Query 039282
Match_columns 476
No_of_seqs 393 out of 3107
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 13:37:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039282.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039282hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 1.4E-32 4.8E-37 292.3 35.0 200 177-422 326-569 (679)
2 2ooe_A Cleavage stimulation fa 100.0 8.7E-30 3E-34 266.4 34.6 325 42-422 29-491 (530)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-26 8E-31 229.9 38.0 264 43-324 17-284 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 9.2E-27 3.1E-31 232.8 35.0 312 42-420 50-365 (388)
5 2uy1_A Cleavage stimulation fa 100.0 3.4E-27 1.2E-31 243.9 29.8 345 14-425 13-415 (493)
6 4e6h_A MRNA 3'-END-processing 100.0 6.2E-26 2.1E-30 241.2 32.8 310 42-385 83-574 (679)
7 2ond_A Cleavage stimulation fa 99.9 7.9E-26 2.7E-30 219.7 28.3 240 56-386 5-275 (308)
8 3ieg_A DNAJ homolog subfamily 99.9 3.6E-24 1.2E-28 209.8 38.3 288 42-385 20-339 (359)
9 2ooe_A Cleavage stimulation fa 99.9 2.4E-25 8.1E-30 232.7 28.5 320 15-385 31-496 (530)
10 2y4t_A DNAJ homolog subfamily 99.9 5.7E-24 2E-28 216.2 36.5 271 45-324 12-308 (450)
11 2y4t_A DNAJ homolog subfamily 99.9 1.1E-23 3.8E-28 214.1 36.9 285 42-385 43-362 (450)
12 2ond_A Cleavage stimulation fa 99.9 1.5E-24 5.2E-29 210.6 27.2 223 39-309 30-272 (308)
13 3hym_B Cell division cycle pro 99.9 4.7E-24 1.6E-28 206.9 29.4 302 49-412 12-323 (330)
14 3ieg_A DNAJ homolog subfamily 99.9 6.6E-23 2.2E-27 200.8 37.5 305 58-420 2-332 (359)
15 2uy1_A Cleavage stimulation fa 99.9 1E-24 3.5E-29 225.3 24.8 315 34-422 3-382 (493)
16 2xpi_A Anaphase-promoting comp 99.9 5.6E-23 1.9E-27 216.7 35.3 286 42-385 289-583 (597)
17 2xpi_A Anaphase-promoting comp 99.9 1.8E-23 6.2E-28 220.5 30.1 311 42-420 217-576 (597)
18 1fch_A Peroxisomal targeting s 99.9 6.6E-24 2.3E-28 209.7 24.2 287 37-384 38-362 (368)
19 4eqf_A PEX5-related protein; a 99.9 2.5E-23 8.7E-28 205.9 28.4 291 45-426 47-359 (365)
20 3hym_B Cell division cycle pro 99.9 7.8E-23 2.7E-27 198.2 28.4 273 42-324 39-318 (330)
21 3fp2_A TPR repeat-containing p 99.9 2.7E-22 9.2E-27 208.4 31.2 264 42-325 42-392 (537)
22 4eqf_A PEX5-related protein; a 99.9 1.2E-22 4.2E-27 200.9 25.4 233 42-324 82-340 (365)
23 2gw1_A Mitochondrial precursor 99.9 3.2E-22 1.1E-26 206.3 28.4 317 43-419 24-474 (514)
24 2gw1_A Mitochondrial precursor 99.9 3.1E-22 1.1E-26 206.4 28.4 316 58-419 5-440 (514)
25 3fp2_A TPR repeat-containing p 99.9 4.8E-21 1.6E-25 198.9 34.5 289 42-385 76-495 (537)
26 3cv0_A Peroxisome targeting si 99.9 1.1E-21 3.9E-26 189.7 26.9 266 61-385 23-319 (327)
27 2h6f_A Protein farnesyltransfe 99.9 5.6E-22 1.9E-26 198.1 22.4 251 51-324 89-366 (382)
28 1fch_A Peroxisomal targeting s 99.9 3.7E-21 1.2E-25 189.9 25.9 247 42-307 81-359 (368)
29 3cv0_A Peroxisome targeting si 99.9 4.1E-21 1.4E-25 185.8 23.2 250 42-309 38-317 (327)
30 2pl2_A Hypothetical conserved 99.9 8E-21 2.7E-25 174.7 23.1 191 56-256 2-204 (217)
31 2pl2_A Hypothetical conserved 99.9 3.1E-20 1.1E-24 170.7 22.4 180 42-221 22-212 (217)
32 3u4t_A TPR repeat-containing p 99.9 6.7E-20 2.3E-24 173.1 24.1 247 59-324 3-268 (272)
33 3uq3_A Heat shock protein STI1 99.9 4.3E-19 1.5E-23 165.4 28.2 227 58-383 4-238 (258)
34 3vtx_A MAMA; tetratricopeptide 99.8 3.9E-19 1.3E-23 158.1 24.5 169 57-226 3-172 (184)
35 2q7f_A YRRB protein; TPR, prot 99.8 4.9E-19 1.7E-23 163.8 22.6 197 42-247 40-237 (243)
36 4g1t_A Interferon-induced prot 99.8 9.6E-19 3.3E-23 178.9 26.6 334 42-418 68-454 (472)
37 2q7f_A YRRB protein; TPR, prot 99.8 5.1E-19 1.7E-23 163.7 22.3 217 58-324 22-240 (243)
38 4g1t_A Interferon-induced prot 99.8 9.4E-19 3.2E-23 179.0 26.4 278 42-385 155-463 (472)
39 2ho1_A Type 4 fimbrial biogene 99.8 3.1E-18 1E-22 159.8 27.3 212 53-314 30-246 (252)
40 2h6f_A Protein farnesyltransfe 99.8 5.3E-19 1.8E-23 176.5 22.9 200 42-251 114-323 (382)
41 3sf4_A G-protein-signaling mod 99.8 7.1E-18 2.4E-22 168.1 30.8 300 56-410 6-363 (406)
42 3uq3_A Heat shock protein STI1 99.8 3.9E-18 1.3E-22 158.9 26.8 218 42-318 22-254 (258)
43 1xnf_A Lipoprotein NLPI; TPR, 99.8 3.8E-18 1.3E-22 160.9 26.8 223 38-309 19-246 (275)
44 2vq2_A PILW, putative fimbrial 99.8 2E-17 6.8E-22 150.7 29.6 212 54-314 3-219 (225)
45 4abn_A Tetratricopeptide repea 99.8 2.2E-18 7.6E-23 177.4 25.5 210 37-256 80-311 (474)
46 2ho1_A Type 4 fimbrial biogene 99.8 2.7E-17 9.4E-22 153.3 26.4 184 42-226 54-240 (252)
47 3u4t_A TPR repeat-containing p 99.8 4E-18 1.4E-22 160.8 20.6 208 42-256 20-240 (272)
48 4a1s_A PINS, partner of inscut 99.8 3.7E-17 1.3E-21 163.9 27.5 198 56-256 45-282 (411)
49 3ro2_A PINS homolog, G-protein 99.8 7.4E-17 2.5E-21 155.5 28.0 274 59-419 5-328 (338)
50 2vq2_A PILW, putative fimbrial 99.8 8.3E-17 2.8E-21 146.6 26.8 184 42-226 25-213 (225)
51 3mkr_A Coatomer subunit epsilo 99.8 6.8E-17 2.3E-21 155.4 25.6 225 43-324 17-247 (291)
52 4gyw_A UDP-N-acetylglucosamine 99.8 8.5E-18 2.9E-22 180.6 21.1 173 53-226 3-176 (723)
53 4i17_A Hypothetical protein; T 99.8 6.4E-17 2.2E-21 149.0 22.4 170 56-226 4-211 (228)
54 3sf4_A G-protein-signaling mod 99.8 9.6E-17 3.3E-21 159.8 25.4 272 42-325 26-361 (406)
55 3vtx_A MAMA; tetratricopeptide 99.8 3.9E-17 1.3E-21 145.1 19.9 157 38-195 19-176 (184)
56 4a1s_A PINS, partner of inscut 99.8 5.3E-17 1.8E-21 162.7 23.4 256 42-309 65-374 (411)
57 3mkr_A Coatomer subunit epsilo 99.8 2E-16 6.8E-21 152.1 25.8 184 55-252 61-249 (291)
58 3ro2_A PINS homolog, G-protein 99.8 9.2E-17 3.1E-21 154.9 23.2 256 42-309 22-334 (338)
59 1ouv_A Conserved hypothetical 99.8 1.5E-15 5E-20 143.9 30.9 232 55-315 2-260 (273)
60 4abn_A Tetratricopeptide repea 99.8 1.2E-16 4.1E-21 164.4 25.1 204 74-324 83-305 (474)
61 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.7E-17 1.9E-21 152.8 18.6 225 68-385 14-248 (275)
62 3qky_A Outer membrane assembly 99.7 4.4E-16 1.5E-20 146.7 22.1 197 52-254 8-249 (261)
63 3nf1_A KLC 1, kinesin light ch 99.7 2E-16 6.9E-21 151.5 18.8 246 54-309 22-309 (311)
64 3as5_A MAMA; tetratricopeptide 99.7 4.5E-16 1.6E-20 136.9 19.6 168 58-226 7-175 (186)
65 3dra_A Protein farnesyltransfe 99.7 4E-15 1.4E-19 143.3 27.4 231 42-319 50-301 (306)
66 4i17_A Hypothetical protein; T 99.7 1.2E-15 4.3E-20 140.3 22.6 166 38-204 21-224 (228)
67 1ouv_A Conserved hypothetical 99.7 4.6E-14 1.6E-18 133.5 29.2 231 89-384 2-254 (273)
68 3urz_A Uncharacterized protein 99.7 2.8E-15 9.6E-20 136.5 19.3 167 58-226 3-188 (208)
69 4ga2_A E3 SUMO-protein ligase 99.7 1.4E-16 4.9E-21 137.3 9.8 145 65-209 3-149 (150)
70 3urz_A Uncharacterized protein 99.7 3E-15 1E-19 136.3 18.2 160 42-202 21-198 (208)
71 2xm6_A Protein corresponding t 99.7 1.3E-12 4.4E-17 134.7 40.1 250 42-323 60-340 (490)
72 2pzi_A Probable serine/threoni 99.7 5.7E-16 2E-20 166.5 15.4 182 54-248 389-579 (681)
73 2xm6_A Protein corresponding t 99.7 2.3E-12 7.9E-17 132.7 41.8 238 56-323 36-303 (490)
74 3ulq_A Response regulator aspa 99.7 8.6E-15 2.9E-19 145.8 22.4 244 52-309 90-370 (383)
75 4gyw_A UDP-N-acetylglucosamine 99.7 4.2E-15 1.4E-19 159.7 21.3 161 87-256 3-164 (723)
76 2r5s_A Uncharacterized protein 99.6 7.4E-16 2.5E-20 136.3 12.3 168 55-223 2-173 (176)
77 3qky_A Outer membrane assembly 99.6 2.6E-14 8.9E-19 134.4 23.2 190 86-312 8-230 (261)
78 2pzi_A Probable serine/threoni 99.6 1.5E-15 5.2E-20 163.1 15.1 181 42-223 408-598 (681)
79 3qou_A Protein YBBN; thioredox 99.6 1.1E-14 3.8E-19 139.6 19.0 169 55-223 113-284 (287)
80 3edt_B KLC 2, kinesin light ch 99.6 8E-15 2.7E-19 137.9 17.3 197 27-223 10-281 (283)
81 3as5_A MAMA; tetratricopeptide 99.6 1.7E-14 5.6E-19 126.7 18.0 153 42-194 25-178 (186)
82 3dss_A Geranylgeranyl transfer 99.6 1.9E-13 6.6E-18 132.4 26.7 232 40-318 45-316 (331)
83 4ga2_A E3 SUMO-protein ligase 99.6 5.2E-15 1.8E-19 127.4 11.9 134 42-175 14-149 (150)
84 2yhc_A BAMD, UPF0169 lipoprote 99.6 8.7E-14 3E-18 128.1 20.7 168 58-226 3-215 (225)
85 3edt_B KLC 2, kinesin light ch 99.6 1.2E-14 4.2E-19 136.7 15.1 228 70-307 12-281 (283)
86 3nf1_A KLC 1, kinesin light ch 99.6 2.8E-14 9.6E-19 136.4 16.7 184 42-226 44-309 (311)
87 1b89_A Protein (clathrin heavy 99.6 3.4E-15 1.1E-19 148.7 10.3 289 42-422 20-311 (449)
88 1qqe_A Vesicular transport pro 99.6 5.7E-14 1.9E-18 134.8 18.3 198 14-226 3-230 (292)
89 3ulq_A Response regulator aspa 99.6 5.8E-13 2E-17 132.5 26.2 249 80-384 85-371 (383)
90 1hz4_A MALT regulatory protein 99.6 3.3E-12 1.1E-16 126.3 31.0 274 60-385 15-326 (373)
91 1xi4_A Clathrin heavy chain; a 99.6 3.9E-12 1.3E-16 140.4 33.9 272 56-415 1102-1376(1630)
92 3gyz_A Chaperone protein IPGC; 99.6 1.9E-14 6.4E-19 124.2 11.4 119 43-161 20-138 (151)
93 3q15_A PSP28, response regulat 99.6 5.6E-13 1.9E-17 132.5 23.6 234 61-308 103-366 (378)
94 3dra_A Protein farnesyltransfe 99.6 1.5E-12 5E-17 125.3 25.4 166 75-249 49-232 (306)
95 2vsy_A XCC0866; transferase, g 99.6 9.8E-14 3.3E-18 145.8 18.8 160 42-201 6-169 (568)
96 4gco_A Protein STI-1; structur 99.5 8.4E-14 2.9E-18 116.1 14.0 117 51-167 5-122 (126)
97 2vsy_A XCC0866; transferase, g 99.5 2.1E-13 7.1E-18 143.3 19.4 154 72-226 2-159 (568)
98 3q7a_A Farnesyltransferase alp 99.5 4.7E-12 1.6E-16 123.2 25.2 238 72-319 67-345 (349)
99 4gco_A Protein STI-1; structur 99.5 2.1E-13 7.2E-18 113.7 13.6 120 84-203 4-124 (126)
100 2fo7_A Synthetic consensus TPR 99.5 1.2E-12 4E-17 108.2 18.1 133 60-192 2-135 (136)
101 3dss_A Geranylgeranyl transfer 99.5 3.2E-11 1.1E-15 116.7 30.8 206 71-316 41-275 (331)
102 1hz4_A MALT regulatory protein 99.5 1.6E-11 5.4E-16 121.3 28.7 253 42-309 31-324 (373)
103 2yhc_A BAMD, UPF0169 lipoprote 99.5 7.4E-12 2.5E-16 115.0 23.3 171 92-309 3-215 (225)
104 3qou_A Protein YBBN; thioredox 99.5 2.6E-12 8.7E-17 123.0 20.8 162 88-256 112-274 (287)
105 1qqe_A Vesicular transport pro 99.5 6.2E-13 2.1E-17 127.5 16.2 184 42-226 54-271 (292)
106 2r5s_A Uncharacterized protein 99.5 2.4E-13 8.4E-18 119.9 12.2 146 42-188 23-172 (176)
107 2vgx_A Chaperone SYCD; alterna 99.5 3.6E-13 1.2E-17 115.6 12.9 115 46-160 8-122 (148)
108 2xcb_A PCRH, regulatory protei 99.5 2.8E-13 9.5E-18 115.1 11.6 115 46-160 5-119 (142)
109 3gyz_A Chaperone protein IPGC; 99.5 1.1E-13 3.9E-18 119.2 7.9 114 80-193 23-137 (151)
110 2fo7_A Synthetic consensus TPR 99.4 6.4E-12 2.2E-16 103.6 18.4 132 94-226 2-134 (136)
111 2c2l_A CHIP, carboxy terminus 99.4 1.1E-12 3.6E-17 125.3 15.0 166 56-223 1-199 (281)
112 3q7a_A Farnesyltransferase alp 99.4 5.1E-12 1.7E-16 122.9 19.8 214 42-256 71-321 (349)
113 2vgx_A Chaperone SYCD; alterna 99.4 5.3E-13 1.8E-17 114.5 11.5 120 77-196 5-125 (148)
114 1p5q_A FKBP52, FK506-binding p 99.4 8E-13 2.7E-17 129.6 12.8 152 36-188 125-293 (336)
115 1a17_A Serine/threonine protei 99.4 2E-11 6.9E-16 105.2 19.4 131 59-189 13-146 (166)
116 2e2e_A Formate-dependent nitri 99.4 5.8E-12 2E-16 110.7 16.1 119 42-160 27-148 (177)
117 4f3v_A ESX-1 secretion system 99.4 5.3E-13 1.8E-17 125.9 9.7 183 42-226 23-239 (282)
118 3rjv_A Putative SEL1 repeat pr 99.4 3.9E-11 1.3E-15 109.3 22.0 173 43-223 4-197 (212)
119 1p5q_A FKBP52, FK506-binding p 99.4 4.2E-13 1.4E-17 131.6 9.4 179 43-223 83-294 (336)
120 2xcb_A PCRH, regulatory protei 99.4 1.2E-12 4.1E-17 111.2 10.7 119 80-198 5-124 (142)
121 3upv_A Heat shock protein STI1 99.4 1.1E-11 3.9E-16 102.4 16.1 102 56-157 1-102 (126)
122 1dce_A Protein (RAB geranylger 99.4 1E-11 3.5E-16 130.0 19.2 175 38-212 42-244 (567)
123 2e2e_A Formate-dependent nitri 99.4 4.4E-12 1.5E-16 111.5 13.8 128 70-197 21-152 (177)
124 3e4b_A ALGK; tetratricopeptide 99.4 1.2E-10 4.1E-15 118.8 25.5 171 42-223 55-280 (452)
125 2lni_A Stress-induced-phosphop 99.4 1.3E-11 4.4E-16 102.1 14.8 120 55-174 12-132 (133)
126 2vyi_A SGTA protein; chaperone 99.4 1.1E-11 3.9E-16 101.8 13.6 121 55-175 8-129 (131)
127 3q49_B STIP1 homology and U bo 99.4 3E-11 1E-15 101.0 16.2 120 53-172 3-128 (137)
128 3q15_A PSP28, response regulat 99.3 4.5E-11 1.5E-15 118.7 18.9 205 42-256 118-355 (378)
129 1na0_A Designed protein CTPR3; 99.3 8.3E-11 2.8E-15 95.7 17.2 117 55-171 4-122 (125)
130 3sz7_A HSC70 cochaperone (SGT) 99.3 4E-11 1.4E-15 104.1 16.1 106 55-160 7-112 (164)
131 1a17_A Serine/threonine protei 99.3 8E-11 2.7E-15 101.4 17.8 132 92-223 12-146 (166)
132 1hxi_A PEX5, peroxisome target 99.3 2.1E-11 7.3E-16 100.6 13.1 101 60-160 18-118 (121)
133 4f3v_A ESX-1 secretion system 99.3 1.7E-11 5.9E-16 115.5 13.6 206 71-324 18-254 (282)
134 4h7y_A Dual specificity protei 99.3 1.9E-11 6.6E-16 101.3 12.0 114 188-385 7-127 (161)
135 1elw_A TPR1-domain of HOP; HOP 99.3 8.9E-11 3E-15 94.5 16.0 112 58-169 3-115 (118)
136 2vyi_A SGTA protein; chaperone 99.3 3.8E-11 1.3E-15 98.6 13.7 123 88-210 7-130 (131)
137 3e4b_A ALGK; tetratricopeptide 99.3 4.4E-10 1.5E-14 114.6 24.4 121 95-221 178-314 (452)
138 2fbn_A 70 kDa peptidylprolyl i 99.3 5.3E-12 1.8E-16 113.4 8.9 136 43-178 22-174 (198)
139 2c2l_A CHIP, carboxy terminus 99.3 2E-11 6.9E-16 116.3 13.3 103 90-192 1-104 (281)
140 3upv_A Heat shock protein STI1 99.3 7.3E-11 2.5E-15 97.5 14.7 116 90-205 1-123 (126)
141 2lni_A Stress-induced-phosphop 99.3 5E-11 1.7E-15 98.5 13.6 121 89-209 12-133 (133)
142 2ifu_A Gamma-SNAP; membrane fu 99.3 4.3E-11 1.5E-15 115.5 15.0 158 66-226 43-225 (307)
143 2fbn_A 70 kDa peptidylprolyl i 99.3 1.2E-11 4.1E-16 111.1 10.4 158 65-222 10-185 (198)
144 4gcn_A Protein STI-1; structur 99.3 1.1E-10 3.6E-15 97.2 15.3 105 59-163 8-119 (127)
145 1na0_A Designed protein CTPR3; 99.3 2.1E-10 7.3E-15 93.2 17.0 121 88-208 3-125 (125)
146 1hh8_A P67PHOX, NCF-2, neutrop 99.3 2.6E-10 9E-15 102.9 18.9 130 61-193 8-154 (213)
147 4h7y_A Dual specificity protei 99.3 5.6E-11 1.9E-15 98.6 12.8 107 53-160 7-127 (161)
148 2kck_A TPR repeat; tetratricop 99.3 3.8E-11 1.3E-15 95.9 11.8 105 55-159 2-109 (112)
149 1elr_A TPR2A-domain of HOP; HO 99.3 9.2E-11 3.1E-15 96.4 14.1 117 58-174 3-126 (131)
150 1dce_A Protein (RAB geranylger 99.3 3E-10 1E-14 118.8 21.4 171 74-253 44-242 (567)
151 2dba_A Smooth muscle cell asso 99.3 1.3E-10 4.6E-15 97.9 15.1 117 53-169 22-142 (148)
152 2ifu_A Gamma-SNAP; membrane fu 99.2 1.1E-10 3.7E-15 112.6 15.9 198 43-309 9-225 (307)
153 1xi4_A Clathrin heavy chain; a 99.2 4.6E-09 1.6E-13 116.4 29.6 249 42-324 1122-1414(1630)
154 2qfc_A PLCR protein; TPR, HTH, 99.2 7.1E-10 2.4E-14 106.0 20.6 169 55-223 71-266 (293)
155 3sz7_A HSC70 cochaperone (SGT) 99.2 1.3E-10 4.6E-15 100.7 14.2 114 89-202 7-121 (164)
156 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 3.7E-11 1.3E-15 122.7 12.2 150 36-186 246-412 (457)
157 3q49_B STIP1 homology and U bo 99.2 1.9E-10 6.6E-15 96.0 14.3 119 87-205 3-127 (137)
158 1elw_A TPR1-domain of HOP; HOP 99.2 5.6E-10 1.9E-14 89.7 15.9 113 92-204 3-116 (118)
159 1kt0_A FKBP51, 51 kDa FK506-bi 99.2 1.6E-11 5.3E-16 125.6 6.6 153 71-223 246-415 (457)
160 1hxi_A PEX5, peroxisome target 99.2 3.1E-10 1.1E-14 93.5 13.1 101 94-194 18-119 (121)
161 2dba_A Smooth muscle cell asso 99.2 6E-10 2.1E-14 93.8 15.0 120 87-206 22-145 (148)
162 1hh8_A P67PHOX, NCF-2, neutrop 99.2 7.7E-10 2.6E-14 99.8 16.6 128 95-226 8-152 (213)
163 3mv2_B Coatomer subunit epsilo 99.2 2.2E-09 7.6E-14 102.4 20.4 178 43-226 84-284 (310)
164 3rkv_A Putative peptidylprolyl 99.2 5.7E-10 2E-14 96.5 14.4 113 59-171 11-143 (162)
165 4gcn_A Protein STI-1; structur 99.2 7.4E-10 2.5E-14 92.0 14.5 110 92-202 7-124 (127)
166 2if4_A ATFKBP42; FKBP-like, al 99.1 4.4E-11 1.5E-15 117.2 7.5 139 56-194 176-333 (338)
167 3u3w_A Transcriptional activat 99.1 2.2E-09 7.7E-14 102.4 18.6 162 62-223 78-266 (293)
168 1wao_1 Serine/threonine protei 99.1 6.5E-11 2.2E-15 121.6 7.8 132 61-192 8-153 (477)
169 2xev_A YBGF; tetratricopeptide 99.1 2.5E-09 8.4E-14 88.1 16.0 100 61-160 4-109 (129)
170 2hr2_A Hypothetical protein; a 99.1 7E-10 2.4E-14 95.1 12.7 102 59-160 11-135 (159)
171 3rjv_A Putative SEL1 repeat pr 99.1 6.5E-09 2.2E-13 94.4 19.9 142 76-223 3-158 (212)
172 1b89_A Protein (clathrin heavy 99.1 6.2E-10 2.1E-14 110.9 14.0 249 43-324 79-341 (449)
173 2kck_A TPR repeat; tetratricop 99.1 3.3E-10 1.1E-14 90.3 9.6 105 89-193 2-110 (112)
174 1zu2_A Mitochondrial import re 99.1 6.8E-10 2.3E-14 94.9 11.8 97 33-130 11-128 (158)
175 3gw4_A Uncharacterized protein 99.1 2E-09 7E-14 95.9 15.2 154 70-223 3-176 (203)
176 1zu2_A Mitochondrial import re 99.1 6.4E-10 2.2E-14 95.1 10.4 70 72-141 15-94 (158)
177 1elr_A TPR2A-domain of HOP; HO 99.0 2E-09 6.7E-14 88.2 12.4 115 91-206 2-124 (131)
178 2xev_A YBGF; tetratricopeptide 99.0 1.2E-08 4.1E-13 83.8 16.6 112 95-206 4-122 (129)
179 1ihg_A Cyclophilin 40; ppiase 99.0 3.8E-09 1.3E-13 104.7 15.5 122 59-180 223-361 (370)
180 3k9i_A BH0479 protein; putativ 99.0 7.4E-10 2.5E-14 90.3 8.4 88 43-130 8-98 (117)
181 3rkv_A Putative peptidylprolyl 99.0 6.9E-09 2.4E-13 89.6 15.1 109 93-226 11-128 (162)
182 2qfc_A PLCR protein; TPR, HTH, 99.0 1.8E-08 6.3E-13 96.0 19.4 148 42-189 92-266 (293)
183 1wao_1 Serine/threonine protei 99.0 8.5E-10 2.9E-14 113.2 10.0 122 37-159 19-153 (477)
184 3k9i_A BH0479 protein; putativ 99.0 8.8E-10 3E-14 89.8 8.0 91 71-161 2-95 (117)
185 2kat_A Uncharacterized protein 99.0 6.8E-09 2.3E-13 84.0 12.4 83 43-125 3-85 (115)
186 3gw4_A Uncharacterized protein 99.0 1.1E-08 3.8E-13 91.0 14.6 148 43-191 10-178 (203)
187 3mv2_B Coatomer subunit epsilo 98.9 1.3E-07 4.4E-12 90.2 22.0 158 60-223 72-240 (310)
188 2hr2_A Hypothetical protein; a 98.9 1E-08 3.5E-13 87.8 12.5 107 93-226 11-133 (159)
189 2if4_A ATFKBP42; FKBP-like, al 98.9 7E-10 2.4E-14 108.6 5.8 138 88-226 174-330 (338)
190 2kat_A Uncharacterized protein 98.9 2.1E-08 7.1E-13 81.1 13.0 84 77-160 3-86 (115)
191 3u3w_A Transcriptional activat 98.9 2.1E-08 7.1E-13 95.6 15.0 148 42-189 92-266 (293)
192 1ihg_A Cyclophilin 40; ppiase 98.9 1.6E-08 5.3E-13 100.2 14.2 123 93-215 223-362 (370)
193 3ro3_A PINS homolog, G-protein 98.9 1.6E-08 5.6E-13 85.7 12.3 138 59-223 9-158 (164)
194 4b4t_Q 26S proteasome regulato 98.9 2.4E-08 8.1E-13 100.2 15.4 164 60-223 5-204 (434)
195 1na3_A Designed protein CTPR2; 98.9 2.6E-08 8.8E-13 76.3 12.0 86 56-141 6-91 (91)
196 3ro3_A PINS homolog, G-protein 98.8 3.6E-08 1.2E-12 83.5 12.9 100 93-192 9-121 (164)
197 2l6j_A TPR repeat-containing p 98.8 3.9E-09 1.3E-13 84.3 5.3 94 58-151 3-102 (111)
198 3u64_A Protein TP_0956; tetrat 98.8 3.4E-07 1.2E-11 85.5 18.7 185 32-226 39-271 (301)
199 3ma5_A Tetratricopeptide repea 98.8 4.3E-08 1.5E-12 77.4 10.0 72 54-125 2-73 (100)
200 4g26_A Pentatricopeptide repea 98.8 2E-06 6.8E-11 88.5 25.1 162 60-223 27-204 (501)
201 4b4t_Q 26S proteasome regulato 98.7 1.7E-06 5.8E-11 86.6 20.8 185 96-324 7-229 (434)
202 2kc7_A BFR218_protein; tetratr 98.6 5.2E-08 1.8E-12 76.3 7.2 89 63-159 4-93 (99)
203 3ma5_A Tetratricopeptide repea 98.6 3.2E-07 1.1E-11 72.3 10.3 72 88-159 2-73 (100)
204 4g26_A Pentatricopeptide repea 98.6 9.4E-06 3.2E-10 83.4 23.9 176 94-320 27-219 (501)
205 3ly7_A Transcriptional activat 98.5 2.7E-06 9.3E-11 82.6 17.6 148 48-196 183-345 (372)
206 1na3_A Designed protein CTPR2; 98.5 6.4E-07 2.2E-11 68.3 10.8 79 92-170 8-87 (91)
207 2l6j_A TPR repeat-containing p 98.5 8.1E-08 2.8E-12 76.4 5.4 88 92-179 3-97 (111)
208 3u64_A Protein TP_0956; tetrat 98.5 2.4E-06 8.3E-11 79.7 15.0 176 77-310 50-272 (301)
209 3bee_A Putative YFRE protein; 98.4 1.5E-06 5E-11 67.6 9.8 71 55-125 2-75 (93)
210 2kc7_A BFR218_protein; tetratr 98.4 7.8E-07 2.7E-11 69.3 8.4 89 97-193 4-94 (99)
211 3bee_A Putative YFRE protein; 98.3 2.9E-06 9.8E-11 66.0 9.5 78 89-167 2-82 (93)
212 3ly7_A Transcriptional activat 98.3 9E-06 3.1E-10 78.9 14.8 120 42-162 216-345 (372)
213 1pc2_A Mitochondria fission pr 98.2 1.5E-05 5.1E-10 67.2 12.6 95 43-137 16-115 (152)
214 1klx_A Cysteine rich protein B 98.2 7E-05 2.4E-09 62.5 16.3 108 42-157 12-127 (138)
215 1klx_A Cysteine rich protein B 98.2 5.2E-05 1.8E-09 63.3 14.8 109 74-189 10-126 (138)
216 3n71_A Histone lysine methyltr 98.1 1.7E-05 6E-10 81.0 13.3 120 69-188 319-463 (490)
217 3n71_A Histone lysine methyltr 98.0 4.7E-05 1.6E-09 77.8 12.4 122 102-223 318-464 (490)
218 1pc2_A Mitochondria fission pr 97.9 0.00017 5.7E-09 60.8 11.7 87 74-160 13-104 (152)
219 3esl_A Checkpoint serine/threo 97.8 0.00063 2.2E-08 59.7 15.4 130 43-173 10-163 (202)
220 2v5f_A Prolyl 4-hydroxylase su 97.8 0.0003 1E-08 55.4 12.2 80 57-136 3-89 (104)
221 4a1g_A Mitotic checkpoint seri 97.7 0.00026 9E-09 59.4 11.1 126 41-173 6-149 (152)
222 2wvi_A Mitotic checkpoint seri 97.5 0.00066 2.3E-08 57.8 10.1 123 45-173 3-144 (164)
223 4aez_C MAD3, mitotic spindle c 97.3 0.0016 5.6E-08 58.1 11.2 125 42-172 52-197 (223)
224 2v5f_A Prolyl 4-hydroxylase su 97.3 0.002 7E-08 50.5 10.8 74 128-201 6-87 (104)
225 3qww_A SET and MYND domain-con 97.3 0.00072 2.5E-08 67.8 10.0 84 140-223 311-411 (433)
226 3qww_A SET and MYND domain-con 97.3 0.00084 2.9E-08 67.3 10.3 85 71-155 310-410 (433)
227 3esl_A Checkpoint serine/threo 97.1 0.03 1E-06 49.1 16.5 81 161-250 81-163 (202)
228 1nzn_A CGI-135 protein, fissio 97.1 0.0083 2.8E-07 48.6 12.1 94 43-136 19-117 (126)
229 3qwp_A SET and MYND domain-con 97.0 0.0037 1.3E-07 62.6 10.8 86 138-223 298-400 (429)
230 3qwp_A SET and MYND domain-con 96.9 0.0044 1.5E-07 62.1 10.7 85 71-155 299-399 (429)
231 4a1g_A Mitotic checkpoint seri 96.8 0.01 3.5E-07 49.7 10.7 75 161-249 72-148 (152)
232 1nzn_A CGI-135 protein, fissio 96.7 0.03 1E-06 45.3 12.2 85 75-159 17-106 (126)
233 4aez_C MAD3, mitotic spindle c 96.6 0.031 1.1E-06 49.8 13.0 137 74-249 50-197 (223)
234 2wvi_A Mitotic checkpoint seri 96.4 0.036 1.2E-06 47.1 11.2 76 161-250 67-144 (164)
235 3spa_A Mtrpol, DNA-directed RN 95.9 0.15 5.2E-06 55.6 15.6 95 94-189 128-230 (1134)
236 3o48_A Mitochondria fission 1 95.6 0.17 5.8E-06 41.1 11.4 100 32-136 18-121 (134)
237 1y8m_A FIS1; mitochondria, unk 95.5 0.29 9.9E-06 40.3 12.5 100 32-136 17-120 (144)
238 3ffl_A Anaphase-promoting comp 95.4 0.17 5.7E-06 42.9 11.1 62 61-122 22-92 (167)
239 3mkq_A Coatomer beta'-subunit; 95.3 1.9 6.5E-05 46.0 22.4 75 63-153 633-707 (814)
240 3mkq_B Coatomer subunit alpha; 95.1 1.4 4.9E-05 37.7 16.3 126 70-220 16-141 (177)
241 4gns_B Protein CSD3, chitin bi 95.0 0.15 5.1E-06 54.3 11.8 59 162-220 339-397 (754)
242 3spa_A Mtrpol, DNA-directed RN 94.7 0.43 1.5E-05 52.1 14.6 98 59-157 127-231 (1134)
243 3mkq_A Coatomer beta'-subunit; 94.7 0.66 2.3E-05 49.6 16.4 129 68-211 661-800 (814)
244 3mkq_B Coatomer subunit alpha; 94.1 0.94 3.2E-05 38.8 12.8 101 102-219 14-114 (177)
245 3o48_A Mitochondria fission 1 94.1 0.36 1.2E-05 39.2 9.5 84 76-160 24-111 (134)
246 4gns_B Protein CSD3, chitin bi 94.1 0.31 1E-05 51.9 11.7 112 42-153 266-397 (754)
247 3txn_A 26S proteasome regulato 93.9 1.1 3.7E-05 43.8 14.6 155 97-256 23-200 (394)
248 2ff4_A Probable regulatory pro 93.6 1.1 3.7E-05 43.8 14.1 100 71-188 127-233 (388)
249 3txn_A 26S proteasome regulato 93.0 7.2 0.00025 38.0 22.2 138 127-308 19-169 (394)
250 1y8m_A FIS1; mitochondria, unk 93.0 0.73 2.5E-05 37.8 9.6 84 76-160 23-110 (144)
251 3ffl_A Anaphase-promoting comp 91.6 1.4 4.9E-05 37.1 10.0 113 96-219 23-147 (167)
252 1zbp_A Hypothetical protein VP 90.3 5.1 0.00017 36.7 13.1 118 68-192 6-132 (273)
253 4b4t_R RPN7, 26S proteasome re 90.1 0.54 1.9E-05 46.7 7.2 64 59-122 131-197 (429)
254 1zbp_A Hypothetical protein VP 90.1 7.3 0.00025 35.6 13.9 124 170-309 7-131 (273)
255 2ff4_A Probable regulatory pro 89.8 1.3 4.5E-05 43.2 9.7 61 94-154 172-232 (388)
256 4fhn_B Nucleoporin NUP120; pro 89.4 11 0.00039 42.2 18.1 172 52-223 835-1050(1139)
257 1ya0_A SMG-7 transcript varian 83.8 6.3 0.00022 39.7 10.9 78 94-171 153-231 (497)
258 4b4t_P 26S proteasome regulato 81.0 25 0.00087 34.7 14.1 95 95-189 139-247 (445)
259 4b4t_R RPN7, 26S proteasome re 80.9 3.5 0.00012 40.8 7.6 99 127-226 131-239 (429)
260 4b4t_S RPN3, 26S proteasome re 79.1 35 0.0012 34.3 14.1 104 55-160 177-303 (523)
261 1ya0_A SMG-7 transcript varian 78.7 16 0.00056 36.7 11.8 81 127-207 152-233 (497)
262 4b4t_S RPN3, 26S proteasome re 77.2 4.1 0.00014 41.1 6.7 122 102-226 145-301 (523)
263 1qsa_A Protein (soluble lytic 74.0 86 0.0029 32.4 21.7 119 105-223 226-348 (618)
264 4fhn_B Nucleoporin NUP120; pro 70.0 49 0.0017 37.0 14.1 52 166-217 905-961 (1139)
265 3kae_A CDC27, possible protein 57.0 90 0.0031 26.4 15.9 60 66-125 69-146 (242)
266 3ax2_A Mitochondrial import re 55.6 30 0.001 24.6 5.7 35 63-97 21-55 (73)
267 4b4t_P 26S proteasome regulato 49.9 1.9E+02 0.0066 28.2 20.9 166 56-223 53-247 (445)
268 1wy6_A Hypothetical protein ST 47.7 1.1E+02 0.0039 24.9 15.4 80 141-223 75-154 (172)
269 2bn5_A PSI; nuclear protein, s 40.5 22 0.00075 20.8 2.4 25 397-421 5-29 (33)
270 1om2_A Protein (mitochondrial 37.1 40 0.0014 25.3 4.1 34 63-96 24-57 (95)
271 2ijq_A Hypothetical protein; s 35.8 1.7E+02 0.0059 24.2 8.3 53 70-122 43-104 (161)
272 2ijq_A Hypothetical protein; s 35.3 1.9E+02 0.0065 23.9 8.8 51 105-155 44-103 (161)
273 3ax2_A Mitochondrial import re 34.6 1E+02 0.0035 21.8 5.8 34 97-130 21-54 (73)
274 1wy6_A Hypothetical protein ST 34.3 1.9E+02 0.0065 23.6 9.9 114 40-157 22-155 (172)
275 2w2u_A Hypothetical P60 katani 29.6 53 0.0018 23.9 3.7 19 205-223 30-48 (83)
276 3lxu_X Tripeptidyl-peptidase 2 29.4 6.7E+02 0.023 28.4 15.2 82 143-226 1265-1348(1354)
277 2v6y_A AAA family ATPase, P60 27.7 60 0.002 23.6 3.7 19 205-223 22-40 (83)
278 3kae_A CDC27, possible protein 27.5 2.8E+02 0.0096 23.5 20.3 165 56-226 30-239 (242)
279 1qsa_A Protein (soluble lytic 27.1 5.2E+02 0.018 26.4 24.4 72 46-121 56-130 (618)
280 4gq2_M Nucleoporin NUP120; bet 24.2 3.9E+02 0.013 29.0 11.0 104 65-172 816-948 (950)
281 1om2_A Protein (mitochondrial 21.9 1.6E+02 0.0056 21.9 5.2 27 199-226 25-51 (95)
282 2wpv_A GET4, UPF0363 protein Y 20.7 5E+02 0.017 23.9 17.2 28 192-219 132-159 (312)
283 4gq2_M Nucleoporin NUP120; bet 20.6 7.3E+02 0.025 26.8 12.3 106 99-208 816-950 (950)
284 2v6x_A Vacuolar protein sortin 20.4 98 0.0034 22.3 3.7 19 205-223 24-42 (85)
285 3lvg_A Clathrin heavy chain 1; 20.2 6.8 0.00023 39.3 -3.6 145 57-207 197-363 (624)
286 1wfd_A Hypothetical protein 15 20.1 1E+02 0.0034 22.9 3.7 19 205-223 26-44 (93)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=1.4e-32 Score=292.33 Aligned_cols=200 Identities=12% Similarity=0.112 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhH
Q 039282 177 ELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRAR-NVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESES 255 (476)
Q Consensus 177 ~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~-~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~ 255 (476)
.+++.+|++++..+|.++++|+.|+.++...|+.+.|+ .+|++|+.. +| ....+|..|+.+++..|++++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P--------~s~~Lwl~~a~~ee~~~~~e~ 396 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IP--------NSAVLAFSLSEQYELNTKIPE 396 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHhCCHHH
Confidence 34567788999999999999999999999999988896 999999998 88 567899999999999999998
Q ss_pred H--HHHHHhCChH----------------------HHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhc-cC-
Q 039282 256 E--ALRKEFGDWV----------------------LIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVER-TK- 309 (476)
Q Consensus 256 A--~~ek~~g~~~----------------------~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~-~~- 309 (476)
| .|++...... .+..+.. .|++|+.+.|+.+.||.+|.++++. .+
T Consensus 397 aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi---------~y~~~erR~~~l~~AR~vf~~A~~~~~~~ 467 (679)
T 4e6h_A 397 IETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC---------VYMNTMKRIQGLAASRKIFGKCRRLKKLV 467 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH---------HHHHHHHHHHCHHHHHHHHHHHHHTGGGS
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Confidence 8 5665543210 1111222 7889999999999999999999988 43
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhh----------hhc-------cCchh
Q 039282 310 HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATC----------LIS-------SLSSS 372 (476)
Q Consensus 310 ~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~~~-------~~~~r 372 (476)
...+|+.++.+|...+ ++++.| |+||+++++. |++ .++||
T Consensus 468 ~~~lyi~~A~lE~~~~-------------------~d~e~A----r~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 468 TPDIYLENAYIEYHIS-------------------KDTKTA----CKVLELGLKYFATDGEYINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp CTHHHHHHHHHHHTTT-------------------SCCHHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ChHHHHHHHHHHHHhC-------------------CCHHHH----HHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHH
Confidence 6899999999998772 346778 8888888862 111 68999
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCCh
Q 039282 373 GVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPK 422 (476)
Q Consensus 373 ~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 422 (476)
.+|+||+...++. +.+..||..|+.||..+|+.+++.+|.+|+..
T Consensus 525 ~lferal~~~~~~-----~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~ 569 (679)
T 4e6h_A 525 SLFESSIDKISDS-----HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFE 569 (679)
T ss_dssp HHHHHHTTTSSST-----THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCH-----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999877631 34589999999999999999999999998654
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.98 E-value=8.7e-30 Score=266.36 Aligned_cols=325 Identities=17% Similarity=0.275 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCHHHHHH----HH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM-INKFINHARN----VW 116 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~-~~~~~~~A~~----~~ 116 (476)
.+|+..|++++..+|.+...|..|+.++...|+++.|+.+|++++..+| ++.+|..|+.+.. ..|+++.|+. +|
T Consensus 29 ~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~ 107 (530)
T 2ooe_A 29 DKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAY 107 (530)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999 7889999997554 4566665554 88
Q ss_pred HHHHHh---CCCcHHHHHHHHHHHHH---------hCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHh--------
Q 039282 117 DRAVAV---LPHVDQLWYKYIRMEEI---------AGNVAAARLIFDRWMHWTPDQ---QAWLSYIKFELRY-------- 173 (476)
Q Consensus 117 ~ral~~---~p~~~~lw~~~~~~~~~---------~g~~~~A~~~~eral~~~P~~---~~w~~~~~~~~~~-------- 173 (476)
++++.. .|.+..+|..|+.++.. .|+++.|+.+|++++. .|.. .+|..|..++...
T Consensus 108 ~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~ 186 (530)
T 2ooe_A 108 DFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKM 186 (530)
T ss_dssp HHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHH
Confidence 888765 45678889988888876 6788888999988887 4542 4565555443110
Q ss_pred -------------------------------------------------------------hh----HHHHHHHHHHHHH
Q 039282 174 -------------------------------------------------------------EQ----VELARQVFERLVQ 188 (476)
Q Consensus 174 -------------------------------------------------------------g~----~~~A~~~~~r~l~ 188 (476)
++ ..++..+|++++.
T Consensus 187 l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~ 266 (530)
T 2ooe_A 187 IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266 (530)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHH
Confidence 01 1255668888888
Q ss_pred hCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-hhcCCCCCCChhhHHHHHHHHHHHHHHccch
Q 039282 189 CHPNVVSSWIKYAKFEMR-------RGEID-------RARNVYERALE-KKLADGDGDDDEGAEQLFVAFAEFEERYKES 253 (476)
Q Consensus 189 ~~p~~~~~w~~~a~~~~~-------~g~~~-------~A~~~~e~al~-~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~ 253 (476)
.+|.++.+|+.++.++.. .|+++ +|+.+|++|+. . .| ....+|..++.++...|++
T Consensus 267 ~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~-~p--------~~~~l~~~~~~~~~~~g~~ 337 (530)
T 2ooe_A 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LK--------KNMLLYFAYADYEESRMKY 337 (530)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT-CS--------SCHHHHHHHHHHHHHTTCH
T ss_pred hCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh-Cc--------ccHHHHHHHHHHHHhcCCH
Confidence 888888999999988876 68876 88999999987 5 66 5677888888888888888
Q ss_pred hHH--HHHHHhCChHHH-HHHHH---------------------hccCCCCch----hhHHHH-HHcCCHHHHHHHHHHH
Q 039282 254 ESE--ALRKEFGDWVLI-EDAIV---------------------GKGKAPKDK----AYIHFE-KSQGERERRRALYERL 304 (476)
Q Consensus 254 e~A--~~ek~~g~~~~~-~~~i~---------------------~~~~~p~~~----~~~~~~-~~~g~~e~Ar~l~e~~ 304 (476)
++| .|++.....+.. ..+.. +...+|... ..+.++ ...|++++|+.+|+++
T Consensus 338 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~a 417 (530)
T 2ooe_A 338 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG 417 (530)
T ss_dssp HHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 887 566544322110 01111 012222211 111111 2366677777777777
Q ss_pred HhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhh
Q 039282 305 VERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYK 383 (476)
Q Consensus 305 l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~ 383 (476)
++.+| ++.+|..|+.++... |++++| |.+|++|+...+
T Consensus 418 l~~~p~~~~~~~~~~~~~~~~--------------------g~~~~A---------------------r~~~~~al~~~~ 456 (530)
T 2ooe_A 418 LKKYGDIPEYVLAYIDYLSHL--------------------NEDNNT---------------------RVLFERVLTSGS 456 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHTTT--------------------TCHHHH---------------------HHHHHHHHHSCC
T ss_pred HHHCCCCHHHHHHHHHHHHhC--------------------CCHhhH---------------------HHHHHHHHhccC
Confidence 76666 566777777776665 666677 999999998754
Q ss_pred hcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCCh
Q 039282 384 TSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPK 422 (476)
Q Consensus 384 ~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 422 (476)
.++ +.+..+|..|+.||..+|+.+++..|.++.-+
T Consensus 457 ~~~----~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 457 LPP----EKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp SCG----GGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred CCH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 331 23377999999999999999999988887433
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=2.3e-26 Score=229.88 Aligned_cols=264 Identities=13% Similarity=0.110 Sum_probs=161.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.|...|++++..+|.+...+..++.++...|++++|...+++++..+|.++.+|..++.++...|+++.|...|++++..
T Consensus 17 ~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 96 (388)
T 1w3b_A 17 AAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039282 123 LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYA 201 (476)
Q Consensus 123 ~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a 201 (476)
.|++...|..++.++...|+++.|...|++++...|+. ..|..++.++...|++++|..+|++++...|+++.+|..++
T Consensus 97 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 176 (388)
T 1w3b_A 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176 (388)
T ss_dssp CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 66666666666666666666666666666666666654 55666666666666666666666666666666666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCC
Q 039282 202 KFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAP 279 (476)
Q Consensus 202 ~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p 279 (476)
.++...|+++.|...|++++.. .| .....+...+.++...|++++| .|++.....+....+..
T Consensus 177 ~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------ 241 (388)
T 1w3b_A 177 CVFNAQGEIWLAIHHFEKAVTL-DP--------NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHG------ 241 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHH------
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHH------
Confidence 6666666666666666666666 55 3445566666666666666665 23332221111011111
Q ss_pred CchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 280 KDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 280 ~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
.++..+...|++++|...|++++...| ++.+|..++......
T Consensus 242 ---~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 284 (388)
T 1w3b_A 242 ---NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEK 284 (388)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 334445556666666666666666655 455666666555555
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=9.2e-27 Score=232.83 Aligned_cols=312 Identities=14% Similarity=0.100 Sum_probs=277.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
.+|...++.++..+|.+...|..+|..+...|++++|+..|++++..+|+++..|..++.++...|+++.|...|++++.
T Consensus 50 ~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 129 (388)
T 1w3b_A 50 DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ 129 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~ 200 (476)
..|++..+|..++.++...|+++.|...|++++...|+. ..|..++.++...|++++|...|++++...|+++.+|..+
T Consensus 130 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 209 (388)
T 1w3b_A 130 YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINL 209 (388)
T ss_dssp HCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 999999999999999999999999999999999999985 8899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCC
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKA 278 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~ 278 (476)
+..+...|++++|...|++++.. .| ....++...+..+...|+++.| .|++.....+....+..
T Consensus 210 g~~~~~~~~~~~A~~~~~~al~~-~p--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----- 275 (388)
T 1w3b_A 210 GNVLKEARIFDRAVAAYLRALSL-SP--------NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYC----- 275 (388)
T ss_dssp HHHHHTTTCTTHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh-Cc--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH-----
Confidence 99999999999999999999999 88 5677888999999999999998 45554332222122222
Q ss_pred CCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHH
Q 039282 279 PKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKI 357 (476)
Q Consensus 279 p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 357 (476)
.++..+...|++++|..+|+++++..| ++.+|..++...... |++++|
T Consensus 276 ----~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------------g~~~~A------- 324 (388)
T 1w3b_A 276 ----NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ--------------------GNIEEA------- 324 (388)
T ss_dssp ----HHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT--------------------TCHHHH-------
T ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHc--------------------CCHHHH-------
Confidence 567788899999999999999999998 899999999999888 899999
Q ss_pred hHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhC
Q 039282 358 YHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAML 420 (476)
Q Consensus 358 ~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~ 420 (476)
...|++++...+.. ...+..........|+.+.+....++.
T Consensus 325 --------------~~~~~~al~~~p~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 325 --------------VRLYRKALEVFPEF--------AAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp --------------HHHHHHHTTSCTTC--------HHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred --------------HHHHHHHHhcCCCc--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998776544 456666677777888877777666543
No 5
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.96 E-value=3.4e-27 Score=243.92 Aligned_cols=345 Identities=14% Similarity=0.153 Sum_probs=248.2
Q ss_pred cHHHHHHHHhhccCCCCCCChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHh---c
Q 039282 14 TAEQILRESQEHFGEQKSVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNE-FDRARSMWELALEE---D 89 (476)
Q Consensus 14 ~a~q~l~~a~~~~~~~~i~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~-~~~A~~~~eral~~---~ 89 (476)
+|.++...+.+.+|. +++ .+++.+|+++|...| ++.+|..|+.+....++ .+..+.+|++|+.. +
T Consensus 13 ~aR~vyer~l~~~P~---------~~~-e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d 81 (493)
T 2uy1_A 13 SPSAIMEHARRLYMS---------KDY-RSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY 81 (493)
T ss_dssp CHHHHHHHHHHHHHT---------TCH-HHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHCCC---------CCH-HHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC
Confidence 455566666655675 234 489999999999999 99999999999998774 46789999999975 7
Q ss_pred CCCHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhC-------------CHHHHHHHHH
Q 039282 90 CRNHTLWCKYAEFEM----INKFINHARNVWDRAVAVLPH-VDQLWYKYIRMEEIAG-------------NVAAARLIFD 151 (476)
Q Consensus 90 p~~~~lw~~y~~~e~----~~~~~~~A~~~~~ral~~~p~-~~~lw~~~~~~~~~~g-------------~~~~A~~~~e 151 (476)
|.++.+|..|+.++. .+++++.++.+|++|+...+. ...+|..|..++...+ .+..|+.+|+
T Consensus 82 ~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~ 161 (493)
T 2uy1_A 82 WDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQ 161 (493)
T ss_dssp TTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHH
Confidence 889999999999965 467899999999999995332 5689999999886543 2344566666
Q ss_pred HHHhcCC--CHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 152 RWMHWTP--DQQAWLSYIKFELRYE-------QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222 (476)
Q Consensus 152 ral~~~P--~~~~w~~~~~~~~~~g-------~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~ 222 (476)
.+....| +...|..|+.++...+ ...+++.+|++++..+|..+.+|+.|+.++.+.|+.+.|+.+|++|+.
T Consensus 162 ~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~ 241 (493)
T 2uy1_A 162 QIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE 241 (493)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6654433 2368999999987531 256788999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHh-C--------ChHHHHHHHHhccCCCCchhhHHHHHHcCC
Q 039282 223 KKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEF-G--------DWVLIEDAIVGKGKAPKDKAYIHFEKSQGE 293 (476)
Q Consensus 223 ~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~-g--------~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~ 293 (476)
. | ....+|..|+.+++...-+++ .+++.. + .......+.. .|++|+.+.|+
T Consensus 242 ~--P--------~~~~l~~~y~~~~e~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~lw~---------~y~~~~~r~~~ 301 (493)
T 2uy1_A 242 M--S--------DGMFLSLYYGLVMDEEAVYGD-LKRKYSMGEAESAEKVFSKELDLLRI---------NHLNYVLKKRG 301 (493)
T ss_dssp H--C--------CSSHHHHHHHHHTTCTHHHHH-HHHHTC----------CHHHHHHHHH---------HHHHHHHHHHC
T ss_pred C--C--------CcHHHHHHHHhhcchhHHHHH-HHHHHHhhccchhhhhcccccHHHHH---------HHHHHHHHcCC
Confidence 7 6 334577777766221000111 111100 0 0111122222 67788877778
Q ss_pred HHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhh-------
Q 039282 294 RERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCL------- 365 (476)
Q Consensus 294 ~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~------- 365 (476)
.++||.+|+++ ...+ ...+|+.+|.+|...+ ++++.| |.||+.++..+
T Consensus 302 ~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~-------------------~d~~~a----r~ife~al~~~~~~~~~~ 357 (493)
T 2uy1_A 302 LELFRKLFIEL-GNEGVGPHVFIYCAFIEYYAT-------------------GSRATP----YNIFSSGLLKHPDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHH-------------------CCSHHH----HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHC-------------------CChHHH----HHHHHHHHHHCCCCHHHH
Confidence 88888888888 3333 5678888888887761 235666 66666665421
Q ss_pred ---h-------ccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCChhhh
Q 039282 366 ---I-------SSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPKKLK 425 (476)
Q Consensus 366 ---~-------~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~~~ 425 (476)
+ +.+++|.+|+++. .+ ..+|..|++||..+||.+++.+|..+.-..++
T Consensus 358 ~~yid~e~~~~~~~~aR~l~er~~----k~--------~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 358 EEFFLFLLRIGDEENARALFKRLE----KT--------SRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHSC----CB--------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH----HH--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 1 1366799999972 22 68999999999999999999986665544444
No 6
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.95 E-value=6.2e-26 Score=241.25 Aligned_cols=310 Identities=12% Similarity=0.118 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCH-------
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNE---FDRARSMWELALEEDC--RNHTLWCKYAEFEMINKFI------- 109 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~---~~~A~~~~eral~~~p--~~~~lw~~y~~~e~~~~~~------- 109 (476)
..+|.+|+++|..+|.+...|..|+.++...++ ++.++.+|+||+...| .++.+|..|+.+....+++
T Consensus 83 ~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~ 162 (679)
T 4e6h_A 83 KQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEA 162 (679)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchh
Confidence 468899999999999999999999999998888 9999999999998773 6788899888877765543
Q ss_pred -HHHHHHHHHHHHh----CCCcHHHHHHHHHHHHH---------hCCHHHHH----------------------------
Q 039282 110 -NHARNVWDRAVAV----LPHVDQLWYKYIRMEEI---------AGNVAAAR---------------------------- 147 (476)
Q Consensus 110 -~~A~~~~~ral~~----~p~~~~lw~~~~~~~~~---------~g~~~~A~---------------------------- 147 (476)
+..+.+|++|+.. +|.+..+|..|+.++.. .+.++.+|
T Consensus 163 r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~ 242 (679)
T 4e6h_A 163 RNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDV 242 (679)
T ss_dssp HHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhc
Confidence 4455788888764 45567788888766431 11222333
Q ss_pred --------------------------------------------------------------------------------
Q 039282 148 -------------------------------------------------------------------------------- 147 (476)
Q Consensus 148 -------------------------------------------------------------------------------- 147 (476)
T Consensus 243 ~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~ 322 (679)
T 4e6h_A 243 NQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDD 322 (679)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHH
T ss_pred CcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccch
Confidence
Q ss_pred -------HHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 148 -------LIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELAR-QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYE 218 (476)
Q Consensus 148 -------~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~-~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e 218 (476)
.+|++++..+|.. .+|..|+.++...|+.+.|+ .+|++++..+|.+..+|+.++.++...|++++|+.+|+
T Consensus 323 ~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 323 LHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455555555542 67888888888888888996 99999999999999999999999999999999999999
Q ss_pred HHHHhhcCCC------CCCCh--------hhHHHHHHHHHHHHHHccchhHH--HHHHHhCC-hHHHHHHHHhccCCCCc
Q 039282 219 RALEKKLADG------DGDDD--------EGAEQLFVAFAEFEERYKESESE--ALRKEFGD-WVLIEDAIVGKGKAPKD 281 (476)
Q Consensus 219 ~al~~~~p~~------~~~~~--------~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~-~~~~~~~i~~~~~~p~~ 281 (476)
+++.. .+.. ..++. .....+|+.|+.++.+.|..++| .|+++... ......+..
T Consensus 403 k~l~~-l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi-------- 473 (679)
T 4e6h_A 403 SCIDR-IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL-------- 473 (679)
T ss_dssp HHHHH-HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH--------
T ss_pred HHHHH-HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH--------
Confidence 99986 4100 00010 12456899999999999998887 45554332 110011111
Q ss_pred hhhHHHHHHcCC-HHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhH
Q 039282 282 KAYIHFEKSQGE-RERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYH 359 (476)
Q Consensus 282 ~~~~~~~~~~g~-~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 359 (476)
.++.++...|+ +++||.+|+++++.+| ++.+|+.|+.|+... |+.++| |.+|+
T Consensus 474 -~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~--------------------~~~~~A----R~lfe 528 (679)
T 4e6h_A 474 -ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYV--------------------NEESQV----KSLFE 528 (679)
T ss_dssp -HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------TCHHHH----HHHHH
T ss_pred -HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC--------------------CCHHHH----HHHHH
Confidence 45566666654 8999999999999988 788999999999887 667777 77777
Q ss_pred HHHhh--------------------hhccCchhHHHHHHHHHhhhc
Q 039282 360 QFATC--------------------LISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 360 ~~~~~--------------------~~~~~~~r~ifera~~~~~~~ 385 (476)
+++.. +++.+.++.|++|+...+|++
T Consensus 529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~ 574 (679)
T 4e6h_A 529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEV 574 (679)
T ss_dssp HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTC
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 66541 122677899999999999875
No 7
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=7.9e-26 Score=219.69 Aligned_cols=240 Identities=18% Similarity=0.362 Sum_probs=214.2
Q ss_pred CCCHHHHHHHHHHHHhC----CCH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-------cCCH-------HHHH
Q 039282 56 PGDTAVWINYAKWEGSQ----NEF----DRARSMWELALEEDCRNHTLWCKYAEFEMI-------NKFI-------NHAR 113 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~----~~~----~~A~~~~eral~~~p~~~~lw~~y~~~e~~-------~~~~-------~~A~ 113 (476)
|.....|..|+.++.+. ++. ++|+.+|++++..+|.++.+|+.|+.++.. .|++ +.|+
T Consensus 5 ~~~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHH
Confidence 45678999999999886 344 799999999999999999999999999874 4885 8999
Q ss_pred HHHHHHHH-hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-H-HHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Q 039282 114 NVWDRAVA-VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-Q-AWLSYIKFELRYEQVELARQVFERLVQCH 190 (476)
Q Consensus 114 ~~~~ral~-~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~-~w~~~~~~~~~~g~~~~A~~~~~r~l~~~ 190 (476)
.+|++|+. +.|++..+|..++.++...|+++.|+.+|+++++..|.+ . +|..|+.++.+.|+++.|+.+|++++...
T Consensus 85 ~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 164 (308)
T 2ond_A 85 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 164 (308)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99999999 699999999999999999999999999999999999975 4 89999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHH
Q 039282 191 PNVVSSWIKYAKFEMR-RGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIE 269 (476)
Q Consensus 191 p~~~~~w~~~a~~~~~-~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~ 269 (476)
|.+..+|..++.++.. .|+++.|+.+|+++++. .| ....+|..++.+
T Consensus 165 p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p--------~~~~~~~~~~~~----------------------- 212 (308)
T 2ond_A 165 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YG--------DIPEYVLAYIDY----------------------- 212 (308)
T ss_dssp TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HT--------TCHHHHHHHHHH-----------------------
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CcHHHHHHHHHH-----------------------
Confidence 9989999988888765 69999999999999999 88 456677666544
Q ss_pred HHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhc---cC--CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhH
Q 039282 270 DAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVER---TK--HLKVWISYAKFEASALSKDGGNPDLSEADLCERKK 344 (476)
Q Consensus 270 ~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~---~~--~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~ 344 (476)
+...|++++|+.+|++++.. .| +..+|..++.|+...
T Consensus 213 ------------------~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~-------------------- 254 (308)
T 2ond_A 213 ------------------LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI-------------------- 254 (308)
T ss_dssp ------------------HHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH--------------------
T ss_pred ------------------HHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc--------------------
Confidence 44679999999999999996 33 568999999999988
Q ss_pred hhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcC
Q 039282 345 QSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSA 386 (476)
Q Consensus 345 ~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~ 386 (476)
|+++.| +.++.++++.+|++.
T Consensus 255 g~~~~a---------------------~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 255 GDLASI---------------------LKVEKRRFTAFREEY 275 (308)
T ss_dssp SCHHHH---------------------HHHHHHHHHHTTTTT
T ss_pred CCHHHH---------------------HHHHHHHHHHccccc
Confidence 899999 999999999988763
No 8
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3.6e-24 Score=209.80 Aligned_cols=288 Identities=7% Similarity=-0.020 Sum_probs=250.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...|..+|.++...|++++|...|++++..+|.++.+|..++.++...|+++.|...|++++.
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 99 (359)
T 3ieg_A 20 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 99 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCC---CcHHHHHHH------------HHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHH
Q 039282 122 VLP---HVDQLWYKY------------IRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFER 185 (476)
Q Consensus 122 ~~p---~~~~lw~~~------------~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r 185 (476)
..| .+...|..+ +.++...|+++.|..+|++++...|.. .+|..++.++...|++++|...|++
T Consensus 100 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 100 SNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 179 (359)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999 888888877 688889999999999999999999975 8899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHH---------HHHHHHHHHccchhHH
Q 039282 186 LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLF---------VAFAEFEERYKESESE 256 (476)
Q Consensus 186 ~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~---------~~~a~~e~~~~~~e~A 256 (476)
++...|.++.+|..++.++...|+++.|...|+++++. .| +.......+ ...+..+...|++++|
T Consensus 180 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~-----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 253 (359)
T 3ieg_A 180 ASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-DQ-----DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDA 253 (359)
T ss_dssp HHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT-----TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-Cc-----cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999 77 322211111 2236668888999888
Q ss_pred --HHHHHhC---ChHH-HHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCC
Q 039282 257 --ALRKEFG---DWVL-IEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDG 329 (476)
Q Consensus 257 --~~ek~~g---~~~~-~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~ 329 (476)
.|++... +... ...+.. .++..+...|++++|..+|+++++..| ++.+|..++......
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~---------~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 319 (359)
T 3ieg_A 254 TSKYESVMKTEPSVAEYTVRSKE---------RICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIE----- 319 (359)
T ss_dssp HHHHHHHHHHCCSSHHHHHHHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHhcCCCchHHHHHHHH---------HHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc-----
Confidence 3443322 1111 111111 456788899999999999999999999 899999999999988
Q ss_pred CCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 330 GNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
|++++| ...|+++++..|.+
T Consensus 320 ---------------g~~~~A---------------------~~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 320 ---------------EMYDEA---------------------IQDYEAAQEHNEND 339 (359)
T ss_dssp ---------------TCHHHH---------------------HHHHHHHHTTCTTC
T ss_pred ---------------CCHHHH---------------------HHHHHHHHhcCCCC
Confidence 999999 99999999887655
No 9
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=2.4e-25 Score=232.70 Aligned_cols=320 Identities=17% Similarity=0.325 Sum_probs=241.7
Q ss_pred HHHHHHHHhhccCCCC-----CCChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hCCCHHHHHH----HHHH
Q 039282 15 AEQILRESQEHFGEQK-----SVDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEG-SQNEFDRARS----MWEL 84 (476)
Q Consensus 15 a~q~l~~a~~~~~~~~-----i~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~-~~~~~~~A~~----~~er 84 (476)
|..++..+.+..|... ....+.-.....+|+..|+++|..+| ++..|+.|+.+.. ..|+++.|+. +|++
T Consensus 31 a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~ 109 (530)
T 2ooe_A 31 ARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDF 109 (530)
T ss_dssp HHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 3445666666566421 11222111223589999999999999 7889999998664 4577766655 8999
Q ss_pred HHHh---cCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHH------------
Q 039282 85 ALEE---DCRNHTLWCKYAEFEMI---------NKFINHARNVWDRAVAVLPHV--DQLWYKYIRMEE------------ 138 (476)
Q Consensus 85 al~~---~p~~~~lw~~y~~~e~~---------~~~~~~A~~~~~ral~~~p~~--~~lw~~~~~~~~------------ 138 (476)
++.. +|.+..+|..|+.++.. .|+++.|+.+|++++. .|.. ..+|..|..++.
T Consensus 110 al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~ 188 (530)
T 2ooe_A 110 ALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIE 188 (530)
T ss_dssp HHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHH
Confidence 8864 67789999999999876 7889999999999998 4643 356665554431
Q ss_pred -----------------------------------------------------Hh----CCH----HHHHHHHHHHHhcC
Q 039282 139 -----------------------------------------------------IA----GNV----AAARLIFDRWMHWT 157 (476)
Q Consensus 139 -----------------------------------------------------~~----g~~----~~A~~~~eral~~~ 157 (476)
.. ++. ..|..+|++++..+
T Consensus 189 ~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~ 268 (530)
T 2ooe_A 189 DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL 268 (530)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC
Confidence 10 111 25567899999988
Q ss_pred CCH-HHHHHHHHHHHH-------hhhHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 158 PDQ-QAWLSYIKFELR-------YEQVE-------LARQVFERLVQ-CHPNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221 (476)
Q Consensus 158 P~~-~~w~~~~~~~~~-------~g~~~-------~A~~~~~r~l~-~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al 221 (476)
|.+ .+|..|+.++.+ .|+++ +|+.+|++++. ..|+++.+|..++.++...|++++|+.+|++++
T Consensus 269 p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al 348 (530)
T 2ooe_A 269 GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLL 348 (530)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 864 899999999886 68876 89999999997 789999999999999999999999999999999
Q ss_pred HhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChH---------------------HHHHHHH-hccC
Q 039282 222 EKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWV---------------------LIEDAIV-GKGK 277 (476)
Q Consensus 222 ~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~---------------------~~~~~i~-~~~~ 277 (476)
+. .| . ....+|..|+.++.+.|+++.| .|++.....+ ....++. +...
T Consensus 349 ~~-~p-----~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 349 AI-ED-----I--DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HS-SS-----S--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred Cc-cc-----c--CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 98 66 2 2235899999999999998888 5666544321 1111110 1123
Q ss_pred CCCch----hhHHHHHHcCCHHHHHHHHHHHHhccC-C----HHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHH
Q 039282 278 APKDK----AYIHFEKSQGERERRRALYERLVERTK-H----LKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIR 348 (476)
Q Consensus 278 ~p~~~----~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~----~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (476)
+|.+. .|++++...|++++||.+|++++...| + ..+|..|+.||... |+.+
T Consensus 421 ~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~--------------------G~~~ 480 (530)
T 2ooe_A 421 YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI--------------------GDLA 480 (530)
T ss_dssp HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS--------------------SCHH
T ss_pred CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc--------------------CCHH
Confidence 45443 788999999999999999999999865 3 34999999999998 8899
Q ss_pred hhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 349 GARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 349 ~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
.+ ..++.++++.++..
T Consensus 481 ~~---------------------~~~~~r~~~~~p~~ 496 (530)
T 2ooe_A 481 SI---------------------LKVEKRRFTAFREE 496 (530)
T ss_dssp HH---------------------HHHHHHHHHHTHHH
T ss_pred HH---------------------HHHHHHHHHHCchh
Confidence 99 99999999999864
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=5.7e-24 Score=216.17 Aligned_cols=271 Identities=11% Similarity=0.003 Sum_probs=164.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 039282 45 RNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLP 124 (476)
Q Consensus 45 ~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p 124 (476)
...+..++..+|.+...|..+|..+...|++++|+.+|++++..+|.++.+|..++.++...|+++.|...|++++...|
T Consensus 12 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 91 (450)
T 2y4t_A 12 DLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM 91 (450)
T ss_dssp -----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 34556666667777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH----HHHHHH------------HHHHHHhhhHHHHHHHHHHHHH
Q 039282 125 HVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ----QAWLSY------------IKFELRYEQVELARQVFERLVQ 188 (476)
Q Consensus 125 ~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~----~~w~~~------------~~~~~~~g~~~~A~~~~~r~l~ 188 (476)
.+..+|..++.++...|+++.|+..|++++...|.. ..|..+ +..+...|++++|..+|++++.
T Consensus 92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 171 (450)
T 2y4t_A 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE 171 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777764 334333 3335666777777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChH
Q 039282 189 CHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWV 266 (476)
Q Consensus 189 ~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~ 266 (476)
..|.++.++..++.++...|++++|..+|++++.. .| .....+...+..+...|+++.| .|++.....+
T Consensus 172 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 242 (450)
T 2y4t_A 172 VCVWDAELRELRAECFIKEGEPRKAISDLKAASKL-KN--------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ 242 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH-HC--------SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 77776777777777777777777777777777776 55 3455666667777777777666 3333221111
Q ss_pred HHHHHHHh---ccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-C----HHHHHHHHHHHhhc
Q 039282 267 LIEDAIVG---KGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-H----LKVWISYAKFEASA 324 (476)
Q Consensus 267 ~~~~~i~~---~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~----~~vw~~~a~~e~~~ 324 (476)
....+... .+........+..+...|++++|..+|++++...| + ..+|..++......
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 243 DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHC
Confidence 00000000 00000000125556677777777777777777776 3 23566666666665
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=1.1e-23 Score=214.09 Aligned_cols=285 Identities=8% Similarity=-0.000 Sum_probs=250.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...|..+|.++...|+++.|...|++++..+|.++.+|..++.++...|+++.|..+|++++.
T Consensus 43 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 122 (450)
T 2y4t_A 43 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK 122 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcH---HHHHHH------------HHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHH
Q 039282 122 VLPHVD---QLWYKY------------IRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFER 185 (476)
Q Consensus 122 ~~p~~~---~lw~~~------------~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r 185 (476)
..|.+. ..|..+ +..+...|+++.|...|++++...|.. .+|..++.++...|++++|..+|++
T Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 123 SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred cCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999988 888776 444888999999999999999999975 8899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHH------------HHHHHHccch
Q 039282 186 LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAF------------AEFEERYKES 253 (476)
Q Consensus 186 ~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~------------a~~e~~~~~~ 253 (476)
++...|+++.+|..++.++...|++++|...|++++.. .| .....+..+ +..+...|++
T Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 273 (450)
T 2y4t_A 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL-DQ--------DHKRCFAHYKQVKKLNKLIESAEELIRDGRY 273 (450)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999999999999999999998 77 333344433 7778888999
Q ss_pred hHH--HHHHHhC---ChHH-HHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCC
Q 039282 254 ESE--ALRKEFG---DWVL-IEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALS 326 (476)
Q Consensus 254 e~A--~~ek~~g---~~~~-~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~ 326 (476)
+.| .|++... +.+. ...+.. .++.++...|++++|...|++++...| ++.+|..++......
T Consensus 274 ~~A~~~~~~~l~~~p~~~~~~~~~~~---------~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-- 342 (450)
T 2y4t_A 274 TDATSKYESVMKTEPSIAEYTVRSKE---------RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE-- 342 (450)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHH---------HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHH---------HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--
Confidence 888 4444322 1111 111111 567788899999999999999999998 899999999999988
Q ss_pred CCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 327 KDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
|+++.| ...|++++...+.+
T Consensus 343 ------------------~~~~~A---------------------~~~~~~al~~~p~~ 362 (450)
T 2y4t_A 343 ------------------EMYDEA---------------------IQDYETAQEHNEND 362 (450)
T ss_dssp ------------------TCHHHH---------------------HHHHHHHHTTSSSC
T ss_pred ------------------cCHHHH---------------------HHHHHHHHHhCcch
Confidence 899999 99999999876654
No 12
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=1.5e-24 Score=210.60 Aligned_cols=223 Identities=16% Similarity=0.269 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-------CCCH-------HHHHHHHHHHHH-hcCCCHHHHHHHHHHH
Q 039282 39 DYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGS-------QNEF-------DRARSMWELALE-EDCRNHTLWCKYAEFE 103 (476)
Q Consensus 39 e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~-------~~~~-------~~A~~~~eral~-~~p~~~~lw~~y~~~e 103 (476)
..+.+|+..|+++|..+|.++.+|+.+|.++.. .|++ ++|+.+|++|+. ++|++..+|..++.++
T Consensus 30 ~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 30 LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 344689999999999999999999999999874 5885 899999999999 7999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH-hhhHHHHH
Q 039282 104 MINKFINHARNVWDRAVAVLPHVDQ-LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELR-YEQVELAR 180 (476)
Q Consensus 104 ~~~~~~~~A~~~~~ral~~~p~~~~-lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~-~g~~~~A~ 180 (476)
...|+++.|+.+|++++...|.+.. +|..++.++...|+++.|+.+|+++++..|.. .+|..++.++.. .|+++.|+
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999999999876 99999999999999999999999999998875 778877777654 69999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc--CCCCCCChhhHHHHHHHHHHHHHHccchhHHHH
Q 039282 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKL--ADGDGDDDEGAEQLFVAFAEFEERYKESESEAL 258 (476)
Q Consensus 181 ~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~--p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ 258 (476)
.+|++++..+|+++.+|..++.++...|++++|+.+|++++.. + + ......+|..|+.++
T Consensus 190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~~l~------p~~~~~l~~~~~~~~----------- 251 (308)
T 2ond_A 190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-GSLP------PEKSGEIWARFLAFE----------- 251 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS-SSSC------GGGCHHHHHHHHHHH-----------
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-cCCC------HHHHHHHHHHHHHHH-----------
Confidence 9999999999999999999999999999999999999999995 3 3 123566777776554
Q ss_pred HHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC
Q 039282 259 RKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK 309 (476)
Q Consensus 259 ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~ 309 (476)
...|+++.|+.++.++++..|
T Consensus 252 ------------------------------~~~g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 252 ------------------------------SNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp ------------------------------HHHSCHHHHHHHHHHHHHHTT
T ss_pred ------------------------------HHcCCHHHHHHHHHHHHHHcc
Confidence 356888888899999988887
No 13
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.93 E-value=4.7e-24 Score=206.87 Aligned_cols=302 Identities=10% Similarity=0.026 Sum_probs=217.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 039282 49 EDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQ 128 (476)
Q Consensus 49 e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~ 128 (476)
...+...|.+...++..|..+...|+++.|..+|++++..+|.+...+..++.++...|+++.|..++++++...|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 91 (330)
T 3hym_B 12 PESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV 91 (330)
T ss_dssp --------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH
Confidence 34555567777777778887777788888888888888888888777777777777788888888888888888887778
Q ss_pred HHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039282 129 LWYKYIRMEEIAG-NVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR 206 (476)
Q Consensus 129 lw~~~~~~~~~~g-~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~ 206 (476)
+|..++.++...| +++.|...|++++...|.. .+|..++..+...|++++|...|++++...|++..+|..++..+..
T Consensus 92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 171 (330)
T 3hym_B 92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL 171 (330)
T ss_dssp HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 8888888887777 7788888888888777764 6777777777788888888888888888888777777778888888
Q ss_pred cCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCc---
Q 039282 207 RGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKD--- 281 (476)
Q Consensus 207 ~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~--- 281 (476)
.|++++|...|++++.. .| ....++..++.++...|++++| .|++.....+.. ......|..
T Consensus 172 ~~~~~~A~~~~~~al~~-~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----~~~~~~~~~~~~ 238 (330)
T 3hym_B 172 TNNSKLAERFFSQALSI-AP--------EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI----GNEVTVDKWEPL 238 (330)
T ss_dssp TTCHHHHHHHHHHHHTT-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT----SCSCTTTTCCHH
T ss_pred HhhHHHHHHHHHHHHHh-CC--------CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc----cccccccHHHHH
Confidence 88888888888888877 66 4456777777777777777777 233221100000 000000110
Q ss_pred -hhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhH
Q 039282 282 -KAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYH 359 (476)
Q Consensus 282 -~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 359 (476)
..++.++...|++++|...|+++++..| ++.+|..++...... |++++|
T Consensus 239 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~--------------------g~~~~A--------- 289 (330)
T 3hym_B 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM--------------------GNFENA--------- 289 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH--------------------TCHHHH---------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHh--------------------ccHHHH---------
Confidence 1567788899999999999999999998 889999999999988 899999
Q ss_pred HHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHH-HHHhcCCHhh
Q 039282 360 QFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLN-MERSFGELGD 412 (476)
Q Consensus 360 ~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~-fE~~~G~~~~ 412 (476)
...|++++...+.+ ...+..... ++...|+.+.
T Consensus 290 ------------~~~~~~al~~~p~~--------~~~~~~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 290 ------------VDYFHTALGLRRDD--------TFSVTMLGHCIEMYIGDSEA 323 (330)
T ss_dssp ------------HHHHHTTTTTCSCC--------HHHHHHHHHHHHTTTTC---
T ss_pred ------------HHHHHHHHccCCCc--------hHHHHHHHHHHHHHhCchhc
Confidence 99999998876654 334444443 4566777654
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=6.6e-23 Score=200.76 Aligned_cols=305 Identities=10% Similarity=-0.011 Sum_probs=254.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~ 137 (476)
++..|+.+|..+...|++++|...|++++..+|.++.+|..++.++...|+++.|...|++++...|.+..+|..++.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCC---CH-HHHHHH------------HHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039282 138 EIAGNVAAARLIFDRWMHWTP---DQ-QAWLSY------------IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYA 201 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P---~~-~~w~~~------------~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a 201 (476)
...|+++.|...|++++...| +. ..|..+ +..+...|++++|..+|++++...|+++.+|..++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 54 555555 67888999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHH---hcc
Q 039282 202 KFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIV---GKG 276 (476)
Q Consensus 202 ~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~---~~~ 276 (476)
.++...|+++.|...|++++.. .| .....+...+.++...|+++.| .|++.....+....+.. ...
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKL-KS--------DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK 232 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT-CS--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH
Confidence 9999999999999999999998 77 5667889999999999999998 34443221111111000 000
Q ss_pred CCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHH----HHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhh
Q 039282 277 KAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLK----VWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGAR 351 (476)
Q Consensus 277 ~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~----vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 351 (476)
........+..+...|++++|..+|++++...| ++. +|..++...... |++++|
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~--------------------~~~~~A- 291 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKD--------------------EKPVEA- 291 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHT--------------------TCHHHH-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHc--------------------cCHHHH-
Confidence 000000235667899999999999999999998 443 455677777777 899999
Q ss_pred hhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhC
Q 039282 352 RSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAML 420 (476)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~ 420 (476)
..+|++++...+.. ..++..........|+.+.+....++.
T Consensus 292 --------------------~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 292 --------------------IRICSEVLQMEPDN--------VNALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp --------------------HHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHhCccc--------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999886654 567777788888899988887777653
No 15
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.93 E-value=1e-24 Score=225.32 Aligned_cols=315 Identities=17% Similarity=0.208 Sum_probs=233.2
Q ss_pred hHHhhHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHH
Q 039282 34 PTELYDY-RLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKF-INH 111 (476)
Q Consensus 34 ~eel~e~-~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~-~~~ 111 (476)
.||-... -..||.+|++++...|. |++++++.+|+|++...| ++.+|..|+.+....++ .+.
T Consensus 3 ~e~~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 3 AEEKMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ---------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----C
T ss_pred hHHHcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHH
Confidence 3444432 45899999999999997 789999999999999888 89999999999998874 567
Q ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHh--------
Q 039282 112 ARNVWDRAVAV---LPHVDQLWYKYIRMEE----IAGNVAAARLIFDRWMHWTPD---QQAWLSYIKFELRY-------- 173 (476)
Q Consensus 112 A~~~~~ral~~---~p~~~~lw~~~~~~~~----~~g~~~~A~~~~eral~~~P~---~~~w~~~~~~~~~~-------- 173 (476)
.+.+|++|+.. +|.+..+|..|+.++. ..++++.++.+|++++.. |. ..+|..|..|+...
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~ 145 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKI 145 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHH
Confidence 89999999986 5778999999999965 457789999999999995 54 27899999988653
Q ss_pred -----hhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhhcCCCCCCChhhHHHHH
Q 039282 174 -----EQVELARQVFERLVQCHPN-VVSSWIKYAKFEMRRGE-------IDRARNVYERALEKKLADGDGDDDEGAEQLF 240 (476)
Q Consensus 174 -----g~~~~A~~~~~r~l~~~p~-~~~~w~~~a~~~~~~g~-------~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~ 240 (476)
+.+..|+.+|+.+....|. +...|..|+.++..++. ..+++.+|++|+.. +| ..+.+|
T Consensus 146 ~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p--------~~~~lW 216 (493)
T 2uy1_A 146 VGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FY--------YAEEVY 216 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TT--------TCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CC--------CCHHHH
Confidence 3456678888877765543 57799999999876421 45788999999999 88 568999
Q ss_pred HHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCch----hhHHHHHHcCCHHHH-HHHHHHHH--h-------
Q 039282 241 VAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDK----AYIHFEKSQGERERR-RALYERLV--E------- 306 (476)
Q Consensus 241 ~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~----~~~~~~~~~g~~e~A-r~l~e~~l--~------- 306 (476)
..|+.++.+.|++++| ...++.++.. |.+. .|+.+. +.++. ..++++.+ .
T Consensus 217 ~~ya~~~~~~~~~~~a--------r~i~erAi~~----P~~~~l~~~y~~~~----e~~~~~~~l~~~~~~~~~~~~~~~ 280 (493)
T 2uy1_A 217 FFYSEYLIGIGQKEKA--------KKVVERGIEM----SDGMFLSLYYGLVM----DEEAVYGDLKRKYSMGEAESAEKV 280 (493)
T ss_dssp HHHHHHHHHTTCHHHH--------HHHHHHHHHH----CCSSHHHHHHHHHT----TCTHHHHHHHHHTC----------
T ss_pred HHHHHHHHHcCCHHHH--------HHHHHHHHhC----CCcHHHHHHHHhhc----chhHHHHHHHHHHHhhccchhhhh
Confidence 9999999999999888 2222333322 3322 333331 11111 12222211 0
Q ss_pred ccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHH------hhhh-----------cc
Q 039282 307 RTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFA------TCLI-----------SS 368 (476)
Q Consensus 307 ~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~-----------~~ 368 (476)
..+ ...+|+.|+.|+... ++++.| |++|.++. ..|+ +.
T Consensus 281 ~~~~~~~lw~~y~~~~~r~--------------------~~~~~A----R~i~~~A~~~~~~~~v~i~~A~lE~~~~~d~ 336 (493)
T 2uy1_A 281 FSKELDLLRINHLNYVLKK--------------------RGLELF----RKLFIELGNEGVGPHVFIYCAFIEYYATGSR 336 (493)
T ss_dssp CHHHHHHHHHHHHHHHHHH--------------------HCHHHH----HHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred cccccHHHHHHHHHHHHHc--------------------CCHHHH----HHHHHHhhCCCCChHHHHHHHHHHHHHCCCh
Confidence 111 347999999999987 778888 88888872 1222 26
Q ss_pred CchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCCh
Q 039282 369 LSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNLVQAMLPK 422 (476)
Q Consensus 369 ~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 422 (476)
+.||.||++|++.+++. ..+|..|++||...|+.+.+..+..+.++
T Consensus 337 ~~ar~ife~al~~~~~~--------~~~~~~yid~e~~~~~~~~aR~l~er~~k 382 (493)
T 2uy1_A 337 ATPYNIFSSGLLKHPDS--------TLLKEEFFLFLLRIGDEENARALFKRLEK 382 (493)
T ss_dssp HHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHHTCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78999999999988654 35788899999999999999999988764
No 16
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.93 E-value=5.6e-23 Score=216.71 Aligned_cols=286 Identities=9% Similarity=-0.014 Sum_probs=257.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|+..|++++.. |.+...|..++..+...|++++|+.+|++++..+|.+..+|..++.++...|++++|..+|++++.
T Consensus 289 ~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 289 RRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp HHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4889999998887 789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~ 200 (476)
..|.+..+|..++.++...|+++.|+.+|++++...|.. ..|..++..+.+.|++++|..+|++++...|++..+|..+
T Consensus 368 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 447 (597)
T 2xpi_A 368 RHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447 (597)
T ss_dssp HCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 999999999999999999999999999999999999975 7999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCC
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKA 278 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~ 278 (476)
+..+...|++++|..+|+++++. .| .....|...+..+...|++++| .|++.....+ ..+..
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~-~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~ 511 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYAL-FQ--------YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK-------KTQSN 511 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------HSCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CC--------CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh-------ccccc
Confidence 99999999999999999999998 77 4567899999999999999999 4444321100 00222
Q ss_pred CCc-----hhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhh
Q 039282 279 PKD-----KAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARR 352 (476)
Q Consensus 279 p~~-----~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 352 (476)
|.. ..++..+...|++++|..+|+++++..| ++.+|..++..+... |++++|
T Consensus 512 p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~--------------------g~~~~A-- 569 (597)
T 2xpi_A 512 EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK--------------------KIPGLA-- 569 (597)
T ss_dssp SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT--------------------TCHHHH--
T ss_pred hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--------------------CCHHHH--
Confidence 221 0567888899999999999999999998 899999999999988 999999
Q ss_pred hhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 353 SHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
..+|+++++..+.+
T Consensus 570 -------------------~~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 570 -------------------ITHLHESLAISPNE 583 (597)
T ss_dssp -------------------HHHHHHHHHHCTTC
T ss_pred -------------------HHHHHHHHhcCCCC
Confidence 99999999887655
No 17
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.92 E-value=1.8e-23 Score=220.46 Aligned_cols=311 Identities=10% Similarity=0.079 Sum_probs=270.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH--------------------------------------HHhCCCHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKW--------------------------------------EGSQNEFDRARSMWE 83 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~--------------------------------------~~~~~~~~~A~~~~e 83 (476)
..|+..|++++..+|.+...|..++.+ +...|++++|+.+|+
T Consensus 217 ~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 296 (597)
T 2xpi_A 217 DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS 296 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 589999999999999999998887643 235688999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HH
Q 039282 84 LALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QA 162 (476)
Q Consensus 84 ral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~ 162 (476)
+++.. |.++.+|..++..+...|+++.|..+|++++...|.+..+|..++.++...|+++.|..+|++++...|.+ ..
T Consensus 297 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 375 (597)
T 2xpi_A 297 SINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVT 375 (597)
T ss_dssp TSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHH
Confidence 99987 78999999999999999999999999999999999999999999999999999999999999999999875 78
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHH
Q 039282 163 WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVA 242 (476)
Q Consensus 163 w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~ 242 (476)
|..++.++...|++++|+.+|++++...|.++.+|..++..+...|++++|..+|++++.. .| .....|..
T Consensus 376 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--------~~~~~~~~ 446 (597)
T 2xpi_A 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL-FQ--------GTHLPYLF 446 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TT--------TCSHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc--------cchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 77 45668888
Q ss_pred HHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhc------cCC--HH
Q 039282 243 FAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVER------TKH--LK 312 (476)
Q Consensus 243 ~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~------~~~--~~ 312 (476)
.+..+...|++++| .|++.....+....+.. .++..+.+.|++++|..+|+++++. .|+ ..
T Consensus 447 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 447 LGMQHMQLGNILLANEYLQSSYALFQYDPLLLN---------ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH---------HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 99999999999998 45443221111011111 5678888999999999999999988 553 78
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHH
Q 039282 313 VWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEE 392 (476)
Q Consensus 313 vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~ 392 (476)
+|..++...... |++++| ..+|++++...+.+
T Consensus 518 ~~~~l~~~~~~~--------------------g~~~~A---------------------~~~~~~~~~~~p~~------- 549 (597)
T 2xpi_A 518 TWANLGHAYRKL--------------------KMYDAA---------------------IDALNQGLLLSTND------- 549 (597)
T ss_dssp HHHHHHHHHHHT--------------------TCHHHH---------------------HHHHHHHHHHSSCC-------
T ss_pred HHHHHHHHHHHh--------------------cCHHHH---------------------HHHHHHHHHhCCCC-------
Confidence 999999999988 999999 99999999886554
Q ss_pred HHHHHHHHHHHHHhcCCHhhHHHHHhhC
Q 039282 393 RVMLLEEWLNMERSFGELGDVNLVQAML 420 (476)
Q Consensus 393 r~~l~~~~~~fE~~~G~~~~~~~v~~~~ 420 (476)
...|..........|+.+.+..+.+++
T Consensus 550 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 550 -ANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 567888888889999988887777653
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=6.6e-24 Score=209.67 Aligned_cols=287 Identities=12% Similarity=0.068 Sum_probs=242.2
Q ss_pred hhHHHHHHHH-HHHHHHHhCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 039282 37 LYDYRLHKRN-DFEDSIRRVPGDT----AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINH 111 (476)
Q Consensus 37 l~e~~~~a~~-~~e~~l~~~p~~~----~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~ 111 (476)
+.+|. +|.. .|++++...|.++ ..|+.+|..+...|++++|...|++++..+|.++.+|..++.++...|+++.
T Consensus 38 ~~~~~-~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYD-DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHH-HHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 34454 6777 8888888888764 5699999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHH----------------HHHHHHHHhh
Q 039282 112 ARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWL----------------SYIKFELRYE 174 (476)
Q Consensus 112 A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~----------------~~~~~~~~~g 174 (476)
|...|++++...|.+..+|..++.++...|+++.|...|++++...|.. ..+. .++.++ ..|
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDS 195 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcc
Confidence 9999999999999999999999999999999999999999999999975 2222 244444 899
Q ss_pred hHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccc
Q 039282 175 QVELARQVFERLVQCHPN--VVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE 252 (476)
Q Consensus 175 ~~~~A~~~~~r~l~~~p~--~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~ 252 (476)
++++|..+|++++...|+ ++.+|..++.++...|++++|...|++++.. .| ....++...+.++...|+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~--------~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-RP--------NDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-Cc--------CCHHHHHHHHHHHHHcCC
Confidence 999999999999999999 8999999999999999999999999999999 77 556789999999999999
Q ss_pred hhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-C-----------HHHHHHHH
Q 039282 253 SESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-H-----------LKVWISYA 318 (476)
Q Consensus 253 ~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~-----------~~vw~~~a 318 (476)
++.| .|++.....+....+.. .++.++...|++++|+..|++++...| + ..+|..++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~---------~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRY---------NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHH---------HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence 9998 45544322111111221 567888899999999999999999887 5 68999999
Q ss_pred HHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhh
Q 039282 319 KFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKT 384 (476)
Q Consensus 319 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~ 384 (476)
...... |+++.| ..++.+++..+..
T Consensus 338 ~~~~~~--------------------g~~~~A---------------------~~~~~~~l~~~~~ 362 (368)
T 1fch_A 338 LALSML--------------------GQSDAY---------------------GAADARDLSTLLT 362 (368)
T ss_dssp HHHHHH--------------------TCGGGH---------------------HHHHTTCHHHHHH
T ss_pred HHHHHh--------------------CChHhH---------------------HHhHHHHHHHHHH
Confidence 999988 888899 8888888776654
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.92 E-value=2.5e-23 Score=205.87 Aligned_cols=291 Identities=10% Similarity=0.006 Sum_probs=240.4
Q ss_pred HHHHHHHHHhCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 45 RNDFEDSIRRVPGDT----AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120 (476)
Q Consensus 45 ~~~~e~~l~~~p~~~----~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral 120 (476)
...+...+...|.++ ..|+.+|..+...|++++|+.+|++++..+|.++.+|..++.++...|+++.|...|++++
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 47 VSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp ------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555555554 4599999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHH----------HHHHHHHHhhhHHHHHHHHHHHHHh
Q 039282 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWL----------SYIKFELRYEQVELARQVFERLVQC 189 (476)
Q Consensus 121 ~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~----------~~~~~~~~~g~~~~A~~~~~r~l~~ 189 (476)
...|.+..+|..++.++...|+++.|+..|++++...|.. ..|. .++..+...|++++|..+|++++..
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999875 3333 3478888999999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHH
Q 039282 190 HPN--VVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVL 267 (476)
Q Consensus 190 ~p~--~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~ 267 (476)
.|+ ++.+|..++.++...|++++|...|++++.. .| ....+|..++
T Consensus 207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~~~~~l~----------------------- 254 (365)
T 4eqf_A 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV-RP--------EDYSLWNRLG----------------------- 254 (365)
T ss_dssp SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHH-----------------------
T ss_pred CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHH-----------------------
Confidence 999 8999999999999999999999999999999 77 3444444443
Q ss_pred HHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhh
Q 039282 268 IEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQS 346 (476)
Q Consensus 268 ~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (476)
..+...|++++|+..|++++...| ++.+|..++..+... |+
T Consensus 255 ------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------------------g~ 296 (365)
T 4eqf_A 255 ------------------ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL--------------------GA 296 (365)
T ss_dssp ------------------HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--------------------TC
T ss_pred ------------------HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC--------------------CC
Confidence 344578999999999999999999 799999999999988 89
Q ss_pred HHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCC----ChHHHHHHHHHHHHHHHhcCCHhhHHHHHhhCCh
Q 039282 347 IRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPE----MMEERVMLLEEWLNMERSFGELGDVNLVQAMLPK 422 (476)
Q Consensus 347 ~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~----~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 422 (476)
+++| ...|++++...+..... .......+|..........|..+.+.++.++-+.
T Consensus 297 ~~~A---------------------~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 297 YREA---------------------VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp CHHH---------------------HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHH---------------------HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 9999 99999999988764110 0011146788888888889999999999998877
Q ss_pred hhhh
Q 039282 423 KLKK 426 (476)
Q Consensus 423 ~~~~ 426 (476)
..++
T Consensus 356 ~~~~ 359 (365)
T 4eqf_A 356 VLLR 359 (365)
T ss_dssp GGTT
T ss_pred HHHH
Confidence 7654
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=7.8e-23 Score=198.23 Aligned_cols=273 Identities=11% Similarity=-0.006 Sum_probs=238.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK-FINHARNVWDRAV 120 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~-~~~~A~~~~~ral 120 (476)
..|...|++++..+|.+...+..++..+...|++++|..+|++++..+|.++.+|..++.++...| +++.|...|++++
T Consensus 39 ~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~ 118 (330)
T 3hym_B 39 KMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT 118 (330)
T ss_dssp HHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 039282 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK 199 (476)
Q Consensus 121 ~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~ 199 (476)
...|.+...|..++.++...|+++.|...|++++...|.. ..|..++..+...|++++|...|++++...|+++.+|..
T Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 198 (330)
T 3hym_B 119 TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHE 198 (330)
T ss_dssp TTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHH
Confidence 9999999999999999999999999999999999999985 788889999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCC-ChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhcc
Q 039282 200 YAKFEMRRGEIDRARNVYERALEKKLADGDGD-DDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKG 276 (476)
Q Consensus 200 ~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~-~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~ 276 (476)
++.++...|++++|...|++++.. .+..... .......++...+.++...|++++| .|++.....+....+..
T Consensus 199 l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~--- 274 (330)
T 3hym_B 199 VGVVAFQNGEWKTAEKWFLDALEK-IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYS--- 274 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHH---
T ss_pred HHHHHHHcccHHHHHHHHHHHHHH-hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHH---
Confidence 999999999999999999999998 6411100 0113456888999999999999998 34443221111111111
Q ss_pred CCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHH-hhc
Q 039282 277 KAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFE-ASA 324 (476)
Q Consensus 277 ~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e-~~~ 324 (476)
.++.++...|++++|...|+++++..| ++..|..++... ...
T Consensus 275 ------~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 318 (330)
T 3hym_B 275 ------AIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYI 318 (330)
T ss_dssp ------HHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTT
T ss_pred ------HHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHh
Confidence 567888899999999999999999999 888999998855 444
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=2.7e-22 Score=208.40 Aligned_cols=264 Identities=9% Similarity=-0.002 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.++..|..+|.++...|++++|+..|++++..+|+++.+|..++.++...|+++.|...|+ ++.
T Consensus 42 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~ 120 (537)
T 3fp2_A 42 NEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLS 120 (537)
T ss_dssp C-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHh
Confidence 4899999999999999999999999999999999999999999999999999999999999999999998888774 554
Q ss_pred hCCCcHHHH--------------------------------------------------------------------HHH
Q 039282 122 VLPHVDQLW--------------------------------------------------------------------YKY 133 (476)
Q Consensus 122 ~~p~~~~lw--------------------------------------------------------------------~~~ 133 (476)
..|.....+ ..+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 200 (537)
T 3fp2_A 121 LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDAL 200 (537)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHH
Confidence 444422211 111
Q ss_pred H--------HHHHHhCCHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Q 039282 134 I--------RMEEIAGNVAAARLIFDRWMHWTPDQ--------QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSW 197 (476)
Q Consensus 134 ~--------~~~~~~g~~~~A~~~~eral~~~P~~--------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w 197 (476)
. .+....|+++.|..+|++++...|++ .++...+.++...|++++|...|++++...|+ +.+|
T Consensus 201 ~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 279 (537)
T 3fp2_A 201 QRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSY 279 (537)
T ss_dssp HHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHH
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHH
Confidence 1 11112234555666666666666552 12444445555555666666666666666666 5566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhc
Q 039282 198 IKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGK 275 (476)
Q Consensus 198 ~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~ 275 (476)
..++..+...|+++.|...|++++.. .| ....++...+.++...|+++.| .|++.....+....+..
T Consensus 280 ~~l~~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-- 348 (537)
T 3fp2_A 280 IFLALTLADKENSQEFFKFFQKAVDL-NP--------EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYI-- 348 (537)
T ss_dssp HHHHHHTCCSSCCHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHH--
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHhcc-CC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH--
Confidence 66666666666666666666666665 55 3344555555555666666655 33333221111111111
Q ss_pred cCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcC
Q 039282 276 GKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASAL 325 (476)
Q Consensus 276 ~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~ 325 (476)
.++.++...|++++|..+|+++++..| ++.+|..++......+
T Consensus 349 -------~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 392 (537)
T 3fp2_A 349 -------QLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392 (537)
T ss_dssp -------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred -------HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence 334444555555555555555555555 4555555555555443
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.91 E-value=1.2e-22 Score=200.95 Aligned_cols=233 Identities=13% Similarity=0.049 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...|..+|.++...|++++|+..|++++..+|.++.+|..++.++...|+++.|..+|++++.
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 161 (365)
T 4eqf_A 82 PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK 161 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHH----------HHHHHHhCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039282 122 VLPHVDQLWYKY----------IRMEEIAGNVAAARLIFDRWMHWTPD---QQAWLSYIKFELRYEQVELARQVFERLVQ 188 (476)
Q Consensus 122 ~~p~~~~lw~~~----------~~~~~~~g~~~~A~~~~eral~~~P~---~~~w~~~~~~~~~~g~~~~A~~~~~r~l~ 188 (476)
..|.+...|..+ +.++...|+++.|+..|++++...|. ..+|..++.++...|++++|...|++++.
T Consensus 162 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 241 (365)
T 4eqf_A 162 QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALT 241 (365)
T ss_dssp HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999877766655 78888899999999999999999997 48899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHH
Q 039282 189 CHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLI 268 (476)
Q Consensus 189 ~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~ 268 (476)
.+|+++.+|..++..+...|++++|...|+++++. .| .....+...+
T Consensus 242 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p--------~~~~~~~~l~------------------------ 288 (365)
T 4eqf_A 242 VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QP--------GFIRSRYNLG------------------------ 288 (365)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHH------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC--------CchHHHHHHH------------------------
Confidence 99999999999999999999999999999999999 77 3444444443
Q ss_pred HHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccCC-------------HHHHHHHHHHHhhc
Q 039282 269 EDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTKH-------------LKVWISYAKFEASA 324 (476)
Q Consensus 269 ~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~-------------~~vw~~~a~~e~~~ 324 (476)
.++...|++++|+..|++++...|. ..+|..++......
T Consensus 289 -----------------~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 340 (365)
T 4eqf_A 289 -----------------ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLM 340 (365)
T ss_dssp -----------------HHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHH
T ss_pred -----------------HHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHc
Confidence 3445789999999999999988753 57899999888877
No 23
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.2e-22 Score=206.34 Aligned_cols=317 Identities=11% Similarity=0.013 Sum_probs=211.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.|...|++++..+| +...|..+|.++...|++++|+..|++++..+|.++.+|..++.++...|+++.|...|++++..
T Consensus 24 ~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 102 (514)
T 2gw1_A 24 DAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLN 102 (514)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 77778888888777 57778888888888888888888888888888888888888888888888888888888777776
Q ss_pred CCC-----------------------------------------------------------------------------
Q 039282 123 LPH----------------------------------------------------------------------------- 125 (476)
Q Consensus 123 ~p~----------------------------------------------------------------------------- 125 (476)
.|.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (514)
T 2gw1_A 103 GDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDE 182 (514)
T ss_dssp SSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCS
T ss_pred CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcC
Confidence 652
Q ss_pred --cHHHHHHHHHHHHH---hCCHHHHHHHHHHHHh-----c--CCC--------HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 039282 126 --VDQLWYKYIRMEEI---AGNVAAARLIFDRWMH-----W--TPD--------QQAWLSYIKFELRYEQVELARQVFER 185 (476)
Q Consensus 126 --~~~lw~~~~~~~~~---~g~~~~A~~~~eral~-----~--~P~--------~~~w~~~~~~~~~~g~~~~A~~~~~r 185 (476)
+...|...+..... .|+++.|+..|++++. . .|+ ..+|..++..+...|++++|..+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 262 (514)
T 2gw1_A 183 SNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKK 262 (514)
T ss_dssp SCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 15556666665554 6777777777777777 4 332 14566777777777777777777777
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhC
Q 039282 186 LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFG 263 (476)
Q Consensus 186 ~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g 263 (476)
++...|+ +.+|..++..+...|+++.|...|++++.. .| ....++...+.++...|+++.| .|++...
T Consensus 263 ~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 332 (514)
T 2gw1_A 263 AIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKL-DS--------NNSSVYYHRGQMNFILQNYDQAGKDFDKAKE 332 (514)
T ss_dssp HHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-CT--------TCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-Cc--------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7777777 777777777777777777777777777776 55 3445666677777777777776 3433321
Q ss_pred ChHHHHHHHH---------------------hccCCCCch----hhHHHHHHcCCHHHHHHHHHHHHhccC-C------H
Q 039282 264 DWVLIEDAIV---------------------GKGKAPKDK----AYIHFEKSQGERERRRALYERLVERTK-H------L 311 (476)
Q Consensus 264 ~~~~~~~~i~---------------------~~~~~p~~~----~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~------~ 311 (476)
..+....+.. .....|.+. .++..+...|++++|..+|++++...| + .
T Consensus 333 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 412 (514)
T 2gw1_A 333 LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGI 412 (514)
T ss_dssp TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCS
T ss_pred hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHH
Confidence 1111000110 001122211 445566667777777777777776655 3 2
Q ss_pred HHHHHHHHHHhh---cCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCC
Q 039282 312 KVWISYAKFEAS---ALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPE 388 (476)
Q Consensus 312 ~vw~~~a~~e~~---~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~ 388 (476)
.+|..++..... . |+++.| ...|++++...+..
T Consensus 413 ~~~~~l~~~~~~~~~~--------------------~~~~~A---------------------~~~~~~a~~~~~~~--- 448 (514)
T 2gw1_A 413 APLVGKATLLTRNPTV--------------------ENFIEA---------------------TNLLEKASKLDPRS--- 448 (514)
T ss_dssp HHHHHHHHHHHTSCCT--------------------THHHHH---------------------HHHHHHHHHHCTTC---
T ss_pred HHHHHHHHHHhhhhhc--------------------CCHHHH---------------------HHHHHHHHHhCccc---
Confidence 266666666666 5 888888 88888887765544
Q ss_pred ChHHHHHHHHHHHHHHHhcCCHhhHHHHHhh
Q 039282 389 MMEERVMLLEEWLNMERSFGELGDVNLVQAM 419 (476)
Q Consensus 389 ~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~~ 419 (476)
...+..........|+.+.+.....+
T Consensus 449 -----~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 449 -----EQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp -----HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44566666677777887666665554
No 24
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.1e-22 Score=206.36 Aligned_cols=316 Identities=9% Similarity=0.008 Sum_probs=248.8
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~ 137 (476)
....|...|..+...|++++|+..|++++..+| ++.+|..++.++...|+++.|...|++++...|.+..+|..++.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 357899999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCC----------------------------------------------------------
Q 039282 138 EIAGNVAAARLIFDRWMHWTPD---------------------------------------------------------- 159 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P~---------------------------------------------------------- 159 (476)
...|+++.|+..|++++...|.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999999988762
Q ss_pred ----------------------HHHHHHHHHHHHH---hhhHHHHHHHHHHHHH-----h--C-------CCCHHHHHHH
Q 039282 160 ----------------------QQAWLSYIKFELR---YEQVELARQVFERLVQ-----C--H-------PNVVSSWIKY 200 (476)
Q Consensus 160 ----------------------~~~w~~~~~~~~~---~g~~~~A~~~~~r~l~-----~--~-------p~~~~~w~~~ 200 (476)
...|...+..... .|++++|..+|++++. . . |.++.+|..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 2345555555554 8999999999999999 5 3 4456789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCC
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKA 278 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~ 278 (476)
+..+...|+++.|...|++++.. .| . ..++...+..+...|+++.| .|++.....+....+..
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~-~~--------~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----- 308 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIEL-FP--------R-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYY----- 308 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHH-CC--------C-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHH-----
T ss_pred HHHHHHCCCHHHHHHHHHHHHhh-Cc--------c-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHH-----
Confidence 99999999999999999999999 77 3 77889999999999999998 67776554333222332
Q ss_pred CCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHH
Q 039282 279 PKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKI 357 (476)
Q Consensus 279 p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 357 (476)
.++.++...|++++|...|++++...| ++.+|..++...... |+++.| ..+
T Consensus 309 ----~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------~~~~~A----~~~ 360 (514)
T 2gw1_A 309 ----HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRE--------------------NKFDDC----ETL 360 (514)
T ss_dssp ----HHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTT--------------------TCHHHH----HHH
T ss_pred ----HHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHc--------------------CCHHHH----HHH
Confidence 455666777888888888888887777 667777777777666 566666 555
Q ss_pred hHHHHhh-------h----------hccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHh---cCCHhhHHHHH
Q 039282 358 YHQFATC-------L----------ISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERS---FGELGDVNLVQ 417 (476)
Q Consensus 358 ~~~~~~~-------~----------~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~---~G~~~~~~~v~ 417 (476)
|.+++.. + ...+.|..+|++++...+..+.. ......+......... .|+.+.+....
T Consensus 361 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 361 FSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI--YVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp HHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC--SSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH--HHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 5554431 1 11456699999999887765210 1112355555666667 78877766655
Q ss_pred hh
Q 039282 418 AM 419 (476)
Q Consensus 418 ~~ 419 (476)
.+
T Consensus 439 ~~ 440 (514)
T 2gw1_A 439 EK 440 (514)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 25
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=4.8e-21 Score=198.94 Aligned_cols=289 Identities=13% Similarity=0.106 Sum_probs=225.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHH---------------------------------------
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMW--------------------------------------- 82 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~--------------------------------------- 82 (476)
..|...|++++..+|.+...|..+|.++...|+++.|+..|
T Consensus 76 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~ 155 (537)
T 3fp2_A 76 EKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEG 155 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 58999999999999999999999999999888877776644
Q ss_pred ----------------------------------------------------------------------HHHHHhcCCC
Q 039282 83 ----------------------------------------------------------------------ELALEEDCRN 92 (476)
Q Consensus 83 ----------------------------------------------------------------------eral~~~p~~ 92 (476)
++++..+|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~ 235 (537)
T 3fp2_A 156 RGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD 235 (537)
T ss_dssp ---CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCC
T ss_pred ccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 4444556666
Q ss_pred HHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHH
Q 039282 93 HTL-------WCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWL 164 (476)
Q Consensus 93 ~~l-------w~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~ 164 (476)
+.+ |..++.++...|+++.|...|++++...|. ...|..++.++...|+++.|...|++++...|.. .+|.
T Consensus 236 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 314 (537)
T 3fp2_A 236 DPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYY 314 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHH
Confidence 543 555566677778888888888888888888 8888888888888888888888888888888874 7788
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHH
Q 039282 165 SYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFA 244 (476)
Q Consensus 165 ~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a 244 (476)
.++.++...|++++|...|++++...|+++.+|..++.++...|++++|..+|++++.. .| ....++..++
T Consensus 315 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~--------~~~~~~~~l~ 385 (537)
T 3fp2_A 315 HRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK-FP--------TLPEVPTFFA 385 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCTHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CChHHHHHHH
Confidence 88888888888999999999988888888888888888888889999999999988888 77 4556777888
Q ss_pred HHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCC-chhhHHHHHHc----------CCHHHHHHHHHHHHhccC-C
Q 039282 245 EFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPK-DKAYIHFEKSQ----------GERERRRALYERLVERTK-H 310 (476)
Q Consensus 245 ~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~-~~~~~~~~~~~----------g~~e~Ar~l~e~~l~~~~-~ 310 (476)
.++...|+++.| .|++.....+....... ... ....+.++... |++++|...|++++...| +
T Consensus 386 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 386 EILTDRGDFDTAIKQYDIAKRLEEVQEKIHV----GIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRS 461 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHCSSCSS----TTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHHcCCcchhhHH----HHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCC
Confidence 888888888888 34332211110000000 000 00224556667 999999999999999999 8
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 311 LKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 311 ~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
+.+|..++.++... |++++| ...|++++...+..
T Consensus 462 ~~~~~~l~~~~~~~--------------------g~~~~A---------------------~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 462 EQAKIGLAQLKLQM--------------------EKIDEA---------------------IELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHHHHT--------------------TCHHHH---------------------HHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHh--------------------ccHHHH---------------------HHHHHHHHHhCCCc
Confidence 89999999999988 999999 99999999987765
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=1.1e-21 Score=189.72 Aligned_cols=266 Identities=10% Similarity=0.006 Sum_probs=149.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA 140 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~ 140 (476)
.|+..|..+...|++++|+.+|++++..+|.++.+|..++.++...|+++.|...|++++...|.+..+|..++.++...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCH-HHHHHH--------------HH-HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039282 141 GNVAAARLIFDRWMHWTPDQ-QAWLSY--------------IK-FELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFE 204 (476)
Q Consensus 141 g~~~~A~~~~eral~~~P~~-~~w~~~--------------~~-~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~ 204 (476)
|+++.|...|++++...|.. ..+..+ +. ++...|++++|..+|++++...|.++.+|..++..+
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLY 182 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 55555555555555555443 122222 22 233445555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHHHHHHHHhccCCCCch
Q 039282 205 MRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDK 282 (476)
Q Consensus 205 ~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~ 282 (476)
...|++++|...|++++.. .| .....+...+..+...|+++.| .|++.....+....+..
T Consensus 183 ~~~~~~~~A~~~~~~~~~~-~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~--------- 244 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVEL-RP--------DDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMY--------- 244 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH---------
T ss_pred HHhccHHHHHHHHHHHHHh-CC--------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH---------
Confidence 5555555555555555555 44 2334444555555555555554 22222111000000111
Q ss_pred hhHHHHHHcCCHHHHHHHHHHHHhccCC-------------HHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHh
Q 039282 283 AYIHFEKSQGERERRRALYERLVERTKH-------------LKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRG 349 (476)
Q Consensus 283 ~~~~~~~~~g~~e~Ar~l~e~~l~~~~~-------------~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (476)
.++.++...|++++|...|++++...|. ..+|..++...... |+++.
T Consensus 245 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------g~~~~ 304 (327)
T 3cv0_A 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM--------------------NRPDL 304 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT--------------------TCHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc--------------------CCHHH
Confidence 4456667899999999999999998875 67899999998888 89999
Q ss_pred hhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 350 ARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 350 A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
| ..+|++++..++..
T Consensus 305 A---------------------~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 305 V---------------------ELTYAQNVEPFAKE 319 (327)
T ss_dssp H---------------------HHHTTCCSHHHHHH
T ss_pred H---------------------HHHHHHHHHhcchh
Confidence 9 88888888877654
No 27
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.89 E-value=5.6e-22 Score=198.09 Aligned_cols=251 Identities=13% Similarity=0.070 Sum_probs=218.6
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHH
Q 039282 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKF-INHARNVWDRAVAVLPHVDQL 129 (476)
Q Consensus 51 ~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~-~~~A~~~~~ral~~~p~~~~l 129 (476)
+|..+|.+..+|..++.++...|++++|+..|+++|.++|.+..+|...+.++...|+ ++.|...|++++.+.|++..+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a 168 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQV 168 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHH
Confidence 3567788899999999999999999999999999999999999999999999999997 999999999999999999999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-c
Q 039282 130 WYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR-R 207 (476)
Q Consensus 130 w~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~-~ 207 (476)
|+.++.++...|+++.|+..|++++..+|.+ .+|..++.++...|++++|...|++++..+|++..+|..++.++.. .
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~ 248 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT 248 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999986 8999999999999999999999999999999999999999999999 5
Q ss_pred CCHHHH-----HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHcc--chhHH--HHHHHhCChHHHHHHHHhccCC
Q 039282 208 GEIDRA-----RNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYK--ESESE--ALRKEFGDWVLIEDAIVGKGKA 278 (476)
Q Consensus 208 g~~~~A-----~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~--~~e~A--~~ek~~g~~~~~~~~i~~~~~~ 278 (476)
|..++| ...|+++|.. .| .+...|...+.++...| ++++| .+++. ...
T Consensus 249 ~~~~eA~~~~el~~~~~Al~l-~P--------~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--------------~~~ 305 (382)
T 2h6f_A 249 GYNDRAVLEREVQYTLEMIKL-VP--------HNESAWNYLKGILQDRGLSKYPNLLNQLLDL--------------QPS 305 (382)
T ss_dssp CSCSHHHHHHHHHHHHHHHHH-ST--------TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--------------TTT
T ss_pred CcchHHHHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHHccCccchHHHHHHHHHh--------------ccC
Confidence 665777 5999999999 88 56678888888877776 56666 11111 223
Q ss_pred CCch----hhHHHHHHcC--------C-HHHHHHHHHHH-HhccC-CHHHHHHHHHHHhhc
Q 039282 279 PKDK----AYIHFEKSQG--------E-RERRRALYERL-VERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 279 p~~~----~~~~~~~~~g--------~-~e~Ar~l~e~~-l~~~~-~~~vw~~~a~~e~~~ 324 (476)
|.+. .+++++...| + +++|..+|+++ ++..| ....|..++......
T Consensus 306 p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 306 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3322 5667777764 3 58999999999 99999 889999888765543
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=3.7e-21 Score=189.90 Aligned_cols=247 Identities=13% Similarity=0.027 Sum_probs=219.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...|..+|.++...|++++|+..|++++..+|.++.+|..++.++...|+++.|...|++++.
T Consensus 81 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 81 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHH----------------HHHHHHHHhCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHhhhHHHHHHH
Q 039282 122 VLPHVDQLWY----------------KYIRMEEIAGNVAAARLIFDRWMHWTPD---QQAWLSYIKFELRYEQVELARQV 182 (476)
Q Consensus 122 ~~p~~~~lw~----------------~~~~~~~~~g~~~~A~~~~eral~~~P~---~~~w~~~~~~~~~~g~~~~A~~~ 182 (476)
..|.+...+. .++.++ ..|+++.|+..|++++...|. ..+|..++.++...|++++|...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp TSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999877765 344555 889999999999999999998 48899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHH
Q 039282 183 FERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRK 260 (476)
Q Consensus 183 ~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek 260 (476)
|++++...|+++.+|..++.++...|++++|...|++++.. .| .....+...+.++...|+++.| .|++
T Consensus 240 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 310 (368)
T 1fch_A 240 FTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QP--------GYIRSRYNLGISCINLGAHREAVEHFLE 310 (368)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 77 5667899999999999999998 4554
Q ss_pred HhCChHHH-----------HHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhc
Q 039282 261 EFGDWVLI-----------EDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVER 307 (476)
Q Consensus 261 ~~g~~~~~-----------~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~ 307 (476)
.....+.. ..+.. .++..+...|+++.|..++.+++..
T Consensus 311 al~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 311 ALNMQRKSRGPRGEGGAMSENIWS---------TLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHTC------CCCCCHHHHH---------HHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHhCCCCCCccccccchhhHHHH---------HHHHHHHHhCChHhHHHhHHHHHHH
Confidence 43222111 11221 6778888999999999999987765
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=4.1e-21 Score=185.80 Aligned_cols=250 Identities=14% Similarity=0.068 Sum_probs=217.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...|..+|.++...|++++|...|++++..+|.++.+|..++.++...|+++.|...|++++.
T Consensus 38 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 117 (327)
T 3cv0_A 38 AEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLL 117 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHH--------------HH-HHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHH
Q 039282 122 VLPHVDQLWYKY--------------IR-MEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFER 185 (476)
Q Consensus 122 ~~p~~~~lw~~~--------------~~-~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r 185 (476)
..|.+..++..+ +. ++...|+++.|...|++++...|.. .+|..++..+...|++++|...|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 197 (327)
T 3cv0_A 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRR 197 (327)
T ss_dssp TSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999988887776 55 4667789999999999999999975 8899999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhC
Q 039282 186 LVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFG 263 (476)
Q Consensus 186 ~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g 263 (476)
++...|+++.+|..++..+...|++++|...|++++.. .| .....+...+.++...|+++.| .|++...
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 268 (327)
T 3cv0_A 198 AVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDI-NP--------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIY 268 (327)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC--------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 77 5567888999999999999998 4554432
Q ss_pred ChHH------------HHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC
Q 039282 264 DWVL------------IEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK 309 (476)
Q Consensus 264 ~~~~------------~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~ 309 (476)
..+. ...+.. .++..+...|+++.|..++++++...|
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 269 MQVGGTTPTGEASREATRSMWD---------FFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHTTSCC-----CCTHHHHHHH---------HHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred hCCccccccccchhhcCHHHHH---------HHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 2222 222222 567788899999999999998876654
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=8e-21 Score=174.69 Aligned_cols=191 Identities=15% Similarity=0.070 Sum_probs=167.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIR 135 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~ 135 (476)
|.+...|..+|..+...|++++|+..|++++..+|.++.+|..++.++...|+++.|...|++++...|++...|..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHh-----------CCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039282 136 MEEIA-----------GNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKF 203 (476)
Q Consensus 136 ~~~~~-----------g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~ 203 (476)
++... |+++.|+..|+++++.+|+. .+|..++.++...|++++|+..|++++... +++.+|..++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~ 160 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHH
Confidence 99999 99999999999999999975 789999999999999999999999999998 889999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH
Q 039282 204 EMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 204 ~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
+...|++++|...|+++++. .| ....++..++.++...|++++|
T Consensus 161 ~~~~g~~~~A~~~~~~al~~-~P--------~~~~~~~~la~~~~~~g~~~~A 204 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ-AP--------KDLDLRVRYASALLLKGKAEEA 204 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH-ST--------TCHHHHHHHHHHHTC-------
T ss_pred HHHcCCHHHHHHHHHHHHHh-CC--------CChHHHHHHHHHHHHccCHHHH
Confidence 99999999999999999998 88 5667888888888888888887
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.86 E-value=3.1e-20 Score=170.70 Aligned_cols=180 Identities=13% Similarity=0.094 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-----------CCHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMIN-----------KFIN 110 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~-----------~~~~ 110 (476)
..|...|++++..+|.+...|..+|.++...|++++|+..|++++..+|+++.+|..++.++... |+++
T Consensus 22 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~ 101 (217)
T 2pl2_A 22 DAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLE 101 (217)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Q 039282 111 HARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCH 190 (476)
Q Consensus 111 ~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~ 190 (476)
.|...|++++...|++..+|..++.++...|++++|+..|+++++.+....+|..++..+...|++++|+..|++++...
T Consensus 102 ~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 181 (217)
T 2pl2_A 102 QALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQA 181 (217)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999445899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 191 PNVVSSWIKYAKFEMRRGEIDRARNVYERAL 221 (476)
Q Consensus 191 p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al 221 (476)
|+++.++..++.++...|++++|...|+++-
T Consensus 182 P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 182 PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp TTCHHHHHHHHHHHTC---------------
T ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999998864
No 32
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.86 E-value=6.7e-20 Score=173.05 Aligned_cols=247 Identities=9% Similarity=-0.000 Sum_probs=156.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----HHHHHHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV----DQLWYKYI 134 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~----~~lw~~~~ 134 (476)
...++.+|..+...|++++|+.+|++++..+|.++.+|..++.++...|+++.|...|++++. .|.+ ...|..++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 345666677777777777777777777777777766777777777777777777777777776 3322 33466677
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 039282 135 RMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRA 213 (476)
Q Consensus 135 ~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A 213 (476)
.++...|+++.|...|++++...|.. .+|..++.++...|++++|...|++++...|.++.+|..++......+++++|
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777766654 66666777777777777777777777777776677777766333344577777
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccc---hhHH--HHHHHhC------Ch--HHHHHHHHhccCCCC
Q 039282 214 RNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE---SESE--ALRKEFG------DW--VLIEDAIVGKGKAPK 280 (476)
Q Consensus 214 ~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~---~e~A--~~ek~~g------~~--~~~~~~i~~~~~~p~ 280 (476)
...|+++++. .| .....+...+..+...|+ ++.| .|++... +. .....+..
T Consensus 162 ~~~~~~a~~~-~p--------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~------- 225 (272)
T 3u4t_A 162 DSSFVKVLEL-KP--------NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANE------- 225 (272)
T ss_dssp HHHHHHHHHH-ST--------TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHH-------
T ss_pred HHHHHHHHHh-Cc--------cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHH-------
Confidence 7777777776 55 334455555555555555 4444 2322211 10 00111222
Q ss_pred chhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 281 DKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 281 ~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
.++.++...|++++|+..|+++++..| ++..|.....+....
T Consensus 226 --~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 226 --YIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred --HHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 466788899999999999999999999 788888777665543
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.85 E-value=4.3e-19 Score=165.40 Aligned_cols=227 Identities=11% Similarity=0.014 Sum_probs=204.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV-------DQLW 130 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~-------~~lw 130 (476)
....|..+|..+...|++++|..+|++++..+ .++.+|..++.++...|+++.|...|++++...|.+ ..+|
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 999999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 039282 131 YKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEI 210 (476)
Q Consensus 131 ~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~ 210 (476)
..++.++...|+++.|...|++++...|.. ..+...|++++|...+++++...|.++.+|..++.++...|++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDW 155 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999984 3466778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHH
Q 039282 211 DRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKS 290 (476)
Q Consensus 211 ~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~ 290 (476)
++|...|++++.. .| ....++...+ ..+..
T Consensus 156 ~~A~~~~~~a~~~-~~--------~~~~~~~~l~-----------------------------------------~~~~~ 185 (258)
T 3uq3_A 156 PNAVKAYTEMIKR-AP--------EDARGYSNRA-----------------------------------------AALAK 185 (258)
T ss_dssp HHHHHHHHHHHHH-CT--------TCHHHHHHHH-----------------------------------------HHHHH
T ss_pred HHHHHHHHHHHhc-Cc--------ccHHHHHHHH-----------------------------------------HHHHH
Confidence 9999999999999 77 3334443333 33447
Q ss_pred cCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccC
Q 039282 291 QGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSL 369 (476)
Q Consensus 291 ~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 369 (476)
.|++++|...|++++...| ++.+|..++...... |++++|
T Consensus 186 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~--------------------g~~~~A------------------- 226 (258)
T 3uq3_A 186 LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV--------------------KEYASA------------------- 226 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT--------------------TCHHHH-------------------
T ss_pred hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--------------------hhHHHH-------------------
Confidence 8999999999999999998 789999999999888 899999
Q ss_pred chhHHHHHHHHHhh
Q 039282 370 SSSGVFEKGINYYK 383 (476)
Q Consensus 370 ~~r~ifera~~~~~ 383 (476)
...|+++++..+
T Consensus 227 --~~~~~~a~~~~~ 238 (258)
T 3uq3_A 227 --LETLDAARTKDA 238 (258)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHhCh
Confidence 999999998874
No 34
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=3.9e-19 Score=158.11 Aligned_cols=169 Identities=16% Similarity=0.156 Sum_probs=163.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 039282 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRM 136 (476)
Q Consensus 57 ~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~ 136 (476)
.+..+|+.+|..+...|++++|+..|++++.++|+++.+|..++.++...|+++.|...+.+++...|.+..+|..++.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039282 137 EEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARN 215 (476)
Q Consensus 137 ~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~ 215 (476)
+...++++.|...+.+++...|.+ .+|..++..+...|++++|...|++++..+|+++.+|..+|.++...|++++|..
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999985 8899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC
Q 039282 216 VYERALEKKLA 226 (476)
Q Consensus 216 ~~e~al~~~~p 226 (476)
.|++|++. .|
T Consensus 163 ~~~~al~~-~p 172 (184)
T 3vtx_A 163 YFKKALEK-EE 172 (184)
T ss_dssp HHHHHHHT-TH
T ss_pred HHHHHHhC-Cc
Confidence 99999998 66
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.83 E-value=4.9e-19 Score=163.81 Aligned_cols=197 Identities=15% Similarity=0.179 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...|..+|.++...|++++|...|++++..+|.+..+|..++.++...|+++.|...|++++.
T Consensus 40 ~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 40 EKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp --CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 48889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKY 200 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~ 200 (476)
..|.+..+|..++.++...|+++.|...|++++...|.. .+|..++..+...|++++|...|++++...|+++.+|..+
T Consensus 120 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 199 (243)
T 2q7f_A 120 AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199 (243)
T ss_dssp HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 999999999999999999999999999999999999974 8899999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHH
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFE 247 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e 247 (476)
+.++...|++++|...|+++++. .| .....+..++.+.
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~-~p--------~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDI-QP--------DHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHH-CT--------TCHHHHHHHTC--
T ss_pred HHHHHHccCHHHHHHHHHHHHcc-Cc--------chHHHHHHHHHHH
Confidence 99999999999999999999999 88 4555555555443
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=9.6e-19 Score=178.92 Aligned_cols=334 Identities=10% Similarity=0.004 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRR---------VPGDTAVWINYAKWEGSQNEFDRARSMWELALEED--------CRNHTLWCKYAEFEM 104 (476)
Q Consensus 42 ~~a~~~~e~~l~~---------~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~--------p~~~~lw~~y~~~e~ 104 (476)
..|.+.|++++.. +|.....|..+|.++...|++++|...|++++.+. +..+.++...+..+.
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~ 147 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL 147 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHH
Confidence 4788888888765 67788899999999999999999999999999863 345777877776655
Q ss_pred H--cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH----HHhh
Q 039282 105 I--NKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEI---AGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFE----LRYE 174 (476)
Q Consensus 105 ~--~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~---~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~----~~~g 174 (476)
. .++++.|...|++++...|+++.++..++.+... .+..+.|...|+++++.+|+. .++..++..+ ...|
T Consensus 148 ~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~ 227 (472)
T 4g1t_A 148 KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGE 227 (472)
T ss_dssp HHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC----
T ss_pred HHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhh
Confidence 5 4579999999999999999999999999887544 466788999999999999985 5555554433 3457
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchh
Q 039282 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESE 254 (476)
Q Consensus 175 ~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e 254 (476)
+++.|..+|++++...|.++.++..+|.++...|+++.|...|+++++. .| ....++...+..+...+...
T Consensus 228 ~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~p--------~~~~~~~~lg~~y~~~~~~~ 298 (472)
T 4g1t_A 228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY-IP--------NNAYLHCQIGCCYRAKVFQV 298 (472)
T ss_dssp --CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST--------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh-CC--------ChHHHHHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999999999999999999 88 45556666665544332221
Q ss_pred HHH-------HHHHhCC----hHHHHHHHHhccCCCCc----hhhHHHHHHcCCHHHHHHHHHHHHhccCCH----HHHH
Q 039282 255 SEA-------LRKEFGD----WVLIEDAIVGKGKAPKD----KAYIHFEKSQGERERRRALYERLVERTKHL----KVWI 315 (476)
Q Consensus 255 ~A~-------~ek~~g~----~~~~~~~i~~~~~~p~~----~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~----~vw~ 315 (476)
.+. ..+..+. ...+..++ .+.|.. ..++..+...|++++|...|++++...++. .++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~---~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~ 375 (472)
T 4g1t_A 299 MNLRENGMYGKRKLLELIGHAVAHLKKAD---EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHL 375 (472)
T ss_dssp HHC------CHHHHHHHHHHHHHHHHHHH---HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHh---hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 110 0000000 00111111 122222 266788889999999999999999988732 3566
Q ss_pred HHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhc-------cCchhHHHHHHHHHhhhcCCC
Q 039282 316 SYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLIS-------SLSSSGVFEKGINYYKTSAPE 388 (476)
Q Consensus 316 ~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~r~ifera~~~~~~~~~~ 388 (476)
.++.+.... .+++++| ...|.+++...-+ ......++++++...|..
T Consensus 376 ~~~~~~~~~-------------------~~~~~~A----i~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~--- 429 (472)
T 4g1t_A 376 RYGNFQLYQ-------------------MKCEDKA----IHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGAD--- 429 (472)
T ss_dssp HHHHHHHHT-------------------SSCHHHH----HHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-C---
T ss_pred HHHHHHHHH-------------------CCCHHHH----HHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCC---
Confidence 676654432 1678888 5555555542111 233344555555444333
Q ss_pred ChHHHHHHHHHHHHHHHhcCCHhhHHHHHh
Q 039282 389 MMEERVMLLEEWLNMERSFGELGDVNLVQA 418 (476)
Q Consensus 389 ~~~~r~~l~~~~~~fE~~~G~~~~~~~v~~ 418 (476)
...|..........|+.+.+....+
T Consensus 430 -----~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 430 -----SEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp -----TTHHHHHHHHHHHHHHCC-------
T ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2234444444445555544444433
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.83 E-value=5.1e-19 Score=163.72 Aligned_cols=217 Identities=12% Similarity=0.159 Sum_probs=176.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~ 137 (476)
....|+.+|..+...|++++|...|++++..+|.++.+|..++.++...|+++.|...|++++...|.+..+|..++.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039282 138 EIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNV 216 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~ 216 (476)
...|+++.|...|++++...|.. .+|..++.++...|++++|...|++++...|+++.+|..++..+...|+++.|...
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999865 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHH
Q 039282 217 YERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERER 296 (476)
Q Consensus 217 ~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~ 296 (476)
|++++.. .| ....++..++ .++...|++++
T Consensus 182 ~~~~~~~-~~--------~~~~~~~~la-----------------------------------------~~~~~~~~~~~ 211 (243)
T 2q7f_A 182 FAAVTEQ-DP--------GHADAFYNAG-----------------------------------------VTYAYKENREK 211 (243)
T ss_dssp HHHHHHH-CT--------TCHHHHHHHH-----------------------------------------HHHHHTTCTTH
T ss_pred HHHHHHh-Cc--------ccHHHHHHHH-----------------------------------------HHHHHccCHHH
Confidence 9999998 77 3333443333 44457899999
Q ss_pred HHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 297 RRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 297 Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
|...|+++++..| +..+|..++.+....
T Consensus 212 A~~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 212 ALEMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 9999999999999 788888887766544
No 38
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.83 E-value=9.4e-19 Score=178.98 Aligned_cols=278 Identities=10% Similarity=0.073 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEG---SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI----NKFINHARN 114 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~---~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~----~~~~~~A~~ 114 (476)
.+|...|++++..+|.++..+..++.+.. ..++.++|...|++++.++|.++.++..++..... .++++.|..
T Consensus 155 ~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~ 234 (472)
T 4g1t_A 155 ERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEK 234 (472)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 48999999999999999999999988754 35777889999999999999999999888766544 467889999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH-------------------hh
Q 039282 115 VWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELR-------------------YE 174 (476)
Q Consensus 115 ~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~-------------------~g 174 (476)
+|++++...|.+..+|..++.++...|+++.|...|+++++..|++ .++..++..+.. .+
T Consensus 235 ~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~ 314 (472)
T 4g1t_A 235 LVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLE 314 (472)
T ss_dssp HHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHH
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999985 566666554432 24
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHH-HHccch
Q 039282 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFE-ERYKES 253 (476)
Q Consensus 175 ~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e-~~~~~~ 253 (476)
.++.|...|++++..+|.++.++..++..+...|++++|...|+++++. .+ ++.....++..++.+. ...|++
T Consensus 315 ~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~ 388 (472)
T 4g1t_A 315 LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-EL-----TPVAKQLLHLRYGNFQLYQMKCE 388 (472)
T ss_dssp HHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-CC-----CHHHHHHHHHHHHHHHHHTSSCH
T ss_pred hHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-CC-----CChHHHHHHHHHHHHHHHHCCCH
Confidence 5788999999999999999999999999999999999999999999998 66 5444456677777654 356777
Q ss_pred hHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCC
Q 039282 254 ESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGG 330 (476)
Q Consensus 254 e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~ 330 (476)
++| .|++ ++ .+.|... ...+....+..++++++..+| ++..|..++.++...
T Consensus 389 ~~Ai~~y~k----------al---~i~~~~~------~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~------ 443 (472)
T 4g1t_A 389 DKAIHHFIE----------GV---KINQKSR------EKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELN------ 443 (472)
T ss_dssp HHHHHHHHH----------HH---HSCCCCH------HHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHH------
T ss_pred HHHHHHHHH----------HH---hcCcccH------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------
Confidence 777 2332 22 1333321 122344567788889999998 788999999988887
Q ss_pred CCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 331 NPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
|++++| ...|++|++.-+..
T Consensus 444 --------------g~~~~A---------------------~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 444 --------------EKMQQA---------------------DEDSERGLESGSLI 463 (472)
T ss_dssp --------------HHCC-------------------------------------
T ss_pred --------------CCHHHH---------------------HHHHHHHHhcCCCC
Confidence 899999 99999999865544
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.83 E-value=3.1e-18 Score=159.80 Aligned_cols=212 Identities=14% Similarity=0.061 Sum_probs=188.3
Q ss_pred HhCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 039282 53 RRVPGD-TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWY 131 (476)
Q Consensus 53 ~~~p~~-~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~ 131 (476)
..+|.+ ...|..+|..+...|++++|+.+|++++..+|.++.+|..++.++...|+++.|..+|++++...|.+..+|.
T Consensus 30 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 30 DKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 345665 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHh--cCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 039282 132 KYIRMEEIAGNVAAARLIFDRWMH--WTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRG 208 (476)
Q Consensus 132 ~~~~~~~~~g~~~~A~~~~eral~--~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g 208 (476)
.++.++...|+++.|+..|++++. ..|.. .+|..++..+...|++++|...|++++...|.++.+|..++.++...|
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 999999999999999999999999 77765 788999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHH
Q 039282 209 EIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFE 288 (476)
Q Consensus 209 ~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~ 288 (476)
++++|...|++++.. .| .....+... +.++
T Consensus 190 ~~~~A~~~~~~~~~~-~~--------~~~~~~~~~-----------------------------------------~~~~ 219 (252)
T 2ho1_A 190 EYVPARQYYDLFAQG-GG--------QNARSLLLG-----------------------------------------IRLA 219 (252)
T ss_dssp CHHHHHHHHHHHHTT-SC--------CCHHHHHHH-----------------------------------------HHHH
T ss_pred CHHHHHHHHHHHHHh-Cc--------CcHHHHHHH-----------------------------------------HHHH
Confidence 999999999999998 77 233333322 2334
Q ss_pred HHcCCHHHHHHHHHHHHhccC-CHHHH
Q 039282 289 KSQGERERRRALYERLVERTK-HLKVW 314 (476)
Q Consensus 289 ~~~g~~e~Ar~l~e~~l~~~~-~~~vw 314 (476)
...|++++|+.+|++++...| ++.++
T Consensus 220 ~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 220 KVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 478999999999999999988 55443
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.83 E-value=5.3e-19 Score=176.51 Aligned_cols=200 Identities=11% Similarity=0.031 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNE-FDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~-~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral 120 (476)
.+|...|+++|..+|.+..+|..+|.++...|+ +++|+..|++++.++|++..+|..++.++...|+++.|...|++++
T Consensus 114 ~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal 193 (382)
T 2h6f_A 114 ERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADIL 193 (382)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 589999999999999999999999999999996 9999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH-hhhHHHH-----HHHHHHHHHhCCCC
Q 039282 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELR-YEQVELA-----RQVFERLVQCHPNV 193 (476)
Q Consensus 121 ~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~-~g~~~~A-----~~~~~r~l~~~p~~ 193 (476)
.+.|++..+|+.++.++...|+++.|+..|++++..+|++ .+|..++.++.. .|..++| ...|++++..+|++
T Consensus 194 ~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~ 273 (382)
T 2h6f_A 194 NQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN 273 (382)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC
T ss_pred HhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999999999999999999999986 899999999988 5554777 59999999999999
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHcc
Q 039282 194 VSSWIKYAKFEMRRG--EIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYK 251 (476)
Q Consensus 194 ~~~w~~~a~~~~~~g--~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~ 251 (476)
..+|..++.++...| ++++|...+.++ +. .| ....++..++.++...|
T Consensus 274 ~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p--------~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 274 ESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SH--------SSPYLIAFLVDIYEDML 323 (382)
T ss_dssp HHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TC--------CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CC--------CCHHHHHHHHHHHHHHh
Confidence 999999999999888 689999999887 65 56 45667777777777664
No 41
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.82 E-value=7.1e-18 Score=168.06 Aligned_cols=300 Identities=9% Similarity=-0.003 Sum_probs=239.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH----TLWCKYAEFEMINKFINHARNVWDRAVAVL------PH 125 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~----~lw~~y~~~e~~~~~~~~A~~~~~ral~~~------p~ 125 (476)
+.....|...|..+...|++++|+..|++++...|.++ .+|..++.++...|+++.|...|++++... |.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34567888999999999999999999999999999984 678899999999999999999999998773 34
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhhh--------------------HHH
Q 039282 126 VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-------QAWLSYIKFELRYEQ--------------------VEL 178 (476)
Q Consensus 126 ~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-------~~w~~~~~~~~~~g~--------------------~~~ 178 (476)
...+|..++.++...|+++.|...|.+++...|.. .++..++.++...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 56788999999999999999999999999876642 478888899999999 999
Q ss_pred HHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccc
Q 039282 179 ARQVFERLVQC------HPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE 252 (476)
Q Consensus 179 A~~~~~r~l~~------~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~ 252 (476)
|...|++++.. .|....++..++.++...|+++.|...|++++.. .+.. .+.......+...+..+...|+
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~--~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI-AKEF--GDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH-HHHT--TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-HHhc--CCcHHHHHHHHHHHHHHHHcCC
Confidence 99999999876 2333567889999999999999999999999987 5400 0222334578888888999999
Q ss_pred hhHH--HHHHHh------CChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-C------HHHHHHH
Q 039282 253 SESE--ALRKEF------GDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-H------LKVWISY 317 (476)
Q Consensus 253 ~e~A--~~ek~~------g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~------~~vw~~~ 317 (476)
+++| .|++.. ++......+.. .++.++...|++++|...|++++...+ . ..+|..+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 313 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCY---------SLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSL 313 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHH---------HHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 9988 344332 33332233332 567888899999999999999998754 2 5688888
Q ss_pred HHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHH
Q 039282 318 AKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLL 397 (476)
Q Consensus 318 a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~ 397 (476)
+.++... |++++| ...|++++...+.. +........+
T Consensus 314 a~~~~~~--------------------g~~~~A---------------------~~~~~~al~~~~~~--~~~~~~~~~~ 350 (406)
T 3sf4_A 314 GNAYTAL--------------------GNHDQA---------------------MHFAEKHLEISREV--GDKSGELTAR 350 (406)
T ss_dssp HHHHHHH--------------------TCHHHH---------------------HHHHHHHHHHHHHT--TCHHHHHHHH
T ss_pred HHHHHHc--------------------CCHHHH---------------------HHHHHHHHHHHHHh--cCCcchhHHH
Confidence 8888887 899999 99999999988776 4445566777
Q ss_pred HHHHHHHHhcCCH
Q 039282 398 EEWLNMERSFGEL 410 (476)
Q Consensus 398 ~~~~~fE~~~G~~ 410 (476)
..........|+.
T Consensus 351 ~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 351 LNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHh
Confidence 7777777777765
No 42
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.9e-18 Score=158.89 Aligned_cols=218 Identities=10% Similarity=-0.001 Sum_probs=193.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN-------HTLWCKYAEFEMINKFINHARN 114 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~-------~~lw~~y~~~e~~~~~~~~A~~ 114 (476)
..|...|++++..+ .+..+|..+|.++...|++++|...|++++..+|.+ +.+|..++.++...|+++.|..
T Consensus 22 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 100 (258)
T 3uq3_A 22 DEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIE 100 (258)
T ss_dssp HHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 48999999999999 899999999999999999999999999999999887 7999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Q 039282 115 VWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNV 193 (476)
Q Consensus 115 ~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~ 193 (476)
.|++++...|. +.++...|+++.|...|++++...|.. .+|..++..+...|++++|...|++++...|++
T Consensus 101 ~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 172 (258)
T 3uq3_A 101 YYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172 (258)
T ss_dssp HHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc
Confidence 99999999987 344556688999999999999999876 789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHH
Q 039282 194 VSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIV 273 (476)
Q Consensus 194 ~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~ 273 (476)
+.+|..++..+...|++++|...|+++++. .| .....+...+
T Consensus 173 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~--------~~~~~~~~l~----------------------------- 214 (258)
T 3uq3_A 173 ARGYSNRAAALAKLMSFPEAIADCNKAIEK-DP--------NFVRAYIRKA----------------------------- 214 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CH--------HHHHHHHHHH-----------------------------
Confidence 999999999999999999999999999999 77 3444444433
Q ss_pred hccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhcc------C-CHHHHHHHH
Q 039282 274 GKGKAPKDKAYIHFEKSQGERERRRALYERLVERT------K-HLKVWISYA 318 (476)
Q Consensus 274 ~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~------~-~~~vw~~~a 318 (476)
.++...|++++|...|+++++.. | +..++..+.
T Consensus 215 ------------~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 215 ------------TAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp ------------HHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred ------------HHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 33446788999999999999888 6 455555544
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.82 E-value=3.8e-18 Score=160.87 Aligned_cols=223 Identities=9% Similarity=0.000 Sum_probs=191.4
Q ss_pred hHHHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 039282 38 YDYRLHKRNDFEDSIRRV----PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHAR 113 (476)
Q Consensus 38 ~e~~~~a~~~~e~~l~~~----p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~ 113 (476)
.++. +|...|++++... |.+...|..+|.++...|++++|...|++++..+|.++.+|..++.++...|+++.|.
T Consensus 19 ~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQE-VILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHH-HHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 4454 8999999999873 5668899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Q 039282 114 NVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNV 193 (476)
Q Consensus 114 ~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~ 193 (476)
..|++++...|.+..+|..++.++...|+++.|...|++++...|+......+.......|++++|...|.+++...|.+
T Consensus 98 ~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (275)
T 1xnf_A 98 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177 (275)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999987555555556677899999999999999999987
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChh-hHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHH
Q 039282 194 VSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDE-GAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAI 272 (476)
Q Consensus 194 ~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~-~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i 272 (476)
...|. .+.++...++.+.|...+.+++.. .| ... ....++.
T Consensus 178 ~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~-~~-----~~~~~~~~~~~------------------------------- 219 (275)
T 1xnf_A 178 QWGWN-IVEFYLGNISEQTLMERLKADATD-NT-----SLAEHLSETNF------------------------------- 219 (275)
T ss_dssp STHHH-HHHHHTTSSCHHHHHHHHHHHCCS-HH-----HHHHHHHHHHH-------------------------------
T ss_pred hHHHH-HHHHHHHhcCHHHHHHHHHHHhcc-cc-----cccccccHHHH-------------------------------
Confidence 66655 677777888999999999999877 44 100 0011221
Q ss_pred HhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC
Q 039282 273 VGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK 309 (476)
Q Consensus 273 ~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~ 309 (476)
.++.++...|++++|+..|++++...|
T Consensus 220 ----------~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 220 ----------YLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp ----------HHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ----------HHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 344566688999999999999999998
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.82 E-value=2e-17 Score=150.72 Aligned_cols=212 Identities=16% Similarity=0.139 Sum_probs=186.8
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 039282 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKY 133 (476)
Q Consensus 54 ~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~ 133 (476)
.+|.+...|..+|..+...|++++|+..|++++..+|.++.+|..++.++...|+++.|..+|++++...|.+..+|..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 82 (225)
T 2vq2_A 3 KANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNY 82 (225)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-CCHHHHHHHHHHHHh--cCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 039282 134 IRMEEIA-GNVAAARLIFDRWMH--WTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209 (476)
Q Consensus 134 ~~~~~~~-g~~~~A~~~~eral~--~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~ 209 (476)
+.++... |+++.|...|++++. ..|.. .+|..++..+...|++++|...|++++...|.++.+|..++.++...|+
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 9999999 999999999999999 55554 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHH
Q 039282 210 IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEK 289 (476)
Q Consensus 210 ~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~ 289 (476)
+++|..+|++++.. .| . .....+... +.++.
T Consensus 163 ~~~A~~~~~~~~~~-~~-----~--~~~~~~~~~-----------------------------------------~~~~~ 193 (225)
T 2vq2_A 163 LGDADYYFKKYQSR-VE-----V--LQADDLLLG-----------------------------------------WKIAK 193 (225)
T ss_dssp HHHHHHHHHHHHHH-HC-----S--CCHHHHHHH-----------------------------------------HHHHH
T ss_pred HHHHHHHHHHHHHh-CC-----C--CCHHHHHHH-----------------------------------------HHHHH
Confidence 99999999999998 54 1 122222221 22334
Q ss_pred HcCCHHHHHHHHHHHHhccC-CHHHH
Q 039282 290 SQGERERRRALYERLVERTK-HLKVW 314 (476)
Q Consensus 290 ~~g~~e~Ar~l~e~~l~~~~-~~~vw 314 (476)
..|+.+.|..+++.++...| ++.++
T Consensus 194 ~~~~~~~a~~~~~~~~~~~p~~~~~~ 219 (225)
T 2vq2_A 194 ALGNAQAAYEYEAQLQANFPYSEELQ 219 (225)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcCcHHHHHHHHHHHHHhCCCCHHHH
Confidence 67888999999999888888 55444
No 45
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.82 E-value=2.2e-18 Score=177.41 Aligned_cols=210 Identities=8% Similarity=-0.008 Sum_probs=195.9
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039282 37 LYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEF-DRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNV 115 (476)
Q Consensus 37 l~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~-~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~ 115 (476)
..+...++...++..+...|.+...|..+|..+...|++ ++|+..|++++..+|.++.+|..++.++...|+++.|...
T Consensus 80 ~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 159 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTC 159 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 333345778888888999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHh--------hhHH
Q 039282 116 WDRAVAVLPHVDQLWYKYIRMEEIA---------GNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRY--------EQVE 177 (476)
Q Consensus 116 ~~ral~~~p~~~~lw~~~~~~~~~~---------g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~--------g~~~ 177 (476)
|++++...|+ ..+|..++.++... |+++.|+..|++++..+|++ .+|..++..+... |+++
T Consensus 160 ~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 160 FSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9999999999 79999999999999 99999999999999999985 8899999999999 9999
Q ss_pred HHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchh
Q 039282 178 LARQVFERLVQCHP---NVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESE 254 (476)
Q Consensus 178 ~A~~~~~r~l~~~p---~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e 254 (476)
+|...|++++...| +++.+|..++.++...|++++|...|++++.. .| .....+...+.++...|+++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~p--------~~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL-DP--------AWPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 88999999999999999999999999999999 88 56678888888888888777
Q ss_pred HH
Q 039282 255 SE 256 (476)
Q Consensus 255 ~A 256 (476)
.|
T Consensus 310 eA 311 (474)
T 4abn_A 310 SL 311 (474)
T ss_dssp HH
T ss_pred HH
Confidence 66
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.80 E-value=2.7e-17 Score=153.30 Aligned_cols=184 Identities=15% Similarity=0.089 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...|..+|.++...|++++|...|++++..+|.+..+|..++.++...|+++.|..+|++++.
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 54 EQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp GGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 039282 122 --VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI 198 (476)
Q Consensus 122 --~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~ 198 (476)
..|.+..+|..++.++...|+++.|...|++++...|.. .+|..++.++...|++++|...|++++...|.+...+.
T Consensus 134 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 213 (252)
T 2ho1_A 134 DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLL 213 (252)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 888889999999999999999999999999999999974 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 199 KYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 199 ~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.++.++...|+++.|...++++++. .|
T Consensus 214 ~~~~~~~~~g~~~~A~~~~~~~~~~-~p 240 (252)
T 2ho1_A 214 LGIRLAKVFEDRDTAASYGLQLKRL-YP 240 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH-CC
Confidence 9999999999999999999999999 87
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.79 E-value=4e-18 Score=160.80 Aligned_cols=208 Identities=12% Similarity=0.049 Sum_probs=188.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN----HTLWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~----~~lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
..|...|++++..+|.+...|..+|.++...|++++|+..|++++. .|.+ ..+|..++.++...|+++.|...|+
T Consensus 20 ~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 98 (272)
T 3u4t_A 20 AEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQ 98 (272)
T ss_dssp HHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999998 4444 4459999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Q 039282 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS 196 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~ 196 (476)
+++...|.+..+|..++.++...|+++.|...|++++...|.. .+|..++......+++++|...|++++...|+++.+
T Consensus 99 ~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 178 (272)
T 3u4t_A 99 AAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIG 178 (272)
T ss_dssp HHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHH
Confidence 9999999999999999999999999999999999999999975 778888855566679999999999999999999999
Q ss_pred HHHHHHHHHHcCC---HHHHHHHHHHHHHhhc---CCCCCCC--hhhHHHHHHHHHHHHHHccchhHH
Q 039282 197 WIKYAKFEMRRGE---IDRARNVYERALEKKL---ADGDGDD--DEGAEQLFVAFAEFEERYKESESE 256 (476)
Q Consensus 197 w~~~a~~~~~~g~---~~~A~~~~e~al~~~~---p~~~~~~--~~~~~~l~~~~a~~e~~~~~~e~A 256 (476)
+..++..+...|+ ++.|...|+++++. . | + ......++...+.++...|++++|
T Consensus 179 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 179 YLWRARANAAQDPDTKQGLAKPYYEKLIEV-CAPGG-----AKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCSSCTTHHHHHHHHHH-HGGGG-----GGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHcCcchhhHHHHHHHHHHHHH-Hhccc-----ccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999998 88899999999998 5 3 1 112346788889999999999998
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.79 E-value=3.7e-17 Score=163.87 Aligned_cols=198 Identities=7% Similarity=-0.013 Sum_probs=160.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCC
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH----TLWCKYAEFEMINKFINHARNVWDRAVAV------LPH 125 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~----~lw~~y~~~e~~~~~~~~A~~~~~ral~~------~p~ 125 (476)
|.....+...|..+...|+++.|+..|++++..+|.++ .+|..++.++...|+++.|...|++++.. .|.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 34456777889999999999999999999999999987 58999999999999999999999999988 466
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC------CH-HHHHHHHHHHHHhhh-----------------HHHHHH
Q 039282 126 VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP------DQ-QAWLSYIKFELRYEQ-----------------VELARQ 181 (476)
Q Consensus 126 ~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P------~~-~~w~~~~~~~~~~g~-----------------~~~A~~ 181 (476)
...+|..++.++...|+++.|...|++++...+ .. .++..++.++...|+ +++|..
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 778999999999999999999999999998743 22 578889999999999 999999
Q ss_pred HHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhH
Q 039282 182 VFERLVQCHP------NVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESES 255 (476)
Q Consensus 182 ~~~r~l~~~p------~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~ 255 (476)
.|++++...+ ....++..++.++...|++++|...|++++.. .+.. .+.......+...+.++...|++++
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~--~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI-AREF--GDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHH--TCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHhc--CCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 9999987642 23468899999999999999999999999998 5400 0111122345555555555555555
Q ss_pred H
Q 039282 256 E 256 (476)
Q Consensus 256 A 256 (476)
|
T Consensus 282 A 282 (411)
T 4a1s_A 282 A 282 (411)
T ss_dssp H
T ss_pred H
Confidence 5
No 49
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.79 E-value=7.4e-17 Score=155.52 Aligned_cols=274 Identities=9% Similarity=-0.010 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH----TLWCKYAEFEMINKFINHARNVWDRAVAV------LPHVDQ 128 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~----~lw~~y~~~e~~~~~~~~A~~~~~ral~~------~p~~~~ 128 (476)
...|...|..+...|++++|+..|++++..+|.++ .++..++.++...|+++.|...|++++.. .|....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 84 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 84 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 45678889999999999999999999999999984 78889999999999999999999999987 344577
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---H----HHHHHHHHHHHHhhh--------------------HHHHHH
Q 039282 129 LWYKYIRMEEIAGNVAAARLIFDRWMHWTPD---Q----QAWLSYIKFELRYEQ--------------------VELARQ 181 (476)
Q Consensus 129 lw~~~~~~~~~~g~~~~A~~~~eral~~~P~---~----~~w~~~~~~~~~~g~--------------------~~~A~~ 181 (476)
+|..++.++...|+++.|...|++++...|. . .++..++.++...|+ +++|..
T Consensus 85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~ 164 (338)
T 3ro2_A 85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD 164 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence 8999999999999999999999999887543 1 478888899999999 999999
Q ss_pred HHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhH
Q 039282 182 VFERLVQCH------PNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESES 255 (476)
Q Consensus 182 ~~~r~l~~~------p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~ 255 (476)
.|++++... |....++..++.++...|+++.|...|++++.. .+.. .+.......+..
T Consensus 165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~--~~~~~~~~~~~~------------- 228 (338)
T 3ro2_A 165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI-AKEF--GDKAAERRAYSN------------- 228 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHH--TCHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHhc--CChHHHHHHHHH-------------
Confidence 999988763 233567889999999999999999999999987 5400 000011112222
Q ss_pred HHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-C------HHHHHHHHHHHhhcCCCC
Q 039282 256 EALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-H------LKVWISYAKFEASALSKD 328 (476)
Q Consensus 256 A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~------~~vw~~~a~~e~~~~~~~ 328 (476)
++.++...|++++|..+|++++...+ . ..++..++..+...
T Consensus 229 ----------------------------l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---- 276 (338)
T 3ro2_A 229 ----------------------------LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLL---- 276 (338)
T ss_dssp ----------------------------HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----
T ss_pred ----------------------------HHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHh----
Confidence 33444566777777777777776543 2 44566666666665
Q ss_pred CCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcC
Q 039282 329 GGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFG 408 (476)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G 408 (476)
|++++| ...|++++...+.. ........++..........|
T Consensus 277 ----------------g~~~~A---------------------~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 277 ----------------QDYEKA---------------------IDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp ----------------TCHHHH---------------------HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHHT
T ss_pred ----------------cCHHHH---------------------HHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHHcC
Confidence 677777 77777777766554 333444555666666666777
Q ss_pred CHhhHHHHHhh
Q 039282 409 ELGDVNLVQAM 419 (476)
Q Consensus 409 ~~~~~~~v~~~ 419 (476)
+.+.+.....+
T Consensus 318 ~~~~A~~~~~~ 328 (338)
T 3ro2_A 318 NHDQAMHFAEK 328 (338)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 76666665554
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.79 E-value=8.3e-17 Score=146.58 Aligned_cols=184 Identities=14% Similarity=0.098 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMIN-KFINHARNVWDRAV 120 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~-~~~~~A~~~~~ral 120 (476)
..|...|++++..+|.+...|..+|.++...|++++|..+|++++..+|.+..+|..++.++... |+++.|...|++++
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 25 RQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKAL 104 (225)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred H--hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC-CCHHH
Q 039282 121 A--VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-QQAWLSYIKFELRYEQVELARQVFERLVQCHP-NVVSS 196 (476)
Q Consensus 121 ~--~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~-~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p-~~~~~ 196 (476)
. ..|....+|..++.++...|+++.|+..|++++...|. ...|..++..+...|++++|..+|++++...| .++..
T Consensus 105 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 184 (225)
T 2vq2_A 105 ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADD 184 (225)
T ss_dssp TSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHH
T ss_pred cCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH
Confidence 9 66777899999999999999999999999999999997 48899999999999999999999999999999 88999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 197 WIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 197 w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
+...+.++...|+.+.|...++.++.. .|
T Consensus 185 ~~~~~~~~~~~~~~~~a~~~~~~~~~~-~p 213 (225)
T 2vq2_A 185 LLLGWKIAKALGNAQAAYEYEAQLQAN-FP 213 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHh-CC
Confidence 999999999999999999999999988 77
No 51
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=6.8e-17 Score=155.38 Aligned_cols=225 Identities=10% Similarity=0.087 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGD-TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~-~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
.++..+++....+|.+ ......+++.++..|+++.|+..++. .+|.+..+...++.++...++.+.|...+++++.
T Consensus 17 ~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~ 93 (291)
T 3mkr_A 17 QCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAIVAELDREMS 93 (291)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Confidence 5555565555555554 34555666666666666666665554 2444555556666666666666666666666665
Q ss_pred h--CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH-
Q 039282 122 V--LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI- 198 (476)
Q Consensus 122 ~--~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~- 198 (476)
. .|+++.+|+.++.++...|+++.|...|++ .++..++...+.++.+.|+++.|...|++++..+|++....+
T Consensus 94 ~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~ 169 (291)
T 3mkr_A 94 RSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLA 169 (291)
T ss_dssp SCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHH
Confidence 4 466666666666666666666666666666 223356666666666666666666666666666666442222
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccC
Q 039282 199 -KYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGK 277 (476)
Q Consensus 199 -~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~ 277 (476)
.|+.+....|++++|..+|+++++. .| ....++...+.
T Consensus 170 ~a~~~l~~~~~~~~eA~~~~~~~l~~-~p--------~~~~~~~~la~-------------------------------- 208 (291)
T 3mkr_A 170 TAWVSLAAGGEKLQDAYYIFQEMADK-CS--------PTLLLLNGQAA-------------------------------- 208 (291)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHH-SC--------CCHHHHHHHHH--------------------------------
T ss_pred HHHHHHHhCchHHHHHHHHHHHHHHh-CC--------CcHHHHHHHHH--------------------------------
Confidence 2333444446666666666666666 65 23334433332
Q ss_pred CCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 278 APKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 278 ~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
++...|++++|...|++++...| ++.+|.+++.+....
T Consensus 209 ---------~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~ 247 (291)
T 3mkr_A 209 ---------CHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHL 247 (291)
T ss_dssp ---------HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred ---------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 22345666666666666666666 566666666655555
No 52
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.77 E-value=8.5e-18 Score=180.62 Aligned_cols=173 Identities=12% Similarity=0.096 Sum_probs=166.3
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 039282 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYK 132 (476)
Q Consensus 53 ~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~ 132 (476)
..+|++..+|..+|.++..+|++++|+..|++||+++|++..+|..++.++...|++++|...|++++++.|++..+|+.
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 039282 133 YIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEID 211 (476)
Q Consensus 133 ~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~ 211 (476)
++.++...|++++|+..|+++++.+|+. .+|..++..+...|++++|...|++++...|+++.+|..++..+...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999999999986 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q 039282 212 RARNVYERALEKKLA 226 (476)
Q Consensus 212 ~A~~~~e~al~~~~p 226 (476)
+|.+.|+++++. .|
T Consensus 163 ~A~~~~~kal~l-~~ 176 (723)
T 4gyw_A 163 DYDERMKKLVSI-VA 176 (723)
T ss_dssp THHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHh-Ch
Confidence 999999999987 44
No 53
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.76 E-value=6.4e-17 Score=148.98 Aligned_cols=170 Identities=9% Similarity=-0.020 Sum_probs=141.4
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDC-RNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYI 134 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p-~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~ 134 (476)
|.++..|...|..+...|++++|+..|++++..+| .+..+|..++.++...|+++.|...|++++...|.+..+|..++
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 45677888888888888888888888888888887 78888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 039282 135 RMEEIAGNVAAARLIFDRWMHWTPDQ--------QAWLSYIKFELRYEQVELARQVFERLVQCHPN--VVSSWIKYAKFE 204 (476)
Q Consensus 135 ~~~~~~g~~~~A~~~~eral~~~P~~--------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~--~~~~w~~~a~~~ 204 (476)
.++...|+++.|...|++++...|++ .+|...+..+...|++++|...|++++...|+ ++.+|..++.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 163 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 88888888888888888888888863 34677777777888888888888888888888 778888888888
Q ss_pred HHcCCH---------------------------HHHHHHHHHHHHhhcC
Q 039282 205 MRRGEI---------------------------DRARNVYERALEKKLA 226 (476)
Q Consensus 205 ~~~g~~---------------------------~~A~~~~e~al~~~~p 226 (476)
...|.. ++|...|+++++. .|
T Consensus 164 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l-~p 211 (228)
T 4i17_A 164 YNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL-SP 211 (228)
T ss_dssp HHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC
Confidence 777777 8999999999999 88
No 54
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.76 E-value=9.6e-17 Score=159.80 Aligned_cols=272 Identities=11% Similarity=0.063 Sum_probs=221.8
Q ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHH
Q 039282 42 LHKRNDFEDSIRRVPGDT----AVWINYAKWEGSQNEFDRARSMWELALEE------DCRNHTLWCKYAEFEMINKFINH 111 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~----~~w~~~a~~~~~~~~~~~A~~~~eral~~------~p~~~~lw~~y~~~e~~~~~~~~ 111 (476)
..|...|++++...|.+. .+|..+|.++...|+++.|...|++++.+ .|..+.+|..++.++...|+++.
T Consensus 26 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 105 (406)
T 3sf4_A 26 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 105 (406)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHH
Confidence 489999999999999984 68999999999999999999999999977 44557889999999999999999
Q ss_pred HHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhcCC---C---
Q 039282 112 ARNVWDRAVAVLPHV------DQLWYKYIRMEEIAGN--------------------VAAARLIFDRWMHWTP---D--- 159 (476)
Q Consensus 112 A~~~~~ral~~~p~~------~~lw~~~~~~~~~~g~--------------------~~~A~~~~eral~~~P---~--- 159 (476)
|...|++++...|.. ..++..++.++...|+ ++.|...|.+++...+ +
T Consensus 106 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~ 185 (406)
T 3sf4_A 106 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAA 185 (406)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHH
Confidence 999999999987653 4589999999999999 9999999999987632 2
Q ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCC
Q 039282 160 -QQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVS------SWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDD 232 (476)
Q Consensus 160 -~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~------~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~ 232 (476)
..++..++.++...|++++|...|++++...|.... ++..++.++...|++++|...|++++.. .+.. .+
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~--~~ 262 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQL--KD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHT--TC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-HHhC--cC
Confidence 156888999999999999999999999988765433 8999999999999999999999999987 5400 02
Q ss_pred hhhHHHHHHHHHHHHHHccchhHH--HHHHH------hCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHH
Q 039282 233 DEGAEQLFVAFAEFEERYKESESE--ALRKE------FGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERL 304 (476)
Q Consensus 233 ~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~------~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~ 304 (476)
......++...+.++...|+++.| .|++. .++......+.. .++.++...|++++|...|+++
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACW---------SLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------HHHHHHHHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHH---------HHHHHHHHcCCHHHHHHHHHHH
Confidence 223366788889999999999998 34332 333333333333 6778888999999999999999
Q ss_pred HhccC-------CHHHHHHHHHHHhhcC
Q 039282 305 VERTK-------HLKVWISYAKFEASAL 325 (476)
Q Consensus 305 l~~~~-------~~~vw~~~a~~e~~~~ 325 (476)
+...+ ...++..++.+....|
T Consensus 334 l~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (406)
T 3sf4_A 334 LEISREVGDKSGELTARLNLSDLQMVLG 361 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence 98753 2457777777777663
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.76 E-value=3.9e-17 Score=145.11 Aligned_cols=157 Identities=11% Similarity=0.058 Sum_probs=150.4
Q ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 38 YDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 38 ~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
+++ ..|...|+++|+.+|.+..+|..+|.++...|+++.|...+++++..+|.++.+|..++.+....++++.|...+.
T Consensus 19 g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 97 (184)
T 3vtx_A 19 GDF-DGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQ 97 (184)
T ss_dssp TCH-HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344 4899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH
Q 039282 118 RAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVS 195 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~ 195 (476)
+++...|.+..+|..++.++...|+++.|+..|+++++.+|.+ .+|..++..+...|++++|...|+++++.+|+++.
T Consensus 98 ~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 98 RAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence 9999999999999999999999999999999999999999986 88999999999999999999999999999997543
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.76 E-value=5.3e-17 Score=162.69 Aligned_cols=256 Identities=11% Similarity=0.054 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHhCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHH
Q 039282 42 LHKRNDFEDSIRRVPGDT----AVWINYAKWEGSQNEFDRARSMWELALEE------DCRNHTLWCKYAEFEMINKFINH 111 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~----~~w~~~a~~~~~~~~~~~A~~~~eral~~------~p~~~~lw~~y~~~e~~~~~~~~ 111 (476)
..|+..|++++..+|.+. .+|..+|.++...|++++|...|++++.+ .|....+|..++.++...|+++.
T Consensus 65 ~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 144 (411)
T 4a1s_A 65 RAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDE 144 (411)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHH
Confidence 489999999999999987 58999999999999999999999999987 57778999999999999999999
Q ss_pred HHHHHHHHHHh------CCCcHHHHHHHHHHHHHhCC-----------------HHHHHHHHHHHHhcCCC-------HH
Q 039282 112 ARNVWDRAVAV------LPHVDQLWYKYIRMEEIAGN-----------------VAAARLIFDRWMHWTPD-------QQ 161 (476)
Q Consensus 112 A~~~~~ral~~------~p~~~~lw~~~~~~~~~~g~-----------------~~~A~~~~eral~~~P~-------~~ 161 (476)
|...|++++.. .|....++..++.++...|+ ++.|...|++++...+. ..
T Consensus 145 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 224 (411)
T 4a1s_A 145 AAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGR 224 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999998 45567789999999999999 99999999999876432 15
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhh
Q 039282 162 AWLSYIKFELRYEQVELARQVFERLVQCHPNVVS------SWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEG 235 (476)
Q Consensus 162 ~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~------~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~ 235 (476)
++..++.++...|++++|...|++++...|.... ++..++.++...|++++|...|++++.. .+.. .+...
T Consensus 225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~--~~~~~ 301 (411)
T 4a1s_A 225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL-AVEL--GEREV 301 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHHT--TCHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH-HHHc--CCHHH
Confidence 7888999999999999999999999998775333 8899999999999999999999999987 5400 02223
Q ss_pred HHHHHHHHHHHHHHccchhHH--HHHHHh------CChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhc
Q 039282 236 AEQLFVAFAEFEERYKESESE--ALRKEF------GDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVER 307 (476)
Q Consensus 236 ~~~l~~~~a~~e~~~~~~e~A--~~ek~~------g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~ 307 (476)
...++...+.++...|++++| .|++.. ++......+.. .++.++...|++++|...|++++..
T Consensus 302 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~---------~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 302 EAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW---------SLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH---------HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH---------HHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467888899999999999998 344332 33333333333 6778888999999999999999999
Q ss_pred cC
Q 039282 308 TK 309 (476)
Q Consensus 308 ~~ 309 (476)
.+
T Consensus 373 ~~ 374 (411)
T 4a1s_A 373 AX 374 (411)
T ss_dssp CC
T ss_pred Hh
Confidence 87
No 57
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.76 E-value=2e-16 Score=152.14 Aligned_cols=184 Identities=13% Similarity=0.115 Sum_probs=162.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELALEE--DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYK 132 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~--~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~ 132 (476)
+|.+......++.++...|+.+.|++.+++++.. +|+++.+|+.++.++...|+++.|...|++ |.+..++..
T Consensus 61 ~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~ 135 (291)
T 3mkr_A 61 SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAM 135 (291)
T ss_dssp SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHH
T ss_pred CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHH
Confidence 4556778889999999999999999999999975 699999999999999999999999999998 889999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 039282 133 YIRMEEIAGNVAAARLIFDRWMHWTPDQQ---AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209 (476)
Q Consensus 133 ~~~~~~~~g~~~~A~~~~eral~~~P~~~---~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~ 209 (476)
.+.++...|+++.|...|++++..+|+.. +...++.+....|++++|..+|++++..+|+++.+|..++.++...|+
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~ 215 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGR 215 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999852 233455666667999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccc
Q 039282 210 IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE 252 (476)
Q Consensus 210 ~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~ 252 (476)
+++|...|++++.. .| .+...+..++.+....|+
T Consensus 216 ~~eA~~~l~~al~~-~p--------~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 216 WEAAEGVLQEALDK-DS--------GHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HHHHHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHHcCC
Confidence 99999999999999 88 556666666655444443
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.76 E-value=9.2e-17 Score=154.88 Aligned_cols=256 Identities=11% Similarity=0.059 Sum_probs=208.9
Q ss_pred HHHHHHHHHHHHhCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHH
Q 039282 42 LHKRNDFEDSIRRVPGD----TAVWINYAKWEGSQNEFDRARSMWELALEE------DCRNHTLWCKYAEFEMINKFINH 111 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~----~~~w~~~a~~~~~~~~~~~A~~~~eral~~------~p~~~~lw~~y~~~e~~~~~~~~ 111 (476)
..|...|++++..+|.+ ..+|..+|.++...|+++.|...|++++.. .|..+.+|..++.++...|+++.
T Consensus 22 ~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 101 (338)
T 3ro2_A 22 RAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDE 101 (338)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHH
Confidence 48999999999999998 468889999999999999999999999987 45567889999999999999999
Q ss_pred HHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhcCCC------
Q 039282 112 ARNVWDRAVAVLPHV------DQLWYKYIRMEEIAGN--------------------VAAARLIFDRWMHWTPD------ 159 (476)
Q Consensus 112 A~~~~~ral~~~p~~------~~lw~~~~~~~~~~g~--------------------~~~A~~~~eral~~~P~------ 159 (476)
|...|++++...|.. ..++..++.++...|+ ++.|...|++++...+.
T Consensus 102 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~ 181 (338)
T 3ro2_A 102 AIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAA 181 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 999999999886643 3488899999999999 99999999998876321
Q ss_pred -HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCC
Q 039282 160 -QQAWLSYIKFELRYEQVELARQVFERLVQCHPNV------VSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDD 232 (476)
Q Consensus 160 -~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~------~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~ 232 (476)
..++..++..+...|++++|...|++++...|.. ..++..++.++...|++++|...|++++.. .+.. .+
T Consensus 182 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~--~~ 258 (338)
T 3ro2_A 182 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL-ARQL--KD 258 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHT--TC
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhh--cc
Confidence 1568888899999999999999999999876542 238899999999999999999999999987 5400 02
Q ss_pred hhhHHHHHHHHHHHHHHccchhHH--HHHHH------hCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHH
Q 039282 233 DEGAEQLFVAFAEFEERYKESESE--ALRKE------FGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERL 304 (476)
Q Consensus 233 ~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~------~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~ 304 (476)
......++...+.++...|++++| .|++. .++......+.. .++.++...|++++|...|+++
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~---------~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 259 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACW---------SLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH---------HHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH---------HHHHHHHHcCChHHHHHHHHHH
Confidence 223366788889999999999998 34333 233333333333 6778888999999999999999
Q ss_pred HhccC
Q 039282 305 VERTK 309 (476)
Q Consensus 305 l~~~~ 309 (476)
+...+
T Consensus 330 ~~~~~ 334 (338)
T 3ro2_A 330 LEISR 334 (338)
T ss_dssp HHC--
T ss_pred HHHHH
Confidence 98865
No 59
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.76 E-value=1.5e-15 Score=143.86 Aligned_cols=232 Identities=8% Similarity=-0.002 Sum_probs=186.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHH
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI----NKFINHARNVWDRAVAVLPHVDQLW 130 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~----~~~~~~A~~~~~ral~~~p~~~~lw 130 (476)
+|.++..+..+|..+...|++++|...|++++. |.++.+|..++.++.. .++++.|...|++++... ++..|
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 578889999999999999999999999999988 7888999999999998 999999999999998874 68899
Q ss_pred HHHHHHHHH----hCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039282 131 YKYIRMEEI----AGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR----YEQVELARQVFERLVQCHPNVVSSWIKYAK 202 (476)
Q Consensus 131 ~~~~~~~~~----~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~----~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~ 202 (476)
+.++.++.. .++++.|...|++++... ...++..++.++.. .+++++|...|++++... ++.++..++.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~ 154 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK-YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGS 154 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHH
Confidence 999999988 899999999999998874 56788888888888 899999999999999865 4788889999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHH----ccchhHH--HHHHHhCChHHHHHHH
Q 039282 203 FEMR----RGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEER----YKESESE--ALRKEFGDWVLIEDAI 272 (476)
Q Consensus 203 ~~~~----~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~----~~~~e~A--~~ek~~g~~~~~~~~i 272 (476)
++.. .+++++|...|+++++. . ....+..++.++.. .+++++| .|++.....+ ..+.
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-~----------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~ 221 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-K----------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGC 221 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-T----------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-C----------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHH
Confidence 9988 89999999999999887 2 23466777777778 8888888 4554432211 1111
Q ss_pred HhccCCCCchhhHHHHHH----cCCHHHHHHHHHHHHhccC-CHHHHH
Q 039282 273 VGKGKAPKDKAYIHFEKS----QGERERRRALYERLVERTK-HLKVWI 315 (476)
Q Consensus 273 ~~~~~~p~~~~~~~~~~~----~g~~e~Ar~l~e~~l~~~~-~~~vw~ 315 (476)
. .++.++.. .+++++|...|+++++..| +...++
T Consensus 222 ~---------~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l 260 (273)
T 1ouv_A 222 F---------NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 260 (273)
T ss_dssp H---------HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred H---------HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 1 45667777 8999999999999999988 444443
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.76 E-value=1.2e-16 Score=164.41 Aligned_cols=204 Identities=11% Similarity=0.023 Sum_probs=185.3
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 039282 74 EFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFI-NHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDR 152 (476)
Q Consensus 74 ~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~-~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~er 152 (476)
.++++...++.++...|.++.+|..++.++...|++ +.|...|++++...|.+..+|..++.++...|+++.|...|++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467888899999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHh---------hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCHHHHHH
Q 039282 153 WMHWTPDQQAWLSYIKFELRY---------EQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR--------GEIDRARN 215 (476)
Q Consensus 153 al~~~P~~~~w~~~~~~~~~~---------g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~--------g~~~~A~~ 215 (476)
++...|+..+|..++.++... |++++|...|++++...|+++.+|..++..+... |++++|..
T Consensus 163 al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 163 ALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 999999998999999999999 9999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHH
Q 039282 216 VYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERE 295 (476)
Q Consensus 216 ~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e 295 (476)
.|++++.. .| .......+|..++ .++...|+++
T Consensus 243 ~~~~al~~-~p-----~~~~~~~~~~~lg-----------------------------------------~~~~~~g~~~ 275 (474)
T 4abn_A 243 AYAQAEKV-DR-----KASSNPDLHLNRA-----------------------------------------TLHKYEESYG 275 (474)
T ss_dssp HHHHHHHH-CG-----GGGGCHHHHHHHH-----------------------------------------HHHHHTTCHH
T ss_pred HHHHHHHh-CC-----CcccCHHHHHHHH-----------------------------------------HHHHHcCCHH
Confidence 99999998 55 2113344444443 4445789999
Q ss_pred HHHHHHHHHHhccC-CHHHHHHHHHHHhhc
Q 039282 296 RRRALYERLVERTK-HLKVWISYAKFEASA 324 (476)
Q Consensus 296 ~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~ 324 (476)
+|...|++++...| +...|..++......
T Consensus 276 ~A~~~~~~al~l~p~~~~a~~~l~~~~~~l 305 (474)
T 4abn_A 276 EALEGFSQAAALDPAWPEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999 888999999988887
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=5.7e-17 Score=152.77 Aligned_cols=225 Identities=15% Similarity=0.072 Sum_probs=190.4
Q ss_pred HHHhCCCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCH
Q 039282 68 WEGSQNEFDRARSMWELALEE----DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNV 143 (476)
Q Consensus 68 ~~~~~~~~~~A~~~~eral~~----~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~ 143 (476)
.....|++++|+..|++++.. +|.++.+|..++.++...|+++.|...|++++...|.+..+|..++.++...|++
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCH
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCH
Confidence 334568999999999999987 4567899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 144 AAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222 (476)
Q Consensus 144 ~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~ 222 (476)
+.|...|++++...|.. .+|..++.++...|++++|...|++++...|+++......+ +....|+++.|...|.+++.
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHh
Confidence 99999999999999975 88999999999999999999999999999999775554443 44667999999999999999
Q ss_pred hhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHH
Q 039282 223 KKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYE 302 (476)
Q Consensus 223 ~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e 302 (476)
. .| +. ...+. . +.++...++.+.|...++
T Consensus 173 ~-~~-----~~---~~~~~-~-----------------------------------------~~~~~~~~~~~~a~~~~~ 201 (275)
T 1xnf_A 173 K-SD-----KE---QWGWN-I-----------------------------------------VEFYLGNISEQTLMERLK 201 (275)
T ss_dssp H-SC-----CC---STHHH-H-----------------------------------------HHHHTTSSCHHHHHHHHH
T ss_pred c-CC-----cc---hHHHH-H-----------------------------------------HHHHHHhcCHHHHHHHHH
Confidence 8 77 31 11111 1 112225677788999999
Q ss_pred HHHhccCC-----HHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHH
Q 039282 303 RLVERTKH-----LKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEK 377 (476)
Q Consensus 303 ~~l~~~~~-----~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifer 377 (476)
+++...|. +.+|..++..+... |++++| ...|++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~la~~~~~~--------------------g~~~~A---------------------~~~~~~ 240 (275)
T 1xnf_A 202 ADATDNTSLAEHLSETNFYLGKYYLSL--------------------GDLDSA---------------------TALFKL 240 (275)
T ss_dssp HHCCSHHHHHHHHHHHHHHHHHHHHHT--------------------TCHHHH---------------------HHHHHH
T ss_pred HHhcccccccccccHHHHHHHHHHHHc--------------------CCHHHH---------------------HHHHHH
Confidence 99887762 57899999999888 899999 999999
Q ss_pred HHHHhhhc
Q 039282 378 GINYYKTS 385 (476)
Q Consensus 378 a~~~~~~~ 385 (476)
++...+.+
T Consensus 241 al~~~p~~ 248 (275)
T 1xnf_A 241 AVANNVHN 248 (275)
T ss_dssp HHTTCCTT
T ss_pred HHhCCchh
Confidence 99876543
No 62
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.73 E-value=4.4e-16 Score=146.65 Aligned_cols=197 Identities=17% Similarity=0.098 Sum_probs=169.4
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---
Q 039282 52 IRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAVLPH--- 125 (476)
Q Consensus 52 l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~--- 125 (476)
...+|.+...++..|..+...|++++|+..|++++..+|.+ +.+|+.++.++...|+++.|...|++++...|.
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 35678999999999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred cHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHhcCCCH-HHH-----------------HHHHHHHHHhhhHHHH
Q 039282 126 VDQLWYKYIRMEEI--------AGNVAAARLIFDRWMHWTPDQ-QAW-----------------LSYIKFELRYEQVELA 179 (476)
Q Consensus 126 ~~~lw~~~~~~~~~--------~g~~~~A~~~~eral~~~P~~-~~w-----------------~~~~~~~~~~g~~~~A 179 (476)
.+..++.++.++.. .|+++.|+..|++++...|++ ..+ ..++.++...|++++|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 46789999999999 999999999999999999975 222 6778899999999999
Q ss_pred HHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHH
Q 039282 180 RQVFERLVQCHPN---VVSSWIKYAKFEMRR----------GEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEF 246 (476)
Q Consensus 180 ~~~~~r~l~~~p~---~~~~w~~~a~~~~~~----------g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~ 246 (476)
...|++++..+|+ .+.++..++..+... |++++|...|+++++. .| +.............+
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~-~p-----~~~~~~~a~~~l~~~ 241 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI-FP-----DSPLLRTAEELYTRA 241 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH-CT-----TCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH-CC-----CChHHHHHHHHHHHH
Confidence 9999999999998 467899999999876 8999999999999999 88 433334455555555
Q ss_pred HHHccchh
Q 039282 247 EERYKESE 254 (476)
Q Consensus 247 e~~~~~~e 254 (476)
....++++
T Consensus 242 ~~~~~~~~ 249 (261)
T 3qky_A 242 RQRLTELE 249 (261)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 55555443
No 63
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.72 E-value=2e-16 Score=151.50 Aligned_cols=246 Identities=17% Similarity=0.175 Sum_probs=187.2
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Q 039282 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEE--------DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVL-- 123 (476)
Q Consensus 54 ~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~--------~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~-- 123 (476)
.+|.....|..+|..+...|++++|..+|++++.+ +|....+|..++.++...|+++.|..+|++++...
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 46777899999999999999999999999999985 66778899999999999999999999999999873
Q ss_pred ------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039282 124 ------PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT--------PDQ-QAWLSYIKFELRYEQVELARQVFERLVQ 188 (476)
Q Consensus 124 ------p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~--------P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~ 188 (476)
|....++..++.++...|+++.|...|++++... |.. .++..++.++...|++++|..+|++++.
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5567889999999999999999999999999874 222 6788899999999999999999999999
Q ss_pred h--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCC-CCChhhHHHHHHHHHHHHHHc------cch
Q 039282 189 C--------HPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGD-GDDDEGAEQLFVAFAEFEERY------KES 253 (476)
Q Consensus 189 ~--------~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~-~~~~~~~~~l~~~~a~~e~~~------~~~ 253 (476)
. .|....++..++.++...|++++|...|++++.. .+... .........++.....+.... +.+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR-AHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSF 260 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHHHHC------CCHHHHHHHHHHC-------CCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHH
Confidence 8 6666788999999999999999999999999986 43000 000001112232222222222 222
Q ss_pred hHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC
Q 039282 254 ESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK 309 (476)
Q Consensus 254 e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~ 309 (476)
..+ .+.+.....+....+.. .++.++...|++++|..+|+++++..|
T Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~---------~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 261 GEYGGWYKACKVDSPTVTTTLK---------NLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CCCC---------CHHHHHHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcCCCCchHHHHHH---------HHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 222 23333333333333333 677888899999999999999998765
No 64
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.72 E-value=4.5e-16 Score=136.86 Aligned_cols=168 Identities=10% Similarity=-0.011 Sum_probs=160.9
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~ 137 (476)
....|..+|..+...|++++|...|++++..+|.++.+|..++.++...|+++.|..+|++++...|.+..+|..++.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039282 138 EIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNV 216 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~ 216 (476)
...|+++.|...|++++...|.. .+|..++..+...|++++|..+|++++...|.++.+|..++.++...|++++|...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999875 78999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcC
Q 039282 217 YERALEKKLA 226 (476)
Q Consensus 217 ~e~al~~~~p 226 (476)
|+++++. .|
T Consensus 167 ~~~~~~~-~~ 175 (186)
T 3as5_A 167 FKKANEL-DE 175 (186)
T ss_dssp HHHHHHH-HH
T ss_pred HHHHHHc-CC
Confidence 9999998 66
No 65
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.72 E-value=4e-15 Score=143.27 Aligned_cols=231 Identities=10% Similarity=0.082 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----HHc---CCHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQN--EFDRARSMWELALEEDCRNHTLWCKYAEFE----MIN---KFINHA 112 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~--~~~~A~~~~eral~~~p~~~~lw~~y~~~e----~~~---~~~~~A 112 (476)
.+|...++++|..||.+..+|..-+.+....| +++++...++.+|..+|.+..+|..-+.+. ... ++++++
T Consensus 50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 58999999999999999999999999999998 999999999999999999999999999888 666 789999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHH--HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhh------HHHHHHHH
Q 039282 113 RNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVA--AARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQ------VELARQVF 183 (476)
Q Consensus 113 ~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~--~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~------~~~A~~~~ 183 (476)
..++++++..+|.+..+|...+.+....|.++ .+...+++++..+|.+ .+|.....+....|. ++++...+
T Consensus 130 L~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~ 209 (306)
T 3dra_A 130 FDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYV 209 (306)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHH
Confidence 99999999999999999999999999999888 9999999999999976 899999888888776 89999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHh
Q 039282 184 ERLVQCHPNVVSSWIKYAKFEMRRGEI-DRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEF 262 (476)
Q Consensus 184 ~r~l~~~p~~~~~w~~~a~~~~~~g~~-~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~ 262 (476)
.+++..+|++..+|.....++...|.. +.+..++.++++. .. ....+...+.
T Consensus 210 ~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~-~~-----~~~~s~~al~--------------------- 262 (306)
T 3dra_A 210 KDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDL-EK-----DQVTSSFALE--------------------- 262 (306)
T ss_dssp HHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG-GG-----TEESCHHHHH---------------------
T ss_pred HHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhc-cC-----CCCCCHHHHH---------------------
Confidence 999999999999999999998888863 3344555555543 20 0001111111
Q ss_pred CChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHh-ccC-CHHHHHHHHH
Q 039282 263 GDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVE-RTK-HLKVWISYAK 319 (476)
Q Consensus 263 g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~-~~~-~~~vw~~~a~ 319 (476)
.+++.+.+.|+.++|.++|+++.+ .+| ....|...+.
T Consensus 263 --------------------~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 263 --------------------TLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp --------------------HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred --------------------HHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 334555578999999999999997 688 8889985543
No 66
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.71 E-value=1.2e-15 Score=140.28 Aligned_cols=166 Identities=11% Similarity=0.069 Sum_probs=153.7
Q ss_pred hHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039282 38 YDYRLHKRNDFEDSIRRVP-GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVW 116 (476)
Q Consensus 38 ~e~~~~a~~~~e~~l~~~p-~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~ 116 (476)
+++ ..|...|++++..+| .+...|..+|.++...|++++|+..|++++..+|.++.+|..++.++...|+++.|...|
T Consensus 21 ~~~-~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 99 (228)
T 4i17_A 21 KNY-AVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATL 99 (228)
T ss_dssp TCH-HHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCH-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 334 489999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--H-HHHHHHHHHHHHhhhH----------
Q 039282 117 DRAVAVLPHVD-------QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD--Q-QAWLSYIKFELRYEQV---------- 176 (476)
Q Consensus 117 ~ral~~~p~~~-------~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~--~-~~w~~~~~~~~~~g~~---------- 176 (476)
++++...|.++ .+|..++.++...|+++.|+..|+++++.+|+ . .+|..++.++...|..
T Consensus 100 ~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~ 179 (228)
T 4i17_A 100 TEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGADVLRKATPLAS 179 (228)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTT
T ss_pred HHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999988 66999999999999999999999999999998 5 7888888888887777
Q ss_pred -----------------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039282 177 -----------------ELARQVFERLVQCHPNVVSSWIKYAKFE 204 (476)
Q Consensus 177 -----------------~~A~~~~~r~l~~~p~~~~~w~~~a~~~ 204 (476)
++|...|++++...|+++.+...++.+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 180 SNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 9999999999999999988877776554
No 67
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=4.6e-14 Score=133.45 Aligned_cols=231 Identities=8% Similarity=0.007 Sum_probs=190.3
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCHHHHH
Q 039282 89 DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEI----AGNVAAARLIFDRWMHWTPDQQAWL 164 (476)
Q Consensus 89 ~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~----~g~~~~A~~~~eral~~~P~~~~w~ 164 (476)
+|.++.++..++.++...|+++.|...|++++. |.++..|+.++.++.. .++++.|...|++++... ...++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~ 78 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCH 78 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHH
Confidence 578999999999999999999999999999998 7789999999999999 999999999999999986 668899
Q ss_pred HHHHHHHH----hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhcCCCCCCChhhH
Q 039282 165 SYIKFELR----YEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR----RGEIDRARNVYERALEKKLADGDGDDDEGA 236 (476)
Q Consensus 165 ~~~~~~~~----~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~----~g~~~~A~~~~e~al~~~~p~~~~~~~~~~ 236 (476)
.++.++.. .+++++|...|++++.. +++.++..++.++.. .|++++|...|+++++. .+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~---------- 145 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-ND---------- 145 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TC----------
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-Cc----------
Confidence 99999999 99999999999999987 468999999999999 99999999999999998 33
Q ss_pred HHHHHHHHHHHHH----ccchhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHH----cCCHHHHHHHHHHHHh
Q 039282 237 EQLFVAFAEFEER----YKESESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKS----QGERERRRALYERLVE 306 (476)
Q Consensus 237 ~~l~~~~a~~e~~----~~~~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~----~g~~e~Ar~l~e~~l~ 306 (476)
...+..++.++.. .+++++| .|++...... ..+.. .++.++.. .+++++|...|+++++
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~a~~---------~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD--SPGCF---------NAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHH---------HHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC--HHHHH---------HHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 4466777888777 8888888 4555432211 11111 56677778 9999999999999998
Q ss_pred ccCCHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhh
Q 039282 307 RTKHLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKT 384 (476)
Q Consensus 307 ~~~~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~ 384 (476)
..+ +..+..++.++...... .+++++| ...|++|+..-+.
T Consensus 215 ~~~-~~a~~~l~~~~~~g~~~----------------~~~~~~A---------------------~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 215 LEN-GGGCFNLGAMQYNGEGV----------------TRNEKQA---------------------IENFKKGCKLGAK 254 (273)
T ss_dssp TTC-HHHHHHHHHHHHTTSSS----------------SCCSTTH---------------------HHHHHHHHHHTCH
T ss_pred CCC-HHHHHHHHHHHHcCCCc----------------ccCHHHH---------------------HHHHHHHHHcCCH
Confidence 876 67788888887761000 1778899 9999999877544
No 68
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.67 E-value=2.8e-15 Score=136.49 Aligned_cols=167 Identities=9% Similarity=0.063 Sum_probs=143.4
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCK----------------YAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~----------------y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
+...++..|..+...|+++.|+..|++++..+|+++.+|.. ++.++...|+++.|...|++++.
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999 99999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhh--HHHHHHHHHHHHHhCCCCHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQ--VELARQVFERLVQCHPNVVSSWI 198 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~--~~~A~~~~~r~l~~~p~~~~~w~ 198 (476)
..|++..+|..++.++...|+++.|...|++++..+|++ .+|..++.++...|+ ...+...|.+++...|. ...|.
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~~ 161 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYARY 161 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHHH
Confidence 999999999999999999999999999999999999985 788888888766654 55667778777643333 34567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 199 KYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 199 ~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
..+..+...|++++|...|+++++. .|
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l-~P 188 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILR-FP 188 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTT-SC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh-CC
Confidence 7788888889999999999999998 88
No 69
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.67 E-value=1.4e-16 Score=137.32 Aligned_cols=145 Identities=12% Similarity=0.048 Sum_probs=107.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHH
Q 039282 65 YAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVA 144 (476)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~ 144 (476)
+|.++...|++++|+..|++++..+|.++..|+.++.++...|+++.|...|++++...|+++.+|..++.++...|+++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence 45566666777777777777777777777777777777777778888888888888777777777777777777777788
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 039282 145 AARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQV-FERLVQCHPNVVSSWIKYAKFEMRRGE 209 (476)
Q Consensus 145 ~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~-~~r~l~~~p~~~~~w~~~a~~~~~~g~ 209 (476)
.|+..|+++++.+|++ .+|..++.++...|++++|... +++++..+|+++.+|...+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 8888888887777764 6777777777777777655444 578888888888887777777776664
No 70
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.66 E-value=3e-15 Score=136.34 Aligned_cols=160 Identities=13% Similarity=0.029 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWIN----------------YAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI 105 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~----------------~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~ 105 (476)
..|...|++++..+|.+...|.. +|.++...|++++|+..|++++.++|+++.+|..++.++..
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 100 (208)
T 3urz_A 21 GQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVC 100 (208)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 48999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHH
Q 039282 106 NKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGN--VAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVF 183 (476)
Q Consensus 106 ~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~--~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~ 183 (476)
.|+++.|...|++++.+.|+++..|+.++.++...|. ...+...|.+++...|....|...+......|++++|+..|
T Consensus 101 ~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~ 180 (208)
T 3urz_A 101 RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSL 180 (208)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999999999999999999999876654 45667788887755444456777777788899999999999
Q ss_pred HHHHHhCCCCHHHHHHHHH
Q 039282 184 ERLVQCHPNVVSSWIKYAK 202 (476)
Q Consensus 184 ~r~l~~~p~~~~~w~~~a~ 202 (476)
++++...|+ ......+..
T Consensus 181 ~~al~l~P~-~~~~~~l~~ 198 (208)
T 3urz_A 181 QKVILRFPS-TEAQKTLDK 198 (208)
T ss_dssp HHHTTTSCC-HHHHHHHHH
T ss_pred HHHHHhCCC-HHHHHHHHH
Confidence 999999998 544444444
No 71
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=1.3e-12 Score=134.66 Aligned_cols=250 Identities=10% Similarity=-0.030 Sum_probs=188.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGS----QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI----NKFINHAR 113 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~----~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~----~~~~~~A~ 113 (476)
.+|...|++++.. .+..++..+|.++.. .+++++|...|+++... .++..+..++.++.. .++++.|.
T Consensus 60 ~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~ 135 (490)
T 2xm6_A 60 TQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESV 135 (490)
T ss_dssp HHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 4788999998875 678899999999998 89999999999999864 678899999998888 78999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hhhHHHHHHHHHH
Q 039282 114 NVWDRAVAVLPHVDQLWYKYIRMEEI----AGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR----YEQVELARQVFER 185 (476)
Q Consensus 114 ~~~~ral~~~p~~~~lw~~~~~~~~~----~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~----~g~~~~A~~~~~r 185 (476)
..|+++... .++..++.++.++.. .++++.|+..|++++.. .+...+..++.++.. .+++++|...|++
T Consensus 136 ~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 212 (490)
T 2xm6_A 136 KWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-GNVWSCNQLGYMYSRGLGVERNDAISAQWYRK 212 (490)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 999999875 568889999998887 77899999999999886 356788888888887 7889999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHH----ccchhHH-
Q 039282 186 LVQCHPNVVSSWIKYAKFEMR----RGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEER----YKESESE- 256 (476)
Q Consensus 186 ~l~~~p~~~~~w~~~a~~~~~----~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~----~~~~e~A- 256 (476)
++.. .++.++..++.++.. .+++++|...|+++++. .+ ...+..++.++.. .+++++|
T Consensus 213 a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~----------~~a~~~lg~~y~~g~~~~~d~~~A~ 279 (490)
T 2xm6_A 213 SATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GN----------SIAQFRLGYILEQGLAGAKEPLKAL 279 (490)
T ss_dssp HHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TC----------HHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred HHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CC----------HHHHHHHHHHHHCCCCCCCCHHHHH
Confidence 8875 457888888988887 78899999999998876 22 3345556666666 7788887
Q ss_pred -HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHc-----CCHHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 039282 257 -ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQ-----GERERRRALYERLVERTKHLKVWISYAKFEAS 323 (476)
Q Consensus 257 -~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~-----g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~ 323 (476)
.|++...... ..+.. .++.++... +++++|...|+++++.. ++..+..++.++..
T Consensus 280 ~~~~~a~~~~~--~~a~~---------~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~-~~~a~~~lg~~y~~ 340 (490)
T 2xm6_A 280 EWYRKSAEQGN--SDGQY---------YLAHLYDKGAEGVAKNREQAISWYTKSAEQG-DATAQANLGAIYFR 340 (490)
T ss_dssp HHHHHHHTTTC--HHHHH---------HHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCC--HHHHH---------HHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHh
Confidence 5666543211 11111 334444444 66677777777666543 34455555555544
No 72
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.66 E-value=5.7e-16 Score=166.46 Aligned_cols=182 Identities=12% Similarity=-0.029 Sum_probs=167.7
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--------HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 039282 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELAL--------EEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH 125 (476)
Q Consensus 54 ~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral--------~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~ 125 (476)
.+|.++..+...+ ...|++++|...|++++ ..+|.+..+|...+..+...|+++.|...|++++...|+
T Consensus 389 ~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~ 465 (681)
T 2pzi_A 389 VDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW 465 (681)
T ss_dssp CCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred CCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc
Confidence 4677777776655 77899999999999999 999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039282 126 VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFE 204 (476)
Q Consensus 126 ~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~ 204 (476)
+..+|+.++.++...|++++|...|+++++.+|++ .+|..++..+...|++++ ...|++++..+|+++.+|..++..+
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~ 544 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARAR 544 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999986 889999999999999999 9999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHH
Q 039282 205 MRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248 (476)
Q Consensus 205 ~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~ 248 (476)
...|++++|...|+++++. .| .....+...+..+.
T Consensus 545 ~~~g~~~~A~~~~~~al~l-~P--------~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 545 SAEGDRVGAVRTLDEVPPT-SR--------HFTTARLTSAVTLL 579 (681)
T ss_dssp HHTTCHHHHHHHHHTSCTT-ST--------THHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHhhccc-Cc--------ccHHHHHHHHHHHH
Confidence 9999999999999999998 77 56666766665543
No 73
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.66 E-value=2.3e-12 Score=132.73 Aligned_cols=238 Identities=11% Similarity=-0.052 Sum_probs=129.5
Q ss_pred CCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcH
Q 039282 56 PGDTAVWINYAKWEGS----QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI----NKFINHARNVWDRAVAVLPHVD 127 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~----~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~----~~~~~~A~~~~~ral~~~p~~~ 127 (476)
+.+......++.++.. .+++++|...|++++.. .++.++..++.++.. .++++.|...|+++... .++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 4556666666666665 56666666666666553 455666666666665 56666666666666553 345
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 039282 128 QLWYKYIRMEEI----AGNVAAARLIFDRWMHWTPDQQAWLSYIKFELR----YEQVELARQVFERLVQCHPNVVSSWIK 199 (476)
Q Consensus 128 ~lw~~~~~~~~~----~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~----~g~~~~A~~~~~r~l~~~p~~~~~w~~ 199 (476)
..++.++.++.. .++++.|...|+++.... ....+..++.++.. .+++++|...|++++.. +++.++..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~ 188 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHH
Confidence 566666666655 556666666666665542 33455555555554 45666666666666553 34566666
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHH----ccchhHH--HHHHHhCChHHHH
Q 039282 200 YAKFEMR----RGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEER----YKESESE--ALRKEFGDWVLIE 269 (476)
Q Consensus 200 ~a~~~~~----~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~----~~~~e~A--~~ek~~g~~~~~~ 269 (476)
++.++.. .+++++|...|+++++. . ....+...+.++.. .+++++| .|++.......
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~----------~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~-- 255 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATS-G----------DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNS-- 255 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-T----------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCH--
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHC-C----------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH--
Confidence 6666665 56666666666666654 1 12234444444443 4555555 34444322111
Q ss_pred HHHHhccCCCCchhhHHHHHH----cCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhh
Q 039282 270 DAIVGKGKAPKDKAYIHFEKS----QGERERRRALYERLVERTKHLKVWISYAKFEAS 323 (476)
Q Consensus 270 ~~i~~~~~~p~~~~~~~~~~~----~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~ 323 (476)
.+.. .++.++.. .+++++|..+|+++++. .++..+..++.++..
T Consensus 256 ~a~~---------~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 256 IAQF---------RLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHH---------HHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHHH---------HHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc
Confidence 1111 23333444 56666666666666544 234445555554443
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.66 E-value=8.6e-15 Score=145.81 Aligned_cols=244 Identities=12% Similarity=0.073 Sum_probs=194.3
Q ss_pred HHhCCCCHHHHHH------HHHHHHhCCCHHHHHHHHHHHHHh------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 52 IRRVPGDTAVWIN------YAKWEGSQNEFDRARSMWELALEE------DCRNHTLWCKYAEFEMINKFINHARNVWDRA 119 (476)
Q Consensus 52 l~~~p~~~~~w~~------~a~~~~~~~~~~~A~~~~eral~~------~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ra 119 (476)
+...|.+...++. .|.++...|++++|...|++|+.+ .+....++..+|.++...|+++.|...|.+|
T Consensus 90 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~a 169 (383)
T 3ulq_A 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQA 169 (383)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555 888999999999999999999986 2234688999999999999999999999999
Q ss_pred HHhCCC-------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-------HHHHHHHHHHHHhhhHHHHHHHHHH
Q 039282 120 VAVLPH-------VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-------QAWLSYIKFELRYEQVELARQVFER 185 (476)
Q Consensus 120 l~~~p~-------~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-------~~w~~~~~~~~~~g~~~~A~~~~~r 185 (476)
+...+. ...++..++.++...|+++.|...|++++...|.. .++..++.++...|++++|...|++
T Consensus 170 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 170 YEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 998554 34578899999999999999999999999875432 4788899999999999999999999
Q ss_pred HHH-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccc---hhHH
Q 039282 186 LVQ-----CH-PNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE---SESE 256 (476)
Q Consensus 186 ~l~-----~~-p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~---~e~A 256 (476)
++. .. |..+.++..+|..+...|++++|...|++++.. .+.. .+......+...+.+....|+ +++|
T Consensus 250 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~a 325 (383)
T 3ulq_A 250 AIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY-SQKA---GDVIYLSEFEFLKSLYLSGPDEEAIQGF 325 (383)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHHH---TCHHHHHHHHHHHHHHTSSCCHHHHHHH
T ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 999 45 777889999999999999999999999999987 4300 011222235557777777777 5555
Q ss_pred --HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC
Q 039282 257 --ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK 309 (476)
Q Consensus 257 --~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~ 309 (476)
.+++. +..+....+.. .++.++...|++++|...|++++....
T Consensus 326 l~~~~~~-~~~~~~~~~~~---------~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 326 FDFLESK-MLYADLEDFAI---------DVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHT-TCHHHHHHHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHC-cCHHHHHHHHH---------HHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 34433 55555555444 678889999999999999999988653
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.66 E-value=4.2e-15 Score=159.71 Aligned_cols=161 Identities=15% Similarity=0.158 Sum_probs=153.4
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHH
Q 039282 87 EEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLS 165 (476)
Q Consensus 87 ~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~ 165 (476)
..+|+++.+|..+|.++...|++++|...|++|+++.|++..+|+.++.++...|++++|+..|+++++.+|+. .+|..
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n 82 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999986 89999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHH
Q 039282 166 YIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAE 245 (476)
Q Consensus 166 ~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~ 245 (476)
++..+...|++++|...|++++..+|+++.+|..+|.++...|++++|...|++|++. .| +....+..++.
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-~P--------~~~~a~~~L~~ 153 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL-KP--------DFPDAYCNLAH 153 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CS--------CCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC--------CChHHHhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 88 66778999999
Q ss_pred HHHHccchhHH
Q 039282 246 FEERYKESESE 256 (476)
Q Consensus 246 ~e~~~~~~e~A 256 (476)
.+...|++++|
T Consensus 154 ~l~~~g~~~~A 164 (723)
T 4gyw_A 154 CLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCCTTH
T ss_pred HHHhcccHHHH
Confidence 99999999988
No 76
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.65 E-value=7.4e-16 Score=136.30 Aligned_cols=168 Identities=10% Similarity=-0.024 Sum_probs=147.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYI 134 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~ 134 (476)
||.....++..|..+...|+++.|+..|++++..+|+++.+|..++.++...|+++.|...|++++...| ++.++...+
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~ 80 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIA 80 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHH
Confidence 5666778899999999999999999999999999999999999999999999999999999999999999 787766655
Q ss_pred HHHH-HhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCH
Q 039282 135 RMEE-IAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRGEI 210 (476)
Q Consensus 135 ~~~~-~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~--~~~w~~~a~~~~~~g~~ 210 (476)
.+.. ..+....|+..|++++..+|++ .+|..++..+...|++++|...|++++..+|+. +.+|..++.++...|+.
T Consensus 81 ~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 4432 2223345799999999999985 899999999999999999999999999999975 56999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 039282 211 DRARNVYERALEK 223 (476)
Q Consensus 211 ~~A~~~~e~al~~ 223 (476)
++|...|++++..
T Consensus 161 ~~A~~~y~~al~~ 173 (176)
T 2r5s_A 161 NAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 9999999999876
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.65 E-value=2.6e-14 Score=134.40 Aligned_cols=190 Identities=15% Similarity=0.047 Sum_probs=160.7
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH--
Q 039282 86 LEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-- 160 (476)
Q Consensus 86 l~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-- 160 (476)
..++|.++..++..+..+...|+++.|...|++++...|.+ +.+|+.++.++...|+++.|+..|++++...|++
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 45789999999999999999999999999999999999998 8999999999999999999999999999998853
Q ss_pred --HHHHHHHHHHHH--------hhhHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCHHHH
Q 039282 161 --QAWLSYIKFELR--------YEQVELARQVFERLVQCHPNVVSSW-----------------IKYAKFEMRRGEIDRA 213 (476)
Q Consensus 161 --~~w~~~~~~~~~--------~g~~~~A~~~~~r~l~~~p~~~~~w-----------------~~~a~~~~~~g~~~~A 213 (476)
.++..++..+.. .|++++|...|++++..+|+++.++ +.+|.++...|+++.|
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 678888888888 9999999999999999999987666 7789999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCC
Q 039282 214 RNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGE 293 (476)
Q Consensus 214 ~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~ 293 (476)
...|++++.. .| +.......+...+..+...|..+.+ ....|+
T Consensus 168 ~~~~~~~l~~-~p-----~~~~~~~a~~~l~~~~~~~g~~~~~-------------------------------~~~~~~ 210 (261)
T 3qky_A 168 AVTYEAVFDA-YP-----DTPWADDALVGAMRAYIAYAEQSVR-------------------------------ARQPER 210 (261)
T ss_dssp HHHHHHHHHH-CT-----TSTTHHHHHHHHHHHHHHHHHTSCG-------------------------------GGHHHH
T ss_pred HHHHHHHHHH-CC-----CCchHHHHHHHHHHHHHHhcccchh-------------------------------hcccch
Confidence 9999999999 88 4333555666666655544332111 014589
Q ss_pred HHHHHHHHHHHHhccC-CHH
Q 039282 294 RERRRALYERLVERTK-HLK 312 (476)
Q Consensus 294 ~e~Ar~l~e~~l~~~~-~~~ 312 (476)
+++|...|+++++..| ++.
T Consensus 211 ~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 211 YRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHHHHHCCCChH
Confidence 9999999999999999 543
No 78
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.63 E-value=1.5e-15 Score=163.12 Aligned_cols=181 Identities=8% Similarity=0.001 Sum_probs=162.6
Q ss_pred HHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHH
Q 039282 42 LHKRNDFEDSI--------RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHAR 113 (476)
Q Consensus 42 ~~a~~~~e~~l--------~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~ 113 (476)
.+|...|++++ ..+|.+...|..+|..+...|++++|+..|++++..+|++..+|..++.++...|+++.|.
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 487 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSAT 487 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 48999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 114 NVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 114 ~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
..|++++...|++...|+.++.++...|+++. +..|+++++.+|++ .+|..++..+...|++++|...|++++...|+
T Consensus 488 ~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 488 KHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 99999999999999999999999999999999 99999999999986 88999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 039282 193 VVSSWIKYAKFEMRRGEIDRA-RNVYERALEK 223 (476)
Q Consensus 193 ~~~~w~~~a~~~~~~g~~~~A-~~~~e~al~~ 223 (476)
+..+|..++..+...|..+++ ..-+.+|+..
T Consensus 567 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 598 (681)
T 2pzi_A 567 FTTARLTSAVTLLSGRSTSEVTEEQIRDAARR 598 (681)
T ss_dssp HHHHHHHHHHHTC-------CCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 999999999998776663333 4444444443
No 79
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.63 E-value=1.1e-14 Score=139.55 Aligned_cols=169 Identities=10% Similarity=-0.043 Sum_probs=157.9
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYI 134 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~ 134 (476)
-|.+...++..|..+...|+++.|...|++++..+|+++.++..++.++...|+++.|...|++++...|+....+...+
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~ 192 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ 192 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999997665555555
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 039282 135 RMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNV--VSSWIKYAKFEMRRGEID 211 (476)
Q Consensus 135 ~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~--~~~w~~~a~~~~~~g~~~ 211 (476)
..+...+..+.|...|++++..+|++ .++..++..+...|++++|...|++++..+|++ ..++..++.++...|+.+
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 55677788888999999999999986 899999999999999999999999999999998 889999999999999999
Q ss_pred HHHHHHHHHHHh
Q 039282 212 RARNVYERALEK 223 (476)
Q Consensus 212 ~A~~~~e~al~~ 223 (476)
.|...|++++..
T Consensus 273 ~a~~~~r~al~~ 284 (287)
T 3qou_A 273 ALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 999999999876
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.63 E-value=8e-15 Score=137.92 Aligned_cols=197 Identities=14% Similarity=0.122 Sum_probs=169.0
Q ss_pred CCCCCCChHHhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc--------CCCHHHHH
Q 039282 27 GEQKSVDPTELYDYRLHKRNDFEDSIRRV-PGDTAVWINYAKWEGSQNEFDRARSMWELALEED--------CRNHTLWC 97 (476)
Q Consensus 27 ~~~~i~d~eel~e~~~~a~~~~e~~l~~~-p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~--------p~~~~lw~ 97 (476)
+....++.++-.++-.+|...+++.+..+ |....+|..+|.++...|++++|...|++++... |....+|.
T Consensus 10 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 10 HSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp ---CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 34455666666666668888888887655 6778899999999999999999999999999873 66678999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCH-
Q 039282 98 KYAEFEMINKFINHARNVWDRAVAV--------LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW--------TPDQ- 160 (476)
Q Consensus 98 ~y~~~e~~~~~~~~A~~~~~ral~~--------~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~--------~P~~- 160 (476)
.++.++...|+++.|...|++++.. .|....++..++.++...|+++.|...|++++.. .|..
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999998 4667889999999999999999999999999988 4443
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------------------------------------------------CC
Q 039282 161 QAWLSYIKFELRYEQVELARQVFERLVQC-------------------------------------------------HP 191 (476)
Q Consensus 161 ~~w~~~~~~~~~~g~~~~A~~~~~r~l~~-------------------------------------------------~p 191 (476)
.++..++.++...|++++|...|++++.. +|
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCH
Confidence 67889999999999999999999999975 23
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 192 NVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 192 ~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
..+.++..++.++...|++++|...|+++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44567899999999999999999999999875
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.62 E-value=1.7e-14 Score=126.74 Aligned_cols=153 Identities=11% Similarity=-0.025 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..|...|++++..+|.+...|..+|.++...|++++|...|++++..+|.++.+|..++.++...|+++.|...|++++.
T Consensus 25 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 104 (186)
T 3as5_A 25 SQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104 (186)
T ss_dssp HHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
..|.+..+|..++.++...|+++.|...|++++...|.. .+|..++.++...|++++|...|++++...|++.
T Consensus 105 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 105 ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 999999999999999999999999999999999999975 7899999999999999999999999999988754
No 82
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.62 E-value=1.9e-13 Score=132.36 Aligned_cols=232 Identities=8% Similarity=-0.018 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--
Q 039282 40 YRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNE----------FDRARSMWELALEEDCRNHTLWCKYAEFEMINK-- 107 (476)
Q Consensus 40 ~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~----------~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~-- 107 (476)
+-.+|...++++|..||.+..+|..-+.+....+. ++++...++.++..+|.+..+|..-+.+....+
T Consensus 45 ~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 45 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 124 (331)
T ss_dssp CSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcc
Confidence 44689999999999999999999998888876654 689999999999999999999999999998888
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHh------------
Q 039282 108 FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGN-VAAARLIFDRWMHWTPDQ-QAWLSYIKFELRY------------ 173 (476)
Q Consensus 108 ~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~-~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~------------ 173 (476)
.++.+..++++++..+|++..+|..-+.+....|. ++.+...+.+++..+|.+ ++|.....+....
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~ 204 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 204 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CC
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccccccc
Confidence 48999999999999999999999999999999998 689999999999999986 8999998888776
Q ss_pred --hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHH
Q 039282 174 --EQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR-----------GEIDRARNVYERALEKKLADGDGDDDEGAEQLF 240 (476)
Q Consensus 174 --g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~-----------g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~ 240 (476)
+.++++...+.+++..+|++..+|+.+.-++... +.+++++..+..+++. .| + +.-.+
T Consensus 205 ~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~-~p-----d---~~w~l 275 (331)
T 3dss_A 205 PENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL-EP-----E---NKWCL 275 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH-CT-----T---CHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh-Cc-----c---cchHH
Confidence 6789999999999999999999998665555444 3578899999999998 77 3 21112
Q ss_pred HHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHH
Q 039282 241 VAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYA 318 (476)
Q Consensus 241 ~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a 318 (476)
...+.+.. .+ ...|..++++..+.++.+.+| ...-|..+.
T Consensus 276 ~~~~~~~~----------------------~~----------------~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~ 316 (331)
T 3dss_A 276 LTIILLMR----------------------AL----------------DPLLYEKETLQYFSTLKAVDPMRAAYLDDLR 316 (331)
T ss_dssp HHHHHHHH----------------------HH----------------CTTTTHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHH----------------------hh----------------cccccHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 22221100 00 124667789999999999999 776777654
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.60 E-value=5.2e-15 Score=127.44 Aligned_cols=134 Identities=11% Similarity=0.016 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
++|...|++++..+|.+...|+.+|.++...|++++|+..|++++.++|+++.+|..++.++...|+++.|...|++++.
T Consensus 14 e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 14 ERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHH-HHHHHhcCCCH-HHHHHHHHHHHHhhh
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLI-FDRWMHWTPDQ-QAWLSYIKFELRYEQ 175 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~-~eral~~~P~~-~~w~~~~~~~~~~g~ 175 (476)
+.|+++.+|+.++.++...|++++|... ++++++.+|++ .+|.....++...|+
T Consensus 94 ~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 94 LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999998776654 69999999986 667777777666553
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.60 E-value=8.7e-14 Score=128.06 Aligned_cols=168 Identities=11% Similarity=-0.032 Sum_probs=141.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQ---LWY 131 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~---lw~ 131 (476)
+...+...|..+...|++++|+..|++++..+|.+ ..+++.++.++...|+++.|...|++++...|+++. .++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45678888888888899999999999999888876 368888888889999999999999999998888653 677
Q ss_pred HHHHHHHH------------------hCCHHHHHHHHHHHHhcCCCH-HHH-----------------HHHHHHHHHhhh
Q 039282 132 KYIRMEEI------------------AGNVAAARLIFDRWMHWTPDQ-QAW-----------------LSYIKFELRYEQ 175 (476)
Q Consensus 132 ~~~~~~~~------------------~g~~~~A~~~~eral~~~P~~-~~w-----------------~~~~~~~~~~g~ 175 (476)
..+.++.. .|+++.|...|++++...|++ .++ ...+.++...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 77766654 467889999999999988874 222 456778889999
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 176 VELARQVFERLVQCHPNVV---SSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 176 ~~~A~~~~~r~l~~~p~~~---~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
++.|+..|++++..+|+++ .++..++..+...|+.+.|+..+++++.. .|
T Consensus 163 ~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~-~~ 215 (225)
T 2yhc_A 163 WVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN-SS 215 (225)
T ss_dssp HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC-CS
T ss_pred HHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh-CC
Confidence 9999999999999999975 67999999999999999999999999887 66
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.59 E-value=1.2e-14 Score=136.67 Aligned_cols=228 Identities=16% Similarity=0.155 Sum_probs=172.2
Q ss_pred HhCCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHH
Q 039282 70 GSQNEFDRARSMWELALEE--------DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVL--------PHVDQLWYKY 133 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~--------~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~--------p~~~~lw~~~ 133 (476)
...|+++.|+..|++|+.. +|..+.+|..++.++...|+++.|...|++++... |....+|..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467888888888888873 25668899999999999999999999999999873 5567889999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHH
Q 039282 134 IRMEEIAGNVAAARLIFDRWMHWT--------PDQ-QAWLSYIKFELRYEQVELARQVFERLVQC--------HPNVVSS 196 (476)
Q Consensus 134 ~~~~~~~g~~~~A~~~~eral~~~--------P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~--------~p~~~~~ 196 (476)
+.++...|+++.|...|++++... |.. .++..++.++...|++++|...|++++.. .|....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999999882 332 67889999999999999999999999998 6666788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCC-CCCChhhHHHHHHHHHHHHHHccchhHH-------HHHHHhC-ChHH
Q 039282 197 WIKYAKFEMRRGEIDRARNVYERALEKKLADG-DGDDDEGAEQLFVAFAEFEERYKESESE-------ALRKEFG-DWVL 267 (476)
Q Consensus 197 w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~-~~~~~~~~~~l~~~~a~~e~~~~~~e~A-------~~ek~~g-~~~~ 267 (476)
+..++.++...|++++|...|++++.. .+.. ..........++...+.+....+....+ .+.+..+ ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTR-AHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-HHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 999999999999999999999999986 4300 0000011223455555554443333222 1111111 2233
Q ss_pred HHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhc
Q 039282 268 IEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVER 307 (476)
Q Consensus 268 ~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~ 307 (476)
...+.. .++.++...|++++|..+|+++++.
T Consensus 251 ~~~~~~---------~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLR---------SLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHH---------HHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHH---------HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 222322 6778889999999999999999875
No 86
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.8e-14 Score=136.42 Aligned_cols=184 Identities=14% Similarity=0.139 Sum_probs=162.9
Q ss_pred HHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------cCCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIR--------RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEE--------DCRNHTLWCKYAEFEMI 105 (476)
Q Consensus 42 ~~a~~~~e~~l~--------~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~--------~p~~~~lw~~y~~~e~~ 105 (476)
..|...|++++. .+|.....|..+|.++...|++++|...|++++.. +|....++..++.++..
T Consensus 44 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (311)
T 3nf1_A 44 EVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK 123 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence 377778888877 46777889999999999999999999999999987 35567889999999999
Q ss_pred cCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCH-HHHHHHHH
Q 039282 106 NKFINHARNVWDRAVAVL--------PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW--------TPDQ-QAWLSYIK 168 (476)
Q Consensus 106 ~~~~~~A~~~~~ral~~~--------p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~--------~P~~-~~w~~~~~ 168 (476)
.|+++.|...|++++... |....+|..++.++...|+++.|...|++++.. .|.. .++..++.
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~ 203 (311)
T 3nf1_A 124 RGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLAS 203 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 999999999999999874 556778999999999999999999999999987 4433 67889999
Q ss_pred HHHHhhhHHHHHHHHHHHHHh-------------------------------------------------CCCCHHHHHH
Q 039282 169 FELRYEQVELARQVFERLVQC-------------------------------------------------HPNVVSSWIK 199 (476)
Q Consensus 169 ~~~~~g~~~~A~~~~~r~l~~-------------------------------------------------~p~~~~~w~~ 199 (476)
++...|++++|...|++++.. +|..+.+|..
T Consensus 204 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 283 (311)
T 3nf1_A 204 CYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKN 283 (311)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHH
Confidence 999999999999999999974 3556788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 200 YAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 200 ~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
++.++...|++++|...|+++++. .|
T Consensus 284 la~~~~~~g~~~~A~~~~~~al~l-~~ 309 (311)
T 3nf1_A 284 LGALYRRQGKFEAAETLEEAAMRS-RK 309 (311)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-HC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH-hh
Confidence 999999999999999999999998 55
No 87
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.58 E-value=3.4e-15 Score=148.74 Aligned_cols=289 Identities=13% Similarity=0.066 Sum_probs=137.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
.+|...+++. .++.+|..+|..+...|+++.|+..|.++ .++..|...+......|+++.|+.+++.+.+
T Consensus 20 d~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark 89 (449)
T 1b89_A 20 DRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARK 89 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4778888887 23469999999999999999999999875 4667888889988899999999999999998
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYA 201 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a 201 (476)
..|. +.+...++.++.++|++..+..+|. .|+...|...+..+...|.++.|+..|.++ ..|..++
T Consensus 90 ~~~~-~~i~~~Li~~Y~Klg~l~e~e~f~~-----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA 155 (449)
T 1b89_A 90 KARE-SYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLA 155 (449)
T ss_dssp --------------------CHHHHTTTTT-----CC----------------CTTTHHHHHHHT--------TCHHHHH
T ss_pred hCcc-chhHHHHHHHHHHhCCHHHHHHHHc-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHH
Confidence 7555 7888889999999999999988885 377789999999999999999999999975 5899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCc
Q 039282 202 KFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKD 281 (476)
Q Consensus 202 ~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~ 281 (476)
..+.+.|+++.|.+.|.++. ....|...+..+...|+++.|. ..|.. ....|..
T Consensus 156 ~~L~~Lg~yq~AVea~~KA~--------------~~~~Wk~v~~aCv~~~ef~lA~---~~~l~---------L~~~ad~ 209 (449)
T 1b89_A 156 STLVHLGEYQAAVDGARKAN--------------STRTWKEVCFACVDGKEFRLAQ---MCGLH---------IVVHADE 209 (449)
T ss_dssp HHHHTTTCHHHHHHHHHHHT--------------CHHHHHHHHHHHHHTTCHHHHH---HTTTT---------TTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHcC--------------CchhHHHHHHHHHHcCcHHHHH---HHHHH---------HHhCHhh
Confidence 99999999999999999982 1347888888888899999881 12211 0011111
Q ss_pred h-hhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhH
Q 039282 282 K-AYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYH 359 (476)
Q Consensus 282 ~-~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 359 (476)
. ..+.++.+.|.+++|..++++++...+ |..+|..++.++.... .+++.+.
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~------------------p~k~~eh--------- 262 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK------------------PQKMREH--------- 262 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC------------------HHHHHHH---------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC------------------HHHHHHH---------
Confidence 0 455778899999999999999999998 9999999999998873 3777777
Q ss_pred HHHhhhhccCchhHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHH-HHhhCCh
Q 039282 360 QFATCLISSLSSSGVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNL-VQAMLPK 422 (476)
Q Consensus 360 ~~~~~~~~~~~~r~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~-v~~~~p~ 422 (476)
..+|...+...|-- . -.+..-+|..|.-....+|+.+.+.. +.+..|.
T Consensus 263 ------------l~~~~~~ini~k~~--~-~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~ 311 (449)
T 1b89_A 263 ------------LELFWSRVNIPKVL--R-AAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 311 (449)
T ss_dssp ------------HHHHSTTSCHHHHH--H-HHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTT
T ss_pred ------------HHHHHHHhcCcHHH--H-HHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChh
Confidence 67777666555510 0 00114589999999999999876544 4444444
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.58 E-value=5.7e-14 Score=134.82 Aligned_cols=198 Identities=9% Similarity=0.031 Sum_probs=158.7
Q ss_pred cHHHHHHHHhhccCCC-CCCChHHh--hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 039282 14 TAEQILRESQEHFGEQ-KSVDPTEL--YDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDC 90 (476)
Q Consensus 14 ~a~q~l~~a~~~~~~~-~i~d~eel--~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p 90 (476)
.|+.++++|-...++. .+.+.=.- .+.-..|...|+++ +.++...|++++|...|++++.+.+
T Consensus 3 ~a~~~~~~a~k~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~ 68 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSGFMKLFSGSDSYKFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQK 68 (292)
T ss_dssp CHHHHHHHHHHHSSCCCTHHHHHSCCSHHHHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCcCCCcchhcCCCCCccHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3678888888764432 11111000 11123666777776 5567789999999999999998754
Q ss_pred C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcC
Q 039282 91 R------NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV------DQLWYKYIRMEEIA-GNVAAARLIFDRWMHWT 157 (476)
Q Consensus 91 ~------~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~------~~lw~~~~~~~~~~-g~~~~A~~~~eral~~~ 157 (476)
. ...+|..++.++...|+++.|...|++++.+.|.. ...|..++.++... |+++.|+..|++++...
T Consensus 69 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~ 148 (292)
T 1qqe_A 69 KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY 148 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence 3 25789999999999999999999999999987653 46889999999996 99999999999999987
Q ss_pred CC-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 158 PD-------QQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVS-------SWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 158 P~-------~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~-------~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
|. ..++..++.++...|++++|...|++++...|++.. +|..++.++...|+++.|+..|++++..
T Consensus 149 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 149 AQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 74 256888999999999999999999999999987543 6788999999999999999999999998
Q ss_pred hcC
Q 039282 224 KLA 226 (476)
Q Consensus 224 ~~p 226 (476)
.|
T Consensus 229 -~p 230 (292)
T 1qqe_A 229 -DP 230 (292)
T ss_dssp ---
T ss_pred -CC
Confidence 76
No 89
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.58 E-value=5.8e-13 Score=132.50 Aligned_cols=249 Identities=11% Similarity=0.038 Sum_probs=190.1
Q ss_pred HHHHHHHHhcCCCHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHh---CCC---cHHHHHHHHHHHHHhCCHHHHH
Q 039282 80 SMWELALEEDCRNHTLWCK------YAEFEMINKFINHARNVWDRAVAV---LPH---VDQLWYKYIRMEEIAGNVAAAR 147 (476)
Q Consensus 80 ~~~eral~~~p~~~~lw~~------y~~~e~~~~~~~~A~~~~~ral~~---~p~---~~~lw~~~~~~~~~~g~~~~A~ 147 (476)
..++.+ ...|.+...++. .|..+...|+++.|...|++++.. .|+ ...++..++.++...|+++.|.
T Consensus 85 ~~~~~i-~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~ 163 (383)
T 3ulq_A 85 DLLLEI-DKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSM 163 (383)
T ss_dssp HHHHHH-HHHTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHH-HhcCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 556653 334444444444 788899999999999999999987 333 4578999999999999999999
Q ss_pred HHHHHHHhcCCCH--------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHH
Q 039282 148 LIFDRWMHWTPDQ--------QAWLSYIKFELRYEQVELARQVFERLVQCHPNVV------SSWIKYAKFEMRRGEIDRA 213 (476)
Q Consensus 148 ~~~eral~~~P~~--------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~------~~w~~~a~~~~~~g~~~~A 213 (476)
..|.+++...+.. .++..++..+...|++++|...|++++...|... .++..+|.++...|++++|
T Consensus 164 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 164 DYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp HHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999999874421 5688888999999999999999999998766432 4899999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHh------CChHHHHHHHHhccCCCCchhhH
Q 039282 214 RNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEF------GDWVLIEDAIVGKGKAPKDKAYI 285 (476)
Q Consensus 214 ~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~------g~~~~~~~~i~~~~~~p~~~~~~ 285 (476)
...|+++++. .... .+.......+...+..+...|+++.| .|++.. ++...... +. .++
T Consensus 244 ~~~~~~al~~-~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~---------~l~ 310 (383)
T 3ulq_A 244 IPYFKRAIAV-FEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FE---------FLK 310 (383)
T ss_dssp HHHHHHHHHH-HHHT--TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HH---------HHH
T ss_pred HHHHHHHHHH-HHhh--ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HH---------HHH
Confidence 9999999994 2100 01124577888999999999999999 344432 23222222 11 456
Q ss_pred HHHHHcCC---HHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHH
Q 039282 286 HFEKSQGE---RERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQF 361 (476)
Q Consensus 286 ~~~~~~g~---~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 361 (476)
.++...|+ +++|..++++. ...+ ...++..++.++... |++++|
T Consensus 311 ~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~--------------------g~~~~A----------- 358 (383)
T 3ulq_A 311 SLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHER--------------------KNFQKA----------- 358 (383)
T ss_dssp HHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT--------------------TCHHHH-----------
T ss_pred HHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHC--------------------CCHHHH-----------
Confidence 67778888 88888888887 2222 466888899988888 999999
Q ss_pred HhhhhccCchhHHHHHHHHHhhh
Q 039282 362 ATCLISSLSSSGVFEKGINYYKT 384 (476)
Q Consensus 362 ~~~~~~~~~~r~ifera~~~~~~ 384 (476)
...|++|+.....
T Consensus 359 ----------~~~~~~al~~~~~ 371 (383)
T 3ulq_A 359 ----------SAYFLKVEQVRQL 371 (383)
T ss_dssp ----------HHHHHHHHHHHTS
T ss_pred ----------HHHHHHHHHHHHH
Confidence 9999999887654
No 90
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.57 E-value=3.3e-12 Score=126.28 Aligned_cols=274 Identities=12% Similarity=0.039 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------H
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHT-----LWCKYAEFEMINKFINHARNVWDRAVAVLPHVD------Q 128 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~-----lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~------~ 128 (476)
..+...+.++...|+++.|+..+++++...|.+.. ++..++.++...|+++.|+..+++++...|... .
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34566777888899999999999999998876532 567778888999999999999999998765432 3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-----H
Q 039282 129 LWYKYIRMEEIAGNVAAARLIFDRWMHWT--------PDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNV-----V 194 (476)
Q Consensus 129 lw~~~~~~~~~~g~~~~A~~~~eral~~~--------P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~-----~ 194 (476)
.+..++.++...|+++.|+..|++++... |.. ..+..++..+...|++++|...+++++...|.. .
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 35678888999999999999999999764 222 456678888999999999999999999988752 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH--HHHHHhCChHH----H
Q 039282 195 SSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE--ALRKEFGDWVL----I 268 (476)
Q Consensus 195 ~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A--~~ek~~g~~~~----~ 268 (476)
.++..++.++...|++++|...+++++.. .+.. .........+....+.+....|+++.| .+++.....+. .
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 252 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENL-LGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL 252 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-HTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhcc-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhh
Confidence 56888999999999999999999999987 5400 000000011111233445566777766 23332211100 0
Q ss_pred HHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CH------HHHHHHHHHHhhcCCCCCCCCCCchhHHHH
Q 039282 269 EDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HL------KVWISYAKFEASALSKDGGNPDLSEADLCE 341 (476)
Q Consensus 269 ~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~------~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~ 341 (476)
..... .++..+...|++++|..++++++...+ .. .++..++......
T Consensus 253 ~~~~~---------~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~----------------- 306 (373)
T 1hz4_A 253 QGQWR---------NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQA----------------- 306 (373)
T ss_dssp HHHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----------------
T ss_pred HHHHH---------HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHh-----------------
Confidence 00111 456667777888888888888777765 21 2455555555555
Q ss_pred hhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 342 RKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 342 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
|+.++| +..|++++......
T Consensus 307 ---g~~~~A---------------------~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 307 ---GRKSDA---------------------QRVLLDALKLANRT 326 (373)
T ss_dssp ---TCHHHH---------------------HHHHHHHHHHHHHH
T ss_pred ---CCHHHH---------------------HHHHHHHHHHhccc
Confidence 777777 88888877766543
No 91
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.57 E-value=3.9e-12 Score=140.39 Aligned_cols=272 Identities=14% Similarity=0.076 Sum_probs=204.0
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIR 135 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~ 135 (476)
.+++.+|..+|..+...|++++|+..|++| +++..|...+....+.|+++.|...|..|....+. +.+-..++.
T Consensus 1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Laf 1175 (1630)
T 1xi4_A 1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIF 1175 (1630)
T ss_pred cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHH
Confidence 467889999999999999999999999886 78888999999999999999999999988887754 222223666
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039282 136 MEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARN 215 (476)
Q Consensus 136 ~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~ 215 (476)
.+.+.++++. ..-| + ..|....|...+..+...|+++.|..+|.++ ..|..++..+.+.|+++.|.+
T Consensus 1176 aYAKl~rlee-le~f---I-~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1176 ALAKTNRLAE-LEEF---I-NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHhhcCHHH-HHHH---H-hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHH
Confidence 6666677764 3333 2 3456667888999999999999999999994 589999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHH-H-HHhCChHHHHHHHHhccCCCCchhhHHHHHHcCC
Q 039282 216 VYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEAL-R-KEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGE 293 (476)
Q Consensus 216 ~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~-e-k~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~ 293 (476)
.+.+|.+. ..|...+..+...|+|..|+. . ...-+.+.++ ..+.++.+.|.
T Consensus 1243 aarKA~n~--------------~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLe-------------eli~yYe~~G~ 1295 (1630)
T 1xi4_A 1243 GARKANST--------------RTWKEVCFACVDGKEFRLAQMCGLHIVVHADELE-------------ELINYYQDRGY 1295 (1630)
T ss_pred HHHHhCCH--------------HHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHH-------------HHHHHHHHcCC
Confidence 99987332 366666666667777777721 1 0001122222 45678889999
Q ss_pred HHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHHHhhHhhHHhhhhhhhHHhHHHHhhhhccCchh
Q 039282 294 RERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLCERKKQSIRGARRSHRKIYHQFATCLISSLSSS 372 (476)
Q Consensus 294 ~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r 372 (476)
+++|+.+|+.+|...+ |..+|..++.++..... ++..++ -
T Consensus 1296 feEAI~LlE~aL~LeraH~gmftELaiLyaKy~p------------------eklmEh---------------------l 1336 (1630)
T 1xi4_A 1296 FEELITMLEAALGLERAHMGMFTELAILYSKFKP------------------QKMREH---------------------L 1336 (1630)
T ss_pred HHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCH------------------HHHHHH---------------------H
Confidence 9999999999999998 99999888888887632 677777 7
Q ss_pred HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHhcCCHhhHHH
Q 039282 373 GVFEKGINYYKTSAPEMMEERVMLLEEWLNMERSFGELGDVNL 415 (476)
Q Consensus 373 ~ifera~~~~~~~~~~~~~~r~~l~~~~~~fE~~~G~~~~~~~ 415 (476)
..|+..+...+-- --.+.+-+|..+.-...++|+.+.+..
T Consensus 1337 k~f~~rini~k~~---r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1337 ELFWSRVNIPKVL---RAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhcccchHh---HHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7777766544311 012337789999999999999876653
No 92
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.56 E-value=1.9e-14 Score=124.15 Aligned_cols=119 Identities=12% Similarity=0.022 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.+-..|.+++..+|.+...|..+|..+...|++++|...|++++..+|.++.+|..++.++...|+++.|...|++++.+
T Consensus 20 ~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 20 NSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 34445778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHH
Q 039282 123 LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ 161 (476)
Q Consensus 123 ~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~ 161 (476)
.|+++.+|+.++.++...|+++.|+..|++++...|++.
T Consensus 100 ~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999875
No 93
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.55 E-value=5.6e-13 Score=132.50 Aligned_cols=234 Identities=13% Similarity=0.049 Sum_probs=186.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------cH
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDC------RNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH-------VD 127 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p------~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~-------~~ 127 (476)
.+...|..+...|+++.|...|++|+.+.+ ....++..+|.++...|++..|...+++|+...+. ..
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 566778888999999999999999997632 24678999999999999999999999999987553 24
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CH----HHHHHHHHHHHHhhhHHHHHHHHHHHHH-----hCCCCHH
Q 039282 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHWTP---DQ----QAWLSYIKFELRYEQVELARQVFERLVQ-----CHPNVVS 195 (476)
Q Consensus 128 ~lw~~~~~~~~~~g~~~~A~~~~eral~~~P---~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~-----~~p~~~~ 195 (476)
.++..++.++...|+++.|...|.+++...+ +. .++..++..+...|++++|...|++++. .+|..+.
T Consensus 183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 5788999999999999999999999998643 22 5688889999999999999999999999 7787788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccc---hhHH--HHHHHhCChHHHHH
Q 039282 196 SWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKE---SESE--ALRKEFGDWVLIED 270 (476)
Q Consensus 196 ~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~---~e~A--~~ek~~g~~~~~~~ 270 (476)
++..+|..+...|++++|...|++++.. .+... .......+...+.+....++ +.+| .|++ .+..+....
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~---~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~ 337 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDH-ITARS---HKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCTTC---CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHcC---CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHH
Confidence 9999999999999999999999999998 65111 11222334555555555565 5555 2333 344444444
Q ss_pred HHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhcc
Q 039282 271 AIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERT 308 (476)
Q Consensus 271 ~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~ 308 (476)
+.. .++.++...|++++|...|+++++..
T Consensus 338 ~~~---------~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 338 CAR---------SAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHH---------HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHH---------HHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 443 67888999999999999999998764
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.55 E-value=1.5e-12 Score=125.34 Aligned_cols=166 Identities=13% Similarity=0.114 Sum_probs=151.0
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH----HHh---CCHHH
Q 039282 75 FDRARSMWELALEEDCRNHTLWCKYAEFEMINK--FINHARNVWDRAVAVLPHVDQLWYKYIRME----EIA---GNVAA 145 (476)
Q Consensus 75 ~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~--~~~~A~~~~~ral~~~p~~~~lw~~~~~~~----~~~---g~~~~ 145 (476)
.++|..+++++|.++|.+..+|..-+.+....+ .++.+...++.++..+|.+..+|+..+.+. ... ++++.
T Consensus 49 s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 49 SERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred CHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 468999999999999999999999999999999 999999999999999999999999999988 666 78999
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC------HHHHHHH
Q 039282 146 ARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVE--LARQVFERLVQCHPNVVSSWIKYAKFEMRRGE------IDRARNV 216 (476)
Q Consensus 146 A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~--~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~------~~~A~~~ 216 (476)
+..++++++..+|.+ .+|.....+....|.++ ++...+++++..+|.+..+|...+.+....|. ++++...
T Consensus 129 EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~ 208 (306)
T 3dra_A 129 EFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNY 208 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHH
Confidence 999999999999986 89999999999999888 99999999999999999999999988888877 8999999
Q ss_pred HHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHH
Q 039282 217 YERALEKKLADGDGDDDEGAEQLFVAFAEFEER 249 (476)
Q Consensus 217 ~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~ 249 (476)
+.++|.. .| .+...|.....++..
T Consensus 209 ~~~aI~~-~p--------~n~SaW~y~~~ll~~ 232 (306)
T 3dra_A 209 VKDKIVK-CP--------QNPSTWNYLLGIHER 232 (306)
T ss_dssp HHHHHHH-CS--------SCHHHHHHHHHHHHH
T ss_pred HHHHHHh-CC--------CCccHHHHHHHHHHh
Confidence 9999999 88 566677665554443
No 95
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.55 E-value=9.8e-14 Score=145.83 Aligned_cols=160 Identities=13% Similarity=0.103 Sum_probs=139.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
.+|...|++++..+|.+...|..+|..+...|++++|...|++++..+|.+..+|..++.++...|+++.|...|++++.
T Consensus 6 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 85 (568)
T 2vsy_A 6 PRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASD 85 (568)
T ss_dssp ---------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHh---hhHHHHHHHHHHHHHhCCCCHHHH
Q 039282 122 VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRY---EQVELARQVFERLVQCHPNVVSSW 197 (476)
Q Consensus 122 ~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~---g~~~~A~~~~~r~l~~~p~~~~~w 197 (476)
..|.+..+|..++.++...|+++.|...|+++++.+|++ .++..++..+... |++++|...|++++...|++...+
T Consensus 86 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 165 (568)
T 2vsy_A 86 AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPF 165 (568)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSCHH
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccChH
Confidence 999999999999999999999999999999999999975 7899999999999 999999999999999999987777
Q ss_pred HHHH
Q 039282 198 IKYA 201 (476)
Q Consensus 198 ~~~a 201 (476)
..++
T Consensus 166 ~~l~ 169 (568)
T 2vsy_A 166 AFLS 169 (568)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 7665
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.54 E-value=8.4e-14 Score=116.13 Aligned_cols=117 Identities=11% Similarity=-0.005 Sum_probs=98.3
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 039282 51 SIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLW 130 (476)
Q Consensus 51 ~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw 130 (476)
+...||.....|...|..+...|++++|+..|++++.++|.++.+|..++.++...|+++.|...|++++.+.|.+...|
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 34467888888888898888899999999999999999999999999999988899999999999999999988888888
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Q 039282 131 YKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYI 167 (476)
Q Consensus 131 ~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~ 167 (476)
+.++.++...|+++.|+..|+++++.+|++ .++..+.
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 888888888888888888888888888875 4444443
No 97
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.53 E-value=2.1e-13 Score=143.32 Aligned_cols=154 Identities=14% Similarity=0.051 Sum_probs=131.9
Q ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 039282 72 QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFD 151 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~e 151 (476)
.|++++|...|++++..+|.+..+|..++.++...|+++.|...|++++...|.+..+|..++.++...|+++.|...|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhhcC
Q 039282 152 RWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR---GEIDRARNVYERALEKKLA 226 (476)
Q Consensus 152 ral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~---g~~~~A~~~~e~al~~~~p 226 (476)
++++.+|++ ..|..++..+...|++++|...|++++...|+++.++..++..+... |++++|...|+++++. .|
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~-~p 159 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ-GV 159 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH-TC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc-CC
Confidence 999999985 88999999999999999999999999999999999999999999999 9999999999999998 77
No 98
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.51 E-value=4.7e-12 Score=123.17 Aligned_cols=238 Identities=8% Similarity=0.054 Sum_probs=179.0
Q ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-C-CHHHHHH
Q 039282 72 QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK-FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA-G-NVAAARL 148 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~-~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~-g-~~~~A~~ 148 (476)
.+..++|..+++++|.++|.+..+|..-+.+....| .++.+...++.++..+|.+..+|.....+.... + +++.+..
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 344568999999999999999999999999888888 599999999999999999999999999888887 7 8889999
Q ss_pred HHHHHHhcCCCH-HHHHHHHHHHHHhhhHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------HHH
Q 039282 149 IFDRWMHWTPDQ-QAWLSYIKFELRYEQVE--------LARQVFERLVQCHPNVVSSWIKYAKFEMRRGE-------IDR 212 (476)
Q Consensus 149 ~~eral~~~P~~-~~w~~~~~~~~~~g~~~--------~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~-------~~~ 212 (476)
++.+++..+|.+ .+|....-+....|.++ ++...+++++..+|.+..+|...+.+....|. +++
T Consensus 147 ~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 147 YIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHH
Confidence 999999999976 88888888888877777 99999999999999999999999999888876 789
Q ss_pred HHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhH----HHHHHHhCC-----hHHHHHHHHh-cc------
Q 039282 213 ARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESES----EALRKEFGD-----WVLIEDAIVG-KG------ 276 (476)
Q Consensus 213 A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~----A~~ek~~g~-----~~~~~~~i~~-~~------ 276 (476)
+.+.+.++|.. .| .+...|.....+..+.|.... +..- ..|. .+.+...... .+
T Consensus 227 ELe~~~~aI~~-~P--------~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 227 ELIYILKSIHL-IP--------HNVSAWNYLRGFLKHFSLPLVPILPAILP-YTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp HHHHHHHHHHH-CT--------TCHHHHHHHHHHHHHTTCCSGGGHHHHGG-GTC--------------CCCCC-CCCSS
T ss_pred HHHHHHHHHHh-CC--------CCHHHHHHHHHHHHhcCCCcccccccccc-cccccccccchhHHHHHHHHHhcccccc
Confidence 99999999999 88 666777766655555443200 0000 0000 0011111110 00
Q ss_pred CCCCch----hhHHHHHHcCCHHHHHHHHHHHH-hccC-CHHHHHHHHH
Q 039282 277 KAPKDK----AYIHFEKSQGERERRRALYERLV-ERTK-HLKVWISYAK 319 (476)
Q Consensus 277 ~~p~~~----~~~~~~~~~g~~e~Ar~l~e~~l-~~~~-~~~vw~~~a~ 319 (476)
..+.+. .+++++...|+.++|.++|+.+. +.+| ....|.-.+.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 001111 56688888999999999999997 4467 7778875543
No 99
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.51 E-value=2.1e-13 Score=113.68 Aligned_cols=120 Identities=9% Similarity=-0.062 Sum_probs=112.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HH
Q 039282 84 LALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QA 162 (476)
Q Consensus 84 ral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~ 162 (476)
|+..++|.....|...|..+...|+++.|...|++++...|.++.+|..++.++...|+++.|+..|+++++.+|+. .+
T Consensus 4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a 83 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG 83 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999985 88
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 039282 163 WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKF 203 (476)
Q Consensus 163 w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~ 203 (476)
|..++..+...|++++|...|++++..+|++.+++..++.+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999999999999999999998887765
No 100
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.51 E-value=1.2e-12 Score=108.17 Aligned_cols=133 Identities=17% Similarity=0.307 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEI 139 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~ 139 (476)
..|..+|..+...|++++|..+|++++..+|.++..|..++.++...|+++.|..+|++++...|.+..+|..++.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 35677777777788888888888888888888888888888877778888888888888888777777777777777777
Q ss_pred hCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 140 AGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 140 ~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
.|+++.|...|++++...|.. ..|..++.++...|++++|...|++++...|+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 777777777777777776653 56666666666677777777777777666664
No 101
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.51 E-value=3.2e-11 Score=116.72 Aligned_cols=206 Identities=11% Similarity=0.036 Sum_probs=167.5
Q ss_pred hCCCH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 039282 71 SQNEF-DRARSMWELALEEDCRNHTLWCKYAEFEMINKF----------INHARNVWDRAVAVLPHVDQLWYKYIRMEEI 139 (476)
Q Consensus 71 ~~~~~-~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~----------~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~ 139 (476)
..|++ ++|..+++.+|.++|.+.++|..-..+....+. ++.+..+++.++..+|.+..+|..-+.+...
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 44555 489999999999999999999999988776655 6899999999999999999999999999999
Q ss_pred hC--CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhh-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------
Q 039282 140 AG--NVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQ-VELARQVFERLVQCHPNVVSSWIKYAKFEMRR-------- 207 (476)
Q Consensus 140 ~g--~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~-~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~-------- 207 (476)
.| .++.+..++.+++..+|.+ .+|.....+....|. ++.+...+.+++..+|.+..+|...+.+....
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC----
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcccccc
Confidence 88 4899999999999999986 899999998888888 69999999999999999999999999888776
Q ss_pred ------CCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCc
Q 039282 208 ------GEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKD 281 (476)
Q Consensus 208 ------g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~ 281 (476)
+.++++.+.+.++|.. .| .+...|.-..-+.... .|. .
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~-~P--------~d~SaW~Y~r~ll~~~-----------~~~-~--------------- 244 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFT-DP--------NDQSAWFYHRWLLGAG-----------SGR-C--------------- 244 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHH-ST--------TCHHHHHHHHHHHHSS-----------SCG-G---------------
T ss_pred ccccchHHHHHHHHHHHHHHHh-CC--------CCHHHHHHHHHHHHhc-----------cCc-c---------------
Confidence 4588999999999999 88 5555664332222211 110 0
Q ss_pred hhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHH
Q 039282 282 KAYIHFEKSQGERERRRALYERLVERTKHLKVWIS 316 (476)
Q Consensus 282 ~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~ 316 (476)
... ....+.++++++.+.++++..|+. .|.-
T Consensus 245 -~~~--~~~~~~l~~el~~~~elle~~pd~-~w~l 275 (331)
T 3dss_A 245 -ELS--VEKSTVLQSELESCKELQELEPEN-KWCL 275 (331)
T ss_dssp -GCC--HHHHHHHHHHHHHHHHHHHHCTTC-HHHH
T ss_pred -ccc--hHHHHHHHHHHHHHHHHHhhCccc-chHH
Confidence 000 113456789999999999999943 4553
No 102
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.50 E-value=1.6e-11 Score=121.33 Aligned_cols=253 Identities=11% Similarity=0.055 Sum_probs=193.4
Q ss_pred HHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHH
Q 039282 42 LHKRNDFEDSIRRVPGDTA-----VWINYAKWEGSQNEFDRARSMWELALEEDCRNH------TLWCKYAEFEMINKFIN 110 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~-----~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~------~lw~~y~~~e~~~~~~~ 110 (476)
..|...+++++...|.+.. .+..++.++...|+++.|+..+++++.+.|... ..+..++.++...|+++
T Consensus 31 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 110 (373)
T 1hz4_A 31 DEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQ 110 (373)
T ss_dssp HHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHH
Confidence 4788999999998876532 567788888999999999999999998765432 33567888999999999
Q ss_pred HHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHhhhH
Q 039282 111 HARNVWDRAVAVL--------PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD------QQAWLSYIKFELRYEQV 176 (476)
Q Consensus 111 ~A~~~~~ral~~~--------p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~------~~~w~~~~~~~~~~g~~ 176 (476)
.|...|++++... |....++..++.++...|+++.|+..+++++...|. ...+..++.++...|++
T Consensus 111 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 190 (373)
T 1hz4_A 111 TAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDL 190 (373)
T ss_dssp HHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCH
Confidence 9999999999875 334567778899999999999999999999998774 24677888899999999
Q ss_pred HHHHHHHHHHHHhCCC--CHHHHHH-----HHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCCh-hhHHHHHHHHHHHHH
Q 039282 177 ELARQVFERLVQCHPN--VVSSWIK-----YAKFEMRRGEIDRARNVYERALEKKLADGDGDDD-EGAEQLFVAFAEFEE 248 (476)
Q Consensus 177 ~~A~~~~~r~l~~~p~--~~~~w~~-----~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~-~~~~~l~~~~a~~e~ 248 (476)
++|...+++++...+. .+..|.. .+.++...|+++.|...+++++.. .+ .. ......+...+.++.
T Consensus 191 ~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~-----~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 191 DNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EF-----ANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CC-----TTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CC-----CcchhhHHHHHHHHHHHH
Confidence 9999999999876433 2223332 334577899999999999999876 44 11 122335677888899
Q ss_pred HccchhHH--HHHHH------hCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC
Q 039282 249 RYKESESE--ALRKE------FGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK 309 (476)
Q Consensus 249 ~~~~~e~A--~~ek~------~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~ 309 (476)
..|++++| .+++. .|.......+.. ..+..+...|++++|+..|++++...+
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~---------~la~~~~~~g~~~~A~~~l~~al~~~~ 324 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLL---------LLNQLYWQAGRKSDAQRVLLDALKLAN 324 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHH---------HHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence 99999988 33332 222222222222 456777899999999999999988754
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.48 E-value=7.4e-12 Score=115.03 Aligned_cols=171 Identities=13% Similarity=0.086 Sum_probs=141.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH----HHHH
Q 039282 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ----QAWL 164 (476)
Q Consensus 92 ~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~----~~w~ 164 (476)
++..++..+..+...|+++.|...|++++...|.+ ...++.++.++...|+++.|+..|+++++..|++ .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46778899999999999999999999999999976 4789999999999999999999999999999985 3565
Q ss_pred HHHHHHHH------------------hhhHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCC
Q 039282 165 SYIKFELR------------------YEQVELARQVFERLVQCHPNVVSSW-----------------IKYAKFEMRRGE 209 (476)
Q Consensus 165 ~~~~~~~~------------------~g~~~~A~~~~~r~l~~~p~~~~~w-----------------~~~a~~~~~~g~ 209 (476)
..+..+.. .|++++|...|++++..+|+++.++ ..++.++...|+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~ 162 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGA 162 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 55655543 5799999999999999999987665 567888899999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHH
Q 039282 210 IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEK 289 (476)
Q Consensus 210 ~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~ 289 (476)
++.|...|+++++. .| +.......+.. .+..+.
T Consensus 163 ~~~A~~~~~~~l~~-~p-----~~~~~~~a~~~-----------------------------------------l~~~~~ 195 (225)
T 2yhc_A 163 WVAVVNRVEGMLRD-YP-----DTQATRDALPL-----------------------------------------MENAYR 195 (225)
T ss_dssp HHHHHHHHHHHHHH-ST-----TSHHHHHHHHH-----------------------------------------HHHHHH
T ss_pred HHHHHHHHHHHHHH-Cc-----CCCccHHHHHH-----------------------------------------HHHHHH
Confidence 99999999999999 88 32222223322 334455
Q ss_pred HcCCHHHHHHHHHHHHhccC
Q 039282 290 SQGERERRRALYERLVERTK 309 (476)
Q Consensus 290 ~~g~~e~Ar~l~e~~l~~~~ 309 (476)
+.|+++.|+..|+++....|
T Consensus 196 ~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 196 QMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HTTCHHHHHHHHHHHHHCCS
T ss_pred HcCCcHHHHHHHHHHHhhCC
Confidence 78999999999998887776
No 104
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.48 E-value=2.6e-12 Score=122.99 Aligned_cols=162 Identities=12% Similarity=-0.061 Sum_probs=145.3
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHH
Q 039282 88 EDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI 167 (476)
Q Consensus 88 ~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~ 167 (476)
..|.+...++..+..+...|+++.|...|++++...|+++.+++.++.++...|+++.|+..|++++...|+...+....
T Consensus 112 ~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 112 VLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp HSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred HcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 44999999999999999999999999999999999999999999999999999999999999999999999875443333
Q ss_pred -HHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHH
Q 039282 168 -KFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEF 246 (476)
Q Consensus 168 -~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~ 246 (476)
..+...+..+.|...|++++..+|+++.+++.++.++...|++++|...|.+++.. .| + ......+..++.+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~-~p-----~-~~~~~a~~~l~~~ 264 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX-DL-----T-AADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CT-----T-GGGGHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-cc-----c-cccchHHHHHHHH
Confidence 34567788888999999999999999999999999999999999999999999999 77 2 2336788899999
Q ss_pred HHHccchhHH
Q 039282 247 EERYKESESE 256 (476)
Q Consensus 247 e~~~~~~e~A 256 (476)
+...|..+.|
T Consensus 265 ~~~~g~~~~a 274 (287)
T 3qou_A 265 LAALGTGDAL 274 (287)
T ss_dssp HHHHCTTCHH
T ss_pred HHHcCCCCcH
Confidence 9988887776
No 105
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.48 E-value=6.2e-13 Score=127.51 Aligned_cols=184 Identities=10% Similarity=0.039 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHc-CC
Q 039282 42 LHKRNDFEDSIRRVPG------DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN------HTLWCKYAEFEMIN-KF 108 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~------~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~------~~lw~~y~~~e~~~-~~ 108 (476)
..|...|++++...+. ...+|..+|.++...|++++|+..|++|+.+.|.. ...|..++.++... |+
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~ 133 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHD 133 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 3777888888776432 25789999999999999999999999999988754 56899999999996 99
Q ss_pred HHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHhh
Q 039282 109 INHARNVWDRAVAVLPHV------DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ--------QAWLSYIKFELRYE 174 (476)
Q Consensus 109 ~~~A~~~~~ral~~~p~~------~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~--------~~w~~~~~~~~~~g 174 (476)
++.|...|++|+.+.|.. ..++..++.++...|+++.|+..|++++...|.. ..+...+..+...|
T Consensus 134 ~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g 213 (292)
T 1qqe_A 134 YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAAT 213 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcC
Confidence 999999999999998753 4678999999999999999999999999998864 25778888899999
Q ss_pred hHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHH--HcCCHHHHHHHHHHHHHhhcC
Q 039282 175 QVELARQVFERLVQCHPNVVSS-----WIKYAKFEM--RRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 175 ~~~~A~~~~~r~l~~~p~~~~~-----w~~~a~~~~--~~g~~~~A~~~~e~al~~~~p 226 (476)
+++.|+..|++++...|+.... +..++..+. ..++++.|...|++++.. .|
T Consensus 214 ~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l-~~ 271 (292)
T 1qqe_A 214 DAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL-DK 271 (292)
T ss_dssp CHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC-CH
T ss_pred CHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc-HH
Confidence 9999999999999999985543 444555443 346789999999888776 44
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=2.4e-13 Score=119.93 Aligned_cols=146 Identities=10% Similarity=0.016 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEM-INKFINHARNVWDRAV 120 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~-~~~~~~~A~~~~~ral 120 (476)
..|...|++++..+|.+..+|..+|.++...|++++|+..|++++..+| ++.++...+.+.. ..+....|...|++++
T Consensus 23 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 101 (176)
T 2r5s_A 23 AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQEL 101 (176)
T ss_dssp HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 4899999999999999999999999999999999999999999999999 8877766665433 2233345799999999
Q ss_pred HhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039282 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ---QAWLSYIKFELRYEQVELARQVFERLVQ 188 (476)
Q Consensus 121 ~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~---~~w~~~~~~~~~~g~~~~A~~~~~r~l~ 188 (476)
...|+++.+|+.++.++...|+++.|+..|++++..+|+. .+|..++.++...|+.+.|...|++++.
T Consensus 102 ~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 102 AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999973 5899999999999999999999999875
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.47 E-value=3.6e-13 Score=115.56 Aligned_cols=115 Identities=6% Similarity=-0.061 Sum_probs=103.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 039282 46 NDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH 125 (476)
Q Consensus 46 ~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~ 125 (476)
..|++++..+|.+...|..+|..+...|++++|...|++++..+|.++.+|..++.++...|+++.|...|++++...|+
T Consensus 8 ~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~ 87 (148)
T 2vgx_A 8 GTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87 (148)
T ss_dssp CSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 126 VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 126 ~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
++.+|+.++.++...|+++.|+..|++++...|++
T Consensus 88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 88 EPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 99999999999999999999999999998888763
No 108
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.47 E-value=2.8e-13 Score=115.13 Aligned_cols=115 Identities=7% Similarity=-0.030 Sum_probs=105.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 039282 46 NDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH 125 (476)
Q Consensus 46 ~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~ 125 (476)
..|++++..+|.+...|..+|..+...|++++|+..|++++..+|.++.+|..++.++...|+++.|...|++++...|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 56788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 126 VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 126 ~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
++.+|+.++.++...|+++.|+..|++++...|++
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999988864
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.45 E-value=1.1e-13 Score=119.19 Aligned_cols=114 Identities=11% Similarity=-0.060 Sum_probs=102.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 039282 80 SMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 80 ~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~ 159 (476)
..|++++.++|+++..|+.++..+...|+++.|...|++++...|.++.+|..++.++...|+++.|+..|++++..+|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 45777888899999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred H-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Q 039282 160 Q-QAWLSYIKFELRYEQVELARQVFERLVQCHPNV 193 (476)
Q Consensus 160 ~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~ 193 (476)
+ .+|..++..+...|++++|...|++++...|+.
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCH
Confidence 6 888889999999999999999999999988883
No 110
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.45 E-value=6.4e-12 Score=103.65 Aligned_cols=132 Identities=16% Similarity=0.317 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELR 172 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~ 172 (476)
.+|..++..+...|+++.|..+|++++...|.+...|..++.++...|+++.|...|++++...|.. ..|..++..+..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4688899999999999999999999999999999999999999999999999999999999999875 789999999999
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 173 YEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 173 ~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.|++++|..+|++++...|.++.+|..++.++...|+++.|...|++++.. .|
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~ 134 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-DP 134 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-ST
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc-CC
Confidence 999999999999999999999999999999999999999999999999988 66
No 111
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.44 E-value=1.1e-12 Score=125.28 Aligned_cols=166 Identities=10% Similarity=-0.021 Sum_probs=127.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIR 135 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~ 135 (476)
|.+...|..+|..+...|++++|+..|++++..+|.++.+|..++.++...|+++.|...|++++...|++..+|+.++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 56677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCH------HHHHH--------------------------HHHHHHHhhhHHHHHHHH
Q 039282 136 MEEIAGNVAAARLIFDRWMHWTPDQ------QAWLS--------------------------YIKFELRYEQVELARQVF 183 (476)
Q Consensus 136 ~~~~~g~~~~A~~~~eral~~~P~~------~~w~~--------------------------~~~~~~~~g~~~~A~~~~ 183 (476)
++...|+++.|...|++++...|++ .+|.. +..+ ..|++++|...|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~ 158 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEEC 158 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHH
Confidence 8888888888888888888877642 22221 1111 246777888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 039282 184 ERLVQCHPNVVSSWIKYAKFEMRR-GEIDRARNVYERALEK 223 (476)
Q Consensus 184 ~r~l~~~p~~~~~w~~~a~~~~~~-g~~~~A~~~~e~al~~ 223 (476)
++++...|++..+...+..++... +.+++|..+|.++.+.
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp SGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888887666666666666555 5677788888877654
No 112
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.44 E-value=5.1e-12 Score=122.95 Aligned_cols=214 Identities=10% Similarity=-0.005 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQN-EFDRARSMWELALEEDCRNHTLWCKYAEFEMIN-K-FINHARNVWDR 118 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~-~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~-~-~~~~A~~~~~r 118 (476)
.+|...++++|..||.+..+|..-+.+....| +++++...++.+|..+|++..+|..-+.+.... + +++.+..++++
T Consensus 71 e~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k 150 (349)
T 3q7a_A 71 ERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG 150 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 57999999999999999999999999999998 599999999999999999999999999988887 7 89999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHH--------HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhh-------HHHHHHH
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVA--------AARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQ-------VELARQV 182 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~--------~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~-------~~~A~~~ 182 (476)
++..+|++..+|.....+....|.++ .+...+++++..+|.+ .+|.....+....+. ++++...
T Consensus 151 ~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~ 230 (349)
T 3q7a_A 151 SLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIY 230 (349)
T ss_dssp HTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 99999999999999999988877766 8999999999999976 899999988888775 7999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHH-----------------HHHHHHHHHHHhhcCCC-CCCChhhHHHHHHHHH
Q 039282 183 FERLVQCHPNVVSSWIKYAKFEMRRGEID-----------------RARNVYERALEKKLADG-DGDDDEGAEQLFVAFA 244 (476)
Q Consensus 183 ~~r~l~~~p~~~~~w~~~a~~~~~~g~~~-----------------~A~~~~e~al~~~~p~~-~~~~~~~~~~l~~~~a 244 (476)
+.+++..+|++..+|..+..++...|... ..-.+-+.|++. .... .......+.-.+...+
T Consensus 231 ~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~al~~l~ 309 (349)
T 3q7a_A 231 ILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM-PSDPLPEDTPLPVPLALEYLA 309 (349)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC-CC-CCCSSCCSCCHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH-HhcccccccCCCcHHHHHHHH
Confidence 99999999999999999888888776530 011233333333 2200 0001123455666677
Q ss_pred HHHHHccchhHH
Q 039282 245 EFEERYKESESE 256 (476)
Q Consensus 245 ~~e~~~~~~e~A 256 (476)
..+...|+.++|
T Consensus 310 d~~~~~~~~~~a 321 (349)
T 3q7a_A 310 DSFIEQNRVDDA 321 (349)
T ss_dssp HHHHHTTCHHHH
T ss_pred HHHHhcCCHHHH
Confidence 777777776666
No 113
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.44 E-value=5.3e-13 Score=114.54 Aligned_cols=120 Identities=8% Similarity=-0.070 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 039282 77 RARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW 156 (476)
Q Consensus 77 ~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~ 156 (476)
.+...|++++.++|.++..|+.++..+...|+++.|...|++++...|.++.+|+.++.++...|+++.|+..|++++..
T Consensus 5 ~~~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 5 SGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp -CCCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34456888888899999999999999999999999999999999999999999999999998899999999999998888
Q ss_pred CCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH
Q 039282 157 TPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSS 196 (476)
Q Consensus 157 ~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~ 196 (476)
+|++ .+|..++..+...|++++|...|++++...|+++..
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 8875 778888888888888888888888888888876544
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.42 E-value=8e-13 Score=129.57 Aligned_cols=152 Identities=8% Similarity=0.056 Sum_probs=112.6
Q ss_pred HhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHH
Q 039282 36 ELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN---------------HTLWCKYA 100 (476)
Q Consensus 36 el~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---------------~~lw~~y~ 100 (476)
+|.++. +|...|++++..+|.+...|..+|..+...|++++|+..|++++.++|.+ ..+|..++
T Consensus 125 ~L~~~~-~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 203 (336)
T 1p5q_A 125 HLKSFE-KAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLA 203 (336)
T ss_dssp EEEEEE-CCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred EEeecc-cccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHH
Confidence 444454 66677777777788888888888888888888888888888888888887 57777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHH
Q 039282 101 EFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELA 179 (476)
Q Consensus 101 ~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A 179 (476)
.++...|+++.|...|++++.+.|.+..+|+.++.++...|+++.|+..|++++..+|++ .++..++.++...|++++|
T Consensus 204 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 204 MCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777777777777777654 5566666666666666665
Q ss_pred -HHHHHHHHH
Q 039282 180 -RQVFERLVQ 188 (476)
Q Consensus 180 -~~~~~r~l~ 188 (476)
+..|.+++.
T Consensus 284 ~~~~~~~~~~ 293 (336)
T 1p5q_A 284 EKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 445555543
No 115
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.41 E-value=2e-11 Score=105.23 Aligned_cols=131 Identities=13% Similarity=0.030 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEE 138 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~ 138 (476)
...|..+|..+...|+++.|...|++++..+|.++.+|..++.++...|+++.|...|++++...|.+..+|..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999999999999999999998999999999998
Q ss_pred HhCCHHHHHHHHHHHHhcCCCH-HHHH--HHHHHHHHhhhHHHHHHHHHHHHHh
Q 039282 139 IAGNVAAARLIFDRWMHWTPDQ-QAWL--SYIKFELRYEQVELARQVFERLVQC 189 (476)
Q Consensus 139 ~~g~~~~A~~~~eral~~~P~~-~~w~--~~~~~~~~~g~~~~A~~~~~r~l~~ 189 (476)
..|+++.|+..|++++...|.+ .+|. ..+..+...|++++|...+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999988888865 4453 3333456677777877777776543
No 116
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.41 E-value=5.8e-12 Score=110.75 Aligned_cols=119 Identities=17% Similarity=0.186 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEF-EMINKFI--NHARNVWDR 118 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~-e~~~~~~--~~A~~~~~r 118 (476)
..|...|++++..+|.+...|..+|.++...|+++.|+..|++++..+|.++.+|..++.+ +...|++ +.|...|++
T Consensus 27 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~ 106 (177)
T 2e2e_A 27 EAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDK 106 (177)
T ss_dssp CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 4788999999999999999999999999999999999999999999999999999999999 7788998 999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
++...|.+..+|..++.++...|+++.|...|++++...|++
T Consensus 107 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 107 ALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999975
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.41 E-value=5.3e-13 Score=125.86 Aligned_cols=183 Identities=9% Similarity=-0.083 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHhCCCHHHHHHHHHHHHHhcCCC---------------------H
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINY-------AKWEGSQNEFDRARSMWELALEEDCRN---------------------H 93 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~-------a~~~~~~~~~~~A~~~~eral~~~p~~---------------------~ 93 (476)
..|+..|.+++..+|...+.|+.+ +..+...+....+.-.+.+++.+.|.. .
T Consensus 23 ~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~ 102 (282)
T 4f3v_A 23 ARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPL 102 (282)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHH
T ss_pred HHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHh
Confidence 489999999999999999999999 778887777888889999999877664 3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHH
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD---QQAWLSYIKFE 170 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~---~~~w~~~~~~~ 170 (476)
.+++.|+.++...|+++.|..+|+.++...|... .++..+.++...++++.|+..|+.++.+.+. ..++..++..+
T Consensus 103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 5667799999999999999999999999999877 8999999999999999999999988876433 35899999999
Q ss_pred HHhhhHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 171 LRYEQVELARQVFERLVQCH--PN-VVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 171 ~~~g~~~~A~~~~~r~l~~~--p~-~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.+.|++++|...|++++... |. .+++++..+..+.+.|+.++|+.+|++++.. .|
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~-~P 239 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT-HP 239 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-SC
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CC
Confidence 99999999999999998644 54 5679999999999999999999999999999 88
No 118
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.41 E-value=3.9e-11 Score=109.25 Aligned_cols=173 Identities=12% Similarity=-0.015 Sum_probs=155.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINK----FINHARNVWDR 118 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~----~~~~A~~~~~r 118 (476)
.|...|+++... .++..+..++.++...+++++|+..|++++. +.++..+..++.++.. + +++.|...|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAA--QGDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 466788888874 7899999999999999999999999999987 4689999999999887 6 89999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHH----hhhHHHHHHHHHHHH
Q 039282 119 AVAVLPHVDQLWYKYIRMEEI----AGNVAAARLIFDRWMHWTPD---QQAWLSYIKFELR----YEQVELARQVFERLV 187 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~----~g~~~~A~~~~eral~~~P~---~~~w~~~~~~~~~----~g~~~~A~~~~~r~l 187 (476)
+.. +.++..++.++.++.. .++++.|+..|++++...|. ...+..++.++.. .+++++|...|++++
T Consensus 79 A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 79 AVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 975 5689999999999987 78999999999999999985 5889999999988 789999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHh
Q 039282 188 QCHPNVVSSWIKYAKFEMRR-G-----EIDRARNVYERALEK 223 (476)
Q Consensus 188 ~~~p~~~~~w~~~a~~~~~~-g-----~~~~A~~~~e~al~~ 223 (476)
.. |.++.++..++.++..- | ++++|...|+++++.
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 98 66688999999998764 3 899999999999998
No 119
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.40 E-value=4.2e-13 Score=131.55 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=156.6
Q ss_pred HHHHHHHH----HHHhCCCCHHHHHHHHHHH------------HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q 039282 43 HKRNDFED----SIRRVPGDTAVWINYAKWE------------GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMIN 106 (476)
Q Consensus 43 ~a~~~~e~----~l~~~p~~~~~w~~~a~~~------------~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~ 106 (476)
.|...+.. ++...|.. .|...+... ...+++++|...|++++..+|.++..|..++..+...
T Consensus 83 ~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~ 160 (336)
T 1p5q_A 83 RAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKE 160 (336)
T ss_dssp HHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHC
Confidence 55555655 56666654 333333222 1446677899999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Q 039282 107 KFINHARNVWDRAVAVLPHV---------------DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFE 170 (476)
Q Consensus 107 ~~~~~A~~~~~ral~~~p~~---------------~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~ 170 (476)
|+++.|...|++++...|.+ ..+|..++.++...|+++.|+..|++++..+|++ .+|..++..+
T Consensus 161 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 240 (336)
T 1p5q_A 161 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAH 240 (336)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 99999999999999999998 6999999999999999999999999999999975 8899999999
Q ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 039282 171 LRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRA-RNVYERALEK 223 (476)
Q Consensus 171 ~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A-~~~~e~al~~ 223 (476)
...|++++|+..|++++...|++..++..++.++...|+.++| +..|.+++..
T Consensus 241 ~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 241 LAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988 6788888776
No 120
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.40 E-value=1.2e-12 Score=111.19 Aligned_cols=119 Identities=5% Similarity=-0.105 Sum_probs=103.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 039282 80 SMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 80 ~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~ 159 (476)
..|++++.++|.++..++.++..+...|+++.|...|++++...|.+..+|..++.++...|+++.|...|++++..+|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 57788888999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred H-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 039282 160 Q-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWI 198 (476)
Q Consensus 160 ~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~ 198 (476)
+ .+|..++..+...|++++|...|++++...|+++..+.
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 6 77888889999999999999999999998887665543
No 121
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.39 E-value=1.1e-11 Score=102.38 Aligned_cols=102 Identities=9% Similarity=-0.067 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIR 135 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~ 135 (476)
|.+...|...|..+...|++++|+..|++++..+|.++.+|..++.++...|+++.|...|++++...|.+...|+.++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhcC
Q 039282 136 MEEIAGNVAAARLIFDRWMHWT 157 (476)
Q Consensus 136 ~~~~~g~~~~A~~~~eral~~~ 157 (476)
++...|+++.|+..|++++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.39 E-value=1e-11 Score=130.02 Aligned_cols=175 Identities=10% Similarity=0.001 Sum_probs=161.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC
Q 039282 38 YDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNE----------FDRARSMWELALEEDCRNHTLWCKYAEFEMINK 107 (476)
Q Consensus 38 ~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~----------~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~ 107 (476)
.++..+|...++++|..+|.+..+|..-+.+....|+ ++++...+++++..+|++..+|..-+.+....+
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 4445688999999999999999999999999988877 999999999999999999999999999999999
Q ss_pred --CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHh----------
Q 039282 108 --FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG-NVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRY---------- 173 (476)
Q Consensus 108 --~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g-~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~---------- 173 (476)
+++++...+++++..+|++..+|...+.+....| .++++...+.++++.+|.+ .+|...+.+....
T Consensus 122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 7799999999999999999999999999999999 8999999999999999986 8999998887764
Q ss_pred ----hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q 039282 174 ----EQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDR 212 (476)
Q Consensus 174 ----g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~ 212 (476)
+.++++.+.+.+++..+|++..+|..+..++...|..++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 778999999999999999999999999988887776444
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.38 E-value=4.4e-12 Score=111.54 Aligned_cols=128 Identities=10% Similarity=0.139 Sum_probs=113.6
Q ss_pred HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH-HHHhCCH--HHH
Q 039282 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRM-EEIAGNV--AAA 146 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~-~~~~g~~--~~A 146 (476)
...|++++|+..|++++..+|.++.+|..++.++...|+++.|...|++++...|.++.+|..++.+ +...|++ +.|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3468899999999999999999999999999999999999999999999999999999999999999 7788998 999
Q ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Q 039282 147 RLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSW 197 (476)
Q Consensus 147 ~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w 197 (476)
+..|++++..+|.+ .+|..++.++...|++++|...|++++...|+++...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999975 7889999999999999999999999999999865443
No 124
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.37 E-value=1.2e-10 Score=118.75 Aligned_cols=171 Identities=9% Similarity=0.105 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-----CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC--------
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQN-----EFDRARSMWELALEEDCRNHTLWCKYAEFEMINKF-------- 108 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~-----~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~-------- 108 (476)
.+|...|++++.. ++..+..++.++...+ ++++|...|++++.. .++.++..++.++...+.
T Consensus 55 ~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~~~~~~~~~~a~ 129 (452)
T 3e4b_A 55 KQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNTLIPLAMLYLQYPHSFPNVNAQ 129 (452)
T ss_dssp -------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSCHHHHHHHHHHCGGGCTTCCHH
T ss_pred HHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 4778888888755 6677788888555544 778888888888774 334456666666554433
Q ss_pred -------------------------------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC---CHHHHHHHHHHHH
Q 039282 109 -------------------------------INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG---NVAAARLIFDRWM 154 (476)
Q Consensus 109 -------------------------------~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g---~~~~A~~~~eral 154 (476)
...|..++..+....| ..++.++.++...| +.+.|...|+++.
T Consensus 130 ~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~---~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa 206 (452)
T 3e4b_A 130 QQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD---ICYVELATVYQKKQQPEQQAELLKQMEAGV 206 (452)
T ss_dssp HHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---THHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCcccHHHHHHHHHHHH
Confidence 2222223333322222 24455555555555 5555555555555
Q ss_pred hcCCCH-HHHHHHHHHHHHh----hhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHh
Q 039282 155 HWTPDQ-QAWLSYIKFELRY----EQVELARQVFERLVQCHPNVVSSWIKYAKF-E--MRRGEIDRARNVYERALEK 223 (476)
Q Consensus 155 ~~~P~~-~~w~~~~~~~~~~----g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~-~--~~~g~~~~A~~~~e~al~~ 223 (476)
...|.. ..+..++.++... +++++|...|+++. |+++.++..++.+ + ...|++++|...|+++++.
T Consensus 207 ~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 207 SRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp HTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 554443 3334444444332 34555555555554 4445555555554 2 2345555555555555544
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.37 E-value=1.3e-11 Score=102.15 Aligned_cols=120 Identities=10% Similarity=0.041 Sum_probs=102.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYI 134 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~ 134 (476)
.|.+...|..+|..+...|+++.|...|++++..+|.+..+|..++.++...|+++.|...|++++...|.+..+|..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 46678889999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhh
Q 039282 135 RMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYE 174 (476)
Q Consensus 135 ~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g 174 (476)
.++...|+++.|+..|++++...|.. .+|..++.++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 88888888888888888888888765 56666666655544
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.35 E-value=1.1e-11 Score=101.79 Aligned_cols=121 Identities=13% Similarity=0.087 Sum_probs=94.8
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYI 134 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~ 134 (476)
+|.+...|..+|..+...|+++.|...|++++..+|.++.+|..++.++...|+++.|...|++++...|.+..+|..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 45566778888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhh
Q 039282 135 RMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQ 175 (476)
Q Consensus 135 ~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~ 175 (476)
.++...|+++.|...|++++...|.. .+|..++.++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 88877788777777777777777753 556666666655554
No 127
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.35 E-value=3e-11 Score=100.99 Aligned_cols=120 Identities=7% Similarity=-0.095 Sum_probs=106.2
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 039282 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYK 132 (476)
Q Consensus 53 ~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~ 132 (476)
..+|.+...|..+|..+...|+++.|...|++++..+|.++.+|..++.++...|+++.|...|++++...|.+..+|+.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC-----H-HHHHHHHHHHHH
Q 039282 133 YIRMEEIAGNVAAARLIFDRWMHWTPD-----Q-QAWLSYIKFELR 172 (476)
Q Consensus 133 ~~~~~~~~g~~~~A~~~~eral~~~P~-----~-~~w~~~~~~~~~ 172 (476)
++.++...|+++.|+..|.+++...|+ . .++..+.....+
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876 2 455555444433
No 128
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.33 E-value=4.5e-11 Score=118.66 Aligned_cols=205 Identities=10% Similarity=-0.061 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHhCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCC
Q 039282 42 LHKRNDFEDSIRRVP------GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCR-------NHTLWCKYAEFEMINKF 108 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p------~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~-------~~~lw~~y~~~e~~~~~ 108 (476)
..|...|++++...+ ....++..+|.++...|+++.|...|++|+.+.+. ....+..+|.++...|+
T Consensus 118 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~ 197 (378)
T 3q15_A 118 VEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH 197 (378)
T ss_dssp HHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCC
Confidence 489999999987632 24568899999999999999999999999987553 24578899999999999
Q ss_pred HHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-----cCCCH-HHHHHHHHHHHHhhhH
Q 039282 109 INHARNVWDRAVAVLPH------VDQLWYKYIRMEEIAGNVAAARLIFDRWMH-----WTPDQ-QAWLSYIKFELRYEQV 176 (476)
Q Consensus 109 ~~~A~~~~~ral~~~p~------~~~lw~~~~~~~~~~g~~~~A~~~~eral~-----~~P~~-~~w~~~~~~~~~~g~~ 176 (476)
++.|...|++++...+. ...++..++.++...|+++.|...|++++. .+|.. .++..++..+...|++
T Consensus 198 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~ 277 (378)
T 3q15_A 198 YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQT 277 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCH
Confidence 99999999999987432 346788999999999999999999999998 66654 6788899999999999
Q ss_pred HHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHH
Q 039282 177 ELARQVFERLVQCHPN-----VVSSWIKYAKFEMRRGE---IDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEE 248 (476)
Q Consensus 177 ~~A~~~~~r~l~~~p~-----~~~~w~~~a~~~~~~g~---~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~ 248 (476)
++|...|++++...+. ....+..++.++...|+ +.+|...+++.- .......++...+.++.
T Consensus 278 ~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~----------~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 278 QKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN----------LHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC----------ChhHHHHHHHHHHHHHH
Confidence 9999999999998543 23445566667777788 666666666521 12245567788999999
Q ss_pred HccchhHH
Q 039282 249 RYKESESE 256 (476)
Q Consensus 249 ~~~~~e~A 256 (476)
..|+++.|
T Consensus 348 ~~g~~~~A 355 (378)
T 3q15_A 348 SSCHFEQA 355 (378)
T ss_dssp HTTCHHHH
T ss_pred HCCCHHHH
Confidence 99999998
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.33 E-value=8.3e-11 Score=95.66 Aligned_cols=117 Identities=19% Similarity=0.288 Sum_probs=90.5
Q ss_pred CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 039282 55 VPGD-TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKY 133 (476)
Q Consensus 55 ~p~~-~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~ 133 (476)
+|.+ ...|..+|..+...|+++.|...|++++..+|.++.+|..++.++...|+++.|..+|++++...|.+..+|..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4555 678888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Q 039282 134 IRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFEL 171 (476)
Q Consensus 134 ~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~ 171 (476)
+.++...|+++.|...|++++...|.. .++..++..+.
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 888888888888888777777777754 44554444443
No 130
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.33 E-value=4e-11 Score=104.12 Aligned_cols=106 Identities=11% Similarity=0.053 Sum_probs=99.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYI 134 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~ 134 (476)
++.+...|..+|..+...|++++|+..|++++.++|.++.+|..++.++...|+++.|...|++++...|.+..+|+.++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 135 RMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 135 ~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
.++...|+++.|+..|++++..+|++
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~ 112 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNG 112 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999876
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.32 E-value=8e-11 Score=101.42 Aligned_cols=132 Identities=12% Similarity=0.027 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Q 039282 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFE 170 (476)
Q Consensus 92 ~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~ 170 (476)
.+..|...+..+...|+++.|...|++++...|.+..+|..++.++...|+++.|...|.+++...|.. .+|..++..+
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 357799999999999999999999999999999999999999999999999999999999999999975 7899999999
Q ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 039282 171 LRYEQVELARQVFERLVQCHPNVVSSWIKY--AKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 171 ~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~--a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
...|++++|...|++++..+|++..++..+ +..+...|++++|...+.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 999999999999999999999999888554 44477889999999999988765
No 132
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.32 E-value=2.1e-11 Score=100.58 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEI 139 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~ 139 (476)
..|+..|..+...|++++|+..|++++..+|.++.+|..++.++...|+++.|...|++++.+.|++...|..++.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHhcCCCH
Q 039282 140 AGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 140 ~g~~~~A~~~~eral~~~P~~ 160 (476)
.|+++.|+..|++++..+|..
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHHHHHhCcCC
Confidence 999999999999999988864
No 133
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.31 E-value=1.7e-11 Score=115.49 Aligned_cols=206 Identities=11% Similarity=-0.053 Sum_probs=165.1
Q ss_pred hCCCHHHHHHHHHHHHHhcCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHhCCCc-----------------
Q 039282 71 SQNEFDRARSMWELALEEDCRNHTLWCKY-------AEFEMINKFINHARNVWDRAVAVLPHV----------------- 126 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~~p~~~~lw~~y-------~~~e~~~~~~~~A~~~~~ral~~~p~~----------------- 126 (476)
..++...|+..|.+++.++|.....|+.+ +.++...+....+...+.+++.+.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 46899999999999999999999999999 788888888888889999999977752
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--CHHHHHHH
Q 039282 127 ----DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPN--VVSSWIKY 200 (476)
Q Consensus 127 ----~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~--~~~~w~~~ 200 (476)
..++..|+.++...|++++|+.+|+..+...|+.......+..+.+.++++.|...|+.++...+. ...+++.+
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L 177 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH 177 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH
Confidence 567777999999999999999999999988887667777788889999999999999977654211 13578999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhc-CCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCC
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKL-ADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAP 279 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~-p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p 279 (476)
+..+...|++++|...|++++.... | . .....+.
T Consensus 178 G~al~~LG~~~eAl~~l~~a~~g~~~P-----~--~~~da~~-------------------------------------- 212 (282)
T 4f3v_A 178 GVAAANLALFTEAERRLTEANDSPAGE-----A--CARAIAW-------------------------------------- 212 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSTTTT-----T--THHHHHH--------------------------------------
T ss_pred HHHHHHCCCHHHHHHHHHHHhcCCCCc-----c--ccHHHHH--------------------------------------
Confidence 9999999999999999999986511 3 1 1222222
Q ss_pred CchhhHHHHHHcCCHHHHHHHHHHHHhccCCHHHHHHHHHHHhhc
Q 039282 280 KDKAYIHFEKSQGERERRRALYERLVERTKHLKVWISYAKFEASA 324 (476)
Q Consensus 280 ~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~~~~vw~~~a~~e~~~ 324 (476)
..+..+.++|+.++|+.+|++++...|...+|..+..-....
T Consensus 213 ---~~glaL~~lGr~deA~~~l~~a~a~~P~~~~~~aL~~~~~~~ 254 (282)
T 4f3v_A 213 ---YLAMARRSQGNESAAVALLEWLQTTHPEPKVAAALKDPSYRL 254 (282)
T ss_dssp ---HHHHHHHHHTCHHHHHHHHHHHHHHSCCHHHHHHHHCTTCCC
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHhCCCCCC
Confidence 233445588999999999999999999877777766544433
No 134
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.31 E-value=1.9e-11 Score=101.34 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=91.6
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHH
Q 039282 188 QCHPNVVSSWIKYAKFEMRRGEI------DRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKE 261 (476)
Q Consensus 188 ~~~p~~~~~w~~~a~~~~~~g~~------~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~ 261 (476)
...|++++.|..|+..++..|+. ++.+.+|++|+.. .| +.. ...|..|+.+..
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~P-----p~k--~~~wrrYI~LWI------------- 65 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LP-----PDK--YGQNESFARIQV------------- 65 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SC-----GGG--GTTCHHHHHHHH-------------
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CC-----ccc--cccHHHHHHHHH-------------
Confidence 35699999999999999999999 9999999999999 88 432 334555554322
Q ss_pred hCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC-CHHHHHHHHHHHhhcCCCCCCCCCCchhHHH
Q 039282 262 FGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK-HLKVWISYAKFEASALSKDGGNPDLSEADLC 340 (476)
Q Consensus 262 ~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~-~~~vw~~~a~~e~~~~~~~~~~~~~~~~~~~ 340 (476)
.|+.| ...++.++||.+|..++..+. .+.+|+.||+||.++
T Consensus 66 ---------------------rYA~~-~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRq---------------- 107 (161)
T 4h7y_A 66 ---------------------RFAEL-KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQ---------------- 107 (161)
T ss_dssp ---------------------HHHHH-HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHT----------------
T ss_pred ---------------------HHHHH-HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc----------------
Confidence 34444 245899999999999998876 799999999999999
Q ss_pred HhhHhhHHhhhhhhhHHhHHHHhhhhccCchhHHHHHHHHHhhhc
Q 039282 341 ERKKQSIRGARRSHRKIYHQFATCLISSLSSSGVFEKGINYYKTS 385 (476)
Q Consensus 341 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~r~ifera~~~~~~~ 385 (476)
|++..| |.|+.+|+..++..
T Consensus 108 ----gnl~kA---------------------RkILg~AiG~~~k~ 127 (161)
T 4h7y_A 108 ----GNVKKS---------------------KQLLQKAVERGAVP 127 (161)
T ss_dssp ----TCHHHH---------------------HHHHHHHHHTTCBC
T ss_pred ----ccHHHH---------------------HHHHHHHhccCCCc
Confidence 999999 99999999977654
No 135
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.30 E-value=8.9e-11 Score=94.55 Aligned_cols=112 Identities=13% Similarity=0.059 Sum_probs=95.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRME 137 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~ 137 (476)
....|..+|..+...|+++.|...|++++..+|.++.+|..++.++...|+++.|...+++++...|.+..+|..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35678888898899999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Q 039282 138 EIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKF 169 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~ 169 (476)
...|+++.|+..|++++...|++ .+|..++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 88888888888888888888864 455554443
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.30 E-value=3.8e-11 Score=98.57 Aligned_cols=123 Identities=14% Similarity=0.062 Sum_probs=115.7
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHH
Q 039282 88 EDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSY 166 (476)
Q Consensus 88 ~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~ 166 (476)
.+|.++..|..++..+...|+++.|...|++++...|.+..+|..++.++...|+++.|...|.+++...|.. .+|..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 4566788999999999999999999999999999999999999999999999999999999999999999974 789999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 039282 167 IKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEI 210 (476)
Q Consensus 167 ~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~ 210 (476)
+.++...|++++|...|++++...|+++.++..++.++...|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999888764
No 137
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.30 E-value=4.4e-10 Score=114.58 Aligned_cols=121 Identities=13% Similarity=0.131 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh----CCHHHHHHHHHHHHhcCCC-HHHHHHH
Q 039282 95 LWCKYAEFEMINK---FINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA----GNVAAARLIFDRWMHWTPD-QQAWLSY 166 (476)
Q Consensus 95 lw~~y~~~e~~~~---~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~----g~~~~A~~~~eral~~~P~-~~~w~~~ 166 (476)
.+..++.++...| ++..|...|+++....|.....++.++.++... ++++.|+..|+++. |+ ..++..+
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L 254 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL 254 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence 4444555444444 445555555555555444444444444444332 34455555555544 22 2344444
Q ss_pred HHH-H--HHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHH
Q 039282 167 IKF-E--LRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRG-----EIDRARNVYERAL 221 (476)
Q Consensus 167 ~~~-~--~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g-----~~~~A~~~~e~al 221 (476)
+.+ + ...+++++|...|+++... +++.++..++.++. .| ++++|...|++++
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence 443 2 2344455555555554432 23444555554444 33 4555555555544
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.29 E-value=5.3e-12 Score=113.41 Aligned_cols=136 Identities=13% Similarity=-0.018 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH----------------HHHHHHHHHHHHc
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH----------------TLWCKYAEFEMIN 106 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~----------------~lw~~y~~~e~~~ 106 (476)
++...++......+.....|...|..+...|++++|...|++++...|.++ .+|..++.++...
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~ 101 (198)
T 2fbn_A 22 AKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKN 101 (198)
T ss_dssp CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444433333344455555666666666666666666666666555554 4555555555555
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHH
Q 039282 107 KFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVEL 178 (476)
Q Consensus 107 ~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~ 178 (476)
|+++.|...|++++...|.+..+|+.++.++...|+++.|+..|++++...|++ .++..++.+....++..+
T Consensus 102 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555433 344444444444444333
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.29 E-value=2e-11 Score=116.34 Aligned_cols=103 Identities=12% Similarity=0.012 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 039282 90 CRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIK 168 (476)
Q Consensus 90 p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~ 168 (476)
|.+...|...+..+...|+++.|...|++++...|.+..+|..++.++...|+++.|...|++++..+|++ .+|..++.
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44555666666666666666666666666666666666666666666666666666666666666555543 44455555
Q ss_pred HHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 169 FELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 169 ~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
.+...|++++|...|++++...|+
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~ 104 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE 104 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc
Confidence 555555555555555555554443
No 140
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.28 E-value=7.3e-11 Score=97.46 Aligned_cols=116 Identities=7% Similarity=-0.060 Sum_probs=105.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHH
Q 039282 90 CRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIK 168 (476)
Q Consensus 90 p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~ 168 (476)
|.....|...|..+...|+++.|...|++++...|.+..+|..++.++...|+++.|+..|++++..+|+. .+|..++.
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 80 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 80 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999999999999999985 78999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHH
Q 039282 169 FELRYEQVELARQVFERLVQCH------PNVVSSWIKYAKFEM 205 (476)
Q Consensus 169 ~~~~~g~~~~A~~~~~r~l~~~------p~~~~~w~~~a~~~~ 205 (476)
.+...|++++|...|++++... |++..++..+..+..
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999 887777777766554
No 141
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.28 E-value=5e-11 Score=98.52 Aligned_cols=121 Identities=8% Similarity=-0.016 Sum_probs=113.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Q 039282 89 DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYI 167 (476)
Q Consensus 89 ~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~ 167 (476)
.|.++..|..++..+...|+++.|...|++++...|.+..+|..++.++...|+++.|+..|++++...|.. .+|..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 466789999999999999999999999999999999999999999999999999999999999999999975 8899999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 039282 168 KFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGE 209 (476)
Q Consensus 168 ~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~ 209 (476)
..+...|++++|...|++++...|.+..++..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999887764
No 142
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.28 E-value=4.3e-11 Score=115.49 Aligned_cols=158 Identities=8% Similarity=0.042 Sum_probs=137.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHH
Q 039282 66 AKWEGSQNEFDRARSMWELALEEDCRN------HTLWCKYAEFEMINKFINHARNVWDRAVAVLPH------VDQLWYKY 133 (476)
Q Consensus 66 a~~~~~~~~~~~A~~~~eral~~~p~~------~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~------~~~lw~~~ 133 (476)
+.++...|++++|...|.+++.+.+.. ...+..++.++...|+++.|...|++++.+.+. ....+..+
T Consensus 43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 122 (307)
T 2ifu_A 43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA 122 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 567888999999999999999886543 568889999999999999999999999988543 24678899
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 039282 134 IRMEEIAGNVAAARLIFDRWMHWTPD-------QQAWLSYIKFELRYEQVELARQVFERLVQCHPNV------VSSWIKY 200 (476)
Q Consensus 134 ~~~~~~~g~~~~A~~~~eral~~~P~-------~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~------~~~w~~~ 200 (476)
+.++.. |+++.|+..|++++...|. ..++..++.++...|++++|...|++++...|.+ ..+++..
T Consensus 123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 201 (307)
T 2ifu_A 123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201 (307)
T ss_dssp HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence 999988 9999999999999988763 2578889999999999999999999999987653 2477888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 201 AKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
+.++...|+++.|...|++++ . .|
T Consensus 202 g~~~~~~g~~~~A~~~~~~al-~-~p 225 (307)
T 2ifu_A 202 VLVQLHRADYVAAQKCVRESY-S-IP 225 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHT-T-ST
T ss_pred HHHHHHcCCHHHHHHHHHHHh-C-CC
Confidence 889999999999999999999 8 77
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.28 E-value=1.2e-11 Score=111.08 Aligned_cols=158 Identities=10% Similarity=0.027 Sum_probs=127.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH----------------H
Q 039282 65 YAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD----------------Q 128 (476)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~----------------~ 128 (476)
.+......|++++|...++......+..+..|...+..+...|+++.|...|++++...|.++ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 334445578888888888888877788889999999999999999999999999999999876 8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 039282 129 LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRR 207 (476)
Q Consensus 129 lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~ 207 (476)
+|..++.++...|+++.|+..|++++..+|.. .++..++..+...|+++.|...|++++...|++..++..++.++...
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999975 88999999999999999999999999999999999999999999888
Q ss_pred CCHHHHH-HHHHHHHH
Q 039282 208 GEIDRAR-NVYERALE 222 (476)
Q Consensus 208 g~~~~A~-~~~e~al~ 222 (476)
|+..++. ..|.+...
T Consensus 170 ~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 170 KEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHC-----------
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8777666 44554443
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.28 E-value=1.1e-10 Score=97.19 Aligned_cols=105 Identities=16% Similarity=0.105 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-------HHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD-------QLWY 131 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~-------~lw~ 131 (476)
...|..+|..+..+|++++|+..|++|+.++|+++.+|..++.++...|+++.|...|++++.+.|.+. .++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456788899999999999999999999999999999999999999999999999999999998877642 4666
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHH
Q 039282 132 KYIRMEEIAGNVAAARLIFDRWMHWTPDQQAW 163 (476)
Q Consensus 132 ~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w 163 (476)
.++.++...|+++.|+..|++++...|++...
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~ 119 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPELV 119 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHH
Confidence 67777777777777777777777777776443
No 145
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.28 E-value=2.1e-10 Score=93.16 Aligned_cols=121 Identities=14% Similarity=0.255 Sum_probs=109.4
Q ss_pred hcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHH
Q 039282 88 EDCRN-HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLS 165 (476)
Q Consensus 88 ~~p~~-~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~ 165 (476)
.+|.+ ...|..++..+...|+++.|...|++++...|.+..+|..++.++...|+++.|...|++++...|.. ..|..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 82 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYN 82 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHH
Confidence 35655 78999999999999999999999999999999999999999999999999999999999999999864 78999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 039282 166 YIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRG 208 (476)
Q Consensus 166 ~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g 208 (476)
++..+...|++++|...|++++...|+++.++..++..+...|
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999988877654
No 146
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.27 E-value=2.6e-10 Score=102.88 Aligned_cols=130 Identities=8% Similarity=0.024 Sum_probs=118.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA 140 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~ 140 (476)
.+...|..+...|++++|+..|++++ +| ++.+|..++.++...|+++.|...|++++...|.+..+|+.++.++...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 46678888899999999999999985 34 7899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Q 039282 141 GNVAAARLIFDRWMHWTPDQ-----------------QAWLSYIKFELRYEQVELARQVFERLVQCHPNV 193 (476)
Q Consensus 141 g~~~~A~~~~eral~~~P~~-----------------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~ 193 (476)
|+++.|...|++++...|.+ .+|..++..+...|++++|...|++++...|++
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 99999999999999977752 678889999999999999999999999999984
No 147
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.27 E-value=5.6e-11 Score=98.59 Aligned_cols=107 Identities=12% Similarity=0.135 Sum_probs=89.4
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCH------HHHHHHHHHHHHhcCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 53 RRVPGDTAVWINYAKWEGSQNEF------DRARSMWELALEEDCR--------NHTLWCKYAEFEMINKFINHARNVWDR 118 (476)
Q Consensus 53 ~~~p~~~~~w~~~a~~~~~~~~~------~~A~~~~eral~~~p~--------~~~lw~~y~~~e~~~~~~~~A~~~~~r 118 (476)
-..|.|++.|..|+..+...|+. ++.+.+|+||+..-|- .+.+|+.|+.++ ..++++.|+.+|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHH
Confidence 34689999999999999888888 8999999999976554 368889998874 55889999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
|+..+..-..+|..|++++.+.|++..||.++.+++..+|.+
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 988877788899999999999999999999999999888865
No 148
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.27 E-value=3.8e-11 Score=95.91 Aligned_cols=105 Identities=10% Similarity=0.112 Sum_probs=99.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHH
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH--VDQLWYK 132 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~--~~~lw~~ 132 (476)
+|.+...|..+|..+...|++++|...|++++..+|.+..+|..++.++...|+++.|...|++++...|. +..+|..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHh-CCHHHHHHHHHHHHhcCCC
Q 039282 133 YIRMEEIA-GNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 133 ~~~~~~~~-g~~~~A~~~~eral~~~P~ 159 (476)
++.++... |+++.|+..|++++...|.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence 99999999 9999999999999998886
No 149
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.26 E-value=9.2e-11 Score=96.37 Aligned_cols=117 Identities=13% Similarity=0.022 Sum_probs=102.7
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV-------DQLW 130 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~-------~~lw 130 (476)
....|..+|..+...|+++.|...|++++..+|.++.+|..++.++...|+++.|...|++++...|.+ ..+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999998876 8889
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 039282 131 YKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYE 174 (476)
Q Consensus 131 ~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g 174 (476)
+.++.++...|+++.|...|++++...|+...+..+..+....+
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998887776666666554433
No 150
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.26 E-value=3e-10 Score=118.84 Aligned_cols=171 Identities=11% Similarity=0.025 Sum_probs=153.8
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC--
Q 039282 74 EFDRARSMWELALEEDCRNHTLWCKYAEFEMINKF----------INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG-- 141 (476)
Q Consensus 74 ~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~----------~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g-- 141 (476)
-.++|...+++++..+|.+..+|..-+.+....|. ++.+...+++++..+|.+..+|+..+.+....+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34689999999999999999999999999988887 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhh-hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------
Q 039282 142 NVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYE-QVELARQVFERLVQCHPNVVSSWIKYAKFEMRR------------ 207 (476)
Q Consensus 142 ~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g-~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~------------ 207 (476)
+++++...++++++.+|.+ .+|...+.+....| .++++...+.+++..+|.+..+|...+.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 7799999999999999986 89999999999999 899999999999999999999999999988774
Q ss_pred --CCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccch
Q 039282 208 --GEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKES 253 (476)
Q Consensus 208 --g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~ 253 (476)
+.++++.+.+.+|+.. .| .+...|.....+....+.+
T Consensus 204 ~~~~~~eel~~~~~ai~~-~P--------~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 204 PENVLLKELELVQNAFFT-DP--------NDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CHHHHHHHHHHHHHHHHH-CS--------SCSHHHHHHHHHHSCCCCC
T ss_pred cHHHHHHHHHHHHHHHhh-CC--------CCccHHHHHHHHHhcCCCc
Confidence 5579999999999999 88 5566777766666555543
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.3e-10 Score=97.91 Aligned_cols=117 Identities=13% Similarity=0.016 Sum_probs=101.5
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 039282 53 RRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN---HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129 (476)
Q Consensus 53 ~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~l 129 (476)
..+|.+...|...|..+...|+++.|...|++++..+|.+ ..+|..++.++...|+++.|...|++++...|.+..+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3457888999999999999999999999999999999987 8889999999999999999999999999999988999
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHH
Q 039282 130 WYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKF 169 (476)
Q Consensus 130 w~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~ 169 (476)
|+.++.++...|+++.|+..|++++...|++ .+|..+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 9999999988899999999999888888874 555555544
No 152
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.25 E-value=1.1e-10 Score=112.61 Aligned_cols=198 Identities=10% Similarity=0.022 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.|...++++.+..+... +.-.++++.|...|.++ +.++...|+++.|...|.+++.+
T Consensus 9 eA~~~~~~a~k~~~~~~---------~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~ 65 (307)
T 2ifu_A 9 EAHEHIAKAEKYLKTSF---------MKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAYLQEAEA 65 (307)
T ss_dssp HHHHHHHHHHHHHCCCS---------SSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccccc---------cCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHH
Confidence 78888998888777531 11158899999999987 45677889999999999999998
Q ss_pred CCCc------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 039282 123 LPHV------DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-------QQAWLSYIKFELRYEQVELARQVFERLVQC 189 (476)
Q Consensus 123 ~p~~------~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~-------~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~ 189 (476)
.+.. ...+..++.++...|+++.|+..|++++...+. ...+..++.++.. |++++|...|++++..
T Consensus 66 ~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~ 144 (307)
T 2ifu_A 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAV 144 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 6532 457888899999999999999999999987542 1567788888888 9999999999999998
Q ss_pred CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhC
Q 039282 190 HPNV------VSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFG 263 (476)
Q Consensus 190 ~p~~------~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g 263 (476)
.|.. ..++..++.++...|++++|...|++++.. .+ ...... ..+.
T Consensus 145 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~-----~~~~~~----~~~~------------------ 196 (307)
T 2ifu_A 145 FENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM-YK-----EMENYP----TCYK------------------ 196 (307)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HH-----HTTCHH----HHHH------------------
T ss_pred HHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HH-----HcCChh----HHHH------------------
Confidence 7753 568899999999999999999999999998 55 111110 0000
Q ss_pred ChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC
Q 039282 264 DWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK 309 (476)
Q Consensus 264 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~ 309 (476)
+.. ..+..+...|+++.|+..|++++ ..|
T Consensus 197 -------~~~---------~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 197 -------KCI---------AQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp -------HHH---------HHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred -------HHH---------HHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 000 23344557899999999999999 877
No 153
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.24 E-value=4.6e-09 Score=116.38 Aligned_cols=249 Identities=9% Similarity=0.100 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---------------------------HH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN---------------------------HT 94 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---------------------------~~ 94 (476)
..|...|+++ ++...|...|.++...|+++.|+..|..|....+.. ..
T Consensus 1122 kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~a 1196 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNA 1196 (1630)
T ss_pred HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHH
Confidence 3677777664 788999999999999999999999998888665432 23
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Q 039282 95 LWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYE 174 (476)
Q Consensus 95 lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g 174 (476)
-|...|+.+...|+++.|..+|.+| ..|..++.++..+|+++.|...+.++ .+...|......+...|
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA----~n~~aWkev~~acve~~ 1264 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGK 1264 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh----CCHHHHHHHHHHHhhhh
Confidence 3445555555566666666666654 24666666666666666666666666 23356666666666666
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHcc--c
Q 039282 175 QVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYK--E 252 (476)
Q Consensus 175 ~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~--~ 252 (476)
++..|+.+... +..+ ++....++.+|...|.+++|..+++.++.. .+ ....+|..++.++.+.. +
T Consensus 1265 Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~feEAI~LlE~aL~L-er--------aH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1265 EFRLAQMCGLH-IVVH---ADELEELINYYQDRGYFEELITMLEAALGL-ER--------AHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-Ch--------hHhHHHHHHHHHHHhCCHHH
Confidence 66666665553 3333 345557788888888888888888888877 44 45556655554443321 1
Q ss_pred hhHH--HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHH-------------HHHHHhccCCHHHHHHH
Q 039282 253 SESE--ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRAL-------------YERLVERTKHLKVWISY 317 (476)
Q Consensus 253 ~e~A--~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l-------------~e~~l~~~~~~~vw~~~ 317 (476)
.-++ .|.......+.+.... ..-.+..++-+|.+.|++++|... |...+....+++++...
T Consensus 1332 lmEhlk~f~~rini~k~~r~~e----~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyyka 1407 (1630)
T 1xi4_A 1332 MREHLELFWSRVNIPKVLRAAE----QAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRA 1407 (1630)
T ss_pred HHHHHHHHHHhcccchHhHHHH----HHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHH
Confidence 1111 2222222111111000 000123566777889999999833 33333333478999999
Q ss_pred HHHHhhc
Q 039282 318 AKFEASA 324 (476)
Q Consensus 318 a~~e~~~ 324 (476)
+.|+...
T Consensus 1408 i~Fyl~~ 1414 (1630)
T 1xi4_A 1408 IQFYLEF 1414 (1630)
T ss_pred HHHHHhh
Confidence 9999865
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.23 E-value=7.1e-10 Score=105.95 Aligned_cols=169 Identities=6% Similarity=-0.075 Sum_probs=143.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH------TLWCKYAEFEMINKFINHARNVWDRAVAVLPHV-- 126 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~------~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~-- 126 (476)
+|.....+...+..+...|++++|...+++++...|... ..+..++.++...|+++.|...|++++...+..
T Consensus 71 ~~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 150 (293)
T 2qfc_A 71 DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID 150 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc
Confidence 355566778888899999999999999999999887754 234456667788899999999999999876543
Q ss_pred ----HHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCH-----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--
Q 039282 127 ----DQLWYKYIRMEEIAGNVAAARLIFDRWM---HWTPDQ-----QAWLSYIKFELRYEQVELARQVFERLVQCHPN-- 192 (476)
Q Consensus 127 ----~~lw~~~~~~~~~~g~~~~A~~~~eral---~~~P~~-----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~-- 192 (476)
..++..++.++...|+++.|...|++++ ...|+. .++..++..+...|++++|...|++++...+.
T Consensus 151 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 151 VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999 445552 57889999999999999999999999987543
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 039282 193 ----VVSSWIKYAKFEMRRGEIDRA-RNVYERALEK 223 (476)
Q Consensus 193 ----~~~~w~~~a~~~~~~g~~~~A-~~~~e~al~~ 223 (476)
.+.++..+|.++...|++++| ...|++|+..
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 267899999999999999999 8889999876
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.23 E-value=1.3e-10 Score=100.74 Aligned_cols=114 Identities=13% Similarity=0.067 Sum_probs=103.8
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHH
Q 039282 89 DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYI 167 (476)
Q Consensus 89 ~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~ 167 (476)
++.++..|...+..+...|+++.|...|++++...|.+..+|..++.++...|+++.|+..|++++..+|.+ .+|..++
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 86 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG 86 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 455678899999999999999999999999999999999999999999999999999999999999999985 8899999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039282 168 KFELRYEQVELARQVFERLVQCHPNVVSSWIKYAK 202 (476)
Q Consensus 168 ~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~ 202 (476)
..+...|++++|...|++++...|++...|...+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999998887766543
No 156
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.23 E-value=3.7e-11 Score=122.74 Aligned_cols=150 Identities=9% Similarity=0.079 Sum_probs=119.7
Q ss_pred HhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---------------HHHHHHHH
Q 039282 36 ELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRN---------------HTLWCKYA 100 (476)
Q Consensus 36 el~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---------------~~lw~~y~ 100 (476)
++..+. +|...|+.++..+|.+...|..+|..+...|+++.|+..|++|+.++|.+ ..+|..++
T Consensus 246 ~l~~~~-~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFE-KAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEE-CCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcc-cCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 344443 67777888888888889999999999999999999999999999999998 68888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHH
Q 039282 101 EFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELA 179 (476)
Q Consensus 101 ~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A 179 (476)
.++...|+++.|...|++++.+.|++..+|+.++.++..+|+++.|+..|+++++.+|++ .+|..++.++...++++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888888888888888888888888888888888888888875 5677777777777766655
Q ss_pred H-HHHHHH
Q 039282 180 R-QVFERL 186 (476)
Q Consensus 180 ~-~~~~r~ 186 (476)
. ..|.++
T Consensus 405 ~~~~~~~~ 412 (457)
T 1kt0_A 405 DRRIYANM 412 (457)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHH
Confidence 4 334443
No 157
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.22 E-value=1.9e-10 Score=95.95 Aligned_cols=119 Identities=10% Similarity=-0.048 Sum_probs=101.7
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHH
Q 039282 87 EEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLS 165 (476)
Q Consensus 87 ~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~ 165 (476)
..+|.++..|..++..+...|+++.|...|.+++...|.+..+|..++.++...|+++.|...|++++..+|+. .+|..
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999875 78888
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHH
Q 039282 166 YIKFELRYEQVELARQVFERLVQCHPN-----VVSSWIKYAKFEM 205 (476)
Q Consensus 166 ~~~~~~~~g~~~~A~~~~~r~l~~~p~-----~~~~w~~~a~~~~ 205 (476)
++..+...|+++.|...|++++...|+ +..++..+.....
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~ 127 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 127 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988887 5566665555444
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.21 E-value=5.6e-10 Score=89.73 Aligned_cols=113 Identities=13% Similarity=0.042 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Q 039282 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFE 170 (476)
Q Consensus 92 ~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~ 170 (476)
.+..|...+..+...|+++.|...|++++...|.+..+|..++.++...|+++.|...|++++...|.. .+|..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999974 7899999999
Q ss_pred HHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 039282 171 LRYEQVELARQVFERLVQCHPNVVSSWIKYAKFE 204 (476)
Q Consensus 171 ~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~ 204 (476)
...|++++|...|++++...|+++.+|..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999988887764
No 159
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.18 E-value=1.6e-11 Score=125.57 Aligned_cols=153 Identities=12% Similarity=0.158 Sum_probs=134.5
Q ss_pred hCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------------HHHHHHHHH
Q 039282 71 SQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---------------DQLWYKYIR 135 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---------------~~lw~~~~~ 135 (476)
..+++++|...|++++..+|.+...|...+..+...|+++.|...|++|+...|.+ ..+|..++.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34566788889999999999999999999999999999999999999999999998 689999999
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 039282 136 MEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRAR 214 (476)
Q Consensus 136 ~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~ 214 (476)
++..+|+++.|+..|.+++..+|++ .+|..++..+...|++++|+..|++++...|++..++..++.++...|+.+++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999985 889999999999999999999999999999999999999999999999887654
Q ss_pred -HHHHHHHHh
Q 039282 215 -NVYERALEK 223 (476)
Q Consensus 215 -~~~e~al~~ 223 (476)
..|.+++..
T Consensus 406 ~~~~~~~f~k 415 (457)
T 1kt0_A 406 RRIYANMFKK 415 (457)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHHhh
Confidence 566666554
No 160
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.18 E-value=3.1e-10 Score=93.47 Aligned_cols=101 Identities=7% Similarity=-0.012 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHH
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELR 172 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~ 172 (476)
..|+..+..+...|+++.|...|++++...|++..+|+.++.++...|+++.|+..|++++..+|+. .+|..++..+..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3578888899999999999999999999999999999999999999999999999999999999975 788999999999
Q ss_pred hhhHHHHHHHHHHHHHhCCCCH
Q 039282 173 YEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 173 ~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
.|++++|+..|++++...|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999888754
No 161
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=6e-10 Score=93.84 Aligned_cols=120 Identities=8% Similarity=-0.087 Sum_probs=109.8
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HH
Q 039282 87 EEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QA 162 (476)
Q Consensus 87 ~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~ 162 (476)
..+|.+...|...+..+...|+++.|...|++++...|++ ..+|..++.++...|+++.|+..|++++...|.. .+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3467889999999999999999999999999999999987 8899999999999999999999999999999965 78
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039282 163 WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR 206 (476)
Q Consensus 163 w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~ 206 (476)
|..++..+...|++++|...|++++...|++..++..++.+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999998888776543
No 162
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.17 E-value=7.7e-10 Score=99.75 Aligned_cols=128 Identities=13% Similarity=0.052 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHh
Q 039282 95 LWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRY 173 (476)
Q Consensus 95 lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~ 173 (476)
.++..+..+...|+++.|...|++++ .| ++.+|+.++.++...|+++.|...|++++..+|.. .+|..++..+...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 46677888899999999999999995 44 68999999999999999999999999999999975 8899999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 174 EQVELARQVFERLVQCHPNVV----------------SSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 174 g~~~~A~~~~~r~l~~~p~~~----------------~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
|++++|...|++++...|.+. .+|..++..+...|+++.|...|++++.. .|
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p 152 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM-KS 152 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-CC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc-Cc
Confidence 999999999999999888766 99999999999999999999999999999 77
No 163
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.17 E-value=2.2e-09 Score=102.39 Aligned_cols=178 Identities=9% Similarity=0.114 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDC--RNHTLWCKYAEFEMINKFINHARNVWDRAV 120 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p--~~~~lw~~y~~~e~~~~~~~~A~~~~~ral 120 (476)
.+...|++.+...+.+...+..+|..+...|+++.|..++.+++..+| .+..+....+.+++..|+.+.|+..++++.
T Consensus 84 ~a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 84 KNIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp TCCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467788888887666677778999999999999999999999999887 889999999999999999999999999999
Q ss_pred HhCCC----cHHHHHHHHHH--HHHhC--CHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 039282 121 AVLPH----VDQLWYKYIRM--EEIAG--NVAAARLIFDRWMHWTPDQ---QAWLSYIKFELRYEQVELARQVFERLVQC 189 (476)
Q Consensus 121 ~~~p~----~~~lw~~~~~~--~~~~g--~~~~A~~~~eral~~~P~~---~~w~~~~~~~~~~g~~~~A~~~~~r~l~~ 189 (476)
...|+ .+.+...++.. ....| .+..|..+|+++....|+. ..... .+.+.|++++|..+++.++..
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence 99883 24444444433 44445 8999999999999999972 22222 788999999999999988776
Q ss_pred ----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 190 ----------HPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 190 ----------~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.|+++++..+++.+....|+ .|.++++++.+. .|
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~-~P 284 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL-DH 284 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT-TC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh-CC
Confidence 48899999999999999998 899999999998 77
No 164
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.16 E-value=5.7e-10 Score=96.49 Aligned_cols=113 Identities=10% Similarity=0.020 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh------------------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEE------------------DCRNHTLWCKYAEFEMINKFINHARNVWDRAV 120 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~------------------~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral 120 (476)
...|...|..+...|+++.|+..|.+++.. +|.++.+|..++.++...|+++.|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567889999999999999999999999998 77788999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHH--HHHHHHHHHH
Q 039282 121 AVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQ--AWLSYIKFEL 171 (476)
Q Consensus 121 ~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~--~w~~~~~~~~ 171 (476)
.+.|.+...|+.++.++...|+++.|+..|++++..+|++. +...+..+..
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999863 3444444433
No 165
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.16 E-value=7.4e-10 Score=91.99 Aligned_cols=110 Identities=12% Similarity=0.004 Sum_probs=95.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH--------HHH
Q 039282 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ--------QAW 163 (476)
Q Consensus 92 ~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~--------~~w 163 (476)
....|..+|..+...|+++.|...|++|+.+.|.+..+|..++.++...|+++.|+..|+++++..|.. .++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 356788899999999999999999999999999999999999999999999999999999999987753 467
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039282 164 LSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAK 202 (476)
Q Consensus 164 ~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~ 202 (476)
...+.++...|++++|...|++++..+|+ ++....+..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKE 124 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHH
Confidence 77788888889999999999999988887 666555443
No 166
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.14 E-value=4.4e-11 Score=117.17 Aligned_cols=139 Identities=9% Similarity=0.044 Sum_probs=85.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH-----------------TLWCKYAEFEMINKFINHARNVWDR 118 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~-----------------~lw~~y~~~e~~~~~~~~A~~~~~r 118 (476)
|.....|...|..+...|+++.|+..|++++..+|.+. .+|+.++.++...|+++.|...|++
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34467788999999999999999999999999999877 3788888888888888888888888
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH-HHhhhHHHHHHHHHHHHHhCCCCH
Q 039282 119 AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFE-LRYEQVELARQVFERLVQCHPNVV 194 (476)
Q Consensus 119 al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~-~~~g~~~~A~~~~~r~l~~~p~~~ 194 (476)
++...|.+..+|+.++.++...|+++.|+..|++++...|++ .++..+..+. ...+..+.++..|.+++...|+++
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 888888888888888888888888888888888888888775 5555555553 344566777778888777777643
No 167
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.13 E-value=2.2e-09 Score=102.44 Aligned_cols=162 Identities=7% Similarity=-0.018 Sum_probs=135.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHH-----HH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHH
Q 039282 62 WINYAKWEGSQNEFDRARSMWELALEEDCRNHTL-----WC-KYAEFEMINKFINHARNVWDRAVAVLPHV------DQL 129 (476)
Q Consensus 62 w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~l-----w~-~y~~~e~~~~~~~~A~~~~~ral~~~p~~------~~l 129 (476)
+...+..+...|+++.|..++++++...+.++.. |. .++.++...++++.|...|++++...+.. ..+
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 3344677788999999999999999988776652 33 36777777889999999999999965442 347
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC----CCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC------HH
Q 039282 130 WYKYIRMEEIAGNVAAARLIFDRWMHWT----PDQ----QAWLSYIKFELRYEQVELARQVFERLVQCHPNV------VS 195 (476)
Q Consensus 130 w~~~~~~~~~~g~~~~A~~~~eral~~~----P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~------~~ 195 (476)
+..++.++...|+++.|...|++++... ... .++..++.++...|++++|...|++++...+.. +.
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~ 237 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHH
Confidence 8999999999999999999999999521 121 578999999999999999999999999876543 67
Q ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q 039282 196 SWIKYAKFEMRRG-EIDRARNVYERALEK 223 (476)
Q Consensus 196 ~w~~~a~~~~~~g-~~~~A~~~~e~al~~ 223 (476)
++..+|..+...| ++++|...|++|+..
T Consensus 238 ~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8999999999999 579999999999987
No 168
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.12 E-value=6.5e-11 Score=121.58 Aligned_cols=132 Identities=14% Similarity=0.067 Sum_probs=98.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIA 140 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~ 140 (476)
.|..+|..+...|++++|...|++|+..+|.+..+|..++.++...|+++.|...|++++...|.+..+|+.++.++...
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 44555666677788888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCH-HHHHHHHHH--HHHhhhHHHHHHHHH-----------HHHHhCCC
Q 039282 141 GNVAAARLIFDRWMHWTPDQ-QAWLSYIKF--ELRYEQVELARQVFE-----------RLVQCHPN 192 (476)
Q Consensus 141 g~~~~A~~~~eral~~~P~~-~~w~~~~~~--~~~~g~~~~A~~~~~-----------r~l~~~p~ 192 (476)
|++++|...|+++++..|+. .+|..++.. +...|++++|...++ +++...|+
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 88888888888888888765 555555555 667788888888888 66665554
No 169
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.12 E-value=2.5e-09 Score=88.08 Aligned_cols=100 Identities=14% Similarity=-0.009 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHH
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRNH---TLWCKYAEFEMINKFINHARNVWDRAVAVLPHV---DQLWYKYI 134 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~---~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~ 134 (476)
.++..|..+...|++++|...|++++..+|.++ .+|..++.++...|+++.|...|++++...|++ +..++.++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 466778888888999999999999998888887 788888988889999999999999999988888 77888888
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 135 RMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 135 ~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
.++...|+++.|+..|++++...|++
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 88888888888888888888888875
No 170
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.11 E-value=7e-10 Score=95.06 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCR-------NHT-----LWCKYAEFEMINKFINHARNVWDRAVAV---- 122 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~-------~~~-----lw~~y~~~e~~~~~~~~A~~~~~ral~~---- 122 (476)
...|...|..+...|+++.|...|++||.++|+ +.. +|...+.++...|+++.|...|++++.+
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 457888999999999999999999999999999 554 8999999999999999999999999998
Q ss_pred ---CCCcHHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 123 ---LPHVDQLW----YKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 123 ---~p~~~~lw----~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
.|++...| +..+..+..+|++++|+..|+++++..|+.
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 88888888 888888888888888888888888887753
No 171
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.11 E-value=6.5e-09 Score=94.41 Aligned_cols=142 Identities=8% Similarity=0.002 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC----CHHHHHHHHH
Q 039282 76 DRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG----NVAAARLIFD 151 (476)
Q Consensus 76 ~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g----~~~~A~~~~e 151 (476)
.+|...|+++.+. .++..+..++.++...++++.|...|++++.. .++..++.++.++.. + +++.|...|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3578899999874 88999999999999999999999999999875 579999999999887 7 8999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH----cCCHHHHHHHHHHHH
Q 039282 152 RWMHWTPDQQAWLSYIKFELR----YEQVELARQVFERLVQCHPN--VVSSWIKYAKFEMR----RGEIDRARNVYERAL 221 (476)
Q Consensus 152 ral~~~P~~~~w~~~~~~~~~----~g~~~~A~~~~~r~l~~~p~--~~~~w~~~a~~~~~----~g~~~~A~~~~e~al 221 (476)
+++... ....+..++.++.. .+++++|...|++++...|. ++.++..++.++.. .+++++|...|++++
T Consensus 78 ~A~~~g-~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 78 KAVEAG-SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HHHHTT-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HHHHCC-CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 997653 45778888888876 78999999999999998883 48999999999999 889999999999999
Q ss_pred Hh
Q 039282 222 EK 223 (476)
Q Consensus 222 ~~ 223 (476)
+.
T Consensus 157 ~~ 158 (212)
T 3rjv_A 157 SL 158 (212)
T ss_dssp HT
T ss_pred Hc
Confidence 86
No 172
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.11 E-value=6.2e-10 Score=110.93 Aligned_cols=249 Identities=10% Similarity=0.040 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.|+..++.+++..| ++.+...++.++...|++.++...+.. | +...|...|..+...|.++.|+.+|.++
T Consensus 79 eAi~yl~~ark~~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~-----p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 79 ELVKYLQMARKKAR-ESYVETELIFALAKTNRLAELEEFING-----P-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp -------------------------------CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHHHHHhCc-cchhHHHHHHHHHHhCCHHHHHHHHcC-----C-cHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 34444444443222 234444555555555555555544431 2 3347777777777777777777777766
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 039282 123 LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAK 202 (476)
Q Consensus 123 ~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~ 202 (476)
..|..++.++..+|++++|...|.++ .+...|...+..+...|+++.|..+... +..+|+ -...++.
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad---~l~~lv~ 215 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHAD---ELEELIN 215 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHH---HHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHh---hHHHHHH
Confidence 24777777777778888888888777 2456777777777778888877666554 234444 3445777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHH-HHHHHhCChHHHHHHHHhccCCCCc
Q 039282 203 FEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESE-ALRKEFGDWVLIEDAIVGKGKAPKD 281 (476)
Q Consensus 203 ~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A-~~ek~~g~~~~~~~~i~~~~~~p~~ 281 (476)
+|.+.|.+++|..+++.++.. .+ ....+|..++-++.+. .+++- ..-+.|..+-.+..++..-...-.+
T Consensus 216 ~Yek~G~~eEai~lLe~aL~l-e~--------ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGL-ER--------AHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTS-TT--------CCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCH
T ss_pred HHHHCCCHHHHHHHHHHHhCC-cH--------HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 888888888888888888876 33 4455666655554432 11211 1223444444455555433333334
Q ss_pred hhhHHHHHHcCCHHHHHHHHHHHHhc-------------cCCHHHHHHHHHHHhhc
Q 039282 282 KAYIHFEKSQGERERRRALYERLVER-------------TKHLKVWISYAKFEASA 324 (476)
Q Consensus 282 ~~~~~~~~~~g~~e~Ar~l~e~~l~~-------------~~~~~vw~~~a~~e~~~ 324 (476)
..++-++...+++++|....-..... ..+.+++...+.|+...
T Consensus 286 ~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~ 341 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 341 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc
Confidence 46667788999999998766554322 23678888888888854
No 173
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.10 E-value=3.3e-10 Score=90.28 Aligned_cols=105 Identities=10% Similarity=0.025 Sum_probs=85.0
Q ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--H-HHHHH
Q 039282 89 DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD--Q-QAWLS 165 (476)
Q Consensus 89 ~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~--~-~~w~~ 165 (476)
+|.++.+|..++.++...|+++.|...|++++...|.+..+|..++.++...|+++.|...|++++...|. . .+|..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778888888888888888888888888888888888888888888888888888888888888888776 3 67777
Q ss_pred HHHHHHHh-hhHHHHHHHHHHHHHhCCCC
Q 039282 166 YIKFELRY-EQVELARQVFERLVQCHPNV 193 (476)
Q Consensus 166 ~~~~~~~~-g~~~~A~~~~~r~l~~~p~~ 193 (476)
++..+... |++++|...|++++..+|++
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 77777777 77788888888777777763
No 174
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.10 E-value=6.8e-10 Score=94.93 Aligned_cols=97 Identities=15% Similarity=0.119 Sum_probs=78.5
Q ss_pred ChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 039282 33 DPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEF----------DRARSMWELALEEDCRNHTLWCKYAEF 102 (476)
Q Consensus 33 d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~----------~~A~~~~eral~~~p~~~~lw~~y~~~ 102 (476)
+.+-+..+. .|++.|++++..+|.+...|+.++.++...+++ ++|+..|++||.++|++..+|..++.+
T Consensus 11 ~~~r~~~fe-eA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 11 EFDRILLFE-QIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp SHHHHHHHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 444455554 899999999999999999999999998887664 589999999999999999999999998
Q ss_pred HHHcC-----------CHHHHHHHHHHHHHhCCCcHHHH
Q 039282 103 EMINK-----------FINHARNVWDRAVAVLPHVDQLW 130 (476)
Q Consensus 103 e~~~~-----------~~~~A~~~~~ral~~~p~~~~lw 130 (476)
+...| ++++|...|++|+.+.|++...+
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~ 128 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL 128 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence 88764 67777777777777777765443
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.08 E-value=2e-09 Score=95.85 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=109.8
Q ss_pred HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhCCH
Q 039282 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV------LPHVDQLWYKYIRMEEIAGNV 143 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~------~p~~~~lw~~~~~~~~~~g~~ 143 (476)
...|++++|..+++......+....+|..++.++...|+++.|...|++++.. .|....++..++.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34677777777555444322255677777777888888888888888888773 333456777778888888888
Q ss_pred HHHHHHHHHHHhc---CC-CH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCC
Q 039282 144 AAARLIFDRWMHW---TP-DQ----QAWLSYIKFELRYEQVELARQVFERLVQCHPN--V----VSSWIKYAKFEMRRGE 209 (476)
Q Consensus 144 ~~A~~~~eral~~---~P-~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~--~----~~~w~~~a~~~~~~g~ 209 (476)
+.|...|.+++.. .| +. .++..++..+...|++++|...|++++...+. + ..++..++.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 8888888887776 33 21 45677777788888888888888888765322 1 2346788999999999
Q ss_pred HHHHHHHHHHHHHh
Q 039282 210 IDRARNVYERALEK 223 (476)
Q Consensus 210 ~~~A~~~~e~al~~ 223 (476)
+++|...|+++++.
T Consensus 163 ~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 163 LLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999987
No 176
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.07 E-value=6.4e-10 Score=95.12 Aligned_cols=70 Identities=10% Similarity=0.022 Sum_probs=63.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 039282 72 QNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFI----------NHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG 141 (476)
Q Consensus 72 ~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~----------~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g 141 (476)
.+.++.|+..|++++.++|.++..|+.++.++...+++ +.|+..|++|+.+.|+...+|+.++.++..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 35688999999999999999999999999999888764 59999999999999999999999999988775
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.05 E-value=2e-09 Score=88.24 Aligned_cols=115 Identities=11% Similarity=0.031 Sum_probs=102.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--------HHH
Q 039282 91 RNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD--------QQA 162 (476)
Q Consensus 91 ~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~--------~~~ 162 (476)
..+..|..++..+...|+++.|...|++++...|.+..+|..++.++...|+++.|...|++++...|. ..+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 346788999999999999999999999999999999999999999999999999999999999998764 467
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039282 163 WLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR 206 (476)
Q Consensus 163 w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~ 206 (476)
|..++..+...|+++.|...|++++...|+ +..+..++.+...
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~ 124 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence 888899999999999999999999999885 8888777766554
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.03 E-value=1.2e-08 Score=83.85 Aligned_cols=112 Identities=12% Similarity=0.023 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC----HHHHHHHH
Q 039282 95 LWCKYAEFEMINKFINHARNVWDRAVAVLPHVD---QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD----QQAWLSYI 167 (476)
Q Consensus 95 lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~---~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~----~~~w~~~~ 167 (476)
.++..+..+...|+++.|...|++++...|.++ .+|+.++.++...|+++.|+..|++++...|+ ..++..++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 466778888899999999999999999998877 78999999999999999999999999998887 36688888
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039282 168 KFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR 206 (476)
Q Consensus 168 ~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~ 206 (476)
..+...|++++|...|++++..+|+++.+......+..-
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 888899999999999999999999877666655554443
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.02 E-value=3.8e-09 Score=104.65 Aligned_cols=122 Identities=8% Similarity=-0.037 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------------hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALE----------------EDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~----------------~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
...|..+|..+...|+++.|+..|++++. .+|.+..+|..++.++...|+++.|...|++++..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 66777788888888888888888888888888888
Q ss_pred CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHH
Q 039282 123 LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELAR 180 (476)
Q Consensus 123 ~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~ 180 (476)
.|.+..+|+.++.++...|+++.|+..|+++++..|++ .++..+..+....++.+++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888888888888888888888764 56666777766666666554
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.02 E-value=7.4e-10 Score=90.31 Aligned_cols=88 Identities=9% Similarity=0.048 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHh---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRR---VPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRA 119 (476)
Q Consensus 43 ~a~~~~e~~l~~---~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ra 119 (476)
.|...|++++.. +|.+..+|..+|.++...|++++|+..|++++..+|+++.++..++.++...|+++.|...|+++
T Consensus 8 ~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 8 QAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp CCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566777777777 46677777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhCCCcHHHH
Q 039282 120 VAVLPHVDQLW 130 (476)
Q Consensus 120 l~~~p~~~~lw 130 (476)
+...|.++.+.
T Consensus 88 l~~~p~~~~~~ 98 (117)
T 3k9i_A 88 IAETSDDETIQ 98 (117)
T ss_dssp HHHHCCCHHHH
T ss_pred HHhCCCcHHHH
Confidence 77777766554
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.01 E-value=6.9e-09 Score=89.58 Aligned_cols=109 Identities=11% Similarity=0.118 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHH
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVAV--------LPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAW 163 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~~--------~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w 163 (476)
+..|...|..+...|++..|...|.+++.. .|.++. | ....|.. .+|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~-~-----------------------~~~~~~~~~~~ 66 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE-W-----------------------VELDRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH-H-----------------------HHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH-H-----------------------HHHHHHHHHHH
Confidence 455666666666666666666666666665 222111 0 0113333 567
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 164 LSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 164 ~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
..++..+...|+++.|...|++++..+|+++.+|+.+|..+...|+++.|...|++++.. .|
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l-~p 128 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN-HP 128 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CG
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc-CC
Confidence 777888888888888888888888888888888888888888888888888888888888 66
No 182
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.01 E-value=1.8e-08 Score=96.02 Aligned_cols=148 Identities=7% Similarity=0.048 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCH
Q 039282 42 LHKRNDFEDSIRRVPGDTA------VWINYAKWEGSQNEFDRARSMWELALEEDCRN------HTLWCKYAEFEMINKFI 109 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~------~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~------~~lw~~y~~~e~~~~~~ 109 (476)
..|...|++++...|.... .+..++.++...|++++|...|++++...+.. ..++..+|.++...|++
T Consensus 92 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~ 171 (293)
T 2qfc_A 92 KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL 171 (293)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCH
Confidence 3778888999988876542 34567778888999999999999999875544 56899999999999999
Q ss_pred HHHHHHHHHHH---HhCCCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhhh
Q 039282 110 NHARNVWDRAV---AVLPHVD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-------QQAWLSYIKFELRYEQ 175 (476)
Q Consensus 110 ~~A~~~~~ral---~~~p~~~----~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~-------~~~w~~~~~~~~~~g~ 175 (476)
+.|...|++++ ...|... .+++.++.++...|+++.|...|++++...+. ..++...+..+...|+
T Consensus 172 ~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~ 251 (293)
T 2qfc_A 172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999 5566533 68999999999999999999999999987654 4678899999999999
Q ss_pred HHHH-HHHHHHHHHh
Q 039282 176 VELA-RQVFERLVQC 189 (476)
Q Consensus 176 ~~~A-~~~~~r~l~~ 189 (476)
+++| ...|++++..
T Consensus 252 ~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 252 EEAEIEDAYKKASFF 266 (293)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 9999 8889998864
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.00 E-value=8.5e-10 Score=113.23 Aligned_cols=122 Identities=16% Similarity=0.048 Sum_probs=109.1
Q ss_pred hhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 039282 37 LYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVW 116 (476)
Q Consensus 37 l~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~ 116 (476)
..++. +|...|+++++.+|.+..+|..+|.++...|++++|+..|++++.++|.++.+|..++.++...|++++|...|
T Consensus 19 ~g~~~-~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~ 97 (477)
T 1wao_1 19 AKDYE-NAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDY 97 (477)
T ss_dssp TTCHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCHH-HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 34454 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHH--HHHhCCHHHHHHHHH-----------HHHhcCCC
Q 039282 117 DRAVAVLPHVDQLWYKYIRM--EEIAGNVAAARLIFD-----------RWMHWTPD 159 (476)
Q Consensus 117 ~ral~~~p~~~~lw~~~~~~--~~~~g~~~~A~~~~e-----------ral~~~P~ 159 (476)
++++...|.+..+|..++.+ +...|++++|+..++ +++...|+
T Consensus 98 ~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~ 153 (477)
T 1wao_1 98 ETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDE 153 (477)
T ss_dssp HHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccc
Confidence 99999999999999999888 777899999999999 77777765
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.99 E-value=8.8e-10 Score=89.85 Aligned_cols=91 Identities=13% Similarity=0.018 Sum_probs=81.3
Q ss_pred hCCCHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHH
Q 039282 71 SQNEFDRARSMWELALEE---DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAAR 147 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~---~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~ 147 (476)
..|++++|+..|++++.. +|.++.+|..++.++...|+++.|...|++++...|+++.+++.++.++...|+++.|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 368889999999999999 69999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCHH
Q 039282 148 LIFDRWMHWTPDQQ 161 (476)
Q Consensus 148 ~~~eral~~~P~~~ 161 (476)
..|++++...|++.
T Consensus 82 ~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 82 ELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHCCCH
T ss_pred HHHHHHHHhCCCcH
Confidence 99999999988763
No 185
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.97 E-value=6.8e-09 Score=84.01 Aligned_cols=83 Identities=16% Similarity=0.150 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
.+...|++++..+|.+...|..+|.++...|+++.|+..|++++..+|.++..|..++.++...|+++.|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46677888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred CCC
Q 039282 123 LPH 125 (476)
Q Consensus 123 ~p~ 125 (476)
.|.
T Consensus 83 ~~~ 85 (115)
T 2kat_A 83 AQS 85 (115)
T ss_dssp HHH
T ss_pred ccc
Confidence 664
No 186
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.96 E-value=1.1e-08 Score=90.98 Aligned_cols=148 Identities=15% Similarity=0.155 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH------hcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 039282 43 HKRNDFEDSIRRVP-GDTAVWINYAKWEGSQNEFDRARSMWELALE------EDCRNHTLWCKYAEFEMINKFINHARNV 115 (476)
Q Consensus 43 ~a~~~~e~~l~~~p-~~~~~w~~~a~~~~~~~~~~~A~~~~eral~------~~p~~~~lw~~y~~~e~~~~~~~~A~~~ 115 (476)
.|...++.. ..+| .....|..+|.++...|+++.|...|++++. ..|....++..++.++...|+++.|...
T Consensus 10 ~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 88 (203)
T 3gw4_A 10 LAERQAQAL-LAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC 88 (203)
T ss_dssp HHHHHHHHH-HTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHh-cCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555544333 3455 6688999999999999999999999999998 4455678899999999999999999999
Q ss_pred HHHHHHh---CCC----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CH----HHHHHHHHHHHHhhhHHHHHH
Q 039282 116 WDRAVAV---LPH----VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP---DQ----QAWLSYIKFELRYEQVELARQ 181 (476)
Q Consensus 116 ~~ral~~---~p~----~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P---~~----~~w~~~~~~~~~~g~~~~A~~ 181 (476)
|++++.. .|+ ...++..++.++...|+++.|+..|++++...+ +. ..+..++..+...|++++|..
T Consensus 89 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 168 (203)
T 3gw4_A 89 FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168 (203)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 9999998 442 345688899999999999999999999987642 22 346788888999999999999
Q ss_pred HHHHHHHhCC
Q 039282 182 VFERLVQCHP 191 (476)
Q Consensus 182 ~~~r~l~~~p 191 (476)
.|++++....
T Consensus 169 ~~~~al~~~~ 178 (203)
T 3gw4_A 169 HWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987643
No 187
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.94 E-value=1.3e-07 Score=90.19 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLP--HVDQLWYKYIRME 137 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p--~~~~lw~~~~~~~ 137 (476)
.+...|+.+.. ++ |+..|++.+...+.+......++.++...|+++.|..++.+++...| .+..+....++++
T Consensus 72 ~a~~~la~~~~--~~---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~ 146 (310)
T 3mv2_B 72 KVLDLYVQFLD--TK---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVA 146 (310)
T ss_dssp HHHHHHHHHHT--TT---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--cc---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHH
Confidence 35566666653 22 88999998877666777778999999999999999999999999887 7899999999999
Q ss_pred HHhCCHHHHHHHHHHHHhcCC-----CHHHHHHHHH----HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 039282 138 EIAGNVAAARLIFDRWMHWTP-----DQQAWLSYIK----FELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRG 208 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~P-----~~~~w~~~~~----~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g 208 (476)
...|+.+.|++.++++.+.+| +..+...++. +....+++..|..+|+.+...+|+.......+. .++..|
T Consensus 147 L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g 225 (310)
T 3mv2_B 147 LLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQR 225 (310)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHT
T ss_pred HHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcC
Confidence 999999999999999999999 3455555443 333334899999999999999887222222222 789999
Q ss_pred CHHHHHHHHHHHHHh
Q 039282 209 EIDRARNVYERALEK 223 (476)
Q Consensus 209 ~~~~A~~~~e~al~~ 223 (476)
++++|...++.+++.
T Consensus 226 ~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 226 NIAEAQGIVELLLSD 240 (310)
T ss_dssp CHHHHHHHHHHHHSH
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999977665
No 188
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.93 E-value=1e-08 Score=87.79 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HH-----HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV-------DQ-----LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~-------~~-----lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
...|...+......|+++.|...|++|+.+.|.+ .. +|...+.++..+|++++|+..|+++|..
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l---- 86 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY---- 86 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----
Confidence 4567778888888888888888888888888872 22 5555555555555555555555555443
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 161 QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSW----IKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 161 ~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w----~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
|.+.+..+|+++.+| ++.|..+...|++++|...|+++++. .|
T Consensus 87 ----------------------~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel-~p 133 (159)
T 2hr2_A 87 ----------------------FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM-IE 133 (159)
T ss_dssp ----------------------HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HH
T ss_pred ----------------------hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc-CC
Confidence 222222277666677 77777777777777777777777766 55
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.92 E-value=7e-10 Score=108.59 Aligned_cols=138 Identities=10% Similarity=0.012 Sum_probs=93.1
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHhCCHHHHHHHH
Q 039282 88 EDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD-----------------QLWYKYIRMEEIAGNVAAARLIF 150 (476)
Q Consensus 88 ~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~-----------------~lw~~~~~~~~~~g~~~~A~~~~ 150 (476)
..+.....|...+..+...|+++.|...|++++...|.+. .+|+.++.++...|+++.|+..|
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344567789999999999999999999999999999866 48999999999999999999999
Q ss_pred HHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhhcC
Q 039282 151 DRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKF-EMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 151 eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~-~~~~g~~~~A~~~~e~al~~~~p 226 (476)
++++..+|++ .+|..++..+...|++++|+..|++++...|++..++..++.+ ....+..+.++.+|.+++.. .|
T Consensus 254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~-~p 330 (338)
T 2if4_A 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG-KD 330 (338)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CC
Confidence 9999999975 8899999999999999999999999999999999999999888 44557788999999999988 66
No 190
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.90 E-value=2.1e-08 Score=81.11 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 039282 77 RARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW 156 (476)
Q Consensus 77 ~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~ 156 (476)
.|+..|++++..+|.++.+|..++.++...|+++.|...|++++...|.+...|+.++.++...|+++.|+..|++++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCH
Q 039282 157 TPDQ 160 (476)
Q Consensus 157 ~P~~ 160 (476)
.|..
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 7753
No 191
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=2.1e-08 Score=95.64 Aligned_cols=148 Identities=7% Similarity=0.065 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHhCCCCHHH-----HH-HHHHHHHhCCCHHHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCH
Q 039282 42 LHKRNDFEDSIRRVPGDTAV-----WI-NYAKWEGSQNEFDRARSMWELALEEDCRN------HTLWCKYAEFEMINKFI 109 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~-----w~-~~a~~~~~~~~~~~A~~~~eral~~~p~~------~~lw~~y~~~e~~~~~~ 109 (476)
..|...|++++...|.+... |. .++.++...|+++.|...|++++...+.. ..++..+|.++...|++
T Consensus 92 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~ 171 (293)
T 3u3w_A 92 KEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL 171 (293)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCH
Confidence 48899999999988776552 33 47888888899999999999999865443 34789999999999999
Q ss_pred HHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhh-
Q 039282 110 NHARNVWDRAVAVL-------PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-------QQAWLSYIKFELRYE- 174 (476)
Q Consensus 110 ~~A~~~~~ral~~~-------p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~-------~~~w~~~~~~~~~~g- 174 (476)
+.|...|++++... |....+++.++.++...|+++.|...|++++...+. ..++...+..+...|
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 172 KKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999532 223568899999999999999999999999987643 367899999999999
Q ss_pred hHHHHHHHHHHHHHh
Q 039282 175 QVELARQVFERLVQC 189 (476)
Q Consensus 175 ~~~~A~~~~~r~l~~ 189 (476)
.+++|...|++++..
T Consensus 252 ~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 252 EEAEIEDAYKKASFF 266 (293)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 579999999999875
No 192
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.89 E-value=1.6e-08 Score=100.25 Aligned_cols=123 Identities=7% Similarity=-0.077 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVA----------------VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW 156 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~----------------~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~ 156 (476)
...|...+..+...|+++.|...|++++. ..|....+|..++.++...|+++.|+..|++++..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688899999999999999999999998 66777889999999999999999999999999999
Q ss_pred CCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 039282 157 TPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARN 215 (476)
Q Consensus 157 ~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~ 215 (476)
+|+. .+|..++..+...|++++|...|++++...|++..++..++.++...++.+++..
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9975 8899999999999999999999999999999999999999999888877766543
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.88 E-value=1.6e-08 Score=85.66 Aligned_cols=138 Identities=11% Similarity=0.011 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCRNH------TLWCKYAEFEMINKFINHARNVWDRAVAVLPHV------ 126 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~------~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~------ 126 (476)
..++..+|..+...|++++|...|++++...+... .++..++.++...|+++.|...|++++...+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 34677788888888888888888888887654321 466777777777777777777777777664432
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 039282 127 DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMR 206 (476)
Q Consensus 127 ~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~ 206 (476)
..++..++.++...|+++.|...|++++...+.. ++ .+....++..++.++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------------~~--------------~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-------------KD--------------RIGEGRACWSLGNAYTA 141 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-------------TC--------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc-------------cc--------------hHhHHHHHHHHHHHHHH
Confidence 3455555666666666666666666655432110 00 00113345555666666
Q ss_pred cCCHHHHHHHHHHHHHh
Q 039282 207 RGEIDRARNVYERALEK 223 (476)
Q Consensus 207 ~g~~~~A~~~~e~al~~ 223 (476)
.|++++|...++++++.
T Consensus 142 ~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHH
Confidence 66666666666666654
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.88 E-value=2.4e-08 Score=100.22 Aligned_cols=164 Identities=8% Similarity=0.117 Sum_probs=133.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEEDCRNH-----------------TLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~-----------------~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
..-+.-|.-+...|++++|.+.|.+++...|... .+...++.++...|++++|..++.+++..
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~ 84 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEY 84 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3445567777888999999999999999887752 35788999999999999999999999987
Q ss_pred CCCcH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 039282 123 LPHVD------QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-------QQAWLSYIKFELRYEQVELARQVFERLVQC 189 (476)
Q Consensus 123 ~p~~~------~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~-------~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~ 189 (476)
.+... .+...++.+....|+++.|..++.+++.+.+. ..++..++.++...|++++|..++++++..
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 164 (434)
T 4b4t_Q 85 MMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE 164 (434)
T ss_dssp HHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH
Confidence 65532 23445556666678999999999999876432 267888999999999999999999998875
Q ss_pred CC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 190 HP------NVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 190 ~p------~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.. ....++...+.++...|++++|+.+|++++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 165 FKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 32 33578899999999999999999999999876
No 195
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.87 E-value=2.6e-08 Score=76.30 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=79.0
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIR 135 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~ 135 (476)
|.+...|..+|..+...|++++|...|++++..+|.++.+|..++.++...|+++.|...|++++...|.+...|..++.
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhC
Q 039282 136 MEEIAG 141 (476)
Q Consensus 136 ~~~~~g 141 (476)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 876654
No 196
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.84 E-value=3.6e-08 Score=83.45 Aligned_cols=100 Identities=7% Similarity=-0.014 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------
Q 039282 93 HTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVD------QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD------- 159 (476)
Q Consensus 93 ~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~------~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~------- 159 (476)
..++..++.++...|+++.|...|++++...|... .++..++.++...|+++.|...|++++...+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45788888899999999999999999998865422 47888889999999999999999998876543
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 160 QQAWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 160 ~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
..++..++..+...|++++|...|++++...+.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 246777888888889999999999998876543
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.81 E-value=3.9e-09 Score=84.29 Aligned_cols=94 Identities=11% Similarity=0.023 Sum_probs=82.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHH
Q 039282 58 DTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHV------DQLWY 131 (476)
Q Consensus 58 ~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~------~~lw~ 131 (476)
+...|..+|..+...|++++|...|++++..+|.++.+|..++.++...|+++.|...|++++...|.+ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999999999999999998 77888
Q ss_pred HHHHHHHHhCCHHHHHHHHH
Q 039282 132 KYIRMEEIAGNVAAARLIFD 151 (476)
Q Consensus 132 ~~~~~~~~~g~~~~A~~~~e 151 (476)
.++.++...|.++.|...|+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 88888877776655554443
No 198
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.80 E-value=3.4e-07 Score=85.46 Aligned_cols=185 Identities=15% Similarity=0.090 Sum_probs=132.1
Q ss_pred CChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-------hC--------------CCHHHHHHHHHHHHHhcC
Q 039282 32 VDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEG-------SQ--------------NEFDRARSMWELALEEDC 90 (476)
Q Consensus 32 ~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~-------~~--------------~~~~~A~~~~eral~~~p 90 (476)
.|++-..+--.-..+.+|-.+..+|.|......-+..+. +. .+..+|+.+|.|+.+.
T Consensus 39 ~D~elv~~~~P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y-- 116 (301)
T 3u64_A 39 DDLDLVAQSLPLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY-- 116 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CCHHHHHHhccHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--
Confidence 677777776678899999999999999876554444433 22 1355778888887641
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHH-----HHHHHHH-hCCCcHHH--HHHHHHHHHH-h--C------CHHHHHHHHHHH
Q 039282 91 RNHTLWCKYAEFEMINKFINHARN-----VWDRAVA-VLPHVDQL--WYKYIRMEEI-A--G------NVAAARLIFDRW 153 (476)
Q Consensus 91 ~~~~lw~~y~~~e~~~~~~~~A~~-----~~~ral~-~~p~~~~l--w~~~~~~~~~-~--g------~~~~A~~~~era 153 (476)
.+.-++.....+.++.. -+..++. ..|.+... |...+..-.. . | ....|+..++|+
T Consensus 117 -------~~raL~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerA 189 (301)
T 3u64_A 117 -------ALSSLETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERA 189 (301)
T ss_dssp -------HHHHHHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHH
Confidence 11112222222222211 2333343 34555554 5544444321 1 2 367899999999
Q ss_pred HhcCCCH---HHHHHHHHHHHHh-----hhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 039282 154 MHWTPDQ---QAWLSYIKFELRY-----EQVELARQVFERLVQCHPNV-VSSWIKYAKFEMRR-GEIDRARNVYERALEK 223 (476)
Q Consensus 154 l~~~P~~---~~w~~~~~~~~~~-----g~~~~A~~~~~r~l~~~p~~-~~~w~~~a~~~~~~-g~~~~A~~~~e~al~~ 223 (476)
++++|.. .+|..++.++... |+.++|+..|++++.+.|+. ..++..|+.++... |+.+.+...+++++..
T Consensus 190 leLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 190 CDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 9999994 7899999999884 99999999999999999975 99999999999885 9999999999999997
Q ss_pred hcC
Q 039282 224 KLA 226 (476)
Q Consensus 224 ~~p 226 (476)
.|
T Consensus 270 -~p 271 (301)
T 3u64_A 270 -DP 271 (301)
T ss_dssp -CG
T ss_pred -CC
Confidence 55
No 199
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.76 E-value=4.3e-08 Score=77.42 Aligned_cols=72 Identities=14% Similarity=0.118 Sum_probs=62.9
Q ss_pred hCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 039282 54 RVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH 125 (476)
Q Consensus 54 ~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~ 125 (476)
.+|.+..+|..+|.++...|++++|+..|++++..+|.++.+|..++.++...|+++.|...|++++.+.|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 478899999999999999999999999999999999999999999999999999999999999999987664
No 200
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.76 E-value=2e-06 Score=88.47 Aligned_cols=162 Identities=10% Similarity=0.083 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHh--CCCcH
Q 039282 60 AVWINYAKWEGSQNEFDRARSMWELALEED-CRNHTLWCKYAEFEMINK---------FINHARNVWDRAVAV--LPHVD 127 (476)
Q Consensus 60 ~~w~~~a~~~~~~~~~~~A~~~~eral~~~-p~~~~lw~~y~~~e~~~~---------~~~~A~~~~~ral~~--~p~~~ 127 (476)
..+......+.+.|++++|..+|+++.... +-+...|..++..+...+ .++.|..+|+++... .| +.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-NE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-CH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-CH
Confidence 356677788889999999999999998642 236777888888776544 378999999999875 35 48
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 039282 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHW--TPDQQAWLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSWIKYAKF 203 (476)
Q Consensus 128 ~lw~~~~~~~~~~g~~~~A~~~~eral~~--~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~--~p~~~~~w~~~a~~ 203 (476)
..|..++..+...|+++.|..+|+++... .|+...|..++..+.+.|++++|..+|+.+... .|+ ..+|..++..
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~ 184 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHH
Confidence 88999999999999999999999998765 588899999999999999999999999999875 466 8899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 039282 204 EMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 204 ~~~~g~~~~A~~~~e~al~~ 223 (476)
+.+.|+.++|..+|+++-+.
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HhhCCCHHHHHHHHHHHHHh
Confidence 99999999999999999876
No 201
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.7e-06 Score=86.56 Aligned_cols=185 Identities=11% Similarity=0.001 Sum_probs=131.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q 039282 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHV-----------------DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP 158 (476)
Q Consensus 96 w~~y~~~e~~~~~~~~A~~~~~ral~~~p~~-----------------~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P 158 (476)
-+.-+.-....|++.+|...|.+++...|.. ......++.++...|+++.|...|.+++...+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3445666778899999999999999988863 24578889999999999999999999887654
Q ss_pred CH-------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhc
Q 039282 159 DQ-------QAWLSYIKFELRYEQVELARQVFERLVQCHP------NVVSSWIKYAKFEMRRGEIDRARNVYERALEKKL 225 (476)
Q Consensus 159 ~~-------~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p------~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~ 225 (476)
.. .+....+.+....|+++.|..+++.++...+ ....++..+|.++...|++++|..+++.++.. +
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-~ 165 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLRE-F 165 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-H
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHH-H
Confidence 31 2333444555567889999999999887543 23568889999999999999999999999887 5
Q ss_pred CCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHH
Q 039282 226 ADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLV 305 (476)
Q Consensus 226 p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l 305 (476)
.... +......++. ..+.++...|++++|+.+|.+++
T Consensus 166 ~~~~--~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 166 KKLD--DKPSLVDVHL-----------------------------------------LESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp TTSS--CSTHHHHHHH-----------------------------------------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred Hhcc--cchhHHHHHH-----------------------------------------HHHHHHHHhCcHHHHHHHHHHHH
Confidence 4110 1001111111 33456668999999999999998
Q ss_pred hccC---C-----HHHHHHHHHHHhhc
Q 039282 306 ERTK---H-----LKVWISYAKFEASA 324 (476)
Q Consensus 306 ~~~~---~-----~~vw~~~a~~e~~~ 324 (476)
...+ + ..++...+.+....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~g~~~~~~ 229 (434)
T 4b4t_Q 203 TAANSIYCPTQTVAELDLMSGILHCED 229 (434)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHTTSS
T ss_pred HHhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 7643 2 23445555555544
No 202
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.65 E-value=5.2e-08 Score=76.25 Aligned_cols=89 Identities=13% Similarity=0.022 Sum_probs=68.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhC
Q 039282 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHT-LWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAG 141 (476)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~-lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g 141 (476)
+..|..+...|++++|+..|++++..+|.++. +|..++.++...|+++.|...|++++...|++..+|.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777888888888888888888888888 88888888888888888888888888888887777633 3
Q ss_pred CHHHHHHHHHHHHhcCCC
Q 039282 142 NVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 142 ~~~~A~~~~eral~~~P~ 159 (476)
.+..+...|.+++..+|+
T Consensus 76 ~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHHhccCcc
Confidence 455556666666555543
No 203
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.59 E-value=3.2e-07 Score=72.28 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=65.4
Q ss_pred hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q 039282 88 EDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD 159 (476)
Q Consensus 88 ~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~ 159 (476)
.+|+++.+|..++.++...|+++.|...|++++...|.+..+|+.++.++...|+++.|+..|++++...|.
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 479999999999999999999999999999999999999999999999999999999999999999987654
No 204
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.58 E-value=9.4e-06 Score=83.42 Aligned_cols=176 Identities=13% Similarity=0.134 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHhc--CCCH
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAV--LPHVDQLWYKYIRMEEIAG---------NVAAARLIFDRWMHW--TPDQ 160 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~--~p~~~~lw~~~~~~~~~~g---------~~~~A~~~~eral~~--~P~~ 160 (476)
.++...++.+.+.|+++.|..+|+++... .| +...|..++..+...+ +++.|..+|+++... .|+.
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 35677788889999999999999999876 34 4777888887776543 378899999988765 5788
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHH
Q 039282 161 QAWLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQ 238 (476)
Q Consensus 161 ~~w~~~~~~~~~~g~~~~A~~~~~r~l~~--~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~ 238 (476)
..|..++..+.+.|+++.|..+|+++... .|+ ..+|..++..+.+.|+.+.|..+|+.+.+.++. .+..
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~--------Pd~~ 176 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADKAYEVDAHMVESEVV--------PEEP 176 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC--------CCHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------CCHH
Confidence 89999999999999999999999999875 466 889999999999999999999999999887332 2333
Q ss_pred HHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhcc--CCHHHHHH
Q 039282 239 LFVAFAEFEERYKESESEALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERT--KHLKVWIS 316 (476)
Q Consensus 239 l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~--~~~~vw~~ 316 (476)
.|.... ..+.+.|++++|..+|+++.+.. |+...+..
T Consensus 177 ty~~Li-----------------------------------------~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~ 215 (501)
T 4g26_A 177 ELAALL-----------------------------------------KVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDM 215 (501)
T ss_dssp HHHHHH-----------------------------------------HHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHH
T ss_pred HHHHHH-----------------------------------------HHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence 343333 33346788888888888876543 46666665
Q ss_pred HHHH
Q 039282 317 YAKF 320 (476)
Q Consensus 317 ~a~~ 320 (476)
+...
T Consensus 216 l~~~ 219 (501)
T 4g26_A 216 IEEW 219 (501)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 205
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.55 E-value=2.7e-06 Score=82.59 Aligned_cols=148 Identities=9% Similarity=0.042 Sum_probs=107.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHH--HHhC---CCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---cC-----CHHHHHH
Q 039282 48 FEDSIRRVPGDTAVWINYAKW--EGSQ---NEFDRARSMWELALEEDCRNHTLWCKYAEFEMI---NK-----FINHARN 114 (476)
Q Consensus 48 ~e~~l~~~p~~~~~w~~~a~~--~~~~---~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~---~~-----~~~~A~~ 114 (476)
.+++...-|.+..+|-.|.+. +... .++.+|+.+|++|++++|+++.+|..++..+.. .+ .......
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 334556678887777665543 3333 345789999999999999998888766655432 11 1111222
Q ss_pred HHHH--HHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 115 VWDR--AVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 115 ~~~r--al~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
.+.+ ++...|.++.++..++.+....|+++.|+..+++++..+|+...|..++..+.-.|++++|...|++++.+.|.
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 2222 22455888888888888888889999999999999999988777778888888999999999999999999998
Q ss_pred CHHH
Q 039282 193 VVSS 196 (476)
Q Consensus 193 ~~~~ 196 (476)
...
T Consensus 343 -~~t 345 (372)
T 3ly7_A 343 -ANT 345 (372)
T ss_dssp -HHH
T ss_pred -cCh
Confidence 444
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.55 E-value=6.4e-07 Score=68.27 Aligned_cols=79 Identities=13% Similarity=0.204 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHH
Q 039282 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFE 170 (476)
Q Consensus 92 ~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~ 170 (476)
++..|..++..+...|+++.|...|++++...|.+..+|..++.++...|+++.|+..|++++..+|.+ .++..++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666666666666666666666655555543 3444444433
No 207
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.53 E-value=8.1e-08 Score=76.41 Aligned_cols=88 Identities=8% Similarity=0.003 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-------HHHH
Q 039282 92 NHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-------QAWL 164 (476)
Q Consensus 92 ~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-------~~w~ 164 (476)
++..|...+..+...|+++.|...|++++...|.++.+|..++.++...|+++.|+..|++++..+|++ .++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 456788888888899999999999999999999888899999999888899999999999998888874 3344
Q ss_pred HHHHHHHHhhhHHHH
Q 039282 165 SYIKFELRYEQVELA 179 (476)
Q Consensus 165 ~~~~~~~~~g~~~~A 179 (476)
.++..+...|.++.|
T Consensus 83 ~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 83 RLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHhHhhh
Confidence 444444444444333
No 208
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.49 E-value=2.4e-06 Score=79.70 Aligned_cols=176 Identities=14% Similarity=0.133 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhcCCCHHHHH-------HHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 039282 77 RARSMWELALEEDCRNHTLWC-------KYAEFEMIN--------------KFINHARNVWDRAVAVLPHVDQLWYKYIR 135 (476)
Q Consensus 77 ~A~~~~eral~~~p~~~~lw~-------~y~~~e~~~--------------~~~~~A~~~~~ral~~~p~~~~lw~~~~~ 135 (476)
-...+++-.+..+|+|..+.. .|+...... ..+..|+.+|.|+.... +--
T Consensus 50 ~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y~---------~ra 120 (301)
T 3u64_A 50 LVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARYA---------LSS 120 (301)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHHH---------HHH
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHHH---------HHH
Confidence 455778888999999975544 444433222 13567788888886532 111
Q ss_pred HHHHhCCHHHHH-----HHHHHHHh-cCCCH---HHHHHHHHHHH---------HhhhHHHHHHHHHHHHHhCCC--CHH
Q 039282 136 MEEIAGNVAAAR-----LIFDRWMH-WTPDQ---QAWLSYIKFEL---------RYEQVELARQVFERLVQCHPN--VVS 195 (476)
Q Consensus 136 ~~~~~g~~~~A~-----~~~eral~-~~P~~---~~w~~~~~~~~---------~~g~~~~A~~~~~r~l~~~p~--~~~ 195 (476)
++.....+..+. .-+..++. ..|+. -+|...+.... ..+....|+..+++++.++|+ ++.
T Consensus 121 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~Gs 200 (301)
T 3u64_A 121 LETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGA 200 (301)
T ss_dssp HHHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred HHHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCH
Confidence 222222222111 12333332 23332 45666555432 124678999999999999999 677
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHH
Q 039282 196 SWIKYAKFEMRR-----GEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIED 270 (476)
Q Consensus 196 ~w~~~a~~~~~~-----g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~ 270 (476)
+|..++.+|... |+.++|+..|++|+.. .| + .....+..|++
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L-nP-----~--~~id~~v~YA~------------------------- 247 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY-CS-----A--HDPDHHITYAD------------------------- 247 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH-CC-----T--TCSHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh-CC-----C--CCchHHHHHHH-------------------------
Confidence 999999999995 9999999999999999 77 2 22444445554
Q ss_pred HHHhccCCCCchhhHHHHHH-cCCHHHHHHHHHHHHhccCC
Q 039282 271 AIVGKGKAPKDKAYIHFEKS-QGERERRRALYERLVERTKH 310 (476)
Q Consensus 271 ~i~~~~~~p~~~~~~~~~~~-~g~~e~Ar~l~e~~l~~~~~ 310 (476)
|+.. .|+.+.|+..+++++...|+
T Consensus 248 ----------------~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 248 ----------------ALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp ----------------HTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred ----------------HHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 4334 58999999999999998774
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.42 E-value=1.5e-06 Score=67.63 Aligned_cols=71 Identities=14% Similarity=-0.012 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 039282 55 VPGDTAVWINYAKWEGSQNE---FDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPH 125 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~---~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~ 125 (476)
+|.++..|..+|..+...++ .++|+.+|+++|.++|+++..++.++..+...|++..|...|++++...|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57777777777777754433 577777777777777777777777777777777777777777777777765
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.42 E-value=7.8e-07 Score=69.33 Aligned_cols=89 Identities=11% Similarity=0.017 Sum_probs=70.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhh
Q 039282 97 CKYAEFEMINKFINHARNVWDRAVAVLPHVDQ-LWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYE 174 (476)
Q Consensus 97 ~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~-lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g 174 (476)
+..+..+...|+++.|...|++++...|.+.. +|+.++.++...|+++.|+..|++++..+|++ .+|.. +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 34566778888899999999999988888888 88888888888888888888888888888875 33321 5
Q ss_pred hHHHHHHHHHHHHHhCCCC
Q 039282 175 QVELARQVFERLVQCHPNV 193 (476)
Q Consensus 175 ~~~~A~~~~~r~l~~~p~~ 193 (476)
.+.++...|++++..+|++
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 6677777777777766653
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.33 E-value=2.9e-06 Score=65.96 Aligned_cols=78 Identities=9% Similarity=-0.108 Sum_probs=69.8
Q ss_pred cCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHH
Q 039282 89 DCRNHTLWCKYAEFEMINKF---INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLS 165 (476)
Q Consensus 89 ~p~~~~lw~~y~~~e~~~~~---~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~ 165 (476)
+|.++.+|..|+.++...++ ...|+.++++++..+|+++..++.++..+...|++..|+..+++++..+|. ..|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~ 80 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRV 80 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHH
Confidence 68999999999999876655 799999999999999999999999999999999999999999999999998 55544
Q ss_pred HH
Q 039282 166 YI 167 (476)
Q Consensus 166 ~~ 167 (476)
.+
T Consensus 81 ~i 82 (93)
T 3bee_A 81 TI 82 (93)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.32 E-value=9e-06 Score=78.95 Aligned_cols=120 Identities=8% Similarity=-0.007 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC---C-----CHHHHHHHHHH--HHHhcCCCHHHHHHHHHHHHHcCCHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQ---N-----EFDRARSMWEL--ALEEDCRNHTLWCKYAEFEMINKFINH 111 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~---~-----~~~~A~~~~er--al~~~p~~~~lw~~y~~~e~~~~~~~~ 111 (476)
.+|+.+|+++++.+|.+..+|-.++.++... + ........+++ ++..+|.++.++..++......|+++.
T Consensus 216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~ 295 (372)
T 3ly7_A 216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDE 295 (372)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHH
Confidence 5899999999999999998888777666421 1 11222223332 225679999999999998888999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHH
Q 039282 112 ARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQA 162 (476)
Q Consensus 112 A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~ 162 (476)
|...+++|+.+.|. ...|..++.++...|+++.|...|++++.++|....
T Consensus 296 A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 296 SYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred HHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999985 678889999999999999999999999999999754
No 213
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.24 E-value=1.5e-05 Score=67.25 Aligned_cols=95 Identities=11% Similarity=-0.041 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQN---EFDRARSMWELALEED-C-RNHTLWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~---~~~~A~~~~eral~~~-p-~~~~lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
.+++.|+..+..+|.+.++.+.||-.++..+ ++.+++.+|+..+..+ | .+.+.++.++-.+.+.|+++.|+..++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~ 95 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 95 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 5568899999989999999999999999987 7779999999999988 7 568889999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHH
Q 039282 118 RAVAVLPHVDQLWYKYIRME 137 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~ 137 (476)
++|+..|.+.+.....-.+.
T Consensus 96 ~lL~ieP~n~QA~~Lk~~ie 115 (152)
T 1pc2_A 96 GLLQTEPQNNQAKELERLID 115 (152)
T ss_dssp HHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHH
Confidence 99999999877765544443
No 214
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.21 E-value=7e-05 Score=62.53 Aligned_cols=108 Identities=10% Similarity=-0.084 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMI----NKFINHARNVWD 117 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~----~~~~~~A~~~~~ 117 (476)
.+|...|+++....... .. ++.++...+.+++|...|+++.+. .++..+..++.++.. .+++.+|...|+
T Consensus 12 ~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 12 KKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 47888888888765333 33 788888778888888888888775 678888888888877 778888888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcC
Q 039282 118 RAVAVLPHVDQLWYKYIRMEEI----AGNVAAARLIFDRWMHWT 157 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~~~~----~g~~~~A~~~~eral~~~ 157 (476)
++... .++..++.++.++.. .++++.|...|+++.+..
T Consensus 86 ~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 86 KACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88876 567888888888877 678888888888887764
No 215
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.18 E-value=5.2e-05 Score=63.32 Aligned_cols=109 Identities=11% Similarity=-0.015 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH----hCCHHHHHHH
Q 039282 74 EFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEI----AGNVAAARLI 149 (476)
Q Consensus 74 ~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~----~g~~~~A~~~ 149 (476)
++++|...|+++.+..+.... ++.++...+.++.|...|+++... .++..++.++.++.. .++++.|...
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 567777777777766533333 666666666777777777777765 456777777777766 5666777777
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHH----hhhHHHHHHHHHHHHHh
Q 039282 150 FDRWMHWTPDQQAWLSYIKFELR----YEQVELARQVFERLVQC 189 (476)
Q Consensus 150 ~eral~~~P~~~~w~~~~~~~~~----~g~~~~A~~~~~r~l~~ 189 (476)
|+++.+. ........++.++.. .+++++|...|+++...
T Consensus 84 ~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 7666654 233455555555555 45566666666665554
No 216
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.14 E-value=1.7e-05 Score=80.98 Aligned_cols=120 Identities=11% Similarity=0.032 Sum_probs=78.3
Q ss_pred HHhCCCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHH
Q 039282 69 EGSQNEFDRARSMWELALEE-----DCRNH---TLWCKYAEFEMINKFINHARNVWDRAVAV-----LPHV---DQLWYK 132 (476)
Q Consensus 69 ~~~~~~~~~A~~~~eral~~-----~p~~~---~lw~~y~~~e~~~~~~~~A~~~~~ral~~-----~p~~---~~lw~~ 132 (476)
+..+|++++|..+|+++|.+ .|+++ .....++.++..+|++++|..++++++.. .|++ ...+..
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44678888888888888864 34443 55677777888888888888888888864 2333 445667
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhc-----CCCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039282 133 YIRMEEIAGNVAAARLIFDRWMHW-----TPDQ----QAWLSYIKFELRYEQVELARQVFERLVQ 188 (476)
Q Consensus 133 ~~~~~~~~g~~~~A~~~~eral~~-----~P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~ 188 (476)
++.++..+|++++|..+|++++.. .|++ .+...+...+...+.+.+|..+|.++..
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888888888777643 2322 2233344444455555555555555543
No 217
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.96 E-value=4.7e-05 Score=77.79 Aligned_cols=122 Identities=9% Similarity=-0.027 Sum_probs=99.8
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC-----CC---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCH----HHHH
Q 039282 102 FEMINKFINHARNVWDRAVAVL-----PH---VDQLWYKYIRMEEIAGNVAAARLIFDRWMHW-----TPDQ----QAWL 164 (476)
Q Consensus 102 ~e~~~~~~~~A~~~~~ral~~~-----p~---~~~lw~~~~~~~~~~g~~~~A~~~~eral~~-----~P~~----~~w~ 164 (476)
....+|++++|..+|++++... |+ .......++.++..+|++++|..++++++.. .|++ ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 3457899999999999999763 33 3567888899999999999999999999865 2332 5688
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 165 SYIKFELRYEQVELARQVFERLVQC-----HPNVV---SSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 165 ~~~~~~~~~g~~~~A~~~~~r~l~~-----~p~~~---~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
.++.++...|++++|..+|++++.. .|+++ ++...++..+...|.+..|..+|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999963 34544 45567777888889999999999999876
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.85 E-value=0.00017 Score=60.84 Aligned_cols=87 Identities=7% Similarity=-0.033 Sum_probs=73.0
Q ss_pred CHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CcHHHHHHHHHHHHHhCCHHHHHH
Q 039282 74 EFDRARSMWELALEEDCRNHTLWCKYAEFEMINK---FINHARNVWDRAVAVL-P-HVDQLWYKYIRMEEIAGNVAAARL 148 (476)
Q Consensus 74 ~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~---~~~~A~~~~~ral~~~-p-~~~~lw~~~~~~~~~~g~~~~A~~ 148 (476)
....+++.|.+.+..+|.+..+.+.|+..+.+.+ +++++..+|+..+... | +..+.++.++..+...|+++.|+.
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4567888888888888888899999999888887 5668889999988887 6 457788888888888888888888
Q ss_pred HHHHHHhcCCCH
Q 039282 149 IFDRWMHWTPDQ 160 (476)
Q Consensus 149 ~~eral~~~P~~ 160 (476)
.++++++..|++
T Consensus 93 y~~~lL~ieP~n 104 (152)
T 1pc2_A 93 YVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHCTTC
T ss_pred HHHHHHhcCCCC
Confidence 888888888875
No 219
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.83 E-value=0.00063 Score=59.67 Aligned_cols=130 Identities=15% Similarity=0.227 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHh---CCCC-HHHHHHHHHHHHhC---CCH--H-HHH-HHHHHHHHh---------cCCCHHHHHHHHHH
Q 039282 43 HKRNDFEDSIRR---VPGD-TAVWINYAKWEGSQ---NEF--D-RAR-SMWELALEE---------DCRNHTLWCKYAEF 102 (476)
Q Consensus 43 ~a~~~~e~~l~~---~p~~-~~~w~~~a~~~~~~---~~~--~-~A~-~~~eral~~---------~p~~~~lw~~y~~~ 102 (476)
..|..||..|.. ..+| .+.|.+|+.|.... |.. . .-. .+++|++.. ||....+|+.|+++
T Consensus 10 ~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~ 89 (202)
T 3esl_A 10 QTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINL 89 (202)
T ss_dssp HHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh
Confidence 557889988887 2333 68999999998763 332 1 233 789999974 45567999999997
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHh
Q 039282 103 EMINKFINHARNVWDRAVAVL--PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT--PDQQAWLSYIKFELRY 173 (476)
Q Consensus 103 e~~~~~~~~A~~~~~ral~~~--p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~--P~~~~w~~~~~~~~~~ 173 (476)
. ..++...++.+|.-+.... -....+|..++.+++..|++..|..+|..+++.. |-..+...|-.|..+.
T Consensus 90 ~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R~ 163 (202)
T 3esl_A 90 F-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDRL 163 (202)
T ss_dssp H-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred h-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 6 3455778999998888754 3478999999999999999999999999999876 4456666666666553
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.81 E-value=0.0003 Score=55.44 Aligned_cols=80 Identities=8% Similarity=-0.056 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 039282 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEED-------CRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQL 129 (476)
Q Consensus 57 ~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~-------p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~l 129 (476)
.+..-.+.+|..+...|++..|...|+.|+... +..+.++..++.++.+.|+++.|...+++++...|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 455667789999999999999999999999753 3457888999999999999999999999999999998887
Q ss_pred HHHHHHH
Q 039282 130 WYKYIRM 136 (476)
Q Consensus 130 w~~~~~~ 136 (476)
...+..+
T Consensus 83 ~~n~~~~ 89 (104)
T 2v5f_A 83 NGNLKYF 89 (104)
T ss_dssp HHHHHHH
T ss_pred HhhHHHH
Confidence 6666543
No 221
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.74 E-value=0.00026 Score=59.40 Aligned_cols=126 Identities=17% Similarity=0.260 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhC---CCHHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHc
Q 039282 41 RLHKRNDFEDSIRRVPGD--TAVWINYAKWEGSQ---NEFDRARSMWELALEE---------DCRNHTLWCKYAEFEMIN 106 (476)
Q Consensus 41 ~~~a~~~~e~~l~~~p~~--~~~w~~~a~~~~~~---~~~~~A~~~~eral~~---------~p~~~~lw~~y~~~e~~~ 106 (476)
...++..||..|.....+ .+.|.+|+.|.... |. ..-..+++|++.. ||....+|+.|+++.
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~--- 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYN--- 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhc---
Confidence 346778899998875333 68999999999874 44 3467889999864 344579999999863
Q ss_pred CCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHh
Q 039282 107 KFINHARNVWDRAVAVL--PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTP--DQQAWLSYIKFELRY 173 (476)
Q Consensus 107 ~~~~~A~~~~~ral~~~--p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P--~~~~w~~~~~~~~~~ 173 (476)
..++.+|.-+.... -....+|..++.+++..|++..|..+|..+++... -..+-..|..|..+.
T Consensus 82 ---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~ 149 (152)
T 4a1g_A 82 ---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQTRL 149 (152)
T ss_dssp ---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHTC
T ss_pred ---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHh
Confidence 23788888877653 34789999999999999999999999999998764 446666666666543
No 222
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.49 E-value=0.00066 Score=57.79 Aligned_cols=123 Identities=22% Similarity=0.306 Sum_probs=88.9
Q ss_pred HHHHHHHHHhCCC--CHHHHHHHHHHHHh---CCCHH-HHHHHHHHHHHh---------cCCCHHHHHHHHHHHHHcCCH
Q 039282 45 RNDFEDSIRRVPG--DTAVWINYAKWEGS---QNEFD-RARSMWELALEE---------DCRNHTLWCKYAEFEMINKFI 109 (476)
Q Consensus 45 ~~~~e~~l~~~p~--~~~~w~~~a~~~~~---~~~~~-~A~~~~eral~~---------~p~~~~lw~~y~~~e~~~~~~ 109 (476)
+..||..|..... -...|.+|+.|... .|... .-..++++++.. ||....+|+.|+++. ++
T Consensus 3 r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~---~~- 78 (164)
T 2wvi_A 3 KRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE- 78 (164)
T ss_dssp THHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC-
T ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC-
Confidence 3457777764322 26899999999876 23322 346789999875 344579999999874 33
Q ss_pred HHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHh
Q 039282 110 NHARNVWDRAVAVL--PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT--PDQQAWLSYIKFELRY 173 (476)
Q Consensus 110 ~~A~~~~~ral~~~--p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~--P~~~~w~~~~~~~~~~ 173 (476)
++.+|.-+.... -....+|..++.+++..|++..|..+|..+++.. |...+-..+..|..+.
T Consensus 79 --p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 79 --PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARV 144 (164)
T ss_dssp --HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 667887777653 3478999999999999999999999999999876 4456666777776655
No 223
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.34 E-value=0.0016 Score=58.06 Aligned_cols=125 Identities=19% Similarity=0.321 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhC---CC--HHHHHHHHHHHHHh---------cCCCHHHHHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRV---PGDTAVWINYAKWEGSQ---NE--FDRARSMWELALEE---------DCRNHTLWCKYAEFEM 104 (476)
Q Consensus 42 ~~a~~~~e~~l~~~---p~~~~~w~~~a~~~~~~---~~--~~~A~~~~eral~~---------~p~~~~lw~~y~~~e~ 104 (476)
...+..||..|... .+-...|.+|+.|.... |. -..-..+++|++.. ||....+|+.|+++.
T Consensus 52 ~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~- 130 (223)
T 4aez_C 52 QKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYI- 130 (223)
T ss_dssp HHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHcc-
Confidence 46678899888751 23478999999998873 32 12356899999975 344579999999852
Q ss_pred HcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Q 039282 105 INKFINHARNVWDRAVAVL--PHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT--PDQQAWLSYIKFELR 172 (476)
Q Consensus 105 ~~~~~~~A~~~~~ral~~~--p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~--P~~~~w~~~~~~~~~ 172 (476)
+.++.+|.-+.... -....+|..++.+++..|++..|..+|..+++.. |-..+-..|..|..+
T Consensus 131 -----~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 131 -----DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp -----SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 46677888777654 3478999999999999999999999999999876 444666666666544
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.33 E-value=0.002 Score=50.54 Aligned_cols=74 Identities=5% Similarity=-0.025 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-------C-CHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 039282 128 QLWYKYIRMEEIAGNVAAARLIFDRWMHWT-------P-DQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIK 199 (476)
Q Consensus 128 ~lw~~~~~~~~~~g~~~~A~~~~eral~~~-------P-~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~ 199 (476)
.-++.+|..+...|++..|...|+.++... + ...++..++..+.+.|+++.|...+++++...|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 334455555555555555555555555432 1 12455555556666666666666666666666665555444
Q ss_pred HH
Q 039282 200 YA 201 (476)
Q Consensus 200 ~a 201 (476)
+.
T Consensus 86 ~~ 87 (104)
T 2v5f_A 86 LK 87 (104)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 225
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.32 E-value=0.00072 Score=67.82 Aligned_cols=84 Identities=13% Similarity=0.097 Sum_probs=71.9
Q ss_pred hCCHHHHHHHHHHHHhc-----CCCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Q 039282 140 AGNVAAARLIFDRWMHW-----TPDQ----QAWLSYIKFELRYEQVELARQVFERLVQC--------HPNVVSSWIKYAK 202 (476)
Q Consensus 140 ~g~~~~A~~~~eral~~-----~P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~--------~p~~~~~w~~~a~ 202 (476)
.|++++|..+|++++.. .|++ .....++..+...|++++|..+|++++.. ||+....+.++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 47899999999999875 3443 56788889999999999999999999964 4444566889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHh
Q 039282 203 FEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 203 ~~~~~g~~~~A~~~~e~al~~ 223 (476)
++..+|++++|..+|++|++.
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999999987
No 226
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.31 E-value=0.00084 Score=67.34 Aligned_cols=85 Identities=14% Similarity=0.060 Sum_probs=57.4
Q ss_pred hCCCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCC---cHHHHHHHH
Q 039282 71 SQNEFDRARSMWELALEE-----DCRNH---TLWCKYAEFEMINKFINHARNVWDRAVAV-----LPH---VDQLWYKYI 134 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~-----~p~~~---~lw~~y~~~e~~~~~~~~A~~~~~ral~~-----~p~---~~~lw~~~~ 134 (476)
..|++++|..+|+++|.+ .|+++ .....++.++..+|++++|..++++++.. .|+ ....++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357778888888888763 34444 44566777777778888888888877754 233 334566667
Q ss_pred HHHHHhCCHHHHHHHHHHHHh
Q 039282 135 RMEEIAGNVAAARLIFDRWMH 155 (476)
Q Consensus 135 ~~~~~~g~~~~A~~~~eral~ 155 (476)
.++..+|++++|..+|++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 777777777777777777664
No 227
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.10 E-value=0.03 Score=49.07 Aligned_cols=81 Identities=14% Similarity=0.240 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHH
Q 039282 161 QAWLSYIKFELRYEQVELARQVFERLVQCH--PNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQ 238 (476)
Q Consensus 161 ~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~--p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~ 238 (476)
.+|..|+.+. ..++...++.+|.-+.... -.....|..||.++...|++.+|..||+.+|+. .. .....
T Consensus 81 klWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A-------~P~~r 151 (202)
T 3esl_A 81 KIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NC-------RPYNR 151 (202)
T ss_dssp HHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC-------BSHHH
T ss_pred HHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC-------ccHHH
Confidence 4455555543 1222345555555555433 345788999999999999999999999999998 33 34566
Q ss_pred HHHHHHHHHHHc
Q 039282 239 LFVAFAEFEERY 250 (476)
Q Consensus 239 l~~~~a~~e~~~ 250 (476)
+-..+..|..+.
T Consensus 152 L~~~~~~F~~R~ 163 (202)
T 3esl_A 152 LLRSLSNYEDRL 163 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776653
No 228
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.10 E-value=0.0083 Score=48.61 Aligned_cols=94 Identities=12% Similarity=-0.070 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCHH---HHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 039282 43 HKRNDFEDSIRRVPGDTAVWINYAKWEGSQNEFD---RARSMWELALEED-C-RNHTLWCKYAEFEMINKFINHARNVWD 117 (476)
Q Consensus 43 ~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~~~~---~A~~~~eral~~~-p-~~~~lw~~y~~~e~~~~~~~~A~~~~~ 117 (476)
..+..|+..+..++.+..+-+.||-.++...+.. +++.+++..+..+ | ..-...+.++-...+.|++..|+..++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 5567888888888888889999998888765544 4888888888765 4 345666667777888899999999999
Q ss_pred HHHHhCCCcHHHHHHHHHH
Q 039282 118 RAVAVLPHVDQLWYKYIRM 136 (476)
Q Consensus 118 ral~~~p~~~~lw~~~~~~ 136 (476)
.+|...|.+.++...-..+
T Consensus 99 ~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 99 GLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHH
Confidence 9999999877765544433
No 229
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0037 Score=62.63 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=72.6
Q ss_pred HHhCCHHHHHHHHHHHHhcC-----CCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CCCCHHHHHHH
Q 039282 138 EIAGNVAAARLIFDRWMHWT-----PDQ----QAWLSYIKFELRYEQVELARQVFERLVQC--------HPNVVSSWIKY 200 (476)
Q Consensus 138 ~~~g~~~~A~~~~eral~~~-----P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~--------~p~~~~~w~~~ 200 (476)
...|++++|+..+++++... |++ .....++..+...|++++|..++++++.. ||.....+.++
T Consensus 298 ~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 298 KAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred HhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 35689999999999999753 332 56888888999999999999999999963 33445668899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 039282 201 AKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 201 a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
|.++..+|++++|..+|++|++.
T Consensus 378 a~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987
No 230
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.88 E-value=0.0044 Score=62.09 Aligned_cols=85 Identities=8% Similarity=-0.065 Sum_probs=47.5
Q ss_pred hCCCHHHHHHHHHHHHHh-----cCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCc---HHHHHHHH
Q 039282 71 SQNEFDRARSMWELALEE-----DCRNH---TLWCKYAEFEMINKFINHARNVWDRAVAV-----LPHV---DQLWYKYI 134 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~-----~p~~~---~lw~~y~~~e~~~~~~~~A~~~~~ral~~-----~p~~---~~lw~~~~ 134 (476)
.+|++++|...|+++|.+ .|+++ .+...++.++..+|++++|..++++++.. .|.+ ...++.++
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 456666666666666643 23333 44555555666666666666666666643 1222 33455555
Q ss_pred HHHHHhCCHHHHHHHHHHHHh
Q 039282 135 RMEEIAGNVAAARLIFDRWMH 155 (476)
Q Consensus 135 ~~~~~~g~~~~A~~~~eral~ 155 (476)
.++..+|++++|..+|++++.
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 556666666666666655543
No 231
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.83 E-value=0.01 Score=49.72 Aligned_cols=75 Identities=24% Similarity=0.320 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHH
Q 039282 161 QAWLSYIKFELRYEQVELARQVFERLVQCH--PNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQ 238 (476)
Q Consensus 161 ~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~--p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~ 238 (476)
.+|..|+.+. +.++.+|.-+.... -.....|..||.++...|++.+|..||+.+|+. .. .....
T Consensus 72 klWl~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A-------~P~~r 137 (152)
T 4a1g_A 72 SYCLKFAEYN------SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN-QA-------EPREF 137 (152)
T ss_dssp HHHHHHHTTB------SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC-------BSHHH
T ss_pred HHHHHHHHhc------CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC-------ccHHH
Confidence 4555555542 22555665555433 345788999999999999999999999999998 33 34566
Q ss_pred HHHHHHHHHHH
Q 039282 239 LFVAFAEFEER 249 (476)
Q Consensus 239 l~~~~a~~e~~ 249 (476)
|-..+..|..+
T Consensus 138 L~~~~~~F~~R 148 (152)
T 4a1g_A 138 LQQQYRLFQTR 148 (152)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 77777777655
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.70 E-value=0.03 Score=45.29 Aligned_cols=85 Identities=5% Similarity=-0.033 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CcHHHHHHHHHHHHHhCCHHHHHHH
Q 039282 75 FDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINH---ARNVWDRAVAVL-P-HVDQLWYKYIRMEEIAGNVAAARLI 149 (476)
Q Consensus 75 ~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~---A~~~~~ral~~~-p-~~~~lw~~~~~~~~~~g~~~~A~~~ 149 (476)
...++..|.+.+..++.+...-+.|+..+.+.++..+ +..+++..+... | ..-...+.++..+.+.|+++.|+..
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4455555555555555555555566655555554333 555555555443 2 2233344444444455555555555
Q ss_pred HHHHHhcCCC
Q 039282 150 FDRWMHWTPD 159 (476)
Q Consensus 150 ~eral~~~P~ 159 (476)
++..|+..|+
T Consensus 97 ~~~lL~~eP~ 106 (126)
T 1nzn_A 97 VRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhCCC
Confidence 5555555554
No 233
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.65 E-value=0.031 Score=49.82 Aligned_cols=137 Identities=15% Similarity=0.268 Sum_probs=81.8
Q ss_pred CHHHHHHHHHHHHHh--c-CCCHHHHHHHHHHHHHc---CC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHH
Q 039282 74 EFDRARSMWELALEE--D-CRNHTLWCKYAEFEMIN---KF--INHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAA 145 (476)
Q Consensus 74 ~~~~A~~~~eral~~--~-p~~~~lw~~y~~~e~~~---~~--~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~ 145 (476)
.....+..||..|.. . .+-..+|..|+.....+ |. -..-..++++|+....++...
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rY---------------- 113 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLY---------------- 113 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGG----------------
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccc----------------
Confidence 356777888888754 1 23357788888865543 21 112446777777665432100
Q ss_pred HHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 146 ARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSWIKYAKFEMRRGEIDRARNVYERALE 222 (476)
Q Consensus 146 A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~--~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~ 222 (476)
..+|.. .+|..|+.+. +.++.+|.-+... .-.....|..||.++...|++.+|..||..+|+
T Consensus 114 ---------knD~RyLklWl~Ya~~~------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~ 178 (223)
T 4aez_C 114 ---------KDDVRYLRIWMQYVNYI------DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKR 178 (223)
T ss_dssp ---------TTCHHHHHHHHHHHTTC------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------cCCHHHHHHHHHHHHcc------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000000 3444444431 2334444444433 234578899999999999999999999999999
Q ss_pred hhcCCCCCCChhhHHHHHHHHHHHHHH
Q 039282 223 KKLADGDGDDDEGAEQLFVAFAEFEER 249 (476)
Q Consensus 223 ~~~p~~~~~~~~~~~~l~~~~a~~e~~ 249 (476)
. .. .....|-..|..|..+
T Consensus 179 ~-~A-------~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 179 M-KA-------KPFLRFQQKYQQFTHR 197 (223)
T ss_dssp H-TC-------BSHHHHHHHHHHHHHH
T ss_pred c-CC-------ccHHHHHHHHHHHHHH
Confidence 8 43 2456677777777665
No 234
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.37 E-value=0.036 Score=47.08 Aligned_cols=76 Identities=17% Similarity=0.298 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHH
Q 039282 161 QAWLSYIKFELRYEQVELARQVFERLVQC--HPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQ 238 (476)
Q Consensus 161 ~~w~~~~~~~~~~g~~~~A~~~~~r~l~~--~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~ 238 (476)
.+|..|+.+. +.++.+|.-+... .-..+..|..||.++...|++..|..||..+|+. .. .....
T Consensus 67 klWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~-~A-------~P~~~ 132 (164)
T 2wvi_A 67 NLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ-KA-------EPLER 132 (164)
T ss_dssp HHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC-------BSHHH
T ss_pred HHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CC-------CcHHH
Confidence 4555555542 2244555555443 2345788999999999999999999999999998 33 34566
Q ss_pred HHHHHHHHHHHc
Q 039282 239 LFVAFAEFEERY 250 (476)
Q Consensus 239 l~~~~a~~e~~~ 250 (476)
|-..+..|..+.
T Consensus 133 L~~~~~~F~~R~ 144 (164)
T 2wvi_A 133 LQSQHRQFQARV 144 (164)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
No 235
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=95.88 E-value=0.15 Score=55.63 Aligned_cols=95 Identities=11% Similarity=0.038 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHHHHH
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVA-----VLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHW--TPDQQAWLSY 166 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~-----~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~--~P~~~~w~~~ 166 (476)
..+..+++.+.+.|+++.|..+|+.+-. ..|+ ...|+.++..+...|++++|..+|+++... .|+.-.+..+
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3466666666677777777777755432 2343 566666666666667777777777666543 3555666666
Q ss_pred HHHHHHhhh-HHHHHHHHHHHHHh
Q 039282 167 IKFELRYEQ-VELARQVFERLVQC 189 (476)
Q Consensus 167 ~~~~~~~g~-~~~A~~~~~r~l~~ 189 (476)
+..+.+.|. .+.|..+|+.+...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHc
Confidence 666666665 35666666666654
No 236
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.63 E-value=0.17 Score=41.11 Aligned_cols=100 Identities=10% Similarity=-0.126 Sum_probs=71.4
Q ss_pred CChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcC
Q 039282 32 VDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQN---EFDRARSMWELALEEDCR-NHTLWCKYAEFEMINK 107 (476)
Q Consensus 32 ~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~---~~~~A~~~~eral~~~p~-~~~lw~~y~~~e~~~~ 107 (476)
.+.++|.-++ +.|+.-+.-. -+..+-+.||-.++... +..+++.+++..+..+|. .-..++-++-...+.|
T Consensus 18 ~~~eeL~~l~----~qy~~E~~~~-vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklg 92 (134)
T 3o48_A 18 LYPQQLEILR----QQVVSEGGPT-ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG 92 (134)
T ss_dssp CCHHHHHHHH----HHHHHTTGGG-SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHH----HHHHHHhCCC-CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhh
Confidence 4556665543 5565544222 36788888888777654 456788999998888874 4567777777888899
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 039282 108 FINHARNVWDRAVAVLPHVDQLWYKYIRM 136 (476)
Q Consensus 108 ~~~~A~~~~~ral~~~p~~~~lw~~~~~~ 136 (476)
++..|+...+++|...|.+.++-..-..+
T Consensus 93 dY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 93 EYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 99999999999999999877665444333
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.49 E-value=0.29 Score=40.26 Aligned_cols=100 Identities=10% Similarity=-0.129 Sum_probs=72.2
Q ss_pred CChHHhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcC
Q 039282 32 VDPTELYDYRLHKRNDFEDSIRRVPGDTAVWINYAKWEGSQN---EFDRARSMWELALEEDCRN-HTLWCKYAEFEMINK 107 (476)
Q Consensus 32 ~d~eel~e~~~~a~~~~e~~l~~~p~~~~~w~~~a~~~~~~~---~~~~A~~~~eral~~~p~~-~~lw~~y~~~e~~~~ 107 (476)
.++++|...+ ..|+.-+. ..-+...-+.||-.++... +..+++.+++..+...|.. -.-.+.++-...+.|
T Consensus 17 l~~eeL~~lr----~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~ 91 (144)
T 1y8m_A 17 LYPQQLEILR----QQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLG 91 (144)
T ss_dssp CCHHHHHHHH----HHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHH----HHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhh
Confidence 4566666554 55655422 3457888889998888754 4568999999999888854 455555666788899
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 039282 108 FINHARNVWDRAVAVLPHVDQLWYKYIRM 136 (476)
Q Consensus 108 ~~~~A~~~~~ral~~~p~~~~lw~~~~~~ 136 (476)
++..|+.+.+.+|+..|.+.++-..-..+
T Consensus 92 ~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 92 EYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999999999999999887665444333
No 238
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.41 E-value=0.17 Score=42.89 Aligned_cols=62 Identities=16% Similarity=0.035 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 61 VWINYAKWEGSQNEFDRARSMWELALEEDCRN---------HTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 61 ~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~---------~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
+.+.-++.....|.++.|+-+..-++.+...+ ..+...+++.+...+++..|...|++||..
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44555666777888999998888877553222 246778888899999999999999998765
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.31 E-value=1.9 Score=45.96 Aligned_cols=75 Identities=13% Similarity=0.072 Sum_probs=48.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCC
Q 039282 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGN 142 (476)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~ 142 (476)
...+.++...|..+.|..+.+ ++..- ..+.+..|+++.|..+.+ ...++..|..++.++...++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCC
Confidence 566666667777666665442 22111 223456677777777643 23457888888888888888
Q ss_pred HHHHHHHHHHH
Q 039282 143 VAAARLIFDRW 153 (476)
Q Consensus 143 ~~~A~~~~era 153 (476)
++.|..+|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 88888888776
No 240
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.09 E-value=1.4 Score=37.70 Aligned_cols=126 Identities=10% Similarity=0.012 Sum_probs=82.3
Q ss_pred HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHH
Q 039282 70 GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLI 149 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~ 149 (476)
++.|+++.|.++.+.. ++...|..+++.-+..|+++-|...|.++= + +-.+..++...|+.+.-..+
T Consensus 16 L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----D----~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH----S----FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----C----HHHHHHHHHHHTCHHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----C----HHHHHHHHHHhCCHHHHHHH
Confidence 5689999999887764 678899999999999999998888888762 3 23334445566887776655
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 150 FDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220 (476)
Q Consensus 150 ~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~a 220 (476)
-+.+....-. ..-.....-.|+++++..+|.+.-. |-.-+.+...+|-.+.|.++.+.+
T Consensus 83 a~iA~~~g~~----n~af~~~l~lGdv~~~i~lL~~~~r--------~~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTREDF----GSMLLNTFYNNSTKERSSIFAEGGS--------LPLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHTTCH----HHHHHHHHHHTCHHHHHHHHHHTTC--------HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHCccH----HHHHHHHHHcCCHHHHHHHHHHCCC--------hHHHHHHHHHcCcHHHHHHHHHHh
Confidence 5555433322 2222334567888888888866311 222233344567777777776543
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.97 E-value=0.15 Score=54.27 Aligned_cols=59 Identities=19% Similarity=0.201 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 162 AWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220 (476)
Q Consensus 162 ~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~a 220 (476)
+...-+.|+...|+++-|..+-++++...|.....|..++..|...|+++.|.-.+..|
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 55666788888999999999999999999999999999999999999999999777655
No 242
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=94.75 E-value=0.43 Score=52.11 Aligned_cols=98 Identities=4% Similarity=-0.107 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEE----DCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV--LPHVDQLWYK 132 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~----~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~--~p~~~~lw~~ 132 (476)
...+..++..+...|++++|..+|...-.. ..-|+..|..++..+.+.|++++|..+|+.+... .|+ ...+..
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD-vvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD-LLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc-HHHHHH
Confidence 346889999999999999999999775432 2446889999999999999999999999999875 454 777888
Q ss_pred HHHHHHHhCC-HHHHHHHHHHHHhcC
Q 039282 133 YIRMEEIAGN-VAAARLIFDRWMHWT 157 (476)
Q Consensus 133 ~~~~~~~~g~-~~~A~~~~eral~~~ 157 (476)
++..+.+.|. .+.|..+|+.+....
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8888888887 578899999988765
No 243
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.66 E-value=0.66 Score=49.60 Aligned_cols=129 Identities=9% Similarity=-0.051 Sum_probs=77.2
Q ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------hCCCcHHHHHHHHHHHHH
Q 039282 68 WEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA--------VLPHVDQLWYKYIRMEEI 139 (476)
Q Consensus 68 ~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~--------~~p~~~~lw~~~~~~~~~ 139 (476)
..+..|+++.|.++... ..+...|..++++.+..++++.|..+|.++=. ....+...+..++.....
T Consensus 661 ~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 34667899999887543 46789999999999999999999999998721 112233444444555555
Q ss_pred hCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHH
Q 039282 140 AGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNV---VSSWIKYAKFEMRRGEID 211 (476)
Q Consensus 140 ~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~---~~~w~~~a~~~~~~g~~~ 211 (476)
.|++..|..+|.+. .-+..-++++...++++.|..+-++ ..|.. +.+...|+..+...|+..
T Consensus 736 ~~~~~~A~~~~~~~-------g~~~~a~~~~~~~~~~~~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~~~~ 800 (814)
T 3mkq_A 736 TGKFNLAFNAYWIA-------GDIQGAKDLLIKSQRFSEAAFLGST---YGLGDNEVNDIVTKWKENLILNGKNT 800 (814)
T ss_dssp TTCHHHHHHHHHHH-------TCHHHHHHHHHHTTCHHHHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred cCchHHHHHHHHHc-------CCHHHHHHHHHHcCChHHHHHHHHH---hCCChHHHHHHHHHHHHHHHhccchh
Confidence 55555555444332 1123344455555555555555444 23331 245555666666666543
No 244
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.13 E-value=0.94 Score=38.81 Aligned_cols=101 Identities=9% Similarity=0.052 Sum_probs=65.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHH
Q 039282 102 FEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQ 181 (476)
Q Consensus 102 ~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~ 181 (476)
+-+..|+++.|..+.+.. ++...|..++......|+++-|..+|.++-. +..+.-++.-.|+.++-..
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHHH
Confidence 346778999998887654 5688899999999999999999999988732 2333334455666666555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 182 VFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219 (476)
Q Consensus 182 ~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~ 219 (476)
+-+.+....-. ..-...+...|+++++.++|.+
T Consensus 82 la~iA~~~g~~-----n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTREDF-----GSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTTCH-----HHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCccH-----HHHHHHHHHcCCHHHHHHHHHH
Confidence 54444332111 1122334456777777777754
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.12 E-value=0.36 Score=39.19 Aligned_cols=84 Identities=8% Similarity=-0.100 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhCCHHHHHHHHH
Q 039282 76 DRARSMWELALEEDCRNHTLWCKYAEFEMINKF---INHARNVWDRAVAVLP-HVDQLWYKYIRMEEIAGNVAAARLIFD 151 (476)
Q Consensus 76 ~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~---~~~A~~~~~ral~~~p-~~~~lw~~~~~~~~~~g~~~~A~~~~e 151 (476)
...++.|++=+ ...-++..-+.|+..+.+.++ ...+..+++..+...| +.-..++.++.-+..+|+++.|+...+
T Consensus 24 ~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d 102 (134)
T 3o48_A 24 EILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 102 (134)
T ss_dssp HHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34445554433 222356667777777766655 3456777777777666 345666666666777777777777777
Q ss_pred HHHhcCCCH
Q 039282 152 RWMHWTPDQ 160 (476)
Q Consensus 152 ral~~~P~~ 160 (476)
..++..|++
T Consensus 103 ~lL~~eP~N 111 (134)
T 3o48_A 103 TLFEHERNN 111 (134)
T ss_dssp HHHTTCTTC
T ss_pred HHHhhCCCC
Confidence 777777765
No 246
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.09 E-value=0.31 Score=51.88 Aligned_cols=112 Identities=10% Similarity=0.013 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhCCCCHHH-HHHHHHHHHhCC-CHHHHHHHHHHHHHh--------cCCC----------HHHHHHHHH
Q 039282 42 LHKRNDFEDSIRRVPGDTAV-WINYAKWEGSQN-EFDRARSMWELALEE--------DCRN----------HTLWCKYAE 101 (476)
Q Consensus 42 ~~a~~~~e~~l~~~p~~~~~-w~~~a~~~~~~~-~~~~A~~~~eral~~--------~p~~----------~~lw~~y~~ 101 (476)
+.+...|++....+|..... ...++......+ .--+|.++...+++. .+.+ ..+...-++
T Consensus 266 ~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~ 345 (754)
T 4gns_B 266 DFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTN 345 (754)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHH
Confidence 46888999999999976432 222333222222 334577777776631 2222 345666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 039282 102 FEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRW 153 (476)
Q Consensus 102 ~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~era 153 (476)
+++..|+++-|..+-++|+...|..-..|+.++.++..+|+++.|.-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 8889999999999999999999999999999999999999999999877655
No 247
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.94 E-value=1.1 Score=43.83 Aligned_cols=155 Identities=9% Similarity=0.045 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-----HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCH-HHH------
Q 039282 97 CKYAEFEMINKFINHARNVWDRAVAVLPHV-----DQLWYKYIRMEEI-AGNVAAARLIFDRWMHWTPDQ-QAW------ 163 (476)
Q Consensus 97 ~~y~~~e~~~~~~~~A~~~~~ral~~~p~~-----~~lw~~~~~~~~~-~g~~~~A~~~~eral~~~P~~-~~w------ 163 (476)
+.++.++...|+.+....++.......+.. .++-..++..... .+..+.-..++..+++|.-.. ..|
T Consensus 23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~ 102 (394)
T 3txn_A 23 LQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLE 102 (394)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555443332221 2222233333222 244555566777777665443 334
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--c-CCCCCCChh
Q 039282 164 LSYIKFELRYEQVELARQVFERLVQCHPN--V----VSSWIKYAKFEMRRGEIDRARNVYERALEKK--L-ADGDGDDDE 234 (476)
Q Consensus 164 ~~~~~~~~~~g~~~~A~~~~~r~l~~~p~--~----~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~--~-p~~~~~~~~ 234 (476)
..++.++...|++.+|..++.+.+..+.. + .+++..-+.++...|++.+++..|..|.... . + ++.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~-----~p~ 177 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC-----PPK 177 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-----CHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC-----CHH
Confidence 26788999999999999999998886543 1 3556666778889999999999999997651 1 3 334
Q ss_pred hHHHHHHHHHHHHH-HccchhHH
Q 039282 235 GAEQLFVAFAEFEE-RYKESESE 256 (476)
Q Consensus 235 ~~~~l~~~~a~~e~-~~~~~e~A 256 (476)
....+...-+.++. ..++|..|
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A 200 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTA 200 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHH
Confidence 45666677777788 78999988
No 248
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.61 E-value=1.1 Score=43.85 Aligned_cols=100 Identities=13% Similarity=0.049 Sum_probs=59.4
Q ss_pred hCCCHHHHHHHHHHHHHhcCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHH
Q 039282 71 SQNEFDRARSMWELALEEDCRNH------TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVA 144 (476)
Q Consensus 71 ~~~~~~~A~~~~eral~~~p~~~------~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~ 144 (476)
..|+.+.|...+++|+.+..... ..|..- .+.-++... ..+...++..+...|++.
T Consensus 127 ~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~------------~r~~l~~~~------~~a~~~~~~~~l~~g~~~ 188 (388)
T 2ff4_A 127 AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEP------------FATALVEDK------VLAHTAKAEAEIACGRAS 188 (388)
T ss_dssp HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHH------------HHHHHHHHH------HHHHHHHHHHHHHTTCHH
T ss_pred hCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHH------------HHHHHHHHH------HHHHHHHHHHHHHCCCHH
Confidence 46788899999999997643211 112211 011111110 112334555566667777
Q ss_pred HHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 039282 145 AARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQ 188 (476)
Q Consensus 145 ~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~ 188 (476)
.|...+.+++..+|-. .+|..++..+.+.|+...|...|+++..
T Consensus 189 ~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 189 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777754 5677777777777777777777766654
No 249
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.98 E-value=7.2 Score=37.99 Aligned_cols=138 Identities=8% Similarity=0.004 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCH---HHHHHHHHHHHH-hhhHHHHHHHHHHHHHhCCCCHHHHH-
Q 039282 127 DQLWYKYIRMEEIAGNVAAARLIFDRWMHWT---PDQ---QAWLSYIKFELR-YEQVELARQVFERLVQCHPNVVSSWI- 198 (476)
Q Consensus 127 ~~lw~~~~~~~~~~g~~~~A~~~~eral~~~---P~~---~~w~~~~~~~~~-~g~~~~A~~~~~r~l~~~p~~~~~w~- 198 (476)
....+.++.++...|+.++...++......- |.. .+-..++.+... .+..+.-..++..+++-.-+.-..|+
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999988887764433 222 334445544433 24455556666666654443334453
Q ss_pred -----HHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHHccchhHHHHHHHhCChHHHHHHHH
Q 039282 199 -----KYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEERYKESESEALRKEFGDWVLIEDAIV 273 (476)
Q Consensus 199 -----~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~~~~~e~A~~ek~~g~~~~~~~~i~ 273 (476)
+++.++...|++.+|..++.+..+. +. ...+...+...++
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~-~~-----~~dd~~~llev~l----------------------------- 143 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRE-LK-----KLDDKNLLVEVQL----------------------------- 143 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HT-----TSSCTHHHHHHHH-----------------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-Hh-----ccccchhHHHHHH-----------------------------
Confidence 7899999999999999999999998 76 2112222222221
Q ss_pred hccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhcc
Q 039282 274 GKGKAPKDKAYIHFEKSQGERERRRALYERLVERT 308 (476)
Q Consensus 274 ~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~ 308 (476)
.-+.++...|++.+++.+|.++....
T Consensus 144 ---------le~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 144 ---------LESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp ---------HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 12355668899999999999987553
No 250
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=92.97 E-value=0.73 Score=37.85 Aligned_cols=84 Identities=8% Similarity=-0.103 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhCCHHHHHHHHH
Q 039282 76 DRARSMWELALEEDCRNHTLWCKYAEFEMINKF---INHARNVWDRAVAVLPH-VDQLWYKYIRMEEIAGNVAAARLIFD 151 (476)
Q Consensus 76 ~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~---~~~A~~~~~ral~~~p~-~~~lw~~~~~~~~~~g~~~~A~~~~e 151 (476)
...+..|++-+. +.-++..-+.|+..+.+.++ ..++..+++..+...|. .-...+.++.-+.++|+++.|+...+
T Consensus 23 ~~lr~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 23 EILRQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp HHHHHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444444311 23456666677776666654 34566666666666663 33444555555566666666666666
Q ss_pred HHHhcCCCH
Q 039282 152 RWMHWTPDQ 160 (476)
Q Consensus 152 ral~~~P~~ 160 (476)
..|+..|++
T Consensus 102 ~lL~~eP~n 110 (144)
T 1y8m_A 102 TLFEHERNN 110 (144)
T ss_dssp HHHHTCCCC
T ss_pred HHHhcCCCc
Confidence 666666654
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.55 E-value=1.4 Score=37.12 Aligned_cols=113 Identities=7% Similarity=-0.135 Sum_probs=69.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---CCHHHH
Q 039282 96 WCKYAEFEMINKFINHARNVWDRAVAVLPHV---------DQLWYKYIRMEEIAGNVAAARLIFDRWMHWT---PDQQAW 163 (476)
Q Consensus 96 w~~y~~~e~~~~~~~~A~~~~~ral~~~p~~---------~~lw~~~~~~~~~~g~~~~A~~~~eral~~~---P~~~~w 163 (476)
.+.-+......|.++.|+-+...++....++ .++...++......+++..|...|.++|+.. |....
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s- 101 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK- 101 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC-
Confidence 4445556778899999999998877654222 2367778888889999999999999987542 11100
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 164 LSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYER 219 (476)
Q Consensus 164 ~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~ 219 (476)
.+... + ...-+..-... +.+.++-++.+.++...|+.+.|..+++.
T Consensus 102 -~~~~~----~----~~ss~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 102 -VRPST----G----NSASTPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred -ccccc----c----ccCCCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 00000 0 00000000111 23357778888888888888888888775
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.26 E-value=5.1 Score=36.66 Aligned_cols=118 Identities=11% Similarity=0.124 Sum_probs=78.0
Q ss_pred HHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHH
Q 039282 68 WEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAAR 147 (476)
Q Consensus 68 ~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~ 147 (476)
-.+..|+++.|++.....++.+|.|..+-..+.++++-.|++++|..-++-+.++.|.....-..|...... +..|
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----E~~R 81 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----AQAR 81 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----HHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH----HHHH
Confidence 345678888999999999999999999988899998999999999999999988888754433333222110 1111
Q ss_pred HHHHHHHh--cCC----CHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHhCCC
Q 039282 148 LIFDRWMH--WTP----DQQAWLSYI---KFELRYEQVELARQVFERLVQCHPN 192 (476)
Q Consensus 148 ~~~eral~--~~P----~~~~w~~~~---~~~~~~g~~~~A~~~~~r~l~~~p~ 192 (476)
. .++. ..| .+..|.... ......|+.++|..+-.+++...|.
T Consensus 82 ~---~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 82 K---DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp H---HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred H---HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 1 1111 111 113344433 2334568888998888888887765
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.08 E-value=0.54 Score=46.73 Aligned_cols=64 Identities=11% Similarity=0.151 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 59 TAVWINYAKWEGSQNEFDRARSMWELALEEDCR---NHTLWCKYAEFEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 59 ~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~---~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~ 122 (476)
..++..+|.++...|+++.|.++|.++...... -..+++..+.+....+++.+|...+.++-..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 457889999999999999999999998865433 3688888888888899999999998888655
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=90.07 E-value=7.3 Score=35.64 Aligned_cols=124 Identities=12% Similarity=0.151 Sum_probs=79.7
Q ss_pred HHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcCCCCCCChhhHHHHHHHHHHHHHH
Q 039282 170 ELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEKKLADGDGDDDEGAEQLFVAFAEFEER 249 (476)
Q Consensus 170 ~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p~~~~~~~~~~~~l~~~~a~~e~~ 249 (476)
..+.|.++.|++.....|+..|.+...-..+..++.-.|++++|..-++.+.+. .| +......+|...+..|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l-~p-----~~~~~a~~yr~lI~aE~~ 80 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL-FP-----EYLPGASQLRHLVKAAQA 80 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CG-----GGHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-Cc-----hhhHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999988 77 333334455555554443
Q ss_pred ccchhHH-HHHHHhCChHHHHHHHHhccCCCCchhhHHHHHHcCCHHHHHHHHHHHHhccC
Q 039282 250 YKESESE-ALRKEFGDWVLIEDAIVGKGKAPKDKAYIHFEKSQGERERRRALYERLVERTK 309 (476)
Q Consensus 250 ~~~~e~A-~~ek~~g~~~~~~~~i~~~~~~p~~~~~~~~~~~~g~~e~Ar~l~e~~l~~~~ 309 (476)
..++=.. ..-..+|........+ .-+......|+.+.|..+=.++++..|
T Consensus 81 R~~vfaG~~~P~~~g~~~~w~~~l----------l~Al~~~~~G~~~~A~~lr~~A~e~ap 131 (273)
T 1zbp_A 81 RKDFAQGAATAKVLGENEELTKSL----------VSFNLSMVSQDYEQVSELALQIEELRQ 131 (273)
T ss_dssp HHHHTTSCCCEECCCSCHHHHHHH----------HHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHcCCCCCCCCCCCHHHHHHH----------HHHHHHhhcCCHHHHHHHHHHHHhcCc
Confidence 2110000 0000011111111110 011223357999999999999988866
No 255
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.85 E-value=1.3 Score=43.22 Aligned_cols=61 Identities=15% Similarity=0.062 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWM 154 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral 154 (476)
.+...+++.+...|++..|...+.+++..+|-+..+|..+...+...|+...|...|+++-
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456677888889999999999999999999989999999999999999999988887764
No 256
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.35 E-value=11 Score=42.20 Aligned_cols=172 Identities=11% Similarity=-0.008 Sum_probs=108.8
Q ss_pred HHhCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---c--------------------CCCHHHHHHHHHHHHHcCC
Q 039282 52 IRRVPGDTAVWINYAKWEGSQNEFDRARSMWELALEE---D--------------------CRNHTLWCKYAEFEMINKF 108 (476)
Q Consensus 52 l~~~p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~---~--------------------p~~~~lw~~y~~~e~~~~~ 108 (476)
+.-.|.++..-+..|.++...|++++|..+|++|-.- + ..-+..+...+.+....+.
T Consensus 835 ~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~ 914 (1139)
T 4fhn_B 835 IGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA 914 (1139)
T ss_dssp HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSC
T ss_pred hhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCC
Confidence 3445667666678899999999999999999887311 0 1123556777778888899
Q ss_pred HHHHHHHHHHHHHhCCC-cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh--------
Q 039282 109 INHARNVWDRAVAVLPH-VD----QLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQ-------- 175 (476)
Q Consensus 109 ~~~A~~~~~ral~~~p~-~~----~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~-------- 175 (476)
++.+...-..|+...+. ++ .+|..+-......|+++.|-..+-..-...-..+....++.-....|.
T Consensus 915 ~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~lp 994 (1139)
T 4fhn_B 915 YIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNYS 994 (1139)
T ss_dssp CHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhCCC
Confidence 99999999999987654 22 378888888999999998877776553322223444555544443332
Q ss_pred ----HHHHHHHHHH-HHHh-CCCC-HHHHHHHHHHHHHcCCHH-HHHHHHHHHHHh
Q 039282 176 ----VELARQVFER-LVQC-HPNV-VSSWIKYAKFEMRRGEID-RARNVYERALEK 223 (476)
Q Consensus 176 ----~~~A~~~~~r-~l~~-~p~~-~~~w~~~a~~~~~~g~~~-~A~~~~e~al~~ 223 (476)
.+..-.++.. +-.. .+.+ +..+.-+-.|+..+|++- .|..+|+++.+.
T Consensus 995 f~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 995 MPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 2233233321 1111 2222 344444566677777764 566677776654
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=83.76 E-value=6.3 Score=39.71 Aligned_cols=78 Identities=12% Similarity=0.105 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHH
Q 039282 94 TLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT-PDQQAWLSYIKFEL 171 (476)
Q Consensus 94 ~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~-P~~~~w~~~~~~~~ 171 (476)
...+.+|++..-...+..|+..|.+|....|.+...++.++.+....|+.-.|.-.|-|++... |-..++.++..+..
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 4566788888778888888888888888888888888888888888888888888888877543 55566666665544
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.00 E-value=25 Score=34.67 Aligned_cols=95 Identities=11% Similarity=0.076 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHhCCHHHHHHHHHHHH----hcCCCH----
Q 039282 95 LWCKYAEFEMINKFINHARNVWDRAVAVLPH------VDQLWYKYIRMEEIAGNVAAARLIFDRWM----HWTPDQ---- 160 (476)
Q Consensus 95 lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~------~~~lw~~~~~~~~~~g~~~~A~~~~eral----~~~P~~---- 160 (476)
+...++.++...|++..|..++.....-.-. -..++..-..++...+|+..|..++.++. ...+.+
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 4445666666666666666666665432111 13455555666666666666666666542 222222
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 039282 161 QAWLSYIKFELRYEQVELARQVFERLVQC 189 (476)
Q Consensus 161 ~~w~~~~~~~~~~g~~~~A~~~~~r~l~~ 189 (476)
......+.++...+++..|-..|..+...
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 23444555556666676666666666543
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.86 E-value=3.5 Score=40.79 Aligned_cols=99 Identities=10% Similarity=0.114 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC--CCHHHH---
Q 039282 127 DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ----QAWLSYIKFELRYEQVELARQVFERLVQCHP--NVVSSW--- 197 (476)
Q Consensus 127 ~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~----~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p--~~~~~w--- 197 (476)
..++..++.++...|+++.|..+|.++...+... +++...+.++...+++..+...+.++..... .++...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3467788888889999999999999887765542 7788888888889999999999888865432 123222
Q ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 198 -IKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 198 -~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
...|.++...+++..|...|-.++.. +.
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t-~~ 239 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT-FT 239 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH-SC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc-CC
Confidence 23344556778999999999888877 54
No 260
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.06 E-value=35 Score=34.33 Aligned_cols=104 Identities=13% Similarity=0.084 Sum_probs=60.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHH----------HHHHHHHHHHh-----cCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 55 VPGDTAVWINYAKWEGSQNEFDR----------ARSMWELALEE-----DCR-NHTLWCKYAEFEMINKFINHARNVWDR 118 (476)
Q Consensus 55 ~p~~~~~w~~~a~~~~~~~~~~~----------A~~~~eral~~-----~p~-~~~lw~~y~~~e~~~~~~~~A~~~~~r 118 (476)
++.+..+|.-|...+...|.... .|..+-.++.. |+. -..+|..+...++..+.++.|..+..+
T Consensus 177 D~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 177 NLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp --------------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhc
Confidence 45567789888888877776543 35455444432 222 268899999999999999999999999
Q ss_pred HHHhCCCc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Q 039282 119 AVAVLPHV-------DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ 160 (476)
Q Consensus 119 al~~~p~~-------~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~ 160 (476)
+. .|.+ ....+-+|.+....+++..|...|..|+..+|..
T Consensus 257 ~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 257 LE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred Cc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 95 4532 2344455778888899999999999999988853
No 261
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=78.71 E-value=16 Score=36.66 Aligned_cols=81 Identities=6% Similarity=-0.016 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 039282 127 DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQ-QAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEM 205 (476)
Q Consensus 127 ~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~-~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~ 205 (476)
......+|.+......+..|+..|.+|+...|+. ..++.++.+....|+.-.|.-.|-|++......+.++.++..+..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 3456677888888888999999999999999997 788999999888899989999999999876556888888887776
Q ss_pred Hc
Q 039282 206 RR 207 (476)
Q Consensus 206 ~~ 207 (476)
..
T Consensus 232 ~~ 233 (497)
T 1ya0_A 232 KA 233 (497)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 262
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.23 E-value=4.1 Score=41.09 Aligned_cols=122 Identities=13% Similarity=0.126 Sum_probs=58.5
Q ss_pred HHHHcCCHHHHHHHHHHHH------H-----hCCCcHHHHHHHHHHHHHhCCHHH----------HHHHHHHHHh-----
Q 039282 102 FEMINKFINHARNVWDRAV------A-----VLPHVDQLWYKYIRMEEIAGNVAA----------ARLIFDRWMH----- 155 (476)
Q Consensus 102 ~e~~~~~~~~A~~~~~ral------~-----~~p~~~~lw~~~~~~~~~~g~~~~----------A~~~~eral~----- 155 (476)
.+..++.+++|..+-...+ . +++-..++|+-|..+++..|+... .|..+-.+++
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 4566778887776655443 1 123357889999998888886654 3544444433
Q ss_pred cCCCH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 156 WTPDQ--QAWLSYIKFELRYEQVELARQVFERLVQCHPNV-------VSSWIKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 156 ~~P~~--~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~-------~~~w~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.++.. .+|..++..+...+.++.|..+..+.. +|.+ ....+.+|.+..-++++.+|...+..|+.. +|
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap 301 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-AP 301 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CS
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CC
Confidence 33443 678999999999999999999999974 5642 233444578888899999999999999998 87
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=74.03 E-value=86 Score=32.38 Aligned_cols=119 Identities=8% Similarity=-0.054 Sum_probs=78.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHH---HhCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHH
Q 039282 105 INKFINHARNVWDRAVAVLPHVDQ-LWYKYIRMEE---IAGNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELAR 180 (476)
Q Consensus 105 ~~~~~~~A~~~~~ral~~~p~~~~-lw~~~~~~~~---~~g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~ 180 (476)
..++.+.|..+|.+.....+-++. .|.....+.. ..+....+...+.+.....++.....-++....+.|++..|.
T Consensus 226 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 226 ARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHHH
Confidence 345778888888877654433333 3333322222 223256677777777766666655555556677889999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 181 QVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 181 ~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
..|.++-...+......+-.+..+...|+.++|..+|+.+...
T Consensus 306 ~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~ 348 (618)
T 1qsa_A 306 TWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ 348 (618)
T ss_dssp HHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC
Confidence 9998865533333444455577888999999999999998753
No 264
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.95 E-value=49 Score=37.04 Aligned_cols=52 Identities=12% Similarity=-0.148 Sum_probs=25.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHH
Q 039282 166 YIKFELRYEQVELARQVFERLVQCHPNVV-----SSWIKYAKFEMRRGEIDRARNVY 217 (476)
Q Consensus 166 ~~~~~~~~g~~~~A~~~~~r~l~~~p~~~-----~~w~~~a~~~~~~g~~~~A~~~~ 217 (476)
.+.+..+.|-++.+...-..++...+.+. ..|..+.+.....|+++.|-...
T Consensus 905 v~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 905 LSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 33444455555555555555555433211 14555555555555555553333
No 265
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=57.02 E-value=90 Score=26.44 Aligned_cols=60 Identities=7% Similarity=0.042 Sum_probs=43.2
Q ss_pred HHHHHhCCCHHHHHHHHHHHH--Hhc---------------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 039282 66 AKWEGSQNEFDRARSMWELAL--EED---------------CRNH-TLWCKYAEFEMINKFINHARNVWDRAVAVLPH 125 (476)
Q Consensus 66 a~~~~~~~~~~~A~~~~eral--~~~---------------p~~~-~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~ 125 (476)
+.++-...|+..|...++..| +++ |.+. -+...++.++...|+.++|...|.+.....|-
T Consensus 69 ~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 69 SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccc
Confidence 345556788999999999988 332 3333 34566777778888888888888888877765
No 266
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=55.63 E-value=30 Score=24.62 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHH
Q 039282 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLWC 97 (476)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~ 97 (476)
+.+|..+...|+++.|...|-+|+.++|.-..+..
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL~ 55 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLLQ 55 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 35677777788888888888888888887665543
No 267
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=49.94 E-value=1.9e+02 Score=28.19 Aligned_cols=166 Identities=10% Similarity=0.067 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHHhCCC------
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFE----MINKFINHARNVWDRAVAVLPH------ 125 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e----~~~~~~~~A~~~~~ral~~~p~------ 125 (476)
+....+...++.++...|+++.....+.-...........-...+... ....+.+. ......+...-.
T Consensus 53 ~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~ki 130 (445)
T 4b4t_P 53 ASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKI 130 (445)
T ss_dssp TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCC
T ss_pred hhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccch
Confidence 445677778888888889998877766544333332222222222211 12222221 111222222111
Q ss_pred -----cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC----CCH---HHHHHHHHHHHHhhhHHHHHHHHHHHHH---hC
Q 039282 126 -----VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT----PDQ---QAWLSYIKFELRYEQVELARQVFERLVQ---CH 190 (476)
Q Consensus 126 -----~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~----P~~---~~w~~~~~~~~~~g~~~~A~~~~~r~l~---~~ 190 (476)
...+...++.+++..|++.+|..++.....-. +.. .++..-+.++...+++.+|..++.++.. ..
T Consensus 131 flE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~ 210 (445)
T 4b4t_P 131 FVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKN 210 (445)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhccc
Confidence 24677889999999999999999998875322 111 5677788889999999999999998742 22
Q ss_pred CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 039282 191 PNVV----SSWIKYAKFEMRRGEIDRARNVYERALEK 223 (476)
Q Consensus 191 p~~~----~~w~~~a~~~~~~g~~~~A~~~~e~al~~ 223 (476)
+..+ ......|.++...+++.+|-..|..+...
T Consensus 211 ~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 211 PKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3323 34556688888899999999999998876
No 268
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=47.67 E-value=1.1e+02 Score=24.87 Aligned_cols=80 Identities=10% Similarity=-0.038 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 141 GNVAAARLIFDRWMHWTPDQQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220 (476)
Q Consensus 141 g~~~~A~~~~eral~~~P~~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~a 220 (476)
||.......|-+. ...+.....-+......|.-++--.++...+...|-++++.+.++..|.+.|+..+|.++..+|
T Consensus 75 ~NlKrVi~C~~~~---n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 75 QNLKSVVECGVIN---NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp SCTHHHHHHHHHT---TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHHh---cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 5666666665443 2233344444556677888888888888876666656999999999999999999999999999
Q ss_pred HHh
Q 039282 221 LEK 223 (476)
Q Consensus 221 l~~ 223 (476)
.+.
T Consensus 152 C~k 154 (172)
T 1wy6_A 152 CKK 154 (172)
T ss_dssp HHT
T ss_pred HHh
Confidence 987
No 269
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=40.51 E-value=22 Score=20.75 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCHhhHHHHHhhCC
Q 039282 397 LEEWLNMERSFGELGDVNLVQAMLP 421 (476)
Q Consensus 397 ~~~~~~fE~~~G~~~~~~~v~~~~p 421 (476)
...|+++....|..+.++.|++++.
T Consensus 5 SaQW~eYYrsiG~~~eAeaIe~q~k 29 (33)
T 2bn5_A 5 SAQWAEYYRSVGKIEEAEAIEKTLK 29 (33)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4579999999999999999988764
No 270
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=37.14 E-value=40 Score=25.33 Aligned_cols=34 Identities=12% Similarity=0.095 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHH
Q 039282 63 INYAKWEGSQNEFDRARSMWELALEEDCRNHTLW 96 (476)
Q Consensus 63 ~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw 96 (476)
+.+|..++..|+++.|...|-+|+.++|.-..+.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 3566777778888888888888888888754443
No 271
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.82 E-value=1.7e+02 Score=24.19 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=28.2
Q ss_pred HhCCCHHHHHHHHHHHHHhcCCC---HHHHHHHHH------HHHHcCCHHHHHHHHHHHHHh
Q 039282 70 GSQNEFDRARSMWELALEEDCRN---HTLWCKYAE------FEMINKFINHARNVWDRAVAV 122 (476)
Q Consensus 70 ~~~~~~~~A~~~~eral~~~p~~---~~lw~~y~~------~e~~~~~~~~A~~~~~ral~~ 122 (476)
...|++=.|-.++|.+-...+.. -.+|.-+++ .....||..-|+.++.+++..
T Consensus 43 Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 43 YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33466666666666666543332 344544444 223456666666666666553
No 272
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=35.31 E-value=1.9e+02 Score=23.92 Aligned_cols=51 Identities=4% Similarity=-0.004 Sum_probs=30.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHH-H-----HHHhCCHHHHHHHHHHHHh
Q 039282 105 INKFINHARNVWDRAVAVLPHV---DQLWYKYIR-M-----EEIAGNVAAARLIFDRWMH 155 (476)
Q Consensus 105 ~~~~~~~A~~~~~ral~~~p~~---~~lw~~~~~-~-----~~~~g~~~~A~~~~eral~ 155 (476)
..|.+=+|-.+++.+-...+.. ..+|..+++ + ....||...|+.++.+++.
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3377777777777766655432 345555555 2 3445666666666666654
No 273
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=34.63 E-value=1e+02 Score=21.79 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=22.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 039282 97 CKYAEFEMINKFINHARNVWDRAVAVLPHVDQLW 130 (476)
Q Consensus 97 ~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw 130 (476)
...|+.+...|+++.|..-|-+|+..+|.-..+.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~LL 54 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQLL 54 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 3456666677777777777777777777654443
No 274
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=34.29 E-value=1.9e+02 Score=23.58 Aligned_cols=114 Identities=5% Similarity=-0.082 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHH-----------HHH---------hCCCHHHHHHHHHHHHHhcCCCHHHHHHH
Q 039282 40 YRLHKRNDFEDSIRRVPGDTAVWINYAK-----------WEG---------SQNEFDRARSMWELALEEDCRNHTLWCKY 99 (476)
Q Consensus 40 ~~~~a~~~~e~~l~~~p~~~~~w~~~a~-----------~~~---------~~~~~~~A~~~~eral~~~p~~~~lw~~y 99 (476)
|..+-.++.++.+..+|-+...|.---- .+. ..|+..+..++|-+. +. +...--..
T Consensus 22 ~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~---n~-~se~vd~A 97 (172)
T 1wy6_A 22 YIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVIN---NT-LNEHVNKA 97 (172)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHT---TC-CCHHHHHH
T ss_pred hHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHh---cc-hHHHHHHH
Confidence 3456778888888888877777762111 111 145566666666542 22 22222333
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Q 039282 100 AEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT 157 (476)
Q Consensus 100 ~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~ 157 (476)
.+.....|.-++-..++...+...|-++.+...++..+...|+..+|-.++.+|.+..
T Consensus 98 Ld~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 98 LDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4455677888877778877666666678999999999999999999999888887654
No 275
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=29.63 E-value=53 Score=23.88 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=14.6
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 039282 205 MRRGEIDRARNVYERALEK 223 (476)
Q Consensus 205 ~~~g~~~~A~~~~e~al~~ 223 (476)
...|++++|..+|..|++.
T Consensus 30 D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4568888888888888776
No 276
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=29.36 E-value=6.7e+02 Score=28.42 Aligned_cols=82 Identities=10% Similarity=0.132 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 039282 143 VAAARLIFDRWMHWTPD--QQAWLSYIKFELRYEQVELARQVFERLVQCHPNVVSSWIKYAKFEMRRGEIDRARNVYERA 220 (476)
Q Consensus 143 ~~~A~~~~eral~~~P~--~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~p~~~~~w~~~a~~~~~~g~~~~A~~~~e~a 220 (476)
.+...+.|...++|-.- ......-+.-..+++.+.+|.+++.++++..|. -+.+...+.+....| ++......++.
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k~~-~~~~~~~~~~~~~l~-w~h~~~~~~~~ 1342 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEKRT-RDHFVELAAINGALG-HEHIRTVINRM 1342 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHcC-CHHHHHHHHhh
Confidence 44556677777777542 222222222334688999999999999998887 788999998888775 45555666655
Q ss_pred HHhhcC
Q 039282 221 LEKKLA 226 (476)
Q Consensus 221 l~~~~p 226 (476)
+-..+|
T Consensus 1343 ~~~~~p 1348 (1354)
T 3lxu_X 1343 MITAFP 1348 (1354)
T ss_dssp HHHHSC
T ss_pred hhhhCc
Confidence 443355
No 277
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=27.74 E-value=60 Score=23.56 Aligned_cols=19 Identities=26% Similarity=0.555 Sum_probs=14.7
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 039282 205 MRRGEIDRARNVYERALEK 223 (476)
Q Consensus 205 ~~~g~~~~A~~~~e~al~~ 223 (476)
.+.|++++|..+|..||+.
T Consensus 22 D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 4568888888888888776
No 278
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=27.53 E-value=2.8e+02 Score=23.45 Aligned_cols=165 Identities=11% Similarity=-0.021 Sum_probs=100.7
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CC-------
Q 039282 56 PGDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAV----LP------- 124 (476)
Q Consensus 56 p~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~----~p------- 124 (476)
|.+.+.-+.+.-.+.-+|.+.++.-++.. ..+....+.. .-++.+.+++..|...++..++- +|
T Consensus 30 ~~~~eY~lL~~I~LyyngEY~R~Lf~L~~----lNT~Ts~YYk-~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 30 PCKPEYRMLMSIVLYLNGEYTRALFHLHK----LNTCTSKYYE-SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQ 104 (242)
T ss_dssp ----CTHHHHHHHHHHTTCHHHHHHHHHT----CCBHHHHHHH-HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHH
T ss_pred cCChHHHhhhhhhhhhcchHhHHHHHHHh----cchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccc
Confidence 33444555556666668888877655433 1222333333 33567889999999999999932 23
Q ss_pred ------Cc-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCHHHHHHHH------------HHHHHh------hhHHHH
Q 039282 125 ------HV-DQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPDQQAWLSYI------------KFELRY------EQVELA 179 (476)
Q Consensus 125 ------~~-~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~~~~w~~~~------------~~~~~~------g~~~~A 179 (476)
.+ .-+...++.++.+.|+.++|+..|.+.....|--..-..++ +...+. ..+...
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~~~~i~~~y~~d~ 184 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTGRRGIEEEYVSDS 184 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-----------CHHHHHHHHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhhhccchhhhhhhH
Confidence 22 34567889999999999999999999888776522111111 000000 001111
Q ss_pred H--------HHHHHHHHhCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 180 R--------QVFERLVQCHPNVVSSW-IKYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 180 ~--------~~~~r~l~~~p~~~~~w-~~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
. ...+++....|.-+..+ ..++..+...|-.++.+.+|...-+. .|
T Consensus 185 ~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~k-DP 239 (242)
T 3kae_A 185 IEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRK-DP 239 (242)
T ss_dssp HHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-ST
T ss_pred HHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhc-CC
Confidence 1 34455555667744433 35577888999999999999987776 55
No 279
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=27.07 E-value=5.2e+02 Score=26.41 Aligned_cols=72 Identities=7% Similarity=-0.026 Sum_probs=43.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 039282 46 NDFEDSIRRVPGDTAVWINYAKWE---GSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVA 121 (476)
Q Consensus 46 ~~~e~~l~~~p~~~~~w~~~a~~~---~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~ 121 (476)
..+...|..+|+.+.....-..++ ...++...-...|.. .|.+...-+.|.......|+...|......+-.
T Consensus 56 ~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~ 130 (618)
T 1qsa_A 56 VTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWL 130 (618)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Confidence 356666777777765544333333 235566655554443 267777777777777777776666555555443
No 280
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=24.20 E-value=3.9e+02 Score=29.02 Aligned_cols=104 Identities=7% Similarity=-0.170 Sum_probs=70.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------------
Q 039282 65 YAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLP-------------------- 124 (476)
Q Consensus 65 ~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p-------------------- 124 (476)
++..+...|..+-|+. .+...|.++-.-+-.|.+++..|.+++|..+|++|-.-..
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 4555566677765544 4456677776666677788888888888888887653210
Q ss_pred -C--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-H-----HHHHHHHHHHHH
Q 039282 125 -H--VDQLWYKYIRMEEIAGNVAAARLIFDRWMHWTPD-Q-----QAWLSYIKFELR 172 (476)
Q Consensus 125 -~--~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~P~-~-----~~w~~~~~~~~~ 172 (476)
. ....+...+.+.+..+-++-+...-..||+.... + .+|....+....
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a 948 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACA 948 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhh
Confidence 0 1236778888889999999999999999975432 1 567666555443
No 281
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=21.89 E-value=1.6e+02 Score=21.95 Aligned_cols=27 Identities=7% Similarity=0.194 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhhcC
Q 039282 199 KYAKFEMRRGEIDRARNVYERALEKKLA 226 (476)
Q Consensus 199 ~~a~~~~~~g~~~~A~~~~e~al~~~~p 226 (476)
.+|..+...|+++.|...|-+|+.. +|
T Consensus 25 ~lGE~L~~~g~~e~av~Hf~nAl~V-c~ 51 (95)
T 1om2_A 25 QLGEELLAQGDYEKGVDHLTNAIAV-CG 51 (95)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH-HS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH-cC
Confidence 4566667788899999988888888 88
No 282
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=20.67 E-value=5e+02 Score=23.91 Aligned_cols=28 Identities=4% Similarity=-0.187 Sum_probs=24.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 039282 192 NVVSSWIKYAKFEMRRGEIDRARNVYER 219 (476)
Q Consensus 192 ~~~~~w~~~a~~~~~~g~~~~A~~~~e~ 219 (476)
.++.++..+|..+.+.|++.+|+..|-.
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4689999999999999999999988864
No 283
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.57 E-value=7.3e+02 Score=26.80 Aligned_cols=106 Identities=11% Similarity=-0.122 Sum_probs=76.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--C------------------
Q 039282 99 YAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRMEEIAGNVAAARLIFDRWMHWT--P------------------ 158 (476)
Q Consensus 99 y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~~~~~g~~~~A~~~~eral~~~--P------------------ 158 (476)
+...+...|.++-|+. .+..+|.++-.-+..|.++...|++++|..+|+++-.-- +
T Consensus 816 l~~~L~~~~~~~~a~e----L~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHHH----HGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHHH----HHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 4555677888876654 556778877777888999999999999999999864211 0
Q ss_pred -C---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCH----HHHHHHHHHHHHcC
Q 039282 159 -D---QQAWLSYIKFELRYEQVELARQVFERLVQCH-PNVV----SSWIKYAKFEMRRG 208 (476)
Q Consensus 159 -~---~~~w~~~~~~~~~~g~~~~A~~~~~r~l~~~-p~~~----~~w~~~a~~~~~~g 208 (476)
. ...+..-+.+..+.+-++-+...-+.++..- +++. ++|.++.+.....|
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 0 0245666778888999999999999999754 3434 46777766655544
No 284
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=20.44 E-value=98 Score=22.35 Aligned_cols=19 Identities=16% Similarity=0.193 Sum_probs=14.5
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 039282 205 MRRGEIDRARNVYERALEK 223 (476)
Q Consensus 205 ~~~g~~~~A~~~~e~al~~ 223 (476)
...|++++|..+|..|++.
T Consensus 24 D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 24 DTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 4557888888888888775
No 285
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=20.15 E-value=6.8 Score=39.31 Aligned_cols=145 Identities=10% Similarity=0.107 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 039282 57 GDTAVWINYAKWEGSQNEFDRARSMWELALEEDCRNHTLWCKYAEFEMINKFINHARNVWDRAVAVLPHVDQLWYKYIRM 136 (476)
Q Consensus 57 ~~~~~w~~~a~~~~~~~~~~~A~~~~eral~~~p~~~~lw~~y~~~e~~~~~~~~A~~~~~ral~~~p~~~~lw~~~~~~ 136 (476)
+++..|......++..+++.-|.-+-=..+ ++|+..+ .++..+...|.+++-..+++.++.+.--+..+...++-+
T Consensus 197 ns~ktWKeV~~ACvd~~EfrLAqicGLniI-vhadeL~---elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaIL 272 (624)
T 3lvg_A 197 NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELE---ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 272 (624)
T ss_dssp CSSCSHHHHTHHHHHSCTTTTTTHHHHHHH-CCSSCCS---GGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHH
T ss_pred CChhHHHHHHHHHhCchHHHHHHHhcchhc-ccHHHHH---HHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 445566666666666665555443322222 3333221 233344556778888889999988766678888888777
Q ss_pred HHHhCCHHHHHHHHH---------HHHhcCCCHHHHHHHHHHHHHhhhHHHHHH-------------HHHHHHHhCCCCH
Q 039282 137 EEIAGNVAAARLIFD---------RWMHWTPDQQAWLSYIKFELRYEQVELARQ-------------VFERLVQCHPNVV 194 (476)
Q Consensus 137 ~~~~g~~~~A~~~~e---------ral~~~P~~~~w~~~~~~~~~~g~~~~A~~-------------~~~r~l~~~p~~~ 194 (476)
+.... .+.-.+.++ +.++.+-...+|..++-++..+.+++.|.. .|...+...++ .
T Consensus 273 YsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN-~ 350 (624)
T 3lvg_A 273 YSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVAN-V 350 (624)
T ss_dssp HHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSC-S
T ss_pred HHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcch-H
Confidence 76542 222222221 111112223679999999999999998853 23344444444 7
Q ss_pred HHHHHHHHHHHHc
Q 039282 195 SSWIKYAKFEMRR 207 (476)
Q Consensus 195 ~~w~~~a~~~~~~ 207 (476)
+++++-+.||...
T Consensus 351 EiyYKAi~FYL~e 363 (624)
T 3lvg_A 351 ELYYRAIQFYLEF 363 (624)
T ss_dssp HHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888654
No 286
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=20.09 E-value=1e+02 Score=22.89 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=13.8
Q ss_pred HHcCCHHHHHHHHHHHHHh
Q 039282 205 MRRGEIDRARNVYERALEK 223 (476)
Q Consensus 205 ~~~g~~~~A~~~~e~al~~ 223 (476)
...|++++|...|..|++.
T Consensus 26 D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 26 DAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 4557778888777777776
Done!