
Confidence 99999999999999999888877665 33 33344555555555555544430 0011111 12
Q ss_pred CCCch--------------hhH--HHHHHcCCHHHHHHHHHHHHhccCC
Q 039282 278 APKDK--------------AYI--HFEKSQGERERRRALYERLVERTKH 310 (476)
Q Consensus 278 ~p~~~--------------~~~--~~~~~~g~~e~Ar~l~e~~l~~~~~ 310 (476)
.|.++ .+- .-..+.++|.++.+.+++.++..|.
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 22222 111 1123567788888888888888773
No 104
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.19 E-value=8.1e-08 Score=98.90 Aligned_cols=172 Identities=14% Similarity=0.106 Sum_probs=107.3
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHH
Q 039282 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVL--PHVDQLWY 131 (476)
Q Consensus 54 ~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~--p~~~~lw~ 131 (476)
...++..+|-.+.-.....|+++.+.+.||+++-..-.....|..++..+...|.-.+|.++++..+... |.++....
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3345667777777777777778888888888777666677778877777777777777777777777776 54333333
Q ss_pred HHHH-HHHHhCCHHH--------------------------------------------------HHHHHHHHHhcCCCH
Q 039282 132 KYIR-MEEIAGNVAA--------------------------------------------------ARLIFDRWMHWTPDQ 160 (476)
Q Consensus 132 ~~~~-~~~~~g~~~~--------------------------------------------------A~~~~eral~~~P~~ 160 (476)
.... +....+.+++ +.+.++++++.+|.+
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2222 2233444444 444455555555544
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 161 -QAWLSYIKFELRYEQVELARQVFERLVQCHP-NVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 161 -~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p-~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.+...++-.+...++++.|....++++...+ +++..|..++.+....+++..|..+.+-++.. .|
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E-~~ 544 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE-FG 544 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-hh
Confidence 3334444445555666666666666666633 34666666666666666666666666666666 55
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=1.2e-07 Score=97.78 Aligned_cols=256 Identities=14% Similarity=0.177 Sum_probs=178.7
Q ss_pred HHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----CCH
Q 039282 35 TELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMIN-----KFI 109 (476)
Q Consensus 35 eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~-----~~~ 109 (476)
+|.++++ +|.+.++..-..-++.....-..|.++...|+.++|..+|...|..+|+|...+..+..+.... .+.
T Consensus 15 ~e~g~~~-~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~ 93 (517)
T PF12569_consen 15 EEAGDYE-EALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDV 93 (517)
T ss_pred HHCCCHH-HHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccH
Confidence 4455565 8888888888877888888889999999999999999999999999999998888888876322 356
Q ss_pred HHHHHHHHHHHHhCCCcHH----------------HHHHHHHHHHHhC----------------CHHHHHHHHHHHHhc-
Q 039282 110 NHARNVWDRAVAVLPHVDQ----------------LWYKYIRMEEIAG----------------NVAAARLIFDRWMHW- 156 (476)
Q Consensus 110 ~~A~~~~~ral~~~p~~~~----------------lw~~~~~~~~~~g----------------~~~~A~~~~eral~~- 156 (476)
.....+|+..-...|++.. ....|+.-....| .......++...+..
T Consensus 94 ~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l 173 (517)
T PF12569_consen 94 EKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSL 173 (517)
T ss_pred HHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhh
Confidence 7778888888777776311 1112222222222 112222333332211
Q ss_pred ---------------CCCHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 157 ---------------TPDQQAWLSY--IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219 (476)
Q Consensus 157 ---------------~P~~~~w~~~--~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~ 219 (476)
.|..-+|..| +..+...|++++|....++++...|+.++.++.-|.++.+.|++..|...++.
T Consensus 174 ~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~ 253 (517)
T PF12569_consen 174 ESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDE 253 (517)
T ss_pred cccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1233457554 77788999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH-----HHHHHh-CChHHHHH---HHHhccCCCCchhhHHHHHH
Q 039282 220 ALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE-----ALRKEF-GDWVLIED---AIVGKGKAPKDKAYIHFEKS 290 (476)
Q Consensus 220 al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A-----~~ek~~-g~~~~~~~---~i~~~~~~p~~~~~~~~~~~ 290 (476)
|-.. .+ .+.-+=...+....+.|+++.| .|-+.- +....+.+ +.... ..+..+.+
T Consensus 254 Ar~L-D~--------~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~-------e~a~a~~r 317 (517)
T PF12569_consen 254 AREL-DL--------ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFET-------ECAEAYLR 317 (517)
T ss_pred HHhC-Ch--------hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHH-------HHHHHHHH
Confidence 9888 44 3444556678888999999998 232211 01111111 11000 34566678
Q ss_pred cCCHHHHHHHHHHHHhc
Q 039282 291 QGERERRRALYERLVER 307 (476)
Q Consensus 291 ~g~~e~Ar~l~e~~l~~ 307 (476)
.|++..|.+-|....+.
T Consensus 318 ~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKH 334 (517)
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 89999999999888765
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.18 E-value=2.2e-08 Score=99.91 Aligned_cols=253 Identities=12% Similarity=-0.013 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGS----QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~----~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
.++...+++++..+|.+...|.. +..+.. .+....+...++.....+|.....+..++.++...|+++.|...++
T Consensus 60 ~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 138 (355)
T cd05804 60 PKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAAR 138 (355)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58899999999999999988773 333332 4555566666665445677777778888889999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-----QAWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
+++...|++..++..++.++...|++++|+..+.+++...|.. ..|..++.++...|++++|..+|++++...|.
T Consensus 139 ~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~ 218 (355)
T cd05804 139 RALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAE 218 (355)
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccC
Confidence 9999999999999999999999999999999999999987632 45778899999999999999999999876663
Q ss_pred C-HHHHH-HH---HHHHHHcCCHHHHHHH---HHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHh
Q 039282 193 V-VSSWI-KY---AKFEMRRGEIDRARNV---YERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEF 262 (476)
Q Consensus 193 ~-~~~w~-~~---a~~~~~~g~~~~A~~~---~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~ 262 (476)
. ..... .. .......|....+... ....... .+ . ..........+......|+.+.| ..+...
T Consensus 219 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~-~~-----~-~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~ 291 (355)
T cd05804 219 SDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWH-FP-----D-HGLAFNDLHAALALAGAGDKDALDKLLAALK 291 (355)
T ss_pred CChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhh-cC-----c-ccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 11111 11 1122233433333332 2222111 12 1 11112223566666777777766 111110
Q ss_pred C---C---hHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhcc
Q 039282 263 G---D---WVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERT 308 (476)
Q Consensus 263 g---~---~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~ 308 (476)
. . .......+.. ....+..+...|+++.|+.++..++...
T Consensus 292 ~~~~~~~~~~~~~~~~~~------~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 292 GRASSADDNKQPARDVGL------PLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHhccCchhhhHHhhhH------HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0 0 0000000000 0033345568999999999999998764
No 107
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.15 E-value=1.8e-09 Score=91.87 Aligned_cols=116 Identities=11% Similarity=0.043 Sum_probs=96.8
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 039282 80 SMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 80 ~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~ 159 (476)
..|++++..+|.+......++..+...|++..|...|++++...|.++.+|..++.++...|+++.|..+|++++...|.
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788888888888888888888888888888888888888888888888888888888888888888888888888886
Q ss_pred H-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Q 039282 160 Q-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVS 195 (476)
Q Consensus 160 ~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~ 195 (476)
+ ..+..++.++...|++++|...|++++..+|++..
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 5 67777788888888888888888888888887554
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.6e-08 Score=95.95 Aligned_cols=273 Identities=11% Similarity=0.039 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|..+|..+|.|.-.+..-...+...|+++.|.+--.+..+++|.-+..|.+.|......|+++.|+..|..+|.
T Consensus 19 ~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~ 98 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLE 98 (539)
T ss_pred HHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhh
Confidence 48899999999999999888888899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhC-----------------C----HHHHHHHHHH---HHhcCCCH-----------------
Q 039282 122 VLPHVDQLWYKYIRMEEIAG-----------------N----VAAARLIFDR---WMHWTPDQ----------------- 160 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g-----------------~----~~~A~~~~er---al~~~P~~----------------- 160 (476)
.+|++..+...+.+++.... + .......|.. .+...|.+
T Consensus 99 ~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l 178 (539)
T KOG0548|consen 99 KDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQL 178 (539)
T ss_pred cCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHH
Confidence 99999999998888873220 0 0001111111 11111110
Q ss_pred ----------------------------------------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Q 039282 161 ----------------------------------------------QAWLSYIKFELRYEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 161 ----------------------------------------------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
.....+++......+++.|...|..++.++ .+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~i 257 (539)
T KOG0548|consen 179 KGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDI 257 (539)
T ss_pred hcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhh
Confidence 012233344444457888889999999988 768
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHH-------HHHHccchhHH--HHHHHhCC-
Q 039282 195 SSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAE-------FEERYKESESE--ALRKEFGD- 264 (476)
Q Consensus 195 ~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~-------~e~~~~~~e~A--~~ek~~g~- 264 (476)
......+..+...|.+..++...+.+++. .. ....-+...+. .....+.++.+ .|++.+..
T Consensus 258 t~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gr--------e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~ 328 (539)
T KOG0548|consen 258 TYLNNIAAVYLERGKYAECIELCEKAVEV-GR--------ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH 328 (539)
T ss_pred HHHHHHHHHHHhccHHHHhhcchHHHHHH-hH--------HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence 88888899999999999999999988887 32 11111111222 22223444444 22222110
Q ss_pred --------hHHHHHHHHhc----cCCCCc----hhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 265 --------WVLIEDAIVGK----GKAPKD----KAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 265 --------~~~~~~~i~~~----~~~p~~----~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
....+.++... -+.|.- +.-+.-..+.|++..|...|.+++++.| +..++-+.+.-+...
T Consensus 329 Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 329 RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 01111111100 011110 0123334478999999999999999999 778888877777776
No 109
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=3.4e-08 Score=89.33 Aligned_cols=167 Identities=16% Similarity=0.135 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 039282 59 TAVWINYAKWEG---SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIR 135 (476)
Q Consensus 59 ~~~w~~~a~~~~---~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~ 135 (476)
.+.|.-|=++.+ ..|+..-|..++.+.....|.+..+-...+..+...|+++.|..+|++.+..+|.+..+...-+.
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlA 128 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLA 128 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHH
Confidence 567776666554 46899999999999999899999999999999999999999999999999999999888888888
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHH
Q 039282 136 MEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRG---EID 211 (476)
Q Consensus 136 ~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g---~~~ 211 (476)
+...+|..-.|++-+..-++..|.+ ++|..++.++...|++++|.-+|+..+-..|.++-.+..++..+.-.| ++.
T Consensus 129 ilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 129 ILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 8888898889999999988888865 999999999999999999999999999999999999999999887666 567
Q ss_pred HHHHHHHHHHHhhcC
Q 039282 212 RARNVYERALEKKLA 226 (476)
Q Consensus 212 ~A~~~~e~al~~~~p 226 (476)
.|+..|.++++. +|
T Consensus 209 ~arkyy~~alkl-~~ 222 (289)
T KOG3060|consen 209 LARKYYERALKL-NP 222 (289)
T ss_pred HHHHHHHHHHHh-Ch
Confidence 899999999999 66
No 110
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=5.6e-08 Score=95.66 Aligned_cols=194 Identities=16% Similarity=0.142 Sum_probs=151.8
Q ss_pred ccHHHH--HHHHhhccCCCCCCChHHhhHHHHHHHHHHHH----------HHHhCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 039282 13 KTAEQI--LRESQEHFGEQKSVDPTELYDYRLHKRNDFED----------SIRRVPGDTAVWINYAKWEGSQNEFDRARS 80 (476)
Q Consensus 13 i~a~q~--l~~a~~~~~~~~i~d~eel~e~~~~a~~~~e~----------~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~ 80 (476)
+|.+-| +++--+..|..+-.|..+..-+..+.+..|+- ....+|.....|+..|..+...|+++.|+.
T Consensus 248 lp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~ 327 (484)
T COG4783 248 LPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALK 327 (484)
T ss_pred CchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHH
Confidence 344444 44444446666667776666666555544432 222346777888888888888999999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 81 MWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 81 ~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
.+...+...|+|+-+|...+++.+..++..+|.+.+++++...|+..-+|..|++++...|++.+|+.++.+.+..+|++
T Consensus 328 ~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 328 LLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888876
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 161 -QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 161 -~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
..|..++..+...|+..+ ....++..+...|+++.|...+.++-+.
T Consensus 408 p~~w~~LAqay~~~g~~~~-----------------a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAE-----------------ALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHHHHHhCchHH-----------------HHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 778888888888886543 4455566667778888888888888777
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.04 E-value=3.9e-08 Score=105.92 Aligned_cols=257 Identities=9% Similarity=0.013 Sum_probs=177.2
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHH
Q 039282 87 EEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSY 166 (476)
Q Consensus 87 ~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~ 166 (476)
..+|.+..+|..++..+...+++++|..+.+.++...|+...+|+..+.++.+.++...+.-+ +++...+.+.-|
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~--- 99 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW--- 99 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch---
Confidence 567999999999999999999999999999999999999999999999999999987777666 666666554333
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHH
Q 039282 167 IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEF 246 (476)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~ 246 (476)
.+.+.|...+..+|.+-.++..+|.+|.+.|+.++|..+|+++++. .| .+..+...||.+
T Consensus 100 -----------~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~-D~--------~n~~aLNn~AY~ 159 (906)
T PRK14720 100 -----------AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA-DR--------DNPEIVKKLATS 159 (906)
T ss_pred -----------hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc-Cc--------ccHHHHHHHHHH
Confidence 2333344444456777789999999999999999999999999999 77 778889999998
Q ss_pred HHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcC
Q 039282 247 EERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASAL 325 (476)
Q Consensus 247 e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~ 325 (476)
+... ++++| ...+..++. .+...+++..+..+|++.+...| +.+....+..--...-
T Consensus 160 ~ae~-dL~KA--------~~m~~KAV~-------------~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~ 217 (906)
T PRK14720 160 YEEE-DKEKA--------ITYLKKAIY-------------RFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR 217 (906)
T ss_pred HHHh-hHHHH--------HHHHHHHHH-------------HHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence 8777 88887 122233332 23355689999999999999988 6666555444333220
Q ss_pred CCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHH
Q 039282 326 SKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMER 405 (476)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~ 405 (476)
...+.-....+.-+.....++++++ -.+|.+++.+.+.+ ...|..|...|..-+.
T Consensus 218 ~~~~~~~~~~~l~~~y~~~~~~~~~---------------------i~iLK~iL~~~~~n----~~a~~~l~~~y~~kY~ 272 (906)
T PRK14720 218 EFTRLVGLLEDLYEPYKALEDWDEV---------------------IYILKKILEHDNKN----NKAREELIRFYKEKYK 272 (906)
T ss_pred ccchhHHHHHHHHHHHhhhhhhhHH---------------------HHHHHHHHhcCCcc----hhhHHHHHHHHHHHcc
Confidence 0000000000000111112345555 88899988876654 2446667777763333
Q ss_pred hcCCHhhHHH
Q 039282 406 SFGELGDVNL 415 (476)
Q Consensus 406 ~~G~~~~~~~ 415 (476)
.|-..+...+
T Consensus 273 ~~~~~ee~l~ 282 (906)
T PRK14720 273 DHSLLEDYLK 282 (906)
T ss_pred CcchHHHHHH
Confidence 3333333333
No 112
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=7.9e-09 Score=96.47 Aligned_cols=127 Identities=17% Similarity=0.117 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK---FINHARNVWDRA 119 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~---~~~~A~~~~~ra 119 (476)
+...-.+..|..||+|.+.|..+|..++.+|++..|...|.+|+.+.|+|+.+|..|++.+.... ...++..+|+++
T Consensus 140 ~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a 219 (287)
T COG4235 140 ALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQA 219 (287)
T ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999876543 367899999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 039282 120 VAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKF 169 (476)
Q Consensus 120 l~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~ 169 (476)
+..+|.+....+.++.-+...|++..|...++..+...|.+..|...+.-
T Consensus 220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 99999999999999999999999999999999999999988777766654
No 113
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.03 E-value=8.5e-09 Score=87.93 Aligned_cols=126 Identities=13% Similarity=0.088 Sum_probs=109.7
Q ss_pred ChHHhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 039282 33 DPTELYDYRLHKRNDFEDSIRRV-PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINH 111 (476)
Q Consensus 33 d~eel~e~~~~a~~~~e~~l~~~-p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~ 111 (476)
+.+++..+-.+ =-.+.-+.... +...+....||......|+++.|.++|+-++..+|.+...|..++.++...|++.+
T Consensus 9 ~~~~~~~f~~~-Ggsl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~ 87 (157)
T PRK15363 9 QAHDTMRFFRR-GGSLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGE 87 (157)
T ss_pred hHHHHHHHHHc-CCcHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHH
Confidence 44444444322 22333444556 77889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 039282 112 ARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 112 A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~ 159 (476)
|...|.+|..+.|+++...+..+.++...|+.+.|+..|+.++.++..
T Consensus 88 AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 88 AIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999998843
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.02 E-value=3.4e-08 Score=90.05 Aligned_cols=171 Identities=14% Similarity=0.113 Sum_probs=153.6
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 039282 76 DRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMH 155 (476)
Q Consensus 76 ~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~ 155 (476)
..+...+-+....+|.+..+ ..+...+...|+-+.+..+...++...|.+..+...++......|++..|...|.++..
T Consensus 50 ~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~ 128 (257)
T COG5010 50 QGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR 128 (257)
T ss_pred hHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 34666777777889999999 99999999999999999999999999999999998999999999999999999999999
Q ss_pred cCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChh
Q 039282 156 WTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDE 234 (476)
Q Consensus 156 ~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~ 234 (476)
..|++ ..|...+-.+.+.|+++.|+.-|.+++++.|+++.+..+++-.+.-.|+++.|+.++.++... -+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~-~~-------- 199 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS-PA-------- 199 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC-CC--------
Confidence 99987 999999999999999999999999999999999999999999999999999999999999887 44
Q ss_pred hHHHHHHHHHHHHHHccchhHH
Q 039282 235 GAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 235 ~~~~l~~~~a~~e~~~~~~e~A 256 (476)
.+..+-...+...-.+|++..|
T Consensus 200 ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 200 ADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred CchHHHHHHHHHHhhcCChHHH
Confidence 4555666777766677777766
No 115
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=99.01 E-value=2.7e-08 Score=97.42 Aligned_cols=168 Identities=15% Similarity=0.286 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC------------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNE------------FDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN 110 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~------------~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~ 110 (476)
+....|++.++.+|.|++.|+.|+.+....-. .+...++|++||..+|.+..+|+.|.....+.-+.+
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~ 82 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSE 82 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHH
Confidence 45678999999999999999999998876422 457789999999999999999999999999989999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039282 111 HARNVWDRAVAVLPHVDQLWYKYIRMEEIA---GNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLV 187 (476)
Q Consensus 111 ~A~~~~~ral~~~p~~~~lw~~~~~~~~~~---g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l 187 (476)
.....+++++..+|++..+|..|+.+.... -.++.++.+|.++|....... ............++..
T Consensus 83 ~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~---------~~~~~~~~~~~~~e~~- 152 (321)
T PF08424_consen 83 KLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRR---------SGRMTSHPDLPELEEF- 152 (321)
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhh---------ccccccccchhhHHHH-
Confidence 999999999999999999999999997662 368899999999886433210 0000000011111111
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 039282 188 QCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKL 225 (476)
Q Consensus 188 ~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~ 225 (476)
-..++..++.|+.+.|..+.|..+++-.++.++
T Consensus 153 -----~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 153 -----MLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred -----HHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 146788889999999999999999999998743
No 116
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.01 E-value=2.1e-06 Score=88.61 Aligned_cols=230 Identities=12% Similarity=0.131 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEE 138 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~ 138 (476)
.++.+-.+.++...|++++|...++..-..-++...+.-..+.++++.|+.++|..+|...+..+|.+...+..+..+..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHh
Confidence 35556667888899999999999999988888889999999999999999999999999999999999888888887763
Q ss_pred Hh-----CCHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHhh----------------hHHHHH
Q 039282 139 IA-----GNVAAARLIFDRWMHWTPDQ-----------------QAWLSYIKFELRYE----------------QVELAR 180 (476)
Q Consensus 139 ~~-----g~~~~A~~~~eral~~~P~~-----------------~~w~~~~~~~~~~g----------------~~~~A~ 180 (476)
.. .+......+|+..-...|.. .....|+.-..+.| +..-..
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHH
Confidence 22 24667778888877776642 11233333333222 222223
Q ss_pred HHHHHHHHh---------------CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH
Q 039282 181 QVFERLVQC---------------HPNVVSSWI--KYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAF 243 (476)
Q Consensus 181 ~~~~r~l~~---------------~p~~~~~w~--~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~ 243 (476)
.++..++.. .|...-+|. -++..+...|++++|....++||+. .| +...+|..-
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-tP--------t~~ely~~K 234 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-TP--------TLVELYMTK 234 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CC--------CcHHHHHHH
Confidence 334443321 111133464 4488888999999999999999999 88 788999999
Q ss_pred HHHHHHccchhHH--HHHHH--hCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhcc
Q 039282 244 AEFEERYKESESE--ALRKE--FGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERT 308 (476)
Q Consensus 244 a~~e~~~~~~e~A--~~ek~--~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~ 308 (476)
+.++...|++..| .++.. +...+ ..|.+ ..+.+..+.|++++|.+++.......
T Consensus 235 arilKh~G~~~~Aa~~~~~Ar~LD~~D---RyiNs--------K~aKy~LRa~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 235 ARILKHAGDLKEAAEAMDEARELDLAD---RYINS--------KCAKYLLRAGRIEEAEKTASLFTRED 292 (517)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhCChhh---HHHHH--------HHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence 9999999999998 22221 11111 11111 45577789999999999998876554
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=4.4e-08 Score=100.31 Aligned_cols=198 Identities=11% Similarity=0.097 Sum_probs=150.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA 140 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~ 140 (476)
.-..++..+.+.|-+..|..+||| +..|...+.++...|+..+|..+..+-++ .|.++.+|..++.+....
T Consensus 400 ~q~~laell~slGitksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccCh
Confidence 335788899999999999999999 57899999999999999999999988888 455577777776665443
Q ss_pred CCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 141 GNVAAARLIFDRWMHWTPDQ--QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYE 218 (476)
Q Consensus 141 g~~~~A~~~~eral~~~P~~--~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e 218 (476)
.+|+++.+..... .+-..++....+.+++.++...|++.+..+|-...+|+.++....+.+++..|...|.
T Consensus 471 -------s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 471 -------SLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred -------HHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 4444444443322 2334445555567888888889999888888888889998888888888888999999
Q ss_pred HHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHH
Q 039282 219 RALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRR 298 (476)
Q Consensus 219 ~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar 298 (476)
+++.. .| +....|..++.. +++.|.-.+|+
T Consensus 544 rcvtL-~P--------d~~eaWnNls~a-----------------------------------------yi~~~~k~ra~ 573 (777)
T KOG1128|consen 544 RCVTL-EP--------DNAEAWNNLSTA-----------------------------------------YIRLKKKKRAF 573 (777)
T ss_pred HHhhc-CC--------CchhhhhhhhHH-----------------------------------------HHHHhhhHHHH
Confidence 98888 77 555566665532 22556677888
Q ss_pred HHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 299 ALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 299 ~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
..+.++++.+- |.++|.+|...-...
T Consensus 574 ~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 574 RKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred HHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 88888888775 788888888877777
No 118
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.01 E-value=2.8e-08 Score=104.52 Aligned_cols=176 Identities=13% Similarity=0.042 Sum_probs=155.5
Q ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 039282 72 QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFD 151 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~e 151 (476)
..+...|...|=+++.++|...+.|..+|.++...-+...|+..|++|..++|.+...|-..+..+....+++.|..+.-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45588999999999999999999999999999988899999999999999999999999999999999999999999977
Q ss_pred HHHhcCCCH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC
Q 039282 152 RWMHWTPDQ---QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADG 228 (476)
Q Consensus 152 ral~~~P~~---~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~ 228 (476)
++-+..|-. ..|...+-.+...++...|...|+.++...|.+...|..++..|-+.|.+..|.++|.+|... .|
T Consensus 551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-rP-- 627 (1238)
T KOG1127|consen 551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-RP-- 627 (1238)
T ss_pred HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-Cc--
Confidence 777777754 568888888899999999999999999999999999999999999999999999999999998 77
Q ss_pred CCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 229 DGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 229 ~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
...-.-..-+-.+...|+|..|
T Consensus 628 ------~s~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 628 ------LSKYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred ------HhHHHHHHHHHHHHHhhhHHHH
Confidence 2221222234456677888887
No 119
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=5e-08 Score=93.81 Aligned_cols=263 Identities=10% Similarity=0.018 Sum_probs=194.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDR--- 118 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~r--- 118 (476)
..|.+.|..++...|.+...|..-+..+...|++++|.--....+.++|.........+.+....++...|...|+.
T Consensus 66 ~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~ 145 (486)
T KOG0550|consen 66 GNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEKLKSKQA 145 (486)
T ss_pred HHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHHhhhhhh
Confidence 48999999999999999999999999999999999999999999999999887777777777666666666544431
Q ss_pred ---------HHHhCCC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHH
Q 039282 119 ---------AVAVLPH------VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQV 182 (476)
Q Consensus 119 ---------al~~~p~------~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~ 182 (476)
.-.+.|. ....-..-+.++..+|+++.|.++--+.++.++.+ ....-.+..+.-.++.+.|...
T Consensus 146 ~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~h 225 (486)
T KOG0550|consen 146 YKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINH 225 (486)
T ss_pred hHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHH
Confidence 1111121 22233334456677899999999999999999876 5555566666777889999999
Q ss_pred HHHHHHhCCCCH------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHc
Q 039282 183 FERLVQCHPNVV------------SSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERY 250 (476)
Q Consensus 183 ~~r~l~~~p~~~------------~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~ 250 (476)
|+++|.+.|++. ..|..-++-..+.|++..|-+.|..||.. .| ++......+|...+....++
T Consensus 226 f~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i-dP----~n~~~naklY~nra~v~~rL 300 (486)
T KOG0550|consen 226 FQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI-DP----SNKKTNAKLYGNRALVNIRL 300 (486)
T ss_pred HhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC-Cc----cccchhHHHHHHhHhhhccc
Confidence 999999998743 45666677778899999999999999998 77 12345677888888888888
Q ss_pred cchhHHH--HHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHH
Q 039282 251 KESESEA--LRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYA 318 (476)
Q Consensus 251 ~~~e~A~--~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a 318 (476)
|....|+ -+......+.+-..++ .-+..+..+++|+.|.+-|+++++...+..+-..+.
T Consensus 301 grl~eaisdc~~Al~iD~syikall---------~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~ 361 (486)
T KOG0550|consen 301 GRLREAISDCNEALKIDSSYIKALL---------RRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLR 361 (486)
T ss_pred CCchhhhhhhhhhhhcCHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHH
Confidence 8877761 2222333333333333 334556678999999999999998876544333333
No 120
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.98 E-value=4.3e-08 Score=96.49 Aligned_cols=143 Identities=16% Similarity=-0.004 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
+.|++.+...++..|+|+-.|...+.+++..|+..+|.+.+++++..+|....+|+.|++.+++.|++.+|..++++.+.
T Consensus 323 d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~ 402 (484)
T COG4783 323 DEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF 402 (484)
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~ 200 (476)
..|.++..|..+++.+..+|+..++... ++..+...|+++.|...+.++.+...-....|..+
T Consensus 403 ~~p~dp~~w~~LAqay~~~g~~~~a~~A----------------~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~ 465 (484)
T COG4783 403 NDPEDPNGWDLLAQAYAELGNRAEALLA----------------RAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARA 465 (484)
T ss_pred cCCCCchHHHHHHHHHHHhCchHHHHHH----------------HHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 9999999999999999999998875544 45556667788888888888887764435555554
No 121
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.92 E-value=4.3e-06 Score=80.56 Aligned_cols=277 Identities=14% Similarity=0.064 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCR-NHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~-~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
+|.+...+.-+..+...-.++.-|..--+.||+++|-..+.++-+.-++ .....+..+.+....|++..|+.-.++++.
T Consensus 102 qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~ 181 (400)
T COG3071 102 QAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLE 181 (400)
T ss_pred HHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 5555555554444555566777777777789999999999999987433 356677788888999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH---------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ---------QAWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~---------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
..|+++.+.....+++...|++.....+..+.-+..--+ .+|....+=...-+..+.-...++..-..--+
T Consensus 182 ~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~ 261 (400)
T COG3071 182 MTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRN 261 (400)
T ss_pred hCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhc
Confidence 999999999999999999999999888887765543211 22222222111112222222333333233334
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhH----H-HHHHHhCChHH
Q 039282 193 VVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESES----E-ALRKEFGDWVL 267 (476)
Q Consensus 193 ~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~----A-~~ek~~g~~~~ 267 (476)
++.+-..++.-+.+.|+.++|.++.+.+++. .- | +.+...+..+ +-++.+. + ..-+.+++.+.
T Consensus 262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~-----D----~~L~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 262 DPELVVAYAERLIRLGDHDEAQEIIEDALKR-QW-----D----PRLCRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-cc-----C----hhHHHHHhhc--CCCCchHHHHHHHHHHHhCCCChh
Confidence 6788999999999999999999999999988 43 2 2233333322 1111111 0 11122333332
Q ss_pred HHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhH
Q 039282 268 IEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSI 347 (476)
Q Consensus 268 ~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (476)
+- . .++.++.+.+.|.+|...|+.+++..|+..-|.-.+...... |+.
T Consensus 330 L~---~---------tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~--------------------g~~ 377 (400)
T COG3071 330 LL---S---------TLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQL--------------------GEP 377 (400)
T ss_pred HH---H---------HHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHc--------------------CCh
Confidence 21 1 677889999999999999999999999888888888888877 888
Q ss_pred HhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhh
Q 039282 348 RGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKT 384 (476)
Q Consensus 348 ~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~ 384 (476)
..| -.+++.++.++..
T Consensus 378 ~~A---------------------~~~r~e~L~~~~~ 393 (400)
T COG3071 378 EEA---------------------EQVRREALLLTRQ 393 (400)
T ss_pred HHH---------------------HHHHHHHHHHhcC
Confidence 899 8889998865543
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.92 E-value=1.2e-08 Score=104.38 Aligned_cols=191 Identities=16% Similarity=0.139 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|..+||+ ...|-..+.+|...|+-.+|..+..+-++ .|.++.+|..++++.....-+++|..+.+..
T Consensus 415 ksAl~I~Er--------lemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~-- 483 (777)
T KOG1128|consen 415 KSALVIFER--------LEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYI-- 483 (777)
T ss_pred HHHHHHHHh--------HHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhh--
Confidence 455666655 47888999999999999999999999888 6777888888888766555555555555433
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~ 200 (476)
+...-..++....+.++++.+...|++.++.+|.. ..|..++....+.+++..|...|.+++...|++.+.|.++
T Consensus 484 ----sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNl 559 (777)
T KOG1128|consen 484 ----SARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNL 559 (777)
T ss_pred ----hHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhh
Confidence 23333444444455678888888888888888875 7888888888888888888888888888888888888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
+..+...|+..+|...+.+|++. .- ....+|..|..+-...|+++.|
T Consensus 560 s~ayi~~~~k~ra~~~l~EAlKc-n~--------~~w~iWENymlvsvdvge~eda 606 (777)
T KOG1128|consen 560 STAYIRLKKKKRAFRKLKEALKC-NY--------QHWQIWENYMLVSVDVGEFEDA 606 (777)
T ss_pred hHHHHHHhhhHHHHHHHHHHhhc-CC--------CCCeeeechhhhhhhcccHHHH
Confidence 88888888888888888888887 32 5667888888888888888877
No 123
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.90 E-value=2.9e-08 Score=77.18 Aligned_cols=99 Identities=17% Similarity=0.186 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA 140 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~ 140 (476)
.|..+|..+...|+++.|..+|++++...|.+..+|..++.++...++++.|...|++++...|.+..+|..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 47778888888899999999999999888888888888999888889999999999999988888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 039282 141 GNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 141 g~~~~A~~~~eral~~~P~ 159 (476)
|+++.|...+.+++...|.
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888877763
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.86 E-value=7.5e-08 Score=95.77 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=90.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 039282 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG 141 (476)
Q Consensus 62 w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g 141 (476)
+..-|......|+++.|+..|++|+..+|.++.+|..++.++...|+++.|...+++++.+.|.+..+|+.++.++..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45567777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCH
Q 039282 142 NVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 142 ~~~~A~~~~eral~~~P~~ 160 (476)
+++.|+..|++++..+|++
T Consensus 85 ~~~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGD 103 (356)
T ss_pred CHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999886
No 125
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.86 E-value=3.1e-08 Score=91.99 Aligned_cols=99 Identities=15% Similarity=0.160 Sum_probs=69.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHH
Q 039282 65 YAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVA 144 (476)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~ 144 (476)
-|.-....+++..|+..|.+||.++|+|+.++..-+..+.+.|.++.|..-.+.|+.++|+..+.|..++..+..+|++.
T Consensus 87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 87 EGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 33444556677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCCHHHH
Q 039282 145 AARLIFDRWMHWTPDQQAW 163 (476)
Q Consensus 145 ~A~~~~eral~~~P~~~~w 163 (476)
.|...|.++|.++|++..|
T Consensus 167 ~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESY 185 (304)
T ss_pred HHHHHHHhhhccCCCcHHH
Confidence 7777777777777776443
No 126
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=3.7e-08 Score=91.51 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 40 YRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRA 119 (476)
Q Consensus 40 ~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ra 119 (476)
|+ .|...|.++|..+|.|...+..-|..+.+.|.++.|++-.+.||.+||.+..+|.+++..+...|++.+|...|.++
T Consensus 97 Y~-eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKa 175 (304)
T KOG0553|consen 97 YQ-EAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKA 175 (304)
T ss_pred HH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhh
Confidence 54 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcHHHHHHHHHHHHHhCCHH
Q 039282 120 VAVLPHVDQLWYKYIRMEEIAGNVA 144 (476)
Q Consensus 120 l~~~p~~~~lw~~~~~~~~~~g~~~ 144 (476)
|.+.|++...|..+...+..++...
T Consensus 176 LeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 176 LELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred hccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999988877777666655433
No 127
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.78 E-value=1.2e-07 Score=94.36 Aligned_cols=99 Identities=12% Similarity=0.072 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|.++|..+|.+..+|..+|.++...|+++.|+..+++++.++|.++.+|+.++.++...|+++.|...|++++.
T Consensus 19 ~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 19 ALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHh
Q 039282 122 VLPHVDQLWYKYIRMEEIA 140 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~ 140 (476)
+.|++..+...+..+...+
T Consensus 99 l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 99 LAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred hCCCCHHHHHHHHHHHHHH
Confidence 9999998877776665544
No 128
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.75 E-value=5.1e-08 Score=72.44 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK-FINHARNVWDRAVAVLP 124 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~-~~~~A~~~~~ral~~~p 124 (476)
+...|..+|..+...|++++|+..|++++..+|+++.+|..++.++...| ++..|...|++++++.|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46678888888888888888888888888888888888888888888887 68888888888888776
No 129
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.75 E-value=7.4e-06 Score=78.96 Aligned_cols=203 Identities=14% Similarity=0.066 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPG-DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~-~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral 120 (476)
.++-....++-+..++ .....+..++....+||++.|+.-..+++...|.++.+.....+++...|++.....++...-
T Consensus 135 ~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ 214 (400)
T COG3071 135 DRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLR 214 (400)
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3555566666665332 355677778888888999999999999999999998888888888888888766666555444
Q ss_pred HhC--------------------------------------C----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 039282 121 AVL--------------------------------------P----HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP 158 (476)
Q Consensus 121 ~~~--------------------------------------p----~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P 158 (476)
+.. | +++.+-..|+.-+..+|..+.|..+.+.+++..-
T Consensus 215 ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 215 KAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW 294 (400)
T ss_pred HccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 221 2 2467777788888888999999999998888766
Q ss_pred CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHH
Q 039282 159 DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQ 238 (476)
Q Consensus 159 ~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~ 238 (476)
++.+...+. ..+.++...-....++.+..+|+++.++..+|.++.+++.+.+|...|+.+++. -| +..
T Consensus 295 D~~L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-~~---------s~~ 362 (400)
T COG3071 295 DPRLCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-RP---------SAS 362 (400)
T ss_pred ChhHHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CC---------Chh
Confidence 655221111 235577778888899999999999999999999999999999999999999998 55 233
Q ss_pred HHHHHHHHHHHccchhHH
Q 039282 239 LFVAFAEFEERYKESESE 256 (476)
Q Consensus 239 l~~~~a~~e~~~~~~e~A 256 (476)
-+...+..+.+.|+.+.|
T Consensus 363 ~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 363 DYAELADALDQLGEPEEA 380 (400)
T ss_pred hHHHHHHHHHHcCChHHH
Confidence 466677778888888877
No 130
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.75 E-value=4.5e-07 Score=80.68 Aligned_cols=119 Identities=13% Similarity=0.087 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYK 132 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~ 132 (476)
|.....+..+|..+...|++++|...|++++...|+. ..+|..++.++...|+++.|...|.+++...|.+...+..
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 111 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN 111 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 3556678999999999999999999999999887653 4789999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Q 039282 133 YIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNV 193 (476)
Q Consensus 133 ~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~ 193 (476)
++.++...|+...+..-++.++. .+.+|..++++++...|++
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~~-------------------~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAEA-------------------LFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHHH-------------------HHHHHHHHHHHHHhhCchh
Confidence 99999998887776665555542 3677888888888888874
No 131
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.75 E-value=2.6e-07 Score=76.27 Aligned_cols=101 Identities=11% Similarity=0.053 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---DQLWYKY 133 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---~~lw~~~ 133 (476)
..++..|..+..+|++++|...|++++..+|.+ ..+++.++.++...|++..|...|++++...|++ +.+|..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 567777888888888888888888888877766 4677778888888888888888888888877764 5677888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 134 IRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 134 ~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
+.++...|+.+.|...|.+++...|++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 888888888888888888888877764
No 132
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=2.9e-07 Score=88.66 Aligned_cols=168 Identities=14% Similarity=0.093 Sum_probs=150.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV--------- 126 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~--------- 126 (476)
|.....-+.-+.++.-.|+.++|.++--+.+.+++.+......-+.++.-+.+.+.|.+-|+++|.+.|.+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 33344555566777889999999999999999999999999999999999999999999999999999975
Q ss_pred ---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 039282 127 ---DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-----QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI 198 (476)
Q Consensus 127 ---~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~ 198 (476)
-..|..-+......|++..|..+|..+|..+|++ .++...+....+.|+..+|+.....++.++|.....+.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall 325 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALL 325 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH
Confidence 3457777888888999999999999999999986 45677777888999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 199 KYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 199 ~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.-+..+...++++.|++-|+.|++.
T Consensus 326 ~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 326 RRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998
No 133
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.72 E-value=9.8e-07 Score=75.39 Aligned_cols=102 Identities=11% Similarity=0.024 Sum_probs=78.4
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039282 124 PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAK 202 (476)
Q Consensus 124 p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~ 202 (476)
+..-...+.++......|++++|..+|+-.+..+|.+ ..|..++-.+...|++.+|+..|.+++.+.|+++......+.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 3344556677777777777777777777777777765 667777777777777778888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 203 FEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 203 ~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.+...|+.+.|+..|+.+|.. +.
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~-~~ 134 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRI-CG 134 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHH-hc
Confidence 888888888888888888887 53
No 134
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6e-07 Score=84.05 Aligned_cols=112 Identities=14% Similarity=0.151 Sum_probs=57.0
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhh---hHHHHHHHHHHHHHh
Q 039282 114 NVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYE---QVELARQVFERLVQC 189 (476)
Q Consensus 114 ~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g---~~~~A~~~~~r~l~~ 189 (476)
.-++.-+..+|++.+-|..++.++...|++..|...|.+++++.|++ +++..|+..+.... ...++..+|.+++..
T Consensus 143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~ 222 (287)
T COG4235 143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL 222 (287)
T ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence 33444444444444444444444444444444444444444444443 44444444333221 234555555566666
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 190 HPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 190 ~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
+|+++.+...++.-+...|++.+|...++..++. .|
T Consensus 223 D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~-lp 258 (287)
T COG4235 223 DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-LP 258 (287)
T ss_pred CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-CC
Confidence 6655655555555566666666666666666665 55
No 135
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=6.6e-06 Score=82.05 Aligned_cols=88 Identities=11% Similarity=0.085 Sum_probs=72.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHH
Q 039282 167 IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEF 246 (476)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~ 246 (476)
++-.+..|++..|...|.++|...|+++.++.+.+..+...|.+..|..-.+.+++. .| ++...|..-+..
T Consensus 365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p--------~~~kgy~RKg~a 435 (539)
T KOG0548|consen 365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DP--------NFIKAYLRKGAA 435 (539)
T ss_pred HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-Cc--------hHHHHHHHHHHH
Confidence 455567788999999999999999999999999999999999999999999999998 77 777788888888
Q ss_pred HHHccchhHH--HHHHHhC
Q 039282 247 EERYKESESE--ALRKEFG 263 (476)
Q Consensus 247 e~~~~~~e~A--~~ek~~g 263 (476)
+....+|+.| .|++...
T Consensus 436 l~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 436 LRAMKEYDKALEAYQEALE 454 (539)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888877 4444433
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.71 E-value=1e-06 Score=91.35 Aligned_cols=144 Identities=12% Similarity=0.091 Sum_probs=114.7
Q ss_pred HHHhCCCCHHHHHHHHHHHH--hC---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHH
Q 039282 51 SIRRVPGDTAVWINYAKWEG--SQ---NEFDRARSMWELALEEDCRNHTLWCKYAEFEMIN--------KFINHARNVWD 117 (476)
Q Consensus 51 ~l~~~p~~~~~w~~~a~~~~--~~---~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~--------~~~~~A~~~~~ 117 (476)
+...-|.+..+|-.|.+... .. ++..+|+.+|++|++.+|++..+|-.++..+... .+...+.....
T Consensus 329 ~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 329 LQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred HhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 33455788888887766533 33 3478999999999999999998888766654332 23456666777
Q ss_pred HHHHh--CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Q 039282 118 RAVAV--LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 118 ral~~--~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
+++.. .|..+.++..++.+....|+++.|...|++++...|+...+..++.++...|+.++|...|++++.+.|.++
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 76664 666778888888888888999999999999999999878888889999999999999999999999999855
No 137
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.68 E-value=8.5e-08 Score=70.34 Aligned_cols=64 Identities=22% Similarity=0.277 Sum_probs=53.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 039282 64 NYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD 127 (476)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~ 127 (476)
.+|..+...|++++|+.+|++++..+|.++.+|..++.++...|+++.|+.+|++++...|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5677888888888888888888888888888888888888888888888888888888888764
No 138
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.68 E-value=4.6e-07 Score=70.20 Aligned_cols=96 Identities=14% Similarity=0.189 Sum_probs=56.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhh
Q 039282 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYE 174 (476)
Q Consensus 96 w~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g 174 (476)
|...+..+...|+++.|..++++++...|.+..+|..++.++...++++.|...|.+++...|.. ..|..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 45555555666666666666666666666655556666666655566666666666665555544 35555555555555
Q ss_pred hHHHHHHHHHHHHHhCC
Q 039282 175 QVELARQVFERLVQCHP 191 (476)
Q Consensus 175 ~~~~A~~~~~r~l~~~p 191 (476)
+++.|...+.+++..+|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 55555555555555444
No 139
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.67 E-value=1.5e-06 Score=85.25 Aligned_cols=113 Identities=16% Similarity=0.270 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHH
Q 039282 79 RSMWELALEEDCRNHTLWCKYAEFEMINKF------------INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAA 146 (476)
Q Consensus 79 ~~~~eral~~~p~~~~lw~~y~~~e~~~~~------------~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A 146 (476)
..-|++.+.-+|.++.+|+.|+.+.-..-. .+....+|++||+.+|.+..+|..|........+.+..
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 356888999999999999999998654422 45678899999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHh---hhHHHHHHHHHHHHHhCC
Q 039282 147 RLIFDRWMHWTPDQ-QAWLSYIKFELRY---EQVELARQVFERLVQCHP 191 (476)
Q Consensus 147 ~~~~eral~~~P~~-~~w~~~~~~~~~~---g~~~~A~~~~~r~l~~~p 191 (476)
...+++++..+|++ .+|..|+.+.... -.++..+.+|.+++....
T Consensus 85 ~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~ 133 (321)
T PF08424_consen 85 AKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALS 133 (321)
T ss_pred HHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 99999999999975 8999999998763 368899999999987533
No 140
>PRK11906 transcriptional regulator; Provisional
Probab=98.66 E-value=1.4e-06 Score=86.52 Aligned_cols=119 Identities=10% Similarity=0.095 Sum_probs=88.5
Q ss_pred HHHHHHHHHHH---HhCCCCHHHHHHHHHHHHh---------CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 039282 42 LHKRNDFEDSI---RRVPGDTAVWINYAKWEGS---------QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFI 109 (476)
Q Consensus 42 ~~a~~~~e~~l---~~~p~~~~~w~~~a~~~~~---------~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~ 109 (476)
.+|..+|.+++ ..+|....++..+|.++.. ..+...|+...++|++++|.|+.+...+|.+....+++
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~ 354 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA 354 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch
Confidence 46667788888 6777776666655555443 23455677778888888888887777777777777778
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 110 NHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 110 ~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
+.|...|++|+.++|+....|+.++.+....|+.+.|+..++++++.+|..
T Consensus 355 ~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 355 KVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred hhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 888888888888888888888888888777888888888888888887763
No 141
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=2.5e-05 Score=81.22 Aligned_cols=116 Identities=16% Similarity=0.267 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 039282 95 LWCKYAEFEMINKFINHARNVWDRA----------VAVLP----------HVDQLWYKYIRMEEIAGNVAAARLIFDRWM 154 (476)
Q Consensus 95 lw~~y~~~e~~~~~~~~A~~~~~ra----------l~~~p----------~~~~lw~~~~~~~~~~g~~~~A~~~~eral 154 (476)
.+++|+..+...++++.|...|+++ |...| +++.+|..++++.++.|+.+.|..+|..+-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 3556666666666666666666653 22222 235666666666666677777666666652
Q ss_pred hcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 155 HWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222 (476)
Q Consensus 155 ~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~ 222 (476)
-|.+.+++..-+|+.++|-.+-+. ..+..+-+.++..|...|++.+|...|.+|-.
T Consensus 940 -------D~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 940 -------DYFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred -------hhhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 345555555556666666655544 34567788899999999999999999988754
No 142
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.61 E-value=2.6e-06 Score=88.68 Aligned_cols=209 Identities=21% Similarity=0.331 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE-MINKFINHARNVWDRAV 120 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e-~~~~~~~~A~~~~~ral 120 (476)
.+-+..|++.+...|.-...|+.|+.++...|+..+-..+++|++.-.+.+..+|+.|+... ...+-.+.+..++-|++
T Consensus 295 ~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~ 374 (881)
T KOG0128|consen 295 AKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAV 374 (881)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhh
Confidence 45567899999999999999999999999999999999999999999999999999999864 34566677788888999
Q ss_pred HhCCCcHHHHHHHHHHHHHhCC--------H------------------------------HHHHHHHHHHH-------h
Q 039282 121 AVLPHVDQLWYKYIRMEEIAGN--------V------------------------------AAARLIFDRWM-------H 155 (476)
Q Consensus 121 ~~~p~~~~lw~~~~~~~~~~g~--------~------------------------------~~A~~~~eral-------~ 155 (476)
..+|....+|..+.....+.+. + +.-+..|.++. .
T Consensus 375 R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~ 454 (881)
T KOG0128|consen 375 RSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYG 454 (881)
T ss_pred cCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhh
Confidence 9999888888877755444321 1 11122222221 1
Q ss_pred --cCCCHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC
Q 039282 156 --WTPDQQAWLSYIKFELR-YEQVELARQVFERLVQCHPNVVS-SWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGD 231 (476)
Q Consensus 156 --~~P~~~~w~~~~~~~~~-~g~~~~A~~~~~r~l~~~p~~~~-~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~ 231 (476)
+++...+....+.++.. +++.+.+|.+....+...-.+.. .|+.++.++...|+...+|.++.+|... ..
T Consensus 455 ~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~-~~----- 528 (881)
T KOG0128|consen 455 DQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQ-VV----- 528 (881)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhc-Cc-----
Confidence 12222344445555543 46788888888887766555555 8999999999999999999999999887 54
Q ss_pred ChhhHHHHHHHHHHHHHHccchhHH
Q 039282 232 DDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 232 ~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
+.+....++..|-.++...|.++..
T Consensus 529 ~~~~~~ev~~~~~r~Ere~gtl~~~ 553 (881)
T KOG0128|consen 529 DPEDALEVLEFFRRFEREYGTLESF 553 (881)
T ss_pred CchhHHHHHHHHHHHHhccccHHHH
Confidence 3344667888888888888776654
No 143
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.61 E-value=1.5e-06 Score=71.67 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH----HHHHHH
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ----QAWLSY 166 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~----~~w~~~ 166 (476)
..++..+......|+++.|...|.+++...|.+ +..++.++.++...|+++.|...|++++...|+. .++...
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 456667777777777777777777777777654 4567777777777777777777777777776652 456666
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCH
Q 039282 167 IKFELRYEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
+.++...|+++.|...|++++..+|++.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 6677777777777777777777777654
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.60 E-value=2.7e-07 Score=68.49 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCC
Q 039282 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG-NVAAARLIFDRWMHWTP 158 (476)
Q Consensus 92 ~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g-~~~~A~~~~eral~~~P 158 (476)
++.+|..+|..+...|+++.|...|.+++..+|+++.+|+.++.++...| ++..|+..|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 57789999999999999999999999999999999999999999999998 68999999999998887
No 145
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.58 E-value=1.5e-05 Score=72.79 Aligned_cols=169 Identities=15% Similarity=0.107 Sum_probs=103.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD---QLWY 131 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~---~lw~ 131 (476)
....+...|......|++.+|+..|++.+...|.+ ..+++.++..+...|++..|...|++.+...|+++ .+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45677788888888899999999999988887775 47778888888888899999999999888888754 3444
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH-----------------
Q 039282 132 KYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVV----------------- 194 (476)
Q Consensus 132 ~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~----------------- 194 (476)
..+........-. + ......+...+|...|+..+..+|++.
T Consensus 84 ~~g~~~~~~~~~~-----~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 84 MLGLSYYKQIPGI-----L-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp HHHHHHHHHHHHH-----H------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccc-----h-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 4444432211000 0 011122233444444444444444422
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchh
Q 039282 195 SSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESE 254 (476)
Q Consensus 195 ~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e 254 (476)
.-=+..|.++.+.|.+..|..-|+.+++. .| +.......+...+......|..+
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~-yp-----~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIEN-YP-----DTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHH-ST-----TSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH-CC-----CCchHHHHHHHHHHHHHHhCChH
Confidence 22234578888888899999999998888 88 54445555555566555655544
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.58 E-value=2e-06 Score=74.22 Aligned_cols=115 Identities=12% Similarity=0.012 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCCHHH
Q 039282 72 QNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---DQLWYKYIRMEEIAGNVAA 145 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~~~~~~~g~~~~ 145 (476)
.++...+...++..+..+|.+ ...++.++......|+++.|...|+.++...|+. +.++..++.++...|+++.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 455555555555555555555 3444555555555555555555555555554432 2344455555555555555
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039282 146 ARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERL 186 (476)
Q Consensus 146 A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~ 186 (476)
|...++...........+...+.++...|++++|+..|+++
T Consensus 104 Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 55555442111111244555555555556666666555554
No 147
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.57 E-value=2.4e-07 Score=68.55 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=50.7
Q ss_pred HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 039282 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIR 135 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~ 135 (476)
+..|++++|..+|++++..+|++..+++.++.++...|+++.|+.++++++...|+++.+|..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456778888888888888888888888888888888888888888888888888877666665554
No 148
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.57 E-value=2.5e-05 Score=73.28 Aligned_cols=163 Identities=13% Similarity=-0.010 Sum_probs=129.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTL---WCKYAEFEMINKFINHARNVWDRAVAVLPHV---DQLWY 131 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~l---w~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---~~lw~ 131 (476)
+...+...|.-....|+++.|+..|+.++...|.++.+ .+.++..+.+.+++..|...|++.+...|++ +.+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 56677788888889999999999999999999988644 4778888899999999999999999999985 45566
Q ss_pred HHHHHHHHhC---------------C---HHHHHHHHHHHHhcCCCH----HH--------------HHHHHHHHHHhhh
Q 039282 132 KYIRMEEIAG---------------N---VAAARLIFDRWMHWTPDQ----QA--------------WLSYIKFELRYEQ 175 (476)
Q Consensus 132 ~~~~~~~~~g---------------~---~~~A~~~~eral~~~P~~----~~--------------w~~~~~~~~~~g~ 175 (476)
..+......+ + ...|...|++.+...|++ .+ -..-+.++.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 6665532222 2 245778999999999984 11 1234467778899
Q ss_pred HHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 176 VELARQVFERLVQCHPNV---VSSWIKYAKFEMRRGEIDRARNVYERA 220 (476)
Q Consensus 176 ~~~A~~~~~r~l~~~p~~---~~~w~~~a~~~~~~g~~~~A~~~~e~a 220 (476)
+.-|..-|+.++...|+. .++...++..+...|..+.|..+....
T Consensus 191 y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred hHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999999999999999974 577888888999999999998876543
No 149
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.56 E-value=1.8e-05 Score=72.29 Aligned_cols=157 Identities=13% Similarity=0.067 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHc---------
Q 039282 42 LHKRNDFEDSIRRVPGD---TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH---TLWCKYAEFEMIN--------- 106 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~---~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~---~lw~~y~~~e~~~--------- 106 (476)
..|...|++++...|.+ ..+++.+|..+...|++..|+..|++.+...|+++ .++...|......
T Consensus 22 ~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~ 101 (203)
T PF13525_consen 22 EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDR 101 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhccc
Confidence 58999999999998875 67899999999999999999999999999999975 3444444433222
Q ss_pred --CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHH
Q 039282 107 --KFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFE 184 (476)
Q Consensus 107 --~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~ 184 (476)
+....|...|+..+...|++.-.- .|...+..+-..- ...=...+.++.+.|.+..|..-|+
T Consensus 102 D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~~l--a~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 102 DQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRNRL--AEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp --HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHHHH--HHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHHHH--HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 113456666666666666543221 1111111000000 0112345678888999999999999
Q ss_pred HHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 039282 185 RLVQCHPNVV---SSWIKYAKFEMRRGEIDRAR 214 (476)
Q Consensus 185 r~l~~~p~~~---~~w~~~a~~~~~~g~~~~A~ 214 (476)
.++...|+.+ +++..++..+.+.|..+.+.
T Consensus 166 ~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 166 YVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999853 56777888888888877554
No 150
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.55 E-value=0.00034 Score=78.84 Aligned_cols=192 Identities=14% Similarity=0.050 Sum_probs=134.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCR-----N----HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD---- 127 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~-----~----~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~---- 127 (476)
.....+......|++++|...++++....+. . ..+....+.+....|+++.|...+++++...|...
T Consensus 411 l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 490 (903)
T PRK04841 411 LVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSR 490 (903)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHH
Confidence 3345566667789999999999988764322 1 12223345566788999999999999998655432
Q ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-------
Q 039282 128 -QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-------QAWLSYIKFELRYEQVELARQVFERLVQCHPN------- 192 (476)
Q Consensus 128 -~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~------- 192 (476)
..+..++.++...|+++.|+..+++++...... .....++..+...|+++.|...+++++.....
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 234556677788999999999999998764321 23455667778899999999999998875321
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 193 -VVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 193 -~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
...++..++..+...|+++.|...+.+++.. ..... + ......+...+.+....|+++.|
T Consensus 571 ~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~-~~~~~--~-~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 571 MHEFLLRIRAQLLWEWARLDEAEQCARKGLEV-LSNYQ--P-QQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh-hhccC--c-hHHHHHHHHHHHHHHHcCCHHHH
Confidence 1223445677788889999999999999886 43100 1 12234455567778888988887
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.54 E-value=3.1e-07 Score=71.13 Aligned_cols=81 Identities=17% Similarity=0.178 Sum_probs=55.8
Q ss_pred CCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 039282 72 QNEFDRARSMWELALEEDCR--NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLI 149 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~--~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~ 149 (476)
+|+++.|+.+|++++..+|. +...|+.++.++...|++..|..++++ ....|.+....+.++.++..+|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 56777777777777777774 355666677777777777777777777 666666666666677777777777777777
Q ss_pred HHHH
Q 039282 150 FDRW 153 (476)
Q Consensus 150 ~era 153 (476)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7654
No 152
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.54 E-value=3.1e-06 Score=74.91 Aligned_cols=99 Identities=11% Similarity=0.052 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGD--TAVWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~--~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
.++..+...++.++.+ ...|..+|..+...|+++.|...|++++.+.|.+ +.+|..++.++...|+++.|...|+
T Consensus 17 ~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~ 96 (168)
T CHL00033 17 IVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYF 96 (168)
T ss_pred cchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4455555555566655 6788999999999999999999999999887653 4589999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhC
Q 039282 118 RAVAVLPHVDQLWYKYIRMEEIAG 141 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~~~~g 141 (476)
+++...|.....|..++.++...|
T Consensus 97 ~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 97 QALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhh
Confidence 999999998888888888887544
No 153
>PRK11906 transcriptional regulator; Provisional
Probab=98.52 E-value=9.6e-06 Score=80.58 Aligned_cols=172 Identities=14% Similarity=0.156 Sum_probs=134.5
Q ss_pred HHHhCCCCH---HHH----HHHHHHHHhCC---CHHHHHHHHHHHH---HhcCCCHHHHHHHHHHHHHc---------CC
Q 039282 51 SIRRVPGDT---AVW----INYAKWEGSQN---EFDRARSMWELAL---EEDCRNHTLWCKYAEFEMIN---------KF 108 (476)
Q Consensus 51 ~l~~~p~~~---~~w----~~~a~~~~~~~---~~~~A~~~~eral---~~~p~~~~lw~~y~~~e~~~---------~~ 108 (476)
+.+.-|.+. ..| +..|......+ +.++|..+|.+|+ .++|.....+..++.+++.. ..
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~ 319 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELA 319 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 444447777 777 33344444333 4568999999999 89999988887777765543 34
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039282 109 INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLV 187 (476)
Q Consensus 109 ~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l 187 (476)
...|..+-++|+.++|.++......+......++++.|...|++++.++|+. .+|..++....-.|+.+.|+..+++++
T Consensus 320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al 399 (458)
T PRK11906 320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL 399 (458)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6789999999999999999999999999988899999999999999999997 889999999999999999999999999
Q ss_pred HhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 188 QCHPNVV--SSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 188 ~~~p~~~--~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
...|... .+...++..|..+ .++.|..+|-+-.+.
T Consensus 400 rLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 436 (458)
T PRK11906 400 QLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYKETES 436 (458)
T ss_pred ccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhhcccc
Confidence 9999742 2233334355443 567777777664443
No 154
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=0.0011 Score=67.21 Aligned_cols=105 Identities=11% Similarity=0.093 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHH
Q 039282 209 EIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIH 286 (476)
Q Consensus 209 ~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~ 286 (476)
.+..+..++..+-+. .| .....+....+++...+|+++.| .+.... ..-.+.+...+-.|.-..++.
T Consensus 356 ~~~ka~e~L~~~~~~-~p-------~~s~~v~L~~aQl~is~gn~~~A~~il~~~~---~~~~ss~~~~~~~P~~V~aiv 424 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG-HP-------EKSKVVLLLRAQLKISQGNPEVALEILSLFL---ESWKSSILEAKHLPGTVGAIV 424 (652)
T ss_pred HHhhhHHHHHHHhcc-CC-------chhHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhhhhhhhhhccChhHHHHHH
Confidence 344555555555554 44 23455667777888888888887 222111 111122222233444344554
Q ss_pred -HHHHcCCHHHHHHHHHHHHhccC--------CHHHHHHHHHHHhhc
Q 039282 287 -FEKSQGERERRRALYERLVERTK--------HLKVWISYAKFEASA 324 (476)
Q Consensus 287 -~~~~~g~~e~Ar~l~e~~l~~~~--------~~~vw~~~a~~e~~~ 324 (476)
++.+.++.+.|..++..++.... .-.+|-..+.|+...
T Consensus 425 ~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 425 ALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 45677777778888888876421 235788888999988
No 155
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=0.00043 Score=65.99 Aligned_cols=162 Identities=11% Similarity=0.157 Sum_probs=113.1
Q ss_pred ChHHhhHHH--HHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 039282 33 DPTELYDYR--LHKRNDFEDSIRRVP---GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK 107 (476)
Q Consensus 33 d~eel~e~~--~~a~~~~e~~l~~~p---~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~ 107 (476)
-+|++...+ .-|+..+|-.+..+. ++...|+.++ +...||+++|..+|+-+...+.-+..+|..++-+..-.|
T Consensus 28 ~Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C--~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 28 ELEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHC--YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLG 105 (557)
T ss_pred hHHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHH--HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHH
Confidence 355554433 367777776665443 2567887665 456799999999999999877777899999999999999
Q ss_pred CHHHHHHHHHHHHHhCC-------------CcHHHH--------------HHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 108 FINHARNVWDRAVAVLP-------------HVDQLW--------------YKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 108 ~~~~A~~~~~ral~~~p-------------~~~~lw--------------~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
.+.+|..+-.+|... | ++.+-| ..++.+....-.+.+|+.+|.|.+.-+|..
T Consensus 106 ~Y~eA~~~~~ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey 184 (557)
T KOG3785|consen 106 QYIEAKSIAEKAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY 184 (557)
T ss_pred HHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh
Confidence 999998877666431 1 111111 122333333446889999999999999987
Q ss_pred HHHHHHHHH-HHHhhhHHHHHHHHHHHHHhCCCCHHHH
Q 039282 161 QAWLSYIKF-ELRYEQVELARQVFERLVQCHPNVVSSW 197 (476)
Q Consensus 161 ~~w~~~~~~-~~~~g~~~~A~~~~~r~l~~~p~~~~~w 197 (476)
....-|..+ +.+..-++-+.+++.-++..+|+++-+.
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~ 222 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAK 222 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHH
Confidence 665555554 4566667788888888888888865443
No 156
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.50 E-value=6.9e-06 Score=70.77 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=75.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhhhHH
Q 039282 105 INKFINHARNVWDRAVAVLPHV---DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ----QAWLSYIKFELRYEQVE 177 (476)
Q Consensus 105 ~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~----~~w~~~~~~~~~~g~~~ 177 (476)
..++...+...++..+...|++ ....+.++.+....|+++.|...|+.++...|++ -++..++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 3566666666777777777765 4455566666667777777777777777766554 34566666677777777
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221 (476)
Q Consensus 178 ~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al 221 (476)
+|...++.. ...+-.+..+...|.++...|+.+.|+..|++||
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 777777552 2222335566666777777777777777777664
No 157
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.47 E-value=0.0003 Score=79.27 Aligned_cols=268 Identities=13% Similarity=0.074 Sum_probs=177.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHH
Q 039282 64 NYAKWEGSQNEFDRARSMWELALEEDCRNH-----TLWCKYAEFEMINKFINHARNVWDRAVAVLPHV------DQLWYK 132 (476)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~eral~~~p~~~-----~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~------~~lw~~ 132 (476)
..+......|+++.|...+++++...+... ..+..++......|+++.|+..+++++...... ......
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~ 536 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQ 536 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 345666779999999999999998655432 344566777888999999999999999764321 234456
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-----CHHHHH
Q 039282 133 YIRMEEIAGNVAAARLIFDRWMHWTPD---------QQAWLSYIKFELRYEQVELARQVFERLVQCHPN-----VVSSWI 198 (476)
Q Consensus 133 ~~~~~~~~g~~~~A~~~~eral~~~P~---------~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~-----~~~~w~ 198 (476)
++.++...|+++.|...+++++..... ..++...+......|+++.|...+.+++..... ....+.
T Consensus 537 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 537 QSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 677888899999999999998875221 122345566777889999999999999875331 244556
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHH--HHHHHHHHccchhHHH--HHHHhC----ChHHHHH
Q 039282 199 KYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFV--AFAEFEERYKESESEA--LRKEFG----DWVLIED 270 (476)
Q Consensus 199 ~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~--~~a~~e~~~~~~e~A~--~ek~~g----~~~~~~~ 270 (476)
.++.+....|+.+.|...+.++... .+.. .......... .-.......|+.+.|. ...... .......
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~ 692 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENL-LGNG---RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG 692 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH-Hhcc---cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence 6788889999999999999999876 4300 0000000000 0112223355555551 111110 0000000
Q ss_pred HHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-------CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhh
Q 039282 271 AIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-------HLKVWISYAKFEASALSKDGGNPDLSEADLCERK 343 (476)
Q Consensus 271 ~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-------~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~ 343 (476)
.. ..++..+...|++++|..+|++++.... ...+...++......
T Consensus 693 ~~---------~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~------------------- 744 (903)
T PRK04841 693 QW---------RNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQ------------------- 744 (903)
T ss_pred HH---------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHc-------------------
Confidence 00 0455667789999999999999987642 124556667777666
Q ss_pred HhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 344 KQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 344 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
|+.+.| +..+.+|+......
T Consensus 745 -G~~~~A---------------------~~~L~~Al~la~~~ 764 (903)
T PRK04841 745 -GRKSEA---------------------QRVLLEALKLANRT 764 (903)
T ss_pred -CCHHHH---------------------HHHHHHHHHHhCcc
Confidence 888999 99999998877554
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.46 E-value=4.9e-05 Score=71.35 Aligned_cols=160 Identities=13% Similarity=0.102 Sum_probs=122.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH----HHH
Q 039282 91 RNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL---WYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ----QAW 163 (476)
Q Consensus 91 ~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~l---w~~~~~~~~~~g~~~~A~~~~eral~~~P~~----~~w 163 (476)
.++..+..-+......|+++.|...|++++...|.++.. .+.++..+...++++.|+..|++.++..|++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 457778888888899999999999999999999987543 4778888889999999999999999999985 333
Q ss_pred HHHHHHHHHh------------------hhHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcC
Q 039282 164 LSYIKFELRY------------------EQVELARQVFERLVQCHPNVV-----------------SSWIKYAKFEMRRG 208 (476)
Q Consensus 164 ~~~~~~~~~~------------------g~~~~A~~~~~r~l~~~p~~~-----------------~~w~~~a~~~~~~g 208 (476)
...+...... ....+|...|++.+..+|++. .-=+..+.+|.+.|
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~ 189 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRG 189 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333221111 224577899999999999853 12235578888999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 209 EIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 209 ~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
.+..|..-++.+++. .| +..............+...|..+.|
T Consensus 190 ~y~AA~~r~~~v~~~-Yp-----~t~~~~eal~~l~~ay~~lg~~~~a 231 (243)
T PRK10866 190 AYVAVVNRVEQMLRD-YP-----DTQATRDALPLMENAYRQLQLNAQA 231 (243)
T ss_pred chHHHHHHHHHHHHH-CC-----CCchHHHHHHHHHHHHHHcCChHHH
Confidence 999999999999999 98 5445555666666666666766665
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.44 E-value=4e-06 Score=87.09 Aligned_cols=119 Identities=9% Similarity=0.020 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQ--------NEFDRARSMWELALEE--DCRNHTLWCKYAEFEMINKFINH 111 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~--------~~~~~A~~~~eral~~--~p~~~~lw~~y~~~e~~~~~~~~ 111 (476)
.+|+.+|+++++.+|++..+|-.++.++... .+...+....++++.+ +|.++.++..++......|+++.
T Consensus 359 ~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~ 438 (517)
T PRK10153 359 NKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDE 438 (517)
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHH
Confidence 4899999999999999998888877655432 2345777778887764 78888889999998889999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHH
Q 039282 112 ARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ 161 (476)
Q Consensus 112 A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~ 161 (476)
|...|++|+.+.|+ ...|..++.++...|+.++|...|++++.++|...
T Consensus 439 A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 439 AYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 99999999999995 78999999999999999999999999999999864
No 160
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.41 E-value=8e-06 Score=77.32 Aligned_cols=100 Identities=12% Similarity=0.059 Sum_probs=52.5
Q ss_pred HHHHHHHHHH-HhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHH
Q 039282 60 AVWINYAKWE-GSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAVLPH---VDQLWYK 132 (476)
Q Consensus 60 ~~w~~~a~~~-~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~---~~~lw~~ 132 (476)
..++..|..+ ...|++++|+..|+..+..+|++ +.+++.+|.++...|+++.|...|.+++...|. .+.+|+.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4444444443 33455555555555555555554 345555555555555555555555555555544 2444555
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 039282 133 YIRMEEIAGNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 133 ~~~~~~~~g~~~~A~~~~eral~~~P~ 159 (476)
++.++...|+.+.|+.+|++++...|+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 555555555555555555555555554
No 161
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.41 E-value=3.3e-06 Score=78.62 Aligned_cols=158 Identities=20% Similarity=0.388 Sum_probs=118.3
Q ss_pred ccccHHHH---HHHHhhccCCCCCCChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHH-----------
Q 039282 11 IRKTAEQI---LRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFD----------- 76 (476)
Q Consensus 11 ~qi~a~q~---l~~a~~~~~~~~i~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~----------- 76 (476)
+|---||- |.+-.++ .|-..+|+.... +.|..||.-|.+-.....-+++|++.+.......
T Consensus 5 iqyymEq~IpEleDl~ek----giFs~dE~~~Iv-ktRr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~ 79 (435)
T COG5191 5 IQYYMEQMIPELEDLKEK----GIFSPDELRRIV-KTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGK 79 (435)
T ss_pred HHHHHHHhchHHHHHHHc----CCCCHHHHHHHH-HHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 45555664 4555554 577888898886 8899999999887778888999999887532211
Q ss_pred -----------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH-HHhCCHH
Q 039282 77 -----------RARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME-EIAGNVA 144 (476)
Q Consensus 77 -----------~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~-~~~g~~~ 144 (476)
+..=+|.|+....|.++.+|..|+....+.|-+....++|..|++.+|.+..+|...+.++ ...+|+.
T Consensus 80 K~s~sD~sipqk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~ 159 (435)
T COG5191 80 KASFSDMSIPQKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIE 159 (435)
T ss_pred cccchhccccceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHH
Confidence 1112356666677888888888888888888888888888888888888888888766554 4567888
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHh
Q 039282 145 AARLIFDRWMHWTPDQ-QAWLSYIKFELRY 173 (476)
Q Consensus 145 ~A~~~~eral~~~P~~-~~w~~~~~~~~~~ 173 (476)
.+|.+|.++++.+|.+ .+|..|..++...
T Consensus 160 s~Ra~f~~glR~N~~~p~iw~eyfr~El~y 189 (435)
T COG5191 160 SSRAMFLKGLRMNSRSPRIWIEYFRMELMY 189 (435)
T ss_pred HHHHHHHhhhccCCCCchHHHHHHHHHHHH
Confidence 8888888888888875 7888888776543
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.40 E-value=1.4e-06 Score=63.80 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 98 KYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 98 ~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
..+..+...|+++.|+..|++++...|.+..+|+.++.++...|+++.|+..|++++...|++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 456677778888888888888888888888888888888888888888888888888777764
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.39 E-value=2.2e-06 Score=64.28 Aligned_cols=66 Identities=21% Similarity=0.188 Sum_probs=55.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 039282 66 AKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWY 131 (476)
Q Consensus 66 a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~ 131 (476)
..++..+++++.|..++++++..+|.++.+|..+|.++...|++..|...|++++...|+++..-.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 456778888888999999998888888888888888888888999999999999888887665543
No 164
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.38 E-value=9.5e-06 Score=78.12 Aligned_cols=182 Identities=13% Similarity=0.048 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 039282 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEED-C-RNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYI 134 (476)
Q Consensus 57 ~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~-p-~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~ 134 (476)
........++.++...++-+.+...++..+... + .++.+-+.-+.++...|+++.|..++.+. .+.++....+
T Consensus 64 ~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~V 138 (290)
T PF04733_consen 64 PELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAV 138 (290)
T ss_dssp CCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHH
Confidence 345666778877766566777777666655322 2 34445555556777789999999888765 4577778888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 039282 135 RMEEIAGNVAAARLIFDRWMHWTPDQ---QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEID 211 (476)
Q Consensus 135 ~~~~~~g~~~~A~~~~eral~~~P~~---~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~ 211 (476)
+++...++++.|.+.++.+-+++.+. .+..+++.+....+.+..|.-+|+.....+|.++.+....+......|+++
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~ 218 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYE 218 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHH
Confidence 99999999999999999999998886 556666777666678999999999999888888999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccc
Q 039282 212 RARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE 252 (476)
Q Consensus 212 ~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~ 252 (476)
+|..+++.++.. .| ..+..+...+.+..-.|+
T Consensus 219 eAe~~L~~al~~-~~--------~~~d~LaNliv~~~~~gk 250 (290)
T PF04733_consen 219 EAEELLEEALEK-DP--------NDPDTLANLIVCSLHLGK 250 (290)
T ss_dssp HHHHHHHHHCCC--C--------CHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHh-cc--------CCHHHHHHHHHHHHHhCC
Confidence 999999999988 77 445555555555444443
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.37 E-value=1.5e-05 Score=70.47 Aligned_cols=85 Identities=9% Similarity=-0.001 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCCHHHHHHH
Q 039282 75 FDRARSMWELALEEDCRN--HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---DQLWYKYIRMEEIAGNVAAARLI 149 (476)
Q Consensus 75 ~~~A~~~~eral~~~p~~--~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~~~~~~~g~~~~A~~~ 149 (476)
+..+...+...+..++.+ ...|+..+......|+++.|...|++++...|++ ..+|..++.++...|+++.|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 444444444444333333 3445555555555555555555555555554432 22455555555555555555555
Q ss_pred HHHHHhcCCC
Q 039282 150 FDRWMHWTPD 159 (476)
Q Consensus 150 ~eral~~~P~ 159 (476)
|++++...|.
T Consensus 95 ~~~Al~~~~~ 104 (168)
T CHL00033 95 YFQALERNPF 104 (168)
T ss_pred HHHHHHhCcC
Confidence 5555554444
No 166
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.36 E-value=4.7e-05 Score=66.14 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALE-EDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH--VDQLWYKYIR 135 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~-~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~--~~~lw~~~~~ 135 (476)
+..-++++......|+..+|+..|++++. +...++.+.+.+++.....+++..|...++...+.+|. ++.-...++.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 34556677777777777777777777774 55666777777777777777777777777777777664 5555666777
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHH----HHHHHHHHHhCCC
Q 039282 136 MEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELA----RQVFERLVQCHPN 192 (476)
Q Consensus 136 ~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A----~~~~~r~l~~~p~ 192 (476)
.+...|.+..|+..|+.++...|+...-..|+.++..+|..+++ ..+++++...+|.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H 229 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPH 229 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchh
Confidence 77777777777777777777777776667777777776654444 3444555444443
No 167
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.36 E-value=1.1e-05 Score=80.38 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=86.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHH
Q 039282 65 YAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVA 144 (476)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~ 144 (476)
+..+....+.++.|+.+|++....+|. .+..++.++...++-.+|..++.+++...|.+..++...+.++...++++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence 344444556777777777777766654 45556777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039282 145 AARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERL 186 (476)
Q Consensus 145 ~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~ 186 (476)
.|..+..+++...|+. ..|..++..+...|+++.|...+..+
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 7777777777777776 67777777777777777777666543
No 168
>PRK15331 chaperone protein SicA; Provisional
Probab=98.35 E-value=1.1e-05 Score=69.29 Aligned_cols=106 Identities=14% Similarity=0.025 Sum_probs=96.8
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 039282 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKY 133 (476)
Q Consensus 54 ~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~ 133 (476)
..+...+....+|.-...+|+++.|..+|.-..-.+|.++..|+.++.++...+++++|...|..|..+.++++...+..
T Consensus 32 is~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~a 111 (165)
T PRK15331 32 IPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFT 111 (165)
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchH
Confidence 34455677888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 134 IRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 134 ~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
+.++..+|+...|+..|+-++.. |..
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~~-~~~ 137 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNER-TED 137 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhC-cch
Confidence 99999999999999999999984 443
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=2e-06 Score=66.55 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=50.1
Q ss_pred hCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039282 140 AGNVAAARLIFDRWMHWTPD---QQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNV 216 (476)
Q Consensus 140 ~g~~~~A~~~~eral~~~P~---~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~ 216 (476)
.|+++.|+.+|++++...|. ...|..++..+.+.|++++|..++++ ....|.++.....+|..+.+.|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666666666662 24566666666666777777666666 555555556666667777777777777777
Q ss_pred HHHH
Q 039282 217 YERA 220 (476)
Q Consensus 217 ~e~a 220 (476)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6654
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.34 E-value=2.6e-05 Score=69.31 Aligned_cols=114 Identities=10% Similarity=0.058 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Q 039282 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYI 167 (476)
Q Consensus 92 ~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~ 167 (476)
....+..++..+...|+++.|...|++++...|+. ..+|..++.++...|+++.|+..|.+++...|.. ..+..++
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34455556666666666666666666666655442 2455555666666666666666666666655543 4444455
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 168 KFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 168 ~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.++...|+...+...++.++. .+.+|..++++++.. .|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~-~p 151 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRL-AP 151 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhh-Cc
Confidence 555555544444433333321 156777888888877 66
No 171
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.34 E-value=1.4e-05 Score=75.67 Aligned_cols=102 Identities=13% Similarity=0.038 Sum_probs=73.7
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH----HHHH
Q 039282 93 HTLWCKYAEFE-MINKFINHARNVWDRAVAVLPHV---DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ----QAWL 164 (476)
Q Consensus 93 ~~lw~~y~~~e-~~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~----~~w~ 164 (476)
...++..+..+ ...|+++.|...|+..+...|++ +.+++.++.++...|+++.|+..|.+++...|++ ++|.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 35566665544 55677888888888888888876 4677777777777788888888888887777763 5666
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Q 039282 165 SYIKFELRYEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 165 ~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
..+..+...|+.+.|+.+|++++..+|++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 666667677777777777777777777644
No 172
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.31 E-value=2.8e-06 Score=62.72 Aligned_cols=63 Identities=22% Similarity=0.260 Sum_probs=57.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 039282 38 YDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAE 101 (476)
Q Consensus 38 ~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~ 101 (476)
+++. .|...|++++..+|++..+++.+|.++...|++++|+.++++++..+|+++.+|..++.
T Consensus 5 ~~~~-~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 5 GDYD-EAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp THHH-HHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred cCHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3454 99999999999999999999999999999999999999999999999999888877665
No 173
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.30 E-value=4.6e-07 Score=84.18 Aligned_cols=98 Identities=19% Similarity=0.391 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE-MINKFINHARNVWDRAV 120 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e-~~~~~~~~A~~~~~ral 120 (476)
++..-+|.++....|+++..|..|+.+....|.+...-.+|..+|..+|.|+++|+..+..+ ...+++..+|++|.+++
T Consensus 90 qk~~f~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl 169 (435)
T COG5191 90 QKKIFELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGL 169 (435)
T ss_pred ceeeEeeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhh
Confidence 35566777888889999999999999999999999999999999999999999999877765 46899999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHH
Q 039282 121 AVLPHVDQLWYKYIRMEEI 139 (476)
Q Consensus 121 ~~~p~~~~lw~~~~~~~~~ 139 (476)
..+|+++.+|..|..++..
T Consensus 170 R~N~~~p~iw~eyfr~El~ 188 (435)
T COG5191 170 RMNSRSPRIWIEYFRMELM 188 (435)
T ss_pred ccCCCCchHHHHHHHHHHH
Confidence 9999999999999999765
No 174
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.3e-05 Score=76.19 Aligned_cols=129 Identities=14% Similarity=0.102 Sum_probs=95.9
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 039282 63 INYAKWEGSQNEFDRARSMWELALEEDCRN---------------HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD 127 (476)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~eral~~~p~~---------------~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~ 127 (476)
..-|..+.+.|++..|...|+||+..-... ....++++.++.+.+.+..|.....++|...|++.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 345677888899999999999988643321 35677778888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhH-HHHHHHHHHHHHhCC
Q 039282 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQV-ELARQVFERLVQCHP 191 (476)
Q Consensus 128 ~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~-~~A~~~~~r~l~~~p 191 (476)
+..+.-++.+...|+++.|+..|.++++..|++ .+-..++.+-.+..++ ++.+.+|.+++...+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888888888888888888888888888888877 4455555555444443 344677777776544
No 175
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.29 E-value=0.00039 Score=62.74 Aligned_cols=183 Identities=17% Similarity=0.182 Sum_probs=99.5
Q ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHH
Q 039282 43 HKRNDFEDSIR--RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAE-FEMINKFINHARNVWDRA 119 (476)
Q Consensus 43 ~a~~~~e~~l~--~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~-~e~~~~~~~~A~~~~~ra 119 (476)
.+...+...+. ..+.....+...+......+++..+...+..++..++.+...+..... ++...|++..|...|.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 77 EALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34444444443 445555556666666666666666666666666555554444444444 555566666666666666
Q ss_pred HHhCC---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Q 039282 120 VAVLP---HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD--QQAWLSYIKFELRYEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 120 l~~~p---~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~--~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
+...| ................++...+...+.+++...|. ...+......+...+.++.|...+..++...|...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 236 (291)
T COG0457 157 LELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNA 236 (291)
T ss_pred HhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccH
Confidence 55444 23333444444444555666666666666665555 24455555555555556666666666666655544
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 195 SSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 195 ~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
..+...+..+...|..+.+...+.+++.. .|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 267 (291)
T COG0457 237 EALYNLALLLLELGRYEEALEALEKALEL-DP 267 (291)
T ss_pred HHHhhHHHHHHHcCCHHHHHHHHHHHHHh-Cc
Confidence 44444444444445566666666666655 44
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.29 E-value=3.5e-05 Score=76.78 Aligned_cols=121 Identities=13% Similarity=0.192 Sum_probs=106.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhh
Q 039282 97 CKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQ 175 (476)
Q Consensus 97 ~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~ 175 (476)
-.+..+....+.++.|+++|++..+..|. .+..++.++...++-.+|..++.+++...|.+ .++...+.|+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 33445556678899999999999998875 45667888888889999999999999999965 888999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 176 VELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220 (476)
Q Consensus 176 ~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~a 220 (476)
++.|..+.++++...|++...|..++..|...|+++.|......+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999777643
No 177
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.29 E-value=0.001 Score=59.99 Aligned_cols=184 Identities=16% Similarity=0.134 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPG--DTAVWINYAKWEGSQNEFDRARSMWELALE--EDCRNHTLWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~--~~~~w~~~a~~~~~~~~~~~A~~~~eral~--~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
..+...+...+...+. ........+......+.+..+...+..++. ..+.....+...+......+++..+...+.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (291)
T COG0457 40 AEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLE 119 (291)
T ss_pred HHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3566777777777776 377888888899999999999999999997 788889999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHH-HHHHhCCHHHHHHHHHHHHhcCCC--H--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 118 RAVAVLPHVDQLWYKYIR-MEEIAGNVAAARLIFDRWMHWTPD--Q--QAWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~-~~~~~g~~~~A~~~~eral~~~P~--~--~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
.++...+.....+..... ++...|+++.|...|.+++...|. . .............++++.+...+.+++...|.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 199 (291)
T COG0457 120 KALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPD 199 (291)
T ss_pred HHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcc
Confidence 999988876566666666 788999999999999999987772 2 44555555567788999999999999999999
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 193 -VVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 193 -~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
....+..++..+...|+++.|...+..++.. .|
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~ 233 (291)
T COG0457 200 DDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DP 233 (291)
T ss_pred cchHHHHHhhHHHHHcccHHHHHHHHHHHHhh-Cc
Confidence 6899999999999999999999999999998 76
No 178
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.25 E-value=0.00024 Score=74.19 Aligned_cols=231 Identities=19% Similarity=0.219 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHH----------HHhcCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELA----------LEEDCR----------NHTLWCKYAEFEMINKFINHARNVWDR 118 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~era----------l~~~p~----------~~~lw~~y~~~e~~~~~~~~A~~~~~r 118 (476)
-..+..||..+...+|++.|.+.||++ |.-+|. +..+|.-++++....|..+.|..+|..
T Consensus 858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS 937 (1416)
T ss_pred hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence 357889999999999999999999975 333443 468899999999999999999999998
Q ss_pred HHHhCC---------------------CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHH
Q 039282 119 AVAVLP---------------------HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE 177 (476)
Q Consensus 119 al~~~p---------------------~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~ 177 (476)
|-.... .+--..+.++.+++..|++.+|...|.|+- ++.+-|.++..++--+
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq-------afsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ-------AFSNAIRLCKENDMKD 1010 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHhcCHHH
Confidence 854321 123456666667777777777766666652 2222222222222111
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHH------HHhh-----------cCCCCCCChhhHHHH
Q 039282 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRG-EIDRARNVYERA------LEKK-----------LADGDGDDDEGAEQL 239 (476)
Q Consensus 178 ~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g-~~~~A~~~~e~a------l~~~-----------~p~~~~~~~~~~~~l 239 (476)
+ +..-++...| .-....+.+|...| ...+|..+|.+| ++.. .. .+- +...++.+
T Consensus 1011 ~---L~nlal~s~~---~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa-~DL-d~~sDp~l 1082 (1416)
T KOG3617|consen 1011 R---LANLALMSGG---SDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA-KDL-DAGSDPKL 1082 (1416)
T ss_pred H---HHHHHhhcCc---hhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH-Hhc-CCCCCHHH
Confidence 1 1111111111 12233344444444 555555555543 1110 00 000 22356889
Q ss_pred HHHHHHHHHHccchhHH--------HHHHHhCC-----hHHHHHHH----Hhc-cCCCCch------hhHHHHHHcCCHH
Q 039282 240 FVAFAEFEERYKESESE--------ALRKEFGD-----WVLIEDAI----VGK-GKAPKDK------AYIHFEKSQGERE 295 (476)
Q Consensus 240 ~~~~a~~e~~~~~~e~A--------~~ek~~g~-----~~~~~~~i----~~~-~~~p~~~------~~~~~~~~~g~~e 295 (476)
+...++|...+.+|++| .|+.+++. .+..++.. ..+ ++.|... ..+++..++|.|.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh 1162 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYH 1162 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchH
Confidence 99999999999999998 34443331 11111111 111 1111110 6778888999998
Q ss_pred HHHHHHHHH
Q 039282 296 RRRALYERL 304 (476)
Q Consensus 296 ~Ar~l~e~~ 304 (476)
.|-+-|.++
T Consensus 1163 ~AtKKfTQA 1171 (1416)
T KOG3617|consen 1163 AATKKFTQA 1171 (1416)
T ss_pred HHHHHHhhh
Confidence 887777644
No 179
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.24 E-value=1.2e-05 Score=77.52 Aligned_cols=178 Identities=10% Similarity=0.048 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHhC-C-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRV-P-GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120 (476)
Q Consensus 43 ~a~~~~e~~l~~~-p-~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral 120 (476)
.+...++..+... + .+.-.-+.-|.++...|+++.|.+++.+. .+...-...+.+++..++++.|...++.+-
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444444332 2 23334445556666789999999888764 677888888999999999999999999998
Q ss_pred HhCCCcHH--HHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Q 039282 121 AVLPHVDQ--LWYKYIRMEEIAGNVAAARLIFDRWMHWTP-DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSW 197 (476)
Q Consensus 121 ~~~p~~~~--lw~~~~~~~~~~g~~~~A~~~~eral~~~P-~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w 197 (476)
....++.- +...++.+....+++..|..+|+......| ...+....+......|++++|..++..++..+|++++++
T Consensus 159 ~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 159 QIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 87665332 222333333333468999999999877754 447788888999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCH-HHHHHHHHHHHHhhcC
Q 039282 198 IKYAKFEMRRGEI-DRARNVYERALEKKLA 226 (476)
Q Consensus 198 ~~~a~~~~~~g~~-~~A~~~~e~al~~~~p 226 (476)
.+++.+....|+. +.+.+........ .|
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~-~p 267 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQS-NP 267 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHH-TT
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHh-CC
Confidence 9999999999988 6677777777666 66
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.24 E-value=0.00025 Score=61.70 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 039282 75 FDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV-LPHVDQLWYKYIRMEEIAGNVAAARLIFDRW 153 (476)
Q Consensus 75 ~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~-~p~~~~lw~~~~~~~~~~g~~~~A~~~~era 153 (476)
.++...-....+..-|+. .--+.++......|+..+|+..|++++.- .-+++.+...+++.....+++..|...++..
T Consensus 72 P~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 72 PERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred hhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 333333333344444543 34567888889999999999999999874 4567888999999999999999999999999
Q ss_pred HhcCCCH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 154 MHWTPDQ---QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 154 l~~~P~~---~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
++.+|.- +.-+.|+..+...|.+..|++.|+.++...|+ +..-..|+.++.++|..++++.-|....+.
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 9998863 56788999999999999999999999999999 999999999999999887766555544443
No 181
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=0.00024 Score=63.31 Aligned_cols=174 Identities=18% Similarity=0.207 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
.-||-.|.++|..+|.-++++.-+|-.+...|+++.|...|...+++||.+--....-+-...--|++.-|..-+.+--+
T Consensus 82 ~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 82 ALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 46788888999999999999999999999999999999999999999998877666666666667888889888888888
Q ss_pred hCCCcH--HHHHHHHHHHHHhCCHHHHH-HHHHHHHhcCCCHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHhCCCC----
Q 039282 122 VLPHVD--QLWYKYIRMEEIAGNVAAAR-LIFDRWMHWTPDQQAWLSYI-KFELRYEQVELARQVFERLVQCHPNV---- 193 (476)
Q Consensus 122 ~~p~~~--~lw~~~~~~~~~~g~~~~A~-~~~eral~~~P~~~~w~~~~-~~~~~~g~~~~A~~~~~r~l~~~p~~---- 193 (476)
.+|++| .+|.- +-++.-+...|+ .+.+|+...+.+ .|-.++ .++. |++ ....+++++..-..++
T Consensus 162 ~D~~DPfR~LWLY---l~E~k~dP~~A~tnL~qR~~~~d~e--~WG~~iV~~yL--gki-S~e~l~~~~~a~a~~n~~~A 233 (297)
T COG4785 162 DDPNDPFRSLWLY---LNEQKLDPKQAKTNLKQRAEKSDKE--QWGWNIVEFYL--GKI-SEETLMERLKADATDNTSLA 233 (297)
T ss_pred cCCCChHHHHHHH---HHHhhCCHHHHHHHHHHHHHhccHh--hhhHHHHHHHH--hhc-cHHHHHHHHHhhccchHHHH
Confidence 888754 34433 333444666665 455666654433 444333 2222 111 1123444444322221
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 194 ---VSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 194 ---~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.+++.-+++.+...|+.++|..+|+.++..
T Consensus 234 e~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 234 EHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 367888999999999999999999999987
No 182
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.00011 Score=68.47 Aligned_cols=174 Identities=13% Similarity=0.021 Sum_probs=141.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..+..++..-...+|.+......+|.+|....++..|..+|++.-...|.....-+-+++.+.+.+.+..|..+...+..
T Consensus 27 ~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D 106 (459)
T KOG4340|consen 27 ADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLD 106 (459)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC
Confidence 36777777888889999999999999999999999999999999999999988888899999999999999988776653
Q ss_pred hCCCcHHHHHHHHH----HHHHhCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Q 039282 122 VLPHVDQLWYKYIR----MEEIAGNVAAARLIFDRWMHWTPD---QQAWLSYIKFELRYEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 122 ~~p~~~~lw~~~~~----~~~~~g~~~~A~~~~eral~~~P~---~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
. +.+...-.+ +..+.+++..++.+.++. |+ .+.....+.+..+.|+++.|..-|..+++...-++
T Consensus 107 ~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl----p~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 107 N----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL----PSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred C----HHHHHHHHHHHHHHhcccccCcchHHHHHhc----cCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 2 444443333 345668889999888776 53 25667778888899999999999999999877667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 195 SSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 195 ~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
-+-++.+....+.|+++.|.......|+.
T Consensus 179 llAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 179 LLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 77788888888999999888766665554
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.19 E-value=3.2e-05 Score=74.51 Aligned_cols=161 Identities=13% Similarity=0.116 Sum_probs=114.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHH
Q 039282 64 NYAKWEGSQNEFDRARSMWELALEEDC--RN----HTLWCKYAEFEMINKFINHARNVWDRAVAVLPH------VDQLWY 131 (476)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~eral~~~p--~~----~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~------~~~lw~ 131 (476)
.-|..+...|++++|...|.++....- .+ ...+...+.++.+. ++..|...|++|+.+.-. ...+..
T Consensus 40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~ 118 (282)
T PF14938_consen 40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLK 118 (282)
T ss_dssp HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334555666777777777777764321 11 24445555554444 888999999999876321 356788
Q ss_pred HHHHHHHHh-CCHHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-------HHH
Q 039282 132 KYIRMEEIA-GNVAAARLIFDRWMHWTP---D----QQAWLSYIKFELRYEQVELARQVFERLVQCHPNV-------VSS 196 (476)
Q Consensus 132 ~~~~~~~~~-g~~~~A~~~~eral~~~P---~----~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~-------~~~ 196 (476)
.++.++... |+++.|+..|++++.... . .......+.++.+.|++++|..+|++.....-++ ...
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 888999888 999999999999987742 1 1567889999999999999999999998764321 245
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 197 WIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 197 w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
++..+.++...||...|+..|++.... +|
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~-~~ 227 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQ-DP 227 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTT-ST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CC
Confidence 667777888899999999999999887 65
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.16 E-value=0.0004 Score=66.92 Aligned_cols=140 Identities=14% Similarity=0.176 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHH
Q 039282 194 VSSWIKYAKFEMRR-GEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAI 272 (476)
Q Consensus 194 ~~~w~~~a~~~~~~-g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i 272 (476)
......+|.++... |+++.|...|++|++. +. .. ... .....++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~-y~-----~e-~~~----------------------------~~a~~~~ 158 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAEL-YE-----QE-GSP----------------------------HSAAECL 158 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHH-HH-----HT-T-H----------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH-----HC-CCh----------------------------hhHHHHH
Confidence 34566677888887 9999999999999998 54 11 111 0111122
Q ss_pred HhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCC-------H-HHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhH
Q 039282 273 VGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKH-------L-KVWISYAKFEASALSKDGGNPDLSEADLCERKK 344 (476)
Q Consensus 273 ~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~-------~-~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
. ..+.++.+.|++++|.++|++....... + ..++..+......
T Consensus 159 ~---------~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~-------------------- 209 (282)
T PF14938_consen 159 L---------KAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAM-------------------- 209 (282)
T ss_dssp H---------HHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHT--------------------
T ss_pred H---------HHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHc--------------------
Confidence 2 4567777899999999999999876421 1 2444444455555
Q ss_pred hhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCCh
Q 039282 345 QSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPK 422 (476)
Q Consensus 345 ~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 422 (476)
|++..| +..|++.....+.-. +..| ..++...++-. +.||.+....+.....+
T Consensus 210 ~D~v~A---------------------~~~~~~~~~~~~~F~-~s~E--~~~~~~l~~A~-~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 210 GDYVAA---------------------RKALERYCSQDPSFA-SSRE--YKFLEDLLEAY-EEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp T-HHHH---------------------HHHHHHHGTTSTTST-TSHH--HHHHHHHHHHH-HTT-CCCHHHHCHHHTT
T ss_pred CCHHHH---------------------HHHHHHHHhhCCCCC-CcHH--HHHHHHHHHHH-HhCCHHHHHHHHHHHcc
Confidence 788889 888888766544221 2223 22333333322 45777777766555443
No 185
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00091 Score=63.81 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=117.8
Q ss_pred HhCCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHH
Q 039282 70 GSQNEFDRARSMWELALEEDCR---NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAA 146 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~---~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A 146 (476)
+...|+..|+++++-.+.++-. +..+|+.+ +....|++++|.+.|.-+.....-+.++|..++-+..-+|.+.+|
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~--C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA 110 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAH--CYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEA 110 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHH--HHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHH
Confidence 4567899999999988865543 56788755 566789999999999999987666789999999999999999998
Q ss_pred HHHHHHHHhcC-------------CCH--------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 039282 147 RLIFDRWMHWT-------------PDQ--------------QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK 199 (476)
Q Consensus 147 ~~~~eral~~~-------------P~~--------------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~ 199 (476)
.++-+++-+.. .+. .--++++.+....-.+.+|+.+|.+.+.-.|+...+=..
T Consensus 111 ~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy 190 (557)
T KOG3785|consen 111 KSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVY 190 (557)
T ss_pred HHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHH
Confidence 88876652110 011 112334444444457899999999999999986666666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 200 YAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 200 ~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
++..+.+..-++-+.+++.--++. +|
T Consensus 191 ~ALCyyKlDYydvsqevl~vYL~q-~p 216 (557)
T KOG3785|consen 191 MALCYYKLDYYDVSQEVLKVYLRQ-FP 216 (557)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHh-CC
Confidence 778888888899999999999998 88
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.11 E-value=9.8e-05 Score=60.95 Aligned_cols=96 Identities=13% Similarity=-0.038 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAVLPH---VDQLWYKY 133 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~---~~~lw~~~ 133 (476)
.+++..|..+-..|+.++|+.+|++++...+.. ..+++.++..+...|++++|..+++.++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 457778888888999999999999999865444 578889999999999999999999999998888 78888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHh
Q 039282 134 IRMEEIAGNVAAARLIFDRWMH 155 (476)
Q Consensus 134 ~~~~~~~g~~~~A~~~~eral~ 155 (476)
+......|+.++|...+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8888888999998888877664
No 187
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.10 E-value=6.8e-06 Score=54.96 Aligned_cols=42 Identities=24% Similarity=0.334 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAE 101 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~ 101 (476)
..|..+|.++...|++++|+.+|+++++.+|+|+.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 578888888888888888888888888888888888888775
No 188
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=98.09 E-value=4.3e-06 Score=50.33 Aligned_cols=31 Identities=48% Similarity=0.817 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHhccCCHHHHHHHHHHHh
Q 039282 292 GERERRRALYERLVERTKHLKVWISYAKFEA 322 (476)
Q Consensus 292 g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~ 322 (476)
.++++||.+|++.+..+|+++.|+.||.||.
T Consensus 1 kE~dRAR~IyeR~v~~hp~~k~WikyAkFEe 31 (32)
T PF02184_consen 1 KEFDRARSIYERFVLVHPEVKNWIKYAKFEE 31 (32)
T ss_pred ChHHHHHHHHHHHHHhCCCchHHHHHHHhhc
Confidence 3689999999999999999999999999985
No 189
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=9.6e-05 Score=71.91 Aligned_cols=130 Identities=15% Similarity=0.164 Sum_probs=111.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHV---------------DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 96 w~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---------------~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
-..-+..+.+.|++..|...|+||+...+.. ..+...++.++..++.+..|.....++|..+|.+
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 3445667888899999999999999887642 3467788888899999999999999999999987
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhcC
Q 039282 161 -QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEI-DRARNVYERALEKKLA 226 (476)
Q Consensus 161 -~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~-~~A~~~~e~al~~~~p 226 (476)
.+...-+..+...|+++.|+..|+++++..|++-.+-..++.+-.+...+ ++.+++|.++... .+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k-~~ 357 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK-LA 357 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc
Confidence 88999999999999999999999999999999988888888887766544 4568999999887 55
No 190
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.06 E-value=0.011 Score=57.40 Aligned_cols=259 Identities=16% Similarity=0.127 Sum_probs=178.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 039282 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE-MINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG 141 (476)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e-~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g 141 (476)
+.-++.-+-.|+++.|++-|+.++. +|..-.+=+.-..++ ...|..+.|+.+-+++-..-|.-+=.|.....-....|
T Consensus 124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 124 LLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAG 202 (531)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC
Confidence 3344455567999999999999884 454322222222222 35799999999999999999987777777777777889
Q ss_pred CHHHHHHHHHHHHhc---CCCH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 039282 142 NVAAARLIFDRWMHW---TPDQ-----QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRA 213 (476)
Q Consensus 142 ~~~~A~~~~eral~~---~P~~-----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A 213 (476)
+++.|+++....... .++. .+.+.---...-..+...|+..-..++++.|+-+..-.--+..+.+.|+.-++
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhh
Confidence 999999998765432 2332 12222222333345688899999999999999888888889999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCch----hhHHHHH
Q 039282 214 RNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDK----AYIHFEK 289 (476)
Q Consensus 214 ~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~----~~~~~~~ 289 (476)
-.+++.+.+. .| .+.++..|... +.|+.-.....+ .-....+.|++. ..+.--.
T Consensus 283 ~~ilE~aWK~-eP---------HP~ia~lY~~a--r~gdta~dRlkR----------a~~L~slk~nnaes~~~va~aAl 340 (531)
T COG3898 283 SKILETAWKA-EP---------HPDIALLYVRA--RSGDTALDRLKR----------AKKLESLKPNNAESSLAVAEAAL 340 (531)
T ss_pred hhHHHHHHhc-CC---------ChHHHHHHHHh--cCCCcHHHHHHH----------HHHHHhcCccchHHHHHHHHHHH
Confidence 9999999998 76 45577666653 344322110000 000001222221 2334445
Q ss_pred HcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccC
Q 039282 290 SQGERERRRALYERLVERTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSL 369 (476)
Q Consensus 290 ~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 369 (476)
..|++..||.--+.+....|...++.-++.+|... +|+-.++
T Consensus 341 da~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAe-------------------tGDqg~v------------------- 382 (531)
T COG3898 341 DAGEFSAARAKAEAAAREAPRESAYLLLADIEEAE-------------------TGDQGKV------------------- 382 (531)
T ss_pred hccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhc-------------------cCchHHH-------------------
Confidence 78999999999999999999888999999988765 3666788
Q ss_pred chhHHHHHHHHHhhh
Q 039282 370 SSSGVFEKGINYYKT 384 (476)
Q Consensus 370 ~~r~ifera~~~~~~ 384 (476)
|...-+|++...+
T Consensus 383 --R~wlAqav~APrd 395 (531)
T COG3898 383 --RQWLAQAVKAPRD 395 (531)
T ss_pred --HHHHHHHhcCCCC
Confidence 8888888876543
No 191
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.06 E-value=0.0002 Score=59.12 Aligned_cols=96 Identities=14% Similarity=0.084 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 039282 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ----QAWLSYIKFELRYEQVELARQVFERLVQCHPN---VVSSWIKY 200 (476)
Q Consensus 128 ~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~---~~~~w~~~ 200 (476)
.+++..+.++...|+.++|+.+|++++...++. .++..++..+...|++++|..+++..+..+|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 356666777777777777777777777654432 45666777777777777777777777777776 55666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 039282 201 AKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
+..+...|+.++|...+-.++..
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 66777777777777777666554
No 192
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.02 E-value=2e-05 Score=58.91 Aligned_cols=61 Identities=21% Similarity=0.282 Sum_probs=52.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 100 AEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 100 ~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
..++...++++.|..++++++...|.++.+|..++.++...|++..|...|+++++..|++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 3567788888888889999988888888888888888888888888888888888888875
No 193
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.93 E-value=0.0034 Score=57.97 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=126.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH-HHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL-WYKY 133 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~l-w~~~ 133 (476)
.+..|..-|.-.++.|++++|.+.|+.+...+|.+ ..+.+.++....+.+++..|+...+|-+.+.|+++.+ |..|
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 46788888999999999999999999999988876 4777888888999999999999999999999987653 3333
Q ss_pred HHHHHHh-------CC---HHHHHHHHHHHHhcCCCH----HH--------------HHHHHHHHHHhhhHHHHHHHHHH
Q 039282 134 IRMEEIA-------GN---VAAARLIFDRWMHWTPDQ----QA--------------WLSYIKFELRYEQVELARQVFER 185 (476)
Q Consensus 134 ~~~~~~~-------g~---~~~A~~~~eral~~~P~~----~~--------------w~~~~~~~~~~g~~~~A~~~~~r 185 (476)
+...... .+ ...|..-|...+...|++ ++ =..-++++.+.|.+-.|..-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3333221 12 345667778889999974 11 23345788888999999999999
Q ss_pred HHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 186 LVQCHPNV---VSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 186 ~l~~~p~~---~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
+++..|+. .+.+..+...+...|-.++|...-. .|....|
T Consensus 193 v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p 235 (254)
T COG4105 193 VLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGANYP 235 (254)
T ss_pred HHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCC
Confidence 99988864 4667777888888888887765543 3444144
No 194
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.93 E-value=0.012 Score=57.22 Aligned_cols=262 Identities=18% Similarity=0.099 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 41 RLHKRNDFEDSIRRVPGDTAVWINYAKWE-GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRA 119 (476)
Q Consensus 41 ~~~a~~~~e~~l~~~p~~~~~w~~~a~~~-~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ra 119 (476)
...|++-||..+. +|..-.+=++-..++ ...|+.+.|+.+-+++-.+-|.-+-.|....+-.+..|+.+.|..+.+..
T Consensus 136 ~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 136 YEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred hHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3589999988864 454322222211122 24699999999999999999998888888888888899999999999877
Q ss_pred HHhC---CCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 039282 120 VAVL---PHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHP 191 (476)
Q Consensus 120 l~~~---p~~~----~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p 191 (476)
.... ++.. -....---+.....+...|+..-..++++.|+- ..-..-+..+.+.|+.-++-.+++.+-+..|
T Consensus 215 ~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~eP 294 (531)
T COG3898 215 RAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEP 294 (531)
T ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCC
Confidence 6532 2211 112222222333456778888888888888874 4445566777888888899999999988888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHH
Q 039282 192 NVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDA 271 (476)
Q Consensus 192 ~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~ 271 (476)
. +++|..|... +.|+....|--=-+.+...-| ++.+.....++.-..-|++..|.- ..+.+
T Consensus 295 H-P~ia~lY~~a--r~gdta~dRlkRa~~L~slk~--------nnaes~~~va~aAlda~e~~~ARa--------~Aeaa 355 (531)
T COG3898 295 H-PDIALLYVRA--RSGDTALDRLKRAKKLESLKP--------NNAESSLAVAEAALDAGEFSAARA--------KAEAA 355 (531)
T ss_pred C-hHHHHHHHHh--cCCCcHHHHHHHHHHHHhcCc--------cchHHHHHHHHHHHhccchHHHHH--------HHHHH
Confidence 8 8888776543 445443333322233343122 333333344444444555554410 00000
Q ss_pred HHhccCCCCch---hhHHHHHH-cCCHHHHHHHHHHHHhccCC----------------HHHHHHHHHHHhhcC
Q 039282 272 IVGKGKAPKDK---AYIHFEKS-QGERERRRALYERLVERTKH----------------LKVWISYAKFEASAL 325 (476)
Q Consensus 272 i~~~~~~p~~~---~~~~~~~~-~g~~e~Ar~l~e~~l~~~~~----------------~~vw~~~a~~e~~~~ 325 (476)
. .+.|... ..++++.. .|+-.++|...-+++....+ ..+|-.+..||-..+
T Consensus 356 ~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~adg~vse~wapvspvtgRLdafewkap 426 (531)
T COG3898 356 A---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTADGVVSEAWAPVSPVTGRLDAFEWKAP 426 (531)
T ss_pred h---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccccCcccccccccCCchhhhhhhhhcCc
Confidence 0 1122211 34566544 59999999999999976421 235666666666553
No 195
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.91 E-value=9.8e-05 Score=64.17 Aligned_cols=87 Identities=20% Similarity=0.148 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC----------CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQN----------EFDRARSMWELALEEDCRNHTLWCKYAEFEMINKF--- 108 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~----------~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~--- 108 (476)
..+|+.++.....||.+.+.+++.|..+.... -++.|++-|+.||.++|+...+...++..+..++.
T Consensus 8 E~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~ 87 (186)
T PF06552_consen 8 EHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTP 87 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcC
Confidence 37889999999999999999998888776542 34578888888999999998888888887765532
Q ss_pred --------HHHHHHHHHHHHHhCCCcHH
Q 039282 109 --------INHARNVWDRAVAVLPHVDQ 128 (476)
Q Consensus 109 --------~~~A~~~~~ral~~~p~~~~ 128 (476)
++.|...|++|+...|.+..
T Consensus 88 d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 88 DTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred ChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 55566666666666665433
No 196
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.87 E-value=0.06 Score=57.60 Aligned_cols=111 Identities=11% Similarity=0.024 Sum_probs=88.2
Q ss_pred CCCChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH
Q 039282 30 KSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFI 109 (476)
Q Consensus 30 ~i~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~ 109 (476)
.|.|.=+-..++ +|.+..++.+++.|+..-+-..-|....+.|..++|..+++..-...+++-....-+-.++...++.
T Consensus 15 pi~d~ld~~qfk-kal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 15 PIYDLLDSSQFK-KALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHHHHhhhHHHH-HHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 455665666676 9999999999999999888888888888999999999888876666677766666677788999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC
Q 039282 110 NHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGN 142 (476)
Q Consensus 110 ~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~ 142 (476)
++|..+|++++...|. ..+.+.+-..+.+.++
T Consensus 94 d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~ 125 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPS-EELLYHLFMAYVREKS 125 (932)
T ss_pred hHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHH
Confidence 9999999999999998 6655555444444443
No 197
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.86 E-value=0.005 Score=56.87 Aligned_cols=159 Identities=18% Similarity=0.180 Sum_probs=123.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH--HHHHHH
Q 039282 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH---VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ--QAWLSY 166 (476)
Q Consensus 92 ~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~---~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~--~~w~~~ 166 (476)
.+..|..=|..++..|+++.|...|++....+|. ..+.-...+......++++.|+..++|-+...|.+ -.+..|
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 5678888899999999999999999999999987 46778888888889999999999999999999986 446666
Q ss_pred HHHHHHh----------hhHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 167 IKFELRY----------EQVELARQVFERLVQCHPNVV-----------------SSWIKYAKFEMRRGEIDRARNVYER 219 (476)
Q Consensus 167 ~~~~~~~----------g~~~~A~~~~~r~l~~~p~~~-----------------~~w~~~a~~~~~~g~~~~A~~~~e~ 219 (476)
+..+... .-...|..-|...+...|++. ..=...+.+|.+.|.+-.|..-++.
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~ 192 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE 192 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 6655432 235667788899999999842 1123457888999999999999999
Q ss_pred HHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 220 ALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 220 al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
+++. .| +.......+..+...+...|-.+.|
T Consensus 193 v~e~-y~-----~t~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 193 VLEN-YP-----DTSAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred HHhc-cc-----cccchHHHHHHHHHHHHHhCChHHH
Confidence 9999 88 4333444455555555556655544
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.83 E-value=0.00011 Score=73.25 Aligned_cols=69 Identities=14% Similarity=-0.020 Sum_probs=64.9
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTL---WCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 54 ~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~l---w~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.+|.+...|..+|..+...|++++|+..|++||.++|++... |+..+.++..+|++++|...|++|+.+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999854 999999999999999999999999997
No 199
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.82 E-value=0.018 Score=61.42 Aligned_cols=229 Identities=11% Similarity=0.047 Sum_probs=158.6
Q ss_pred hCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 039282 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIF 150 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~ 150 (476)
..+++..|.+-..+.+...|+..-+-..-+-...+.|..+.|..+++..-...+++....-.+-.++..++..++|..+|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45789999999999999999998888888888899999999998777666666777777777788889999999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCC---------HHHHHHHHHHH
Q 039282 151 DRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR-RGE---------IDRARNVYERA 220 (476)
Q Consensus 151 eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~-~g~---------~~~A~~~~e~a 220 (476)
++++..+|+......+...+.|.+++.+-..+--+.-+..|+.+-.+.....+..+ ... ..-|...++..
T Consensus 101 e~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~ 180 (932)
T KOG2053|consen 101 ERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKL 180 (932)
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHH
Confidence 99999999987777777777777777776666666666889866554444444432 222 23455566666
Q ss_pred HHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCch----hhHHHHHHcCCH
Q 039282 221 LEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDK----AYIHFEKSQGER 294 (476)
Q Consensus 221 l~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~----~~~~~~~~~g~~ 294 (476)
++. -+ ......+ ..-|......+|.+++| .+...+++. ..+.+. .-.++...++++
T Consensus 181 l~~-~g-----k~~s~aE-~~Lyl~iL~~~~k~~eal~~l~~~la~~-----------l~~~~~~l~~~~~dllk~l~~w 242 (932)
T KOG2053|consen 181 LEK-KG-----KIESEAE-IILYLLILELQGKYQEALEFLAITLAEK-----------LTSANLYLENKKLDLLKLLNRW 242 (932)
T ss_pred hcc-CC-----ccchHHH-HHHHHHHHHhcccHHHHHHHHHHHHHHh-----------ccccchHHHHHHHHHHHHhcCh
Confidence 655 21 1222333 34455666777888877 111111100 001000 223677789999
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHH
Q 039282 295 ERRRALYERLVERTKHLKVWISYAK 319 (476)
Q Consensus 295 e~Ar~l~e~~l~~~~~~~vw~~~a~ 319 (476)
.+--++-.+++...++. |..|..
T Consensus 243 ~~l~~l~~~Ll~k~~Dd--y~~~~~ 265 (932)
T KOG2053|consen 243 QELFELSSRLLEKGNDD--YKIYTD 265 (932)
T ss_pred HHHHHHHHHHHHhCCcc--hHHHHH
Confidence 99999999999988843 444433
No 200
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.80 E-value=0.00054 Score=57.24 Aligned_cols=106 Identities=19% Similarity=0.375 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhCC---CCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHc
Q 039282 43 HKRNDFEDSIRRVP---GDTAVWINYAKWEGSQ----NEFDRARSMWELALEEDCR---------NHTLWCKYAEFEMIN 106 (476)
Q Consensus 43 ~a~~~~e~~l~~~p---~~~~~w~~~a~~~~~~----~~~~~A~~~~eral~~~p~---------~~~lw~~y~~~e~~~ 106 (476)
+.+..||..|.... +-...|.+|+.|..+. +.-..-..+++|++....+ ...+|+.|+.+..
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~-- 80 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS-- 80 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS--
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc--
Confidence 45788999988766 4578999999998863 4566778899999975433 3688999988543
Q ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 039282 107 KFINHARNVWDRAVAVL--PHVDQLWYKYIRMEEIAGNVAAARLIFDRWM 154 (476)
Q Consensus 107 ~~~~~A~~~~~ral~~~--p~~~~lw~~~~~~~~~~g~~~~A~~~~eral 154 (476)
.+..+|..+.... -....+|..++.+++..|++..|..+|.++|
T Consensus 81 ----~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 ----DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp ----HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 7888888887643 3478999999999999999999999998875
No 201
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.78 E-value=0.0086 Score=53.66 Aligned_cols=197 Identities=22% Similarity=0.173 Sum_probs=103.5
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHH
Q 039282 107 KFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFER 185 (476)
Q Consensus 107 ~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r 185 (476)
|-..-||.-|.+++.+.|..+.+++.++.++...|+++.|...|...++.+|.. -+..+.+....-.|.+.-|..-|.+
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 334456777777777777777777777777777777777777777777777764 2233333333344667777777777
Q ss_pred HHHhCCCCH--HHHHHHHHHHHHcCCHHHH-HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchh-HHHHHHH
Q 039282 186 LVQCHPNVV--SSWIKYAKFEMRRGEIDRA-RNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESE-SEALRKE 261 (476)
Q Consensus 186 ~l~~~p~~~--~~w~~~a~~~~~~g~~~~A-~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e-~A~~ek~ 261 (476)
.-+.+|++| ..|+-+. +.+. +...| ..+.+|+-.. +.+...-.... + -.|.+. ++.|+..
T Consensus 159 fYQ~D~~DPfR~LWLYl~--E~k~-dP~~A~tnL~qR~~~~--------d~e~WG~~iV~---~--yLgkiS~e~l~~~~ 222 (297)
T COG4785 159 FYQDDPNDPFRSLWLYLN--EQKL-DPKQAKTNLKQRAEKS--------DKEQWGWNIVE---F--YLGKISEETLMERL 222 (297)
T ss_pred HHhcCCCChHHHHHHHHH--HhhC-CHHHHHHHHHHHHHhc--------cHhhhhHHHHH---H--HHhhccHHHHHHHH
Confidence 777777754 2333322 2222 33333 3444555443 11111111111 1 111111 1112211
Q ss_pred hC---ChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 039282 262 FG---DWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASA 324 (476)
Q Consensus 262 ~g---~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~ 324 (476)
.. +...+...+... .-.++..+...|+.+.|..+|.-++..+-+.-|=..|+-||...
T Consensus 223 ~a~a~~n~~~Ae~LTEt-----yFYL~K~~l~~G~~~~A~~LfKLaiannVynfVE~RyA~~EL~~ 283 (297)
T COG4785 223 KADATDNTSLAEHLTET-----YFYLGKYYLSLGDLDEATALFKLAVANNVYNFVEHRYALLELSL 283 (297)
T ss_pred HhhccchHHHHHHHHHH-----HHHHHHHHhccccHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 11 011111111000 00445667789999999999998866544333455677787765
No 202
>PRK15331 chaperone protein SicA; Provisional
Probab=97.78 E-value=0.00035 Score=60.18 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039282 129 LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR 207 (476)
Q Consensus 129 lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~ 207 (476)
-.+.++.-....|++++|..+|.-....+|.+ +.|..++..+...+++++|...|..+....++++...+..+..+...
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence 34455555556666666666666666655543 55666666666666666666666666666666666677777777777
Q ss_pred CCHHHHHHHHHHHHHh
Q 039282 208 GEIDRARNVYERALEK 223 (476)
Q Consensus 208 g~~~~A~~~~e~al~~ 223 (476)
|+.+.|+..|+.++..
T Consensus 119 ~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 119 RKAAKARQCFELVNER 134 (165)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 7777777777777765
No 203
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.76 E-value=0.00039 Score=60.51 Aligned_cols=100 Identities=19% Similarity=0.161 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHH
Q 039282 75 FDRARSMWELALEEDCRNHTLWCKYAEFEMINKF----------INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVA 144 (476)
Q Consensus 75 ~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~----------~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~ 144 (476)
|+.|++.++.....+|.++..+++++..+..+.+ ++.|..-|+.||.++|+.....+.++..+..++.+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l- 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL- 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh-
Confidence 5779999999999999999999999887765532 56777788888888888777777777666554311
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Q 039282 145 AARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS 196 (476)
Q Consensus 145 ~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~ 196 (476)
.|+. ......+++|...|++++...|++...
T Consensus 86 ------------~~d~---------~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 86 ------------TPDT---------AEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp ---------------H---------HHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred ------------cCCh---------HHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 1111 011123566667777777777774433
No 204
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.74 E-value=7.3e-05 Score=49.90 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIR 135 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~ 135 (476)
+.+|..++..+...|+++.|+.+|+++++..|+++.+|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578899999999999999999999999999999999988875
No 205
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.74 E-value=3.5e-05 Score=46.44 Aligned_cols=30 Identities=53% Similarity=1.023 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039282 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEM 205 (476)
Q Consensus 175 ~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~ 205 (476)
++++|+.+|+|++..+|+ +.+|++||.|+.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHHhhc
Confidence 578999999999999998 999999999874
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.69 E-value=0.0021 Score=54.18 Aligned_cols=119 Identities=13% Similarity=-0.006 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQ---LWY 131 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~---lw~ 131 (476)
....+..-|.-.+..|++..|+..|+......|.. ..+-+.++..+.+.+++..|...+++-++++|.++. +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y 88 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY 88 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 35667777888888888888888888888877764 466677777788888888888888888888887654 333
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Q 039282 132 KYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 132 ~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
..|...... ....|...+..+ ...+....|...|++.+..+|++.
T Consensus 89 ~~gL~~~~~-----~~~~~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 89 MRGLSYYEQ-----DEGSLQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHH-----hhhHHhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 333332222 222222222111 112235678888888888888854
No 207
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.63 E-value=0.00032 Score=69.91 Aligned_cols=70 Identities=10% Similarity=0.028 Sum_probs=66.0
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 039282 88 EDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL---WYKYIRMEEIAGNVAAARLIFDRWMHWT 157 (476)
Q Consensus 88 ~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~l---w~~~~~~~~~~g~~~~A~~~~eral~~~ 157 (476)
.+|+++..|+.++..+...|+++.|...|++++.+.|++... |+..+.++..+|++++|+..|++++...
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 578899999999999999999999999999999999998854 9999999999999999999999999873
No 208
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0064 Score=56.94 Aligned_cols=176 Identities=13% Similarity=0.033 Sum_probs=136.7
Q ss_pred HHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 039282 69 EGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARL 148 (476)
Q Consensus 69 ~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~ 148 (476)
.+....++.|+.++..-.+.+|.+......++.++....++..|...|++.....|.-.+.-.-+++.....+.+..|..
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 35667889999999999999999999999999999999999999999999999999988888889999999999999999
Q ss_pred HHHHHHhcCCC--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 149 IFDRWMHWTPD--QQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 149 ~~eral~~~P~--~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
+...+... |. +....--+.+....+++..++.+.++.-. -+..+..++.+.+..+.|+++.|.+-|+.|++. .+
T Consensus 100 V~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqv-sG 175 (459)
T KOG4340|consen 100 VAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQV-SG 175 (459)
T ss_pred HHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhh-cC
Confidence 88776543 22 12222233344566788888888776321 145778899999999999999999999999997 43
Q ss_pred CCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 227 DGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 227 ~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
-.+.+-...+-...+.|++..|
T Consensus 176 --------yqpllAYniALaHy~~~qyasA 197 (459)
T KOG4340|consen 176 --------YQPLLAYNLALAHYSSRQYASA 197 (459)
T ss_pred --------CCchhHHHHHHHHHhhhhHHHH
Confidence 2233334445555567777776
No 209
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.60 E-value=0.0023 Score=53.99 Aligned_cols=103 Identities=11% Similarity=0.059 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGD---TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDR 118 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~---~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~r 118 (476)
..|++.|+.+..+.|.. ..+-+.++..+...++++.|+..++|.++++|+++.+ -|+.......++......+..
T Consensus 27 ~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v--dYa~Y~~gL~~~~~~~~~~~~ 104 (142)
T PF13512_consen 27 EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV--DYAYYMRGLSYYEQDEGSLQS 104 (142)
T ss_pred HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc--cHHHHHHHHHHHHHhhhHHhh
Confidence 48999999999998865 5678888888999999999999999999999998753 233333333333333344444
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
.+... ...+....|..-|++.+...|++
T Consensus 105 ~~~~d--------------rD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 105 FFRSD--------------RDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred hcccc--------------cCcHHHHHHHHHHHHHHHHCcCC
Confidence 43111 11224457788888888888874
No 210
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.049 Score=50.48 Aligned_cols=160 Identities=16% Similarity=0.066 Sum_probs=101.5
Q ss_pred HHHHHHHHHHhCCCHHHHH-HHHHHHHHhcCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 039282 61 VWINYAKWEGSQNEFDRAR-SMWELALEEDCRNHTLWC-KYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEE 138 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~-~~~eral~~~p~~~~lw~-~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~ 138 (476)
+...++.+...-+..+... ++++......-.+..+|. .-+.+++..++++.|.....+.. +.++...-.++..
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-----~lE~~Al~VqI~l 148 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-----NLEAAALNVQILL 148 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-----hHHHHHHHHHHHH
Confidence 4444444444433333322 334443333333333443 34446777888888887777633 2334444445555
Q ss_pred HhCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039282 139 IAGNVAAARLIFDRWMHWTPDQ---QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARN 215 (476)
Q Consensus 139 ~~g~~~~A~~~~eral~~~P~~---~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~ 215 (476)
+...++.|+..++++.+++-+. .+-.+++.+....+.+..|.-+|+.+-...|..+.+..-.+.+....|++++|..
T Consensus 149 k~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 149 KMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHH
Confidence 6667788888888888777654 3455666666666778888888888887555447788888888888888888888
Q ss_pred HHHHHHHhhcC
Q 039282 216 VYERALEKKLA 226 (476)
Q Consensus 216 ~~e~al~~~~p 226 (476)
+++.+++. .+
T Consensus 229 lL~eaL~k-d~ 238 (299)
T KOG3081|consen 229 LLEEALDK-DA 238 (299)
T ss_pred HHHHHHhc-cC
Confidence 88888887 55
No 211
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0012 Score=61.45 Aligned_cols=87 Identities=20% Similarity=0.245 Sum_probs=57.1
Q ss_pred HhCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHH
Q 039282 139 IAGNVAAARLIFDRWMHWTPDQ----QAWLSYIKFELRYEQVELARQVFERLVQCHPN---VVSSWIKYAKFEMRRGEID 211 (476)
Q Consensus 139 ~~g~~~~A~~~~eral~~~P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~---~~~~w~~~a~~~~~~g~~~ 211 (476)
..|++..|...|..-++..|+. .+..-++......|+++.|..+|.++++.+|+ .++.+++++....+.|+.+
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d 232 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTD 232 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHH
Confidence 3455666666666666666653 44445556666666666666666666665554 3567777777777777777
Q ss_pred HHHHHHHHHHHhhcC
Q 039282 212 RARNVYERALEKKLA 226 (476)
Q Consensus 212 ~A~~~~e~al~~~~p 226 (476)
.|+.+|+..++. +|
T Consensus 233 ~A~atl~qv~k~-YP 246 (262)
T COG1729 233 EACATLQQVIKR-YP 246 (262)
T ss_pred HHHHHHHHHHHH-CC
Confidence 787777777777 77
No 212
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.0021 Score=59.88 Aligned_cols=103 Identities=15% Similarity=0.085 Sum_probs=88.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH----HHHHHHHH
Q 039282 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHV---DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ----QAWLSYIK 168 (476)
Q Consensus 96 w~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~----~~w~~~~~ 168 (476)
.+.-+--+.+.|++..|...|..-+...|++ +...+.+++.....|+++.|..+|.++.+-.|++ +....++.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 4455555677888999999999999999984 5677889999999999999999999999998874 78899999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 039282 169 FELRYEQVELARQVFERLVQCHPNVVSSWI 198 (476)
Q Consensus 169 ~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~ 198 (476)
...+.|+.+.|+.+|+..++.+|+...+-.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999998655433
No 213
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.54 E-value=0.0027 Score=52.08 Aligned_cols=93 Identities=16% Similarity=0.063 Sum_probs=79.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHHHHHHHhC
Q 039282 66 AKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV----DQLWYKYIRMEEIAG 141 (476)
Q Consensus 66 a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~----~~lw~~~~~~~~~~g 141 (476)
+-.....|+.+.|.+.|.++|.+.|.++.++..-++.+.-+|+.+.|..-+++++++.... -+.+..-+.++...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3445667999999999999999999999999999999999999999999999999986442 345667778888999
Q ss_pred CHHHHHHHHHHHHhcCC
Q 039282 142 NVAAARLIFDRWMHWTP 158 (476)
Q Consensus 142 ~~~~A~~~~eral~~~P 158 (476)
+.+.||.-|+++-++..
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 99999999999876654
No 214
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.02 Score=52.98 Aligned_cols=171 Identities=11% Similarity=0.053 Sum_probs=127.3
Q ss_pred HHHHHHHHhCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 039282 46 NDFEDSIRRVPGDTAVWIN-YAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLP 124 (476)
Q Consensus 46 ~~~e~~l~~~p~~~~~w~~-~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p 124 (476)
+.+|..+...-.+...|.. -|.+++..|+++.|.....+. .+..+...-..+..+...++-|++.++++.....
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 3455555555555545554 455777889999999988873 4455555556677788889999999999998754
Q ss_pred CcHHHHHHHH----HHHHHhCCHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 039282 125 HVDQLWYKYI----RMEEIAGNVAAARLIFDRWMH-WTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK 199 (476)
Q Consensus 125 ~~~~lw~~~~----~~~~~~g~~~~A~~~~eral~-~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~ 199 (476)
+ .+...++ .+....+.+..|.-+|+..-. ..|...+....+......|++++|..+++.++...++++++..+
T Consensus 169 d--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 169 D--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred H--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 3 3333233 233333458899999999988 56667888889999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 200 YAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 200 ~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
++..-...|.-..+..-+-.-+..
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHh
Confidence 999999999876655444443333
No 215
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.41 E-value=0.00069 Score=64.34 Aligned_cols=106 Identities=14% Similarity=0.057 Sum_probs=93.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 039282 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG 141 (476)
Q Consensus 62 w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g 141 (476)
...-|.-+..+|.+++|+.+|.+++.++|.|+.+...-+..+++.+.+..|..-...|+.++......+...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45667788889999999999999999999999999999999999999999999999999988777888888888888899
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHH
Q 039282 142 NVAAARLIFDRWMHWTPDQ-QAWLSYI 167 (476)
Q Consensus 142 ~~~~A~~~~eral~~~P~~-~~w~~~~ 167 (476)
+..+|..-++++|.+.|.+ .+-..|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 9999999999999999985 3333333
No 216
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.38 E-value=0.00024 Score=44.36 Aligned_cols=32 Identities=19% Similarity=0.358 Sum_probs=21.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHH
Q 039282 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRAR 79 (476)
Q Consensus 48 ~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~ 79 (476)
|+++|+.+|+++.+|..+|.++...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666677777777777777776667666664
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.36 E-value=0.11 Score=51.16 Aligned_cols=203 Identities=11% Similarity=0.081 Sum_probs=103.3
Q ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCcHHHHHHHHHHH
Q 039282 68 WEGSQNEFDRARSMWELALEEDCRNH----TLWCKYAEFEMINKFINHARNVWDRAVAVL------PHVDQLWYKYIRME 137 (476)
Q Consensus 68 ~~~~~~~~~~A~~~~eral~~~p~~~----~lw~~y~~~e~~~~~~~~A~~~~~ral~~~------p~~~~lw~~~~~~~ 137 (476)
-++..|+....+..|+.|+.+-..+. .++..++..+...+++++|..+-.-=+.+. -.-.+..-.++...
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 34567888889999999998876664 455666666666666666665432222110 01122333445555
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--------
Q 039282 138 EIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE-------- 209 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~-------- 209 (476)
...|++++|..+..|-+.+ |+++=++.++ ..++++++..|...|+
T Consensus 106 Kv~G~fdeA~~cc~rhLd~----------------------areLgDrv~e-----~RAlYNlgnvYhakGk~~g~~~pe 158 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDF----------------------ARELGDRVLE-----SRALYNLGNVYHAKGKCTGLEAPE 158 (639)
T ss_pred hhhcccchHHHHHHHHhHH----------------------HHHHhHHHhh-----hHHHhhhhhhhhhcccccCCCChh
Confidence 5556666666655554432 1122222111 2334444444433321
Q ss_pred -----HHHHHHHHHHHHHhhcCCC---CCC--ChhhHHHHHHHHHHHHHHccchhHH--------HHHHHhCChHHHHHH
Q 039282 210 -----IDRARNVYERALEKKLADG---DGD--DDEGAEQLFVAFAEFEERYKESESE--------ALRKEFGDWVLIEDA 271 (476)
Q Consensus 210 -----~~~A~~~~e~al~~~~p~~---~~~--~~~~~~~l~~~~a~~e~~~~~~e~A--------~~ek~~g~~~~~~~~ 271 (476)
.++++..++.|++. +..+ ..+ +.-.....|-..+.-+.-.|+|+.| ..-+.||++..-..+
T Consensus 159 e~g~f~~ev~~al~~Av~f-y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA 237 (639)
T KOG1130|consen 159 EKGAFNAEVTSALENAVKF-YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRA 237 (639)
T ss_pred hcccccHHHHHHHHHHHHH-HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHh
Confidence 13444444444443 2100 000 0000011122222223334667766 234467877665555
Q ss_pred HHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhc
Q 039282 272 IVGKGKAPKDKAYIHFEKSQGERERRRALYERLVER 307 (476)
Q Consensus 272 i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~ 307 (476)
-. .++..++-.|+++.|.+.|.+.+.+
T Consensus 238 ~s---------NlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 238 HS---------NLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hc---------ccchhhhhhcccHhHHHHHHHHHHH
Confidence 44 4556666889999999999988765
No 218
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.031 Score=51.62 Aligned_cols=167 Identities=12% Similarity=0.079 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGS-QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFIN-HARNVWDRA 119 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~-~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~-~A~~~~~ra 119 (476)
.||..+-+.+|..||.++.+|.---.+... ..+..+=...+++.+.-+|.|.++|..--.+....|++. .-..+..++
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~ 139 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLM 139 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 688899999999999999999744444433 467788888999999999999999998888877788777 777888888
Q ss_pred HHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH-hh-----hHHHHHHHHHHHHHhCCC
Q 039282 120 VAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELR-YE-----QVELARQVFERLVQCHPN 192 (476)
Q Consensus 120 l~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~-~~~w~~~~~~~~~-~g-----~~~~A~~~~~r~l~~~p~ 192 (476)
+..+..+-.+|..--.+....+.++.-...-.+.|+.+-. +++|...--.... .| ..+.-.......+...|+
T Consensus 140 l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~ 219 (318)
T KOG0530|consen 140 LDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPN 219 (318)
T ss_pred HhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCC
Confidence 8888888888988888888888888888888888877654 3677653221111 12 234445677788889999
Q ss_pred CHHHHHHHHHHHHH-cC
Q 039282 193 VVSSWIKYAKFEMR-RG 208 (476)
Q Consensus 193 ~~~~w~~~a~~~~~-~g 208 (476)
+..+|.-+..++.. .|
T Consensus 220 NeSaWnYL~G~l~~d~g 236 (318)
T KOG0530|consen 220 NESAWNYLKGLLELDSG 236 (318)
T ss_pred CccHHHHHHHHHHhccC
Confidence 99999999888876 44
No 219
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.34 E-value=0.084 Score=55.29 Aligned_cols=107 Identities=14% Similarity=0.143 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHh---hcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHh
Q 039282 194 VSSWIKYAKFEMRRGEIDRARNVYERA------LEK---KLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEF 262 (476)
Q Consensus 194 ~~~w~~~a~~~~~~g~~~~A~~~~e~a------l~~---~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~ 262 (476)
.+++-+.+.++.+..++++|.+.|.++ ++. .+| .....+=..|+..++..|+++.| +|-..-
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp-------~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP-------EEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc-------HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 456677777888888888998888754 332 134 34556778889989999998888 333222
Q ss_pred CChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 039282 263 GDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASA 324 (476)
Q Consensus 263 g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~ 324 (476)
.....++.++ ...+|.+|..+.+..-........+-..+.-+.+.
T Consensus 734 ~~~kaieaai-----------------~akew~kai~ildniqdqk~~s~yy~~iadhyan~ 778 (1636)
T KOG3616|consen 734 CLIKAIEAAI-----------------GAKEWKKAISILDNIQDQKTASGYYGEIADHYANK 778 (1636)
T ss_pred hHHHHHHHHh-----------------hhhhhhhhHhHHHHhhhhccccccchHHHHHhccc
Confidence 2222333332 45667777777766544433222333334444444
No 220
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.32 E-value=0.00032 Score=43.82 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 039282 82 WELALEEDCRNHTLWCKYAEFEMINKFINHAR 113 (476)
Q Consensus 82 ~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~ 113 (476)
|++||+++|+|+.+|..++.++...|+++.|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67777777777777777777777777777765
No 221
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.31 E-value=0.0038 Score=52.15 Aligned_cols=44 Identities=20% Similarity=0.425 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 178 LARQVFERLVQCH--PNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221 (476)
Q Consensus 178 ~A~~~~~r~l~~~--p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al 221 (476)
.+..+|.-+.... -..+..|..||.++...|++.+|..||+.+|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 4555555554432 3456777777777777788888888777765
No 222
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.012 Score=52.07 Aligned_cols=99 Identities=13% Similarity=0.080 Sum_probs=65.6
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 039282 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNH-----TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRM 136 (476)
Q Consensus 62 w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~-----~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~ 136 (476)
...-+.-+..+|+++.|.+-|.+||.++|... -++..-+...++++..+.|..-..+++.+.|.........+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 34445555667777777777777777777643 3444555566666777777777777777777666666666666
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 137 EEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 137 ~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
+.....++.|..-|.+.+..+|..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcch
Confidence 666666666666666666666653
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.07 Score=48.84 Aligned_cols=96 Identities=14% Similarity=0.141 Sum_probs=52.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------hCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 039282 101 EFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEI-------AGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRY 173 (476)
Q Consensus 101 ~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~-------~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~ 173 (476)
..+...+++++|...+.+|.....++-.+| .-+..+++ ...+.++..+|+++ ..++.++
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnnrslf-hAAKayEqaamLake~~klsEvvdl~eKA-------------s~lY~E~ 104 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENNRSLF-HAAKAYEQAAMLAKELSKLSEVVDLYEKA-------------SELYVEC 104 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhcccHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-------------HHHHHHh
Confidence 345556677777777777776555433333 22222222 22333344444443 3455566
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 174 EQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 174 g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
|..+.|-..++++-+. .+.-+.+.|..+|++++.. +.
T Consensus 105 GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralav-ve 141 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAV-VE 141 (308)
T ss_pred CCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHH-Hh
Confidence 6666555555554332 2335678888888888887 54
No 224
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0025 Score=57.79 Aligned_cols=100 Identities=11% Similarity=-0.013 Sum_probs=79.5
Q ss_pred HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 039282 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLI 149 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~ 149 (476)
.....+..|+..|.||+.++|..+..|.+-+.++++.++++.+..-..+|+++.|+.....+.++.......+++.|+.+
T Consensus 21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 33456778888899999999988888888888888888888888888899999898888888888888888888888888
Q ss_pred HHHHHhcC------CCHHHHHHHHHH
Q 039282 150 FDRWMHWT------PDQQAWLSYIKF 169 (476)
Q Consensus 150 ~eral~~~------P~~~~w~~~~~~ 169 (476)
+.++.... |..++|..+...
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 88885432 223566655443
No 225
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.25 E-value=0.00052 Score=51.97 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---cC-C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEE---DC-R---NHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~---~p-~---~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
..++..+|.++..+|++++|+..|++++.+ .+ . -...+..++.++...|+++.|...|++++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456677777777777777777777777754 11 1 2355666777777777777777777777654
No 226
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.23 E-value=0.00058 Score=41.86 Aligned_cols=31 Identities=42% Similarity=0.920 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHHhccC-CHHHHHHHHHHHh
Q 039282 292 GERERRRALYERLVERTK-HLKVWISYAKFEA 322 (476)
Q Consensus 292 g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~ 322 (476)
|+++.|+.+|++++...| ++.+|+.|+.|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 578899999999999999 8999999999986
No 227
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=97.21 E-value=0.00067 Score=41.56 Aligned_cols=31 Identities=48% Similarity=0.818 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 039282 73 NEFDRARSMWELALEEDCRNHTLWCKYAEFE 103 (476)
Q Consensus 73 ~~~~~A~~~~eral~~~p~~~~lw~~y~~~e 103 (476)
|+++.|+.+|++++...|.++.+|..|+.++
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 4566677777777777777777777776665
No 228
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.18 E-value=0.027 Score=56.62 Aligned_cols=152 Identities=15% Similarity=0.054 Sum_probs=100.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------------c--
Q 039282 72 QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH-----------------------V-- 126 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~-----------------------~-- 126 (476)
..+....++.-.+||+++|+++++|+.+++ .....+.+|..+|++|++.... +
T Consensus 181 ERnp~aRIkaA~eALei~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 181 ERNPQARIKAAKEALEINPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred cCCHHHHHHHHHHHHHhhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 455666666666777777777776665554 2334456666666666643211 0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 039282 127 DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ---QAWLSYIKFELRYEQVELARQVFERLVQC-HPNVVSSWIKYAK 202 (476)
Q Consensus 127 ~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~---~~w~~~~~~~~~~g~~~~A~~~~~r~l~~-~p~~~~~w~~~a~ 202 (476)
.-+-..++.+...+|...+|++.|...++..|.. .+...++..+...+.+.++..++.++-+. -|++..+.+.-+-
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 1223456667788899999999999999888763 57788889999999999999999998543 3554444333333
Q ss_pred HHHH-cCC---------------HHHHHHHHHHHHHhhcC
Q 039282 203 FEMR-RGE---------------IDRARNVYERALEKKLA 226 (476)
Q Consensus 203 ~~~~-~g~---------------~~~A~~~~e~al~~~~p 226 (476)
+-.+ .|+ ...|.+...||++. +|
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvef-NP 377 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEF-NP 377 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHh-CC
Confidence 3221 122 23467889999998 76
No 229
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.54 Score=51.38 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 039282 73 NEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDR 152 (476)
Q Consensus 73 ~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~er 152 (476)
+..++|.+.-+|+ +.+.+|..++...+..|.+..|...|-+| +++..+...+....+.|++++-...+.-
T Consensus 1089 ~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred hhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 4445554444443 33445555555555555555555555444 2333344444444444444444433332
Q ss_pred HHhc----------------------------CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039282 153 WMHW----------------------------TPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFE 204 (476)
Q Consensus 153 al~~----------------------------~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~ 204 (476)
+-+. .|+..-...-++-+...|.++.|+-+|.. +..|..++.-+
T Consensus 1159 aRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1159 ARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTL 1230 (1666)
T ss_pred HHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHH
Confidence 2221 23333334444444555555555555543 56777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCC-----hHHHHHHHHhccCCC
Q 039282 205 MRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGD-----WVLIEDAIVGKGKAP 279 (476)
Q Consensus 205 ~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~-----~~~~~~~i~~~~~~p 279 (476)
...|+++.|...-.+|-+. ..|..-.-.+...+++--| ...|- .+..+
T Consensus 1231 V~LgeyQ~AVD~aRKAns~--------------ktWK~VcfaCvd~~EFrlA---QiCGL~iivhadeLe---------- 1283 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKANST--------------KTWKEVCFACVDKEEFRLA---QICGLNIIVHADELE---------- 1283 (1666)
T ss_pred HHHHHHHHHHHHhhhccch--------------hHHHHHHHHHhchhhhhHH---HhcCceEEEehHhHH----------
Confidence 7777777776666655332 2232222222222222211 11111 11122
Q ss_pred CchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 280 KDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 280 ~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
.++.+|...|-+++-+.++|.+|.+.. |..++..++-+++..
T Consensus 1284 ---eli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1284 ---ELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY 1326 (1666)
T ss_pred ---HHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc
Confidence 567888899999999999999998886 888888888888765
No 230
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.17 E-value=0.0084 Score=53.02 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=75.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 039282 98 KYAEFEMINKFINHARNVWDRAVAVLPHVD-----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFEL 171 (476)
Q Consensus 98 ~y~~~e~~~~~~~~A~~~~~ral~~~p~~~-----~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~ 171 (476)
.=+.-+..+|.+..|..-|..||..+|... -++..-+.....++..+.|+.-..++|++.|.. .+....+..+.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 345556788999999999999999998743 345556666677788888888888888888875 66667777788
Q ss_pred HhhhHHHHHHHHHHHHHhCCCC
Q 039282 172 RYEQVELARQVFERLVQCHPNV 193 (476)
Q Consensus 172 ~~g~~~~A~~~~~r~l~~~p~~ 193 (476)
....++.|..-|.+.+..+|..
T Consensus 180 k~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcch
Confidence 8888888888888888888873
No 231
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.16 E-value=0.016 Score=49.63 Aligned_cols=88 Identities=19% Similarity=0.168 Sum_probs=50.0
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 039282 66 AKWEGSQNEFDRARSMWELALEEDCRN----------------------HTLWCKYAEFEMINKFINHARNVWDRAVAVL 123 (476)
Q Consensus 66 a~~~~~~~~~~~A~~~~eral~~~p~~----------------------~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~ 123 (476)
+......++.+.+...+++++.+.... ..+...++..+...|+++.|..++++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 333445667777777777777654322 2344444555555666666666666666666
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 039282 124 PHVDQLWYKYIRMEEIAGNVAAARLIFDRW 153 (476)
Q Consensus 124 p~~~~lw~~~~~~~~~~g~~~~A~~~~era 153 (476)
|.+..+|..++.++...|+...|..+|++.
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 666666666666666666666666666554
No 232
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.08 E-value=0.011 Score=48.61 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=53.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhhhHH
Q 039282 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-----QAWLSYIKFELRYEQVE 177 (476)
Q Consensus 103 e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-----~~w~~~~~~~~~~g~~~ 177 (476)
....|+.+.|...|.+++.+.|..+..++.-++.+...|+.++|..-+.+++++..+. ..+...+.++...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 3455677777777777777777777777777777777777777777777776665432 23333334444445555
Q ss_pred HHHHHHHHHHHh
Q 039282 178 LARQVFERLVQC 189 (476)
Q Consensus 178 ~A~~~~~r~l~~ 189 (476)
.||.-|+++-++
T Consensus 133 ~AR~DFe~AA~L 144 (175)
T KOG4555|consen 133 AARADFEAAAQL 144 (175)
T ss_pred HHHHhHHHHHHh
Confidence 555555554443
No 233
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=0.028 Score=51.89 Aligned_cols=114 Identities=7% Similarity=0.035 Sum_probs=49.5
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 46 NDFEDSIRRV-PGDTAVWINYAKWEGSQNEFDRARSMWELALEED------CRNHTLWCKYAEFEMINKFINHARNVWDR 118 (476)
Q Consensus 46 ~~~e~~l~~~-p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~------p~~~~lw~~y~~~e~~~~~~~~A~~~~~r 118 (476)
..+.+.++.+ |..+..-..++.+.++.||.+.|...|++.-+.. ..+..+....+.++...+++..|-..|++
T Consensus 198 d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~ 277 (366)
T KOG2796|consen 198 DAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTE 277 (366)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhh
Confidence 3344444444 3344444445555555555555544444322111 01122222333333344444444444444
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~ 159 (476)
++..+|.++..-+.-+.+....|+...|.+..+.++...|.
T Consensus 278 i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 278 ILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred ccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 54444444444444444444444444445555444444444
No 234
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=97.05 E-value=0.01 Score=49.18 Aligned_cols=103 Identities=18% Similarity=0.372 Sum_probs=71.4
Q ss_pred HHHHHHHHH-HhC--CCCHHHHHHHHHHHHhC---C-CHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHcC
Q 039282 44 KRNDFEDSI-RRV--PGDTAVWINYAKWEGSQ---N-EFDRARSMWELALEE---------DCRNHTLWCKYAEFEMINK 107 (476)
Q Consensus 44 a~~~~e~~l-~~~--p~~~~~w~~~a~~~~~~---~-~~~~A~~~~eral~~---------~p~~~~lw~~y~~~e~~~~ 107 (476)
.+..||..| ... .+-...|.+|+.|.... | .-..-..+++|++.. ||+...+|+.|+++.
T Consensus 4 ~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~---- 79 (125)
T smart00777 4 QRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC---- 79 (125)
T ss_pred HHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc----
Confidence 467788777 322 22368999999998752 2 344567777887754 455678899888763
Q ss_pred CHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 039282 108 FINHARNVWDRAVAVLP--HVDQLWYKYIRMEEIAGNVAAARLIFDR 152 (476)
Q Consensus 108 ~~~~A~~~~~ral~~~p--~~~~lw~~~~~~~~~~g~~~~A~~~~er 152 (476)
+.++.+|.-+....- ....+|..++.+++..|++..|..+|..
T Consensus 80 --~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 --DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred --CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 335667776665432 3567788888888888888888888864
No 235
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.24 Score=45.19 Aligned_cols=122 Identities=11% Similarity=0.157 Sum_probs=87.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHH------HHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCH-------HHHHHHHHH
Q 039282 104 MINKFINHARNVWDRAVAVLPHVDQL------WYKYIRMEEIA-GNVAAARLIFDRWMHWTPDQ-------QAWLSYIKF 169 (476)
Q Consensus 104 ~~~~~~~~A~~~~~ral~~~p~~~~l------w~~~~~~~~~~-g~~~~A~~~~eral~~~P~~-------~~w~~~~~~ 169 (476)
.+..++++|.+.+++++.+.-+-..+ ...++.+++.- .+++.|+..|+.+-.+.... .....-+.+
T Consensus 84 ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 84 YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQY 163 (288)
T ss_pred hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHH
Confidence 34557888888888888776554333 44777777654 88999999999998887653 345566667
Q ss_pred HHHhhhHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 170 ELRYEQVELARQVFERLVQCHPNVV-------SSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 170 ~~~~g~~~~A~~~~~r~l~~~p~~~-------~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
....+++.+|+.+|++.....-++. ..++.-+..+.-.++.-.+...+++..+. .|
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~-dP 226 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL-DP 226 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc-CC
Confidence 7788999999999999887554432 23444455555557777788888888777 77
No 236
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.01 E-value=0.038 Score=55.64 Aligned_cols=154 Identities=13% Similarity=0.098 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC-------------------------HHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN-------------------------HTLW 96 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~-------------------------~~lw 96 (476)
++..+.-.++|..+|++..+|+.+|.-. ...+.+|..+|++|++....+ +-+-
T Consensus 185 ~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~K 262 (539)
T PF04184_consen 185 QARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAK 262 (539)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhH
Confidence 4666788899999999999999888643 345778888888888642110 1223
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHH-
Q 039282 97 CKYAEFEMINKFINHARNVWDRAVAVLPH--VDQLWYKYIRMEEIAGNVAAARLIFDRWMHW-TPDQQAWLSYIKFELR- 172 (476)
Q Consensus 97 ~~y~~~e~~~~~~~~A~~~~~ral~~~p~--~~~lw~~~~~~~~~~g~~~~A~~~~eral~~-~P~~~~w~~~~~~~~~- 172 (476)
..++.+..+.|...+|...|...++..|. +-.+...++..+...+.+.++..++.+--.. .|.+ +...|...+.+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkS-Ati~YTaALLka 341 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKS-ATICYTAALLKA 341 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCch-HHHHHHHHHHHH
Confidence 45677778899999999999999998886 4457888889999999999999999986433 2343 33333333321
Q ss_pred --hhh---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 039282 173 --YEQ---------------VELARQVFERLVQCHPNVVSSWI 198 (476)
Q Consensus 173 --~g~---------------~~~A~~~~~r~l~~~p~~~~~w~ 198 (476)
.++ -..|.+.+.|+++.+|..++..+
T Consensus 342 Rav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL 384 (539)
T PF04184_consen 342 RAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL 384 (539)
T ss_pred HhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence 111 23467889999999999665544
No 237
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.99 E-value=0.0021 Score=39.82 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRN 92 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~ 92 (476)
..|..+|.++...|++++|+..|++++.++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456667777777777777777777777776654
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.97 E-value=0.4 Score=46.50 Aligned_cols=128 Identities=11% Similarity=-0.027 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-------HHH
Q 039282 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHV-----DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-------QAW 163 (476)
Q Consensus 96 w~~y~~~e~~~~~~~~A~~~~~ral~~~p~~-----~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-------~~w 163 (476)
+.+++....+.-++.++..+-.-.+.+.... ......++.....++.++.+.+.|+.++...... .+.
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc 165 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence 3333333344445555555555555432221 1333445555555666666666666666553221 455
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 164 LSYIKFELRYEQVELARQVFERLVQCHPN----------VVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 164 ~~~~~~~~~~g~~~~A~~~~~r~l~~~p~----------~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
..++.++.+..++++|.....++..+..+ ..-+.+.++..+...|.+-.|.+..+++.+.
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 66666666666666666666665554322 1123344444455556655555555555443
No 239
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.97 E-value=0.0013 Score=49.67 Aligned_cols=63 Identities=10% Similarity=0.050 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVAV---LPH----VDQLWYKYIRMEEIAGNVAAARLIFDRWMH 155 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~~---~p~----~~~lw~~~~~~~~~~g~~~~A~~~~eral~ 155 (476)
..++..++.++...|+++.|...|++++.. .++ ...++..++.++...|+++.|...|+++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345566666666666666666666666644 111 133455555555555666666666655554
No 240
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.83 E-value=0.0025 Score=39.57 Aligned_cols=32 Identities=19% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCR 91 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~ 91 (476)
.+|..+|.++...|+++.|...|+++|+++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777777777777777777777777777775
No 241
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.044 Score=52.37 Aligned_cols=152 Identities=12% Similarity=0.060 Sum_probs=77.6
Q ss_pred HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc---HHHHHHHHHHHHHhCCHHH
Q 039282 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV-LPHV---DQLWYKYIRMEEIAGNVAA 145 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~-~p~~---~~lw~~~~~~~~~~g~~~~ 145 (476)
...|...+|...+++.|+-.|++.-.|..--..+.-+|+-..-++.+++.+-. +|+. .-+.-.|+--....|-++.
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34556666666666666666666666655555556666665556666655543 3322 3333344444555566666
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 146 ARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPN----VVSSWIKYAKFEMRRGEIDRARNVYERA 220 (476)
Q Consensus 146 A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~----~~~~w~~~a~~~~~~g~~~~A~~~~e~a 220 (476)
|.+.-.++++++|.+ -+-...+..+...|++.++.+...+.-..-.. -...|--.+.++...+.++.|..+|.+-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 666666666666543 11222333444445555555444332111000 0123444455555556666666666654
Q ss_pred H
Q 039282 221 L 221 (476)
Q Consensus 221 l 221 (476)
+
T Consensus 274 i 274 (491)
T KOG2610|consen 274 I 274 (491)
T ss_pred H
Confidence 4
No 242
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.14 Score=47.55 Aligned_cols=187 Identities=14% Similarity=0.082 Sum_probs=116.8
Q ss_pred CCCCCcccccHHHHHHHHhhc--cCCCCCCChHHhhHHHHHHHHHHHHHHHhCCCCHHHHH--------HHHHHHHhCCC
Q 039282 5 NPRGAPIRKTAEQILRESQEH--FGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWI--------NYAKWEGSQNE 74 (476)
Q Consensus 5 ~~~~~~~qi~a~q~l~~a~~~--~~~~~i~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~--------~~a~~~~~~~~ 74 (476)
|++..=+-++-.-|-.++... +|.-..-.++.|++...+....+|....- -.++..|. .|+.+....|.
T Consensus 114 ~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~-ESsv~lW~KRl~~Vmy~~~~~llG~kE 192 (366)
T KOG2796|consen 114 GRRGSMVPFSMRILHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAE-ESSIRLWRKRLGRVMYSMANCLLGMKE 192 (366)
T ss_pred CCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 334444444444455555543 44444455566666665666666654331 13455664 35556666777
Q ss_pred HHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHhCCHHHHH
Q 039282 75 FDRARSMWELALEED-CRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLP------HVDQLWYKYIRMEEIAGNVAAAR 147 (476)
Q Consensus 75 ~~~A~~~~eral~~~-p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p------~~~~lw~~~~~~~~~~g~~~~A~ 147 (476)
+.-....+...++.+ |..+.+-..++.+.+.-|+++.|...|++.-+..- ....+....+.++.-.+|+..|-
T Consensus 193 y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~ 272 (366)
T KOG2796|consen 193 YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAH 272 (366)
T ss_pred hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHH
Confidence 777778888888776 66778888888888888888888888885543211 12334445555556667777888
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 148 LIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 148 ~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
..|.+++..+|.+ .+-..-+-+..-.|+...|.+..+.++...|.
T Consensus 273 r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 273 RFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 8888888777765 22333344444557777788888888887776
No 243
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.019 Score=52.20 Aligned_cols=98 Identities=14% Similarity=0.050 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|-++|..+|..+..|..-|.++++..+++.+..-..+|+.++|+.+...+.++...+....+..|...+.+|..
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYS 106 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 57888999999999999999999999999999999999999999999999999999999999999999999999999965
Q ss_pred hC-----CCcHHHHHHHHHHHHH
Q 039282 122 VL-----PHVDQLWYKYIRMEEI 139 (476)
Q Consensus 122 ~~-----p~~~~lw~~~~~~~~~ 139 (476)
+. |.-+.+|..+...-..
T Consensus 107 l~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 107 LLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred HHhcCCCCCcchHHHHHHHHHhC
Confidence 43 2246677766655433
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.73 E-value=0.013 Score=50.28 Aligned_cols=63 Identities=13% Similarity=0.017 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.+...++..+...|+++.|..++.+++..+|.+..+|..++.++...|+...|..+|+++...
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 566788888999999999999999999999999999999999999999999999999988654
No 245
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.70 E-value=0.0017 Score=61.82 Aligned_cols=91 Identities=22% Similarity=0.108 Sum_probs=83.0
Q ss_pred HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 039282 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLI 149 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~ 149 (476)
...|.++.|+..|-+++.++|.+..++..-+.++++.+..+.|..-++.++.++|++..-+..-+.....+|+++.|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999888877788888889999999999
Q ss_pred HHHHHhcCCCH
Q 039282 150 FDRWMHWTPDQ 160 (476)
Q Consensus 150 ~eral~~~P~~ 160 (476)
|..+++++-+.
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 99999887665
No 246
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.67 E-value=0.23 Score=49.12 Aligned_cols=119 Identities=15% Similarity=0.246 Sum_probs=92.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---C---
Q 039282 89 DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH----VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT---P--- 158 (476)
Q Consensus 89 ~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~----~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~---P--- 158 (476)
.......|+.++.+..+.|+++.|...+.++....+. .+.+-+.++.+....|+...|...++..+... +
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 3445678888888888888888888888888875421 46677778888888888888888877766610 0
Q ss_pred ----------------------C-------HHHHHHHHHHHHHh------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039282 159 ----------------------D-------QQAWLSYIKFELRY------EQVELARQVFERLVQCHPNVVSSWIKYAKF 203 (476)
Q Consensus 159 ----------------------~-------~~~w~~~~~~~~~~------g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~ 203 (476)
. ..++..++.+.... +..+.+...|..++..+|+....|..|+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 0 14567777777777 889999999999999999999999999998
Q ss_pred HHHc
Q 039282 204 EMRR 207 (476)
Q Consensus 204 ~~~~ 207 (476)
+...
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 8643
No 247
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.65 E-value=0.76 Score=45.58 Aligned_cols=168 Identities=11% Similarity=0.008 Sum_probs=116.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-hCCCcHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEE----DCRNHTLWCKYAEFEMI---NKFINHARNVWDRAVA-VLPHVDQL 129 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~----~p~~~~lw~~y~~~e~~---~~~~~~A~~~~~ral~-~~p~~~~l 129 (476)
+.+.-+.+.-.|....+++..+++.+..-.+ .+..+.+-..|+-.+.+ .|+.++|+.++..++. ..+.++++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3456667777788889999999999987766 56678888999999988 8999999999999554 44557888
Q ss_pred HHHHHHHHHHh---------CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHH----HHHHHH---HHHHHhC---
Q 039282 130 WYKYIRMEEIA---------GNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVE----LARQVF---ERLVQCH--- 190 (476)
Q Consensus 130 w~~~~~~~~~~---------g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~----~A~~~~---~r~l~~~--- 190 (476)
+...|.++... ...+.|...|.++....|+...-.+++-++.-.|.-. +.+.+- ...+...
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 88888876442 2478899999999999988644455555555444321 222222 1111111
Q ss_pred CCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 191 PNVVSSWI--KYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 191 p~~~~~w~--~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.+....|. .++.+..-.|+.+.|...+++++.. .|
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l-~~ 336 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL-KP 336 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc-CC
Confidence 11133443 2344445679999999999999988 66
No 248
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.58 E-value=0.5 Score=46.66 Aligned_cols=200 Identities=17% Similarity=0.207 Sum_probs=130.0
Q ss_pred CChHHhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhCCCHHHHHHHHH-----------------HHHHhcCCCH
Q 039282 32 VDPTELYDYRLHKRNDFEDSIRRVP-GDTAVWINYAKWEGSQNEFDRARSMWE-----------------LALEEDCRNH 93 (476)
Q Consensus 32 ~d~eel~e~~~~a~~~~e~~l~~~p-~~~~~w~~~a~~~~~~~~~~~A~~~~e-----------------ral~~~p~~~ 93 (476)
.+.++...+-.+++..+-..+...+ .+...-..+........+++++..+.. .=+...+.++
T Consensus 43 ~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq~L~Elee~~~~~~~~~~~~~~~~~l~~~W~~Rl~~~~~~~ 122 (352)
T PF02259_consen 43 GDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQQLVELEEIIELKSNLSQNPQDLKSLLKRWRSRLPNMQDDF 122 (352)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccch
Confidence 5566777776777777666665533 333333322222222333444444432 2222223344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CHHHHHHHHH
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-----DQQAWLSYIK 168 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P-----~~~~w~~~~~ 168 (476)
..|..+..+ |.++-..+.........|..++.+....|+++.|...+.++....+ .+.+-..+++
T Consensus 123 ~~~~~il~~----------R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~ak 192 (352)
T PF02259_consen 123 SVWEPILSL----------RRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAK 192 (352)
T ss_pred HHHHHHHHH----------HHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHH
Confidence 444433332 1111111112334678899999999999999999999999988653 2367788999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhCCC----------------------------------CHHHHHHHHHHHHHc------C
Q 039282 169 FELRYEQVELARQVFERLVQCHPN----------------------------------VVSSWIKYAKFEMRR------G 208 (476)
Q Consensus 169 ~~~~~g~~~~A~~~~~r~l~~~p~----------------------------------~~~~w~~~a~~~~~~------g 208 (476)
+....|+...|...++..+..... ...++..+|.+.... +
T Consensus 193 llw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~ 272 (352)
T PF02259_consen 193 LLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSE 272 (352)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccc
Confidence 999999999999988887771110 135677888888777 8
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHc
Q 039282 209 EIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERY 250 (476)
Q Consensus 209 ~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~ 250 (476)
..+.+...|..+++. .| .....|..|+.+....
T Consensus 273 ~~~~~~~~~~~a~~~-~~--------~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 273 SSDEILKYYKEATKL-DP--------SWEKAWHSWALFNDKL 305 (352)
T ss_pred cHHHHHHHHHHHHHh-Ch--------hHHHHHHHHHHHHHHH
Confidence 899999999999999 77 6777899898876653
No 249
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.56 E-value=0.028 Score=54.97 Aligned_cols=258 Identities=10% Similarity=0.032 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHhCCCCHH----HHHHHHHHHHhCCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHH
Q 039282 43 HKRNDFEDSIRRVPGDTA----VWINYAKWEGSQNEFDRARSMWELALEE------DCRNHTLWCKYAEFEMINKFINHA 112 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~----~w~~~a~~~~~~~~~~~A~~~~eral~~------~p~~~~lw~~y~~~e~~~~~~~~A 112 (476)
.-...|+.+|..-..+.. ++..++..+.-.+|+++|.+....=|.+ .-.....--.++..+...|.+++|
T Consensus 35 aGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~G~fdeA 114 (639)
T KOG1130|consen 35 AGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVKGAFDEA 114 (639)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhhcccchH
Confidence 567789999987666643 4555566666666666666543322211 111123333445555666778888
Q ss_pred HHHHHHHHHhCC----C--cHHHHHHHHHHHHHhCC-------------HHHHHHHHHHHHhcCCCH-------------
Q 039282 113 RNVWDRAVAVLP----H--VDQLWYKYIRMEEIAGN-------------VAAARLIFDRWMHWTPDQ------------- 160 (476)
Q Consensus 113 ~~~~~ral~~~p----~--~~~lw~~~~~~~~~~g~-------------~~~A~~~~eral~~~P~~------------- 160 (476)
.....|-|.... + -...++.++.++...|. .++++..|+.+.+..-.+
T Consensus 115 ~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aq 194 (639)
T KOG1130|consen 115 LTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQ 194 (639)
T ss_pred HHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhh
Confidence 777776664421 1 24567888888776543 244555566555443221
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--cCCCCCC
Q 039282 161 -QAWLSYIKFELRYEQVELARQVFERLVQCHPN------VVSSWIKYAKFEMRRGEIDRARNVYERALEKK--LADGDGD 231 (476)
Q Consensus 161 -~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~------~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~--~p~~~~~ 231 (476)
.++-.+++.+.-.|+++.|+...+.-+.+... .-.+..++++.+.-.|+++.|.+.|++.+... +.
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg----- 269 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG----- 269 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc-----
Confidence 23444555566678888887766555443221 13467788888999999999999999887641 12
Q ss_pred ChhhHHHHHHHHHHHHHHccchhHHH--HHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhcc
Q 039282 232 DDEGAEQLFVAFAEFEERYKESESEA--LRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERT 308 (476)
Q Consensus 232 ~~~~~~~l~~~~a~~e~~~~~~e~A~--~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~ 308 (476)
+...........+.-+.-..++++|+ +.+.+......++.|-...-|- +++.-+...|+-++|....+..+...
T Consensus 270 ~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~Racw---SLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 270 NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACW---SLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH---HHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 11122334444555555566777772 2322222222222221100010 45666678899999998888887664
No 250
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.54 E-value=0.0075 Score=37.21 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLPH 125 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~ 125 (476)
.+|..++.++...|++++|+..|++++.+.|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 45666666666666666666666666666665
No 251
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.44 E-value=0.011 Score=56.31 Aligned_cols=95 Identities=17% Similarity=0.069 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|..+|.+.+..+|.|+.....-|..|+....|..|..-++.|+.++-..+.++.+-+..-...|+..+|..-++++|.
T Consensus 114 ~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~ 193 (536)
T KOG4648|consen 114 EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLA 193 (536)
T ss_pred hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRM 136 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~ 136 (476)
+.|.+..+-..++.+
T Consensus 194 LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 194 LEPKNIELKKSLARI 208 (536)
T ss_pred hCcccHHHHHHHHHh
Confidence 999988887777665
No 252
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.41 E-value=0.58 Score=49.34 Aligned_cols=136 Identities=16% Similarity=0.089 Sum_probs=75.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCH
Q 039282 64 NYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNV 143 (476)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~ 143 (476)
..+..+...|+++.|+..|-.|-. ..+-++.-+..+...+|..+++..-..... ...+-..+.-+...|++
T Consensus 711 ~wg~hl~~~~q~daainhfiea~~--------~~kaieaai~akew~kai~ildniqdqk~~-s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 711 AWGDHLEQIGQLDAAINHFIEANC--------LIKAIEAAIGAKEWKKAISILDNIQDQKTA-SGYYGEIADHYANKGDF 781 (1636)
T ss_pred HHhHHHHHHHhHHHHHHHHHHhhh--------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc-cccchHHHHHhccchhH
Confidence 334455556666766666655421 233344445556666666666655433222 34455566666777888
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 039282 144 AAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNV-VSSWIKYAKFEMRRGEIDRARNVY 217 (476)
Q Consensus 144 ~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~-~~~w~~~a~~~~~~g~~~~A~~~~ 217 (476)
+.|..+|.++ .....-+.++.+.|.+..|..+-+++.. |.. ..+++.-+.-...+|++.+|..+|
T Consensus 782 e~ae~lf~e~-------~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 782 EIAEELFTEA-------DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHhc-------chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 8888887665 2445556667777777777666655432 221 233444444445555555444433
No 253
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.40 E-value=0.14 Score=49.09 Aligned_cols=146 Identities=11% Similarity=0.039 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEE-DCRN---HTLWCKYAEFEMINKFINHARNVWDR 118 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~-~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~r 118 (476)
.|..+.++.|...|.+.-+|..--..+.-+|+...-+..+++.+-. +|+- .-+--.|+-.+...|-+..|...-++
T Consensus 121 ~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~r 200 (491)
T KOG2610|consen 121 EAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADR 200 (491)
T ss_pred HHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHh
Confidence 4556677888888888877777777777777777788888887754 4443 33334455566777888888888888
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCCCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQ----QAWLSYIKFELRYEQVELARQVFERLVQ 188 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral-~~~P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~ 188 (476)
+++++|.+.=.-...+.+.+..|.+.++.+...+.- .|..+. .-|-.-+.++...++++.|.++|++-+-
T Consensus 201 alqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 201 ALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred hccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 888877655555566666777777777776665432 111111 2233445566666788888888877553
No 254
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.38 E-value=0.17 Score=50.44 Aligned_cols=37 Identities=16% Similarity=0.245 Sum_probs=31.0
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 039282 50 DSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELAL 86 (476)
Q Consensus 50 ~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral 86 (476)
..|..+|.+++..+.++.++..+|+...|..+.+|||
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRAL 67 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERAL 67 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4467788888888888888888888888888888887
No 255
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.33 E-value=0.45 Score=49.30 Aligned_cols=152 Identities=14% Similarity=0.157 Sum_probs=108.2
Q ss_pred hCCCHHHHHHHHHHHHHhcCC-CHH-----HH-HHHHHHHH----HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 039282 71 SQNEFDRARSMWELALEEDCR-NHT-----LW-CKYAEFEM----INKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEI 139 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~~p~-~~~-----lw-~~y~~~e~----~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~ 139 (476)
=.||-+.+.+.+.++.....- .+- +| +..+.... ...+.+.|..+++......|++.-+.+.-+.++..
T Consensus 200 F~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred cCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 368999999999998762211 111 11 11111111 34578999999999999999988888888999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCH--
Q 039282 140 AGNVAAARLIFDRWMHWTPDQ-----QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY--AKFEMRRGEI-- 210 (476)
Q Consensus 140 ~g~~~~A~~~~eral~~~P~~-----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~--a~~~~~~g~~-- 210 (476)
.|+++.|...|++++.....- -.+..++-.+.-.+++++|...|.+.++.... ..+++.| |.++...|+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~ 358 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEE 358 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchh
Confidence 999999999999988433221 22444555566788999999999999997776 3444444 5567778888
Q ss_pred -----HHHHHHHHHHHHh
Q 039282 211 -----DRARNVYERALEK 223 (476)
Q Consensus 211 -----~~A~~~~e~al~~ 223 (476)
++|..+|.++-..
T Consensus 359 ~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 359 AKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hhhhHHHHHHHHHHHHHH
Confidence 6777777766554
No 256
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.33 E-value=0.61 Score=42.62 Aligned_cols=137 Identities=13% Similarity=0.148 Sum_probs=86.3
Q ss_pred CCCHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHH
Q 039282 72 QNEFDRARSMWELALEEDCR------NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAA 145 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~------~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~ 145 (476)
.+.+++|..+|.+|-....- -...++..+++..+.|+-..|-+.|-.|-.. ...++...
T Consensus 27 ~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c---------------ykk~~~~e 91 (288)
T KOG1586|consen 27 SNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC---------------YKKVDPEE 91 (288)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH---------------hhccChHH
Confidence 35678888888887643211 1234455555555555544444444444322 22346777
Q ss_pred HHHHHHHHHhcCCCH-------HHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHH
Q 039282 146 ARLIFDRWMHWTPDQ-------QAWLSYIKFE-LRYEQVELARQVFERLVQCHPN------VVSSWIKYAKFEMRRGEID 211 (476)
Q Consensus 146 A~~~~eral~~~P~~-------~~w~~~~~~~-~~~g~~~~A~~~~~r~l~~~p~------~~~~w~~~a~~~~~~g~~~ 211 (476)
|..++++++.+..+- ......+.++ ....++++|+..|+.+-..... ....+++.+.+-...|++.
T Consensus 92 Av~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 92 AVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 777777777665432 2233444444 3447888999999888775543 2356778888888889999
Q ss_pred HHHHHHHHHHHh
Q 039282 212 RARNVYERALEK 223 (476)
Q Consensus 212 ~A~~~~e~al~~ 223 (476)
+|..+|+.....
T Consensus 172 ~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 172 KAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHH
Confidence 999999988776
No 257
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.21 E-value=0.011 Score=36.44 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCR 91 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~ 91 (476)
.+|..+|.++...|+++.|...|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46778888888888888888888888888774
No 258
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.18 E-value=1.3 Score=43.08 Aligned_cols=165 Identities=12% Similarity=0.061 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------H
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH-----TLWCKYAEFEMINKFINHARNVWDRAVAVLPHV------D 127 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~-----~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~------~ 127 (476)
..++..+++-+...-++.+++++-.-.+.+....+ .....++......+.++++...|+.|+...-.+ -
T Consensus 83 ~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 83 LEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 45667777777777778888888777776533332 445557777888889999999999999875432 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC---C--
Q 039282 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-----------QAWLSYIKFELRYEQVELARQVFERLVQCH---P-- 191 (476)
Q Consensus 128 ~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-----------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~---p-- 191 (476)
+++..++.++..+.++++|.-...++..+..+. -+.+.++..+...|..-.|.+..+.+.++. .
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 678899999999999999988888887654321 223444555566788888888888877642 2
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 192 -NVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 192 -~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.+.....-++++|...|+.+.|-.-|+.|...
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGT 275 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence 23456778899999999999999999999876
No 259
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.16 E-value=0.015 Score=54.77 Aligned_cols=69 Identities=16% Similarity=0.235 Sum_probs=58.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 039282 66 AKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYI 134 (476)
Q Consensus 66 a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~ 134 (476)
|.-....|..++|..+|+.|+.+.|+++.+.+.++.+...++++-.|-.+|-+||.+.|.+.+....-.
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 333445789999999999999999999999999999988889999999999999999998877665443
No 260
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=0.3 Score=50.11 Aligned_cols=157 Identities=15% Similarity=0.050 Sum_probs=100.4
Q ss_pred HHhhHHHHHHHHHHHHHHH------------hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----hcCC------
Q 039282 35 TELYDYRLHKRNDFEDSIR------------RVPGDTAVWINYAKWEGSQNEFDRARSMWELALE-----EDCR------ 91 (476)
Q Consensus 35 eel~e~~~~a~~~~e~~l~------------~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~-----~~p~------ 91 (476)
+...+|+ ++...|.-++. .+|.++...+.++.+...+||.+-|..+.+|+|= ..|.
T Consensus 249 ~hs~sYe-qaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 249 EHSNSYE-QAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred ecchHHH-HHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Confidence 4455566 55555655543 3577788899999999999998888888777772 1222
Q ss_pred ----------CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH-HHhCCHHHHHHHHHHH---
Q 039282 92 ----------NH---TLWCKYAEFEMINKFINHARNVWDRAVAVLPH-VDQLWYKYIRME-EIAGNVAAARLIFDRW--- 153 (476)
Q Consensus 92 ----------~~---~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~-~~~lw~~~~~~~-~~~g~~~~A~~~~era--- 153 (476)
|- -+..+|.......|-+..|.+...-.+++.|. ++-....++.++ ....+++=.+.+++.+
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 22 23345566666778888888888888888887 555444444444 4555666666666655
Q ss_pred --HhcCCCHHHHHHHHHHHHHhhh---HHHHHHHHHHHHHhCCC
Q 039282 154 --MHWTPDQQAWLSYIKFELRYEQ---VELARQVFERLVQCHPN 192 (476)
Q Consensus 154 --l~~~P~~~~w~~~~~~~~~~g~---~~~A~~~~~r~l~~~p~ 192 (476)
+...|+-..=..++.|+.+... ...|+..+.+|+..+|.
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 3344543333455556555443 56677777787777775
No 261
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.09 E-value=0.018 Score=35.58 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 039282 95 LWCKYAEFEMINKFINHARNVWDRAVAVLP 124 (476)
Q Consensus 95 lw~~y~~~e~~~~~~~~A~~~~~ral~~~p 124 (476)
+|...|.++...|+++.|...|++++++.|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344444444444444444444444444444
No 262
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.05 E-value=0.14 Score=53.08 Aligned_cols=117 Identities=13% Similarity=0.161 Sum_probs=93.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhCCHHHHH
Q 039282 72 QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH----VDQLWYKYIRMEEIAGNVAAAR 147 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~----~~~lw~~~~~~~~~~g~~~~A~ 147 (476)
..+.+.|..+++..+...|+++-..+.-+.++...|+++.|...|++++..... ..-.++.++..+...++++.|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 457789999999999999998888888899999999999999999999853322 2344667777788889999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHH--HHHhhhH-------HHHHHHHHHHHH
Q 039282 148 LIFDRWMHWTPDQQAWLSYIKF--ELRYEQV-------ELARQVFERLVQ 188 (476)
Q Consensus 148 ~~~eral~~~P~~~~w~~~~~~--~~~~g~~-------~~A~~~~~r~l~ 188 (476)
..|.+..+...-+..+..|... +...|+. ++|..+|.++-.
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 9999999877767777777643 4566766 677777766543
No 263
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.66 Score=43.99 Aligned_cols=157 Identities=16% Similarity=0.034 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH---HHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYK---YIRM 136 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~---~~~~ 136 (476)
..-+.-+.-....|++..|...|..++...|.+..+-..|++++...|+.+.|..++......... .-|.. -+.+
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~--~~~~~l~a~i~l 212 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD--KAAHGLQAQIEL 212 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh--hHHHHHHHHHHH
Confidence 333444555567788888999999999888888888888999888999988888888765443322 22222 2223
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHH
Q 039282 137 EEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPN--VVSSWIKYAKFEMRRGEIDRA 213 (476)
Q Consensus 137 ~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~--~~~~w~~~a~~~~~~g~~~~A 213 (476)
..+..+.... .-+++.+..+|++ .+-..++..+...|+.+.|.+.+-..+..+-+ +...-..+..+..-.|..+.+
T Consensus 213 l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 213 LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 3333332221 2344445556643 66677777777777777777766666655432 244445555555555544444
Q ss_pred HHHHHH
Q 039282 214 RNVYER 219 (476)
Q Consensus 214 ~~~~e~ 219 (476)
...|+|
T Consensus 292 ~~~~RR 297 (304)
T COG3118 292 VLAYRR 297 (304)
T ss_pred HHHHHH
Confidence 444444
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.76 E-value=1.4 Score=43.77 Aligned_cols=116 Identities=12% Similarity=0.029 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCC--CHHHH
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVAV----LPHVDQLWYKYIRMEEI---AGNVAAARLIFDRWMHWTP--DQQAW 163 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~~----~p~~~~lw~~~~~~~~~---~g~~~~A~~~~eral~~~P--~~~~w 163 (476)
+.+-..+.-.+....+++.-.++.+..-.. .+..+.+-+.|+..+.+ .|+.+.|+.++..++.... +++++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 444455555566667777777777766655 34456677777777777 7788888888877554432 23444
Q ss_pred HHHHHHHHH---------hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 039282 164 LSYIKFELR---------YEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209 (476)
Q Consensus 164 ~~~~~~~~~---------~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~ 209 (476)
--.+..+.. ....++|...|.++....|+ .-.-++++.++.-.|.
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 444433321 22467777777777777765 4455666666665554
No 265
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.62 E-value=0.2 Score=41.54 Aligned_cols=26 Identities=19% Similarity=0.322 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 194 VSSWIKYAKFEMRRGEIDRARNVYER 219 (476)
Q Consensus 194 ~~~w~~~a~~~~~~g~~~~A~~~~e~ 219 (476)
+..|..||.++...|++.+|.+||+.
T Consensus 99 AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 99 ALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 45566666666666666666666654
No 266
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.58 E-value=0.03 Score=56.03 Aligned_cols=92 Identities=15% Similarity=0.102 Sum_probs=68.7
Q ss_pred HHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHH
Q 039282 69 EGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARL 148 (476)
Q Consensus 69 ~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~ 148 (476)
....++++.|+..|.+|++++|+++.+|-.-+....+.+++..|..-+.+|++..|.....++.-+.....++.+-.|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34456677777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhcCCCH
Q 039282 149 IFDRWMHWTPDQ 160 (476)
Q Consensus 149 ~~eral~~~P~~ 160 (476)
.|+.+....|+.
T Consensus 94 ~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 94 DLEKVKKLAPND 105 (476)
T ss_pred HHHHhhhcCcCc
Confidence 777777777765
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.67 Score=43.93 Aligned_cols=122 Identities=17% Similarity=0.084 Sum_probs=94.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHH---HHHHHHHhhhH
Q 039282 100 AEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLS---YIKFELRYEQV 176 (476)
Q Consensus 100 ~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~---~~~~~~~~g~~ 176 (476)
+.-....|++..|..+|..++...|.+..+-..|+.++...|+.+.|..++...-..... ..|.. .+.+..+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHHHHhcC
Confidence 334567899999999999999999999999999999999999999999999876322222 22332 34444444333
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 177 ~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
... ..+++-+..+|++.+.-+.++..+...|+.+.|.+.+-..+..
T Consensus 220 ~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 220 PEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 332 2345556779999999999999999999999999988888776
No 268
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.53 E-value=0.24 Score=45.51 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=55.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh--------cCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 039282 64 NYAKWEGSQNEFDRARSMWELALEE--------DCRN----------HTLWCKYAEFEMINKFINHARNVWDRAVAVLPH 125 (476)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~eral~~--------~p~~----------~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~ 125 (476)
.-|+-+...|++.+|.+.|..|+.. .|.. .++.++|.++.+..|++-++..-....|...|+
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~ 262 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG 262 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc
Confidence 3344444566666776666666531 2332 355556666666666666666666666666666
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 039282 126 VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 126 ~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~ 159 (476)
+.+.++.-+......=|.++|+.=|..++..+|.
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 6666666665555555556666666666666554
No 269
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.34 E-value=1.1 Score=44.70 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=99.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------------CcHH---HHHHHHH
Q 039282 85 ALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLP--------------------------HVDQ---LWYKYIR 135 (476)
Q Consensus 85 al~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p--------------------------~~~~---lw~~~~~ 135 (476)
.|..+|.+++..+.++++...+|+...|..+.+|||-... .+-. ..+.|+.
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 3568899999999999999999999999999999873321 1222 3456777
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCH--HHHHHHHHH-HHHhhhHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHH
Q 039282 136 MEEIAGNVAAARLIFDRWMHWTPDQ--QAWLSYIKF-ELRYEQVELARQVFERLVQ--------CHPNVVSSWIKYAKFE 204 (476)
Q Consensus 136 ~~~~~g~~~~A~~~~eral~~~P~~--~~w~~~~~~-~~~~g~~~~A~~~~~r~l~--------~~p~~~~~w~~~a~~~ 204 (476)
...+.|-+..|.++..=.+.++|.. -.-...+++ ..+.++++--..+++.... .-|+ .-+..+-.+
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn---~a~S~aLA~ 188 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN---FAFSIALAY 188 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc---HHHHHHHHH
Confidence 7888899999999999999999983 222333333 3566777666666666544 2344 333444444
Q ss_pred HHcCCH---------------HHHHHHHHHHHHhhcC
Q 039282 205 MRRGEI---------------DRARNVYERALEKKLA 226 (476)
Q Consensus 205 ~~~g~~---------------~~A~~~~e~al~~~~p 226 (476)
...++. +.|...+.+|+.. +|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~-fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILR-FP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHH-hH
Confidence 445555 8999999999999 88
No 270
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.17 E-value=0.037 Score=55.45 Aligned_cols=112 Identities=13% Similarity=-0.007 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|.++|..+|++...|-.-+..++..+++..|..-+-+|++.+|.....++.-+...+..+.+.+|...|+....
T Consensus 21 d~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~ 100 (476)
T KOG0376|consen 21 DVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKK 100 (476)
T ss_pred HHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhh
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP 158 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P 158 (476)
+.|+.+.+-..+..+... ..+.-|++++.-.+
T Consensus 101 l~Pnd~~~~r~~~Ec~~~-----vs~~~fe~ai~~~~ 132 (476)
T KOG0376|consen 101 LAPNDPDATRKIDECNKI-----VSEEKFEKAILTPE 132 (476)
T ss_pred cCcCcHHHHHHHHHHHHH-----HHHHhhhhcccCCc
Confidence 999988887777665332 23455666664443
No 271
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.04 E-value=0.85 Score=42.42 Aligned_cols=166 Identities=15% Similarity=0.113 Sum_probs=122.9
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHH-HHHHHHH
Q 039282 74 EFDRARSMWELALEEDCRNHTLWCKYAEFEMI-NKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVA-AARLIFD 151 (476)
Q Consensus 74 ~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~-~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~-~A~~~~e 151 (476)
...+|..+-+.++.++|-+.++|.---.+... ..+..+-...+++.+...|.+-++|..--.+.+..|+.. .-..+..
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~ 137 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTK 137 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHH
Confidence 45789999999999999999999876665544 346788889999999999999999999999999999877 5567788
Q ss_pred HHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCC-----HHHHHHHHHHHHHhh
Q 039282 152 RWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR-RGE-----IDRARNVYERALEKK 224 (476)
Q Consensus 152 ral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~-~g~-----~~~A~~~~e~al~~~ 224 (476)
+++..+..+ .+|...--.....+.++.-.......+..+--+-.+|..---+... .|- .+.-...-...|..
T Consensus 138 ~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~- 216 (318)
T KOG0530|consen 138 LMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILL- 216 (318)
T ss_pred HHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHh-
Confidence 888877665 7888777777777889988888889888776666677642111111 222 23344555667777
Q ss_pred cCCCCCCChhhHHHHHHHHHHHHH
Q 039282 225 LADGDGDDDEGAEQLFVAFAEFEE 248 (476)
Q Consensus 225 ~p~~~~~~~~~~~~l~~~~a~~e~ 248 (476)
.| .+...|.-..-++.
T Consensus 217 vP--------~NeSaWnYL~G~l~ 232 (318)
T KOG0530|consen 217 VP--------NNESAWNYLKGLLE 232 (318)
T ss_pred CC--------CCccHHHHHHHHHH
Confidence 77 55566665555544
No 272
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.96 E-value=0.062 Score=33.81 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALE 87 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~ 87 (476)
+|..+|.++...|++++|+++|+++|.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888888888888888888553
No 273
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.89 E-value=0.047 Score=33.19 Aligned_cols=31 Identities=10% Similarity=0.091 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCR 91 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~ 91 (476)
+++.+|.++...|++++|+.+|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3455566666666666666666666666665
No 274
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.86 E-value=6.3 Score=41.74 Aligned_cols=128 Identities=12% Similarity=0.018 Sum_probs=79.4
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH----------HcCCHHHHHHHHH
Q 039282 48 FEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM----------INKFINHARNVWD 117 (476)
Q Consensus 48 ~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~----------~~~~~~~A~~~~~ 117 (476)
-.+.++.|| ++.+|..+|......-+++.|...|-|+-. ..-+.+--++..+.. --|.+++|..+|-
T Consensus 682 A~qfiEdnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~d--Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yl 758 (1189)
T KOG2041|consen 682 AIQFIEDNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGD--YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL 758 (1189)
T ss_pred HHHHHhcCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcc--ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence 335567778 579999999999988888888888888632 223333334433332 2367788888775
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039282 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD---QQAWLSYIKFELRYEQVELARQVFERL 186 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~---~~~w~~~~~~~~~~g~~~~A~~~~~r~ 186 (476)
.+-..+ ..+.+...+|++-.+.+++...-.-..+ ..+|...+.......+++.|++.|...
T Consensus 759 d~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 759 DADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 553221 2233444556665555555543222222 266777777777777788888877764
No 275
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.82 E-value=0.063 Score=32.98 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLP 124 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p 124 (476)
.+|..++.++...|+++.|...|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3566666666666666666666666666655
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.75 E-value=1.3 Score=39.35 Aligned_cols=65 Identities=8% Similarity=0.042 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCR---NHTLWCKYAEFEMINKFINHARNVWDRAVAVLP 124 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~---~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p 124 (476)
..+..+|.++.+.||.+.|.+.|.++...... -..+++..+.+.+..+++.++.....++-....
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 47779999999999999999999998875433 257888888888889999999988888876543
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=3.5 Score=38.11 Aligned_cols=83 Identities=10% Similarity=0.084 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHc
Q 039282 141 GNVAAARLIFDRWMHWTPDQ-------QAWLSYIKFELRYEQVELARQVFERLVQ------CHPNVVSSWIKYAKFEMRR 207 (476)
Q Consensus 141 g~~~~A~~~~eral~~~P~~-------~~w~~~~~~~~~~g~~~~A~~~~~r~l~------~~p~~~~~w~~~a~~~~~~ 207 (476)
-+++.|..+|.+++...-.. .......+.+.+...+++|-..|.+-.. ..|+....+...+.++.-.
T Consensus 124 v~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~ 203 (308)
T KOG1585|consen 124 VKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYA 203 (308)
T ss_pred CCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhH
Confidence 46788888888887654321 2344444566777778777666655332 3345456677777777777
Q ss_pred CCHHHHHHHHHHHHHh
Q 039282 208 GEIDRARNVYERALEK 223 (476)
Q Consensus 208 g~~~~A~~~~e~al~~ 223 (476)
.++..|...|..+.+.
T Consensus 204 ~Dyv~aekc~r~~~qi 219 (308)
T KOG1585|consen 204 HDYVQAEKCYRDCSQI 219 (308)
T ss_pred HHHHHHHHHhcchhcC
Confidence 8999999999987765
No 278
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.57 E-value=0.43 Score=37.14 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC
Q 039282 46 NDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN 92 (476)
Q Consensus 46 ~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~ 92 (476)
..+++.+..+|.+....+.+|..+...|+++.|...+-.++..++..
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 44566666666666666666666666666666666666666655543
No 279
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.56 E-value=8.1 Score=41.60 Aligned_cols=201 Identities=14% Similarity=0.125 Sum_probs=125.2
Q ss_pred HHHHHHHHhhccCCCCCCChHHhhHHH---HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Q 039282 15 AEQILRESQEHFGEQKSVDPTELYDYR---LHKRNDFEDSIRRVPGD----TAVWINYAKWEGS-QNEFDRARSMWELAL 86 (476)
Q Consensus 15 a~q~l~~a~~~~~~~~i~d~eel~e~~---~~a~~~~e~~l~~~p~~----~~~w~~~a~~~~~-~~~~~~A~~~~eral 86 (476)
|+.-+.-|+...+.. .+.+++.+|. .-+.+.++-+++..+.. ..+.++||.++.. ..+++.|+..+++++
T Consensus 10 Aeey~~~A~~~~~~~--~~~~~l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~ 87 (608)
T PF10345_consen 10 AEEYLEKAHSLATKV--KSEEQLKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAI 87 (608)
T ss_pred HHHHHHHhHHHHHhc--CChhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555543333 8888899987 67888898888655544 3578899999884 689999999999999
Q ss_pred HhcCCC--HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH-----HHhCCHHHHHHHHHHHH
Q 039282 87 EEDCRN--HTL----WCKYAEFEMINKFINHARNVWDRAVAVLPH-VDQLWYKYIRME-----EIAGNVAAARLIFDRWM 154 (476)
Q Consensus 87 ~~~p~~--~~l----w~~y~~~e~~~~~~~~A~~~~~ral~~~p~-~~~lw~~~~~~~-----~~~g~~~~A~~~~eral 154 (476)
.+...+ .++ -..++.++.+.+... |.+.++++++..-. ....|.....+. ...+++..|...++.+.
T Consensus 88 ~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~ 166 (608)
T PF10345_consen 88 LLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIA 166 (608)
T ss_pred HhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 876442 221 223355555556555 99999999987654 222343333332 22378999999999988
Q ss_pred hcCC--CH---HHHHHHHH--HHHHhhhHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHH--HHcCCHHHHHH
Q 039282 155 HWTP--DQ---QAWLSYIK--FELRYEQVELARQVFERLVQC----------HPNVVSSWIKYAKFE--MRRGEIDRARN 215 (476)
Q Consensus 155 ~~~P--~~---~~w~~~~~--~~~~~g~~~~A~~~~~r~l~~----------~p~~~~~w~~~a~~~--~~~g~~~~A~~ 215 (476)
...- ++ .+...+.. +..+.+..+.+.+...++... ++....+|..+..+. ...|++..+..
T Consensus 167 ~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~ 246 (608)
T PF10345_consen 167 QLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQ 246 (608)
T ss_pred HHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7652 22 22222222 233445566666666665321 122356677766654 46677666555
Q ss_pred HHH
Q 039282 216 VYE 218 (476)
Q Consensus 216 ~~e 218 (476)
...
T Consensus 247 ~L~ 249 (608)
T PF10345_consen 247 KLK 249 (608)
T ss_pred HHH
Confidence 544
No 280
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.47 E-value=0.48 Score=36.87 Aligned_cols=76 Identities=13% Similarity=-0.008 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 039282 78 ARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV--DQLWYKYIRMEEIAGNVAAARLIFDRW 153 (476)
Q Consensus 78 A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~--~~lw~~~~~~~~~~g~~~~A~~~~era 153 (476)
....+++++..+|.++.+.+.++..++..|+++.|...+-.++...|.. ...-..++.+...+|.-+....-|.|-
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRk 84 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRK 84 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence 3566788889999999999999999999999999999999999888763 566667777777777644444444443
No 281
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.44 E-value=3 Score=36.08 Aligned_cols=84 Identities=8% Similarity=-0.137 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEE 138 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~ 138 (476)
++..+.....-...++.+.+..++...-.+.|..+.+-..-+.+.+..|++..|+.+|+......|..+-.=-.++.++.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34556666666777888888888888888888888888888888888888888888888887777765544444444444
Q ss_pred HhCC
Q 039282 139 IAGN 142 (476)
Q Consensus 139 ~~g~ 142 (476)
..|+
T Consensus 90 ~~~D 93 (160)
T PF09613_consen 90 ALGD 93 (160)
T ss_pred HcCC
Confidence 4443
No 282
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.30 E-value=0.26 Score=49.48 Aligned_cols=135 Identities=11% Similarity=0.034 Sum_probs=98.3
Q ss_pred hCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCC--------cHHHHHHHHHHHHHhC
Q 039282 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV-AVLPH--------VDQLWYKYIRMEEIAG 141 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral-~~~p~--------~~~lw~~~~~~~~~~g 141 (476)
+..+...+..-...+..+..+++.....-.+++...|++..|..++.+.= ...|. .--+|+.++-+..+.|
T Consensus 218 q~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~ 297 (696)
T KOG2471|consen 218 QTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLG 297 (696)
T ss_pred HHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehh
Confidence 33334444444444444555667777777888888899888888776542 22222 3456888888888888
Q ss_pred CHHHHHHHHHHHHh-c--------CCC----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039282 142 NVAAARLIFDRWMH-W--------TPD----------QQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAK 202 (476)
Q Consensus 142 ~~~~A~~~~eral~-~--------~P~----------~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~ 202 (476)
.+..+..+|.++++ . .|. ..+.+..+..+...|+.-.|.+.|.+++..+..+|.+|++++.
T Consensus 298 ~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAE 377 (696)
T KOG2471|consen 298 CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAE 377 (696)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 88888888888885 1 121 1567777788889999999999999999998888999999998
Q ss_pred HHH
Q 039282 203 FEM 205 (476)
Q Consensus 203 ~~~ 205 (476)
...
T Consensus 378 cCi 380 (696)
T KOG2471|consen 378 CCI 380 (696)
T ss_pred HHH
Confidence 875
No 283
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.27 E-value=0.061 Score=48.73 Aligned_cols=59 Identities=17% Similarity=0.329 Sum_probs=37.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 102 FEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 102 ~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
+....++.+.|..+|.+++.+.|....-|+.++.+.+..|+++.|...|+++++.+|..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34445566666666666666666666666666666666666666666666666666653
No 284
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=2.5 Score=40.79 Aligned_cols=101 Identities=12% Similarity=0.066 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCR----NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYI 134 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~----~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~ 134 (476)
...+..-|+.+....++..|+..|..+|..... +..++..-+.+....||+-.|++-..+++...|.+.+..+.-+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 456778888889999999999999999987544 4567888888889999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCC
Q 039282 135 RMEEIAGNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 135 ~~~~~~g~~~~A~~~~eral~~~P~ 159 (476)
.+...+..+..|....+..+..+-.
T Consensus 161 kc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 9999888889888888887665443
No 285
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=93.97 E-value=0.14 Score=48.44 Aligned_cols=64 Identities=16% Similarity=0.226 Sum_probs=57.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 97 CKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 97 ~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
++.+.-..+.|+.++|..+|+.|+.+.|+++++...++.+.+..+++-.|-.+|-+++...|.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~n 183 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGN 183 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCc
Confidence 3444445678999999999999999999999999999999999899999999999999999986
No 286
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=1.6 Score=40.28 Aligned_cols=115 Identities=16% Similarity=0.206 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHH
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFEL 171 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~-~~~w~~~~~~~~ 171 (476)
+++...-+.-+.+.|++.+|...|..|+....+ ..+-+.-|.. .|++++.. ..+..+|.+...
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~--------L~lkEkP~e~--------eW~eLdk~~tpLllNy~QC~L 241 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRN--------LQLKEKPGEP--------EWLELDKMITPLLLNYCQCLL 241 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHH--------HHhccCCCCh--------HHHHHHHhhhHHHHhHHHHHh
Confidence 345555566667777788888877777654311 0000000110 01111111 134556666666
Q ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 172 RYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 172 ~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
..|++-++.+.....+..+|.++.+++.-|......=+.++|+.-|..+++.
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666555666666666666655
No 287
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.58 E-value=2.3 Score=37.87 Aligned_cols=113 Identities=14% Similarity=0.054 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCCCHH---HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 46 NDFEDSIRRVPGDTA---VWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRA 119 (476)
Q Consensus 46 ~~~e~~l~~~p~~~~---~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ra 119 (476)
...++.+..||.+.- .-+.+|..+...|+++.|...+..++....+. .-+-++++.+....|.++.|..+++..
T Consensus 73 ~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 73 AAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 334444444543321 23455555566666666666666666322221 233455566666666666666665543
Q ss_pred HHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 039282 120 VAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 120 l~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~ 159 (476)
.... -.+..-..-+.++...|+-.+||..|++++...++
T Consensus 153 ~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 153 KEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCC
Confidence 2210 01222333455556666666666666666665543
No 288
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=93.55 E-value=0.11 Score=30.40 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCR 91 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~ 91 (476)
.|..+|.++...|+++.|...|.+++.++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566666666666666666666666666554
No 289
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.52 E-value=0.17 Score=30.61 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 039282 96 WCKYAEFEMINKFINHARNVWDRAVAVLPH 125 (476)
Q Consensus 96 w~~y~~~e~~~~~~~~A~~~~~ral~~~p~ 125 (476)
++.++.++...|+++.|...|++.+...|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445555566666666666666666666664
No 290
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.36 E-value=0.12 Score=46.81 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=54.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 039282 66 AKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV 126 (476)
Q Consensus 66 a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~ 126 (476)
+.+....+|.+.|.+.|.++|.+-|....-|.+++.+..+.|.++.|...|+..++++|.+
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4555677899999999999999999999999999999999999999999999999999874
No 291
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.35 E-value=0.2 Score=31.46 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 196 SWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 196 ~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
+|..+|.++.+.|++++|..+|++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778999999999999999999996644
No 292
>PRK10941 hypothetical protein; Provisional
Probab=93.26 E-value=1.3 Score=42.18 Aligned_cols=63 Identities=11% Similarity=-0.178 Sum_probs=46.6
Q ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 039282 68 WEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLW 130 (476)
Q Consensus 68 ~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw 130 (476)
.+.+.+++++|..+.++.+..+|+++.-|..-|-++...|.+..|+.-++..+..+|..+..-
T Consensus 190 ~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 190 ALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 445667777777777777777777777777777777777777777777777777777755443
No 293
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.93 E-value=28 Score=42.37 Aligned_cols=219 Identities=17% Similarity=0.169 Sum_probs=140.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------c
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVL-PH----------V 126 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~-p~----------~ 126 (476)
-.+.|+.+|++....|.+++|....=.|.+.. -+.+....+.++...|+-..|..+++..+..+ |+ +
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 36899999999999999999999998888765 57888999999999999999999999999553 32 1
Q ss_pred ------HHHHHHHHHHHHHhCCHH--HHHHHHHHHHhcCCCH-----HHHHHHHHHHH--------HhhhHHH---HHHH
Q 039282 127 ------DQLWYKYIRMEEIAGNVA--AARLIFDRWMHWTPDQ-----QAWLSYIKFEL--------RYEQVEL---ARQV 182 (476)
Q Consensus 127 ------~~lw~~~~~~~~~~g~~~--~A~~~~eral~~~P~~-----~~w~~~~~~~~--------~~g~~~~---A~~~ 182 (476)
...-..++.+....+|++ ...+.|..+....|.. .+-..|..++. +.|++.. +.-.
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~ 1826 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYF 1826 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHH
Confidence 234555666666667643 5678899999988842 11122333332 2345544 4444
Q ss_pred HHHHHHhC--------CCCHHHHHHHHHHHHH---c-------CCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 039282 183 FERLVQCH--------PNVVSSWIKYAKFEMR---R-------GEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFA 244 (476)
Q Consensus 183 ~~r~l~~~--------p~~~~~w~~~a~~~~~---~-------g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a 244 (476)
|.+++... |.-...|+.++.-... . ++....-.+.++++.. +| + ...+.+|.
T Consensus 1827 ~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in~~i~~~~~~-lp-----~----Y~f~ta~s 1896 (2382)
T KOG0890|consen 1827 FGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLINSLIEEALEH-LP-----T----YQFYTAYS 1896 (2382)
T ss_pred HHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHHHHHHHHHHh-Cc-----c----hHHHHHHH
Confidence 45665433 3334567775444332 2 2333445556666666 66 2 33455565
Q ss_pred HHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 039282 245 EFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASA 324 (476)
Q Consensus 245 ~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~ 324 (476)
++..+. |-. ...-+.-.+.+.-+++...|.-.+|...+.+-++.
T Consensus 1897 QLlSRi---------------------------cH~---------~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~ 1940 (2382)
T KOG0890|consen 1897 QLLSRI---------------------------CHP---------NQDVARVLKHIIAKLVLAYPQQTLWQSAALSKSNV 1940 (2382)
T ss_pred HHHHHH---------------------------cCC---------chHHHHHHHHHHHHHHHhCchHHHHHHHHHHhccc
Confidence 543331 100 01111224566777778889888999999988877
No 294
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.87 E-value=1.8 Score=44.69 Aligned_cols=118 Identities=15% Similarity=0.053 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhhHHHHHHHHH
Q 039282 108 FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ---QAWLSYIKFELRYEQVELARQVFE 184 (476)
Q Consensus 108 ~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~---~~w~~~~~~~~~~g~~~~A~~~~~ 184 (476)
.++....+...+++..|.+..+...-..+-...|+..+|..++.+++.+.|.. -+.++++-++.+.|....|--++.
T Consensus 194 ~~~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILh 273 (886)
T KOG4507|consen 194 SIDDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILH 273 (886)
T ss_pred hHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheee
Confidence 35666778888889999888887777777788899999999999999998874 568899999999999999999998
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 185 RLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 185 r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.++.-.|.-....+.++..+...|+++.....|..+.+. .|
T Consensus 274 AA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~-~p 314 (886)
T KOG4507|consen 274 AALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA-RP 314 (886)
T ss_pred hhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhcc-Cc
Confidence 888877766666888899999999999988889888876 44
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.79 E-value=1.2 Score=42.37 Aligned_cols=60 Identities=13% Similarity=0.023 Sum_probs=32.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 62 w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
...++..+...|+++.+.+.+++.+..+|.+-.+|..+...+...|+...|+..|++.-+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444555555555555555555555555555555555555555555555555555433
No 296
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.64 E-value=13 Score=38.60 Aligned_cols=152 Identities=18% Similarity=0.188 Sum_probs=109.7
Q ss_pred CCHHHHHHHHHHHHHh------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC----------
Q 039282 73 NEFDRARSMWELALEE------------DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV-----LPH---------- 125 (476)
Q Consensus 73 ~~~~~A~~~~eral~~------------~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~-----~p~---------- 125 (476)
..+++|...|.-|..+ .|.+++..+..+.+...+|+.+.|..+.+|||-. .|.
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 3567888888887754 3556788999999999999988888888888732 221
Q ss_pred ------cH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH--HHHHHHHHH-HHHhhhHHHHHHHHHHH-----HH
Q 039282 126 ------VD---QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ--QAWLSYIKF-ELRYEQVELARQVFERL-----VQ 188 (476)
Q Consensus 126 ------~~---~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~--~~w~~~~~~-~~~~g~~~~A~~~~~r~-----l~ 188 (476)
+- .+.+.|.+...+.|=+..|.....-.++++|.. -.....++. ..+..+|.=.+.+++.+ +.
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~ 411 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLS 411 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHh
Confidence 12 234456666677788999999999999999983 223344443 45677777777777666 44
Q ss_pred hCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhcC
Q 039282 189 CHPNVVSSWIKYAKFEMRRGE---IDRARNVYERALEKKLA 226 (476)
Q Consensus 189 ~~p~~~~~w~~~a~~~~~~g~---~~~A~~~~e~al~~~~p 226 (476)
..|+ ...=..+|.|+.+... .+.|+..+.+|+.. +|
T Consensus 412 ~~PN-~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~-~P 450 (665)
T KOG2422|consen 412 QLPN-FGYSLALARFFLRKNEEDDRQSALNALLQALKH-HP 450 (665)
T ss_pred hcCC-chHHHHHHHHHHhcCChhhHHHHHHHHHHHHHh-Cc
Confidence 5677 5555677888877655 67899999999998 77
No 297
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.58 E-value=4.9 Score=39.94 Aligned_cols=168 Identities=13% Similarity=0.063 Sum_probs=118.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh------------CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039282 38 YDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGS------------QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI 105 (476)
Q Consensus 38 ~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~------------~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~ 105 (476)
++|-..+.+.=.+.+..||..+..|.--=..... +.-++.-..+.+.+|.++|++..+|.....++.+
T Consensus 42 ~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~ 121 (421)
T KOG0529|consen 42 KEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK 121 (421)
T ss_pred cccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 3344456666668888999998888732222211 1234556677889999999999999999999887
Q ss_pred cCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC----CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH------
Q 039282 106 NKF--INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG----NVAAARLIFDRWMHWTPDQ-QAWLSYIKFELR------ 172 (476)
Q Consensus 106 ~~~--~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g----~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~------ 172 (476)
++. ++.=..+.+++++.+|++-..|.---.+..... ...+=.....+++.-++.+ .+|.....+...
T Consensus 122 ~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~ 201 (421)
T KOG0529|consen 122 NPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEA 201 (421)
T ss_pred CCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccc
Confidence 764 688899999999999999999975555443332 1344467778888888877 889887777652
Q ss_pred hhh------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039282 173 YEQ------VELARQVFERLVQCHPNVVSSWIKYAKFEM 205 (476)
Q Consensus 173 ~g~------~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~ 205 (476)
.|+ +..-...-..++-.+|++...|..+.-++.
T Consensus 202 ~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~ 240 (421)
T KOG0529|consen 202 DGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLG 240 (421)
T ss_pred cCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhc
Confidence 231 233344556677789999999987544443
No 298
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.56 E-value=0.11 Score=49.79 Aligned_cols=116 Identities=21% Similarity=0.165 Sum_probs=91.0
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhhHHHHH
Q 039282 104 MINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ---QAWLSYIKFELRYEQVELAR 180 (476)
Q Consensus 104 ~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~---~~w~~~~~~~~~~g~~~~A~ 180 (476)
...|.++.|...|.+++.+.|.+..++..-+.++..++....|+.=+..++.++|+. .-|..|+ ..-.|++++|.
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A--~rllg~~e~aa 202 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYA--ERLLGNWEEAA 202 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHH--HHHhhchHHHH
Confidence 456889999999999999999999999999999999999999999999999999986 3344444 44568899999
Q ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 181 QVFERLVQCHPNV-VSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 181 ~~~~r~l~~~p~~-~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
..+..+.+++-+. ...|++ ...-..+...+-+..|+++.+.
T Consensus 203 ~dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~~e 244 (377)
T KOG1308|consen 203 HDLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERAREE 244 (377)
T ss_pred HHHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHHHH
Confidence 9999999876651 333443 3445556677777777777665
No 299
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.25 E-value=6.9 Score=36.75 Aligned_cols=151 Identities=9% Similarity=0.125 Sum_probs=90.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHhCC
Q 039282 73 NEFDRARSMWELALEEDCRNH----TLWCKYAEFEMINKFINHARNVWDRAVAVLP------HVDQLWYKYIRMEEIAGN 142 (476)
Q Consensus 73 ~~~~~A~~~~eral~~~p~~~----~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p------~~~~lw~~~~~~~~~~g~ 142 (476)
.+.+.|.+-|++.|++.|... .+.-..+.+..+.+++.+-...|.+.+.... .+.........+.....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 356677777777777766543 3445556666667777776666666665432 133444445555555556
Q ss_pred HHHHHHHHHHHHhcC---CCHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHhCCC------------CHHHHHHHHHH
Q 039282 143 VAAARLIFDRWMHWT---PDQQAW----LSYIKFELRYEQVELARQVFERLVQCHPN------------VVSSWIKYAKF 203 (476)
Q Consensus 143 ~~~A~~~~eral~~~---P~~~~w----~~~~~~~~~~g~~~~A~~~~~r~l~~~p~------------~~~~w~~~a~~ 203 (476)
.+.-...|+..+... .+..+| ..++.++...|++.+-..++.+.-+.|.+ -.+++..-+..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 665556666544332 223444 34667777777777777777666554432 12444444666
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 039282 204 EMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 204 ~~~~g~~~~A~~~~e~al~~ 223 (476)
|..+.+...-..+|+.++..
T Consensus 201 YT~qKnNKkLK~lYeqalhi 220 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHI 220 (440)
T ss_pred hhhhcccHHHHHHHHHHHHh
Confidence 77777777888888888865
No 300
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=7.8 Score=37.52 Aligned_cols=92 Identities=15% Similarity=0.048 Sum_probs=44.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 039282 98 KYAEFEMINKFINHARNVWDRAVAVLPH----VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELR 172 (476)
Q Consensus 98 ~y~~~e~~~~~~~~A~~~~~ral~~~p~----~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~ 172 (476)
.=|..+++.+.+..|+..|..++...-. +..++..-+....-+||+-.|+.=..+++..+|.+ .+...-+.....
T Consensus 86 eeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e 165 (390)
T KOG0551|consen 86 EEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE 165 (390)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH
Confidence 3344555555566666666666554211 23344444444444555555555555555555544 333333334444
Q ss_pred hhhHHHHHHHHHHHHHh
Q 039282 173 YEQVELARQVFERLVQC 189 (476)
Q Consensus 173 ~g~~~~A~~~~~r~l~~ 189 (476)
...++.|....+..+..
T Consensus 166 Le~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHhhhhhh
Confidence 44444454444444443
No 301
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.02 E-value=1.3 Score=44.72 Aligned_cols=139 Identities=11% Similarity=0.081 Sum_probs=107.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH-HhcCCC------H---HHHHHHHHHHH
Q 039282 102 FEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRW-MHWTPD------Q---QAWLSYIKFEL 171 (476)
Q Consensus 102 ~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~era-l~~~P~------~---~~w~~~~~~~~ 171 (476)
+++...+...+..-..-++....+++.....-.+++...||+..|.+++-+. +...|. - -.|..++.+..
T Consensus 215 ~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~ 294 (696)
T KOG2471|consen 215 FLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY 294 (696)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee
Confidence 3444455555555555555555677888888899999999999999887653 333343 1 35899999999
Q ss_pred HhhhHHHHHHHHHHHHH-h--------CC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCCh
Q 039282 172 RYEQVELARQVFERLVQ-C--------HP---------NVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDD 233 (476)
Q Consensus 172 ~~g~~~~A~~~~~r~l~-~--------~p---------~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~ 233 (476)
+.|.+.-+..+|.++++ . .| .+.++.++.+-.+...|+.-.|.+.|.+++.. +.
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh------- 366 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FH------- 366 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-Hh-------
Confidence 99999999999999995 1 11 24578889999999999999999999999998 76
Q ss_pred hhHHHHHHHHHHHHHH
Q 039282 234 EGAEQLFVAFAEFEER 249 (476)
Q Consensus 234 ~~~~~l~~~~a~~e~~ 249 (476)
.++.+|...+..+.-
T Consensus 367 -~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 367 -RNPRLWLRLAECCIM 381 (696)
T ss_pred -cCcHHHHHHHHHHHH
Confidence 778899999987543
No 302
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.01 E-value=4.5 Score=42.40 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=24.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 039282 285 IHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASA 324 (476)
Q Consensus 285 ~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~ 324 (476)
.++....++|++|-.+-++..+.- ++|+..|+++....
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~~--~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEFK--DDVYMPYAQWLAEN 817 (1081)
T ss_pred hhheeecccchHhHhhhhhCcccc--ccccchHHHHhhhh
Confidence 344556788888877766544433 35677777777766
No 303
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.57 E-value=4.7 Score=35.98 Aligned_cols=92 Identities=21% Similarity=0.239 Sum_probs=68.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 039282 132 KYIRMEEIAGNVAAARLIFDRWMHWTPDQ----QAWLSYIKFELRYEQVELARQVFERLVQCHPNV-VSSWIKYAKFEMR 206 (476)
Q Consensus 132 ~~~~~~~~~g~~~~A~~~~eral~~~P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~-~~~w~~~a~~~~~ 206 (476)
..+..+...|+++.|...+..++....+. -+-..++.+..+.|.++.|..+++.... ++. +-.-..-++.+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~ 171 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHH
Confidence 44555667799999999999998765554 2345677788899999999998877432 211 1123334888999
Q ss_pred cCCHHHHHHHHHHHHHhhcC
Q 039282 207 RGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 207 ~g~~~~A~~~~e~al~~~~p 226 (476)
.|+.+.||..|++++.. .+
T Consensus 172 kg~k~~Ar~ay~kAl~~-~~ 190 (207)
T COG2976 172 KGDKQEARAAYEKALES-DA 190 (207)
T ss_pred cCchHHHHHHHHHHHHc-cC
Confidence 99999999999999998 55
No 304
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.18 E-value=13 Score=34.89 Aligned_cols=182 Identities=10% Similarity=0.132 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-----C-CCHHHHHHHHHHHHHcCCHHH
Q 039282 42 LHKRNDFEDSIRRVPGD----TAVWINYAKWEGSQNEFDRARSMWELALEED-----C-RNHTLWCKYAEFEMINKFINH 111 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~----~~~w~~~a~~~~~~~~~~~A~~~~eral~~~-----p-~~~~lw~~y~~~e~~~~~~~~ 111 (476)
..|.+.|++.|...|.. ..+....+......+++++....|.+.|..- . .+...-....++-...++.+-
T Consensus 44 ~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~L 123 (440)
T KOG1464|consen 44 KEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDL 123 (440)
T ss_pred HHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHH
Confidence 57899999999988764 3466778888889999999999888887421 1 122233333344445667777
Q ss_pred HHHHHHHHHHhCC--CcHHHHH----HHHHHHHHhCCHHHHHHHHHHHHhcCCC----------H---HHHHHHHHHHHH
Q 039282 112 ARNVWDRAVAVLP--HVDQLWY----KYIRMEEIAGNVAAARLIFDRWMHWTPD----------Q---QAWLSYIKFELR 172 (476)
Q Consensus 112 A~~~~~ral~~~p--~~~~lw~----~~~~~~~~~g~~~~A~~~~eral~~~P~----------~---~~w~~~~~~~~~ 172 (476)
-...|+..+.... .+..+|+ +++.++...|.+..-..++.+.-..+.. . .++..-++++..
T Consensus 124 LQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~ 203 (440)
T KOG1464|consen 124 LQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTE 203 (440)
T ss_pred HHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhh
Confidence 7777777665432 3677887 5777777777777766666655433321 1 334444577878
Q ss_pred hhhHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 173 YEQVELARQVFERLVQCHPNV--VSSWI----KYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 173 ~g~~~~A~~~~~r~l~~~p~~--~~~w~----~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
+.+-.+-..+|++++.....- |-+.- --+....+.|.++.|..-|=.|...
T Consensus 204 qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 204 QKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 888888899999998753221 22211 1144556778888877766666654
No 305
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=91.13 E-value=0.39 Score=27.82 Aligned_cols=30 Identities=10% Similarity=0.090 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 039282 95 LWCKYAEFEMINKFINHARNVWDRAVAVLP 124 (476)
Q Consensus 95 lw~~y~~~e~~~~~~~~A~~~~~ral~~~p 124 (476)
.|..++.++...++++.|...|++++...|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 455555555556666666666666655554
No 306
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.70 E-value=3.1 Score=36.90 Aligned_cols=95 Identities=9% Similarity=0.121 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH-----
Q 039282 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ----QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI----- 198 (476)
Q Consensus 128 ~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~----- 198 (476)
..+..++.++...|+.+.|.+.|.++...+... +++...+.+....|++..+.....++-..... +.-|.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-GGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc-cchHHHHHHH
Confidence 445566666666666666666666666555443 55666666666666666666666665543222 11121
Q ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 199 --KYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 199 --~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.-|-.....+++..|-..|-.++..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCcC
Confidence 1133445567777777777766555
No 307
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.87 E-value=38 Score=37.96 Aligned_cols=132 Identities=11% Similarity=0.017 Sum_probs=88.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHH
Q 039282 65 YAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVA 144 (476)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~ 144 (476)
.|...+..+-+++|-.+|.+. + -+..+-.-++ ..-++.++|-..-+|+ +.+.+|..++..-.+.|.+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf-~---~n~~A~~VLi---e~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~ 1121 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKF-D---MNVSAIQVLI---ENIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVK 1121 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHh-c---ccHHHHHHHH---HHhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchH
Confidence 455666677777888777763 1 2233222222 2336777887777776 45899999999999999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 039282 145 AARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRA 213 (476)
Q Consensus 145 ~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A 213 (476)
+|+..|-++ -++..+..-++...+.|.++.-...+.-+.+.... +.+=..++-.+.+.+++.+.
T Consensus 1122 dAieSyika----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~AyAkt~rl~el 1185 (1666)
T KOG0985|consen 1122 DAIESYIKA----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFAYAKTNRLTEL 1185 (1666)
T ss_pred HHHHHHHhc----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHHHHHhchHHHH
Confidence 999999887 34457788888889999999888887766654332 22223333344445554443
No 308
>PRK10941 hypothetical protein; Provisional
Probab=89.86 E-value=4.5 Score=38.45 Aligned_cols=63 Identities=16% Similarity=-0.010 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 163 WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 163 w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
...+-..+.+.+++++|..+.++.+...|+++.-|..-|-++.+.|.+..|+.=++..++. +|
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~-~P 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ-CP 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh-CC
Confidence 3445556778899999999999999999999999999999999999999999999999999 99
No 309
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.76 E-value=19 Score=34.40 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhh---hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 163 WLSYIKFELRYE---QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 163 w~~~~~~~~~~g---~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
...++..+...+ ..++|..+.+-+-..+|+.+.++.....+..+.++.+.+.+++.+++..
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344444444433 3455666666666667776666655556666677777777777777776
No 310
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.58 E-value=8 Score=40.23 Aligned_cols=122 Identities=11% Similarity=0.015 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 039282 38 YDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN--HTLWCKYAEFEMINKFINHARNV 115 (476)
Q Consensus 38 ~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~--~~lw~~y~~~e~~~~~~~~A~~~ 115 (476)
.....--+...-.++..+|.+....+.-+.+...+|....|..++.+|+-..|.. ..+.+.++.++.+.|....|--+
T Consensus 192 ~r~~~~~~~~~~~glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iI 271 (886)
T KOG4507|consen 192 GRSIDDIGHLIHEGLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVI 271 (886)
T ss_pred hhhHHHHHHHHHHhhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhhe
Confidence 3344455667778888888877766666666667899999999999999766553 35678899999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 039282 116 WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 116 ~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~ 159 (476)
+..|+...|....-.+.++.++.+.+.+......|..+.+..|.
T Consensus 272 LhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~ 315 (886)
T KOG4507|consen 272 LHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPG 315 (886)
T ss_pred eehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccCcc
Confidence 99999988876666888889999999988888889999988886
No 311
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.47 E-value=2.7 Score=29.04 Aligned_cols=35 Identities=20% Similarity=0.139 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHH
Q 039282 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWC 97 (476)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~ 97 (476)
..+|..+...|++++|+...+++|.+.|+|..+-.
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 34455556667777777777777777777765543
No 312
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.09 E-value=5.7 Score=37.84 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRW 153 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~era 153 (476)
..+...+++.+...|+++.+...+++.+..+|.+..+|..+...+...|+...|+..|++.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 3445556666666666666666667666666666666666666666666666666666655
No 313
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=87.57 E-value=20 Score=32.25 Aligned_cols=53 Identities=9% Similarity=0.016 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----cHHHHHHHHHHHHHhCCHHH
Q 039282 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH----VDQLWYKYIRMEEIAGNVAA 145 (476)
Q Consensus 92 ~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~----~~~lw~~~~~~~~~~g~~~~ 145 (476)
++.+...+|.++. ..+.++|..++-++|.+.+. ++.+...++.++...|+++.
T Consensus 140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 140 TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 4555555555444 44555555555555555432 24445555555555555444
No 314
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=87.44 E-value=1.4 Score=28.49 Aligned_cols=33 Identities=24% Similarity=0.402 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHH
Q 039282 46 NDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRA 78 (476)
Q Consensus 46 ~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A 78 (476)
..|..+|..+|.+...++-||.|+..+|+..+|
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 457788888899989999999999998888654
No 315
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.40 E-value=38 Score=34.86 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 039282 127 DQLWYKYIRMEEIAGNVAAARLIFDRW 153 (476)
Q Consensus 127 ~~lw~~~~~~~~~~g~~~~A~~~~era 153 (476)
+..|..++......|+++.|...|.++
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 445555555555555555555555444
No 316
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.33 E-value=22 Score=37.59 Aligned_cols=44 Identities=14% Similarity=0.255 Sum_probs=29.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
+.+....+++++|..+-++--+. .+.++..|++|+.....+++|
T Consensus 780 VqlHve~~~W~eAFalAe~hPe~------------~~dVy~pyaqwLAE~DrFeEA 823 (1081)
T KOG1538|consen 780 VQLHVETQRWDEAFALAEKHPEF------------KDDVYMPYAQWLAENDRFEEA 823 (1081)
T ss_pred hhheeecccchHhHhhhhhCccc------------cccccchHHHHhhhhhhHHHH
Confidence 44455667777777776653333 334788899998887777776
No 317
>PF13041 PPR_2: PPR repeat family
Probab=87.13 E-value=3.3 Score=27.86 Aligned_cols=30 Identities=10% Similarity=0.228 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 194 VSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 194 ~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
..+|..+...+.+.|++++|.++|++..+.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 566777777777777777777777777765
No 318
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.07 E-value=85 Score=38.59 Aligned_cols=232 Identities=12% Similarity=0.107 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-h--cC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALE-E--DC----RNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYK 132 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~-~--~p----~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~ 132 (476)
..|..-...-....++.+-+-.+.|++. . +| .-...|+.++++....|+++.|.+..-.|.... -+.+...
T Consensus 1630 d~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E 1707 (2382)
T KOG0890|consen 1630 DNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLE 1707 (2382)
T ss_pred hhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHH
Confidence 4565544443333444444455555552 2 32 246899999999999999999999999998875 4889999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC-CC----------H-------HHHHHHHHHHHHhhh--HHHHHHHHHHHHHhCCC
Q 039282 133 YIRMEEIAGNVAAARLIFDRWMHWT-PD----------Q-------QAWLSYIKFELRYEQ--VELARQVFERLVQCHPN 192 (476)
Q Consensus 133 ~~~~~~~~g~~~~A~~~~eral~~~-P~----------~-------~~w~~~~~~~~~~g~--~~~A~~~~~r~l~~~p~ 192 (476)
.+.+....|+...|..+++..+..+ |+ . .+.+.+..+....|+ -......|..+...+|.
T Consensus 1708 ~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1708 RAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 9999999999999999999998553 22 1 234455556555555 45668899999999996
Q ss_pred CHHHHHHHHHHHH------------HcCCHHH---HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHH
Q 039282 193 VVSSWIKYAKFEM------------RRGEIDR---ARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEA 257 (476)
Q Consensus 193 ~~~~w~~~a~~~~------------~~g~~~~---A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~ 257 (476)
..+-++.+|.+|. +.|++.. +.-.|.+++.. .. .-.....+.++.-|.++-......
T Consensus 1788 we~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~y-g~---~~iyqsmPRllTLWLD~~t~~~~~---- 1859 (2382)
T KOG0890|consen 1788 WEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYY-GN---QHLYQSMPRLLTLWLDIGTHISSV---- 1859 (2382)
T ss_pred ccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHh-cc---hhHHHhhhHHHHHHHhhcchhccc----
Confidence 5555555555442 2344444 33334455543 10 000001222222222210000000
Q ss_pred HHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhcC
Q 039282 258 LRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASAL 325 (476)
Q Consensus 258 ~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~~ 325 (476)
+ .+.+-+...++...-..+.+.++...|....+..|.++-++..
T Consensus 1860 ------------------e------k~~r~ei~s~~~~~in~~i~~~~~~lp~Y~f~ta~sQLlSRic 1903 (2382)
T KOG0890|consen 1860 ------------------E------KAPRGEIVSKNLKLINSLIEEALEHLPTYQFYTAYSQLLSRIC 1903 (2382)
T ss_pred ------------------c------cCChhhhhhhhHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHc
Confidence 0 0111112233555667777888888888888889999888874
No 319
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=86.58 E-value=11 Score=34.63 Aligned_cols=86 Identities=17% Similarity=0.112 Sum_probs=54.1
Q ss_pred CCCHHHHHHHHHHHHHh----cCCC---HHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC------cHHHHH
Q 039282 72 QNEFDRARSMWELALEE----DCRN---HTLWCKYAEFEMINKF-------INHARNVWDRAVAVLPH------VDQLWY 131 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~----~p~~---~~lw~~y~~~e~~~~~-------~~~A~~~~~ral~~~p~------~~~lw~ 131 (476)
..+++.|+..|.-||-. ...+ ..++++++-++...|+ ...|...|.+++..... ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 45667777777777731 1111 4677888888777777 34555556665554322 245666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC
Q 039282 132 KYIRMEEIAGNVAAARLIFDRWMHWT 157 (476)
Q Consensus 132 ~~~~~~~~~g~~~~A~~~~eral~~~ 157 (476)
..|.+..+.|+.++|...|.+++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 77777777777777777777776543
No 320
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.43 E-value=27 Score=35.88 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=35.6
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039282 138 EIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVY 217 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~ 217 (476)
.+.|+++.|.++.... ++...|..++.....+|+++-|...|.++ .-+..+.-++...|+.+.-..+-
T Consensus 329 l~lg~L~~A~~~a~~~----~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL----DDPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HHCT-HHHHHHHCCCC----STHHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHH
T ss_pred HhcCCHHHHHHHHHhc----CcHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHH
Confidence 3445555554433221 33455666666666666665555555552 22334444455555555555555
Q ss_pred HHHHHh
Q 039282 218 ERALEK 223 (476)
Q Consensus 218 e~al~~ 223 (476)
+.|...
T Consensus 397 ~~a~~~ 402 (443)
T PF04053_consen 397 KIAEER 402 (443)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 554443
No 321
>PF13041 PPR_2: PPR repeat family
Probab=86.30 E-value=4.1 Score=27.36 Aligned_cols=43 Identities=16% Similarity=0.228 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 039282 158 PDQQAWLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSWIKYA 201 (476)
Q Consensus 158 P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~--~p~~~~~w~~~a 201 (476)
|+.-.|..++..+.+.|++++|..+|+++... .|+ ..++..++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~-~~Ty~~li 45 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPD-SYTYNILI 45 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence 34445666666666666666666666666653 233 44444443
No 322
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=86.13 E-value=9.7 Score=30.72 Aligned_cols=31 Identities=16% Similarity=0.143 Sum_probs=23.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCHHHH
Q 039282 66 AKWEGSQNEFDRARSMWELALEEDCRNHTLW 96 (476)
Q Consensus 66 a~~~~~~~~~~~A~~~~eral~~~p~~~~lw 96 (476)
|.-+...|+.-+|.++.+..+..++++...|
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~ 33 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSW 33 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchH
Confidence 4456677888888888888888887777666
No 323
>PF12854 PPR_1: PPR repeat
Probab=86.03 E-value=1.9 Score=26.55 Aligned_cols=29 Identities=17% Similarity=0.390 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 190 HPNVVSSWIKYAKFEMRRGEIDRARNVYER 219 (476)
Q Consensus 190 ~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~ 219 (476)
.|+ ..+|..++..+.+.|++++|.++|++
T Consensus 4 ~Pd-~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPD-VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCc-HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 355 67788888888888888888888775
No 324
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.29 E-value=58 Score=35.05 Aligned_cols=173 Identities=14% Similarity=0.162 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC----CHHHHHHHHHHHH-HcCCHHHHH
Q 039282 39 DYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCR----NHTLWCKYAEFEM-INKFINHAR 113 (476)
Q Consensus 39 e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~----~~~lw~~y~~~e~-~~~~~~~A~ 113 (476)
+|...|...-..+ .++.....+.+++. .|+.+++-++...+- ...+.++|+.++. ...|++.|+
T Consensus 12 ey~~~A~~~~~~~--~~~~~l~~Y~kLI~---------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae 80 (608)
T PF10345_consen 12 EYLEKAHSLATKV--KSEEQLKQYYKLIA---------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAE 80 (608)
T ss_pred HHHHHhHHHHHhc--CChhhHHHHHHHHH---------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3555555555444 45555666665554 477888888842222 2577889999876 678999999
Q ss_pred HHHHHHHHhCCCc--HHH----HHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHH-----HHhhhHHHHH
Q 039282 114 NVWDRAVAVLPHV--DQL----WYKYIRMEEIAGNVAAARLIFDRWMHWTPD--QQAWLSYIKFE-----LRYEQVELAR 180 (476)
Q Consensus 114 ~~~~ral~~~p~~--~~l----w~~~~~~~~~~g~~~~A~~~~eral~~~P~--~~~w~~~~~~~-----~~~g~~~~A~ 180 (476)
..+.+++.++.++ .++ -..++.++.+.+... |.....+.++..-. ...|....++. ...+++..|.
T Consensus 81 ~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al 159 (608)
T PF10345_consen 81 TYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAAL 159 (608)
T ss_pred HHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHH
Confidence 9999998887542 211 223455566655555 99999998876544 24454444433 2337899999
Q ss_pred HHHHHHHHhC--CCCHHHHH--HH--HHHHHHcCCHHHHHHHHHHHHHh
Q 039282 181 QVFERLVQCH--PNVVSSWI--KY--AKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 181 ~~~~r~l~~~--p~~~~~w~--~~--a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
..++...... +.++.+.. .+ +.+....+..+.+.+...+++..
T Consensus 160 ~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~ 208 (608)
T PF10345_consen 160 ENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ 208 (608)
T ss_pred HHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 9999988765 34343322 22 33445667777788888887554
No 325
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.19 E-value=23 Score=30.28 Aligned_cols=109 Identities=9% Similarity=-0.087 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA 140 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~ 140 (476)
..+..+..-...++++.+..++...--+.|+.+.+-..-+.+.+..|++..|..+|+......|..+-.--.++.+....
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al 91 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK 91 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence 34444444455778888888888777788888887777777888888888888888888776665433323333333333
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039282 141 GNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLV 187 (476)
Q Consensus 141 g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l 187 (476)
|+ ..|..++.-....|.-..++.+.+...
T Consensus 92 ~D------------------p~Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 92 GD------------------AEWHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred CC------------------hHHHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 33 357777766666666666665555544
No 326
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.06 E-value=40 Score=32.17 Aligned_cols=122 Identities=12% Similarity=0.027 Sum_probs=71.7
Q ss_pred HhCCCHHHHHHHHHHHHHhc-CCCH-------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC---CC----c-------
Q 039282 70 GSQNEFDRARSMWELALEED-CRNH-------TLWCKYAEFEMINK-FINHARNVWDRAVAVL---PH----V------- 126 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~-p~~~-------~lw~~y~~~e~~~~-~~~~A~~~~~ral~~~---p~----~------- 126 (476)
..+|+++.|...|.|+-... ..++ .+.+..|.-....+ +++.|...++++.... +. +
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35677788888887776544 3332 34445555555666 7777877777777763 11 1
Q ss_pred HHHHHHHHHHHHHhCCH---HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 039282 127 DQLWYKYIRMEEIAGNV---AAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHP 191 (476)
Q Consensus 127 ~~lw~~~~~~~~~~g~~---~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p 191 (476)
..+...++..+...+.. +.|..+.+-+-.-.|+. .+..-.+.+..+.++.+.+..++.+++...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 12344444455444443 34455555554555553 4444555555557777778888888887655
No 327
>PF12854 PPR_1: PPR repeat
Probab=83.88 E-value=2.1 Score=26.38 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 039282 157 TPDQQAWLSYIKFELRYEQVELARQVFERL 186 (476)
Q Consensus 157 ~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~ 186 (476)
.|+...|..++..+.+.|++++|..+|+++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 456666777777777777777777777653
No 328
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.84 E-value=2.9 Score=26.45 Aligned_cols=28 Identities=29% Similarity=0.236 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEE 88 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~ 88 (476)
....+|.++...|++++|..++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4556677777777777777777777653
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=83.29 E-value=9.5 Score=26.30 Aligned_cols=32 Identities=19% Similarity=-0.017 Sum_probs=18.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 039282 100 AEFEMINKFINHARNVWDRAVAVLPHVDQLWY 131 (476)
Q Consensus 100 ~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~ 131 (476)
+-...+.|++..|+...+++|+..|++.+.-.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 33455666666666666666666666555433
No 330
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.27 E-value=5.2 Score=37.99 Aligned_cols=58 Identities=21% Similarity=0.110 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 039282 95 LWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDR 152 (476)
Q Consensus 95 lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~er 152 (476)
+....+..+..+|.++.|..+.+++++++|-+...|..+...+...|+--.|.+.|++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 3344455666777777777777777777777777777777777777775555554444
No 331
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.19 E-value=5 Score=38.08 Aligned_cols=60 Identities=12% Similarity=-0.154 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral 120 (476)
....-+.++...|.+.+|.++.+|++.++|-+...|..+...+...|+--.|..-|++.-
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 444667888999999999999999999999999999999999999998666666666553
No 332
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=83.13 E-value=3.3 Score=26.18 Aligned_cols=30 Identities=27% Similarity=0.249 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 194 VSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 194 ~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
..++..++.++...|++++|..++++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788999999999999999999999886
No 333
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.00 E-value=33 Score=34.28 Aligned_cols=131 Identities=12% Similarity=0.109 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcCC---HHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQN--EFDRARSMWELALEEDCRNHTLWCKYAEFE-MINKF---INHARNV 115 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~--~~~~A~~~~eral~~~p~~~~lw~~y~~~e-~~~~~---~~~A~~~ 115 (476)
+.-....+.+|+.||.++.+|....-++.+++ ++..=..+.+++|+.||.|-..|.----+. ..... -..=..+
T Consensus 92 d~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f 171 (421)
T KOG0529|consen 92 DEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF 171 (421)
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH
Confidence 45567788999999999999999998888764 478889999999999999999886433222 22222 3445667
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHH------hCC---HH---HHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 039282 116 WDRAVAVLPHVDQLWYKYIRMEEI------AGN---VA---AARLIFDRWMHWTPDQ-QAWLSYIKFELR 172 (476)
Q Consensus 116 ~~ral~~~p~~~~lw~~~~~~~~~------~g~---~~---~A~~~~eral~~~P~~-~~w~~~~~~~~~ 172 (476)
..+++..++.+-..|..-..+... .|+ .. .-...-..++-.+|++ ..|..+.-++.+
T Consensus 172 tt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~rWLl~~ 241 (421)
T KOG0529|consen 172 TTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYHRWLLGR 241 (421)
T ss_pred HHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeehHHhhcc
Confidence 888888889888999877766653 232 11 2223344566677876 677765554444
No 334
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=82.98 E-value=4.6 Score=25.35 Aligned_cols=33 Identities=15% Similarity=0.064 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHH--HHHHHHhcCCC
Q 039282 60 AVWINYAKWEGSQNEFDRARSM--WELALEEDCRN 92 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~--~eral~~~p~~ 92 (476)
+.|..+|-..-.+|++++|+.+ |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4677777777777888888887 33665666543
No 335
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.17 E-value=33 Score=29.76 Aligned_cols=65 Identities=11% Similarity=0.015 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 96 w~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
.+....+-...++...+..+++..--+-|+.+.+-..-+.++...|++.+|+.+|+......|..
T Consensus 13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~ 77 (160)
T PF09613_consen 13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF 77 (160)
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC
Confidence 34444455667899999999999999999999999999999999999999999999988777764
No 336
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=81.18 E-value=27 Score=28.18 Aligned_cols=103 Identities=17% Similarity=0.171 Sum_probs=61.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH-HHhc-CCCHHHHHHHHHHHHHhhhHH
Q 039282 100 AEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDR-WMHW-TPDQQAWLSYIKFELRYEQVE 177 (476)
Q Consensus 100 ~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~er-al~~-~P~~~~w~~~~~~~~~~g~~~ 177 (476)
+.-....||.-+|..+.+..+...+++...|.. ...+|. +|.+ +-.. +|+ +-..| .-
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~l----h~~QG~------if~~lA~~ten~d--~k~~y---------Ll 61 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLL----HRLQGT------IFYKLAKKTENPD--VKFRY---------LL 61 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHH----HHHHhH------HHHHHHHhccCch--HHHHH---------HH
Confidence 344567788888888888888888877766621 112221 1211 1111 222 21222 23
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 178 LARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 178 ~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.+.+.|.+++...|..+..++.+|.-+.....+.++..--++++..
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 4567788888888887777777776665555666777766666665
No 337
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=80.57 E-value=82 Score=33.29 Aligned_cols=130 Identities=9% Similarity=0.099 Sum_probs=69.8
Q ss_pred HhCCCCH-----HHHHHHHHHHHh------------CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHH
Q 039282 53 RRVPGDT-----AVWINYAKWEGS------------QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK--FINHAR 113 (476)
Q Consensus 53 ~~~p~~~-----~~w~~~a~~~~~------------~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~--~~~~A~ 113 (476)
...|.++ ..|....+++.. .|+.++|....++...-.+.-.++-+.-. +....+ +...-.
T Consensus 286 ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~~lpi~~~~~-lle~~d~~~~~~l~ 364 (547)
T PF14929_consen 286 EKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTCALPIRLRAH-LLEYFDQNNSSVLS 364 (547)
T ss_pred ccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCccchHHHHHH-HHHHhCcccHHHHH
Confidence 4555555 566655555532 26677777777664432222223322222 222222 566677
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH---HHhcCCCHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Q 039282 114 NVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDR---WMHWTPDQQAWLSYIKFELR-YEQVELARQVFERL 186 (476)
Q Consensus 114 ~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~er---al~~~P~~~~w~~~~~~~~~-~g~~~~A~~~~~r~ 186 (476)
.+|++++...|.+.......+.+... ...+.++++- -+...|...+|..|+....+ .++++.-.+....+
T Consensus 365 ~~~e~~~~~~P~~~~~le~l~~~~~~---~~~~~~Lle~i~~~l~~~~s~~iwle~~~~~l~~~~~~~~~~e~~~~~ 438 (547)
T PF14929_consen 365 SCLEDCLKKDPTMSYSLERLILLHQK---DYSAEQLLEMIALHLDLVPSHPIWLEFVSCFLKNPSRFEDKEEDHKSA 438 (547)
T ss_pred HHHHHHhcCCCcHHHHHHHHHhhhhh---HHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHhccccccccHHHHHHH
Confidence 78888888888766665555555444 3334444442 23445777788888877666 44444333334443
No 338
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=80.31 E-value=27 Score=29.33 Aligned_cols=74 Identities=12% Similarity=-0.054 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHhC---CCHHHHHHHHHHHHH-hcCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 039282 58 DTAVWINYAKWEGSQ---NEFDRARSMWELALE-EDCRNHTLWCKYAE-FEMINKFINHARNVWDRAVAVLPHVDQLWY 131 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~---~~~~~A~~~~eral~-~~p~~~~lw~~y~~-~e~~~~~~~~A~~~~~ral~~~p~~~~lw~ 131 (476)
....-+.||-.+... .|..+.+.+++..+. -+|..-.-.+-|.. -..+.|+++.++.+.+..+...|++.+.-.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 345566677666653 456678888888885 55554433333333 467788999999999999999888766543
No 339
>PF14929 TAF1_subA: TAF RNA Polymerase I subunit A
Probab=79.22 E-value=90 Score=32.98 Aligned_cols=146 Identities=11% Similarity=0.058 Sum_probs=92.1
Q ss_pred CCHHHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHc------------CCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 039282 73 NEFDRARSMWELALEEDCRNH-----TLWCKYAEFEMIN------------KFINHARNVWDRAVAVLPHVDQLWYKYIR 135 (476)
Q Consensus 73 ~~~~~A~~~~eral~~~p~~~-----~lw~~y~~~e~~~------------~~~~~A~~~~~ral~~~p~~~~lw~~~~~ 135 (476)
++-+.++.+....-...|.++ .+|.....++... ++.+.|....++...-.+. .......+.
T Consensus 272 ~~qee~~~~~s~~~ek~~s~p~~~~fn~yk~a~KYLR~al~s~p~vlLl~~~~l~eal~~~e~~c~~~~~-~lpi~~~~~ 350 (547)
T PF14929_consen 272 QPQEEYRESLSNYAEKFPSNPGRSIFNAYKYAVKYLRLALQSNPPVLLLIGGRLKEALNELEKFCISSTC-ALPIRLRAH 350 (547)
T ss_pred CcHHHHHHHHhhccccccCccccchhHHHHHHHHHHHHHhcCCCCeEEeccccHHHHHHHHHHhccCCCc-cchHHHHHH
Confidence 555666666644446666676 8888777777432 6678888877775543332 333444555
Q ss_pred HHHHhC--CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHH-cCC
Q 039282 136 MEEIAG--NVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFE---RLVQCHPNVVSSWIKYAKFEMR-RGE 209 (476)
Q Consensus 136 ~~~~~g--~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~---r~l~~~p~~~~~w~~~a~~~~~-~g~ 209 (476)
+.+..+ +......+|+++++.+|....-........+. ...+.++++ -.+...|. .++|..++....+ .++
T Consensus 351 lle~~d~~~~~~l~~~~e~~~~~~P~~~~~le~l~~~~~~--~~~~~~Lle~i~~~l~~~~s-~~iwle~~~~~l~~~~~ 427 (547)
T PF14929_consen 351 LLEYFDQNNSSVLSSCLEDCLKKDPTMSYSLERLILLHQK--DYSAEQLLEMIALHLDLVPS-HPIWLEFVSCFLKNPSR 427 (547)
T ss_pred HHHHhCcccHHHHHHHHHHHhcCCCcHHHHHHHHHhhhhh--HHHHHHHHHHHHHHhhcCCC-chHHHHHHHHHHhcccc
Confidence 555655 67788899999999999964322222222222 344555555 33455677 8899999999888 566
Q ss_pred HHHHHHHHHHHHH
Q 039282 210 IDRARNVYERALE 222 (476)
Q Consensus 210 ~~~A~~~~e~al~ 222 (476)
++.-.+-...++.
T Consensus 428 ~~~~~e~~~~~l~ 440 (547)
T PF14929_consen 428 FEDKEEDHKSALK 440 (547)
T ss_pred ccccHHHHHHHHh
Confidence 6655555555553
No 340
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=78.91 E-value=37 Score=28.33 Aligned_cols=122 Identities=16% Similarity=0.042 Sum_probs=62.9
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHH
Q 039282 67 KWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAA 146 (476)
Q Consensus 67 ~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A 146 (476)
..+...+........++.++..++.++.+...++.++.+.+ .......+..- ...-+ ....+.++...+-++.+
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~--~~~yd---~~~~~~~c~~~~l~~~~ 88 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNK--SNHYD---IEKVGKLCEKAKLYEEA 88 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhc--cccCC---HHHHHHHHHHcCcHHHH
Confidence 33344566777888888888777777778888888776543 23333333310 00001 11233333344444444
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039282 147 RLIFDRWMHWTPDQQAWLSYIKFELRY-EQVELARQVFERLVQCHPNVVSSWIKYAKFEMR 206 (476)
Q Consensus 147 ~~~~eral~~~P~~~~w~~~~~~~~~~-g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~ 206 (476)
.-++.+.- .+..-+...... ++++.|.+.+.+ +++++.|...+.++..
T Consensus 89 ~~l~~k~~-------~~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 89 VELYKKDG-------NFKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALLD 137 (140)
T ss_pred HHHHHhhc-------CHHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHHc
Confidence 44444330 112222222222 556666666554 3457788888776653
No 341
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=78.76 E-value=29 Score=36.37 Aligned_cols=116 Identities=13% Similarity=0.017 Sum_probs=83.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHH--HHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 039282 45 RNDFEDSIRRVPGDTAVWINY--AKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHA-RNVWDRAVA 121 (476)
Q Consensus 45 ~~~~e~~l~~~p~~~~~w~~~--a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A-~~~~~ral~ 121 (476)
...+-..+..+|.+.+..+.. .-.+...++...+.-.+..++.++|.+......++......|..-.+ ...-+.+..
T Consensus 51 ~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 51 IYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred HHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334444555678888876555 44555568888888899999999999999999888876666655544 445555888
Q ss_pred hCCCcHHHHHHH------HHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 122 VLPHVDQLWYKY------IRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 122 ~~p~~~~lw~~~------~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
..|++..+.... +.+...+|+...+....+++....|..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 131 LSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred cCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 888866554444 666677788888888888888888875
No 342
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=78.24 E-value=70 Score=31.18 Aligned_cols=130 Identities=10% Similarity=0.025 Sum_probs=64.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 039282 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLP 124 (476)
Q Consensus 45 ~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p 124 (476)
.+.-..+|..||....+++.+|.-+. -.+.+|.++|.+||+.--.+. .+..+..+--...+.....+-
T Consensus 204 I~~A~~ALeIN~eCA~AyvLLAEEEa--~Ti~~AE~l~k~ALka~e~~y----------r~sqq~qh~~~~~da~~rRDt 271 (556)
T KOG3807|consen 204 IKAAYQALEINNECATAYVLLAEEEA--TTIVDAERLFKQALKAGETIY----------RQSQQCQHQSPQHEAQLRRDT 271 (556)
T ss_pred HHHHHHHHhcCchhhhHHHhhhhhhh--hhHHHHHHHHHHHHHHHHHHH----------hhHHHHhhhccchhhhhhccc
Confidence 34444666777777777666665443 245667777777765321110 011111111111111111111
Q ss_pred CcHHHHH--HHHHHHHHhCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 039282 125 HVDQLWY--KYIRMEEIAGNVAAARLIFDRWMHWTPDQ---QAWLSYIKFELRYEQVELARQVFERLV 187 (476)
Q Consensus 125 ~~~~lw~--~~~~~~~~~g~~~~A~~~~eral~~~P~~---~~w~~~~~~~~~~g~~~~A~~~~~r~l 187 (476)
+..++. .++.+..++|...+|.+.|...++-.|-. ++..+++..+....-+..+..++-++-
T Consensus 272 -nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 272 -NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred -chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 122222 34445566777777777777777766643 344555555555555555555554443
No 343
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.17 E-value=1.2e+02 Score=33.69 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=19.2
Q ss_pred hhHHHHHHcCCHHHHHHHHHHHHhc
Q 039282 283 AYIHFEKSQGERERRRALYERLVER 307 (476)
Q Consensus 283 ~~~~~~~~~g~~e~Ar~l~e~~l~~ 307 (476)
.++.++...|+.++|......+...
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3456777899999998888776554
No 344
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=78.16 E-value=90 Score=32.38 Aligned_cols=98 Identities=15% Similarity=0.098 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039282 126 VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEM 205 (476)
Q Consensus 126 ~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~ 205 (476)
++......+.+........-+..++.+++....+-..+...++.+.+. ..++--.+++|.+..+-+++..-..++..|.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yE 143 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYE 143 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 344444555555555556677788888888877777788888888777 5677888999999988888888888888887
Q ss_pred HcCCHHHHHHHHHHHHHhhcC
Q 039282 206 RRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 206 ~~g~~~~A~~~~e~al~~~~p 226 (476)
+ ++...+...|.+++.. +-
T Consensus 144 k-ik~sk~a~~f~Ka~yr-fI 162 (711)
T COG1747 144 K-IKKSKAAEFFGKALYR-FI 162 (711)
T ss_pred H-hchhhHHHHHHHHHHH-hc
Confidence 7 8889999999999987 54
No 345
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=77.88 E-value=31 Score=31.60 Aligned_cols=84 Identities=11% Similarity=0.087 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHHhC-----CC--cHHHHHHHHHHHHHhCCHH-------HHHHHHHHHHhcCCC-----H--HHHH
Q 039282 106 NKFINHARNVWDRAVAVL-----PH--VDQLWYKYIRMEEIAGNVA-------AARLIFDRWMHWTPD-----Q--QAWL 164 (476)
Q Consensus 106 ~~~~~~A~~~~~ral~~~-----p~--~~~lw~~~~~~~~~~g~~~-------~A~~~~eral~~~P~-----~--~~w~ 164 (476)
..+++.|...|.-|+-.. +. ...++..++.++...|+.+ .|...|++++..... + .+..
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 456777777777766431 11 2567888888888888744 344555555443322 1 3344
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 039282 165 SYIKFELRYEQVELARQVFERLVQC 189 (476)
Q Consensus 165 ~~~~~~~~~g~~~~A~~~~~r~l~~ 189 (476)
-.+.+..+.|++++|...|.+.+..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 4455566666677777666666654
No 346
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=77.04 E-value=12 Score=38.48 Aligned_cols=88 Identities=14% Similarity=-0.066 Sum_probs=69.7
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 039282 74 EFDRARSMWELALEEDCRNHTLWCKYAEFEMIN---KFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIF 150 (476)
Q Consensus 74 ~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~---~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~ 150 (476)
....|+..|.+++...|....++..++.++++. |+.-.|..-...|+.++|...+.|+.++.+...++.+.+|....
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 456788889999988898888888888888775 45566777777788888888888888888888888888888877
Q ss_pred HHHHhcCCCHH
Q 039282 151 DRWMHWTPDQQ 161 (476)
Q Consensus 151 eral~~~P~~~ 161 (476)
.-+....|.+.
T Consensus 469 ~alq~~~Ptd~ 479 (758)
T KOG1310|consen 469 WALQMSFPTDV 479 (758)
T ss_pred HHHhhcCchhh
Confidence 77766667543
No 347
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=76.63 E-value=78 Score=30.87 Aligned_cols=108 Identities=13% Similarity=0.059 Sum_probs=65.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 039282 72 QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFD 151 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~e 151 (476)
..+...-++.-..||+++|....+++.+++-+ ...+.+|.++|.+|++.... .+.-.+-....|... +
T Consensus 197 ERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~----~yr~sqq~qh~~~~~------d 264 (556)
T KOG3807|consen 197 ERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET----IYRQSQQCQHQSPQH------E 264 (556)
T ss_pred hcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH----HHhhHHHHhhhccch------h
Confidence 34455556667778999999999998887644 45688999999999986322 222111111112111 1
Q ss_pred HHHhcCCCH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Q 039282 152 RWMHWTPDQ--QAWLSYIKFELRYEQVELARQVFERLVQCHP 191 (476)
Q Consensus 152 ral~~~P~~--~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p 191 (476)
-..+.+.+. .+-..++....+.|...+|...|+...+..|
T Consensus 265 a~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 265 AQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 111122221 2233444555678999999999988887776
No 348
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=76.52 E-value=31 Score=33.44 Aligned_cols=100 Identities=10% Similarity=0.110 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHH------HHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVAV----LPHVDQLW------YKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA 162 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~~----~p~~~~lw------~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~ 162 (476)
..+|...++++.+-|+.+.|...+.+.... .-.-+-+. +-|+....-..+++.|-.++++.-.|+-.+..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 478999999999999988887766555443 22212111 12222223345678888999998888888777
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 163 WLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 163 w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
-...+-+.....++..|-.+|-..+..+.+
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 677777777888899999999888876654
No 349
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.42 E-value=94 Score=31.73 Aligned_cols=87 Identities=11% Similarity=0.019 Sum_probs=43.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 039282 136 MEEIAGNVAAARLIFDRWMHWTPDQ------QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209 (476)
Q Consensus 136 ~~~~~g~~~~A~~~~eral~~~P~~------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~ 209 (476)
+...++++..|..+|.|......+. .+....+--..-.++++......-..-+..|.++-.-+-.+-...+.|.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKE 94 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhh
Confidence 3445566666666666655433221 2222222222333445554444444445566544333333444556677
Q ss_pred HHHHHHHHHHHHH
Q 039282 210 IDRARNVYERALE 222 (476)
Q Consensus 210 ~~~A~~~~e~al~ 222 (476)
+..|...+..--+
T Consensus 95 ~~kal~~ls~w~~ 107 (549)
T PF07079_consen 95 YRKALQALSVWKE 107 (549)
T ss_pred HHHHHHHHHHHHh
Confidence 7777776665443
No 350
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=75.40 E-value=1.4e+02 Score=33.14 Aligned_cols=194 Identities=14% Similarity=0.077 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----cHHHHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRN-HTLWCKYAEFEMINKFINHARNVWDRAVAVLPH-----VDQLWYK 132 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~-~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~-----~~~lw~~ 132 (476)
.+....-+.|...+|...+|+...=+| -+|.- ..+..+++.-....++ ..+..++++..|. ++.+-..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~----lsll~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSE----LSLLLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccc----hHHHHHHHHhCCHHHHhhCchHHHH
Confidence 567777777888888888777653332 22221 1222233222333344 3456666666674 5788888
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCH---------HHHHHHH-HHHHHhhhHHHHHHHHHHHHHhCCCC-----HHHH
Q 039282 133 YIRMEEIAGNVAAARLIFDRWMHWTPDQ---------QAWLSYI-KFELRYEQVELARQVFERLVQCHPNV-----VSSW 197 (476)
Q Consensus 133 ~~~~~~~~g~~~~A~~~~eral~~~P~~---------~~w~~~~-~~~~~~g~~~~A~~~~~r~l~~~p~~-----~~~w 197 (476)
++........+++|..+..++-..-|.. ..|..+- .+....|+++.|..+.+.++..-|.. ....
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 8888888999999999998887665541 2244433 44567799999999999999987752 3455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH--HHHHHHccchhHHHHHHHhC
Q 039282 198 IKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAF--AEFEERYKESESEALRKEFG 263 (476)
Q Consensus 198 ~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~--a~~e~~~~~~e~A~~ek~~g 263 (476)
...+....-.|++++|+.+...+.+. ... -+...-.+|..+ +.+++.+|+..++.-++.++
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~-a~~----~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~ 563 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQM-ARQ----HDVYHLALWSLLQQSEILEAQGQVARAEQEKAFN 563 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHH-HHH----cccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66677777889999999999888765 210 001122344444 45677788666664444333
No 351
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=74.68 E-value=16 Score=36.51 Aligned_cols=44 Identities=16% Similarity=0.014 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 76 DRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRA 119 (476)
Q Consensus 76 ~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ra 119 (476)
-+|..++|.++..+|.|..+-+.++.++...|-...|...|...
T Consensus 200 ~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 200 LQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 45677777777777777777777777777777777777766543
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.01 E-value=6.2 Score=26.06 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHH
Q 039282 63 INYAKWEGSQNEFDRARSMWELALE 87 (476)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~eral~ 87 (476)
+.+|..|+..|+.+.||.+++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4678888888888888888888874
No 353
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.40 E-value=68 Score=34.12 Aligned_cols=96 Identities=8% Similarity=0.059 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 039282 127 DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-------QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK 199 (476)
Q Consensus 127 ~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~ 199 (476)
.-+|........ ..++..+.+.|...+...|.+ .+...+...+....+.|+|.++++.+-+.+|.++-.-..
T Consensus 355 ~iLWn~A~~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 355 TLLWNTAKKLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHhhHHHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 456766665543 468999999999999988875 345566677788899999999999999999986655555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 200 YAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 200 ~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
........|.-++|..+.......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 555566678888898888877666
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.12 E-value=1.5e+02 Score=32.43 Aligned_cols=29 Identities=14% Similarity=0.190 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 195 SSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 195 ~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.+.-.++.+|...|++..|..+|-.+.+.
T Consensus 506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~ 534 (846)
T KOG2066|consen 506 ALLEVLAHLYLYDNKYEKALPIYLKLQDK 534 (846)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHhccCh
Confidence 33444788888889999998888876554
No 355
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.11 E-value=1.3e+02 Score=31.90 Aligned_cols=174 Identities=12% Similarity=0.004 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHh-----cCCCHHHHHHHHHHHHHcC-----
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGS-----QNEFDRARSMWELALEE-----DCRNHTLWCKYAEFEMINK----- 107 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~-----~~~~~~A~~~~eral~~-----~p~~~~lw~~y~~~e~~~~----- 107 (476)
.+...|+.+... .+...-..++.++.. ..|++.|...|+.+... .-.++.....++.++....
T Consensus 230 ~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~ 307 (552)
T KOG1550|consen 230 EAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI 307 (552)
T ss_pred HHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc
Confidence 455666665543 456666666666654 36899999999999761 1124556677777777643
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hhhHHHHH
Q 039282 108 FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA---GNVAAARLIFDRWMHWTPDQQAWLSYIKFELR----YEQVELAR 180 (476)
Q Consensus 108 ~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~---g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~----~g~~~~A~ 180 (476)
+...|..+|.++..... +..-+.++.++... .|...|...|..+....-. .+...++.++.. .-+...|.
T Consensus 308 d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 308 DYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred cHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHH
Confidence 67889999999988744 44555566655443 3678899999998765433 233333333322 23789999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHh
Q 039282 181 QVFERLVQCHPNVVSSWIKYAKFE-MRRGEIDRARNVYERALEK 223 (476)
Q Consensus 181 ~~~~r~l~~~p~~~~~w~~~a~~~-~~~g~~~~A~~~~e~al~~ 223 (476)
.+|.++....+ +.+...++.++ ...+..+.+...+..+...
T Consensus 385 ~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 385 AYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHHccC--hhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 99999998873 44333333333 3336676666666555443
No 356
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=72.84 E-value=19 Score=34.06 Aligned_cols=57 Identities=11% Similarity=-0.101 Sum_probs=35.4
Q ss_pred hCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 039282 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD 127 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~ 127 (476)
..++++.|..+-++.+..+|.++.-|.--|-++...|...-|++-+...+..+|+.+
T Consensus 193 ~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 193 RELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 345566666666666666666666666666666666666666666666666666543
No 357
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=72.23 E-value=6 Score=22.97 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 196 SWIKYAKFEMRRGEIDRARNVYERALE 222 (476)
Q Consensus 196 ~w~~~a~~~~~~g~~~~A~~~~e~al~ 222 (476)
+|..+...+.+.|++++|..+|++..+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhH
Confidence 355556666666666666666666544
No 358
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=72.09 E-value=18 Score=36.13 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 039282 109 INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRW 153 (476)
Q Consensus 109 ~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~era 153 (476)
+-.|..+++.++...|.+..+-..++.++..+|-.+.|...|...
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 567889999999999999999999999999999999999999754
No 359
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=72.04 E-value=26 Score=27.19 Aligned_cols=53 Identities=19% Similarity=0.247 Sum_probs=37.4
Q ss_pred HHhhhHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 171 LRYEQVELARQVFERLVQCHPN---------VVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 171 ~~~g~~~~A~~~~~r~l~~~p~---------~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.+.|++..|...+.++...... ...+++.++.+....|+.++|...+++||+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456666665555555543321 1345677888889999999999999999987
No 360
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=71.85 E-value=11 Score=24.55 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=24.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 039282 182 VFERLVQCHPNVVSSWIKYAKFEMRRGEIDRA 213 (476)
Q Consensus 182 ~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A 213 (476)
-|.+++..+|++...++-|+.++..+|+..+|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 46677777888888888888888888887554
No 361
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.73 E-value=1.3e+02 Score=31.10 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHHHHHhc------CCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC-------cH
Q 039282 72 QNEFDRARSMWELALEED------CRNH--------TLWCKYAEFEMINKFINHARNVWDRAVAVL---PH-------VD 127 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~------p~~~--------~lw~~y~~~e~~~~~~~~A~~~~~ral~~~---p~-------~~ 127 (476)
.|-+++|.++-++++..- +... .+.-..+.+.+..|++..|..-...+...+ |. .+
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~ 367 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEA 367 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHH
Confidence 355667777777766431 1111 222233344556789888877766665543 43 35
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHH----HHHHHHHHHhhhHHHHHHHHHHHHHhCCC-------CHHH
Q 039282 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAW----LSYIKFELRYEQVELARQVFERLVQCHPN-------VVSS 196 (476)
Q Consensus 128 ~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w----~~~~~~~~~~g~~~~A~~~~~r~l~~~p~-------~~~~ 196 (476)
.+.+.+|.+....+-++.|..-|..+++.....++| ..++..+.+.|+.+.-.++.+..--.+.. ...+
T Consensus 368 ~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~ 447 (629)
T KOG2300|consen 368 QIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASI 447 (629)
T ss_pred HHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHH
Confidence 677888888888899999999999999887666554 34555666767655555554443221111 1356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 197 WIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 197 w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
++-+|-+...++++.+|+....+.++.
T Consensus 448 ~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 448 LYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 777888889999999999999999986
No 362
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=71.40 E-value=6.5 Score=22.82 Aligned_cols=26 Identities=27% Similarity=0.273 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039282 163 WLSYIKFELRYEQVELARQVFERLVQ 188 (476)
Q Consensus 163 w~~~~~~~~~~g~~~~A~~~~~r~l~ 188 (476)
|..++..+.+.|++++|..+|+++.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 55566666666666666666666543
No 363
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=71.20 E-value=19 Score=28.01 Aligned_cols=54 Identities=9% Similarity=0.036 Sum_probs=34.7
Q ss_pred HhCCCHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 039282 70 GSQNEFDRARSMWELALEEDCRN---------HTLWCKYAEFEMINKFINHARNVWDRAVAVL 123 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~~---------~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~ 123 (476)
+..||+..|...+.+.++..... ...++.++.+....|+.+.|...++.++.+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 45688888877777777542221 2345556666667777777777777777653
No 364
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=71.13 E-value=5.7 Score=22.62 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=14.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHH
Q 039282 62 WINYAKWEGSQNEFDRARSMWE 83 (476)
Q Consensus 62 w~~~a~~~~~~~~~~~A~~~~e 83 (476)
.+.+|..+...|++++|+.+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456666666677766666655
No 365
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=70.01 E-value=1.7e+02 Score=31.73 Aligned_cols=120 Identities=16% Similarity=0.079 Sum_probs=76.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHH---------HHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Q 039282 92 NHTLWCKYAEFEMINKFINHARNV---------WDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA 162 (476)
Q Consensus 92 ~~~lw~~y~~~e~~~~~~~~A~~~---------~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~ 162 (476)
+..-|...++.+...|+.+.-... ++.+....|.+..+.-.++.+..+.|--++|...|-|.- .|.
T Consensus 808 ~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s--~pk--- 882 (1189)
T KOG2041|consen 808 EMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS--LPK--- 882 (1189)
T ss_pred HHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc--CcH---
Confidence 345566666666666554432222 344455678888999999999999999998888876542 122
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 163 WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220 (476)
Q Consensus 163 w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~a 220 (476)
.-+..+...+++.+|.++-++.- -|.-..+..+++.-+...++.-+|.+.+.++
T Consensus 883 --aAv~tCv~LnQW~~avelaq~~~--l~qv~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 883 --AAVHTCVELNQWGEAVELAQRFQ--LPQVQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 22344555666777777766642 3553444555666666667777777777766
No 366
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.17 E-value=20 Score=32.03 Aligned_cols=50 Identities=24% Similarity=0.259 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 175 ~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
..+......++.+...|+ +.++.+++..+...|+.++|+....++... +|
T Consensus 126 ~l~~~~~~a~~~l~~~P~-~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l-yP 175 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPD-PNVYQRYALALALLGDPEEARQWLARARRL-YP 175 (193)
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 345556777777888887 888888888888888888888888888887 77
No 367
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=68.72 E-value=8.2 Score=21.96 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q 039282 196 SWIKYAKFEMRRGEIDRARNVYE 218 (476)
Q Consensus 196 ~w~~~a~~~~~~g~~~~A~~~~e 218 (476)
+.+.++..+...|+.++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45566777777777777777665
No 368
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=68.39 E-value=21 Score=36.80 Aligned_cols=84 Identities=13% Similarity=-0.059 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQ---NEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDR 118 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~---~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~r 118 (476)
..+...|.+++...|.....+..+|..++.. |+.-.|..-.-.|+.++|....+|..++.++...+.+..|......
T Consensus 391 ~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 391 SGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred HHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 4678889999999999999999999998874 6777888888899999999999999999999999999999998888
Q ss_pred HHHhCCC
Q 039282 119 AVAVLPH 125 (476)
Q Consensus 119 al~~~p~ 125 (476)
+....|.
T Consensus 471 lq~~~Pt 477 (758)
T KOG1310|consen 471 LQMSFPT 477 (758)
T ss_pred HhhcCch
Confidence 8877884
No 369
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.37 E-value=1.7e+02 Score=31.13 Aligned_cols=156 Identities=17% Similarity=0.082 Sum_probs=85.8
Q ss_pred HhhHHH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 039282 36 ELYDYR-LHKRNDFEDSIRRVPGD-TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHAR 113 (476)
Q Consensus 36 el~e~~-~~a~~~~e~~l~~~p~~-~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~ 113 (476)
++.+|| .-.|..|+.+-..-|.= -+...+.+.++..+|-. +.||.+.++...- -++.++.|+.+.|.
T Consensus 589 ~vleyqt~vmrrd~~~a~~vLp~I~k~~rt~va~Fle~~g~~-------e~AL~~s~D~d~r----Felal~lgrl~iA~ 657 (794)
T KOG0276|consen 589 EVLEYQTLVLRRDLEVADGVLPTIPKEIRTKVAHFLESQGMK-------EQALELSTDPDQR----FELALKLGRLDIAF 657 (794)
T ss_pred HHHHHHHHhhhccccccccccccCchhhhhhHHhHhhhccch-------HhhhhcCCChhhh----hhhhhhcCcHHHHH
Confidence 344555 22334555554433321 34566777777776644 4556655543321 23445667888777
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Q 039282 114 NVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNV 193 (476)
Q Consensus 114 ~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~ 193 (476)
.+...+ ++..=|..++.+....+++..|.++|.++..+ ..+..++...|+-+-...+-..+-....++
T Consensus 658 ~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~-------~~LlLl~t~~g~~~~l~~la~~~~~~g~~N 725 (794)
T KOG0276|consen 658 DLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRARDL-------GSLLLLYTSSGNAEGLAVLASLAKKQGKNN 725 (794)
T ss_pred HHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhcch-------hhhhhhhhhcCChhHHHHHHHHHHhhcccc
Confidence 765544 46777999999999999999999999888543 333334444444332222222222222221
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 194 VSSWIKYAKFEMRRGEIDRARNVYER 219 (476)
Q Consensus 194 ~~~w~~~a~~~~~~g~~~~A~~~~e~ 219 (476)
... ..+...|+++.+.+++..
T Consensus 726 ~AF-----~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 LAF-----LAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHH-----HHHHHcCCHHHHHHHHHh
Confidence 211 123455777777666654
No 370
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=67.27 E-value=1e+02 Score=35.55 Aligned_cols=145 Identities=17% Similarity=0.173 Sum_probs=93.6
Q ss_pred HHHHHHH-HHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH-------HHhcCCCH--HHHHHHHHHHHHhhhHHHHH
Q 039282 111 HARNVWD-RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDR-------WMHWTPDQ--QAWLSYIKFELRYEQVELAR 180 (476)
Q Consensus 111 ~A~~~~~-ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~er-------al~~~P~~--~~w~~~~~~~~~~g~~~~A~ 180 (476)
++.+++. ..-...|.....+..++.++...|+.+.|...-.+ .+..++.+ ......+.++...++...|.
T Consensus 956 ~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al 1035 (1236)
T KOG1839|consen 956 ESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGAL 1035 (1236)
T ss_pred hhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchh
Confidence 3334666 33445677788888889999999999888876544 44444443 33555556667777777887
Q ss_pred HHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccc
Q 039282 181 QVFERLVQC--------HPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE 252 (476)
Q Consensus 181 ~~~~r~l~~--------~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~ 252 (476)
..+.++... +|.-..+...+..++...++++.|....+.|+.. ...-..+..-.....+...++.....++
T Consensus 1036 ~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~-~~~v~g~~~l~~~~~~~~~a~l~~s~~d 1114 (1236)
T KOG1839|consen 1036 KSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAK-NKKVLGPKELETALSYHALARLFESMKD 1114 (1236)
T ss_pred hhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH-HhhhcCccchhhhhHHHHHHHHHhhhHH
Confidence 777777652 5554455566677777778999999999999876 2100000112334455666776666666
Q ss_pred hhHH
Q 039282 253 SESE 256 (476)
Q Consensus 253 ~e~A 256 (476)
+..|
T Consensus 1115 fr~a 1118 (1236)
T KOG1839|consen 1115 FRNA 1118 (1236)
T ss_pred HHHH
Confidence 6665
No 371
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.22 E-value=38 Score=36.83 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=84.4
Q ss_pred HhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 039282 87 EEDCRNHTLWCKYAEFEMIN--------KFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP 158 (476)
Q Consensus 87 ~~~p~~~~lw~~y~~~e~~~--------~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P 158 (476)
...+.+..+|..|.++.+.. ++....+ .++..+...|++...|-.|+.++..+..-..-+-+=.+...-.-
T Consensus 716 k~s~~~~~~y~~ycqiq~~~~~~S~l~f~~~~k~r-F~e~~v~~fsrn~~~~e~wa~l~s~l~qk~r~rl~~~k~~~~~~ 794 (913)
T KOG1972|consen 716 KLSLTEQSLYRSYCQIQIKHFWASNLAFYNLPKVR-FFEEGVTLFSRNAFGWELWAELESELRQKIRKRLSSTKNEVDGR 794 (913)
T ss_pred ccCchhHHHHHHHHHHHHHHHHhhhhhccccccee-eeccchhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhhcch
Confidence 34556677888887554332 3344444 56666888999999999998887654321111100000000000
Q ss_pred CHHHHHHHHHHHHHhhhHHHHH-HHHHHHH-----HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCC
Q 039282 159 DQQAWLSYIKFELRYEQVELAR-QVFERLV-----QCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDD 232 (476)
Q Consensus 159 ~~~~w~~~~~~~~~~g~~~~A~-~~~~r~l-----~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~ 232 (476)
...+|......+.....+..|. ..|..+. ...|.++..|..|..++...++.+....++.+|+.. ||
T Consensus 795 n~ai~~~~~i~e~~~~~i~~a~t~mf~n~~~si~d~~l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~s-Cp------ 867 (913)
T KOG1972|consen 795 NAAIHAEQVIPETGDDQIMSANTGMFRNADRSILDEELPDENSKWRDYLEALSKLLNKERSKAASTKALDS-CP------ 867 (913)
T ss_pred hhhhccccccccchHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhc-Cc------
Confidence 0112222222221111111111 1121111 135667889999999999999999999999999999 98
Q ss_pred hhhHHHHHHHHHHHHH
Q 039282 233 DEGAEQLFVAFAEFEE 248 (476)
Q Consensus 233 ~~~~~~l~~~~a~~e~ 248 (476)
-...+...++...-
T Consensus 868 --W~K~l~md~ie~l~ 881 (913)
T KOG1972|consen 868 --WAKWLEMDVIEDLP 881 (913)
T ss_pred --hHHHHHHHHHHhcc
Confidence 55556666665443
No 372
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=66.12 E-value=1.7e+02 Score=30.44 Aligned_cols=167 Identities=11% Similarity=0.045 Sum_probs=115.2
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 039282 52 IRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWY 131 (476)
Q Consensus 52 l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~ 131 (476)
+.+.|.+..+...+....-++....-..-++.+.|.. ..+-..++..++++..+ ..+.--.+++|.++.+-++...-.
T Consensus 59 ~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~-~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~R 136 (711)
T COG1747 59 LSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY-GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGR 136 (711)
T ss_pred hhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHH
Confidence 3456888888888888887777777778888888865 45567788889998888 446677899999999988777778
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-CC------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHH-H
Q 039282 132 KYIRMEEIAGNVAAARLIFDRWMHWT-PD------QQAWLSYIKFELRYEQVELARQVFERLVQCHPN-VVSSWIKYA-K 202 (476)
Q Consensus 132 ~~~~~~~~~g~~~~A~~~~eral~~~-P~------~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~-~~~~w~~~a-~ 202 (476)
.++..++. ++.+.+...|.+++... |. ..+|..+..+.. .+.+....+..+.-..... -..+..... .
T Consensus 137 eLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~ 213 (711)
T COG1747 137 ELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYK 213 (711)
T ss_pred HHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 88888887 88889999999987543 32 145666554321 2333333333333222221 133333333 5
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 039282 203 FEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 203 ~~~~~g~~~~A~~~~e~al~~ 223 (476)
.|....++++|..+....++.
T Consensus 214 ~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 214 KYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HhccccCHHHHHHHHHHHhhh
Confidence 566677889999999888877
No 373
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=65.93 E-value=13 Score=21.94 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 196 SWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 196 ~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
+|..++..+.+.|++++|..+|.+..+.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4677777888888888888888887665
No 374
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=65.51 E-value=19 Score=32.16 Aligned_cols=50 Identities=22% Similarity=0.185 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 143 VAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 143 ~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
....++..++.+...|+..+...++..+...|+.++|+.+..++...+|.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 45566778888888999999999999999999999999999999999994
No 375
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=65.49 E-value=37 Score=33.27 Aligned_cols=46 Identities=15% Similarity=0.312 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Q 039282 145 AARLIFDRWMHWTPDQ----QAWLSYIKFELRYEQVELARQVFERLVQCH 190 (476)
Q Consensus 145 ~A~~~~eral~~~P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~ 190 (476)
+++.++...+..-|+. ..|...+.++...|.++.++.+|+.|+...
T Consensus 121 ei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ag 170 (353)
T PF15297_consen 121 EILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAG 170 (353)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Confidence 3344444444444442 345555555555555555555555555443
No 376
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.70 E-value=69 Score=33.81 Aligned_cols=81 Identities=16% Similarity=0.258 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039282 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR 207 (476)
Q Consensus 128 ~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~ 207 (476)
......+.+.+.+|-.+ ++|...|+++. ...+..+.|+++.|..+..++ ++..-|..++.+....
T Consensus 615 ~~rt~va~Fle~~g~~e-------~AL~~s~D~d~---rFelal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKE-------QALELSTDPDQ---RFELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSA 679 (794)
T ss_pred hhhhhHHhHhhhccchH-------hhhhcCCChhh---hhhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhc
Confidence 34556777777766544 45666666532 223456778888888776553 4578899999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q 039282 208 GEIDRARNVYERALEK 223 (476)
Q Consensus 208 g~~~~A~~~~e~al~~ 223 (476)
|++..|.+.|.++-+.
T Consensus 680 ~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 680 GELPLASECFLRARDL 695 (794)
T ss_pred ccchhHHHHHHhhcch
Confidence 9999999999998665
No 377
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=64.45 E-value=75 Score=31.23 Aligned_cols=48 Identities=27% Similarity=0.468 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 176 VELARQVFERLVQCHPN---VVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 176 ~~~A~~~~~r~l~~~p~---~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.+++..++...+...|+ .+..|+-++.++...|.++.++.+|+.||..
T Consensus 119 ~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~a 169 (353)
T PF15297_consen 119 KEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILA 169 (353)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHc
Confidence 45667777777777786 3678999999999999999999999999998
No 378
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.39 E-value=2.3e+02 Score=31.31 Aligned_cols=30 Identities=13% Similarity=0.058 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 039282 127 DQLWYKYIRMEEIAGNVAAARLIFDRWMHW 156 (476)
Q Consensus 127 ~~lw~~~~~~~~~~g~~~~A~~~~eral~~ 156 (476)
..+...||..+...|++++|..-|-+.+..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 455666777777777777777766666644
No 379
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=63.46 E-value=16 Score=23.20 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALE 87 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~ 87 (476)
++..+|.+-+..++|+.|..-|+++|.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445566666666666666666666664
No 380
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=63.21 E-value=49 Score=33.86 Aligned_cols=122 Identities=8% Similarity=-0.024 Sum_probs=68.4
Q ss_pred hCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 039282 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIF 150 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~ 150 (476)
..||+-.|-.-...+|...|..|..-...+.+....|.++.+...+.-+-.....-+..-.....-...+|.++.|...-
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 35666666666666777777777776677777777777777766665544444333333333344444556666666665
Q ss_pred HHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 151 DRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 151 eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
+-.+.-.-.. .+...-+--....|-++++.-.+.+.+...|.
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 5555433221 22221222223445566777777777766664
No 381
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=62.94 E-value=61 Score=30.69 Aligned_cols=58 Identities=24% Similarity=0.090 Sum_probs=53.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 168 KFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 168 ~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
..+.+.++++.|..+-++.+..+|.++.-+..-|..|.+.|...-|+.-++..++. +|
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~-~P 246 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH-CP 246 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh-CC
Confidence 34567789999999999999999999999999999999999999999999999999 99
No 382
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=62.60 E-value=29 Score=21.71 Aligned_cols=18 Identities=11% Similarity=-0.176 Sum_probs=6.3
Q ss_pred HHHHHHHHhCCHHHHHHH
Q 039282 132 KYIRMEEIAGNVAAARLI 149 (476)
Q Consensus 132 ~~~~~~~~~g~~~~A~~~ 149 (476)
.++......|++++|+.+
T Consensus 6 ~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 6 GLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHH
Confidence 333333333333333333
No 383
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.51 E-value=2e+02 Score=29.83 Aligned_cols=155 Identities=10% Similarity=0.022 Sum_probs=107.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH---
Q 039282 65 YAKWEGSQNEFDRARSMWELALEEDCRN----------HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWY--- 131 (476)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~eral~~~p~~----------~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~--- 131 (476)
.+.+..-.|+..+|..-...+.+..... +.+...+|.....-+.+++|..-|..|++.... ..+|.
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~-~dl~a~~n 407 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES-IDLQAFCN 407 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH-HHHHHHHH
Confidence 3444455799999888888777654332 345555566666778899999999999987553 44433
Q ss_pred -HHHHHHHHhCCHHHHHHHHHHHHhcCCC-----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC------C
Q 039282 132 -KYIRMEEIAGNVAAARLIFDRWMHWTPD-----------QQAWLSYIKFELRYEQVELARQVFERLVQCHPN------V 193 (476)
Q Consensus 132 -~~~~~~~~~g~~~~A~~~~eral~~~P~-----------~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~------~ 193 (476)
.++-.|...|+.+.--++++.. .|. ..+...|+-|....+++.+|+....+.++.... .
T Consensus 408 lnlAi~YL~~~~~ed~y~~ld~i---~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~ 484 (629)
T KOG2300|consen 408 LNLAISYLRIGDAEDLYKALDLI---GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLT 484 (629)
T ss_pred HhHHHHHHHhccHHHHHHHHHhc---CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHH
Confidence 4455566667665555555443 333 156888999999999999999999999986521 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 194 VSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 194 ~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.-....++......|+..++++...-+++.
T Consensus 485 a~~LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 485 ACSLVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHHHHHHHHHHHhcchHHHHhccchHHHH
Confidence 233445566667889999999988888764
No 384
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=61.69 E-value=98 Score=26.12 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhC---CHHHHHHHHHHHHh-cCCCH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Q 039282 127 DQLWYKYIRMEEIAG---NVAAARLIFDRWMH-WTPDQ--QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS 196 (476)
Q Consensus 127 ~~lw~~~~~~~~~~g---~~~~A~~~~eral~-~~P~~--~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~ 196 (476)
.+.-+.|+....... +....+.+++..++ -+|.. .....++--+.+.++++.++.+.+..++..|++.++
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 344444554443332 45556677777775 44443 233333444677888888888888888888775543
No 385
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=61.37 E-value=2.2e+02 Score=30.09 Aligned_cols=131 Identities=14% Similarity=-0.063 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHH-HH
Q 039282 73 NEFDRARSMWELALEEDCRNHTLWCKY--AEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAAR-LI 149 (476)
Q Consensus 73 ~~~~~A~~~~eral~~~p~~~~lw~~y--~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~-~~ 149 (476)
|.-.-+...+.-.+.++|.++.+.+.+ .-++...+....+.-.+..++..+|........++......|..-.+. .+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 333446666666667889999887766 444455677778888899999999998888888888776666655554 44
Q ss_pred HHHHHhcCCCHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039282 150 FDRWMHWTPDQQA-------WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKF 203 (476)
Q Consensus 150 ~eral~~~P~~~~-------w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~ 203 (476)
.+.+....|.+.. ....++.....|...++....++++...|.++.+...++..
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 4557777787622 12234555566778888888899998888876665555444
No 386
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=61.33 E-value=67 Score=29.50 Aligned_cols=74 Identities=14% Similarity=0.073 Sum_probs=58.0
Q ss_pred HHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHH
Q 039282 170 ELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEER 249 (476)
Q Consensus 170 ~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~ 249 (476)
+.+.+.+..++...+.-++..|.+...-..+..++.-.|++++|..-++.+-.. .| +......+|...+..+.-
T Consensus 11 LL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l-~p-----~~t~~a~lyr~lir~ea~ 84 (273)
T COG4455 11 LLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATL-SP-----QDTVGASLYRHLIRCEAA 84 (273)
T ss_pred HHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhc-Cc-----ccchHHHHHHHHHHHHHH
Confidence 456677888888888889999988888888888899999999999998888887 66 444456677776665543
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=60.73 E-value=17 Score=23.92 Aligned_cols=26 Identities=23% Similarity=0.512 Sum_probs=23.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 198 IKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 198 ~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
+.++..|...|+.+.|+.+++..+..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56889999999999999999999965
No 388
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=60.03 E-value=19 Score=21.13 Aligned_cols=26 Identities=4% Similarity=0.023 Sum_probs=14.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 96 WCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 96 w~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
|..++..+.+.|++++|..+|.++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555555555555555555543
No 389
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=58.42 E-value=39 Score=31.86 Aligned_cols=43 Identities=14% Similarity=-0.001 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 78 ARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120 (476)
Q Consensus 78 A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral 120 (476)
|+..|.+|+.+.|.+...|+.+|-+....|+.-.|.-.|-|++
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 3445555555555555555555555555555544554444544
No 390
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=56.48 E-value=27 Score=20.58 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 196 SWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 196 ~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
+|..++..+.+.|+.+.|..+|+...+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5666777777777777777777776654
No 391
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=55.82 E-value=1.5e+02 Score=27.64 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhCCHHHHHHH
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLPH------VDQLWYKYIRMEEIAGNVAAARLI 149 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~------~~~lw~~~~~~~~~~g~~~~A~~~ 149 (476)
.+-..++..+...|+++.|..+|+.+...... ...+...+..+....|+.+....+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 34445666666777777777777777544321 123333444444455555554443
No 392
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=55.48 E-value=29 Score=22.03 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 95 LWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 95 lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.+..+|++-+..+++..|..-|.+|+.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4667788888888888888888888765
No 393
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=54.03 E-value=2.2e+02 Score=27.83 Aligned_cols=99 Identities=12% Similarity=0.069 Sum_probs=65.9
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----HHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHhCCCCH
Q 039282 126 VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD----QQAWLSYI-------KFELRYEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 126 ~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~----~~~w~~~~-------~~~~~~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
..++|...+.++.+.|+.+.|.+.+.+.++..-. -++....+ +...-...+++|..++++.-.-... -
T Consensus 103 v~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRr-N 181 (393)
T KOG0687|consen 103 VREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERR-N 181 (393)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhh-h
Confidence 4678999999999999999988877766554332 23333333 3333345677777777775443322 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 195 SSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 195 ~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
..-.-.|-+.+...++..|-.+|-.++.+ +.
T Consensus 182 RlKvY~Gly~msvR~Fk~Aa~Lfld~vsT-Ft 212 (393)
T KOG0687|consen 182 RLKVYQGLYCMSVRNFKEAADLFLDSVST-FT 212 (393)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHccc-cc
Confidence 12223366667778999999999999988 65
No 394
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=53.88 E-value=67 Score=32.91 Aligned_cols=122 Identities=10% Similarity=-0.119 Sum_probs=92.4
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhhhHHHHHHH
Q 039282 104 MINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP-DQQAWLSYIKFELRYEQVELARQV 182 (476)
Q Consensus 104 ~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P-~~~~w~~~~~~~~~~g~~~~A~~~ 182 (476)
...|++-.|-.-...++...|..+..-...+.+...+|.++.+...+.-+-..-. .+........-....|.++.|.+.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 4568888888888888998999898888899999999999999888765533322 234556666667778899999998
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 183 FERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 183 ~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
-+-++...-.++++..-.+.-....|-++++.-.+++.+.. .|
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~-~~ 422 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLL-NP 422 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhcc-CC
Confidence 88888766666666555555556677888898888888877 55
No 395
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=52.75 E-value=1e+02 Score=28.40 Aligned_cols=55 Identities=9% Similarity=-0.012 Sum_probs=30.1
Q ss_pred hCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 039282 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH 125 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~ 125 (476)
..+....|+...+.-++.+|.+...-..|.+++.-.|++++|..-++-+-+..|.
T Consensus 13 ~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~ 67 (273)
T COG4455 13 DDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ 67 (273)
T ss_pred HhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence 3444555555555555555555555555555555555555555555555555554
No 396
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=52.43 E-value=55 Score=30.84 Aligned_cols=62 Identities=11% Similarity=0.019 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039282 44 KRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI 105 (476)
Q Consensus 44 a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~ 105 (476)
|+..|.+|+...|.+...|..+|.+....|+.=.|.=.|-|++.+..-.+.+...+..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999997654457777777776555
No 397
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=51.41 E-value=3.9e+02 Score=30.50 Aligned_cols=118 Identities=15% Similarity=0.223 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHh----CCC-HHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC
Q 039282 58 DTAVWINYAKWEGS----QNE-FDRARSMWELALEE------DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV--LP 124 (476)
Q Consensus 58 ~~~~w~~~a~~~~~----~~~-~~~A~~~~eral~~------~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~--~p 124 (476)
-...|.+|..|... .+. ....+.++++++.. ++.++.+...+.. +.....+..++.+|..+... .+
T Consensus 33 Pl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgIg~ 111 (974)
T KOG1166|consen 33 PLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAEDFFSYLENKGIGT 111 (974)
T ss_pred chhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhccccc
Confidence 36789999888765 233 56677777877743 2333442222221 23344566777777777654 23
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhhH
Q 039282 125 HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT--PDQQAWLSYIKFELRYEQV 176 (476)
Q Consensus 125 ~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~--P~~~~w~~~~~~~~~~g~~ 176 (476)
....++..|+..++..+.+..|..+|...++.. |...+-..|..|..+.+.-
T Consensus 112 ~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 112 TLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhh
Confidence 456677777777777788888888888887653 4556666666666665543
No 398
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=50.76 E-value=1.1e+02 Score=29.26 Aligned_cols=50 Identities=10% Similarity=0.131 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcHHHHH
Q 039282 82 WELALEEDCRNHTLWCKYAEFEMIN--KFINHARNVWDRAVAVLPHVDQLWY 131 (476)
Q Consensus 82 ~eral~~~p~~~~lw~~y~~~e~~~--~~~~~A~~~~~ral~~~p~~~~lw~ 131 (476)
.+.++..+|.+..+|..--.++... .+++.-..+..+.+..+|++-..|.
T Consensus 97 ~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~ 148 (328)
T COG5536 97 LDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWS 148 (328)
T ss_pred HHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceee
Confidence 4445555555555555444433332 3344444455555555555444443
No 399
>KOG1972 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.31 E-value=1e+02 Score=33.73 Aligned_cols=153 Identities=12% Similarity=0.071 Sum_probs=84.4
Q ss_pred HHhCCCCHHHHHHHHHHHHh--------CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 039282 52 IRRVPGDTAVWINYAKWEGS--------QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVL 123 (476)
Q Consensus 52 l~~~p~~~~~w~~~a~~~~~--------~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~ 123 (476)
.+.++.+...|..|.+..+. -+..+.-+ .++..+...|.+...|..|+.++....+-..-+-.=.++.. .
T Consensus 715 ~k~s~~~~~~y~~ycqiq~~~~~~S~l~f~~~~k~r-F~e~~v~~fsrn~~~~e~wa~l~s~l~qk~r~rl~~~k~~~-~ 792 (913)
T KOG1972|consen 715 PKLSLTEQSLYRSYCQIQIKHFWASNLAFYNLPKVR-FFEEGVTLFSRNAFGWELWAELESELRQKIRKRLSSTKNEV-D 792 (913)
T ss_pred cccCchhHHHHHHHHHHHHHHHHhhhhhccccccee-eeccchhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhh-c
Confidence 34556677788888844432 23334444 56666788899999999999887654332221111111111 0
Q ss_pred CCcHHHHHHHHHHHHHhCCHHHH-HHHHHHHH-----hcCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Q 039282 124 PHVDQLWYKYIRMEEIAGNVAAA-RLIFDRWM-----HWTPD-QQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS 196 (476)
Q Consensus 124 p~~~~lw~~~~~~~~~~g~~~~A-~~~~eral-----~~~P~-~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~ 196 (476)
..+..+|......+........| ...|..+. ...|. +..|..|+.++...++.+....++.+++..+|-.-.+
T Consensus 793 ~~n~ai~~~~~i~e~~~~~i~~a~t~mf~n~~~si~d~~l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sCpW~K~l 872 (913)
T KOG1972|consen 793 GRNAAIHAEQVIPETGDDQIMSANTGMFRNADRSILDEELPDENSKWRDYLEALSKLLNKERSKAASTKALDSCPWAKWL 872 (913)
T ss_pred chhhhhccccccccchHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhcCchHHHH
Confidence 11111121111111100001111 12221111 11243 3789999999999998999999999999999985555
Q ss_pred HHHHHHHHHH
Q 039282 197 WIKYAKFEMR 206 (476)
Q Consensus 197 w~~~a~~~~~ 206 (476)
...++...-.
T Consensus 873 ~md~ie~l~v 882 (913)
T KOG1972|consen 873 EMDVIEDLPV 882 (913)
T ss_pred HHHHHHhccc
Confidence 5565555544
No 400
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=50.28 E-value=42 Score=19.70 Aligned_cols=26 Identities=8% Similarity=-0.063 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 96 WCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 96 w~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
|..++..+.+.|+++.|..+|+.+..
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44455555555555555555555443
No 401
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=50.27 E-value=2e+02 Score=33.42 Aligned_cols=157 Identities=11% Similarity=0.032 Sum_probs=98.7
Q ss_pred HHHHHHhCCCHHHHHH------HHHHHH-HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHH
Q 039282 65 YAKWEGSQNEFDRARS------MWELAL-EEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLP--------HVDQL 129 (476)
Q Consensus 65 ~a~~~~~~~~~~~A~~------~~eral-~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p--------~~~~l 129 (476)
-++.....|.+..|++ ++.+.- ...|....-+..++.++...++.+.|...-.+++.... +...-
T Consensus 938 ~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 938 QGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 3344445666776666 555332 34667777788888889999999999888777765432 23344
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-----C---
Q 039282 130 WYKYIRMEEIAGNVAAARLIFDRWMHW--------TPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHP-----N--- 192 (476)
Q Consensus 130 w~~~~~~~~~~g~~~~A~~~~eral~~--------~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p-----~--- 192 (476)
+..++.++...++...|...+.++... .|.. .+......++...++++.|....+.++...- .
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~ 1097 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELE 1097 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchh
Confidence 555666677778888888888887644 2333 3345555556677899999999999887422 1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 193 VVSSWIKYAKFEMRRGEIDRARNVYERAL 221 (476)
Q Consensus 193 ~~~~w~~~a~~~~~~g~~~~A~~~~e~al 221 (476)
.......++.+....+++..|....+...
T Consensus 1098 ~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1098 TALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 12334444444444555555444444433
No 402
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.02 E-value=1.2e+02 Score=30.42 Aligned_cols=91 Identities=9% Similarity=-0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAV--------LPHVDQ 128 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~--------~p~~~~ 128 (476)
.+...++..+...|+++.|.+.|.|+-..+.+. +.+|+..+.+-+-.||+.|...+-.+|-.. .--..+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Q ss_pred HHHHHHHHHHHhCCHHHHHHHH
Q 039282 129 LWYKYIRMEEIAGNVAAARLIF 150 (476)
Q Consensus 129 lw~~~~~~~~~~g~~~~A~~~~ 150 (476)
+-..-+.....++.+..|...|
T Consensus 231 l~C~agLa~L~lkkyk~aa~~f 252 (466)
T KOG0686|consen 231 LKCAAGLANLLLKKYKSAAKYF 252 (466)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
No 403
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.77 E-value=3.3e+02 Score=28.53 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=42.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhccC--CHHHHH-HHHHHHhhcCCCCCCCCCCchhHHHHhhHh-hHHhhhhhhhHHhHH
Q 039282 285 IHFEKSQGERERRRALYERLVERTK--HLKVWI-SYAKFEASALSKDGGNPDLSEADLCERKKQ-SIRGARRSHRKIYHQ 360 (476)
Q Consensus 285 ~~~~~~~g~~e~Ar~l~e~~l~~~~--~~~vw~-~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~ 360 (476)
+-....+|+...|..+|...++... ..+.|. -+|.+|... +..+.+ .+.+|
T Consensus 456 g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~---------------l~~~~~g~~~e~---------- 510 (546)
T KOG3783|consen 456 GVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELAL---------------LYWDLGGGLKEA---------- 510 (546)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHH---------------HHHhcccChHHH----------
Confidence 3456689999999999999986532 344454 344444433 111123 48889
Q ss_pred HHhhhhccCchhHHHHHHHHHhhhc
Q 039282 361 FATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 361 ~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
++++.+|-....+.
T Consensus 511 -----------~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 511 -----------RALLLKAREYASDY 524 (546)
T ss_pred -----------HHHHHHHHhhcccc
Confidence 99999997766554
No 404
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=47.63 E-value=86 Score=23.66 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=32.7
Q ss_pred HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 172 RYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222 (476)
Q Consensus 172 ~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~ 222 (476)
..++.++|...+.+++...++.+.-|..++.+.....+.-+-+..+.-|+.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556678888888888888887777777776665544444444444444433
No 405
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=46.41 E-value=2.7e+02 Score=26.61 Aligned_cols=164 Identities=11% Similarity=0.126 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.....++.-+..+|.++..|+.+|.++.... -.+=-... .+-....-|.....+ .+.|...+.+|+.+
T Consensus 61 ~~~~~LkaWv~a~P~Sy~A~La~g~~~~~~A-----w~~RG~~~-A~~V~~~~W~~~~~~------~d~A~~~ll~A~~l 128 (277)
T PF13226_consen 61 ARLAVLKAWVAACPKSYHAHLAMGMYWVHRA-----WDIRGSGY-ASTVTEAQWLGAHQA------CDQAVAALLKAIEL 128 (277)
T ss_pred hHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-----HHHHccch-hcccCHHHHHHHHHH------HHHHHHHHHHHHhc
Confidence 3455666667777777777777776654321 00000000 011123334333322 45667777777777
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH-------HhcCCCHHHHHHHHHHHHHhh---------------------
Q 039282 123 LPHVDQLWYKYIRMEEIAGNVAAARLIFDRW-------MHWTPDQQAWLSYIKFELRYE--------------------- 174 (476)
Q Consensus 123 ~p~~~~lw~~~~~~~~~~g~~~~A~~~~era-------l~~~P~~~~w~~~~~~~~~~g--------------------- 174 (476)
+|+.......++.+....|..+=-..+|.-- ....-+..+|.....+..+.|
T Consensus 129 ~pr~~~A~~~m~~~s~~fgeP~WL~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~p~~lP~~L~~~~~~ 208 (277)
T PF13226_consen 129 SPRPVAAAIGMINISAYFGEPDWLAALFAGQPAESRPLAHAEYDPEVWQAAAALLARYGLNPLAELPQALPASLPARTED 208 (277)
T ss_pred CCCchHHHHHHHHHHhhcCCchHHHHHHCCCCCCcchHHHhhcchhhHHHHHHHHHHcCCCccccCcccCcccccchhhh
Confidence 7777666666666666666544322222100 000011245555555555554
Q ss_pred hHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHH
Q 039282 175 QVELAR-QVFERLVQCHPNVVSSWIKYAKFEMRR--GEIDRARNVYE 218 (476)
Q Consensus 175 ~~~~A~-~~~~r~l~~~p~~~~~w~~~a~~~~~~--g~~~~A~~~~e 218 (476)
+.+.+. -.+..++...|++..+...|+.|..-. |.++....+..
T Consensus 209 ~~~~~~~YWl~~~l~~~p~~~~~~~~y~~yl~PRWGgs~e~i~~~~~ 255 (277)
T PF13226_consen 209 ELEDPLDYWLRHALAIRPGDFEALEAYIYYLYPRWGGSHEEIDAFID 255 (277)
T ss_pred hccchHHHHHHHHHHhCcchHHHHHHHHHHhCCccCCCHHHHHHHhc
Confidence 223333 346778889999999999988887543 66666666554
No 406
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=45.69 E-value=5.4e+02 Score=29.85 Aligned_cols=70 Identities=13% Similarity=0.215 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccch
Q 039282 175 QVELARQVFERLVQCHPNV-VSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKES 253 (476)
Q Consensus 175 ~~~~A~~~~~r~l~~~p~~-~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~ 253 (476)
.++.-+.-|++|+..-... +..|-...++-.++|-++.|..+|.-. .+....++..|+..+...+.+
T Consensus 888 ~ID~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~------------~e~~k~i~~~ya~hL~~~~~~ 955 (1265)
T KOG1920|consen 888 KIDDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPD------------SEKQKVIYEAYADHLREELMS 955 (1265)
T ss_pred eHHHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccC------------HHHHHHHHHHHHHHHHHhccc
Confidence 3444445555555422211 224555556667778788777776543 345667999999999988888
Q ss_pred hHH
Q 039282 254 ESE 256 (476)
Q Consensus 254 e~A 256 (476)
+.|
T Consensus 956 ~~A 958 (1265)
T KOG1920|consen 956 DEA 958 (1265)
T ss_pred cHH
Confidence 877
No 407
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=45.50 E-value=1.3e+02 Score=22.70 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=18.3
Q ss_pred hCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 039282 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEF 102 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~ 102 (476)
.++....|+.++.++|...++...-|..++.+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l 49 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYL 49 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 34455666666666666655555555555443
No 408
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=44.74 E-value=1.3e+02 Score=32.83 Aligned_cols=136 Identities=14% Similarity=0.021 Sum_probs=80.1
Q ss_pred CCCCChHHhhHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC------CHHHHHHHH
Q 039282 29 QKSVDPTELYDYRLHKRNDFEDSIRRVPG--DTAVWINYAKWEGSQNEFDRARSMWELALEEDCR------NHTLWCKYA 100 (476)
Q Consensus 29 ~~i~d~eel~e~~~~a~~~~e~~l~~~p~--~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~------~~~lw~~y~ 100 (476)
..|.+..++..+-.+.|+-+. ||+ ..+.-..+..-|....|++..+.+-+..- .-|+ .+.+-+.|+
T Consensus 174 R~~y~G~~l~~~L~~mR~RlD-----np~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk-~iP~t~~vve~~nv~f~Ya 247 (1226)
T KOG4279|consen 174 REIYDGDQLNDYLDKMRTRLD-----NPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLK-RIPDTLKVVETHNVRFHYA 247 (1226)
T ss_pred hhccccHHHHHHHHHHHhhcC-----CccccCHHHHHHHHhhhccccchHHHHHHHHHHH-hCcchhhhhccCceEEEee
Confidence 456667777777655554332 343 45666666667777778887777666533 2332 122333444
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 039282 101 EFEMI---NKFINHARNVWDRAVAVLP-HVDQLWYKYIRMEEI---------AGNVAAARLIFDRWMHWTPDQQAWLSYI 167 (476)
Q Consensus 101 ~~e~~---~~~~~~A~~~~~ral~~~p-~~~~lw~~~~~~~~~---------~g~~~~A~~~~eral~~~P~~~~w~~~~ 167 (476)
-.+-+ -|+-++|.++.-.+++... ..+.++...+.++.. .+..+.|...|.++++..|....-.+++
T Consensus 248 FALNRRNr~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~a 327 (1226)
T KOG4279|consen 248 FALNRRNRPGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLA 327 (1226)
T ss_pred ehhcccCCCccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHH
Confidence 43332 3678888888888887643 345555555554432 2456778899999999988753333333
Q ss_pred HHH
Q 039282 168 KFE 170 (476)
Q Consensus 168 ~~~ 170 (476)
-++
T Consensus 328 tLL 330 (1226)
T KOG4279|consen 328 TLL 330 (1226)
T ss_pred HHH
Confidence 333
No 409
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=44.12 E-value=3.6e+02 Score=27.33 Aligned_cols=122 Identities=17% Similarity=0.261 Sum_probs=81.9
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC----C-----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CH----HHHHH
Q 039282 102 FEMINKFINHARNVWDRAVAVLP----H-----VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP---DQ----QAWLS 165 (476)
Q Consensus 102 ~e~~~~~~~~A~~~~~ral~~~p----~-----~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P---~~----~~w~~ 165 (476)
++..++.+.+|..+-+..+.... + ...+|+-+...++..|.....+..+...+.... +. -+...
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 34556778888776666554322 1 367888888888888988888887766554321 11 34555
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCC--CHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 166 YIKFELRYEQVELARQVFERLVQCHPN--VVSSWIKY----AKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 166 ~~~~~~~~g~~~~A~~~~~r~l~~~p~--~~~~w~~~----a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
+...+..++.+++|-.+..+.. .|. +..-|..| +..-.-++++..|.+.|-.|+.. .|
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rk-ap 278 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRK-AP 278 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHh-Cc
Confidence 6677778889999988887754 343 12233333 44445668999999999999998 77
No 410
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=42.92 E-value=5.9e+02 Score=29.54 Aligned_cols=9 Identities=33% Similarity=0.501 Sum_probs=5.7
Q ss_pred eeecCCCCC
Q 039282 445 DYLFPEESQ 453 (476)
Q Consensus 445 ~~~fp~~~~ 453 (476)
.+.+|-+++
T Consensus 1234 ~~~gpn~~q 1242 (1265)
T KOG1920|consen 1234 HLLGPNDPQ 1242 (1265)
T ss_pred cccCCcccc
Confidence 467777554
No 411
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=42.90 E-value=2.2e+02 Score=24.49 Aligned_cols=102 Identities=13% Similarity=0.041 Sum_probs=71.8
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHH
Q 039282 103 EMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQV 182 (476)
Q Consensus 103 e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~ 182 (476)
-....++..+..+++..--+-|+.+.+-..-+.++...|++.+|..+|.....-.|....- +.+
T Consensus 20 aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~----------------kAL 83 (153)
T TIGR02561 20 ALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYG----------------KAL 83 (153)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHH----------------HHH
Confidence 3447888999999998888899988888888888889999999999999987776553211 111
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 183 FERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222 (476)
Q Consensus 183 ~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~ 222 (476)
+--++..-. -..|..++.-....|.-..++.+.+....
T Consensus 84 ~A~CL~al~--Dp~Wr~~A~~~le~~~~~~a~~Lv~al~g 121 (153)
T TIGR02561 84 LALCLNAKG--DAEWHVHADEVLARDADADAVALVRALLG 121 (153)
T ss_pred HHHHHHhcC--ChHHHHHHHHHHHhCCCHhHHHHHHHHhc
Confidence 111121111 24688888877777777777777665543
No 412
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.24 E-value=43 Score=24.98 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=15.6
Q ss_pred HcCCHHHHHHHHHHHHHhhcC
Q 039282 206 RRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 206 ~~g~~~~A~~~~e~al~~~~p 226 (476)
..|++++|..+|..||+. +-
T Consensus 18 ~~gny~eA~~lY~~ale~-~~ 37 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL-CI 37 (75)
T ss_pred HhhhHHHHHHHHHHHHHH-HH
Confidence 457888888888888887 54
No 413
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=41.57 E-value=2e+02 Score=23.76 Aligned_cols=54 Identities=19% Similarity=0.116 Sum_probs=32.5
Q ss_pred HHHhhhHHHHH-------HHHHHHHHhCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHh
Q 039282 170 ELRYEQVELAR-------QVFERLVQCHPNVVSSWIKY----AKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 170 ~~~~g~~~~A~-------~~~~r~l~~~p~~~~~w~~~----a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
....|+++.+. .+|.|-=.++.+....|+.. +..+...|..++|...|+.+.+.
T Consensus 65 ~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 65 LAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34445554444 34444445666667777754 45567788999999888887765
No 414
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=41.43 E-value=2e+02 Score=23.71 Aligned_cols=51 Identities=12% Similarity=0.009 Sum_probs=35.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 039282 100 AEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFD 151 (476)
Q Consensus 100 ~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~e 151 (476)
+..+...+.......+++.++...+.++.+...++.++...+ .......+.
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 334445677888888889888887777788888888887653 333344444
No 415
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=40.76 E-value=4.3e+02 Score=27.26 Aligned_cols=124 Identities=9% Similarity=0.024 Sum_probs=78.9
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 039282 66 AKWEGSQNEFDRARSMWELALEEDCRNHTLWC-----KYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA 140 (476)
Q Consensus 66 a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~-----~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~ 140 (476)
|-.+..++++..|..+|.|.-+-...++.+.. ..+---.-.++++.-.......-+..|+++-+-.--+.+....
T Consensus 13 gf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 13 GFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred hHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 44556688999999999998865555443322 1111112234555555555555556777666666666667788
Q ss_pred CCHHHHHHHHHHHHhcCCC--------------HHHHHHHHH--HHHHhhhHHHHHHHHHHHHHh
Q 039282 141 GNVAAARLIFDRWMHWTPD--------------QQAWLSYIK--FELRYEQVELARQVFERLVQC 189 (476)
Q Consensus 141 g~~~~A~~~~eral~~~P~--------------~~~w~~~~~--~~~~~g~~~~A~~~~~r~l~~ 189 (476)
+.+..|...+..|-..-.+ ++.|...+. .+...|.+.++|.++.+.+..
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 8999999999888765221 134555443 346788899999888887753
No 416
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=40.06 E-value=4.2e+02 Score=27.00 Aligned_cols=103 Identities=11% Similarity=-0.042 Sum_probs=57.0
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCC-----------c-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH---H
Q 039282 103 EMINKFINHARNVWDRAVAVLPH-----------V-------DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ---Q 161 (476)
Q Consensus 103 e~~~~~~~~A~~~~~ral~~~p~-----------~-------~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~---~ 161 (476)
..+++++..|..-|..+|+++.. . .-+-.++..+|..+++.+.|...--|.|-.+|.. .
T Consensus 186 ~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnH 265 (569)
T PF15015_consen 186 CYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNH 265 (569)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHH
Confidence 45567777777777777776532 0 1234466667777788888888888888888864 4
Q ss_pred HHHHHHH-HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039282 162 AWLSYIK-FELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEM 205 (476)
Q Consensus 162 ~w~~~~~-~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~ 205 (476)
+|..-+. .+.++.+-.+...++.-+.-+...+..-...++.+|+
T Consensus 266 LrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyW 310 (569)
T PF15015_consen 266 LRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYW 310 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHH
Confidence 4444332 2233333333333333333333333344444444444
No 417
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=39.73 E-value=4.4e+02 Score=28.10 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=41.8
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHh--hhHHHHHHHHHHHHHhCCC
Q 039282 126 VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ--QAWLSYIKFELRY--EQVELARQVFERLVQCHPN 192 (476)
Q Consensus 126 ~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~--~~w~~~~~~~~~~--g~~~~A~~~~~r~l~~~p~ 192 (476)
.-..|..++..+...+++..||.-|.++++....+ ++....++..... .+...+++.|+...+-.|.
T Consensus 586 ~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dhlak~apt 656 (1141)
T KOG1811|consen 586 TFGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAKPAPT 656 (1141)
T ss_pred cccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhccCCcc
Confidence 35568888888888888888888888887765332 4444444443322 3456666666666665553
No 418
>PF09005 DUF1897: Domain of unknown function (DUF1897); InterPro: IPR015096 This domain is found in Psi proteins produced by Drosophila, and in various eukaryotic hypothetical proteins. It has no known function. ; PDB: 2BN6_A 2BN5_A.
Probab=39.38 E-value=27 Score=22.17 Aligned_cols=28 Identities=11% Similarity=0.323 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHhhHHHHHhhCCh
Q 039282 395 MLLEEWLNMERSFGELGDVNLVQAMLPK 422 (476)
Q Consensus 395 ~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 422 (476)
.--..|.++....|..+.+..|.+++..
T Consensus 10 DYSaqW~eYYr~~G~~~~A~~i~~q~~~ 37 (38)
T PF09005_consen 10 DYSAQWAEYYRQIGQHEEAEAIEQQIKA 37 (38)
T ss_dssp --CCHHHHHHCCCT-HHHHHHHHHCCT-
T ss_pred CHHHHHHHHHHHcCcHHHHHHHHHHHhc
Confidence 3456899999999999999999998764
No 419
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=38.34 E-value=4.3e+02 Score=26.55 Aligned_cols=56 Identities=11% Similarity=-0.087 Sum_probs=32.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhcCCCHH--HHHHHHHHH--HHcCCHHHHHHHHHHHHHh
Q 039282 67 KWEGSQNEFDRARSMWELALEEDCRNHT--LWCKYAEFE--MINKFINHARNVWDRAVAV 122 (476)
Q Consensus 67 ~~~~~~~~~~~A~~~~eral~~~p~~~~--lw~~y~~~e--~~~~~~~~A~~~~~ral~~ 122 (476)
.-....+++..|..+|+.++..-|.+.. .+..++..+ ...-++.+|...++..+..
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3344567788888888777764233332 333333322 3355677777777776654
No 420
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.10 E-value=4.1e+02 Score=25.46 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH------HHhhhHHHHH
Q 039282 110 NHARNVWDRAVAVLPHVDQLWYKYIRMEEIA--GNVAAARLIFDRWMHWTPDQ-QAWLSYIKFE------LRYEQVELAR 180 (476)
Q Consensus 110 ~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~--g~~~~A~~~~eral~~~P~~-~~w~~~~~~~------~~~g~~~~A~ 180 (476)
+.-...++.++..+|.+-.+|..--.+.... .++..-..+-++.+..+|.+ ..|....-++ ..........
T Consensus 91 dneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~ 170 (328)
T COG5536 91 DNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHEL 170 (328)
T ss_pred hcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHH
Confidence 3344557788888899889998887777665 45665566777888888776 4443322222 2222333444
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 039282 181 QVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 181 ~~~~r~l~~~p~~~~~w~~~ 200 (476)
+.-...+..++.+..+|...
T Consensus 171 eytt~~I~tdi~N~SaW~~r 190 (328)
T COG5536 171 EYTTSLIETDIYNNSAWHHR 190 (328)
T ss_pred HhHHHHHhhCCCChHHHHHH
Confidence 55555666777777777765
No 421
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.59 E-value=3.5e+02 Score=24.45 Aligned_cols=140 Identities=19% Similarity=0.201 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH-TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~-~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~ 137 (476)
......+....+..||+++|-.+|--.+...+=++ .+|--=++++...+......+.|+......|.....-..+.
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~~~~~~~~~~~--- 117 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYPSRKAFNQYYN--- 117 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHHHhhhccchhh---
Confidence 34555666777889999999999998886544343 46777777777777666555666666655552111100000
Q ss_pred HHhCCHHHHHHHHHHHHh-cCCC---HHHHHHHHHHHHHhhhHHHHHHHHHH---HHHhCC--CCHHHHHHHHHHHHH
Q 039282 138 EIAGNVAAARLIFDRWMH-WTPD---QQAWLSYIKFELRYEQVELARQVFER---LVQCHP--NVVSSWIKYAKFEMR 206 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~-~~P~---~~~w~~~~~~~~~~g~~~~A~~~~~r---~l~~~p--~~~~~w~~~a~~~~~ 206 (476)
.-..-.+|...-. ..|. ..+|..++....+....+++..+.++ ++..-| +++++|.-+|.++.-
T Consensus 118 -----~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i~~m~~L~ 190 (199)
T PF04090_consen 118 -----RRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFIRGMCHLW 190 (199)
T ss_pred -----hhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHH
Confidence 0000011111100 0111 14677777776544444455555444 444444 568899888877643
No 422
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=33.85 E-value=4.3e+02 Score=25.28 Aligned_cols=223 Identities=13% Similarity=0.050 Sum_probs=105.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-----cCC-H---HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 039282 66 AKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI-----NKF-I---NHARNVWDRAVAVLPHVDQLWYKYIRM 136 (476)
Q Consensus 66 a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~-----~~~-~---~~A~~~~~ral~~~p~~~~lw~~~~~~ 136 (476)
+..++..+++++--..|++......++...-..|...... ... . .....+++.-+..+|++...|...+.+
T Consensus 7 ir~LL~~~~f~eLd~~l~~~~~~~~~s~~~e~~Y~~~~~~~~l~D~~~~~~~~~~~~~~LkaWv~a~P~Sy~A~La~g~~ 86 (277)
T PF13226_consen 7 IRELLQARDFAELDALLARLLQAWLQSRDGEQRYFRAWMSSTLFDMDSVVDAWQARLAVLKAWVAACPKSYHAHLAMGMY 86 (277)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHhhhhccCccchHHHHHhhccccCcchhhhHHHhHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 3444556677766666666664332211111113322211 111 1 124555666666666666666555554
Q ss_pred HHHhCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 039282 137 EEIAGNVAAARLIFDRWMHW--TPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRAR 214 (476)
Q Consensus 137 ~~~~g~~~~A~~~~eral~~--~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~ 214 (476)
..... .--|.-.. .-....|...-. -.++|...+.+++..+|..+.++..+...-...|..+=-.
T Consensus 87 ~~~~A-------w~~RG~~~A~~V~~~~W~~~~~------~~d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~fgeP~WL~ 153 (277)
T PF13226_consen 87 WVHRA-------WDIRGSGYASTVTEAQWLGAHQ------ACDQAVAALLKAIELSPRPVAAAIGMINISAYFGEPDWLA 153 (277)
T ss_pred HHHHH-------HHHHccchhcccCHHHHHHHHH------HHHHHHHHHHHHHhcCCCchHHHHHHHHHHhhcCCchHHH
Confidence 43210 00010000 011233333222 2578888999999999998888888877777777765444
Q ss_pred HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCH
Q 039282 215 NVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGER 294 (476)
Q Consensus 215 ~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~ 294 (476)
.+|.-..-...| .........++.....++.+.|-..-+ + + -...|. .+..- ...+.
T Consensus 154 ~l~~g~~~~~~~---~~~~~~~~~~~~~~~~~l~~~g~~~~~------------~-~---p~~lP~--~L~~~--~~~~~ 210 (277)
T PF13226_consen 154 ALFAGQPAESRP---LAHAEYDPEVWQAAAALLARYGLNPLA------------E-L---PQALPA--SLPAR--TEDEL 210 (277)
T ss_pred HHHCCCCCCcch---HHHhhcchhhHHHHHHHHHHcCCCccc------------c-C---cccCcc--cccch--hhhhc
Confidence 444321100000 000001233444444444443321000 0 0 000011 11111 22455
Q ss_pred HHHHHH-HHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 295 ERRRAL-YERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 295 e~Ar~l-~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
++++.. +..+|...| +..+..+|+.|..--
T Consensus 211 ~~~~~YWl~~~l~~~p~~~~~~~~y~~yl~PR 242 (277)
T PF13226_consen 211 EDPLDYWLRHALAIRPGDFEALEAYIYYLYPR 242 (277)
T ss_pred cchHHHHHHHHHHhCcchHHHHHHHHHHhCCc
Confidence 667744 466678888 788889999887643
No 423
>PF08640 U3_assoc_6: U3 small nucleolar RNA-associated protein 6; InterPro: IPR013949 This entry represents U3 nucleolar RNA-associated proteins which are involved in nucleolar processing of pre-18S ribosomal RNA [].
Probab=33.55 E-value=1.5e+02 Score=22.53 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=37.7
Q ss_pred CCCCChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 039282 29 QKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQ 72 (476)
Q Consensus 29 ~~i~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~ 72 (476)
..+-+.+|+.+.. +.|..||-.|...+....-++.|+.++...
T Consensus 14 ~~lFt~~EI~~Iv-kkR~~fEy~L~rr~~~~~Dfl~YI~yE~~L 56 (83)
T PF08640_consen 14 KGLFTKEEIREIV-KKRRDFEYKLQRRGKKKSDFLRYIEYEMNL 56 (83)
T ss_pred hCCCCHHHHHHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3577888999987 889999999999888999999999999864
No 424
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.50 E-value=4.5e+02 Score=25.39 Aligned_cols=99 Identities=13% Similarity=0.065 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHhcCCCHH
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVAV----LPHVDQLWYKYIRMEEIAGN-------VAAARLIFDRWMHWTPDQQ 161 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~~----~p~~~~lw~~~~~~~~~~g~-------~~~A~~~~eral~~~P~~~ 161 (476)
..+|.+.++++..-++.+.+.....+.+.. .-. ..+....+.+-.-.|+ .+.+-.++++.-.|...+.
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~K-iDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLK-IDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccc-hhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhh
Confidence 477888888877777766665555444432 222 2223322332222222 3444455555555554454
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 162 AWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 162 ~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
.-..++.+.....++..|-.++...+..+.+
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S 224 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDILPTFES 224 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhccccc
Confidence 4455555666666677777777666655443
No 425
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.41 E-value=49 Score=30.63 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 039282 62 WINYAKWEGSQNEFDRARSMWELALEEDC 90 (476)
Q Consensus 62 w~~~a~~~~~~~~~~~A~~~~eral~~~p 90 (476)
.....-|.+..|+++.|..+.+-|+..+-
T Consensus 86 l~~~mvW~~D~Gd~~~AL~ia~yAI~~~l 114 (230)
T PHA02537 86 LMTVMVWRFDIGDFDGALEIAEYALEHGL 114 (230)
T ss_pred eeEeeeeeeeccCHHHHHHHHHHHHHcCC
Confidence 33445566778888888888888887653
No 426
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.41 E-value=93 Score=22.08 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=33.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 039282 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALE 87 (476)
Q Consensus 45 ~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~ 87 (476)
.+.+-..++..+++....+..+.-+++.|++++|.+.......
T Consensus 9 ~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 9 LEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 4455566777788888888899999999999999998888764
No 427
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=33.38 E-value=2.1e+02 Score=30.41 Aligned_cols=80 Identities=19% Similarity=0.194 Sum_probs=53.1
Q ss_pred HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 039282 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLI 149 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~ 149 (476)
.++...+.++...++-+.....+....+.-+.+...-+..+.|-.+|++....+|+ ...+.|++-....|-...|+.+
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Confidence 34455677777777766444444455555566666667777777888888777775 5666777777777777777766
Q ss_pred HH
Q 039282 150 FD 151 (476)
Q Consensus 150 ~e 151 (476)
+.
T Consensus 97 ~~ 98 (578)
T PRK15490 97 LK 98 (578)
T ss_pred HH
Confidence 66
No 428
>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]
Probab=33.23 E-value=7.9e+02 Score=28.17 Aligned_cols=116 Identities=19% Similarity=0.216 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHH----cCC-HHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-
Q 039282 93 HTLWCKYAEFEMI----NKF-INHARNVWDRAVAVLPH------VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ- 160 (476)
Q Consensus 93 ~~lw~~y~~~e~~----~~~-~~~A~~~~~ral~~~p~------~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~- 160 (476)
...|..|+..... .+. ....+.++++|+...++ ++.+...+.. +.....+..++.+|..+....-..
T Consensus 34 l~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgIg~~ 112 (974)
T KOG1166|consen 34 LDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAEDFFSYLENKGIGTT 112 (974)
T ss_pred hhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhccccch
Confidence 4678888886543 344 56788888888876654 3332222222 334456788888888776554332
Q ss_pred --HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCC
Q 039282 161 --QAWLSYIKFELRYEQVELARQVFERLVQCHPNV-VSSWIKYAKFEMRRGE 209 (476)
Q Consensus 161 --~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~-~~~w~~~a~~~~~~g~ 209 (476)
-.+..|+..+.+.+.+.+|..+|+..++..-.. ..+-..+..|..+.+.
T Consensus 113 lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~~r 164 (974)
T KOG1166|consen 113 LALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRLMR 164 (974)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhh
Confidence 457778888888899999999999998754331 3344445555544443
No 429
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.61 E-value=6.3e+02 Score=26.82 Aligned_cols=97 Identities=9% Similarity=-0.024 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCcHHH
Q 039282 58 DTAVWINYAKWEGSQN-----EFDRARSMWELALEEDCRNHTLWCKYAEFEMIN---KFINHARNVWDRAVAVLPHVDQL 129 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~-----~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~---~~~~~A~~~~~ral~~~p~~~~l 129 (476)
++.....++.+|.... +...|..+|.++-.... +..-..++.++... .++..|..+|..|... .+...
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A 362 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILA 362 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHH
Confidence 3446667888887743 67889999999987544 45555666665543 4788999999999876 34666
Q ss_pred HHHHHHHHHHh----CCHHHHHHHHHHHHhcCC
Q 039282 130 WYKYIRMEEIA----GNVAAARLIFDRWMHWTP 158 (476)
Q Consensus 130 w~~~~~~~~~~----g~~~~A~~~~eral~~~P 158 (476)
.+.++.++..- .+...|...|.++-...+
T Consensus 363 ~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 363 IYRLALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred HHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 66666666542 378899999999988874
No 430
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=32.36 E-value=1.1e+02 Score=25.59 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039282 72 QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI 105 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~ 105 (476)
.-+.+.|..+|+..+..+|++..+.+.+++..-.
T Consensus 89 Kle~e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 89 KLEPENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp TS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 3456889999999999999999999988886544
No 431
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=32.06 E-value=4.4e+02 Score=24.85 Aligned_cols=173 Identities=10% Similarity=0.038 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGS----QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI----NKFINHARN 114 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~----~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~----~~~~~~A~~ 114 (476)
.+...++.+-.. .+...-..++.++.. ..+...|...|..+. ...++..-..++.++.. ..+...|..
T Consensus 59 ~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~ 134 (292)
T COG0790 59 KALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALK 134 (292)
T ss_pred HHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHH
Confidence 556666665542 223566666666665 356788999999554 45677788888888776 448899999
Q ss_pred HHHHHHHhCCCc-HHHHHHHHHHHHHh----C---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hhhHHHHHHH
Q 039282 115 VWDRAVAVLPHV-DQLWYKYIRMEEIA----G---NVAAARLIFDRWMHWTPDQQAWLSYIKFELR----YEQVELARQV 182 (476)
Q Consensus 115 ~~~ral~~~p~~-~~lw~~~~~~~~~~----g---~~~~A~~~~eral~~~P~~~~w~~~~~~~~~----~g~~~~A~~~ 182 (476)
.|.+|....-.. ...-+.++.++..- + +...|+..|.++...... ..-..++.++.. ..+..+|...
T Consensus 135 ~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~-~a~~~lg~~y~~G~Gv~~d~~~A~~w 213 (292)
T COG0790 135 YYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNP-DAQLLLGRMYEKGLGVPRDLKKAFRW 213 (292)
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCH-HHHHHHHHHHHcCCCCCcCHHHHHHH
Confidence 999998873322 12255555555442 1 234788999988776533 333344433322 2378899999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHh
Q 039282 183 FERLVQCHPNVVSSWIKYAKFEMRRG---------------EIDRARNVYERALEK 223 (476)
Q Consensus 183 ~~r~l~~~p~~~~~w~~~a~~~~~~g---------------~~~~A~~~~e~al~~ 223 (476)
|.++..... ...+..++ ++...| +...|...+..+...
T Consensus 214 y~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 214 YKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred HHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 999988655 66677776 555555 778889999888776
No 432
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=31.25 E-value=1.1e+02 Score=25.24 Aligned_cols=31 Identities=13% Similarity=0.059 Sum_probs=17.6
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCHH
Q 039282 64 NYAKWEGSQNEFDRARSMWELALEEDCRNHT 94 (476)
Q Consensus 64 ~~a~~~~~~~~~~~A~~~~eral~~~p~~~~ 94 (476)
.+|..++..|+++.|...|-+|+.++|.-..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 4455555566666666666666666665433
No 433
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=31.18 E-value=5.5e+02 Score=25.74 Aligned_cols=121 Identities=12% Similarity=-0.028 Sum_probs=64.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHH--HHHHHHHH--HHHhCCHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHh
Q 039282 102 FEMINKFINHARNVWDRAVAVLPHVDQ--LWYKYIRM--EEIAGNVAAARLIFDRWMHWTPD----QQAWLSYIKFELRY 173 (476)
Q Consensus 102 ~e~~~~~~~~A~~~~~ral~~~p~~~~--lw~~~~~~--~~~~g~~~~A~~~~eral~~~P~----~~~w~~~~~~~~~~ 173 (476)
-....+++..|..+|..++...|.... .+..+... ....-++..|...++..+...-. ...+..........
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 219 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKAL 219 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHH
Confidence 345789999999999999987555444 23333222 34567899999999988765221 12222222222222
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHh
Q 039282 174 EQVELARQVFERLVQCHPNVVSSWIKYAKFE--MRRGEIDRARNVYERALEK 223 (476)
Q Consensus 174 g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~--~~~g~~~~A~~~~e~al~~ 223 (476)
..+........... ..+...-+...+.+.+ ...|+++.|..-+-|+++.
T Consensus 220 ~~~~~~~~~~~~~~-~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 220 ESILSALEDKKQRQ-KKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred Hhhccchhhhhccc-cccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 22111111111100 0011111222223333 2468999999999999887
No 434
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=31.10 E-value=77 Score=22.82 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=16.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 039282 203 FEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 203 ~~~~~g~~~~A~~~~e~al~~ 223 (476)
-..+.|+++.|...|..|++.
T Consensus 14 ~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 14 EADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 344568888888888888876
No 435
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=30.38 E-value=89 Score=23.22 Aligned_cols=19 Identities=32% Similarity=0.427 Sum_probs=14.2
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 039282 205 MRRGEIDRARNVYERALEK 223 (476)
Q Consensus 205 ~~~g~~~~A~~~~e~al~~ 223 (476)
...|++++|..+|..+|+.
T Consensus 17 D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 17 DQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 3457888888888888776
No 436
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=29.67 E-value=2.7e+02 Score=29.62 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 44 KRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 44 a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
++.+.+.-+.....+....+.-|++.-.-+..++|-.+|++.+..+|+ .....|+.-+.+.|-...|+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 27 AVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred HHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 444555555444444556666777777788999999999999999998 667888888888898888888887
No 437
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=28.99 E-value=5e+02 Score=24.49 Aligned_cols=147 Identities=11% Similarity=0.053 Sum_probs=93.3
Q ss_pred hCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hCC
Q 039282 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI----NKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEI----AGN 142 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~----~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~----~g~ 142 (476)
..+++..|...++.+-.. ..+..-..++.++.. ..+...|...|..+.. ..++...+.++.++.. ..+
T Consensus 53 ~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 53 YPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred ccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccC
Confidence 457778888888887652 222344444444433 4567888888885554 3557777778888766 347
Q ss_pred HHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHh----h---hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC
Q 039282 143 VAAARLIFDRWMHWTPDQ--QAWLSYIKFELRY----E---QVELARQVFERLVQCHPNVVSSWIKYAKFEMRR----GE 209 (476)
Q Consensus 143 ~~~A~~~~eral~~~P~~--~~w~~~~~~~~~~----g---~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~----g~ 209 (476)
...|...|+++....-.. ..-..++.++..- + +...|...|.++-... ++.....++.++..- .+
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcC
Confidence 888999999988774332 1233333333221 1 3347888888877654 466777777666432 27
Q ss_pred HHHHHHHHHHHHHh
Q 039282 210 IDRARNVYERALEK 223 (476)
Q Consensus 210 ~~~A~~~~e~al~~ 223 (476)
..+|...|.++.+.
T Consensus 207 ~~~A~~wy~~Aa~~ 220 (292)
T COG0790 207 LKKAFRWYKKAAEQ 220 (292)
T ss_pred HHHHHHHHHHHHHC
Confidence 78888888888775
No 438
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=27.46 E-value=2.7e+02 Score=23.60 Aligned_cols=44 Identities=11% Similarity=-0.003 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE 103 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e 103 (476)
+.-+..++-....|++.-|..+...++..+|+|..+....++.+
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al 114 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADAL 114 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 33444444444555555555555555555555555444444433
No 439
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=26.64 E-value=3.7e+02 Score=22.27 Aligned_cols=94 Identities=14% Similarity=0.021 Sum_probs=55.4
Q ss_pred HHHHHHHHH--HhCCCHHHHHHHHHHHHHhcCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 039282 61 VWINYAKWE--GSQNEFDRARSMWELALEEDCRN------------HTLWCKYAEFEMINKFINHARNVWDRAVA----- 121 (476)
Q Consensus 61 ~w~~~a~~~--~~~~~~~~A~~~~eral~~~p~~------------~~lw~~y~~~e~~~~~~~~A~~~~~ral~----- 121 (476)
.++.+...+ +..|-++.|..-+.+|.++..+- .--.-.++......|.++++...-+++|.
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 344444433 34588999999999998764331 12233345556778888776666666654
Q ss_pred --hCCCcHHHHHHH----HHHHHHhCCHHHHHHHHHHHH
Q 039282 122 --VLPHVDQLWYKY----IRMEEIAGNVAAARLIFDRWM 154 (476)
Q Consensus 122 --~~p~~~~lw~~~----~~~~~~~g~~~~A~~~~eral 154 (476)
++.+..++|+.. +.....+|..++|...|..+-
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 445556777644 334556677777777776654
No 440
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=26.47 E-value=8.2e+02 Score=26.21 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh
Q 039282 161 QAWLSYIKFELRYEQVELARQVFERLVQCHPNV-VSSWIKYAKFEMRR--GEIDRARNVYERALEK 223 (476)
Q Consensus 161 ~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~-~~~w~~~a~~~~~~--g~~~~A~~~~e~al~~ 223 (476)
.+|..++..+.+.+++..||.-|.++++....+ +++...++++-.-- .+....++.|+.....
T Consensus 588 ~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedipdvi~diin~ieGgpp~dVq~Vrem~dhlak~ 653 (1141)
T KOG1811|consen 588 GAWHAWGLACLKAENLAAAREKFKQAFKLKGEDIPDVIFDIINLIEGGPPRDVQDVREMLDHLAKP 653 (1141)
T ss_pred cHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCccchHHHHHHHhhcCCCcchHHHHHHHHHHhccC
Confidence 689999999999999999999999999875433 45555555543322 2566777777766554
No 441
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=26.46 E-value=5.9e+02 Score=24.57 Aligned_cols=158 Identities=8% Similarity=0.078 Sum_probs=91.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH---Hh--CCCcHHH
Q 039282 63 INYAKWEGSQNEFDRARSMWELALEEDCR--------NHTLWCKYAEFEMINKFINHARNVWDRAV---AV--LPHVDQL 129 (476)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~eral~~~p~--------~~~lw~~y~~~e~~~~~~~~A~~~~~ral---~~--~p~~~~l 129 (476)
+.+|+-....+++++|+..|.+.|..... ....-+.+.+++...|++..-........ .. -|...++
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 45677777788999999999999864211 23556778888888887554443332221 11 2334444
Q ss_pred HHHHHHHH-HHhCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC------CCCHH
Q 039282 130 WYKYIRME-EIAGNVAAARLIFDRWMHWTPDQ-------QAWLSYIKFELRYEQVELARQVFERLVQCH------PNVVS 195 (476)
Q Consensus 130 w~~~~~~~-~~~g~~~~A~~~~eral~~~P~~-------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~------p~~~~ 195 (476)
...++... ....+++..+.+.+..++|.... .+-..++.++...|.+..|..+..-.+... |+-..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 44444433 23456777788888887775543 223445667778888888887766555321 22223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 196 SWIKYAKFEMRRGEIDRARNVYERA 220 (476)
Q Consensus 196 ~w~~~a~~~~~~g~~~~A~~~~e~a 220 (476)
+++.-...+....++.+++.-+..|
T Consensus 167 vhllESKvyh~irnv~KskaSLTaA 191 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHH
Confidence 3333344444445555555554443
No 442
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.39 E-value=6.6e+02 Score=25.09 Aligned_cols=120 Identities=14% Similarity=0.041 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHH-h
Q 039282 196 SWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIV-G 274 (476)
Q Consensus 196 ~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~-~ 274 (476)
+...++.+..+.+.......+..+|+....+ .......+...+.....+.++|.-.. -+- ...+.+.-. .
T Consensus 104 lc~~l~~~~~~~~~p~~gi~ii~~av~k~~~-----~~~qlT~~H~~l~~~~L~ak~y~~~~---p~l-d~divei~~~n 174 (422)
T KOG2582|consen 104 LCHDLTEAVVKKNKPLRGIRIIMQAVDKMQP-----SNGQLTSIHADLLQLCLEAKDYASVL---PYL-DDDIVEICKAN 174 (422)
T ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHhcc-----CccchhhhHHHHHHHHHHhhcccccC---Ccc-chhHHHHhccC
Confidence 3344555555666666777777777776222 11133345555555555555543320 000 000111000 0
Q ss_pred ccCCCCch----hhH-HHHHHcCCHHHHHHHHHHHHhccC------CHHHHHHHHHHHhhc
Q 039282 275 KGKAPKDK----AYI-HFEKSQGERERRRALYERLVERTK------HLKVWISYAKFEASA 324 (476)
Q Consensus 275 ~~~~p~~~----~~~-~~~~~~g~~e~Ar~l~e~~l~~~~------~~~vw~~~a~~e~~~ 324 (476)
....|+.- .|+ ..+...+++++|.-+|+.++.... +.+.+..|.....-.
T Consensus 175 ~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~Pa~~vs~~hlEaYkkylLvsLI~ 235 (422)
T KOG2582|consen 175 PHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTTPAMAVSHIHLEAYKKYLLVSLIL 235 (422)
T ss_pred CCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhh
Confidence 01111100 222 234467899999999999987653 345666777666544
No 443
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=26.30 E-value=5e+02 Score=26.34 Aligned_cols=60 Identities=7% Similarity=0.017 Sum_probs=36.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhc---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 62 WINYAKWEGSQNEFDRARSMWELALEED---------CRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 62 w~~~a~~~~~~~~~~~A~~~~eral~~~---------p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.+.+.++..-.||+..|.++++-. +++ +-++.+....|-.++..+++..|.++|..+|..
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666789999988887652 111 223455555666666666666666666666543
No 444
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=26.16 E-value=4.9e+02 Score=26.58 Aligned_cols=91 Identities=14% Similarity=0.042 Sum_probs=59.4
Q ss_pred HHHHHHHH----HHHhCCCHHHHHHHHHHHHHhcCC-------------C---HH--HHHHHHHHHHHcCCHHHHHHHHH
Q 039282 60 AVWINYAK----WEGSQNEFDRARSMWELALEEDCR-------------N---HT--LWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 60 ~~w~~~a~----~~~~~~~~~~A~~~~eral~~~p~-------------~---~~--lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
+-|+..|. -...++.+..|.--|..||+++.. + +. +-.++..++++.++.+-|.+--.
T Consensus 173 Dkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~h 252 (569)
T PF15015_consen 173 DKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSH 252 (569)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHh
Confidence 45554443 233456666666666666654322 1 22 33457778999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHH
Q 039282 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIF 150 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~ 150 (476)
|.+.++|....-...-+.+...+..+.+|...+
T Consensus 253 rsI~lnP~~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 253 RSINLNPSYFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred hhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986555555555666666666665443
No 445
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=26.10 E-value=4.1e+02 Score=22.55 Aligned_cols=113 Identities=7% Similarity=-0.026 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHH-----------HHHHHHHh---------CCCHHHHHHHHHHHHHhcCCCHHHHHHHH
Q 039282 41 RLHKRNDFEDSIRRVPGDTAVWI-----------NYAKWEGS---------QNEFDRARSMWELALEEDCRNHTLWCKYA 100 (476)
Q Consensus 41 ~~~a~~~~e~~l~~~p~~~~~w~-----------~~a~~~~~---------~~~~~~A~~~~eral~~~p~~~~lw~~y~ 100 (476)
..+-.++..+.+...|-....|. .+...+.+ .|+..+....|-.. +. +...--...
T Consensus 18 V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~---n~-~se~vD~AL 93 (161)
T PF09205_consen 18 VKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKR---NK-LSEYVDLAL 93 (161)
T ss_dssp HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHT---T----HHHHHHH
T ss_pred HHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHh---cc-hHHHHHHHH
Confidence 34556667777776666555564 22333322 46777777777652 11 222222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 039282 101 EFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT 157 (476)
Q Consensus 101 ~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~ 157 (476)
......|.-+.-..++.........++.+...++..+...|+..++-.++.+|.+..
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 455677777777777777765444568999999999999999999999998887653
No 446
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=25.68 E-value=1.3e+03 Score=30.58 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=78.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----c-CCHHHHHHHHHHHHHhCCC--cHHHHHHH
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI----N-KFINHARNVWDRAVAVLPH--VDQLWYKY 133 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~----~-~~~~~A~~~~~ral~~~p~--~~~lw~~~ 133 (476)
....-|.+..+.|+.+.|-..|..|+.++-..+..|..+|..... . +++..|.+..-.-++..+. +...-..+
T Consensus 2814 ff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~i 2893 (3550)
T KOG0889|consen 2814 FFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKLI 2893 (3550)
T ss_pred HHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHHH
Confidence 344556666778888999999999998888888888888886432 2 3345554443333333332 12222222
Q ss_pred HHH--HHHhC-CHHHHHHHHHHHHhcCCCHHHHHHHHH---HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039282 134 IRM--EEIAG-NVAAARLIFDRWMHWTPDQQAWLSYIK---FELRYEQVELARQVFERLVQCHPNVVSSWIKYA 201 (476)
Q Consensus 134 ~~~--~~~~g-~~~~A~~~~eral~~~P~~~~w~~~~~---~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a 201 (476)
+.+ ..... .....-++|++-+.--|- -.|..++- .....++...++.++.+.-+.+|.....+++-+
T Consensus 2894 akvLwLls~dda~~~l~~~~~k~l~~ip~-~~wl~~IPQLl~sLs~~e~~~~~~iL~kia~~yPQal~f~lRta 2966 (3550)
T KOG0889|consen 2894 AKVLWLLSFDDSLGTLGDVFDKFLGEIPV-WNWLYFIPQLLTSLSKKEAKLVRLILIKIAKSYPQALYFPLRTA 2966 (3550)
T ss_pred HHHHHHHHhccccchHHHHHHHhhccCCc-hhhhhhhHHHHhhccccchhHHHHHHHHHHHhchHHHHHHHHHH
Confidence 221 11111 111222445554433332 23544443 334667788888888888888888555555433
No 447
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=25.49 E-value=1.3e+02 Score=22.16 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=15.0
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 039282 204 EMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 204 ~~~~g~~~~A~~~~e~al~~ 223 (476)
....|++++|..+|..|++.
T Consensus 16 ~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 16 EDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 34557888888888888776
No 448
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=24.88 E-value=5.1e+02 Score=23.22 Aligned_cols=38 Identities=16% Similarity=0.211 Sum_probs=25.0
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039282 166 YIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFE 204 (476)
Q Consensus 166 ~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~ 204 (476)
.+..+.+.|++++|.+++++... +|++...-..+..+-
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHH
Confidence 34566778888888888888877 666554444444443
No 449
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=24.52 E-value=1.3e+02 Score=22.53 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=14.4
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 039282 204 EMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 204 ~~~~g~~~~A~~~~e~al~~ 223 (476)
+...|++++|...|..+|+.
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 34557788888888877776
No 450
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=23.86 E-value=1.1e+02 Score=30.66 Aligned_cols=19 Identities=16% Similarity=0.059 Sum_probs=9.3
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q 039282 90 CRNHTLWCKYAEFEMINKF 108 (476)
Q Consensus 90 p~~~~lw~~y~~~e~~~~~ 108 (476)
-..|..|...++.++..||
T Consensus 347 ~ddPetWv~vAEa~I~LGN 365 (404)
T PF12753_consen 347 EDDPETWVDVAEAMIDLGN 365 (404)
T ss_dssp S--TTHHHHHHHHHHHHHH
T ss_pred cCChhHHHHHHHHHhhhhc
Confidence 3445555555555555554
No 451
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=23.46 E-value=1.5e+02 Score=22.21 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=16.1
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 039282 203 FEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 203 ~~~~~g~~~~A~~~~e~al~~ 223 (476)
-+.+.|++++|...|..+++.
T Consensus 15 e~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 15 QRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHccCHHHHHHHHHHHHHH
Confidence 344568888888888888876
No 452
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.07 E-value=1.1e+03 Score=26.44 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhC------CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hcC
Q 039282 43 HKRNDFEDSIRRV------PGD-TAVWINYAKWEGSQNEFDRARSMWELALE-EDC 90 (476)
Q Consensus 43 ~a~~~~e~~l~~~------p~~-~~~w~~~a~~~~~~~~~~~A~~~~eral~-~~p 90 (476)
-...+|.-|+... +.. .++...||..+...|+++.|...|-+++. ++|
T Consensus 345 ~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~ 400 (933)
T KOG2114|consen 345 FKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP 400 (933)
T ss_pred HHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence 3456666665432 111 35788999999999999999999999885 344
No 453
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.99 E-value=1e+03 Score=26.21 Aligned_cols=162 Identities=12% Similarity=0.065 Sum_probs=88.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH---HHhcCCC---HHHHHHHHHHHHHc-----C--C-----HHHHHHHH
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELA---LEEDCRN---HTLWCKYAEFEMIN-----K--F-----INHARNVW 116 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~A~~~~era---l~~~p~~---~~lw~~y~~~e~~~-----~--~-----~~~A~~~~ 116 (476)
.|...-+=+-..++|.-.|++++|.+.-=+| +.+++.+ ..+-.++++.+... + . -++-+.+.
T Consensus 55 F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~Vd~~S~y~etivak~id~yi~~~~~~~~~~~~~~~iD~rL~~iv 134 (929)
T KOG2062|consen 55 FPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDVDENSDYVETIVAKCIDMYIETASETYKNPEQKSPIDQRLRDIV 134 (929)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccCccchhhHHHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHH
Confidence 3444444455667777788999998886666 2455554 24455555554321 1 1 35678889
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHhhh-HHHHHHHHHHHHH---hCC
Q 039282 117 DRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM-HWTPDQQAWLSYIKFELRYEQ-VELARQVFERLVQ---CHP 191 (476)
Q Consensus 117 ~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral-~~~P~~~~w~~~~~~~~~~g~-~~~A~~~~~r~l~---~~p 191 (476)
+|++..+-...++|..++...+.. ...++++++ ..+...........+.....+ .+--.+++...+. ..|
T Consensus 135 ~rmi~kcl~d~e~~~aiGia~E~~-----rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~ 209 (929)
T KOG2062|consen 135 ERMIQKCLDDNEYKQAIGIAFETR-----RLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLP 209 (929)
T ss_pred HHHHHHhhhhhHHHHHHhHHhhhh-----hHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence 999998888778888887765432 234555543 222222333333333333222 1112222232222 233
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 192 NVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 192 ~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
. | -++..+.++.-..+.+.+..++++.++.
T Consensus 210 ~-P-Dy~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 210 S-P-DYFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred C-C-CeeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 3 2 2345556666667777777777776665
No 454
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=22.48 E-value=7.9e+02 Score=24.58 Aligned_cols=138 Identities=8% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH--------HHHHHHHHHHhCCH--HHHH
Q 039282 78 ARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL--------WYKYIRMEEIAGNV--AAAR 147 (476)
Q Consensus 78 A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~l--------w~~~~~~~~~~g~~--~~A~ 147 (476)
..+++..++...|+..++|..+..+..+..-...-+...+.++...-.-..- --..+......++. ..-|
T Consensus 108 ~~~ll~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~Le~e~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR 187 (372)
T PRK15338 108 LEEFLRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKHVEEETDPKTLKAGINCALKARLFGKALSLKPGLLR 187 (372)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHHHHHHHHhhcCCCHHHHH
Q ss_pred HHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039282 148 LIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNV 216 (476)
Q Consensus 148 ~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~ 216 (476)
.+|...+..+... .+|..++.-+ ..++.+.+.....+++..+-+..+.=+....|-.-.+++...+.+
T Consensus 188 ~lYR~Fl~~d~~~~~iY~~Wieey-g~~~R~~il~Fl~~AL~~DlqS~~Ps~~~~EFG~l~~~l~~LR~L 256 (372)
T PRK15338 188 ASYRQFLQSESHEVEIYSDWIASY-GYQRRLVVLDFIEGSLLTDIDANDASCSRLEFGQLLRRLTQLKML 256 (372)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHh-CccHHHHHHHHHHHHHHhHHhcCCCCCCHHHHHHHHHHHHHHHHH
No 455
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=21.53 E-value=2.4e+02 Score=23.23 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=23.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 039282 97 CKYAEFEMINKFINHARNVWDRAVAVLPHVDQLW 130 (476)
Q Consensus 97 ~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw 130 (476)
...|+.++..|+++.|..-|-+|+..+|....+.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~LL 100 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPAELL 100 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHH
Confidence 4566666777888888888888888887644443
No 456
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=20.84 E-value=3.8e+02 Score=22.47 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039282 44 KRNDFEDSIRRVPGDTAVWINYAKWE 69 (476)
Q Consensus 44 a~~~~e~~l~~~p~~~~~w~~~a~~~ 69 (476)
|.++|+.++..+|++..+.+.++...
T Consensus 95 Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 95 AEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 44445555555555554444444433
No 457
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=20.71 E-value=6.4e+02 Score=23.40 Aligned_cols=78 Identities=15% Similarity=0.083 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhccC-------CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhcc
Q 039282 296 RRRALYERLVERTK-------HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISS 368 (476)
Q Consensus 296 ~Ar~l~e~~l~~~~-------~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 368 (476)
..+.+++++..... ...+-..+|..+... |++++|
T Consensus 156 ~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~--------------------g~~~~A------------------ 197 (247)
T PF11817_consen 156 LIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRL--------------------GDYDKA------------------ 197 (247)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHC--------------------CCHHHH------------------
Confidence 34455555544432 234555677777776 899999
Q ss_pred CchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHH
Q 039282 369 LSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLV 416 (476)
Q Consensus 369 ~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v 416 (476)
..+|+.+...+... +=..=...++..+...-...||.++.-.+
T Consensus 198 ---~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 198 ---LKLLEPAASSYRRE--GWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred ---HHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999998777654 22122245666777777788887776554
No 458
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=20.41 E-value=5.4e+02 Score=21.86 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=41.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 167 IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.......|.-++--.++.........+|++...++..|.+.|+..++.++..+|.+.
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344556777777777887776544444999999999999999999999999999987
No 459
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=20.15 E-value=6.5e+02 Score=22.74 Aligned_cols=66 Identities=8% Similarity=0.072 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV-DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP 158 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~-~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P 158 (476)
......+....+..|+++.|-.+|--.+...+-+ -.+|..=+.+....+.-....+.|+......|
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~~y~ 107 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWLISFYP 107 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHHHHHHH
Confidence 3445555556677788888888888777765433 24676666666665554444455555554444
No 460
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=20.12 E-value=9.2e+02 Score=24.45 Aligned_cols=156 Identities=14% Similarity=0.134 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------cC-C-------------HHHHHHHHHHH
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI-------NK-F-------------INHARNVWDRA 119 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~-------~~-~-------------~~~A~~~~~ra 119 (476)
.-.++|.+..-.+|++.|.++|+-+.. +-.+-..|..++-.... .+ . ++.|...|.++
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~-Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKK-DFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHH-HHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 445789999999999999999998775 44455778777764322 11 1 23333334332
Q ss_pred H----HhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-CC-
Q 039282 120 V----AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT--PDQQAWLSYIKFELRYEQVELARQVFERLVQC-HP- 191 (476)
Q Consensus 120 l----~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~--P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~-~p- 191 (476)
- .........-...+.+....|.+..|...+-++.... .+..... .+-+ ++++-..| ..+.. .|
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~-~all------lE~~a~~~-~~~~~~~~~ 360 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFG-SALL------LEQAAYCY-ASLRSNRPS 360 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHh-hHHH------HHHHHHhh-cccccCCCC
Confidence 1 0111122334444455555666656555555554331 1100000 0000 11122222 00111 11
Q ss_pred -C-----CHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 192 -N-----VVSSWIKY-AKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 192 -~-----~~~~w~~~-a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
. -...|.-+ |.-+...|....|...|..|+.. ..
T Consensus 361 ~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~v-Y~ 401 (414)
T PF12739_consen 361 PGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQV-YE 401 (414)
T ss_pred ccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-hC
Confidence 1 12334444 55677889999999999999887 44
Done!