Query 039283
Match_columns 600
No_of_seqs 432 out of 2918
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 08:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 3.4E-70 7.3E-75 609.6 42.8 522 26-578 19-556 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 1E-44 2.2E-49 366.2 16.5 278 189-473 1-284 (287)
3 PLN03210 Resistant to P. syrin 100.0 1.9E-38 4.1E-43 373.1 32.2 405 136-577 134-568 (1153)
4 PRK04841 transcriptional regul 99.7 4E-15 8.6E-20 174.2 25.5 294 183-521 13-332 (903)
5 PRK00411 cdc6 cell division co 99.5 3.6E-12 7.8E-17 134.6 27.5 304 181-500 27-358 (394)
6 COG2909 MalT ATP-dependent tra 99.5 1.1E-12 2.3E-17 141.2 21.7 299 182-523 17-340 (894)
7 TIGR02928 orc1/cdc6 family rep 99.5 5.6E-11 1.2E-15 124.2 29.5 303 183-501 14-351 (365)
8 TIGR03015 pepcterm_ATPase puta 99.3 1.2E-10 2.6E-15 116.2 21.3 182 211-398 43-242 (269)
9 PF01637 Arch_ATPase: Archaeal 99.3 1.3E-11 2.9E-16 120.2 10.9 196 186-394 1-234 (234)
10 COG3899 Predicted ATPase [Gene 99.3 1.4E-10 3.1E-15 131.7 18.6 313 185-520 1-385 (849)
11 PRK00080 ruvB Holliday junctio 99.2 2E-10 4.4E-15 117.8 15.0 278 184-501 25-311 (328)
12 TIGR00635 ruvB Holliday juncti 99.2 7.1E-10 1.5E-14 112.8 18.4 277 185-501 5-290 (305)
13 PF05729 NACHT: NACHT domain 99.1 4.8E-10 1E-14 103.0 11.3 143 212-361 1-163 (166)
14 PTZ00112 origin recognition co 99.1 3.1E-08 6.7E-13 108.2 23.8 303 183-501 754-1087(1164)
15 COG2256 MGS1 ATPase related to 99.0 1.6E-08 3.5E-13 100.9 15.2 221 183-439 29-266 (436)
16 PRK13342 recombination factor 98.9 1.5E-07 3.1E-12 99.7 20.8 178 185-397 13-199 (413)
17 PRK07003 DNA polymerase III su 98.8 1.9E-07 4.2E-12 101.6 19.3 198 184-398 16-225 (830)
18 PRK06893 DNA replication initi 98.8 7.3E-08 1.6E-12 93.4 14.0 156 211-398 39-207 (229)
19 PF13401 AAA_22: AAA domain; P 98.8 1.6E-08 3.4E-13 89.0 7.7 118 210-330 3-125 (131)
20 PF13191 AAA_16: AAA ATPase do 98.8 2E-08 4.4E-13 94.0 8.6 51 185-238 1-51 (185)
21 PTZ00202 tuzin; Provisional 98.8 7E-07 1.5E-11 91.0 19.9 169 180-360 258-433 (550)
22 PRK14961 DNA polymerase III su 98.8 3.2E-07 6.9E-12 95.3 18.1 193 184-392 16-218 (363)
23 PRK12402 replication factor C 98.7 2.3E-07 4.9E-12 95.9 16.0 201 184-395 15-227 (337)
24 PRK05564 DNA polymerase III su 98.7 3.1E-07 6.7E-12 93.6 16.6 178 185-393 5-189 (313)
25 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.7E-07 5.8E-12 89.5 15.2 172 189-398 22-205 (226)
26 PRK14949 DNA polymerase III su 98.7 2.3E-07 5E-12 103.0 16.2 194 184-393 16-219 (944)
27 PRK14960 DNA polymerase III su 98.7 2.6E-07 5.5E-12 99.6 15.9 192 184-392 15-217 (702)
28 PRK12323 DNA polymerase III su 98.7 3.1E-07 6.7E-12 98.8 16.3 198 184-393 16-224 (700)
29 PRK14963 DNA polymerase III su 98.7 7.6E-08 1.7E-12 103.2 11.6 204 185-398 15-222 (504)
30 PRK04195 replication factor C 98.7 2.2E-06 4.7E-11 92.6 21.9 247 184-473 14-271 (482)
31 COG1474 CDC6 Cdc6-related prot 98.7 1.5E-06 3.3E-11 89.4 19.6 208 185-395 18-239 (366)
32 COG3903 Predicted ATPase [Gene 98.7 4E-08 8.7E-13 98.8 7.5 292 210-522 13-315 (414)
33 PRK07471 DNA polymerase III su 98.7 9.9E-07 2.2E-11 90.9 17.7 197 183-394 18-238 (365)
34 PRK09112 DNA polymerase III su 98.6 1.3E-06 2.8E-11 89.6 17.1 199 182-395 21-241 (351)
35 PF13173 AAA_14: AAA domain 98.6 8.9E-08 1.9E-12 83.9 7.4 119 212-353 3-127 (128)
36 PRK07940 DNA polymerase III su 98.6 1.1E-06 2.3E-11 91.5 16.5 193 185-394 6-213 (394)
37 PLN03025 replication factor C 98.6 9E-07 2E-11 90.4 15.3 184 185-394 14-200 (319)
38 PRK14951 DNA polymerase III su 98.6 1.2E-06 2.7E-11 95.5 17.0 195 184-394 16-225 (618)
39 PRK00440 rfc replication facto 98.6 1.7E-06 3.8E-11 88.6 17.4 182 184-393 17-202 (319)
40 PRK14957 DNA polymerase III su 98.6 1.5E-06 3.2E-11 93.6 17.3 187 184-398 16-225 (546)
41 PRK14956 DNA polymerase III su 98.6 1.7E-07 3.7E-12 98.2 9.9 196 184-391 18-219 (484)
42 cd00009 AAA The AAA+ (ATPases 98.6 3.6E-07 7.8E-12 81.6 10.8 124 187-331 1-130 (151)
43 PRK07994 DNA polymerase III su 98.6 9.3E-07 2E-11 96.6 15.7 194 184-393 16-219 (647)
44 PF05496 RuvB_N: Holliday junc 98.6 6.8E-07 1.5E-11 83.7 12.3 183 184-400 24-227 (233)
45 PRK06645 DNA polymerase III su 98.6 2.3E-06 4.9E-11 91.6 18.0 191 185-391 22-226 (507)
46 PRK08691 DNA polymerase III su 98.6 9.7E-07 2.1E-11 96.1 15.1 194 184-394 16-220 (709)
47 TIGR02397 dnaX_nterm DNA polym 98.6 3E-06 6.5E-11 88.2 18.4 183 184-395 14-219 (355)
48 PRK14962 DNA polymerase III su 98.6 1.7E-06 3.8E-11 92.1 16.3 187 184-398 14-223 (472)
49 TIGR00678 holB DNA polymerase 98.5 3.4E-06 7.3E-11 79.3 16.2 91 290-390 95-187 (188)
50 KOG2028 ATPase related to the 98.5 3.8E-06 8.3E-11 82.7 16.7 158 209-389 160-331 (554)
51 PRK14958 DNA polymerase III su 98.5 1.6E-06 3.5E-11 93.3 15.7 187 184-398 16-225 (509)
52 PRK14964 DNA polymerase III su 98.5 3.1E-06 6.7E-11 89.9 17.3 181 184-391 13-214 (491)
53 PRK13341 recombination factor 98.5 1.6E-06 3.6E-11 96.6 15.8 171 184-391 28-214 (725)
54 TIGR02903 spore_lon_C ATP-depe 98.5 2.9E-06 6.2E-11 93.8 17.2 202 185-397 155-398 (615)
55 PRK05896 DNA polymerase III su 98.5 3.3E-06 7.1E-11 91.1 16.3 198 184-397 16-224 (605)
56 PRK08903 DnaA regulatory inact 98.5 2.8E-06 6.1E-11 82.4 14.4 153 210-398 41-203 (227)
57 PRK14969 DNA polymerase III su 98.5 3.3E-06 7.1E-11 91.6 15.9 183 184-397 16-224 (527)
58 cd01128 rho_factor Transcripti 98.4 3.1E-07 6.7E-12 89.4 6.7 91 210-301 15-113 (249)
59 PRK09111 DNA polymerase III su 98.4 5.4E-06 1.2E-10 90.7 16.5 199 184-395 24-234 (598)
60 PRK08727 hypothetical protein; 98.4 6.9E-06 1.5E-10 79.8 15.5 150 212-393 42-203 (233)
61 PRK14955 DNA polymerase III su 98.4 4.2E-06 9.1E-11 88.0 14.5 200 184-393 16-227 (397)
62 PF05621 TniB: Bacterial TniB 98.4 8.4E-06 1.8E-10 80.0 15.5 199 191-394 44-261 (302)
63 PF14516 AAA_35: AAA-like doma 98.4 9.4E-05 2E-09 75.8 24.0 202 183-401 10-246 (331)
64 PRK14959 DNA polymerase III su 98.4 9.3E-06 2E-10 88.1 16.7 199 185-399 17-226 (624)
65 PRK09087 hypothetical protein; 98.4 8.6E-06 1.9E-10 78.5 14.7 144 211-397 44-198 (226)
66 PRK07764 DNA polymerase III su 98.4 9.8E-06 2.1E-10 91.7 17.3 198 185-398 16-226 (824)
67 PRK08084 DNA replication initi 98.4 1.3E-05 2.9E-10 77.9 15.5 156 211-398 45-213 (235)
68 PRK14950 DNA polymerase III su 98.3 1.5E-05 3.3E-10 87.9 17.7 197 184-395 16-222 (585)
69 PRK14952 DNA polymerase III su 98.3 1.8E-05 3.8E-10 86.2 17.6 200 184-399 13-225 (584)
70 PRK05642 DNA replication initi 98.3 1.5E-05 3.3E-10 77.4 14.9 156 211-398 45-212 (234)
71 PRK14970 DNA polymerase III su 98.3 2.1E-05 4.6E-10 82.1 17.1 185 185-396 18-212 (367)
72 PRK14953 DNA polymerase III su 98.3 4E-05 8.7E-10 82.2 18.7 183 185-395 17-221 (486)
73 PRK07133 DNA polymerase III su 98.3 3.1E-05 6.6E-10 85.5 17.9 195 184-395 18-221 (725)
74 TIGR03345 VI_ClpV1 type VI sec 98.3 1.2E-05 2.5E-10 92.1 15.0 183 184-387 187-389 (852)
75 PF00308 Bac_DnaA: Bacterial d 98.3 2.3E-05 5E-10 75.3 14.8 166 210-396 33-210 (219)
76 PRK14087 dnaA chromosomal repl 98.3 3.6E-05 7.8E-10 82.0 17.5 170 211-397 141-322 (450)
77 PHA02544 44 clamp loader, smal 98.3 3.3E-05 7.2E-10 79.0 16.7 148 184-359 21-171 (316)
78 TIGR01242 26Sp45 26S proteasom 98.3 2.5E-06 5.4E-11 88.9 8.4 181 182-388 120-328 (364)
79 PRK09376 rho transcription ter 98.2 3.6E-06 7.7E-11 85.6 9.0 101 195-301 158-266 (416)
80 KOG2227 Pre-initiation complex 98.2 5E-05 1.1E-09 77.6 17.1 213 182-397 148-375 (529)
81 PRK14954 DNA polymerase III su 98.2 3.8E-05 8.2E-10 84.3 17.5 203 184-395 16-230 (620)
82 TIGR02639 ClpA ATP-dependent C 98.2 1.1E-05 2.3E-10 91.7 13.5 156 184-361 182-358 (731)
83 PRK08451 DNA polymerase III su 98.2 3.9E-05 8.6E-10 82.3 16.9 194 184-394 14-218 (535)
84 CHL00181 cbbX CbbX; Provisiona 98.2 9.7E-05 2.1E-09 73.9 18.5 136 211-363 59-211 (287)
85 PRK06305 DNA polymerase III su 98.2 3.8E-05 8.3E-10 81.8 16.4 187 184-396 17-225 (451)
86 TIGR02881 spore_V_K stage V sp 98.2 3E-05 6.6E-10 76.8 14.6 161 185-362 7-192 (261)
87 PRK14971 DNA polymerase III su 98.2 5.6E-05 1.2E-09 83.4 17.7 176 184-391 17-219 (614)
88 PRK05707 DNA polymerase III su 98.2 4.1E-05 8.9E-10 77.9 15.4 97 290-394 105-203 (328)
89 PRK14948 DNA polymerase III su 98.2 6E-05 1.3E-09 83.1 17.7 197 184-394 16-222 (620)
90 PRK06647 DNA polymerase III su 98.2 7.8E-05 1.7E-09 81.3 18.0 193 184-392 16-218 (563)
91 PRK14965 DNA polymerase III su 98.2 5.2E-05 1.1E-09 83.3 16.4 199 184-398 16-225 (576)
92 CHL00095 clpC Clp protease ATP 98.1 1.3E-05 2.8E-10 92.2 12.0 156 184-359 179-352 (821)
93 COG2255 RuvB Holliday junction 98.1 0.00011 2.4E-09 70.5 16.1 181 184-398 26-227 (332)
94 TIGR02880 cbbX_cfxQ probable R 98.1 9.7E-05 2.1E-09 73.9 16.6 134 212-362 59-209 (284)
95 KOG2543 Origin recognition com 98.1 3.9E-05 8.5E-10 76.5 13.1 206 183-397 5-229 (438)
96 KOG0989 Replication factor C, 98.1 1.4E-05 3E-10 77.4 9.8 184 184-389 36-225 (346)
97 PF05673 DUF815: Protein of un 98.1 0.00015 3.3E-09 69.1 16.5 125 179-331 22-151 (249)
98 PRK05563 DNA polymerase III su 98.1 0.00012 2.6E-09 80.1 17.9 192 184-391 16-217 (559)
99 TIGR00767 rho transcription te 98.1 7.7E-06 1.7E-10 83.6 7.7 92 210-302 167-266 (415)
100 PRK07399 DNA polymerase III su 98.1 0.00012 2.6E-09 74.1 15.8 197 185-395 5-222 (314)
101 PRK03992 proteasome-activating 98.0 1.5E-05 3.2E-10 83.6 9.1 179 183-387 130-336 (389)
102 TIGR03346 chaperone_ClpB ATP-d 98.0 7.4E-05 1.6E-09 86.2 15.3 158 184-361 173-349 (852)
103 PRK11331 5-methylcytosine-spec 98.0 4.8E-05 1E-09 79.2 12.1 121 184-316 175-298 (459)
104 TIGR00362 DnaA chromosomal rep 98.0 0.00022 4.8E-09 75.5 16.9 161 211-392 136-308 (405)
105 PRK06620 hypothetical protein; 98.0 5E-05 1.1E-09 72.5 10.7 140 212-396 45-191 (214)
106 PRK11034 clpA ATP-dependent Cl 98.0 2.1E-05 4.5E-10 88.4 9.0 157 184-361 186-362 (758)
107 PRK08769 DNA polymerase III su 98.0 0.00028 6.1E-09 71.2 16.3 96 290-395 112-209 (319)
108 PRK14088 dnaA chromosomal repl 98.0 0.00016 3.6E-09 76.9 15.2 161 211-392 130-303 (440)
109 PRK10865 protein disaggregatio 98.0 9.9E-05 2.1E-09 84.9 14.4 157 184-361 178-354 (857)
110 PRK00149 dnaA chromosomal repl 98.0 0.00025 5.3E-09 76.2 16.6 159 211-392 148-320 (450)
111 PRK12422 chromosomal replicati 97.9 0.00038 8.3E-09 73.9 16.9 155 211-388 141-307 (445)
112 PF00004 AAA: ATPase family as 97.9 2.2E-05 4.7E-10 68.8 6.2 69 214-303 1-70 (132)
113 PRK14086 dnaA chromosomal repl 97.9 0.00029 6.3E-09 76.4 15.4 160 212-392 315-486 (617)
114 PRK08058 DNA polymerase III su 97.9 0.00035 7.6E-09 71.6 15.5 164 185-360 6-181 (329)
115 PRK06871 DNA polymerase III su 97.9 0.00067 1.5E-08 68.6 17.0 176 193-391 11-200 (325)
116 PRK06090 DNA polymerase III su 97.9 0.00074 1.6E-08 68.2 16.9 165 193-394 12-201 (319)
117 PF13177 DNA_pol3_delta2: DNA 97.8 0.00027 5.8E-09 64.5 11.1 137 188-349 1-162 (162)
118 COG0593 DnaA ATPase involved i 97.8 0.0016 3.4E-08 67.3 17.8 135 210-364 112-260 (408)
119 PRK07993 DNA polymerase III su 97.8 0.00098 2.1E-08 68.1 16.2 177 193-392 11-202 (334)
120 COG2812 DnaX DNA polymerase II 97.7 0.00013 2.9E-09 77.4 9.8 189 185-389 17-215 (515)
121 TIGR00602 rad24 checkpoint pro 97.7 0.00027 5.8E-09 77.6 12.2 210 183-398 83-327 (637)
122 TIGR02640 gas_vesic_GvpN gas v 97.7 0.0012 2.7E-08 65.3 16.0 42 213-259 23-64 (262)
123 COG3267 ExeA Type II secretory 97.7 0.0023 5E-08 61.0 16.5 184 209-397 49-248 (269)
124 TIGR00763 lon ATP-dependent pr 97.7 0.0059 1.3E-07 70.0 23.1 165 184-361 320-505 (775)
125 PRK10536 hypothetical protein; 97.7 0.0012 2.6E-08 63.9 14.4 135 184-331 55-213 (262)
126 TIGR03689 pup_AAA proteasome A 97.7 0.0004 8.7E-09 74.3 12.3 167 184-361 182-378 (512)
127 PRK08116 hypothetical protein; 97.7 0.00016 3.6E-09 71.5 8.7 104 212-331 115-221 (268)
128 PRK06964 DNA polymerase III su 97.7 0.0014 3E-08 66.9 15.5 93 290-394 131-225 (342)
129 smart00382 AAA ATPases associa 97.7 0.00025 5.4E-09 62.4 9.1 88 212-304 3-91 (148)
130 PTZ00361 26 proteosome regulat 97.7 0.00016 3.4E-09 76.2 8.9 157 185-362 184-368 (438)
131 PF10443 RNA12: RNA12 protein; 97.6 0.0021 4.6E-08 66.2 15.9 275 189-502 1-371 (431)
132 CHL00176 ftsH cell division pr 97.6 0.00097 2.1E-08 73.8 14.3 177 184-386 183-386 (638)
133 COG0466 Lon ATP-dependent Lon 97.6 0.00042 9.2E-09 74.7 10.9 166 183-362 322-509 (782)
134 COG1373 Predicted ATPase (AAA+ 97.6 0.00096 2.1E-08 70.0 13.4 119 213-357 39-163 (398)
135 PTZ00454 26S protease regulato 97.5 0.00025 5.5E-09 74.1 8.5 179 184-388 145-351 (398)
136 KOG0991 Replication factor C, 97.5 0.0017 3.8E-08 60.6 12.7 44 184-233 27-70 (333)
137 TIGR01241 FtsH_fam ATP-depende 97.5 0.0012 2.7E-08 71.7 13.6 185 184-394 55-267 (495)
138 TIGR02639 ClpA ATP-dependent C 97.5 0.0012 2.6E-08 75.1 14.0 135 184-330 454-603 (731)
139 PRK10787 DNA-binding ATP-depen 97.5 0.0007 1.5E-08 76.9 11.6 166 183-361 321-506 (784)
140 KOG0741 AAA+-type ATPase [Post 97.4 0.0033 7.2E-08 65.4 14.6 161 209-398 536-716 (744)
141 PRK13531 regulatory ATPase Rav 97.4 0.00071 1.5E-08 71.2 9.8 152 185-360 21-193 (498)
142 PRK08181 transposase; Validate 97.4 0.00058 1.3E-08 67.4 8.4 101 212-331 107-209 (269)
143 TIGR03345 VI_ClpV1 type VI sec 97.4 0.0004 8.6E-09 79.7 8.2 138 184-330 566-718 (852)
144 PRK10865 protein disaggregatio 97.4 0.0016 3.4E-08 75.2 13.0 137 184-330 568-720 (857)
145 KOG1514 Origin recognition com 97.4 0.0064 1.4E-07 65.7 16.5 208 184-397 396-624 (767)
146 KOG2228 Origin recognition com 97.4 0.0019 4.1E-08 63.7 11.5 174 184-361 24-219 (408)
147 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00085 1.8E-08 77.6 10.8 137 184-330 565-717 (852)
148 PRK09361 radB DNA repair and r 97.4 0.0012 2.7E-08 63.7 10.4 88 209-300 21-116 (225)
149 PRK12608 transcription termina 97.4 0.0022 4.8E-08 65.4 12.2 103 192-300 119-229 (380)
150 cd01123 Rad51_DMC1_radA Rad51_ 97.4 0.00096 2.1E-08 65.0 9.4 91 209-300 17-124 (235)
151 COG0542 clpA ATP-binding subun 97.3 0.00056 1.2E-08 75.8 8.0 135 184-330 491-643 (786)
152 PF04665 Pox_A32: Poxvirus A32 97.3 0.00054 1.2E-08 65.8 7.0 36 212-249 14-49 (241)
153 COG0470 HolB ATPase involved i 97.3 0.0016 3.4E-08 66.8 11.0 145 185-350 2-170 (325)
154 PF02562 PhoH: PhoH-like prote 97.3 0.0013 2.8E-08 61.8 9.0 131 188-331 4-156 (205)
155 PRK08699 DNA polymerase III su 97.3 0.004 8.7E-08 63.4 13.3 71 290-360 112-184 (325)
156 PRK08939 primosomal protein Dn 97.3 0.00092 2E-08 67.4 8.5 122 188-330 135-260 (306)
157 CHL00095 clpC Clp protease ATP 97.2 0.0013 2.7E-08 75.9 10.3 138 184-331 509-662 (821)
158 PRK08118 topology modulation p 97.2 0.00016 3.4E-09 66.3 2.2 34 213-246 3-37 (167)
159 PF01695 IstB_IS21: IstB-like 97.2 0.00047 1E-08 63.8 5.4 102 211-331 47-150 (178)
160 PF07693 KAP_NTPase: KAP famil 97.2 0.011 2.4E-07 60.6 16.1 45 190-237 2-46 (325)
161 TIGR02237 recomb_radB DNA repa 97.2 0.0015 3.3E-08 62.3 9.1 88 209-300 10-106 (209)
162 COG2607 Predicted ATPase (AAA+ 97.2 0.0019 4.1E-08 60.8 9.0 124 180-331 56-183 (287)
163 PRK04132 replication factor C 97.2 0.0063 1.4E-07 69.0 14.7 158 219-397 574-734 (846)
164 PRK07952 DNA replication prote 97.2 0.0017 3.8E-08 63.0 8.9 83 211-310 99-181 (244)
165 PRK06526 transposase; Provisio 97.2 0.00073 1.6E-08 66.3 6.3 23 212-234 99-121 (254)
166 TIGR02902 spore_lonB ATP-depen 97.2 0.0016 3.4E-08 71.1 9.4 172 185-362 66-277 (531)
167 COG1223 Predicted ATPase (AAA+ 97.1 0.0033 7.1E-08 59.8 9.6 157 184-361 121-297 (368)
168 smart00763 AAA_PrkA PrkA AAA d 97.1 0.00048 1E-08 69.9 4.3 51 185-235 52-102 (361)
169 PRK09183 transposase/IS protei 97.1 0.0013 2.8E-08 64.8 7.3 23 212-234 103-125 (259)
170 PRK04296 thymidine kinase; Pro 97.1 0.0012 2.6E-08 61.9 6.5 114 212-332 3-117 (190)
171 PF08423 Rad51: Rad51; InterP 97.0 0.0027 5.9E-08 62.4 8.9 90 210-300 37-142 (256)
172 PRK12377 putative replication 97.0 0.0037 8.1E-08 60.9 9.7 102 211-330 101-205 (248)
173 PRK11034 clpA ATP-dependent Cl 97.0 0.0027 5.8E-08 71.7 9.6 133 185-329 459-606 (758)
174 cd01393 recA_like RecA is a b 97.0 0.007 1.5E-07 58.5 11.4 90 209-301 17-124 (226)
175 PRK06921 hypothetical protein; 97.0 0.0023 4.9E-08 63.4 7.9 38 211-249 117-154 (266)
176 PF07728 AAA_5: AAA domain (dy 97.0 0.00019 4.2E-09 63.6 0.3 86 214-314 2-88 (139)
177 CHL00195 ycf46 Ycf46; Provisio 97.0 0.0049 1.1E-07 66.1 10.9 158 185-363 229-407 (489)
178 cd00983 recA RecA is a bacter 97.0 0.002 4.4E-08 64.9 7.4 85 209-300 53-142 (325)
179 cd01394 radB RadB. The archaea 97.0 0.006 1.3E-07 58.6 10.4 44 209-254 17-60 (218)
180 KOG0733 Nuclear AAA ATPase (VC 97.0 0.019 4.1E-07 61.1 14.4 98 184-302 190-293 (802)
181 TIGR01243 CDC48 AAA family ATP 96.9 0.0065 1.4E-07 69.4 12.2 179 184-388 178-381 (733)
182 TIGR02012 tigrfam_recA protein 96.9 0.0023 4.9E-08 64.6 7.5 86 209-301 53-143 (321)
183 KOG0744 AAA+-type ATPase [Post 96.9 0.0033 7.2E-08 61.6 8.2 79 211-300 177-259 (423)
184 PRK11889 flhF flagellar biosyn 96.9 0.0074 1.6E-07 61.9 11.1 89 210-302 240-331 (436)
185 TIGR01243 CDC48 AAA family ATP 96.9 0.0094 2E-07 68.1 13.3 179 184-388 453-657 (733)
186 KOG0733 Nuclear AAA ATPase (VC 96.9 0.011 2.3E-07 62.9 12.3 156 210-388 544-718 (802)
187 KOG2035 Replication factor C, 96.9 0.0083 1.8E-07 57.7 10.5 209 186-417 15-261 (351)
188 PF00448 SRP54: SRP54-type pro 96.9 0.0061 1.3E-07 57.3 9.7 89 211-301 1-93 (196)
189 PHA00729 NTP-binding motif con 96.9 0.0033 7.3E-08 59.7 7.9 25 210-234 16-40 (226)
190 COG0542 clpA ATP-binding subun 96.9 0.0022 4.7E-08 71.2 7.4 155 184-359 170-344 (786)
191 PRK09354 recA recombinase A; P 96.9 0.0031 6.7E-08 64.1 7.9 86 209-301 58-148 (349)
192 PRK07261 topology modulation p 96.9 0.003 6.5E-08 58.2 7.1 65 213-301 2-67 (171)
193 PRK05541 adenylylsulfate kinas 96.9 0.0029 6.2E-08 58.6 7.1 36 210-247 6-41 (176)
194 PRK06835 DNA replication prote 96.9 0.0016 3.5E-08 66.2 5.7 102 212-330 184-288 (329)
195 PF00158 Sigma54_activat: Sigm 96.9 0.0019 4E-08 59.2 5.6 132 186-331 1-144 (168)
196 KOG0735 AAA+-type ATPase [Post 96.8 0.0061 1.3E-07 65.8 9.9 153 210-387 430-608 (952)
197 PF13207 AAA_17: AAA domain; P 96.8 0.00092 2E-08 57.6 3.2 22 213-234 1-22 (121)
198 KOG0730 AAA+-type ATPase [Post 96.8 0.011 2.3E-07 63.7 11.5 158 185-363 435-617 (693)
199 COG1222 RPT1 ATP-dependent 26S 96.8 0.015 3.3E-07 58.1 11.7 186 186-398 153-371 (406)
200 PF14532 Sigma54_activ_2: Sigm 96.8 0.00094 2E-08 59.1 3.1 108 187-331 1-110 (138)
201 PTZ00494 tuzin-like protein; P 96.8 0.097 2.1E-06 54.1 17.5 168 181-360 368-543 (664)
202 PLN03187 meiotic recombination 96.8 0.0062 1.3E-07 62.2 9.0 91 209-300 124-230 (344)
203 TIGR02238 recomb_DMC1 meiotic 96.7 0.0066 1.4E-07 61.4 9.1 91 209-300 94-200 (313)
204 KOG1969 DNA replication checkp 96.7 0.0049 1.1E-07 66.7 8.3 83 208-311 323-407 (877)
205 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.0066 1.4E-07 54.6 8.0 117 212-331 3-138 (159)
206 PRK07132 DNA polymerase III su 96.7 0.11 2.4E-06 52.1 17.3 157 210-393 17-184 (299)
207 TIGR01817 nifA Nif-specific re 96.7 0.0073 1.6E-07 66.4 9.6 137 182-331 194-341 (534)
208 TIGR02239 recomb_RAD51 DNA rep 96.7 0.01 2.3E-07 60.2 10.0 58 209-267 94-155 (316)
209 cd01120 RecA-like_NTPases RecA 96.7 0.01 2.3E-07 53.6 9.1 39 213-253 1-39 (165)
210 PLN00020 ribulose bisphosphate 96.7 0.0034 7.4E-08 63.5 6.1 26 209-234 146-171 (413)
211 TIGR03499 FlhF flagellar biosy 96.6 0.01 2.2E-07 59.4 9.5 87 210-300 193-281 (282)
212 KOG1051 Chaperone HSP104 and r 96.6 0.0093 2E-07 67.3 9.9 121 185-317 563-686 (898)
213 PRK06696 uridine kinase; Valid 96.6 0.0025 5.4E-08 61.5 4.9 44 188-234 2-45 (223)
214 COG1484 DnaC DNA replication p 96.6 0.0083 1.8E-07 58.9 8.5 82 210-309 104-185 (254)
215 PRK13695 putative NTPase; Prov 96.6 0.0036 7.7E-08 57.9 5.5 23 213-235 2-24 (174)
216 TIGR02974 phageshock_pspF psp 96.6 0.009 2E-07 61.1 8.8 132 186-331 1-144 (329)
217 PRK06067 flagellar accessory p 96.6 0.015 3.2E-07 56.6 9.9 88 209-301 23-130 (234)
218 TIGR01650 PD_CobS cobaltochela 96.6 0.084 1.8E-06 53.3 15.3 69 177-259 39-107 (327)
219 PF13604 AAA_30: AAA domain; P 96.5 0.0033 7E-08 59.3 5.0 106 212-330 19-130 (196)
220 PF07724 AAA_2: AAA domain (Cd 96.5 0.0021 4.5E-08 59.1 3.6 41 211-252 3-43 (171)
221 PLN03186 DNA repair protein RA 96.5 0.018 3.8E-07 58.9 10.6 58 209-267 121-182 (342)
222 KOG2004 Mitochondrial ATP-depe 96.5 0.0037 7.9E-08 67.5 5.7 105 183-301 410-515 (906)
223 PRK04301 radA DNA repair and r 96.5 0.015 3.2E-07 59.4 9.9 57 209-266 100-160 (317)
224 TIGR02236 recomb_radA DNA repa 96.5 0.017 3.6E-07 58.9 10.3 56 210-266 94-153 (310)
225 COG0468 RecA RecA/RadA recombi 96.5 0.017 3.8E-07 56.9 9.6 90 209-300 58-150 (279)
226 KOG0731 AAA+-type ATPase conta 96.4 0.047 1E-06 60.5 13.7 182 185-391 312-521 (774)
227 PRK15455 PrkA family serine pr 96.4 0.0022 4.8E-08 68.5 3.3 50 185-234 77-126 (644)
228 PRK11608 pspF phage shock prot 96.4 0.0062 1.3E-07 62.3 6.1 133 185-331 7-151 (326)
229 PRK08233 hypothetical protein; 96.3 0.012 2.6E-07 54.7 7.5 24 211-234 3-26 (182)
230 PHA02244 ATPase-like protein 96.3 0.017 3.6E-07 59.0 8.8 22 213-234 121-142 (383)
231 COG1136 SalX ABC-type antimicr 96.3 0.033 7.2E-07 53.0 10.2 60 279-338 148-210 (226)
232 COG1618 Predicted nucleotide k 96.3 0.0043 9.4E-08 54.8 3.9 32 211-243 5-36 (179)
233 PRK14722 flhF flagellar biosyn 96.3 0.017 3.7E-07 59.5 9.0 89 211-302 137-226 (374)
234 cd00544 CobU Adenosylcobinamid 96.3 0.0075 1.6E-07 55.2 5.6 37 214-255 2-38 (169)
235 PTZ00035 Rad51 protein; Provis 96.3 0.037 8.1E-07 56.7 11.3 91 209-300 116-222 (337)
236 COG0572 Udk Uridine kinase [Nu 96.3 0.01 2.2E-07 55.9 6.5 79 209-292 6-85 (218)
237 PRK15429 formate hydrogenlyase 96.3 0.011 2.4E-07 67.1 8.0 134 184-331 376-521 (686)
238 PRK05439 pantothenate kinase; 96.3 0.03 6.5E-07 56.3 10.2 84 208-292 83-166 (311)
239 PF00154 RecA: recA bacterial 96.3 0.017 3.7E-07 58.1 8.4 86 209-301 51-141 (322)
240 cd01131 PilT Pilus retraction 96.2 0.0085 1.8E-07 56.6 5.9 111 212-334 2-112 (198)
241 TIGR00959 ffh signal recogniti 96.2 0.036 7.8E-07 58.5 11.0 26 209-234 97-122 (428)
242 PTZ00301 uridine kinase; Provi 96.2 0.011 2.4E-07 56.1 6.6 23 211-233 3-25 (210)
243 cd03214 ABC_Iron-Siderophores_ 96.2 0.034 7.4E-07 51.6 9.8 119 212-334 26-161 (180)
244 COG2884 FtsE Predicted ATPase 96.2 0.037 8E-07 50.5 9.3 126 210-338 27-204 (223)
245 cd03238 ABC_UvrA The excision 96.2 0.025 5.5E-07 52.1 8.7 115 211-335 21-153 (176)
246 COG1875 NYN ribonuclease and A 96.2 0.049 1.1E-06 54.7 10.9 133 186-330 226-387 (436)
247 PRK14974 cell division protein 96.2 0.04 8.6E-07 56.2 10.7 91 210-303 139-234 (336)
248 COG4608 AppF ABC-type oligopep 96.2 0.016 3.4E-07 56.2 7.3 125 211-338 39-177 (268)
249 TIGR00708 cobA cob(I)alamin ad 96.1 0.023 4.9E-07 51.8 7.9 117 211-331 5-140 (173)
250 PRK07667 uridine kinase; Provi 96.1 0.0081 1.8E-07 56.5 5.1 38 193-234 3-40 (193)
251 cd01133 F1-ATPase_beta F1 ATP 96.1 0.028 6.1E-07 55.2 8.9 88 210-300 68-172 (274)
252 PRK07276 DNA polymerase III su 96.1 0.28 6E-06 49.0 16.1 69 290-359 103-173 (290)
253 PRK05800 cobU adenosylcobinami 96.1 0.0059 1.3E-07 56.0 4.0 21 213-233 3-23 (170)
254 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.053 1.2E-06 52.8 10.9 50 209-262 19-68 (237)
255 cd01125 repA Hexameric Replica 96.1 0.034 7.4E-07 54.2 9.5 22 213-234 3-24 (239)
256 cd02025 PanK Pantothenate kina 96.1 0.027 5.9E-07 54.1 8.6 76 213-289 1-76 (220)
257 cd03247 ABCC_cytochrome_bd The 96.1 0.035 7.5E-07 51.4 9.1 23 212-234 29-51 (178)
258 PRK15424 propionate catabolism 96.1 0.06 1.3E-06 58.6 12.1 46 185-234 220-265 (538)
259 PRK05917 DNA polymerase III su 96.1 0.17 3.7E-06 50.3 14.3 131 193-348 6-154 (290)
260 PRK05703 flhF flagellar biosyn 96.1 0.05 1.1E-06 57.6 11.3 87 211-301 221-309 (424)
261 PF10236 DAP3: Mitochondrial r 96.1 0.16 3.4E-06 51.6 14.4 49 342-391 258-306 (309)
262 TIGR02329 propionate_PrpR prop 96.1 0.064 1.4E-06 58.3 12.2 46 185-234 213-258 (526)
263 PF08433 KTI12: Chromatin asso 96.1 0.021 4.6E-07 56.5 7.9 24 212-235 2-25 (270)
264 PRK00771 signal recognition pa 96.0 0.033 7.3E-07 58.8 9.8 27 210-236 94-120 (437)
265 cd01122 GP4d_helicase GP4d_hel 96.0 0.061 1.3E-06 53.5 11.3 53 211-266 30-82 (271)
266 COG0563 Adk Adenylate kinase a 96.0 0.013 2.8E-07 54.1 5.9 22 213-234 2-23 (178)
267 COG0464 SpoVK ATPases of the A 96.0 0.053 1.1E-06 59.1 11.6 133 209-362 274-424 (494)
268 TIGR00554 panK_bact pantothena 96.0 0.041 8.9E-07 54.9 9.8 81 209-292 60-142 (290)
269 KOG0734 AAA+-type ATPase conta 96.0 0.013 2.9E-07 61.2 6.4 96 185-301 305-406 (752)
270 PRK12727 flagellar biosynthesi 96.0 0.039 8.5E-07 59.0 10.0 88 210-301 349-438 (559)
271 PRK09519 recA DNA recombinatio 96.0 0.032 7E-07 62.6 9.8 86 209-301 58-148 (790)
272 PRK12723 flagellar biosynthesi 96.0 0.048 1E-06 56.7 10.5 89 210-302 173-265 (388)
273 cd03115 SRP The signal recogni 96.0 0.049 1.1E-06 50.1 9.6 22 213-234 2-23 (173)
274 PF13238 AAA_18: AAA domain; P 96.0 0.0052 1.1E-07 53.3 2.9 21 214-234 1-21 (129)
275 PRK10867 signal recognition pa 96.0 0.033 7.3E-07 58.7 9.3 25 210-234 99-123 (433)
276 cd03281 ABC_MSH5_euk MutS5 hom 96.0 0.014 2.9E-07 55.9 5.9 23 211-233 29-51 (213)
277 COG1419 FlhF Flagellar GTP-bin 96.0 0.031 6.7E-07 57.4 8.7 87 211-301 203-291 (407)
278 cd01121 Sms Sms (bacterial rad 95.9 0.061 1.3E-06 55.8 10.9 84 210-301 81-168 (372)
279 PRK05022 anaerobic nitric oxid 95.9 0.015 3.2E-07 63.5 6.7 135 183-331 186-332 (509)
280 cd03228 ABCC_MRP_Like The MRP 95.9 0.045 9.7E-07 50.3 9.0 119 211-336 28-160 (171)
281 PRK09270 nucleoside triphospha 95.9 0.036 7.9E-07 53.6 8.8 26 209-234 31-56 (229)
282 cd03216 ABC_Carb_Monos_I This 95.9 0.021 4.6E-07 52.1 6.7 116 212-335 27-146 (163)
283 PF03308 ArgK: ArgK protein; 95.9 0.016 3.5E-07 55.8 5.9 64 192-259 14-77 (266)
284 PRK12724 flagellar biosynthesi 95.9 0.033 7.1E-07 58.0 8.6 25 210-234 222-246 (432)
285 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.9 0.047 1E-06 48.6 8.6 104 212-335 27-131 (144)
286 PRK08533 flagellar accessory p 95.9 0.052 1.1E-06 52.6 9.5 49 210-262 23-71 (230)
287 COG1121 ZnuC ABC-type Mn/Zn tr 95.8 0.032 6.9E-07 54.0 7.7 122 212-335 31-203 (254)
288 cd03223 ABCD_peroxisomal_ALDP 95.8 0.075 1.6E-06 48.6 9.9 116 211-335 27-152 (166)
289 PRK05480 uridine/cytidine kina 95.8 0.0087 1.9E-07 57.1 3.7 26 209-234 4-29 (209)
290 PF13671 AAA_33: AAA domain; P 95.8 0.0075 1.6E-07 53.5 3.1 21 213-233 1-21 (143)
291 PF00485 PRK: Phosphoribulokin 95.8 0.0072 1.6E-07 56.9 3.1 81 213-295 1-87 (194)
292 PRK10733 hflB ATP-dependent me 95.8 0.044 9.5E-07 61.4 9.8 157 185-362 153-336 (644)
293 COG1703 ArgK Putative periplas 95.8 0.017 3.8E-07 56.4 5.6 67 194-264 38-104 (323)
294 PF01583 APS_kinase: Adenylyls 95.8 0.017 3.7E-07 51.7 5.2 35 212-248 3-37 (156)
295 TIGR03878 thermo_KaiC_2 KaiC d 95.7 0.068 1.5E-06 52.8 10.0 42 209-252 34-75 (259)
296 TIGR02858 spore_III_AA stage I 95.7 0.1 2.2E-06 51.7 11.0 129 192-335 97-233 (270)
297 cd02019 NK Nucleoside/nucleoti 95.7 0.008 1.7E-07 46.0 2.6 22 213-234 1-22 (69)
298 PF13481 AAA_25: AAA domain; P 95.7 0.0087 1.9E-07 56.2 3.4 41 212-252 33-81 (193)
299 PRK12726 flagellar biosynthesi 95.7 0.081 1.7E-06 54.3 10.4 91 209-302 204-296 (407)
300 TIGR00064 ftsY signal recognit 95.7 0.079 1.7E-06 52.6 10.2 91 209-302 70-165 (272)
301 COG1066 Sms Predicted ATP-depe 95.7 0.064 1.4E-06 54.8 9.5 96 193-301 79-178 (456)
302 PF05659 RPW8: Arabidopsis bro 95.7 0.28 6E-06 43.6 12.5 83 4-86 3-86 (147)
303 PF12775 AAA_7: P-loop contain 95.7 0.022 4.7E-07 56.6 6.2 33 194-233 23-55 (272)
304 PRK06547 hypothetical protein; 95.7 0.016 3.5E-07 53.3 4.9 26 209-234 13-38 (172)
305 PRK06762 hypothetical protein; 95.7 0.0094 2E-07 54.5 3.3 24 211-234 2-25 (166)
306 cd03222 ABC_RNaseL_inhibitor T 95.6 0.052 1.1E-06 50.1 8.2 102 212-335 26-136 (177)
307 cd03246 ABCC_Protease_Secretio 95.6 0.05 1.1E-06 50.1 8.2 22 212-233 29-50 (173)
308 PRK10820 DNA-binding transcrip 95.6 0.027 5.9E-07 61.5 7.2 134 184-331 204-349 (520)
309 PRK05986 cob(I)alamin adenolsy 95.6 0.041 8.9E-07 50.9 7.3 119 211-331 22-158 (191)
310 TIGR00235 udk uridine kinase. 95.6 0.011 2.4E-07 56.3 3.5 25 210-234 5-29 (207)
311 cd02028 UMPK_like Uridine mono 95.6 0.027 5.9E-07 52.2 6.0 22 213-234 1-22 (179)
312 PTZ00088 adenylate kinase 1; P 95.5 0.017 3.7E-07 55.7 4.7 22 213-234 8-29 (229)
313 PF00910 RNA_helicase: RNA hel 95.5 0.015 3.2E-07 48.9 3.7 22 214-235 1-22 (107)
314 COG1102 Cmk Cytidylate kinase 95.5 0.02 4.3E-07 50.7 4.5 44 213-269 2-45 (179)
315 PRK04328 hypothetical protein; 95.5 0.063 1.4E-06 52.7 8.7 41 210-252 22-62 (249)
316 PRK06731 flhF flagellar biosyn 95.4 0.11 2.5E-06 51.2 10.2 90 211-303 75-166 (270)
317 TIGR00390 hslU ATP-dependent p 95.4 0.039 8.4E-07 57.3 7.1 51 184-234 12-70 (441)
318 cd03230 ABC_DR_subfamily_A Thi 95.4 0.086 1.9E-06 48.5 8.7 119 211-335 26-159 (173)
319 PRK13948 shikimate kinase; Pro 95.4 0.19 4.2E-06 46.6 10.9 26 209-234 8-33 (182)
320 cd02024 NRK1 Nicotinamide ribo 95.3 0.028 6.1E-07 52.3 5.3 22 213-234 1-22 (187)
321 PF08298 AAA_PrkA: PrkA AAA do 95.3 0.019 4.2E-07 57.9 4.4 50 184-233 61-110 (358)
322 KOG1970 Checkpoint RAD17-RFC c 95.3 0.28 6.1E-06 52.0 12.9 44 190-233 88-132 (634)
323 KOG0743 AAA+-type ATPase [Post 95.3 0.34 7.3E-06 50.3 13.4 23 212-234 236-258 (457)
324 TIGR03575 selen_PSTK_euk L-ser 95.3 0.065 1.4E-06 54.6 8.3 22 214-235 2-23 (340)
325 COG2842 Uncharacterized ATPase 95.3 0.12 2.7E-06 50.6 9.8 120 184-317 72-191 (297)
326 PF06745 KaiC: KaiC; InterPro 95.3 0.052 1.1E-06 52.4 7.3 87 209-300 17-124 (226)
327 PRK11823 DNA repair protein Ra 95.3 0.11 2.4E-06 55.5 10.3 84 210-301 79-166 (446)
328 cd02027 APSK Adenosine 5'-phos 95.2 0.049 1.1E-06 48.8 6.5 22 213-234 1-22 (149)
329 TIGR01360 aden_kin_iso1 adenyl 95.2 0.015 3.3E-07 54.2 3.3 24 210-233 2-25 (188)
330 PF07726 AAA_3: ATPase family 95.2 0.019 4.1E-07 49.3 3.4 27 214-242 2-28 (131)
331 PRK03839 putative kinase; Prov 95.2 0.015 3.3E-07 54.0 3.1 22 213-234 2-23 (180)
332 COG0714 MoxR-like ATPases [Gen 95.2 0.042 9.2E-07 56.4 6.7 66 185-263 25-90 (329)
333 COG0467 RAD55 RecA-superfamily 95.2 0.051 1.1E-06 53.7 7.0 51 209-263 21-71 (260)
334 TIGR00416 sms DNA repair prote 95.2 0.14 3E-06 54.9 10.6 97 193-301 80-180 (454)
335 PRK14721 flhF flagellar biosyn 95.2 0.13 2.8E-06 54.0 10.3 25 210-234 190-214 (420)
336 PRK00131 aroK shikimate kinase 95.2 0.017 3.6E-07 53.2 3.3 25 210-234 3-27 (175)
337 PRK04040 adenylate kinase; Pro 95.1 0.018 3.8E-07 53.9 3.3 23 212-234 3-25 (188)
338 PF13479 AAA_24: AAA domain 95.1 0.079 1.7E-06 50.7 7.8 31 212-252 4-34 (213)
339 PRK11388 DNA-binding transcrip 95.1 0.053 1.1E-06 61.1 7.7 131 185-331 326-467 (638)
340 TIGR03881 KaiC_arch_4 KaiC dom 95.1 0.15 3.3E-06 49.3 9.9 41 210-252 19-59 (229)
341 cd03282 ABC_MSH4_euk MutS4 hom 95.1 0.038 8.2E-07 52.4 5.4 121 211-338 29-158 (204)
342 PF00006 ATP-synt_ab: ATP synt 95.1 0.056 1.2E-06 51.5 6.5 84 211-300 15-114 (215)
343 PRK14723 flhF flagellar biosyn 95.0 0.18 3.9E-06 56.7 11.3 25 211-235 185-209 (767)
344 COG4240 Predicted kinase [Gene 95.0 0.11 2.4E-06 48.7 8.1 84 209-293 48-135 (300)
345 KOG0728 26S proteasome regulat 95.0 0.59 1.3E-05 44.5 12.9 155 186-361 148-331 (404)
346 KOG0736 Peroxisome assembly fa 95.0 0.16 3.4E-06 55.9 10.3 97 185-302 673-775 (953)
347 PF03969 AFG1_ATPase: AFG1-lik 95.0 0.053 1.2E-06 56.0 6.7 84 209-307 60-143 (362)
348 PF13245 AAA_19: Part of AAA d 95.0 0.052 1.1E-06 42.3 5.1 22 212-233 11-33 (76)
349 KOG0729 26S proteasome regulat 95.0 0.17 3.7E-06 48.5 9.4 48 186-233 179-233 (435)
350 TIGR02322 phosphon_PhnN phosph 95.0 0.019 4.1E-07 53.2 3.1 23 212-234 2-24 (179)
351 TIGR03522 GldA_ABC_ATP gliding 95.0 0.14 3.1E-06 51.8 9.7 23 211-233 28-50 (301)
352 TIGR00150 HI0065_YjeE ATPase, 95.0 0.036 7.9E-07 48.3 4.5 41 191-235 6-46 (133)
353 TIGR02655 circ_KaiC circadian 94.9 0.13 2.9E-06 55.7 9.8 61 193-261 249-309 (484)
354 PRK06995 flhF flagellar biosyn 94.9 0.14 2.9E-06 54.8 9.6 88 211-301 256-344 (484)
355 cd02023 UMPK Uridine monophosp 94.9 0.017 3.7E-07 54.5 2.6 22 213-234 1-22 (198)
356 KOG2170 ATPase of the AAA+ sup 94.9 0.12 2.6E-06 50.6 8.3 114 185-316 83-203 (344)
357 TIGR01359 UMP_CMP_kin_fam UMP- 94.9 0.017 3.8E-07 53.6 2.6 21 213-233 1-21 (183)
358 PRK05342 clpX ATP-dependent pr 94.9 0.053 1.2E-06 57.0 6.5 50 184-233 71-130 (412)
359 PRK06002 fliI flagellum-specif 94.9 0.072 1.6E-06 56.1 7.3 88 210-300 164-263 (450)
360 cd00984 DnaB_C DnaB helicase C 94.9 0.2 4.3E-06 48.9 10.1 53 210-265 12-64 (242)
361 cd03217 ABC_FeS_Assembly ABC-t 94.9 0.13 2.9E-06 48.5 8.6 24 211-234 26-49 (200)
362 PRK00625 shikimate kinase; Pro 94.9 0.021 4.5E-07 52.5 2.9 22 213-234 2-23 (173)
363 KOG3347 Predicted nucleotide k 94.8 0.035 7.7E-07 48.4 4.0 71 210-291 6-76 (176)
364 PF03193 DUF258: Protein of un 94.8 0.041 9E-07 49.5 4.7 35 191-234 24-58 (161)
365 TIGR01425 SRP54_euk signal rec 94.8 0.12 2.6E-06 54.3 8.8 26 209-234 98-123 (429)
366 PF03266 NTPase_1: NTPase; In 94.8 0.029 6.2E-07 51.3 3.8 22 214-235 2-23 (168)
367 PRK10751 molybdopterin-guanine 94.8 0.029 6.4E-07 51.3 3.8 27 209-235 4-30 (173)
368 cd00227 CPT Chloramphenicol (C 94.8 0.022 4.8E-07 52.6 3.0 23 212-234 3-25 (175)
369 cd02021 GntK Gluconate kinase 94.8 0.02 4.3E-07 51.3 2.6 21 213-233 1-21 (150)
370 COG1936 Predicted nucleotide k 94.8 0.021 4.7E-07 51.2 2.6 20 213-232 2-21 (180)
371 cd03243 ABC_MutS_homologs The 94.8 0.03 6.4E-07 53.1 3.8 22 212-233 30-51 (202)
372 PRK05201 hslU ATP-dependent pr 94.7 0.077 1.7E-06 55.2 7.0 52 183-234 14-73 (443)
373 COG1428 Deoxynucleoside kinase 94.7 0.025 5.5E-07 52.6 3.0 25 211-235 4-28 (216)
374 PRK12597 F0F1 ATP synthase sub 94.7 0.1 2.2E-06 55.4 7.8 90 210-300 142-246 (461)
375 PF00625 Guanylate_kin: Guanyl 94.7 0.036 7.8E-07 51.6 4.1 36 211-248 2-37 (183)
376 TIGR03263 guanyl_kin guanylate 94.6 0.025 5.4E-07 52.4 3.0 22 212-233 2-23 (180)
377 PRK00889 adenylylsulfate kinas 94.6 0.032 6.9E-07 51.5 3.6 26 210-235 3-28 (175)
378 PRK15453 phosphoribulokinase; 94.6 0.2 4.4E-06 49.3 9.2 79 209-290 3-89 (290)
379 PRK13765 ATP-dependent proteas 94.6 0.062 1.3E-06 59.6 6.3 74 184-267 31-104 (637)
380 PRK09280 F0F1 ATP synthase sub 94.6 0.16 3.5E-06 53.7 9.1 90 210-300 143-247 (463)
381 KOG1532 GTPase XAB1, interacts 94.6 0.039 8.4E-07 53.1 4.0 30 208-237 16-45 (366)
382 PF06309 Torsin: Torsin; Inte 94.5 0.072 1.6E-06 45.6 5.2 46 186-234 27-76 (127)
383 TIGR01420 pilT_fam pilus retra 94.5 0.12 2.6E-06 53.3 7.9 109 212-332 123-231 (343)
384 PF08477 Miro: Miro-like prote 94.5 0.03 6.5E-07 47.7 3.0 22 214-235 2-23 (119)
385 PRK10923 glnG nitrogen regulat 94.5 0.07 1.5E-06 57.8 6.5 46 185-234 139-184 (469)
386 PRK06217 hypothetical protein; 94.5 0.028 6E-07 52.4 2.9 23 213-235 3-25 (183)
387 PF13086 AAA_11: AAA domain; P 94.5 0.078 1.7E-06 51.1 6.1 21 213-233 19-39 (236)
388 PF03215 Rad17: Rad17 cell cyc 94.5 0.044 9.6E-07 59.3 4.7 59 185-248 20-78 (519)
389 cd01124 KaiC KaiC is a circadi 94.4 0.05 1.1E-06 50.7 4.5 45 213-261 1-45 (187)
390 PRK14737 gmk guanylate kinase; 94.4 0.035 7.6E-07 51.7 3.4 24 210-233 3-26 (186)
391 PRK00300 gmk guanylate kinase; 94.4 0.033 7.2E-07 52.8 3.3 24 211-234 5-28 (205)
392 PF03205 MobB: Molybdopterin g 94.4 0.04 8.7E-07 48.7 3.5 39 212-251 1-39 (140)
393 PRK14738 gmk guanylate kinase; 94.4 0.042 9E-07 52.3 3.9 25 209-233 11-35 (206)
394 COG4618 ArpD ABC-type protease 94.4 0.28 6E-06 51.6 10.0 22 212-233 363-384 (580)
395 cd01135 V_A-ATPase_B V/A-type 94.4 0.2 4.4E-06 49.2 8.6 91 210-300 68-175 (276)
396 PRK03846 adenylylsulfate kinas 94.4 0.04 8.7E-07 52.0 3.7 25 209-233 22-46 (198)
397 TIGR00764 lon_rel lon-related 94.4 0.099 2.2E-06 58.0 7.3 74 184-267 18-91 (608)
398 cd02020 CMPK Cytidine monophos 94.3 0.029 6.3E-07 49.9 2.6 21 213-233 1-21 (147)
399 smart00534 MUTSac ATPase domai 94.3 0.036 7.8E-07 51.7 3.3 21 213-233 1-21 (185)
400 PF09848 DUF2075: Uncharacteri 94.3 0.16 3.5E-06 52.6 8.5 41 212-252 2-42 (352)
401 PTZ00185 ATPase alpha subunit; 94.3 0.23 5E-06 52.8 9.3 91 210-300 188-298 (574)
402 PRK10416 signal recognition pa 94.3 0.22 4.8E-06 50.6 9.1 26 210-235 113-138 (318)
403 cd00071 GMPK Guanosine monopho 94.3 0.032 6.8E-07 49.3 2.6 22 213-234 1-22 (137)
404 cd00820 PEPCK_HprK Phosphoenol 94.3 0.04 8.7E-07 45.9 3.0 22 211-232 15-36 (107)
405 PLN02348 phosphoribulokinase 94.2 0.059 1.3E-06 55.6 4.8 26 209-234 47-72 (395)
406 cd02029 PRK_like Phosphoribulo 94.2 0.18 3.8E-06 49.3 7.8 78 213-292 1-85 (277)
407 cd03285 ABC_MSH2_euk MutS2 hom 94.2 0.042 9.1E-07 52.8 3.6 24 210-233 29-52 (222)
408 PRK10078 ribose 1,5-bisphospho 94.2 0.036 7.9E-07 51.7 3.0 22 212-233 3-24 (186)
409 COG0194 Gmk Guanylate kinase [ 94.2 0.043 9.2E-07 50.1 3.2 24 211-234 4-27 (191)
410 PRK08972 fliI flagellum-specif 94.2 0.12 2.6E-06 54.3 6.9 86 210-300 161-261 (444)
411 PRK00698 tmk thymidylate kinas 94.2 0.22 4.8E-06 47.1 8.4 24 212-235 4-27 (205)
412 COG1643 HrpA HrpA-like helicas 94.2 0.18 4E-06 57.3 8.9 132 190-331 52-205 (845)
413 KOG0735 AAA+-type ATPase [Post 94.1 0.13 2.8E-06 56.0 7.2 96 186-302 669-771 (952)
414 PRK12339 2-phosphoglycerate ki 94.1 0.044 9.6E-07 51.5 3.4 24 211-234 3-26 (197)
415 PF01078 Mg_chelatase: Magnesi 94.1 0.074 1.6E-06 49.9 4.8 42 184-233 3-44 (206)
416 PRK13947 shikimate kinase; Pro 94.1 0.036 7.9E-07 50.8 2.8 21 213-233 3-23 (171)
417 cd03280 ABC_MutS2 MutS2 homolo 94.1 0.094 2E-06 49.6 5.7 21 212-232 29-49 (200)
418 KOG0727 26S proteasome regulat 94.1 0.12 2.5E-06 49.2 6.0 50 185-234 156-212 (408)
419 COG1124 DppF ABC-type dipeptid 94.1 0.041 8.8E-07 52.3 3.0 23 211-233 33-55 (252)
420 PRK14530 adenylate kinase; Pro 94.1 0.041 8.9E-07 52.7 3.1 22 213-234 5-26 (215)
421 cd03213 ABCG_EPDR ABCG transpo 94.1 0.22 4.7E-06 46.8 8.0 23 211-233 35-57 (194)
422 COG0529 CysC Adenylylsulfate k 94.0 0.062 1.3E-06 48.5 3.9 26 209-234 21-46 (197)
423 cd01672 TMPK Thymidine monopho 94.0 0.13 2.8E-06 48.2 6.5 23 213-235 2-24 (200)
424 cd00267 ABC_ATPase ABC (ATP-bi 94.0 0.13 2.8E-06 46.5 6.2 118 212-336 26-145 (157)
425 TIGR01818 ntrC nitrogen regula 94.0 0.23 4.9E-06 53.7 9.2 134 185-331 135-279 (463)
426 TIGR01313 therm_gnt_kin carboh 94.0 0.033 7.2E-07 50.7 2.3 20 214-233 1-20 (163)
427 PRK13949 shikimate kinase; Pro 94.0 0.041 8.8E-07 50.5 2.9 22 213-234 3-24 (169)
428 PRK06793 fliI flagellum-specif 94.0 0.22 4.8E-06 52.4 8.7 89 210-301 155-256 (432)
429 PF03796 DnaB_C: DnaB-like hel 94.0 0.16 3.5E-06 50.1 7.4 56 211-269 19-74 (259)
430 PRK14527 adenylate kinase; Pro 94.0 0.049 1.1E-06 51.1 3.5 25 210-234 5-29 (191)
431 cd01129 PulE-GspE PulE/GspE Th 94.0 0.12 2.5E-06 51.2 6.3 81 212-303 81-161 (264)
432 COG2019 AdkA Archaeal adenylat 94.0 0.051 1.1E-06 48.5 3.2 23 211-233 4-26 (189)
433 TIGR00041 DTMP_kinase thymidyl 94.0 0.14 3.1E-06 48.0 6.6 24 212-235 4-27 (195)
434 PLN02796 D-glycerate 3-kinase 94.0 0.4 8.6E-06 48.8 10.0 25 210-234 99-123 (347)
435 cd00464 SK Shikimate kinase (S 94.0 0.042 9.1E-07 49.3 2.9 20 214-233 2-21 (154)
436 COG3640 CooC CO dehydrogenase 94.0 0.1 2.2E-06 49.3 5.4 42 213-255 2-43 (255)
437 COG0396 sufC Cysteine desulfur 93.9 0.5 1.1E-05 44.7 9.8 25 211-235 30-54 (251)
438 PRK13975 thymidylate kinase; P 93.9 0.047 1E-06 51.4 3.2 24 212-235 3-26 (196)
439 TIGR03498 FliI_clade3 flagella 93.9 0.18 4E-06 52.9 7.8 87 210-300 139-239 (418)
440 PLN02924 thymidylate kinase 93.9 0.26 5.7E-06 47.2 8.3 29 209-237 14-42 (220)
441 TIGR01069 mutS2 MutS2 family p 93.9 0.084 1.8E-06 60.2 5.7 24 211-234 322-345 (771)
442 COG1116 TauB ABC-type nitrate/ 93.9 0.047 1E-06 52.3 3.0 22 212-233 30-51 (248)
443 KOG0739 AAA+-type ATPase [Post 93.9 1.6 3.5E-05 42.9 13.3 95 185-301 134-235 (439)
444 COG1126 GlnQ ABC-type polar am 93.9 0.063 1.4E-06 50.2 3.7 35 211-248 28-62 (240)
445 COG5635 Predicted NTPase (NACH 93.9 0.087 1.9E-06 61.0 5.9 182 211-399 222-427 (824)
446 PLN02200 adenylate kinase fami 93.8 0.058 1.3E-06 52.3 3.7 24 210-233 42-65 (234)
447 PF12061 DUF3542: Protein of u 93.8 0.2 4.4E-06 49.0 7.1 54 33-86 319-373 (402)
448 PRK00409 recombination and DNA 93.8 0.039 8.4E-07 63.0 2.7 122 210-337 326-456 (782)
449 PF13521 AAA_28: AAA domain; P 93.7 0.048 1E-06 49.7 2.8 20 214-233 2-21 (163)
450 PRK10875 recD exonuclease V su 93.7 0.28 6.1E-06 54.4 9.2 117 212-331 168-302 (615)
451 PF06414 Zeta_toxin: Zeta toxi 93.7 0.11 2.4E-06 49.1 5.3 90 208-302 12-103 (199)
452 COG0541 Ffh Signal recognition 93.7 0.74 1.6E-05 47.8 11.4 73 193-268 79-156 (451)
453 COG0003 ArsA Predicted ATPase 93.7 0.14 3E-06 51.9 6.1 49 211-261 2-50 (322)
454 PRK12678 transcription termina 93.7 0.25 5.4E-06 53.2 8.2 97 195-300 405-512 (672)
455 PRK14529 adenylate kinase; Pro 93.7 0.2 4.4E-06 47.9 7.0 22 214-235 3-24 (223)
456 cd01136 ATPase_flagellum-secre 93.6 0.4 8.7E-06 48.7 9.4 85 211-300 69-168 (326)
457 PRK08149 ATP synthase SpaL; Va 93.6 0.19 4.1E-06 52.8 7.3 87 210-300 150-250 (428)
458 PRK05057 aroK shikimate kinase 93.6 0.062 1.3E-06 49.4 3.3 23 212-234 5-27 (172)
459 CHL00206 ycf2 Ycf2; Provisiona 93.5 0.47 1E-05 57.9 10.9 25 210-234 1629-1653(2281)
460 PRK09435 membrane ATPase/prote 93.5 0.16 3.4E-06 51.8 6.3 39 194-236 43-81 (332)
461 PF02374 ArsA_ATPase: Anion-tr 93.5 0.11 2.5E-06 52.4 5.3 42 212-255 2-43 (305)
462 TIGR01447 recD exodeoxyribonuc 93.5 0.22 4.8E-06 55.0 7.9 23 212-234 161-183 (586)
463 PF00005 ABC_tran: ABC transpo 93.5 0.06 1.3E-06 47.3 3.0 23 212-234 12-34 (137)
464 PF13555 AAA_29: P-loop contai 93.5 0.079 1.7E-06 39.2 3.0 21 213-233 25-45 (62)
465 TIGR03305 alt_F1F0_F1_bet alte 93.5 0.25 5.4E-06 52.2 7.9 89 210-300 137-241 (449)
466 TIGR02768 TraA_Ti Ti-type conj 93.5 0.47 1E-05 54.2 10.8 105 212-329 369-475 (744)
467 PRK08927 fliI flagellum-specif 93.5 0.37 8.1E-06 50.8 9.1 87 210-300 157-257 (442)
468 TIGR00073 hypB hydrogenase acc 93.5 0.068 1.5E-06 50.8 3.4 26 209-234 20-45 (207)
469 cd01134 V_A-ATPase_A V/A-type 93.4 0.45 9.8E-06 48.3 9.3 49 210-262 156-205 (369)
470 PRK15115 response regulator Gl 93.4 0.16 3.4E-06 54.6 6.7 134 185-331 135-279 (444)
471 PRK06936 type III secretion sy 93.4 0.22 4.7E-06 52.5 7.3 87 210-300 161-261 (439)
472 CHL00081 chlI Mg-protoporyphyr 93.4 0.085 1.8E-06 54.0 4.2 46 183-234 16-61 (350)
473 TIGR01448 recD_rel helicase, p 93.4 0.5 1.1E-05 53.7 10.8 106 212-329 339-451 (720)
474 PRK05973 replicative DNA helic 93.4 0.23 5E-06 48.0 6.9 49 210-262 63-111 (237)
475 COG0465 HflB ATP-dependent Zn 93.4 0.82 1.8E-05 49.9 11.8 182 183-390 149-357 (596)
476 PRK09825 idnK D-gluconate kina 93.4 0.066 1.4E-06 49.5 3.1 23 212-234 4-26 (176)
477 TIGR02868 CydC thiol reductant 93.4 0.21 4.6E-06 55.0 7.6 24 210-233 360-383 (529)
478 PRK08006 replicative DNA helic 93.3 0.62 1.3E-05 50.1 10.8 55 210-267 223-277 (471)
479 cd03227 ABC_Class2 ABC-type Cl 93.3 0.33 7.2E-06 44.1 7.7 22 212-233 22-43 (162)
480 PRK06761 hypothetical protein; 93.3 0.12 2.6E-06 51.2 5.0 24 212-235 4-27 (282)
481 TIGR02915 PEP_resp_reg putativ 93.3 0.14 3E-06 55.0 6.0 133 185-331 140-284 (445)
482 PRK11160 cysteine/glutathione 93.3 0.46 9.9E-06 52.9 10.2 24 210-233 365-388 (574)
483 TIGR02788 VirB11 P-type DNA tr 93.3 0.13 2.8E-06 52.2 5.3 111 211-332 144-254 (308)
484 PRK05818 DNA polymerase III su 93.3 1.3 2.7E-05 43.3 11.8 58 291-348 88-147 (261)
485 PRK14532 adenylate kinase; Pro 93.3 0.063 1.4E-06 50.1 2.9 20 214-233 3-22 (188)
486 PRK07594 type III secretion sy 93.3 0.24 5.2E-06 52.2 7.3 86 210-300 154-254 (433)
487 PRK08356 hypothetical protein; 93.2 0.081 1.8E-06 49.8 3.6 20 212-231 6-25 (195)
488 TIGR03600 phage_DnaB phage rep 93.2 0.7 1.5E-05 49.2 11.1 55 210-267 193-247 (421)
489 cd01428 ADK Adenylate kinase ( 93.2 0.065 1.4E-06 50.2 2.9 21 214-234 2-22 (194)
490 cd01132 F1_ATPase_alpha F1 ATP 93.2 0.2 4.3E-06 49.3 6.2 85 210-300 68-170 (274)
491 TIGR00176 mobB molybdopterin-g 93.2 0.1 2.2E-06 47.0 4.0 34 213-247 1-34 (155)
492 PRK09302 circadian clock prote 93.2 0.45 9.7E-06 52.1 9.8 99 193-300 259-372 (509)
493 PF03029 ATP_bind_1: Conserved 93.2 0.059 1.3E-06 52.3 2.6 32 216-249 1-32 (238)
494 COG2401 ABC-type ATPase fused 93.2 0.084 1.8E-06 53.9 3.7 49 186-234 373-432 (593)
495 PRK05922 type III secretion sy 93.2 0.3 6.5E-06 51.4 7.9 86 211-300 157-256 (434)
496 TIGR01039 atpD ATP synthase, F 93.2 0.51 1.1E-05 49.9 9.5 90 210-300 142-246 (461)
497 TIGR00750 lao LAO/AO transport 93.1 0.16 3.5E-06 51.3 5.7 27 209-235 32-58 (300)
498 TIGR03574 selen_PSTK L-seryl-t 93.1 0.06 1.3E-06 52.9 2.6 22 213-234 1-22 (249)
499 PRK13946 shikimate kinase; Pro 93.1 0.076 1.7E-06 49.5 3.1 24 211-234 10-33 (184)
500 PRK14531 adenylate kinase; Pro 93.1 0.079 1.7E-06 49.3 3.2 23 212-234 3-25 (183)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-70 Score=609.61 Aligned_cols=522 Identities=29% Similarity=0.467 Sum_probs=419.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhcCCCccCCC
Q 039283 26 LFTRHEKLKADLIKWKGMLEMIQAVLADAEDRKTKDKAVKKWLDNLQNLAYDAEDVLDELETEALRKELLLQEPSAAYQP 105 (600)
Q Consensus 26 ~~~~~~~v~~~~~~l~~~l~~i~~~L~~ae~~~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~~~~~~~~~~~~~~~~~~ 105 (600)
++....++++.+..|++.|..++++++|+++++.....+..|.+.+++++|++||.++.|.......+....
T Consensus 19 ~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~-------- 90 (889)
T KOG4658|consen 19 ESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDL-------- 90 (889)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------
Confidence 355567788899999999999999999999998888889999999999999999999999998766543201
Q ss_pred CcccccccccccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCcccccCCCCCCccCCCCCc
Q 039283 106 STSTSKFRKIIPTCCTNFSPRSIQFESKMVSQIEDVTARLQSIISTQKDLLTMKNVISDGKSRINVGQRLPTTSLVNEDE 185 (600)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (600)
........+.+ |. ..++++++..+..+.+++..+ ....+.++.............+....++.|..+...
T Consensus 91 l~~~~~~~~~~---c~------~~~~~~~~~~~~~~~~rv~~~-l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 160 (889)
T KOG4658|consen 91 LSTRSVERQRL---CL------CGFCSKNVSDSYKYGKRVSKV-LREVESLGSKGVFEVVGESLDPREKVETRPIQSESD 160 (889)
T ss_pred hhhhHHHHHHH---hh------hhhHhHhhhhhHhHHHHHHHH-HHHHHHhccccceecccccccchhhcccCCCCcccc
Confidence 00000011111 10 124566777777777777776 555555554432211111111222233444444445
Q ss_pred cccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhh-hhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 186 VYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDR-VQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
||.+..++++.+.|..++ ..+++|+||||+||||||++++|+.. ++.+|+.++||+||+.++...+..+|+.
T Consensus 161 -VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~ 233 (889)
T KOG4658|consen 161 -VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILE 233 (889)
T ss_pred -ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHH
Confidence 999999999999998764 28999999999999999999999987 9999999999999999999999999999
Q ss_pred HhhcCCCC-CcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHHhh-cCccce
Q 039283 265 SIASDQCT-DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVAET-MRAVST 342 (600)
Q Consensus 265 ~l~~~~~~-~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~-~~~~~~ 342 (600)
.++..... .....++++..+.+.|++|||||||||||+. ..|+.+..++|....||+|++|||+..|+.. ++....
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~ 311 (889)
T KOG4658|consen 234 RLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYP 311 (889)
T ss_pred HhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCcc
Confidence 99875432 2333478899999999999999999999997 4699999999999889999999999999998 777889
Q ss_pred eecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCCChhHHHHHHHhcccccc---
Q 039283 343 KTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEIVLNANIWDLQ--- 419 (600)
Q Consensus 343 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~--- 419 (600)
+++..|+++|||.||++.++.... ...+.++++|++++++|+|+|||++++|++|+.+.+..+|+.+.+...+...
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~ 390 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADF 390 (889)
T ss_pred ccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCC
Confidence 999999999999999999987533 3344589999999999999999999999999999999999999987765522
Q ss_pred -CCCccchHHHHHhhhCCChhHHHHHHHhccCCCCCcccHHHHHHHHHHcCCcccccCCccHHHHHHHHHHHHhhCCCcc
Q 039283 420 -EDKCDIIPALRVSYHFLPPQLKQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQEYNGRKMEDLGRQFVRELHSRSLFQ 498 (600)
Q Consensus 420 -~~~~~i~~~l~~sy~~L~~~~k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~rsLl~ 498 (600)
+..+.+.++|.+||+.||++.|.||+|||+||+||.|+++.|+.+|+||||+.+..++.+++++|+.|+++|++++|++
T Consensus 391 ~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~ 470 (889)
T KOG4658|consen 391 SGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLI 470 (889)
T ss_pred CchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHh
Confidence 2346799999999999999999999999999999999999999999999999986778899999999999999999998
Q ss_pred cccC--CCCeEEEchHHHHHHHHHhc-----cccEEEecC--CcccccccCCCCeeEEEEEeCCCCCCcccccccCCCce
Q 039283 499 LSSK--DTSRFVMHDLINDLARWAAG-----ELYFRVEDT--LAGENQQKFSQSLRHFSYIRGRYDGDTRFEFICDVQHL 569 (600)
Q Consensus 499 ~~~~--~~~~~~mH~lv~~~a~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~lsi~~~~~~~~~~~~~~~~~~~l 569 (600)
.... ....|.|||+|||+|.++|+ ++++++.++ +...+....+..+||+|++++... ......++++|
T Consensus 471 ~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~---~~~~~~~~~~L 547 (889)
T KOG4658|consen 471 EERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIE---HIAGSSENPKL 547 (889)
T ss_pred hcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchh---hccCCCCCCcc
Confidence 7652 45789999999999999999 666665543 111222335678999999987432 22334577899
Q ss_pred eEEEecCCC
Q 039283 570 RTFLPVKLS 578 (600)
Q Consensus 570 rtl~~~~~~ 578 (600)
|||+++++.
T Consensus 548 ~tLll~~n~ 556 (889)
T KOG4658|consen 548 RTLLLQRNS 556 (889)
T ss_pred ceEEEeecc
Confidence 999999975
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1e-44 Score=366.18 Aligned_cols=278 Identities=36% Similarity=0.645 Sum_probs=226.5
Q ss_pred ccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhc
Q 039283 189 REKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIAS 268 (600)
Q Consensus 189 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~ 268 (600)
||.++++|.++|.... ++.++|+|+||||+||||||..++++..+..+|+.++|++++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998743 578999999999999999999999987788999999999999999999999999999988
Q ss_pred CCCC--CcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHHhhcCc-cceeec
Q 039283 269 DQCT--DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVAETMRA-VSTKTL 345 (600)
Q Consensus 269 ~~~~--~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~~-~~~~~l 345 (600)
.... ...+.+.....+.+.|+++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7432 4567788999999999999999999999765 5888888888777789999999999988876654 678999
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCCChhHHHHHHHhccccccC---CC
Q 039283 346 KELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEIVLNANIWDLQE---DK 422 (600)
Q Consensus 346 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~---~~ 422 (600)
.+|+.++|++||.+.++... ...++.+.+.+++|+++|+|+||||+++|++|+.+.+..+|..+++........ ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 122344557899999999999999999999997766778999998775555432 34
Q ss_pred ccchHHHHHhhhCCChhHHHHHHHhccCCCCCcccHHHHHHHHHHcCCccc
Q 039283 423 CDIIPALRVSYHFLPPQLKQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQ 473 (600)
Q Consensus 423 ~~i~~~l~~sy~~L~~~~k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~ 473 (600)
.++..++.+||+.||++.|.||+|||+||+++.|+++.|+++|+++||+..
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 679999999999999999999999999999999999999999999999975
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-38 Score=373.09 Aligned_cols=405 Identities=20% Similarity=0.236 Sum_probs=283.5
Q ss_pred HHHHHHHHHHHHHHHhcccccccccccCCC----CcccccCCCCCCccCCCCCccccccchHHHHHHHHhcCCCCCCCCc
Q 039283 136 SQIEDVTARLQSIISTQKDLLTMKNVISDG----KSRINVGQRLPTTSLVNEDEVYGREKDKEAIVELLLRDDLRADDGF 211 (600)
Q Consensus 136 ~~i~~~~~~l~~i~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~ 211 (600)
.+++++++.+.++ .+..+.. +......+ ............++..+.+.+|||+.++++|..+|.-. .+++
T Consensus 134 ~~~~~w~~al~~~-~~~~g~~-~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----~~~~ 207 (1153)
T PLN03210 134 DEKIQWKQALTDV-ANILGYH-SQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----SEEV 207 (1153)
T ss_pred hHHHHHHHHHHHH-hCcCcee-cCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----cCce
Confidence 4677788888887 5543321 11100000 00111112223334445667999999999999988533 3578
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEe---CCC-----------CC-HHHHHHHHHHHhhcCCCCCccc
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCV---SED-----------FD-VFTVSKSILNSIASDQCTDKDD 276 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s~~-----------~~-~~~~l~~il~~l~~~~~~~~~~ 276 (600)
++|+|+||||+||||||+.+|+ ++..+|+..+|+.. +.. ++ ...+...++..+..........
T Consensus 208 ~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~ 285 (1153)
T PLN03210 208 RMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH 285 (1153)
T ss_pred EEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC
Confidence 9999999999999999999998 56678988888742 111 01 1234445555544332211111
Q ss_pred HHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHHhhcCccceeecCCCCHHHHHHH
Q 039283 277 LNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVAETMRAVSTKTLKELSDDDCLRV 356 (600)
Q Consensus 277 ~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L~~~ea~~L 356 (600)
...+++.++++|+||||||||+. ..|+.+.......++|++||||||+..++..++..+.|+++.|+.++|++|
T Consensus 286 ----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~L 359 (1153)
T PLN03210 286 ----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEM 359 (1153)
T ss_pred ----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHH
Confidence 14567788999999999999764 578888766666678999999999999988776678999999999999999
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCCChhHHHHHHHhccccccCCCccchHHHHHhhhCC
Q 039283 357 LIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEIVLNANIWDLQEDKCDIIPALRVSYHFL 436 (600)
Q Consensus 357 f~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L 436 (600)
|+++||+... .++.+.+++++|+++|+|+||||+++|+.|+.+ +..+|+.++++..... ...+..+|++||+.|
T Consensus 360 F~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~---~~~I~~~L~~SYd~L 433 (1153)
T PLN03210 360 FCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGL---DGKIEKTLRVSYDGL 433 (1153)
T ss_pred HHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCc---cHHHHHHHHHhhhcc
Confidence 9999997642 345688999999999999999999999999987 6789999998865433 346999999999999
Q ss_pred Ch-hHHHHHHHhccCCCCCcccHHHHHHHHHHcCCcccccCCccHHHHHHHHHHHHhhCCCcccccCCCCeEEEchHHHH
Q 039283 437 PP-QLKQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQEYNGRKMEDLGRQFVRELHSRSLFQLSSKDTSRFVMHDLIND 515 (600)
Q Consensus 437 ~~-~~k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~rsLl~~~~~~~~~~~mH~lv~~ 515 (600)
++ ..|.||+++|+|+.+..++ .+..|++.+... ++..++.|+++||++.. ...+.|||++|+
T Consensus 434 ~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~-----------~~~~l~~L~~ksLi~~~---~~~~~MHdLl~~ 496 (1153)
T PLN03210 434 NNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLD-----------VNIGLKNLVDKSLIHVR---EDIVEMHSLLQE 496 (1153)
T ss_pred CccchhhhhheehhhcCCCCHH---HHHHHHHhcCCC-----------chhChHHHHhcCCEEEc---CCeEEhhhHHHH
Confidence 87 5999999999999987554 367788876443 22248999999999865 357999999999
Q ss_pred HHHHHhcccc-------EEEecC-Cccc-ccccCCCCeeEEEEEeCCCCCCcc-cccccCCCceeEEEecCC
Q 039283 516 LARWAAGELY-------FRVEDT-LAGE-NQQKFSQSLRHFSYIRGRYDGDTR-FEFICDVQHLRTFLPVKL 577 (600)
Q Consensus 516 ~a~~~~~~~~-------~~~~~~-~~~~-~~~~~~~~~r~lsi~~~~~~~~~~-~~~~~~~~~lrtl~~~~~ 577 (600)
+|+.++.++. +.+... ...- ....-..+++++++..+....... ......+++||.|-++..
T Consensus 497 ~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~ 568 (1153)
T PLN03210 497 MGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTK 568 (1153)
T ss_pred HHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecc
Confidence 9999987653 221110 0000 001134568888876543221110 112346778888777543
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.68 E-value=4e-15 Score=174.19 Aligned_cols=294 Identities=15% Similarity=0.137 Sum_probs=185.4
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeC-CCCCHHHHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVS-EDFDVFTVSKS 261 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~l~~ 261 (600)
.+.++-|..-.+ .|... ...+++.|+|++|.||||++..+.. .++.++|+++. .+.++..+...
T Consensus 13 ~~~~~~R~rl~~----~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~------~~~~~~w~~l~~~d~~~~~f~~~ 77 (903)
T PRK04841 13 LHNTVVRERLLA----KLSGA-----NNYRLVLVTSPAGYGKTTLISQWAA------GKNNLGWYSLDESDNQPERFASY 77 (903)
T ss_pred ccccCcchHHHH----HHhcc-----cCCCeEEEECCCCCCHHHHHHHHHH------hCCCeEEEecCcccCCHHHHHHH
Confidence 345677775444 44221 3568999999999999999988764 23368899996 44566777778
Q ss_pred HHHHhhcCCCC------------CcccHHHHHHHHHHHhC--CCcEEEEEecCCCCChhhHHhhcCCC-CCCCCCcEEEE
Q 039283 262 ILNSIASDQCT------------DKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNENYNSWRALSCPF-GAGASGSKIVV 326 (600)
Q Consensus 262 il~~l~~~~~~------------~~~~~~~l~~~l~~~L~--~k~~LlVlDdv~~~~~~~~~~l~~~l-~~~~~gs~Ilv 326 (600)
++..+...... ...+...+...+...+. +.+++|||||++..+......+...+ .....+.++||
T Consensus 78 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~ 157 (903)
T PRK04841 78 LIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVV 157 (903)
T ss_pred HHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEE
Confidence 88777522111 01222333333333332 68999999999876544444333333 33345678989
Q ss_pred eccChHHHhh---cCccceeecC----CCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhc
Q 039283 327 THRNQGVAET---MRAVSTKTLK----ELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLR 399 (600)
Q Consensus 327 TtR~~~v~~~---~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~ 399 (600)
|||....... ........+. +|+.+|+.++|....... . ..+.+.+|++.|+|+|+++..++..+.
T Consensus 158 ~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~----~---~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 158 LSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP----I---EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC----C---CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 9998422111 0112234455 999999999997654221 1 125678899999999999999987775
Q ss_pred CCCChhHHHHHHHhccccccC-CCccchHHHHH-hhhCCChhHHHHHHHhccCCCCCcccHHHHHHHHHHcCCcccccCC
Q 039283 400 GKDDLNDWEIVLNANIWDLQE-DKCDIIPALRV-SYHFLPPQLKQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQEYNG 477 (600)
Q Consensus 400 ~~~~~~~w~~~l~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~ 477 (600)
..+.... ... +.+.. ....+...+.- .++.||++.+..+..+|+++ .|+.+.+-. +..
T Consensus 231 ~~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~~------l~~----- 290 (903)
T PRK04841 231 QNNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIVR------VTG----- 290 (903)
T ss_pred hCCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHHH------HcC-----
Confidence 5432100 001 11111 12235555444 48999999999999999996 334332221 111
Q ss_pred ccHHHHHHHHHHHHhhCCCccc-ccCCCCeEEEchHHHHHHHHHh
Q 039283 478 RKMEDLGRQFVRELHSRSLFQL-SSKDTSRFVMHDLINDLARWAA 521 (600)
Q Consensus 478 ~~~e~~~~~~l~~L~~rsLl~~-~~~~~~~~~mH~lv~~~a~~~~ 521 (600)
.+.+...+++|.+.++|.. .+.+..+|+.|++++++++...
T Consensus 291 ---~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 ---EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1225678999999999753 3324468999999999998775
No 5
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.54 E-value=3.6e-12 Score=134.62 Aligned_cols=304 Identities=13% Similarity=0.046 Sum_probs=179.7
Q ss_pred CCCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 181 VNEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 181 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
..++.++||++++++|...|...- .......+.|+|++|+|||++++.++++.......-..+++++....+...++.
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~--~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPAL--RGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHh--CCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 345679999999999999985432 123445688999999999999999998654333223456777777778889999
Q ss_pred HHHHHhhcC-CCCCcccHHHHHHHHHHHhC--CCcEEEEEecCCCCC----hhhHHhhcCCCCCCC-CCcEEEEeccChH
Q 039283 261 SILNSIASD-QCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNEN----YNSWRALSCPFGAGA-SGSKIVVTHRNQG 332 (600)
Q Consensus 261 ~il~~l~~~-~~~~~~~~~~l~~~l~~~L~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~~~-~gs~IlvTtR~~~ 332 (600)
.++.++... .+....+.+++...+.+.+. +++.+||||+++... ...+..+...+.... .+..+|.++....
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcc
Confidence 999998762 22233456666777777765 467899999996532 223333333222211 1233555555443
Q ss_pred HHhhcC-------ccceeecCCCCHHHHHHHHHHhhcCCC--CCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh--c--
Q 039283 333 VAETMR-------AVSTKTLKELSDDDCLRVLIQHSLGAR--DFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL--R-- 399 (600)
Q Consensus 333 v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L--~-- 399 (600)
+..... ....+.+.+++.++..+++..++.... ....+..++.+++......|..+.|+.++-.+. +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 322211 224678999999999999988763221 111222233333333333455777777765432 1
Q ss_pred CC---CChhHHHHHHHhccccccCCCccchHHHHHhhhCCChhHHHHHHHhccCCC--CCcccHHHHHHH--HHHcCCcc
Q 039283 400 GK---DDLNDWEIVLNANIWDLQEDKCDIIPALRVSYHFLPPQLKQCFAYISLFPK--DYEFEEEQIILL--WTAEGFLD 472 (600)
Q Consensus 400 ~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~ls~fp~--~~~i~~~~Li~~--Wiaeg~i~ 472 (600)
.+ -+.+....+.+.. -...+.-.+..||.+.|..+..++..-+ ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 1344554444432 1223455688999998888776653321 123454444432 22221111
Q ss_pred cccCCccHHHHHHHHHHHHhhCCCcccc
Q 039283 473 QEYNGRKMEDLGRQFVRELHSRSLFQLS 500 (600)
Q Consensus 473 ~~~~~~~~e~~~~~~l~~L~~rsLl~~~ 500 (600)
. .........|++.|...|+|...
T Consensus 335 ~----~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 E----PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred C----cCcHHHHHHHHHHHHhcCCeEEE
Confidence 0 11124456799999999999754
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.52 E-value=1.1e-12 Score=141.20 Aligned_cols=299 Identities=18% Similarity=0.209 Sum_probs=195.9
Q ss_pred CCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC-CCHHHHHH
Q 039283 182 NEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED-FDVFTVSK 260 (600)
Q Consensus 182 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~l~ 260 (600)
.+.+.+-|.. |.+.|... .+.+.+.|..|+|.|||||+.+... ....-..+.|+++.+. .++..++.
T Consensus 17 ~~~~~v~R~r----L~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~---~~~~~~~v~Wlslde~dndp~rF~~ 84 (894)
T COG2909 17 RPDNYVVRPR----LLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE---LAADGAAVAWLSLDESDNDPARFLS 84 (894)
T ss_pred CcccccccHH----HHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH---hcCcccceeEeecCCccCCHHHHHH
Confidence 3455666665 55555433 4679999999999999999988764 2233456889998654 57888888
Q ss_pred HHHHHhhcCCCC------------CcccHHHHHHHHHHHhC--CCcEEEEEecCCCCChhhHHh-hcCCCCCCCCCcEEE
Q 039283 261 SILNSIASDQCT------------DKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNENYNSWRA-LSCPFGAGASGSKIV 325 (600)
Q Consensus 261 ~il~~l~~~~~~------------~~~~~~~l~~~l~~~L~--~k~~LlVlDdv~~~~~~~~~~-l~~~l~~~~~gs~Il 325 (600)
.++..++.-.+. ...+...+...+...+. .++..+||||.+-........ +...+....++..+|
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lv 164 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLV 164 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEE
Confidence 888888744332 22334445555555444 478999999986433223332 333334455688999
Q ss_pred EeccChHHHhhcC---ccceeec----CCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh
Q 039283 326 VTHRNQGVAETMR---AVSTKTL----KELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 398 (600)
Q Consensus 326 vTtR~~~v~~~~~---~~~~~~l----~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L 398 (600)
+|||+..-..... ....+++ -.|+.+|+-++|...... +-.+..++.+++..+|.+-|+..++-.+
T Consensus 165 v~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------~Ld~~~~~~L~~~teGW~~al~L~aLa~ 237 (894)
T COG2909 165 VTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------PLDAADLKALYDRTEGWAAALQLIALAL 237 (894)
T ss_pred EEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC-------CCChHHHHHHHhhcccHHHHHHHHHHHc
Confidence 9999874322111 1122222 348999999999776421 1223568899999999999999999888
Q ss_pred cCCCChhHHHHHHHhccccccCCCccchHH-HHHhhhCCChhHHHHHHHhccCCCCCcccHHHHHHHHHHcCCcccccCC
Q 039283 399 RGKDDLNDWEIVLNANIWDLQEDKCDIIPA-LRVSYHFLPPQLKQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQEYNG 477 (600)
Q Consensus 399 ~~~~~~~~w~~~l~~~~~~~~~~~~~i~~~-l~~sy~~L~~~~k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~ 477 (600)
+.+.+.+.-...+ .+....+... ..-.++.||+++|..+.-||+++.- ...|+..-
T Consensus 238 ~~~~~~~q~~~~L-------sG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L------------ 294 (894)
T COG2909 238 RNNTSAEQSLRGL-------SGAASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL------------ 294 (894)
T ss_pred cCCCcHHHHhhhc-------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH------------
Confidence 8443332221111 1111223332 3457899999999999999999552 22233221
Q ss_pred ccHHHHHHHHHHHHhhCCCcc-cccCCCCeEEEchHHHHHHHHHhcc
Q 039283 478 RKMEDLGRQFVRELHSRSLFQ-LSSKDTSRFVMHDLINDLARWAAGE 523 (600)
Q Consensus 478 ~~~e~~~~~~l~~L~~rsLl~-~~~~~~~~~~mH~lv~~~a~~~~~~ 523 (600)
+-++.+...+++|.+++||- +-+....+|+.|+++.||.+.....
T Consensus 295 -tg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 295 -TGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred -hcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 12344777899999999975 3444678999999999999877654
No 7
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.46 E-value=5.6e-11 Score=124.25 Aligned_cols=303 Identities=15% Similarity=0.104 Sum_probs=176.7
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhh-ccC---CceEEEEeCCCCCHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ-RHF---QIKAWTCVSEDFDVFTV 258 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~-~~F---~~~~wv~vs~~~~~~~~ 258 (600)
++.++||+.++++|..+|...- .+.....+.|+|++|+|||++++.+++..... ... -..+|+++....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~--~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPIL--RGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 3479999999999999986421 12344678999999999999999998754211 111 13567888777788899
Q ss_pred HHHHHHHhh---cCCCCCcccHHHHHHHHHHHhC--CCcEEEEEecCCCCC---hhhHHhhcCC--CCCC-CCCcEEEEe
Q 039283 259 SKSILNSIA---SDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNEN---YNSWRALSCP--FGAG-ASGSKIVVT 327 (600)
Q Consensus 259 l~~il~~l~---~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVlDdv~~~~---~~~~~~l~~~--l~~~-~~gs~IlvT 327 (600)
+..|+.++. ...+....+..+....+.+.+. +++++||||+++... ......+... .... .....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999984 2222122344555555655553 568899999996541 1112233222 1111 123344555
Q ss_pred ccChHHHhhcC-------ccceeecCCCCHHHHHHHHHHhhcCC-CCCCCChhHHHHHHHHHHhhcCchhHHH-HHHhhh
Q 039283 328 HRNQGVAETMR-------AVSTKTLKELSDDDCLRVLIQHSLGA-RDFNIPQSLKEVAEKIVKKCKGLPLAAK-TLGGLL 398 (600)
Q Consensus 328 tR~~~v~~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~l~~~~~~I~~~~~GlPLai~-~~~~~L 398 (600)
+........+. ....+.+.+.+.++..+++..++... ......++..+.+..++..+.|.|--+. ++-.+.
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 54332211111 12468899999999999998876311 1112333444455667777789885443 322211
Q ss_pred ----cCC---CChhHHHHHHHhccccccCCCccchHHHHHhhhCCChhHHHHHHHhccCC--CCCcccHHHHHHHHH--H
Q 039283 399 ----RGK---DDLNDWEIVLNANIWDLQEDKCDIIPALRVSYHFLPPQLKQCFAYISLFP--KDYEFEEEQIILLWT--A 467 (600)
Q Consensus 399 ----~~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~ls~fp--~~~~i~~~~Li~~Wi--a 467 (600)
..+ -+.+....+.+.. -.....-++..||.+.+.++..+...- ++..+....+...+- +
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~ 321 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVC 321 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 111 1233333333321 122345567899999887776655321 333455555555331 2
Q ss_pred cCCcccccCCccHHHHHHHHHHHHhhCCCccccc
Q 039283 468 EGFLDQEYNGRKMEDLGRQFVRELHSRSLFQLSS 501 (600)
Q Consensus 468 eg~i~~~~~~~~~e~~~~~~l~~L~~rsLl~~~~ 501 (600)
+.+ . -.+........++..|...||+....
T Consensus 322 ~~~-~---~~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 322 EDI-G---VDPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred Hhc-C---CCCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 211 1 01223466788999999999998653
No 8
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.34 E-value=1.2e-10 Score=116.25 Aligned_cols=182 Identities=20% Similarity=0.201 Sum_probs=116.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHH----HHHHHHHH
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLN----LLQEKLKK 286 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~----~l~~~l~~ 286 (600)
.+.+.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..++..++.+.. ..+.. .+.+.+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHH
Confidence 4589999999999999999998753311 11 12233 33345778888899988876532 22222 23333333
Q ss_pred H-hCCCcEEEEEecCCCCChhhHHhhcCCCC---CCCCCcEEEEeccChHHHhhcC----------ccceeecCCCCHHH
Q 039283 287 Q-LSGKKFLLVLDDVWNENYNSWRALSCPFG---AGASGSKIVVTHRNQGVAETMR----------AVSTKTLKELSDDD 352 (600)
Q Consensus 287 ~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~IlvTtR~~~v~~~~~----------~~~~~~l~~L~~~e 352 (600)
. ..+++.+||+||++..+...++.+..... .......|++|.... ....+. ....+.+.+++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 2 26788999999999877666666543221 122333556666543 211111 12467899999999
Q ss_pred HHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh
Q 039283 353 CLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 398 (600)
Q Consensus 353 a~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L 398 (600)
..+++...+..........-..+..+.|++.|+|.|..|+.++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987764322111112234788999999999999999998776
No 9
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.29 E-value=1.3e-11 Score=120.19 Aligned_cols=196 Identities=22% Similarity=0.233 Sum_probs=100.1
Q ss_pred cccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH---
Q 039283 186 VYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI--- 262 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i--- 262 (600)
|+||+.|+++|.+++..+ ..+.+.|+|+.|+|||+|++.+.+..... .+ ..+|+....... ......+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~-~~-~~~y~~~~~~~~-~~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEK-GY-KVVYIDFLEESN-ESSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT---EE-CCCHHCCTTBSH-HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhc-CC-cEEEEecccchh-hhHHHHHHHH
Confidence 799999999999999653 34789999999999999999998743211 12 334444433332 2222222
Q ss_pred -------HHHhhcCCCC---------CcccHHHHHHHHHHHhC--CCcEEEEEecCCCCC------hhhHHhhc---CCC
Q 039283 263 -------LNSIASDQCT---------DKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNEN------YNSWRALS---CPF 315 (600)
Q Consensus 263 -------l~~l~~~~~~---------~~~~~~~l~~~l~~~L~--~k~~LlVlDdv~~~~------~~~~~~l~---~~l 315 (600)
...+...... ...........+.+.+. +++++||+||+.... ......+. ..+
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 1112211100 11122222233333332 345999999995433 11112222 222
Q ss_pred CCCCCCcEEEEeccChHHHhh--------cCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCc
Q 039283 316 GAGASGSKIVVTHRNQGVAET--------MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 387 (600)
Q Consensus 316 ~~~~~gs~IlvTtR~~~v~~~--------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~Gl 387 (600)
....+.+ +|++......... .+....+.|++|+.+++++++....... ... +...+..++|+..+||+
T Consensus 152 ~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~ 227 (234)
T PF01637_consen 152 LSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGN 227 (234)
T ss_dssp ---TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-
T ss_pred cccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCC
Confidence 2233334 4455444433322 1233459999999999999998865433 111 22346679999999999
Q ss_pred hhHHHHH
Q 039283 388 PLAAKTL 394 (600)
Q Consensus 388 PLai~~~ 394 (600)
|..|..+
T Consensus 228 P~~l~~~ 234 (234)
T PF01637_consen 228 PRYLQEL 234 (234)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9988653
No 10
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.26 E-value=1.4e-10 Score=131.72 Aligned_cols=313 Identities=16% Similarity=0.202 Sum_probs=185.2
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhh-ccCCceEEEEeCCCCC---HHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ-RHFQIKAWTCVSEDFD---VFTVSK 260 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~---~~~~l~ 260 (600)
.++||+.+++.|.+.+.... .+...++.|.|.+|||||+|+++|..-..-+ ..|-...+-....+.. ....++
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~---~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVS---KGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCCchHhHHHHHHHHHHHHh---CCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHH
Confidence 37899999999999997653 3566799999999999999999998742211 2221111111222222 222333
Q ss_pred HHHHHh-------------------hcCCCC---------------------CcccHH-----HHHHHHHHHh-CCCcEE
Q 039283 261 SILNSI-------------------ASDQCT---------------------DKDDLN-----LLQEKLKKQL-SGKKFL 294 (600)
Q Consensus 261 ~il~~l-------------------~~~~~~---------------------~~~~~~-----~l~~~l~~~L-~~k~~L 294 (600)
+++.++ +..... .+.... ..+..+.... +.+|.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 333333 111000 000001 1222233333 356999
Q ss_pred EEEecCCCCChhhHHhhcCCCCCCC------CCcEEEEeccCh--HHHhhcCccceeecCCCCHHHHHHHHHHhhcCCCC
Q 039283 295 LVLDDVWNENYNSWRALSCPFGAGA------SGSKIVVTHRNQ--GVAETMRAVSTKTLKELSDDDCLRVLIQHSLGARD 366 (600)
Q Consensus 295 lVlDdv~~~~~~~~~~l~~~l~~~~------~gs~IlvTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 366 (600)
+|+||+++.|..+...+........ ...-.+.|.+.. .+.........+.|.||+..+...+.........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~- 236 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTK- 236 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcc-
Confidence 9999998888776655433322211 011122233322 2222223457899999999999999987764322
Q ss_pred CCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCC------CChhHHHHHHHhccccccCCCccchHHHHHhhhCCChhH
Q 039283 367 FNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGK------DDLNDWEIVLNANIWDLQEDKCDIIPALRVSYHFLPPQL 440 (600)
Q Consensus 367 ~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~ 440 (600)
....+....|+++..|+|+.+..+-..+..+ .+...|..-..+. ........+...+..-.+.||...
T Consensus 237 ----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i--~~~~~~~~vv~~l~~rl~kL~~~t 310 (849)
T COG3899 237 ----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL--GILATTDAVVEFLAARLQKLPGTT 310 (849)
T ss_pred ----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc--CCchhhHHHHHHHHHHHhcCCHHH
Confidence 2234678899999999999999999998775 2333443221111 111111224556888999999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHHcCCcccccCCccHHHHHHHHHHHHhhCCCcccc-----cCCCCe--E-EEchH
Q 039283 441 KQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQEYNGRKMEDLGRQFVRELHSRSLFQLS-----SKDTSR--F-VMHDL 512 (600)
Q Consensus 441 k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~rsLl~~~-----~~~~~~--~-~mH~l 512 (600)
|..+...|++.. .|+.+.|...+-. ....++...++.|....++-.. ...... | ..|++
T Consensus 311 ~~Vl~~AA~iG~--~F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~ 377 (849)
T COG3899 311 REVLKAAACIGN--RFDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDR 377 (849)
T ss_pred HHHHHHHHHhCc--cCCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHH
Confidence 999999999965 4566666665421 2355567667777766665422 111111 3 46999
Q ss_pred HHHHHHHH
Q 039283 513 INDLARWA 520 (600)
Q Consensus 513 v~~~a~~~ 520 (600)
|++.|-+.
T Consensus 378 vqqaaY~~ 385 (849)
T COG3899 378 VQQAAYNL 385 (849)
T ss_pred HHHHHhcc
Confidence 99888543
No 11
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.21 E-value=2e-10 Score=117.77 Aligned_cols=278 Identities=17% Similarity=0.149 Sum_probs=148.4
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+|+|++..++.+..++..... .......+.|+|++|+|||+||+.+++... ..+ .+++.. .......+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l~--~~~---~~~~~~-~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEMG--VNI---RITSGP-ALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHhC--CCe---EEEecc-cccChHHHHHHH
Confidence 4699999999999888854211 123456789999999999999999987432 111 122211 111122223333
Q ss_pred HHhhcCCCCCcccH----HHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHHhhc-C
Q 039283 264 NSIASDQCTDKDDL----NLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVAETM-R 338 (600)
Q Consensus 264 ~~l~~~~~~~~~~~----~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~-~ 338 (600)
..+......-.++. ....+.+...+.+.+..+++|+..+.. .+...++ +.+-|..|++...+...+ .
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecCC---CceEEeecCCcccCCHHHHH
Confidence 33221110000000 011222333444444444554432211 0001111 245566677754333221 1
Q ss_pred c-cceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCCChhHHHHHHHhcccc
Q 039283 339 A-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEIVLNANIWD 417 (600)
Q Consensus 339 ~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~ 417 (600)
. ...+.+.+++.++..+++.+.+..... ..+ .+.+..|++.|+|.|-.+..+...+. .|...... ..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~~---~~~~~~ia~~~~G~pR~a~~~l~~~~------~~a~~~~~--~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILGV-EID---EEGALEIARRSRGTPRIANRLLRRVR------DFAQVKGD--GV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcCC-CcC---HHHHHHHHHHcCCCchHHHHHHHHHH------HHHHHcCC--CC
Confidence 1 246899999999999999988754322 222 26788999999999976655554321 11111100 00
Q ss_pred cc-CCCccchHHHHHhhhCCChhHHHHHH-HhccCCCCCcccHHHHHHHHHHcCCcccccCCccHHHHHHHHHH-HHhhC
Q 039283 418 LQ-EDKCDIIPALRVSYHFLPPQLKQCFA-YISLFPKDYEFEEEQIILLWTAEGFLDQEYNGRKMEDLGRQFVR-ELHSR 494 (600)
Q Consensus 418 ~~-~~~~~i~~~l~~sy~~L~~~~k~~f~-~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~-~L~~r 494 (600)
.. ..-......+...+..|++..+..+. .+..|+.+ .+..+.+.... . ...+.+++.++ .|++.
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g------~~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G------EERDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C------CCcchHHHHhhHHHHHc
Confidence 00 00011223455667788888888775 77778766 45555554322 1 11234555666 89999
Q ss_pred CCccccc
Q 039283 495 SLFQLSS 501 (600)
Q Consensus 495 sLl~~~~ 501 (600)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9997554
No 12
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.20 E-value=7.1e-10 Score=112.84 Aligned_cols=277 Identities=15% Similarity=0.125 Sum_probs=146.7
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.|+|++..+++|..++..... .......+.|+|++|+|||+||+.+.+... ..+ ..+..+..... ..+...+.
T Consensus 5 ~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~--~~~---~~~~~~~~~~~-~~l~~~l~ 77 (305)
T TIGR00635 5 EFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEMG--VNL---KITSGPALEKP-GDLAAILT 77 (305)
T ss_pred HHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHhC--CCE---EEeccchhcCc-hhHHHHHH
Confidence 599999999999998853221 123456788999999999999999987432 111 11221111111 12222222
Q ss_pred HhhcCCCCCcccH----HHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHHhhc-C-
Q 039283 265 SIASDQCTDKDDL----NLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVAETM-R- 338 (600)
Q Consensus 265 ~l~~~~~~~~~~~----~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~-~- 338 (600)
.+......-.++. ....+.+...+.+.+..+|+++..+.. .+ ...+ .+.+-|..||+...+.... .
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDL---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecC---CCeEEEEecCCccccCHHHHhh
Confidence 2221110000000 112233444445555555555542221 11 1111 1245666777764333221 1
Q ss_pred ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCCChhHHHHHHHhccccc
Q 039283 339 AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEIVLNANIWDL 418 (600)
Q Consensus 339 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~ 418 (600)
....+.+.+++.++..+++.+.+..... ..+ .+.+..|++.|+|.|-.+..++..+. ...........
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~~---~~al~~ia~~~~G~pR~~~~ll~~~~--------~~a~~~~~~~i 217 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNV-EIE---PEAALEIARRSRGTPRIANRLLRRVR--------DFAQVRGQKII 217 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCC-CcC---HHHHHHHHHHhCCCcchHHHHHHHHH--------HHHHHcCCCCc
Confidence 1246789999999999999987753221 222 35678899999999977655554321 11000000000
Q ss_pred c-CCCccchHHHHHhhhCCChhHHHHHH-HhccCCCCCcccHHHHHHHHHHcCCcccccCCccHHHHHHHHHH-HHhhCC
Q 039283 419 Q-EDKCDIIPALRVSYHFLPPQLKQCFA-YISLFPKDYEFEEEQIILLWTAEGFLDQEYNGRKMEDLGRQFVR-ELHSRS 495 (600)
Q Consensus 419 ~-~~~~~i~~~l~~sy~~L~~~~k~~f~-~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~-~L~~rs 495 (600)
. ..-......+...|..|+.+.+..+. .+..++.+ .+..+.+.... | .....++..++ .|++.+
T Consensus 218 t~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---------~~~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 218 NRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---------EDADTIEDVYEPYLLQIG 284 (305)
T ss_pred CHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---------CCcchHHHhhhHHHHHcC
Confidence 0 00011222245567888888887776 55777544 44544443321 1 11234667788 699999
Q ss_pred Cccccc
Q 039283 496 LFQLSS 501 (600)
Q Consensus 496 Ll~~~~ 501 (600)
||....
T Consensus 285 li~~~~ 290 (305)
T TIGR00635 285 FLQRTP 290 (305)
T ss_pred CcccCC
Confidence 997543
No 13
>PF05729 NACHT: NACHT domain
Probab=99.12 E-value=4.8e-10 Score=102.98 Aligned_cols=143 Identities=17% Similarity=0.236 Sum_probs=87.9
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhcc----CCceEEEEeCCCCCHH---HHHHHHHHHhhcCCCCCcccHHHHHHHH
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRH----FQIKAWTCVSEDFDVF---TVSKSILNSIASDQCTDKDDLNLLQEKL 284 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~---~~l~~il~~l~~~~~~~~~~~~~l~~~l 284 (600)
+++.|+|.+|+||||+++.++........ +...+|++.+...... .+...+....... ...... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPES----IAPIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccc----hhhhHH---HH
Confidence 47899999999999999999886544433 3455677665443322 2333333333221 111111 12
Q ss_pred HHH-hCCCcEEEEEecCCCCChh-------hHHhhcCCC-CC-CCCCcEEEEeccChHH---HhhcCccceeecCCCCHH
Q 039283 285 KKQ-LSGKKFLLVLDDVWNENYN-------SWRALSCPF-GA-GASGSKIVVTHRNQGV---AETMRAVSTKTLKELSDD 351 (600)
Q Consensus 285 ~~~-L~~k~~LlVlDdv~~~~~~-------~~~~l~~~l-~~-~~~gs~IlvTtR~~~v---~~~~~~~~~~~l~~L~~~ 351 (600)
... ...++++||||+++..... .+..+...+ .. ..++++++||+|.... .........+.+.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 222 2578999999999653221 122322222 22 2468999999998765 333344468999999999
Q ss_pred HHHHHHHHhh
Q 039283 352 DCLRVLIQHS 361 (600)
Q Consensus 352 ea~~Lf~~~a 361 (600)
+..+++.+..
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999997653
No 14
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.06 E-value=3.1e-08 Score=108.19 Aligned_cols=303 Identities=13% Similarity=0.119 Sum_probs=166.0
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhh---ccCC--ceEEEEeCCCCCHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ---RHFQ--IKAWTCVSEDFDVFT 257 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~---~~F~--~~~wv~vs~~~~~~~ 257 (600)
++.+.||++|+++|...|...-. +.+...++.|+|++|+|||++++.|....... ...+ ..++|++..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 45789999999999998865321 12334678899999999999999998753211 1122 356788777778888
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC---CCcEEEEEecCCCCChhhHHhhcCCCC-CCCCCcEEEE--eccCh
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLS---GKKFLLVLDDVWNENYNSWRALSCPFG-AGASGSKIVV--THRNQ 331 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~---~k~~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~Ilv--TtR~~ 331 (600)
++..|..++....+............+...+. +...+||||+++......-+.+...+. ....+++|++ .|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999999855443233333344444444442 234699999996432111111211111 1113444433 33321
Q ss_pred H--------HHhhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCC-
Q 039283 332 G--------VAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKD- 402 (600)
Q Consensus 332 ~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~- 402 (600)
. +...+ ....+...|.+.++-.+++..++......-.+..++-+++.++...|-.=.||.++-.+.....
T Consensus 913 DLperLdPRLRSRL-g~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRL-AFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhcc-ccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 1 11111 1234677999999999999988754322122333444444444444445566666555543221
Q ss_pred ---ChhHHHHHHHhccccccCCCccchHHHHHhhhCCChhHHHHHHHhccCCC---CCcccHHHHHHHH--HHc--C-Cc
Q 039283 403 ---DLNDWEIVLNANIWDLQEDKCDIIPALRVSYHFLPPQLKQCFAYISLFPK---DYEFEEEQIILLW--TAE--G-FL 471 (600)
Q Consensus 403 ---~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~ls~fp~---~~~i~~~~Li~~W--iae--g-~i 471 (600)
+.+.-..+.+.. ....+.-....||.+.|..+..+...-+ ...++...+.... +++ | .+
T Consensus 992 skVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 111211221111 1112344567899998877664443212 2235544444432 233 1 11
Q ss_pred ccccCCccHHHHHHHHHHHHhhCCCccccc
Q 039283 472 DQEYNGRKMEDLGRQFVRELHSRSLFQLSS 501 (600)
Q Consensus 472 ~~~~~~~~~e~~~~~~l~~L~~rsLl~~~~ 501 (600)
. .....+ ....++.+|...|+|-..+
T Consensus 1062 G---v~plTq-RV~d~L~eL~~LGIIl~ep 1087 (1164)
T PTZ00112 1062 G---MCSNNE-LFKIMLDKLVKMGILLIRP 1087 (1164)
T ss_pred C---CCCcHH-HHHHHHHHHHhcCeEEecC
Confidence 1 111223 6778899999999987554
No 15
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.96 E-value=1.6e-08 Score=100.89 Aligned_cols=221 Identities=24% Similarity=0.263 Sum_probs=126.1
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 262 (600)
..+++|-+..+.++++ .+.+....+|||+|+||||||+.+.. .....| ..++...+-..-++.+
T Consensus 29 Q~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f-----~~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAF-----EALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCce-----EEeccccccHHHHHHH
Confidence 3456666666555554 35678899999999999999998876 233333 3333322222222222
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEE--eccChHHH---hhc
Q 039283 263 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVV--THRNQGVA---ETM 337 (600)
Q Consensus 263 l~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TtR~~~v~---~~~ 337 (600)
++.. -.....+++.+|++|.|+.-+..+.+.++..+ ..|..|+| ||.|+... ...
T Consensus 93 ~e~a-----------------~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 93 IEEA-----------------RKNRLLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred HHHH-----------------HHHHhcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHh
Confidence 2211 12233489999999999887655555544333 35666665 66666322 222
Q ss_pred CccceeecCCCCHHHHHHHHHHhhcCCCC-CC-CCh-hHHHHHHHHHHhhcCchhHHHHHHhhh---cCCC---ChhHHH
Q 039283 338 RAVSTKTLKELSDDDCLRVLIQHSLGARD-FN-IPQ-SLKEVAEKIVKKCKGLPLAAKTLGGLL---RGKD---DLNDWE 408 (600)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~-~~~-~l~~~~~~I~~~~~GlPLai~~~~~~L---~~~~---~~~~w~ 408 (600)
+...++.+++|+.++-..++.+.+..... .. ... -.++....|+..++|---++-....+. .... ..+..+
T Consensus 153 SR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~ 232 (436)
T COG2256 153 SRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLE 232 (436)
T ss_pred hhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHH
Confidence 45579999999999999999884432211 11 111 123567788889988875543333332 2221 234455
Q ss_pred HHHHhccccccCCC---ccchHHHHHhhhCCChh
Q 039283 409 IVLNANIWDLQEDK---CDIIPALRVSYHFLPPQ 439 (600)
Q Consensus 409 ~~l~~~~~~~~~~~---~~i~~~l~~sy~~L~~~ 439 (600)
..+........... -++..+|.-|...=+++
T Consensus 233 ~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~d 266 (436)
T COG2256 233 EILQRRSARFDKDGDAHYDLISALHKSVRGSDPD 266 (436)
T ss_pred HHHhhhhhccCCCcchHHHHHHHHHHhhccCCcC
Confidence 55544333332222 34556666666655443
No 16
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.89 E-value=1.5e-07 Score=99.69 Aligned_cols=178 Identities=19% Similarity=0.245 Sum_probs=107.1
Q ss_pred ccccccchHHH---HHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHH
Q 039283 185 EVYGREKDKEA---IVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 185 ~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 261 (600)
.++|++..+.. |..++.. +....+.|+|++|+||||||+.+++.. ... |+.++....-..-++.
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~~--~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGAT--DAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----EEEEecccccHHHHHH
Confidence 48888877655 7777743 345678899999999999999998732 222 2322221111111122
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEE--eccChHHH---h
Q 039283 262 ILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVV--THRNQGVA---E 335 (600)
Q Consensus 262 il~~l~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TtR~~~v~---~ 335 (600)
++. ..... ..+++.+|++|+++..+....+.+...+.. |..+++ ||.+.... .
T Consensus 80 ii~------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~a 138 (413)
T PRK13342 80 VIE------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPA 138 (413)
T ss_pred HHH------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHH
Confidence 221 11111 245788999999988766666666655543 344444 44443211 1
Q ss_pred hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhh
Q 039283 336 TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGL 397 (600)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~ 397 (600)
.......+.+.+++.++...++.+....... ...+-..+....|++.|+|.|..+..+...
T Consensus 139 L~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2233468999999999999999876532111 000122466788999999999876555443
No 17
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=1.9e-07 Score=101.60 Aligned_cols=198 Identities=14% Similarity=0.170 Sum_probs=118.1
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.......+. +..+..-.....|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 358999999999999985432 245668999999999999988876432111110 00001001111111
Q ss_pred HH-----hhcCCCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH-H
Q 039283 264 NS-----IASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG-V 333 (600)
Q Consensus 264 ~~-----l~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v 333 (600)
.. +..... .....++..+.+... ..++.-++|||+++..+...++.++..+.....++++|+||.+.. +
T Consensus 84 ~G~h~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 84 EGRFVDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred cCCCceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 10 000000 111122222222211 124556899999998887888888887766666788888777653 2
Q ss_pred H-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch-hHHHHHHhhh
Q 039283 334 A-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP-LAAKTLGGLL 398 (600)
Q Consensus 334 ~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP-Lai~~~~~~L 398 (600)
. ...+....+.+..++.++..+.+.+....... .. ..+....|++.++|.. -++.++-..+
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI-~i---d~eAL~lIA~~A~GsmRdALsLLdQAi 225 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI-AF---EPQALRLLARAAQGSMRDALSLTDQAI 225 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 22234578999999999999999876543221 11 2366788999998866 4666544433
No 18
>PRK06893 DNA replication initiation factor; Validated
Probab=98.81 E-value=7.3e-08 Score=93.38 Aligned_cols=156 Identities=18% Similarity=0.176 Sum_probs=95.0
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
.+.+.|+|++|+|||+|++.+++.. ......+.|+++.... .... .+.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~y~~~~~~~---~~~~----------------------~~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHY--LLNQRTAIYIPLSKSQ---YFSP----------------------AVLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCeEEeeHHHhh---hhhH----------------------HHHhhcc-
Confidence 3578999999999999999999853 2233455666653110 0000 1111111
Q ss_pred CcEEEEEecCCCCC-hhhHHh-hcCCCCCC-CCCcEE-EEeccC---------hHHHhhcCccceeecCCCCHHHHHHHH
Q 039283 291 KKFLLVLDDVWNEN-YNSWRA-LSCPFGAG-ASGSKI-VVTHRN---------QGVAETMRAVSTKTLKELSDDDCLRVL 357 (600)
Q Consensus 291 k~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~I-lvTtR~---------~~v~~~~~~~~~~~l~~L~~~ea~~Lf 357 (600)
+.-+|||||+|... ...|.. +...+... ..|..+ |+|+.. +.+...+.....+++.+++.++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23489999998642 234543 22223221 134555 455544 244444445568899999999999999
Q ss_pred HHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh
Q 039283 358 IQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 398 (600)
Q Consensus 358 ~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L 398 (600)
.+.+....- ..+ ++...-|++.+.|..-.+..+-..|
T Consensus 171 ~~~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRGI-ELS---DEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcCC-CCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 988864321 222 3677889999998887776555444
No 19
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.79 E-value=1.6e-08 Score=89.03 Aligned_cols=118 Identities=18% Similarity=0.203 Sum_probs=81.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhc---cCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQR---HFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKK 286 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~ 286 (600)
+.+++.|+|++|+|||++++.+........ .-...+|+++....+...+...++..++.... ...+...+.+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHH
Confidence 346899999999999999999987532211 13456699988888999999999999998765 34566667777877
Q ss_pred HhCCCc-EEEEEecCCCC-ChhhHHhhcCCCCCCCCCcEEEEeccC
Q 039283 287 QLSGKK-FLLVLDDVWNE-NYNSWRALSCPFGAGASGSKIVVTHRN 330 (600)
Q Consensus 287 ~L~~k~-~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTtR~ 330 (600)
.+...+ .+||+|+++.. +...++.+..... ..+.++|+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 776554 59999999665 5455555544434 567778877665
No 20
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.78 E-value=2e-08 Score=94.01 Aligned_cols=51 Identities=24% Similarity=0.295 Sum_probs=34.3
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhh
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ 238 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~ 238 (600)
.|+||+.++++|...|... ..+..+.+.|+|++|+|||+|.+.++......
T Consensus 1 ~fvgR~~e~~~l~~~l~~~---~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAA---QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGT---SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH---HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4899999999999999522 34567899999999999999999988755444
No 21
>PTZ00202 tuzin; Provisional
Probab=98.78 E-value=7e-07 Score=91.00 Aligned_cols=169 Identities=14% Similarity=0.191 Sum_probs=102.1
Q ss_pred CCCCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHH
Q 039283 180 LVNEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVS 259 (600)
Q Consensus 180 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l 259 (600)
+.+...|+||+.++..|...|...+. ...+++.|+|++|+|||||++.+..... +. ...++.. +..+++
T Consensus 258 Pa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNpr---g~eElL 326 (550)
T PTZ00202 258 PAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVR---GTEDTL 326 (550)
T ss_pred CCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCC---CHHHHH
Confidence 34556799999999999999965432 3456999999999999999988875322 21 2233333 679999
Q ss_pred HHHHHHhhcCCCCC-cccHHHHHHHHHHHh-C-CCcEEEEEecCCCCC-hhhHHhhcCCCCCCCCCcEEEEeccChHHHh
Q 039283 260 KSILNSIASDQCTD-KDDLNLLQEKLKKQL-S-GKKFLLVLDDVWNEN-YNSWRALSCPFGAGASGSKIVVTHRNQGVAE 335 (600)
Q Consensus 260 ~~il~~l~~~~~~~-~~~~~~l~~~l~~~L-~-~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~ 335 (600)
..++.+|+.+.... ..-.+.+.+.+.+.- . +++.+||+-=-...+ ...+.+.. .|.....-|+|++---.+.+..
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcch
Confidence 99999999743211 122334444444332 2 677777764221111 11222221 2233334567776544332221
Q ss_pred h---cCccceeecCCCCHHHHHHHHHHh
Q 039283 336 T---MRAVSTKTLKELSDDDCLRVLIQH 360 (600)
Q Consensus 336 ~---~~~~~~~~l~~L~~~ea~~Lf~~~ 360 (600)
. ......|.+++++.++|.++-.+.
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhc
Confidence 1 123357889999999998877554
No 22
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=3.2e-07 Score=95.33 Aligned_cols=193 Identities=18% Similarity=0.187 Sum_probs=111.1
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+++|.+.-++.|.+.+..+. -...+.++|++|+||||+|+.+.+......... ..+...-.....+.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~-------~~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGIT-------SNPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCCCHHHHHHh
Confidence 358999999999999885432 345678999999999999999876432111000 00000000111111
Q ss_pred HHhhcC----CCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH
Q 039283 264 NSIASD----QCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA 334 (600)
Q Consensus 264 ~~l~~~----~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~ 334 (600)
...... ........++..+.+... ..+++-++|+|+++..+...++.++..+......+++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 100000 000001122211111111 12455699999998877667777777776655667777766543 232
Q ss_pred hh-cCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHH
Q 039283 335 ET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 392 (600)
Q Consensus 335 ~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~ 392 (600)
.. .+....+++.+++.++..+.+.+.+...+. .. ..+.+..|++.++|.|--+.
T Consensus 164 ~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~-~i---~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 164 KTILSRCLQFKLKIISEEKIFNFLKYILIKESI-DT---DEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred HHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 22 223468999999999999888776533221 11 22567789999999886443
No 23
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.74 E-value=2.3e-07 Score=95.91 Aligned_cols=201 Identities=13% Similarity=0.113 Sum_probs=110.2
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCC-ceEEEEeCCCCCH-HHHHH-
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ-IKAWTCVSEDFDV-FTVSK- 260 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~-~~~l~- 260 (600)
..++|++..++.|.+++..+ ..+.+.|+|++|+||||+|+.+.+... ...+. ..+.+++++..+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 45899999999999988543 345688999999999999999876432 11222 2234443321100 00000
Q ss_pred --HHHHHhhcCCCCCcccHHHHHHHHHHH---h--CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH-
Q 039283 261 --SILNSIASDQCTDKDDLNLLQEKLKKQ---L--SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG- 332 (600)
Q Consensus 261 --~il~~l~~~~~~~~~~~~~l~~~l~~~---L--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~- 332 (600)
.....++..........+.....+... . .+.+-+||+||+..........+...+......+++|+|+.+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000000001112222222221 1 13445899999976654445555544443344567777775432
Q ss_pred HHh-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 333 VAE-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 333 v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
+.. .......+.+.+++.++...++.+.+...+. ..+ .+.+..|++.++|.+-.+....
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~al~~l~~~~~gdlr~l~~~l 227 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV-DYD---DDGLELIAYYAGGDLRKAILTL 227 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 211 1123457889999999999988876543221 122 3677888899999876654433
No 24
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=3.1e-07 Score=93.60 Aligned_cols=178 Identities=15% Similarity=0.195 Sum_probs=116.8
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhh----hhhccCCceEEEEe-CCCCCHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDD----RVQRHFQIKAWTCV-SEDFDVFTVS 259 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~----~~~~~F~~~~wv~v-s~~~~~~~~l 259 (600)
+++|.+.-++.|.+++..+ .-.....++|+.|+||||+|+.++... ....|.+...|... +......+ +
T Consensus 5 ~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~-i 78 (313)
T PRK05564 5 TIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD-I 78 (313)
T ss_pred hccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-H
Confidence 5789888899999998543 234577899999999999999887642 12234454444331 22222222 2
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHH--hhc
Q 039283 260 KSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVA--ETM 337 (600)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~--~~~ 337 (600)
+++.+.+... -..+++=++|+|+++..+...++.++..+.....++.+|++|.+.... +..
T Consensus 79 r~~~~~~~~~-----------------p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 79 RNIIEEVNKK-----------------PYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHhcC-----------------cccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 2233322211 112456688888888788788999999998877889999888765322 112
Q ss_pred CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHH
Q 039283 338 RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 393 (600)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~ 393 (600)
.....+.+.+++.++....+.+...+ .+ .+.+..++..++|.|.-+..
T Consensus 142 SRc~~~~~~~~~~~~~~~~l~~~~~~-----~~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 SRCQIYKLNRLSKEEIEKFISYKYND-----IK---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hhceeeeCCCcCHHHHHHHHHHHhcC-----CC---HHHHHHHHHHcCCCHHHHHH
Confidence 34478999999999998887655311 11 14467788999999875543
No 25
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.73 E-value=2.7e-07 Score=89.53 Aligned_cols=172 Identities=19% Similarity=0.185 Sum_probs=100.1
Q ss_pred ccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhc
Q 039283 189 REKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIAS 268 (600)
Q Consensus 189 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~ 268 (600)
.+..++.+.+++.. .....+.|+|++|+|||+||+.+++... ......++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~--~~~~~~~~i~~~~~~~------~~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAE--ERGKSAIYLPLAELAQ------AD------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCcEEEEeHHHHHH------hH------
Confidence 34466777777532 2456899999999999999999987432 2233445555432210 00
Q ss_pred CCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChh-hH-HhhcCCCCC-CCCCcEEEEeccChHH---------Hhh
Q 039283 269 DQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN-SW-RALSCPFGA-GASGSKIVVTHRNQGV---------AET 336 (600)
Q Consensus 269 ~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~IlvTtR~~~v---------~~~ 336 (600)
. .+...+.+ .-+|||||++..... .| ..+...+.. ...+..+|+||+.... ...
T Consensus 82 ---------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 0 01111222 238999999754322 22 233332221 1233478888875321 112
Q ss_pred cCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh
Q 039283 337 MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 398 (600)
Q Consensus 337 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L 398 (600)
+.....+.+.+++.++...++...+.... ...+ .+..+.|++.+.|+|..+..+...+
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~---~~~l~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARRG-LQLP---DEVADYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 22235789999999999999887543221 1222 2566778888999998887765443
No 26
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=2.3e-07 Score=103.00 Aligned_cols=194 Identities=18% Similarity=0.175 Sum_probs=114.9
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|.+.-++.|.+++..+. -...+.++|+.|+||||+|+.+++........... .+..+ .....+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---pCg~C----~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---PCGVC----SSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---CCCCc----hHHHHHh
Confidence 358999999999999985432 23456899999999999999988743211110000 00000 0000111
Q ss_pred HH-------hhcCCCCCcccHHHHHHHHHH-HhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccC-hHHH
Q 039283 264 NS-------IASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRN-QGVA 334 (600)
Q Consensus 264 ~~-------l~~~~~~~~~~~~~l~~~l~~-~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v~ 334 (600)
.. +.........+..++...+.. ...++.-++|||+++..+...++.++..+-.....+++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 000000011122222222221 12467779999999988888888888887765556666665554 3333
Q ss_pred -hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHH
Q 039283 335 -ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 393 (600)
Q Consensus 335 -~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~ 393 (600)
........+.+.+|+.++....+.+.+-.... . ...+.+..|++.++|.|--+..
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI-~---~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL-P---FEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 22334578999999999999998876533211 1 1236678899999998854433
No 27
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.73 E-value=2.6e-07 Score=99.64 Aligned_cols=192 Identities=18% Similarity=0.176 Sum_probs=113.9
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...... ++.. .+...-...+.+.
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~------~~~~-~pCg~C~sC~~I~ 82 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET------GVTS-TPCEVCATCKAVN 82 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc------CCCC-CCCccCHHHHHHh
Confidence 358999999999999996442 346789999999999999998876321110 1100 0000001111111
Q ss_pred HHhhc-----CCCCCcccHHHHHHHHHH----HhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HH
Q 039283 264 NSIAS-----DQCTDKDDLNLLQEKLKK----QLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GV 333 (600)
Q Consensus 264 ~~l~~-----~~~~~~~~~~~l~~~l~~----~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v 333 (600)
..-.. ... .....++..+.+.. ...++.-++|+|+++..+....+.++..+.....++.+|++|.+. .+
T Consensus 83 ~g~hpDviEIDAA-s~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 83 EGRFIDLIEIDAA-SRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred cCCCCceEEeccc-ccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 00000 000 01122222222211 123566799999999887777888877776655667777777653 22
Q ss_pred H-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHH
Q 039283 334 A-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 392 (600)
Q Consensus 334 ~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~ 392 (600)
. ........+++.+++.++..+.+.+.+...+. . -..+....|++.++|.+..+.
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI-~---id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQI-A---ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHH
Confidence 2 22234578999999999999988776643221 1 123567789999999885443
No 28
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.72 E-value=3.1e-07 Score=98.76 Aligned_cols=198 Identities=15% Similarity=0.140 Sum_probs=114.8
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.++||.+.-++.|.+++..+. -...+.++|+.|+||||+|+.+.+.......-.... +. +.....-.....|.
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~~-~~PCG~C~sC~~I~ 88 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-IT-AQPCGQCRACTEID 88 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-CC-CCCCcccHHHHHHH
Confidence 358999999999999996542 345678999999999999998876432110000000 00 00000001111111
Q ss_pred HH-----hhcCCCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccC-hHH
Q 039283 264 NS-----IASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRN-QGV 333 (600)
Q Consensus 264 ~~-----l~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v 333 (600)
.. +..... .....++..+.+... ..++.-++|||+++..+...++.++..|..-..++++|++|.+ ..+
T Consensus 89 aG~hpDviEIdAa-s~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kL 167 (700)
T PRK12323 89 AGRFVDYIEMDAA-SNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKI 167 (700)
T ss_pred cCCCCcceEeccc-ccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhh
Confidence 00 000000 111222222222221 1356679999999988888888888888765566666665554 333
Q ss_pred H-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHH
Q 039283 334 A-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 393 (600)
Q Consensus 334 ~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~ 393 (600)
. ...+....+.+..++.++..+.+.+.+..... .. ..+....|++.++|.|.-...
T Consensus 168 lpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi-~~---d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 168 PVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI-AH---EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred hhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3 22234578999999999999988876533221 11 125567899999999964443
No 29
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.71 E-value=7.6e-08 Score=103.21 Aligned_cols=204 Identities=19% Similarity=0.183 Sum_probs=117.9
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
+++|.+.-++.|..++.... -...+.++|++|+||||+|+.+++.....+.+...+|.|.+-. .+.......+.
T Consensus 15 dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~-~i~~~~h~dv~ 88 (504)
T PRK14963 15 EVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCL-AVRRGAHPDVL 88 (504)
T ss_pred HhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhH-HHhcCCCCceE
Confidence 58999998999988885432 3356699999999999999998875432222222333332100 00000000000
Q ss_pred HhhcCCCCCcccHHHHHHHHHH-HhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccC-hHHHhh-cCccc
Q 039283 265 SIASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRN-QGVAET-MRAVS 341 (600)
Q Consensus 265 ~l~~~~~~~~~~~~~l~~~l~~-~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v~~~-~~~~~ 341 (600)
.+.........+..++...+.. -..+++-++|||+++..+...++.++..+......+.+|++|.. ..+... .....
T Consensus 89 el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~ 168 (504)
T PRK14963 89 EIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQ 168 (504)
T ss_pred EecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceE
Confidence 0111100011122222222221 12346669999999887777788888777665555566655543 333222 22346
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHH-HHHHhhh
Q 039283 342 TKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA-KTLGGLL 398 (600)
Q Consensus 342 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai-~~~~~~L 398 (600)
.+.+.+++.++....+.+.+...+. .. ..+.+..|++.++|.+--+ ..+-.++
T Consensus 169 ~~~f~~ls~~el~~~L~~i~~~egi-~i---~~~Al~~ia~~s~GdlR~aln~Lekl~ 222 (504)
T PRK14963 169 HFRFRRLTEEEIAGKLRRLLEAEGR-EA---EPEALQLVARLADGAMRDAESLLERLL 222 (504)
T ss_pred EEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8999999999999999887643321 11 2366788999999999544 4443433
No 30
>PRK04195 replication factor C large subunit; Provisional
Probab=98.69 E-value=2.2e-06 Score=92.63 Aligned_cols=247 Identities=18% Similarity=0.157 Sum_probs=138.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|.+..++.|.+|+.... .....+.+.|+|++|+||||+|+.+++.. .|+ .+-++.+...+ ...+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~--~g~~~~~lLL~GppG~GKTtla~ala~el----~~~-~ielnasd~r~-~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWL--KGKPKKALLLYGPPGVGKTSLAHALANDY----GWE-VIELNASDQRT-ADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHc----CCC-EEEEccccccc-HHHHHHHH
Confidence 358999999999999996532 11236789999999999999999998743 122 22334443222 22233333
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh----hhHHhhcCCCCCCCCCcEEEEeccCh-HHHh--h
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY----NSWRALSCPFGAGASGSKIVVTHRNQ-GVAE--T 336 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~--~ 336 (600)
........ ....++-+||||+++.... ..+..+...+.. .+..||+|+.+. .... .
T Consensus 86 ~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 22211110 0113678999999976432 234455444442 234466665432 1111 1
Q ss_pred cCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCC-C--ChhHHHHHHHh
Q 039283 337 MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGK-D--DLNDWEIVLNA 413 (600)
Q Consensus 337 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~-~--~~~~w~~~l~~ 413 (600)
-.....+.+.+++.++....+.+.+..... ..+ .+....|++.++|..-.+......+... . +.+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~egi-~i~---~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKEGI-ECD---DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 123467899999999999888776643322 222 3678889999999887665544444433 1 2222222211
Q ss_pred ccccccCCCccchHHHHHhhh-CCChhHHHHHHHhccCCCCCcccHHHHHHHHHHcCCccc
Q 039283 414 NIWDLQEDKCDIIPALRVSYH-FLPPQLKQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQ 473 (600)
Q Consensus 414 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~ 473 (600)
.+...++..++..-+. .-+......+..+. ++. ..+..|+.+.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~~~-------~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYDVD-------EDP-DDLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHccc-------CCH-HHHHHHHHhccccc
Confidence 1223456666665554 22233333322222 222 35778999988653
No 31
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.5e-06 Score=89.44 Aligned_cols=208 Identities=17% Similarity=0.151 Sum_probs=129.1
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.+.+|+.+++++...|...- .++.+.-+.|+|.+|+|||+.++.+.........=...+.|++-...+...++..|++
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~--~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPAL--RGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHh--cCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 48999999999998886543 2233445999999999999999999985433222122689999999999999999999
Q ss_pred HhhcCCCCCcccHHHHHHHHHHHhC--CCcEEEEEecCCCCChh---hHHhhcCCCCCCCCCcEEEEeccChHHHhhcC-
Q 039283 265 SIASDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNENYN---SWRALSCPFGAGASGSKIVVTHRNQGVAETMR- 338 (600)
Q Consensus 265 ~l~~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVlDdv~~~~~~---~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~- 338 (600)
+++.... ......+....+.+.+. ++.+++|||++...... ..-.+...-.......-+|..+-+......+.
T Consensus 96 ~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~ 174 (366)
T COG1474 96 KLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDP 174 (366)
T ss_pred HcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhh
Confidence 9974433 45556666677777664 58899999999543211 12222222222212223344444433322221
Q ss_pred ------ccceeecCCCCHHHHHHHHHHhhcCCC-CCCCChhHHHHHHHHHHhhcC-chhHHHHHH
Q 039283 339 ------AVSTKTLKELSDDDCLRVLIQHSLGAR-DFNIPQSLKEVAEKIVKKCKG-LPLAAKTLG 395 (600)
Q Consensus 339 ------~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~l~~~~~~I~~~~~G-lPLai~~~~ 395 (600)
....+..+|=+.+|-..++..++-..- .....+..-+.+..++..-+| -=.||..+-
T Consensus 175 rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 175 RVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 223477889999999999988864321 112333444444445555554 334444443
No 32
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.68 E-value=4e-08 Score=98.82 Aligned_cols=292 Identities=17% Similarity=0.181 Sum_probs=182.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF-DVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
..+.+.++|.|||||||++-.+.. ...-|....|+..-.+. +...+.-.+...++.+.. +-+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~----~g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQ----PGDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhcccccc----cchHHHHHHHHHH
Confidence 457899999999999999966654 56678776665544444 444444444444665443 1122344556666
Q ss_pred CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHHhhcCccceeecCCCCHH-HHHHHHHHhhcCCC-C
Q 039283 289 SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVAETMRAVSTKTLKELSDD-DCLRVLIQHSLGAR-D 366 (600)
Q Consensus 289 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L~~~-ea~~Lf~~~a~~~~-~ 366 (600)
.+++.++|+||...- ...-..+...+..+.+.-.|+.|+|..... .+...+.+++|+.. ++.++|...+.... .
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 789999999998321 112223344455555666789999876432 23456677777765 78888876653221 1
Q ss_pred CCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCCChhHHHHHHHhccccc-------cCCCccchHHHHHhhhCCChh
Q 039283 367 FNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEIVLNANIWDL-------QEDKCDIIPALRVSYHFLPPQ 439 (600)
Q Consensus 367 ~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~~l~~~~~~~-------~~~~~~i~~~l~~sy~~L~~~ 439 (600)
.-...........|+++..|.|++|..+++..+.-.. .+-...++.....+ ...+....+.+.+||.-|...
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~-~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSP-DEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCH-HHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1223344577889999999999999999998877632 11111121111111 111245778999999999999
Q ss_pred HHHHHHHhccCCCCCcccHHHHHHHHHHcCCcccccCCccHHHHHHHHHHHHhhCCCcccccC-CCCeEEEchHHHHHHH
Q 039283 440 LKQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQEYNGRKMEDLGRQFVRELHSRSLFQLSSK-DTSRFVMHDLINDLAR 518 (600)
Q Consensus 440 ~k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~rsLl~~~~~-~~~~~~mH~lv~~~a~ 518 (600)
.+-.|..++.|...|... ...|.+-|-.. ..+.-..-..+..|++.+++..... +...|+.-+-++.|+.
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998877554 23344443211 0112234455778888888765432 3455666666677766
Q ss_pred HHhc
Q 039283 519 WAAG 522 (600)
Q Consensus 519 ~~~~ 522 (600)
.+..
T Consensus 312 aeL~ 315 (414)
T COG3903 312 AELH 315 (414)
T ss_pred HHHH
Confidence 5544
No 33
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=9.9e-07 Score=90.94 Aligned_cols=197 Identities=15% Similarity=0.116 Sum_probs=115.6
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceE----EEEeCCCCCHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKA----WTCVSEDFDVFTV 258 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~----wv~vs~~~~~~~~ 258 (600)
-..++|.+...+.|.+.+..+. -...+.++|+.|+||+++|..+.+..--........ -.++... ..-..
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~-~~c~~ 91 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID-PDHPV 91 (365)
T ss_pred hhhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC-CCChH
Confidence 3468999999999999886532 345688999999999999987765331111100000 0000000 00011
Q ss_pred HHHHHHHhhc-------CCCC------CcccHHHHHHHHHHHhC-----CCcEEEEEecCCCCChhhHHhhcCCCCCCCC
Q 039283 259 SKSILNSIAS-------DQCT------DKDDLNLLQEKLKKQLS-----GKKFLLVLDDVWNENYNSWRALSCPFGAGAS 320 (600)
Q Consensus 259 l~~il~~l~~-------~~~~------~~~~~~~l~~~l~~~L~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 320 (600)
.+.+...-.. .... .....++ +..+.+.+. +.+-++|+|+++..+......++..+.....
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 1111110000 0000 1112333 223333332 5677999999999888888888877776556
Q ss_pred CcEEEEeccChH-HH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 321 GSKIVVTHRNQG-VA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 321 gs~IlvTtR~~~-v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
++.+|++|.+.. +. ........+.+.+++.++..+++.+..... .+ +....++..++|.|+....+
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~~-----~~---~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPDL-----PD---DPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcccC-----CH---HHHHHHHHHcCCCHHHHHHH
Confidence 677777776653 22 222345789999999999999998754211 11 22367899999999866554
No 34
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.3e-06 Score=89.58 Aligned_cols=199 Identities=16% Similarity=0.175 Sum_probs=117.3
Q ss_pred CCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc--cCCceEEEEeCCCCCHHHHH
Q 039283 182 NEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR--HFQIKAWTCVSEDFDVFTVS 259 (600)
Q Consensus 182 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~--~F~~~~wv~vs~~~~~~~~l 259 (600)
....++|.+...+.|...+.+.. -...+.|+|+.|+||||+|..+.....-.. .+... ....+.......
T Consensus 21 ~~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~---~~~~~~~~c~~c 92 (351)
T PRK09112 21 ENTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPE---TLADPDPASPVW 92 (351)
T ss_pred chhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCcc---ccCCCCCCCHHH
Confidence 34568999999999999985442 345789999999999999988876432110 01100 001111111122
Q ss_pred HHHHHH-------hhcCC-C-----CCcccHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCC
Q 039283 260 KSILNS-------IASDQ-C-----TDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWRALSCPFGAGASG 321 (600)
Q Consensus 260 ~~il~~-------l~~~~-~-----~~~~~~~~l~~~l~~~L-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 321 (600)
+.+... +..+. . ......++.. .+.+.+ .++.-++|+|+++..+....+.++..+.....+
T Consensus 93 ~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~ 171 (351)
T PRK09112 93 RQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPAR 171 (351)
T ss_pred HHHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCC
Confidence 222221 10000 0 0111233322 333333 256679999999988888888887777654455
Q ss_pred cEEEEeccCh-HHH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 322 SKIVVTHRNQ-GVA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 322 s~IlvTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
+.+|++|... .+. ...+....+.+.+++.++..+++.+..... . -..+.+..|++.++|.|.....+.
T Consensus 172 ~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~---~---~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 172 ALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQ---G---SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhccc---C---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5555544433 222 222344689999999999999998743211 1 112456789999999998665443
No 35
>PF13173 AAA_14: AAA domain
Probab=98.62 E-value=8.9e-08 Score=83.87 Aligned_cols=119 Identities=20% Similarity=0.193 Sum_probs=77.9
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
+++.|.|+.|+|||||+++++.+.. .....++++..+....... +.+ ..+.+.+....+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~~ 61 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKPG 61 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhccC
Confidence 6899999999999999999987433 2345567765543211000 000 223333334447
Q ss_pred cEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHHhh------cCccceeecCCCCHHHH
Q 039283 292 KFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVAET------MRAVSTKTLKELSDDDC 353 (600)
Q Consensus 292 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~------~~~~~~~~l~~L~~~ea 353 (600)
+.+|+||++... ..|......+.+..+..+|++|+.+...... .+....+++.||+..|.
T Consensus 62 ~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 62 KKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 889999999554 5677777777666567899999998755532 12335788999987763
No 36
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=1.1e-06 Score=91.50 Aligned_cols=193 Identities=13% Similarity=0.082 Sum_probs=110.2
Q ss_pred ccccccchHHHHHHHHhcCCCC----CCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLR----ADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~----~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
.++|.+.-++.|.+++..+... ...-...+.++|++|+|||++|..+.....-...- +-.++.. ....
T Consensus 6 ~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~----~~~Cg~C----~~C~ 77 (394)
T PRK07940 6 DLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD----EPGCGEC----RACR 77 (394)
T ss_pred hccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC----CCCCCCC----HHHH
Confidence 5889999999999999654210 00134668899999999999998886532111000 0000000 0001
Q ss_pred HHHHHhhcC-----CCCCcccHHH---HHHHHHH-HhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 261 SILNSIASD-----QCTDKDDLNL---LQEKLKK-QLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 261 ~il~~l~~~-----~~~~~~~~~~---l~~~l~~-~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
.+...-.+. ........++ +.+.+.. -..+++-++|+|+++..+....+.+...+....+++.+|++|.+.
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 110000000 0001111222 2222211 112455688899998887777777777776655667677666654
Q ss_pred -HHH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 332 -GVA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 332 -~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
.+. +..+....+.+.+++.++..+.+.+... .+ .+.+..++..++|.|.....+
T Consensus 158 ~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~~------~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 158 EDVLPTIRSRCRHVALRTPSVEAVAEVLVRRDG------VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHChHHHHhhCeEEECCCCCHHHHHHHHHHhcC------CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 333 2223457899999999999988874321 11 255778899999999755443
No 37
>PLN03025 replication factor C subunit; Provisional
Probab=98.61 E-value=9e-07 Score=90.43 Aligned_cols=184 Identities=15% Similarity=0.156 Sum_probs=107.5
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCc-eEEEEeCCCCCHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQI-KAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~l~~il 263 (600)
+++|.+..+..|.+++... ..+.+.++|++|+||||+|..+++... ...|.. .+-++.++.... +.++.++
T Consensus 14 ~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~eln~sd~~~~-~~vr~~i 85 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELL-GPNYKEAVLELNASDDRGI-DVVRNKI 85 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHh-cccCccceeeecccccccH-HHHHHHH
Confidence 5889988888888887432 345678999999999999999887421 122221 111222222111 1222222
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH-hhcCccc
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA-ETMRAVS 341 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~-~~~~~~~ 341 (600)
..+..... ..-.++.-++|||+++.........+...+......+++++++... .+. .......
T Consensus 86 ~~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~ 151 (319)
T PLN03025 86 KMFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCA 151 (319)
T ss_pred HHHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhh
Confidence 22111100 0002356699999998877666556655554434556777766542 111 1112335
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 342 TKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 342 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
.+++.+++.++....+...+-..+. ..+ .+....|++.++|..-.+...
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi-~i~---~~~l~~i~~~~~gDlR~aln~ 200 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKV-PYV---PEGLEAIIFTADGDMRQALNN 200 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 7899999999999988877643221 222 256788899999887544433
No 38
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.2e-06 Score=95.47 Aligned_cols=195 Identities=17% Similarity=0.196 Sum_probs=113.8
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccC--CceEEEEeCCCCCHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF--QIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~l~~ 261 (600)
.+++|-+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+...-.... ...-. .+...-.....
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 358999999999999986542 34567899999999999998886532111000 00000 01111111111
Q ss_pred HHH-------HhhcCCCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccC
Q 039283 262 ILN-------SIASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRN 330 (600)
Q Consensus 262 il~-------~l~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~ 330 (600)
|.. .+... .....++..+.+... ..++.-++|||+++..+...++.++..+......+++|++|.+
T Consensus 87 i~~g~h~D~~eldaa---s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 87 IDSGRFVDYTELDAA---SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHcCCCCceeecCcc---cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 110 00000 111222222222211 1234558999999998888888888888766566666665543
Q ss_pred -hHHH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 331 -QGVA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 331 -~~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
..+. ........+++.+++.++..+.+.+.+...+. .. ..+....|++.++|.+.-+..+
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi-~i---e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV-PA---EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 3322 22334578999999999999988876543221 11 2256788899999988544433
No 39
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.60 E-value=1.7e-06 Score=88.55 Aligned_cols=182 Identities=15% Similarity=0.142 Sum_probs=106.8
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEe--CCCCCHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCV--SEDFDVFTVSKS 261 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~l~~ 261 (600)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+.+.... ..+. ..++.+ +...... ....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~-~~~~-~~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYG-EDWR-ENFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcC-Cccc-cceEEeccccccchH-HHHH
Confidence 35889999999999998543 3345799999999999999998874311 1121 122222 2211111 1111
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH-hhcCc
Q 039283 262 ILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA-ETMRA 339 (600)
Q Consensus 262 il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~-~~~~~ 339 (600)
.+..+....+ .....+-++++|+++.........+...+......+.+|+++... .+. .....
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 1111111000 001235689999997665555555655555444556777766432 111 11123
Q ss_pred cceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHH
Q 039283 340 VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 393 (600)
Q Consensus 340 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~ 393 (600)
...+.+.+++.++....+...+...+. ..+ .+.+..+++.++|.+.-+..
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~-~i~---~~al~~l~~~~~gd~r~~~~ 202 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGI-EIT---DDALEAIYYVSEGDMRKAIN 202 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 357899999999999888877643321 122 35678889999999866433
No 40
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.5e-06 Score=93.60 Aligned_cols=187 Identities=20% Similarity=0.183 Sum_probs=115.1
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhh-------------------ccCCce
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ-------------------RHFQIK 244 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~-------------------~~F~~~ 244 (600)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++...-. ..|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 358999999999999885432 34567899999999999999887632110 012222
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcE
Q 039283 245 AWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSK 323 (600)
Q Consensus 245 ~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 323 (600)
++++......+ .+...+.+.+... ..+++-++|+|+++..+...++.++..+......+.
T Consensus 91 ieidaas~~gv-------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGV-------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCH-------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 22222111111 1222222222211 235667999999988877788888887776655666
Q ss_pred EEEeccC-hHHH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHHhhh
Q 039283 324 IVVTHRN-QGVA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLGGLL 398 (600)
Q Consensus 324 IlvTtR~-~~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~~~L 398 (600)
+|++|.+ ..+. ........+++.+++.++....+.+.+...+. . ...+....|++.++|.+- |+..+-.++
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi-~---~e~~Al~~Ia~~s~GdlR~alnlLek~i 225 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENI-N---SDEQSLEYIAYHAKGSLRDALSLLDQAI 225 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 6654433 3333 22334578999999999988888765432211 1 123566789999999774 555554433
No 41
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.60 E-value=1.7e-07 Score=98.19 Aligned_cols=196 Identities=16% Similarity=0.102 Sum_probs=114.5
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+++|.+.-+..|..++.... -...+.++|+.|+||||+|+.+.+...-. .... ...+....+...+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCC
Confidence 358999999999999986432 23468999999999999999987642111 1000 001111111111111100
Q ss_pred HH---hhcCCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccC-hHHH-hhc
Q 039283 264 NS---IASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRN-QGVA-ETM 337 (600)
Q Consensus 264 ~~---l~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v~-~~~ 337 (600)
.. +.........+..++.+.+... ..++.-++|+|+++..+...++.++..+......+.+|++|.+ ..+. ...
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 00 0000000112223333333221 2356679999999988888888888877665456665555544 3332 222
Q ss_pred CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHH
Q 039283 338 RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 391 (600)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai 391 (600)
.....|.+.+++.++..+.+.+.+...+. .. ..+....|++.++|.+.-.
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~Egi-~~---e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIENV-QY---DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCChHHHH
Confidence 34467999999999999888776543221 11 2366788999999998443
No 42
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.59 E-value=3.6e-07 Score=81.57 Aligned_cols=124 Identities=18% Similarity=0.125 Sum_probs=71.2
Q ss_pred ccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039283 187 YGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSI 266 (600)
Q Consensus 187 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l 266 (600)
+|++..+..+...+... ..+.+.|+|++|+|||+|++.+++... ..-...+++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888542 346899999999999999999987542 222345566554432211111100000
Q ss_pred hcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh---hhHHhhcCCCCCC---CCCcEEEEeccCh
Q 039283 267 ASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY---NSWRALSCPFGAG---ASGSKIVVTHRNQ 331 (600)
Q Consensus 267 ~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~---~~~~~l~~~l~~~---~~gs~IlvTtR~~ 331 (600)
............++.+||+||++.... ..+..+...+... ..+..||+||...
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 011111222345678999999975422 2233333333221 3577888888765
No 43
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.59 E-value=9.3e-07 Score=96.60 Aligned_cols=194 Identities=18% Similarity=0.167 Sum_probs=114.5
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.++||.+.-++.|...+..+. -...+.++|+.|+||||+|+.+.+...-...+. ..+...-...+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~-------~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGIT-------ATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCC-------CCCCCCCHHHHHHH
Confidence 358999999999999885432 234568999999999999998876432111000 00111111111211
Q ss_pred HH-------hhcCCCCCcccHHHHHHHHHH-HhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccC-hHHH
Q 039283 264 NS-------IASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRN-QGVA 334 (600)
Q Consensus 264 ~~-------l~~~~~~~~~~~~~l~~~l~~-~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v~ 334 (600)
.. +........++..++.+.+.. -..++.-++|||+++..+....+.++..+......+++|++|.+ ..+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 10 000000011122222222221 12456779999999988888888888877665556666665554 3332
Q ss_pred -hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHH
Q 039283 335 -ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 393 (600)
Q Consensus 335 -~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~ 393 (600)
........+.+.+++.++....+.+..-.... . ...+....|++.++|.+--+..
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i-~---~e~~aL~~Ia~~s~Gs~R~Al~ 219 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQI-P---FEPRALQLLARAADGSMRDALS 219 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 22334578999999999999998876532211 1 1235567899999998864433
No 44
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.58 E-value=6.8e-07 Score=83.69 Aligned_cols=183 Identities=20% Similarity=0.230 Sum_probs=97.0
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+|+|.+.-+..+.-++..... ..+....+.+|||+|+||||||..+.+.. ...| .+.+... .
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e~--~~~~---~~~sg~~-i---------- 86 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANEL--GVNF---KITSGPA-I---------- 86 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHHC--T--E---EEEECCC------------
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhcc--CCCe---Eeccchh-h----------
Confidence 4699999888877655542211 23467889999999999999999998743 2333 1222211 0
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCC--------CC-----------CCcEE
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGA--------GA-----------SGSKI 324 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~--------~~-----------~gs~I 324 (600)
....++...+.+ + +++-+|.+|.++..+...-+.+...+.+ .+ +-+-|
T Consensus 87 -----------~k~~dl~~il~~-l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 87 -----------EKAGDLAAILTN-L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp ------------SCHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred -----------hhHHHHHHHHHh-c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 011112222222 1 2455777888877654433333222111 11 12345
Q ss_pred EEeccChHHHhhcC-cc-ceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcC
Q 039283 325 VVTHRNQGVAETMR-AV-STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRG 400 (600)
Q Consensus 325 lvTtR~~~v~~~~~-~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~ 400 (600)
=.|||...+...+. .+ -..+|+.-+.+|-..+..+.+..-. -+-..+.+.+|+++|.|-|--..-+-..++.
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~----i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILN----IEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhC----CCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 56888765544333 22 3457999999999999987764322 2334578999999999999876666555543
No 45
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.58 E-value=2.3e-06 Score=91.61 Aligned_cols=191 Identities=20% Similarity=0.207 Sum_probs=113.3
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCc-eEEEEeCCCCCHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQI-KAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~l~~il 263 (600)
+++|.+.-+..|...+..+ .-...+.++|+.|+||||+|+.+++.......... ..+..+... .....+.
T Consensus 22 dliGq~~vv~~L~~ai~~~-----ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i~ 92 (507)
T PRK06645 22 ELQGQEVLVKVLSYTILND-----RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISFN 92 (507)
T ss_pred HhcCcHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHHh
Confidence 5899999999998877543 23467899999999999999999874321111100 000000100 0011111
Q ss_pred HH-------hhcCCCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEE-eccCh
Q 039283 264 NS-------IASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVV-THRNQ 331 (600)
Q Consensus 264 ~~-------l~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TtR~~ 331 (600)
.. +... .....+++.+.+... ..+++-++|+|+++..+...++.+...+....+.+.+|+ ||+..
T Consensus 93 ~~~h~Dv~eidaa---s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~ 169 (507)
T PRK06645 93 NHNHPDIIEIDAA---SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQ 169 (507)
T ss_pred cCCCCcEEEeecc---CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChH
Confidence 10 0000 111222222222211 235677999999998877788888877776556666655 44444
Q ss_pred HHHhhc-CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHH
Q 039283 332 GVAETM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 391 (600)
Q Consensus 332 ~v~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai 391 (600)
.+...+ .....+++.+++.++....+.+.+...+. .. ..+....|++.++|.+--+
T Consensus 170 kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi-~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 170 KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL-KT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHH
Confidence 443322 34467999999999999999887754321 11 2255677999999987444
No 46
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=9.7e-07 Score=96.10 Aligned_cols=194 Identities=15% Similarity=0.167 Sum_probs=111.4
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+......... +..++.. .....+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~pCg~C----~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GEPCGVC----QSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CCCCccc----HHHHHHh
Confidence 358999999999999986432 345789999999999999988876321111000 0000000 0000000
Q ss_pred HH-----hhcCCCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HH
Q 039283 264 NS-----IASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GV 333 (600)
Q Consensus 264 ~~-----l~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v 333 (600)
.. +..... .....+.+.+.+... ..+++-++|||+++..+......++..+......+++|++|.+. .+
T Consensus 84 ~g~~~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL 162 (709)
T PRK08691 84 AGRYVDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKV 162 (709)
T ss_pred ccCccceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcccc
Confidence 00 000000 111222222222111 12566799999998777666777777665544566777766543 22
Q ss_pred H-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 334 A-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 334 ~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
. ...+....+.+.+++.++....+.+.+-..+. .. ..+.+..|++.++|.+.-+..+
T Consensus 163 ~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-~i---d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 163 PVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-AY---EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred chHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHHhCCCHHHHHHH
Confidence 2 11233467889999999999988876643321 11 2356788999999998544433
No 47
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.57 E-value=3e-06 Score=88.25 Aligned_cols=183 Identities=17% Similarity=0.188 Sum_probs=111.1
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc--------------------cCCc
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR--------------------HFQI 243 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~--------------------~F~~ 243 (600)
..++|.+..++.|.+++.... -...+.++|++|+|||++|+.+........ +++
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~- 87 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLD- 87 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCC-
Confidence 357999999999999985432 345788999999999999988876421110 111
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCc
Q 039283 244 KAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGS 322 (600)
Q Consensus 244 ~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 322 (600)
.++++....... .+...+.+.+... ..+++-++|+|++..........+...+......+
T Consensus 88 ~~~~~~~~~~~~-------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 88 VIEIDAASNNGV-------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred EEEeeccccCCH-------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 122221111110 1112222221111 12455588999997666556667766665544566
Q ss_pred EEEEeccChH-HHh-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 323 KIVVTHRNQG-VAE-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 323 ~IlvTtR~~~-v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
.+|++|.+.. +.. .......+++.+++.++..+.+...+-..+. ..+ .+.+..|++.++|.|..+....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~-~i~---~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI-KIE---DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCChHHHHHHH
Confidence 7777765543 222 2223467889999999999888876643221 122 3677889999999997665444
No 48
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.56 E-value=1.7e-06 Score=92.09 Aligned_cols=187 Identities=20% Similarity=0.258 Sum_probs=109.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhcc-------------------CCce
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH-------------------FQIK 244 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~-------------------F~~~ 244 (600)
..++|.+.-...|...+..+. -...+.++|++|+||||+|+.+.+....... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 358999888888888775432 2356899999999999999998764221110 0011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcE
Q 039283 245 AWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSK 323 (600)
Q Consensus 245 ~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~-~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 323 (600)
..++.+..... .+...+.+.+.. ...+++-++|+|+++.......+.++..+......+.
T Consensus 89 ~el~aa~~~gi-------------------d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELDAASNRGI-------------------DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEeCcccCCH-------------------HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 12221111111 111111111111 1234667999999977655566667666655444455
Q ss_pred EEEeccC-hHHHh-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcC-chhHHHHHHhhh
Q 039283 324 IVVTHRN-QGVAE-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKG-LPLAAKTLGGLL 398 (600)
Q Consensus 324 IlvTtR~-~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~G-lPLai~~~~~~L 398 (600)
+|++|.+ ..+.. .......+.+.+++.++....+.+.+...+. ..+ .+....|++.++| .+.++..+-.+.
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi-~i~---~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGI-EID---REALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 5545444 22322 2234568999999999999988877643221 122 3567778887765 467777776644
No 49
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.54 E-value=3.4e-06 Score=79.25 Aligned_cols=91 Identities=20% Similarity=0.250 Sum_probs=65.3
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHHhh-cCccceeecCCCCHHHHHHHHHHhhcCCCCC
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVAET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDF 367 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 367 (600)
+.+-++|+||++..+...++.++..+....+.+.+|++|++. .+... ......+.+.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 456689999998777777778877776655667777777654 22111 123468999999999999988776 1
Q ss_pred CCChhHHHHHHHHHHhhcCchhH
Q 039283 368 NIPQSLKEVAEKIVKKCKGLPLA 390 (600)
Q Consensus 368 ~~~~~l~~~~~~I~~~~~GlPLa 390 (600)
.+ .+.+..|++.++|.|..
T Consensus 169 -i~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 -IS---EEAAELLLALAGGSPGA 187 (188)
T ss_pred -CC---HHHHHHHHHHcCCCccc
Confidence 11 25688999999999863
No 50
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.54 E-value=3.8e-06 Score=82.69 Aligned_cols=158 Identities=16% Similarity=0.237 Sum_probs=99.6
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
+..+.+.+||++|+||||||+.+....+... ..+|..|....-..-++.|+++-.. ...+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~----------------~~~l 219 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQN----------------EKSL 219 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHH----------------HHhh
Confidence 5678899999999999999999987433222 4467766554433444444443211 1234
Q ss_pred CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEE--eccChHHH---hhcCccceeecCCCCHHHHHHHHHHhhc-
Q 039283 289 SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVV--THRNQGVA---ETMRAVSTKTLKELSDDDCLRVLIQHSL- 362 (600)
Q Consensus 289 ~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TtR~~~v~---~~~~~~~~~~l~~L~~~ea~~Lf~~~a~- 362 (600)
.++|.+|.+|.|+.-+..+.+. +||.-..|..++| ||.++..- ..+....++.|++|..++...++.+...
T Consensus 220 ~krkTilFiDEiHRFNksQQD~---fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDT---FLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhc---ccceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 5789999999997655433333 3454445666555 77776432 2234557899999999999999987432
Q ss_pred -C-CCCC--CCCh----hHHHHHHHHHHhhcCchh
Q 039283 363 -G-ARDF--NIPQ----SLKEVAEKIVKKCKGLPL 389 (600)
Q Consensus 363 -~-~~~~--~~~~----~l~~~~~~I~~~~~GlPL 389 (600)
+ .... ..+. -...+..-++..|.|-.-
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 1 1110 1111 234567778888888764
No 51
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.6e-06 Score=93.30 Aligned_cols=187 Identities=16% Similarity=0.136 Sum_probs=112.8
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc-------------------cCCce
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR-------------------HFQIK 244 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~-------------------~F~~~ 244 (600)
.++||-+.-++.|.+++.... -...+.++|+.|+||||+|+.+.+...-.. .|...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 358999999999999996432 234678999999999999988876432111 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcE
Q 039283 245 AWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSK 323 (600)
Q Consensus 245 ~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~-~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 323 (600)
+.++.+....+. +..++.+.+.. -..++.-++|+|+++..+....+.++..+......++
T Consensus 91 ~eidaas~~~v~-------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 91 FEVDAASRTKVE-------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred EEEcccccCCHH-------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 222222111111 11111111111 1134566899999998887788888777766656677
Q ss_pred EEEeccCh-HHH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHH-HHHHhhh
Q 039283 324 IVVTHRNQ-GVA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA-KTLGGLL 398 (600)
Q Consensus 324 IlvTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai-~~~~~~L 398 (600)
+|++|.+. .+. ........+++.+++.++....+.+.+-..+. ... .+....|++.++|.+.-+ ..+-..+
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi-~~~---~~al~~ia~~s~GslR~al~lLdq~i 225 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENV-EFE---NAALDLLARAANGSVRDALSLLDQSI 225 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 77665443 222 22223467889999999888776655433221 111 245678889999988544 3343333
No 52
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.53 E-value=3.1e-06 Score=89.88 Aligned_cols=181 Identities=15% Similarity=0.136 Sum_probs=112.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhh-------------------ccCCce
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ-------------------RHFQIK 244 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~-------------------~~F~~~ 244 (600)
.+++|.+.-++.|.+.+..+. -...+.++|+.|+||||+|+.+....... ..+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 358999999999988885432 23578999999999999998886521100 111222
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEE
Q 039283 245 AWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKI 324 (600)
Q Consensus 245 ~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 324 (600)
+.++.+....+.+ .+.+++..... -..++.-++|+|+++..+....+.+...+....+.+++
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~-----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~f 149 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL-----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKF 149 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc-----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEE
Confidence 3333322222211 11222211100 01245668999999887777788888777766667777
Q ss_pred EEeccC-hHHHh-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHH
Q 039283 325 VVTHRN-QGVAE-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 391 (600)
Q Consensus 325 lvTtR~-~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai 391 (600)
|++|.+ ..+.. .......+.+.+++.++....+.+.+...+. .. ..+.+..|++.++|.+.-+
T Consensus 150 Ilatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi-~i---~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 150 ILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENI-EH---DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHH
Confidence 766643 33332 2234578999999999999998877643322 11 2256778999999988543
No 53
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.53 E-value=1.6e-06 Score=96.64 Aligned_cols=171 Identities=25% Similarity=0.298 Sum_probs=99.5
Q ss_pred CccccccchHH---HHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGREKDKE---AIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~~e~~---~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
++|+|.+..+. .|...+.. +....+.|+|++|+||||||+.+++. ....|. .++... ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~---~lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFS---SLNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCcce---eehhhh-hhh-----
Confidence 35889888764 56666643 34567899999999999999999873 223331 111110 000
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHh--CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEE--eccChH--HH
Q 039283 261 SILNSIASDQCTDKDDLNLLQEKLKKQL--SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVV--THRNQG--VA 334 (600)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~l~~~l~~~L--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TtR~~~--v~ 334 (600)
.+...........+ .+++.+|||||++..+...++.+...+. .|..+++ ||.+.. +.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 01111111121111 2467899999998776666666665443 2444554 344431 11
Q ss_pred -hhcCccceeecCCCCHHHHHHHHHHhhcC------CCCCCCChhHHHHHHHHHHhhcCchhHH
Q 039283 335 -ETMRAVSTKTLKELSDDDCLRVLIQHSLG------ARDFNIPQSLKEVAEKIVKKCKGLPLAA 391 (600)
Q Consensus 335 -~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~------~~~~~~~~~l~~~~~~I~~~~~GlPLai 391 (600)
........+.+++++.++...++.+.+.. ...... ..+....|++.+.|..--+
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I---~deaL~~La~~s~GD~R~l 214 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDL---EPEAEKHLVDVANGDARSL 214 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCC---CHHHHHHHHHhCCCCHHHH
Confidence 11123467999999999999999876531 111112 2356677888888875433
No 54
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.52 E-value=2.9e-06 Score=93.78 Aligned_cols=202 Identities=20% Similarity=0.216 Sum_probs=121.1
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccC---CceEEEEeCCC---CCHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF---QIKAWTCVSED---FDVFTV 258 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~---~~~~~~ 258 (600)
.++|++..+..+.+.+... ....+.|+|++|+||||||+.+++.......+ ...-|+.+... .+...+
T Consensus 155 ~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i 228 (615)
T TIGR02903 155 EIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREV 228 (615)
T ss_pred hceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHH
Confidence 5899999999988887432 34579999999999999999998754333332 12345544321 122222
Q ss_pred HHHH---------------HHHhhcCC-----------------CCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChh
Q 039283 259 SKSI---------------LNSIASDQ-----------------CTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN 306 (600)
Q Consensus 259 l~~i---------------l~~l~~~~-----------------~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~ 306 (600)
...+ +...+... .....+ ...+..+...++++++.++-|+.|..+..
T Consensus 229 ~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld-~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 229 TNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD-PLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred hHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC-HHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 1111 11111000 001111 23567788888888888888878777666
Q ss_pred hHHhhcCCCCCCCCCcEEEE--eccChHH-H-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHH
Q 039283 307 SWRALSCPFGAGASGSKIVV--THRNQGV-A-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVK 382 (600)
Q Consensus 307 ~~~~l~~~l~~~~~gs~Ilv--TtR~~~v-~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~ 382 (600)
.|..+...+....+...+++ ||++... . ........+.+.+++.++.+.++.+.+.... ...+ .+....|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~-v~ls---~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKIN-VHLA---AGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHH
Confidence 78777766666555544555 5664321 1 1112335678999999999999998764321 1122 245556666
Q ss_pred hhcCchhHHHHHHhh
Q 039283 383 KCKGLPLAAKTLGGL 397 (600)
Q Consensus 383 ~~~GlPLai~~~~~~ 397 (600)
.+..-+-++..++.+
T Consensus 384 ys~~gRraln~L~~~ 398 (615)
T TIGR02903 384 YTIEGRKAVNILADV 398 (615)
T ss_pred CCCcHHHHHHHHHHH
Confidence 665557777766544
No 55
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=3.3e-06 Score=91.13 Aligned_cols=198 Identities=16% Similarity=0.191 Sum_probs=112.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|++..++.|.+++..+. -.+.+.++|+.|+||||+|+.+.+...- .-|.... +...-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C------~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINC------LNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcC------CCCCCCC-CCcccHHHHHHH
Confidence 358999999999999885432 3467889999999999999988764211 1121111 111111111111
Q ss_pred HHh-------hcCCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEec-cChHHH
Q 039283 264 NSI-------ASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTH-RNQGVA 334 (600)
Q Consensus 264 ~~l-------~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~~~v~ 334 (600)
... .........+...+...+... ..+++-++|+|+++..+...+..++..+......+.+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 110 000000111122222211110 12334479999998877777777777776554556665555 333332
Q ss_pred -hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHHhh
Q 039283 335 -ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLGGL 397 (600)
Q Consensus 335 -~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~~~ 397 (600)
........+++.+++.++....+...+...+. ..+ .+.+..|++.++|.+. |+..+-.+
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi-~Is---~eal~~La~lS~GdlR~AlnlLekL 224 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKEKI-KIE---DNAIDKIADLADGSLRDGLSILDQL 224 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 22334568999999999999888876533221 122 2557789999999764 55555443
No 56
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.48 E-value=2.8e-06 Score=82.39 Aligned_cols=153 Identities=18% Similarity=0.119 Sum_probs=89.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
....+.|+|++|+|||+||+.+++... ... ....+++..... .. + ...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~-~~~~~i~~~~~~------~~----~-------------------~~~- 88 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGG-RNARYLDAASPL------LA----F-------------------DFD- 88 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCC-CcEEEEehHHhH------HH----H-------------------hhc-
Confidence 346789999999999999999987432 111 233444433210 00 0 011
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCC-CCCc-EEEEeccChHHHh--------hcCccceeecCCCCHHHHHHHHHH
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAG-ASGS-KIVVTHRNQGVAE--------TMRAVSTKTLKELSDDDCLRVLIQ 359 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~IlvTtR~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf~~ 359 (600)
...-+||+||+...+...-..+...+... ..+. .+|+|++...... .+.....+.+.+++.++-..++.+
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 23347899999654433333343333221 1233 4667766533221 122236889999999887777766
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh
Q 039283 360 HSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 398 (600)
Q Consensus 360 ~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L 398 (600)
.+.... ...+ ++....|++.+.|++..+..+...+
T Consensus 169 ~~~~~~-v~l~---~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAERG-LQLA---DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 432211 1222 3677888889999999888777665
No 57
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.47 E-value=3.3e-06 Score=91.60 Aligned_cols=183 Identities=16% Similarity=0.171 Sum_probs=111.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc-------------------cCCce
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR-------------------HFQIK 244 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~-------------------~F~~~ 244 (600)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+........ .|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 358999999999999986432 234578999999999999998876421110 11112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCC
Q 039283 245 AWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGAS 320 (600)
Q Consensus 245 ~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~ 320 (600)
++++.+.. ...++..+.+... ..+++-++|+|+++..+....+.++..+.....
T Consensus 91 ~ei~~~~~----------------------~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~ 148 (527)
T PRK14969 91 IEVDAASN----------------------TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPE 148 (527)
T ss_pred eEeecccc----------------------CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCC
Confidence 22221111 1122222211111 135667999999988877777777777766555
Q ss_pred CcEEEEeccCh-HHH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHHhh
Q 039283 321 GSKIVVTHRNQ-GVA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLGGL 397 (600)
Q Consensus 321 gs~IlvTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~~~ 397 (600)
.+.+|++|.+. .+. +.......+++.+++.++....+.+.+...+. .. ..+.+..|++.++|.+- |+..+-.+
T Consensus 149 ~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi-~~---~~~al~~la~~s~Gslr~al~lldqa 224 (527)
T PRK14969 149 HVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENI-PF---DATALQLLARAAAGSMRDALSLLDQA 224 (527)
T ss_pred CEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 66666655443 222 11223468899999999999888776532221 11 22556788999999875 44444333
No 58
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.45 E-value=3.1e-07 Score=89.36 Aligned_cols=91 Identities=19% Similarity=0.192 Sum_probs=62.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC--CCHHHHHHHHHHHhhcCCCCCcc-----cHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED--FDVFTVSKSILNSIASDQCTDKD-----DLNLLQE 282 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~l~~il~~l~~~~~~~~~-----~~~~l~~ 282 (600)
.-..++|+|++|+|||||++.++++.... +|+..+|+.+... .++.++++.+...+-......+. -.....+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44689999999999999999999875444 8999999997766 78999999884433222211111 1112222
Q ss_pred HHHHH-hCCCcEEEEEecCC
Q 039283 283 KLKKQ-LSGKKFLLVLDDVW 301 (600)
Q Consensus 283 ~l~~~-L~~k~~LlVlDdv~ 301 (600)
..... -.+++++|++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 24899999999994
No 59
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.43 E-value=5.4e-06 Score=90.65 Aligned_cols=199 Identities=16% Similarity=0.165 Sum_probs=114.9
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCc--eEEEEeCCCCCHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQI--KAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~--~~wv~vs~~~~~~~~l~~ 261 (600)
.+++|.+..++.|.+++..+. -...+.++|+.|+||||+|+.+.+.......... ..+-.+ ..-...+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c----g~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC----GVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC----cccHHHHH
Confidence 458999999999999996442 3457889999999999999988764321111100 000000 11111112
Q ss_pred HHHHhhc-------CCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEec-cChH
Q 039283 262 ILNSIAS-------DQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTH-RNQG 332 (600)
Q Consensus 262 il~~l~~-------~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~~~ 332 (600)
|...-.. .......+..++.+.+... ..+++-++|+|+++..+....+.++..+......+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 2211100 0000111222222222111 12455589999998877777778877776655667776555 3333
Q ss_pred HH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 333 VA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 333 v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
+. ........+.+.+++.++....+.+.+-.... ... .+.+..|++.++|.+.-+....
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi-~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGV-EVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 32 22234468999999999999988876643221 112 2667888999999986554433
No 60
>PRK08727 hypothetical protein; Validated
Probab=98.43 E-value=6.9e-06 Score=79.79 Aligned_cols=150 Identities=15% Similarity=0.129 Sum_probs=88.3
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
..+.|+|++|+|||+|++.+++.. ......+.++++.+ ....+. ..+.. + .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~--~~~~~~~~y~~~~~------~~~~~~------------------~~~~~-l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAA--EQAGRSSAYLPLQA------AAGRLR------------------DALEA-L-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEeHHH------hhhhHH------------------HHHHH-H-hc
Confidence 459999999999999999998743 23333556665322 111110 11111 1 13
Q ss_pred cEEEEEecCCCCC-hhhHHh-hcCCCCC-CCCCcEEEEeccCh---------HHHhhcCccceeecCCCCHHHHHHHHHH
Q 039283 292 KFLLVLDDVWNEN-YNSWRA-LSCPFGA-GASGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLRVLIQ 359 (600)
Q Consensus 292 ~~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 359 (600)
.-+|||||+.... ...|.. +...+.. ...|..||+|++.. .+...+.....+++.+++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3589999996432 122322 2222221 12356799999853 1222222346889999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHH
Q 039283 360 HSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 393 (600)
Q Consensus 360 ~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~ 393 (600)
.+.... ...+ .+....|++.++|-.-.+..
T Consensus 174 ~a~~~~-l~l~---~e~~~~La~~~~rd~r~~l~ 203 (233)
T PRK08727 174 RAQRRG-LALD---EAAIDWLLTHGERELAGLVA 203 (233)
T ss_pred HHHHcC-CCCC---HHHHHHHHHhCCCCHHHHHH
Confidence 764322 1222 36677888888877665533
No 61
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=4.2e-06 Score=88.03 Aligned_cols=200 Identities=14% Similarity=0.145 Sum_probs=111.9
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEE-eCCCCCHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTC-VSEDFDVFTVSKSI 262 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~l~~i 262 (600)
.+++|.+.-++.|..++.++. -...+.++|++|+||||+|..+.+...-...+....|.. ...+...-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 358999998999999885432 234588999999999999988876432211111111110 00011111111111
Q ss_pred HHHhhcC----CCCCcccHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEec-cChH
Q 039283 263 LNSIASD----QCTDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTH-RNQG 332 (600)
Q Consensus 263 l~~l~~~----~~~~~~~~~~l~~~l~~~L-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~~~ 332 (600)
....... ........++..+. .+.+ .+++-++|+|+++..+...++.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~l-~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRLL-RENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHHH-HHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 1110000 00011112333322 2222 2455688999998777677888877776655566666555 4333
Q ss_pred HHhh-cCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHH
Q 039283 333 VAET-MRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 393 (600)
Q Consensus 333 v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~ 393 (600)
+... ......+++.+++.++....+...+-.... . -..+.+..|++.++|.+--+..
T Consensus 170 l~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~-~---i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 170 IPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI-S---VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred hHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC-C---CCHHHHHHHHHHcCCCHHHHHH
Confidence 3322 123357889999999998888776532211 1 1236788899999998854433
No 62
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.41 E-value=8.4e-06 Score=80.02 Aligned_cols=199 Identities=17% Similarity=0.129 Sum_probs=121.5
Q ss_pred chHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccC----CceEEEEeCCCCCHHHHHHHHHHHh
Q 039283 191 KDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF----QIKAWTCVSEDFDVFTVSKSILNSI 266 (600)
Q Consensus 191 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~l~~il~~l 266 (600)
.-+++|.++|..+. ....+.+.|+|.+|.|||++++.+....-....- -.++.|.....++...+...|+.++
T Consensus 44 ~~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~l 120 (302)
T PF05621_consen 44 EALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEAL 120 (302)
T ss_pred HHHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHh
Confidence 34566777675543 4667889999999999999999998643211111 1355677788889999999999999
Q ss_pred hcCCCCCcccHHHHHHHHHHHhCC-CcEEEEEecCCCCC------hhhHHhhcCCCCCCCCCcEEEEeccChHHHhh---
Q 039283 267 ASDQCTDKDDLNLLQEKLKKQLSG-KKFLLVLDDVWNEN------YNSWRALSCPFGAGASGSKIVVTHRNQGVAET--- 336 (600)
Q Consensus 267 ~~~~~~~~~~~~~l~~~l~~~L~~-k~~LlVlDdv~~~~------~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~--- 336 (600)
+.+.. .......+.......++. +.=+||+|.+++.- ....-..+..|.+.-.=+-|.+-|+...-+-.
T Consensus 121 gaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~ 199 (302)
T PF05621_consen 121 GAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDP 199 (302)
T ss_pred CcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCH
Confidence 98865 444555556555566654 44589999997621 11122223333333334556676665422211
Q ss_pred --cCccceeecCCCCHHHH-HHHHHHhh--cCCCCCCCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 337 --MRAVSTKTLKELSDDDC-LRVLIQHS--LGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 337 --~~~~~~~~l~~L~~~ea-~~Lf~~~a--~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
...+..+.|+....++- ..|+.... .+-.. ...-...++++.|...++|+.--+..+
T Consensus 200 QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~l~~l 261 (302)
T PF05621_consen 200 QLASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGELSRL 261 (302)
T ss_pred HHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHHHHHH
Confidence 12345666776665444 44443321 12111 122234688999999999997555443
No 63
>PF14516 AAA_35: AAA-like domain
Probab=98.41 E-value=9.4e-05 Score=75.80 Aligned_cols=202 Identities=13% Similarity=0.101 Sum_probs=117.6
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC-----CCHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED-----FDVFT 257 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~~ 257 (600)
.+..|.|...-+++.+.+..++ ..+.|.|+..+|||+|...+.+..+.. .+ ..+++++... .+...
T Consensus 10 ~~~Yi~R~~~e~~~~~~i~~~G-------~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 10 SPFYIERPPAEQECYQEIVQPG-------SYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCcccCchHHHHHHHHHHhcCC-------CEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHH
Confidence 3446789866677777775433 589999999999999998888754332 23 4557776542 24555
Q ss_pred HHHHHHHHhhcCCCC----------CcccHHHHHHHHHHHh---CCCcEEEEEecCCCCCh------hhHHhhcCCCCCC
Q 039283 258 VSKSILNSIASDQCT----------DKDDLNLLQEKLKKQL---SGKKFLLVLDDVWNENY------NSWRALSCPFGAG 318 (600)
Q Consensus 258 ~l~~il~~l~~~~~~----------~~~~~~~l~~~l~~~L---~~k~~LlVlDdv~~~~~------~~~~~l~~~l~~~ 318 (600)
.++.++..+...-.. ...........+.+.+ .+++.+|+||+++..-. +-+..++......
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 666655554432210 0112223333444432 26899999999954211 1111121111110
Q ss_pred C-----CCc-EEEEeccChHHHhhc-----CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCc
Q 039283 319 A-----SGS-KIVVTHRNQGVAETM-----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 387 (600)
Q Consensus 319 ~-----~gs-~IlvTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~Gl 387 (600)
. ..- -|++.+......... .-...+.|.+++.+|...|+.+.... ..+ ...++|...+||+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~-----~~~---~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE-----FSQ---EQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc-----CCH---HHHHHHHHHHCCC
Confidence 0 111 222222111111111 11257889999999999998876422 111 3388999999999
Q ss_pred hhHHHHHHhhhcCC
Q 039283 388 PLAAKTLGGLLRGK 401 (600)
Q Consensus 388 PLai~~~~~~L~~~ 401 (600)
|.-+..++..+...
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999765
No 64
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=9.3e-06 Score=88.14 Aligned_cols=199 Identities=17% Similarity=0.181 Sum_probs=115.5
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.+......... ...++.-...+.+..
T Consensus 17 dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~-------~~pCg~C~sC~~i~~ 84 (624)
T PRK14959 17 EVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT-------GEPCNTCEQCRKVTQ 84 (624)
T ss_pred HhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCC-------CCCCcccHHHHHHhc
Confidence 57899888888888885432 246788999999999999998876432111000 001111111111111
Q ss_pred Hhh-------cCCCCCcccHHHHHHHHHH-HhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccC-hHHHh
Q 039283 265 SIA-------SDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRN-QGVAE 335 (600)
Q Consensus 265 ~l~-------~~~~~~~~~~~~l~~~l~~-~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v~~ 335 (600)
... ........+...+.+.+.. -..+++-+||+|+++..+...++.++..+........+|++|.+ ..+..
T Consensus 85 g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~ 164 (624)
T PRK14959 85 GMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPV 164 (624)
T ss_pred CCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhH
Confidence 100 0000011111222222211 12356679999999888777778887777654445556665544 33332
Q ss_pred -hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch-hHHHHHHhhhc
Q 039283 336 -TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP-LAAKTLGGLLR 399 (600)
Q Consensus 336 -~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP-Lai~~~~~~L~ 399 (600)
.......+++.+++.++....+.+.+..... .. ..+.+..|++.++|.+ .|+..+..++.
T Consensus 165 TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi-~i---d~eal~lIA~~s~GdlR~Al~lLeqll~ 226 (624)
T PRK14959 165 TIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV-DY---DPAAVRLIARRAAGSVRDSMSLLGQVLA 226 (624)
T ss_pred HHHhhhhccccCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2233467899999999999888876543221 12 2366788999999965 67777766553
No 65
>PRK09087 hypothetical protein; Validated
Probab=98.38 E-value=8.6e-06 Score=78.52 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=87.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
.+.+.|+|++|+|||+|++.++... ...+++.. .+...++. .+.+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~-------~~~~i~~~------~~~~~~~~----------------------~~~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKS-------DALLIHPN------EIGSDAAN----------------------AAAE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhc-------CCEEecHH------HcchHHHH----------------------hhhc
Confidence 3578999999999999999887632 11233321 11111111 1111
Q ss_pred CcEEEEEecCCCC--ChhhHHhhcCCCCCCCCCcEEEEeccCh---------HHHhhcCccceeecCCCCHHHHHHHHHH
Q 039283 291 KKFLLVLDDVWNE--NYNSWRALSCPFGAGASGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLRVLIQ 359 (600)
Q Consensus 291 k~~LlVlDdv~~~--~~~~~~~l~~~l~~~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 359 (600)
-+|++||+... +...+-.+...+.. .|..||+|++.. .....+.....+++++++.++-.+++.+
T Consensus 89 --~~l~iDDi~~~~~~~~~lf~l~n~~~~--~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 89 --GPVLIEDIDAGGFDETGLFHLINSVRQ--AGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred --CeEEEECCCCCCCCHHHHHHHHHHHHh--CCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHH
Confidence 27888999542 22233333332222 366788888742 2333334557899999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhh
Q 039283 360 HSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGL 397 (600)
Q Consensus 360 ~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~ 397 (600)
.+.... ...+ +++..-|++.+.|..-++..+...
T Consensus 165 ~~~~~~-~~l~---~ev~~~La~~~~r~~~~l~~~l~~ 198 (226)
T PRK09087 165 LFADRQ-LYVD---PHVVYYLVSRMERSLFAAQTIVDR 198 (226)
T ss_pred HHHHcC-CCCC---HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 874421 1222 367788888888888777654433
No 66
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.38 E-value=9.8e-06 Score=91.67 Aligned_cols=198 Identities=15% Similarity=0.102 Sum_probs=114.4
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
++||.+..++.|..++..+. -...+.++|+.|+||||+|+.+.+...-....... .++.+ ...+.|..
T Consensus 16 eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C----~sC~~~~~ 83 (824)
T PRK07764 16 EVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGEC----DSCVALAP 83 (824)
T ss_pred HhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCccc----HHHHHHHc
Confidence 58999999999999986432 23467899999999999999887643211111000 00000 00111110
Q ss_pred H---------hhcCCCCCcccHHHHHHHHH-HHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccC-hHH
Q 039283 265 S---------IASDQCTDKDDLNLLQEKLK-KQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRN-QGV 333 (600)
Q Consensus 265 ~---------l~~~~~~~~~~~~~l~~~l~-~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v 333 (600)
. +........++..++.+.+. .-..++.-++|||+++..+...++.|+..+..-...+.+|++|.+ ..+
T Consensus 84 g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kL 163 (824)
T PRK07764 84 GGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKV 163 (824)
T ss_pred CCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0 00000001112222222111 112355668999999988888888888888776666766665543 333
Q ss_pred Hh-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHHhhh
Q 039283 334 AE-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLGGLL 398 (600)
Q Consensus 334 ~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~~~L 398 (600)
.. .......|.+..++.++..+.+.+..-..+. .. ..+....|++.++|.+. ++..+-.++
T Consensus 164 l~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-~i---d~eal~lLa~~sgGdlR~Al~eLEKLi 226 (824)
T PRK07764 164 IGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-PV---EPGVLPLVIRAGGGSVRDSLSVLDQLL 226 (824)
T ss_pred hHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32 2334578999999999998888775432221 11 22456788999999884 344443333
No 67
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.35 E-value=1.3e-05 Score=77.94 Aligned_cols=156 Identities=14% Similarity=0.132 Sum_probs=91.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
...+.|+|++|+|||+|++.+++... ..-..+.++++..... ......+.+. .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~--~~~~~v~y~~~~~~~~---------------------~~~~~~~~~~----~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS--QRGRAVGYVPLDKRAW---------------------FVPEVLEGME----Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEEHHHHhh---------------------hhHHHHHHhh----h
Confidence 35789999999999999999887432 2223445665532100 0011111111 1
Q ss_pred CcEEEEEecCCCCC-hhhHHhh-cCCCCCC-CCC-cEEEEeccChH---------HHhhcCccceeecCCCCHHHHHHHH
Q 039283 291 KKFLLVLDDVWNEN-YNSWRAL-SCPFGAG-ASG-SKIVVTHRNQG---------VAETMRAVSTKTLKELSDDDCLRVL 357 (600)
Q Consensus 291 k~~LlVlDdv~~~~-~~~~~~l-~~~l~~~-~~g-s~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf 357 (600)
--+|++||+.... ...|... ...+... ..| .++|+||+... +...+....++.+.+++.++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 2378999996432 1234332 1222211 123 47889888542 2233334578999999999999999
Q ss_pred HHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh
Q 039283 358 IQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 398 (600)
Q Consensus 358 ~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L 398 (600)
.+.+.... ...+ +++..-|++.+.|..-.+..+-..+
T Consensus 177 ~~~a~~~~-~~l~---~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 177 QLRARLRG-FELP---EDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHcC-CCCC---HHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 87664321 1222 3778888899988876665554443
No 68
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.35 E-value=1.5e-05 Score=87.90 Aligned_cols=197 Identities=15% Similarity=0.147 Sum_probs=113.8
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+++|.+.-++.|..++.... -...+.++|+.|+||||+|+.+.+......... .....+.....+.+.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~------~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP------KGRPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccCHHHHHHh
Confidence 368999999999998885432 235678999999999999998876432111000 001111222233333
Q ss_pred HHhhcCC----CCCcccHHHH---HHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH
Q 039283 264 NSIASDQ----CTDKDDLNLL---QEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA 334 (600)
Q Consensus 264 ~~l~~~~----~~~~~~~~~l---~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~ 334 (600)
....... .......+++ .+.+... ..+++-++|+|+++..+....+.++..+......+.+|+++.+. .+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 2211100 0011122222 2222111 12456689999998777667777777666555566666665432 222
Q ss_pred h-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 335 E-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 335 ~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
. .......+.+.+++.++....+.+.+...+. ..+ .+.+..|++.++|.+..+....
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl-~i~---~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI-NLE---PGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2 1223467889999999999888776643221 122 2567889999999996554433
No 69
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=1.8e-05 Score=86.23 Aligned_cols=200 Identities=14% Similarity=0.102 Sum_probs=115.9
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+++|.+.-++.|..++.++. -...+.++|+.|+||||+|+.+.+...-..... +-.++.. ...+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C----~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVC----ESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCccccc----HHHHHhh
Confidence 358999999999999996432 234578999999999999998876422111000 0000000 1111111
Q ss_pred HH---------hhcCCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEecc-ChH
Q 039283 264 NS---------IASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHR-NQG 332 (600)
Q Consensus 264 ~~---------l~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR-~~~ 332 (600)
.. +........++..++.+.+... ..+++-++|+|+++..+....+.++..+......+.+|++|. ...
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000000112222222222211 124556899999998888888888888776655666665554 333
Q ss_pred HHh-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHHhhhc
Q 039283 333 VAE-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLGGLLR 399 (600)
Q Consensus 333 v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~~~L~ 399 (600)
+.. .......+.+.+++.++..+.+.+.+...+. ..+ .+.+..|++.++|.+- ++..+-.++.
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi-~i~---~~al~~Ia~~s~GdlR~aln~Ldql~~ 225 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV-VVD---DAVYPLVIRAGGGSPRDTLSVLDQLLA 225 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 332 2334578999999999998888776543221 112 2556778899999874 5555544443
No 70
>PRK05642 DNA replication initiation factor; Validated
Probab=98.32 E-value=1.5e-05 Score=77.41 Aligned_cols=156 Identities=21% Similarity=0.204 Sum_probs=92.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
...+.|+|++|+|||.|++.+++... ..-..++|++..+ +... . ..+.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~--~~~~~v~y~~~~~------~~~~---------------~----~~~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFE--QRGEPAVYLPLAE------LLDR---------------G----PELLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--hCCCcEEEeeHHH------HHhh---------------h----HHHHHhhhh
Confidence 36789999999999999999987432 2223456666432 1110 0 112222222
Q ss_pred CcEEEEEecCCCCC-hhhHHh-hcCCCCCC-CCCcEEEEeccChHHH---------hhcCccceeecCCCCHHHHHHHHH
Q 039283 291 KKFLLVLDDVWNEN-YNSWRA-LSCPFGAG-ASGSKIVVTHRNQGVA---------ETMRAVSTKTLKELSDDDCLRVLI 358 (600)
Q Consensus 291 k~~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~IlvTtR~~~v~---------~~~~~~~~~~l~~L~~~ea~~Lf~ 358 (600)
-. +||+||+.... ...|.. +...+... ..|..+|+|++..... ..+.....+++.+++.++-..++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 68899996331 124433 33333221 2466788888753211 112233678899999999999998
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh
Q 039283 359 QHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 398 (600)
Q Consensus 359 ~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L 398 (600)
+++.... ...+ +++..-|++.+.|..-.+..+-..|
T Consensus 177 ~ka~~~~-~~l~---~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 177 LRASRRG-LHLT---DEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 6654321 1222 3778888888888876665555444
No 71
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2.1e-05 Score=82.15 Aligned_cols=185 Identities=13% Similarity=0.180 Sum_probs=106.0
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhh------ccCCceE-EEEeCCCCCHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ------RHFQIKA-WTCVSEDFDVFT 257 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~------~~F~~~~-wv~vs~~~~~~~ 257 (600)
+++|.+..++.+.+++..+. -.+.+.++|++|+|||++|+.+.+..... ..|...+ -++.....+. +
T Consensus 18 ~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 91 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV-D 91 (367)
T ss_pred hcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-H
Confidence 57999999999999985432 34688899999999999999886632110 1111111 0110000000 1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEecc-ChHHH-h
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHR-NQGVA-E 335 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR-~~~v~-~ 335 (600)
....+++.+... -..+++-++|+|++.......+..+...+......+.+|++|. ...+. .
T Consensus 92 ~i~~l~~~~~~~-----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 92 DIRNLIDQVRIP-----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred HHHHHHHHHhhc-----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 111112111100 1124556899999976655566676655544334455555553 22222 1
Q ss_pred hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHHh
Q 039283 336 TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLGG 396 (600)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~~ 396 (600)
.......+++.+++.++....+...+...+. ..+ .+.+..|++.++|.+- ++..+-.
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~-~i~---~~al~~l~~~~~gdlr~~~~~lek 212 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGI-KFE---DDALHIIAQKADGALRDALSIFDR 212 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhCCCCHHHHHHHHHH
Confidence 1223457899999999999888876643221 122 2677888889998765 4444433
No 72
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.29 E-value=4e-05 Score=82.17 Aligned_cols=183 Identities=14% Similarity=0.132 Sum_probs=108.5
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc-------------------cCCceE
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR-------------------HFQIKA 245 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~-------------------~F~~~~ 245 (600)
.++|.+.-+..|.+++.... -...+.++|+.|+||||+|+.+........ .|...+
T Consensus 17 diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~ 91 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLI 91 (486)
T ss_pred HccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEE
Confidence 58899999999999995432 235667899999999999988876321000 011111
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEE
Q 039283 246 WTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKI 324 (600)
Q Consensus 246 wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 324 (600)
+++.+... ...+...+.+.+... ..+++-++|+|+++.......+.+...+....+.+.+
T Consensus 92 eidaas~~-------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~ 152 (486)
T PRK14953 92 EIDAASNR-------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIF 152 (486)
T ss_pred EEeCccCC-------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEE
Confidence 11111100 111122222222111 1356679999999877666677777666655445555
Q ss_pred EEec-cChHHHh-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 325 VVTH-RNQGVAE-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 325 lvTt-R~~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
|++| +...+.. .......+.+.+++.++....+.+.+-..+. .. ..+.+..|+..++|.+..+....
T Consensus 153 Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-~i---d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 153 ILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-EY---EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 5554 4333322 2223467899999999999888876543221 11 22557788889999876544443
No 73
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=3.1e-05 Score=85.47 Aligned_cols=195 Identities=15% Similarity=0.183 Sum_probs=111.4
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhcc-C---CceEE-EEeCCCCCHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH-F---QIKAW-TCVSEDFDVFTV 258 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~-F---~~~~w-v~vs~~~~~~~~ 258 (600)
..++|.+.-++.|..++..+. -...+.++|+.|+||||+|+.+....-.... . +|..- -+....+++.
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 358999999999999996432 3456789999999999999988763211110 0 00000 0000000000
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEE-EeccChHHHh-
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIV-VTHRNQGVAE- 335 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il-vTtR~~~v~~- 335 (600)
.+.........+..++.+.+... ..+++-++|+|+++......+..++..+......+.+| +|+....+..
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000000111222333322211 13566699999998877778888877776554555555 4544444432
Q ss_pred hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHH
Q 039283 336 TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLG 395 (600)
Q Consensus 336 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~ 395 (600)
.......+.+.+++.++....+...+...+. ... .+.+..|++.++|.+. |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~kegI-~id---~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKENI-SYE---KNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 2334578999999999999888775432221 111 2557789999999774 444443
No 74
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.27 E-value=1.2e-05 Score=92.11 Aligned_cols=183 Identities=16% Similarity=0.139 Sum_probs=96.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc----cCCceEE-EEeCCCCCHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR----HFQIKAW-TCVSEDFDVFTV 258 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~----~F~~~~w-v~vs~~~~~~~~ 258 (600)
..++||+.++.++++.|.... ...+.++|++|+||||+|+.+........ -....+| ++++.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l------ 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL------ 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh------
Confidence 468999999999999986542 34567999999999999999887431111 0122232 222210
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCCcEEEEEecCCCCC-------hhhHHhhcCCCCCCCCCcEEEEeccC
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNEN-------YNSWRALSCPFGAGASGSKIVVTHRN 330 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~IlvTtR~ 330 (600)
..+... ...-.+.+...+.+.- .+++.+|++|+++... ..+-..++.+.... ...++|-||..
T Consensus 255 -------~ag~~~-~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~-G~l~~IgaTT~ 325 (852)
T TIGR03345 255 -------QAGASV-KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR-GELRTIAATTW 325 (852)
T ss_pred -------hccccc-chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-CCeEEEEecCH
Confidence 000000 1111122222233222 2478999999996532 11111233222222 13456666655
Q ss_pred hHHHh-------hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCc
Q 039283 331 QGVAE-------TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 387 (600)
Q Consensus 331 ~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~Gl 387 (600)
.+... ....+..+.+.+++.++...++....-.-.....-.-..+....+++.+.+.
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 43211 1124578999999999999997543321111011111234455566666544
No 75
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.27 E-value=2.3e-05 Score=75.27 Aligned_cols=166 Identities=17% Similarity=0.196 Sum_probs=95.0
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
....+.|+|+.|+|||.|.+.+++.......-..+++++ ..+....+...+... .. ..+.+.+.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~~~~~~~~------~~----~~~~~~~~ 96 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREFADALRDG------EI----EEFKDRLR 96 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHHHHHHHTT------SH----HHHHHHHC
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHHHHHHHcc------cc----hhhhhhhh
Confidence 345689999999999999999998543222212344554 455666666665432 12 22333333
Q ss_pred CCcEEEEEecCCCCCh-hhHHh-hcCCCCCC-CCCcEEEEeccCh---------HHHhhcCccceeecCCCCHHHHHHHH
Q 039283 290 GKKFLLVLDDVWNENY-NSWRA-LSCPFGAG-ASGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLRVL 357 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~-~~~~~-l~~~l~~~-~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf 357 (600)
.-=+|+|||++.-.. ..|.. +...+... ..|.+||+|+... .+...+...-.+++.+++.++..+++
T Consensus 97 -~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il 175 (219)
T PF00308_consen 97 -SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRIL 175 (219)
T ss_dssp -TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHH
T ss_pred -cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHH
Confidence 234789999965322 22322 22222111 2466899999654 22223334568999999999999999
Q ss_pred HHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHh
Q 039283 358 IQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 396 (600)
Q Consensus 358 ~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~ 396 (600)
.+.+....- . -.++++.-|++.+.+..-.+.-+-.
T Consensus 176 ~~~a~~~~~-~---l~~~v~~~l~~~~~~~~r~L~~~l~ 210 (219)
T PF00308_consen 176 QKKAKERGI-E---LPEEVIEYLARRFRRDVRELEGALN 210 (219)
T ss_dssp HHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHHHH
T ss_pred HHHHHHhCC-C---CcHHHHHHHHHhhcCCHHHHHHHHH
Confidence 988754322 2 2347777788888777666654443
No 76
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.26 E-value=3.6e-05 Score=81.96 Aligned_cols=170 Identities=11% Similarity=0.078 Sum_probs=101.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
..-+.|+|..|+|||+|++.+.+.......-..+++++ ..+++..+...+.... ...+.+.+.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~--------~~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH--------KEIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh--------hHHHHHHHHhc-
Confidence 35689999999999999999987432222112333443 4566677776664311 11223333333
Q ss_pred CcEEEEEecCCCCC--hhhHHhhcCCCCCC-CCCcEEEEeccChH---------HHhhcCccceeecCCCCHHHHHHHHH
Q 039283 291 KKFLLVLDDVWNEN--YNSWRALSCPFGAG-ASGSKIVVTHRNQG---------VAETMRAVSTKTLKELSDDDCLRVLI 358 (600)
Q Consensus 291 k~~LlVlDdv~~~~--~~~~~~l~~~l~~~-~~gs~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~Lf~ 358 (600)
+.-+|||||+.... ....+.+...+... ..|..||+|+.... +...+...-.+.+.+++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 34488999996533 11223333333221 23456888876431 22222334578899999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhh
Q 039283 359 QHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGL 397 (600)
Q Consensus 359 ~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~ 397 (600)
+.+-..+. . ..-.+++..-|++.+.|.|-.+.-+...
T Consensus 286 ~~~~~~gl-~-~~l~~evl~~Ia~~~~gd~R~L~gaL~~ 322 (450)
T PRK14087 286 KEIKNQNI-K-QEVTEEAINFISNYYSDDVRKIKGSVSR 322 (450)
T ss_pred HHHHhcCC-C-CCCCHHHHHHHHHccCCCHHHHHHHHHH
Confidence 88743221 0 0122478889999999999877665543
No 77
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.26 E-value=3.3e-05 Score=78.98 Aligned_cols=148 Identities=16% Similarity=0.155 Sum_probs=84.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+++|.+...+.+.+++... .-..++.++|++|+|||++|+.+++.. .. ....++.+. .. .+.++..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~--~~---~~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV--GA---EVLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh--Cc---cceEeccCc-cc-HHHHHHHH
Confidence 45899999999999998643 234677789999999999999998742 11 123344433 11 11111111
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCC-ChhhHHhhcCCCCCCCCCcEEEEeccChHHH--hhcCcc
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE-NYNSWRALSCPFGAGASGSKIVVTHRNQGVA--ETMRAV 340 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~--~~~~~~ 340 (600)
..+.... .+.+.+-+||+||++.. .......+...+.....++.+|+||...... ......
T Consensus 89 ~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 01134568999999765 2223333433344444677888888654211 111233
Q ss_pred ceeecCCCCHHHHHHHHHH
Q 039283 341 STKTLKELSDDDCLRVLIQ 359 (600)
Q Consensus 341 ~~~~l~~L~~~ea~~Lf~~ 359 (600)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 4677777777777666543
No 78
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.25 E-value=2.5e-06 Score=88.91 Aligned_cols=181 Identities=15% Similarity=0.142 Sum_probs=99.6
Q ss_pred CCCccccccchHHHHHHHHhcCCCC-------CCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC
Q 039283 182 NEDEVYGREKDKEAIVELLLRDDLR-------ADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD 254 (600)
Q Consensus 182 ~~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 254 (600)
....+.|++..+++|.+.+...-.. +-..++-+.|+|++|+|||+||+.+++.. ...| +.+.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l--~~~~-----~~v~---- 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NATF-----IRVV---- 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC--CCCE-----Eecc----
Confidence 3456899999999999887432100 11234569999999999999999998732 2222 2221
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hh---hHHhhcCCCCC--C
Q 039283 255 VFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------YN---SWRALSCPFGA--G 318 (600)
Q Consensus 255 ~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~ 318 (600)
...+ ..... ..........+...-...+.+|+||+++... .. .+..+...+.. .
T Consensus 189 ~~~l----~~~~~------g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 189 GSEL----VRKYI------GEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred hHHH----HHHhh------hHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 11110 0111112222222223567899999985421 11 12222222221 1
Q ss_pred CCCcEEEEeccChHHHh-hc----CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 319 ASGSKIVVTHRNQGVAE-TM----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 319 ~~gs~IlvTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
..+..||.||....... .+ .-...+.+...+.++..++|..+...... ...-. ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 24677888887543211 11 11356889999999999999887644321 11112 355667777654
No 79
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.25 E-value=3.6e-06 Score=85.57 Aligned_cols=101 Identities=18% Similarity=0.234 Sum_probs=65.7
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC--CHHHHHHHHHHHhhcCCCC
Q 039283 195 AIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF--DVFTVSKSILNSIASDQCT 272 (600)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~l~~il~~l~~~~~~ 272 (600)
++++++..- +.-+-..|+|++|+||||||+.++++.... +|+..+||.+.+.. .+.++.+.+...+-.....
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 455655433 344678999999999999999999976554 89999999998887 6677777776322222211
Q ss_pred CcccHH-----HHHHHHHHH-hCCCcEEEEEecCC
Q 039283 273 DKDDLN-----LLQEKLKKQ-LSGKKFLLVLDDVW 301 (600)
Q Consensus 273 ~~~~~~-----~l~~~l~~~-L~~k~~LlVlDdv~ 301 (600)
...... ...+.-... -.++++||++|++.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 111111 111111111 25799999999994
No 80
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.25 E-value=5e-05 Score=77.65 Aligned_cols=213 Identities=16% Similarity=0.128 Sum_probs=127.9
Q ss_pred CCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHH
Q 039283 182 NEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 182 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 261 (600)
.++.++||+.|++.+.+++...- ..+..+.+-|.|-+|.|||.+...++.+......-..++.+++..-.....++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hl--e~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHL--ELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhh--hcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 45679999999999999997654 3456788999999999999999988875433222235577777766678888888
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHHhCC--CcEEEEEecCCCCChhhHHhhcCCCCC-CCCCcEEEEeccChHH-----
Q 039283 262 ILNSIASDQCTDKDDLNLLQEKLKKQLSG--KKFLLVLDDVWNENYNSWRALSCPFGA-GASGSKIVVTHRNQGV----- 333 (600)
Q Consensus 262 il~~l~~~~~~~~~~~~~l~~~l~~~L~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~IlvTtR~~~v----- 333 (600)
|...+.......... .+.++.+...... +.+|+|+|.++......-..+...|.+ .-+++++|+.--...+
T Consensus 226 I~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR 304 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDR 304 (529)
T ss_pred HHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHH
Confidence 888873222111222 4455555555543 368999999853222222223222322 1245665544322111
Q ss_pred ----Hhh--cCccceeecCCCCHHHHHHHHHHhhcCCCCC-CCChhHHHHHHHHHHhhcCchhHHHHHHhh
Q 039283 334 ----AET--MRAVSTKTLKELSDDDCLRVLIQHSLGARDF-NIPQSLKEVAEKIVKKCKGLPLAAKTLGGL 397 (600)
Q Consensus 334 ----~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~-~~~~~l~~~~~~I~~~~~GlPLai~~~~~~ 397 (600)
... -.....+...|-+.++-.++|.++....... ..+..++-.|++++.-.|.+--|+-+.-+.
T Consensus 305 ~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~a 375 (529)
T KOG2227|consen 305 FLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRA 375 (529)
T ss_pred HhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 011 1134677889999999999999887543221 222334444444444444455555444433
No 81
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.8e-05 Score=84.29 Aligned_cols=203 Identities=15% Similarity=0.152 Sum_probs=112.6
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEE-eCCCCCHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTC-VSEDFDVFTVSKSI 262 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~-vs~~~~~~~~l~~i 262 (600)
..++|.+.-+..|.+++..+. -...+.++|+.|+||||+|+.+.+............|.. ...+...-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 358999999999999885432 235588999999999999988876432211111011110 00111111111111
Q ss_pred HHHhhcC----CCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEec-cChHH
Q 039283 263 LNSIASD----QCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTH-RNQGV 333 (600)
Q Consensus 263 l~~l~~~----~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~~~v 333 (600)
...-... ........+++.+.+... ..+.+-++|+|+++..+....+.+...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1100000 000111133333222221 23455588999998877667777877776655556555544 43333
Q ss_pred Hh-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHH
Q 039283 334 AE-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLG 395 (600)
Q Consensus 334 ~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~ 395 (600)
.. .......+++.+++.++....+.+.+...+. .. ..+.+..|++.++|..- ++..+-
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi-~I---~~eal~~La~~s~Gdlr~al~eLe 230 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAEGI-QI---DADALQLIARKAQGSMRDAQSILD 230 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHhCCCHHHHHHHHH
Confidence 32 2334578999999999988888765532211 11 22667889999999664 444443
No 82
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.23 E-value=1.1e-05 Score=91.67 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=86.0
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc---cC-CceEEEEeCCCCCHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR---HF-QIKAWTCVSEDFDVFTVS 259 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~---~F-~~~~wv~vs~~~~~~~~l 259 (600)
++++||+++++++.+.|... ...-+.++|++|+|||++|+.++....... .+ ...+|. +. ..
T Consensus 182 ~~~igr~~ei~~~~~~L~~~------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~-~~----~~--- 247 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRR------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS-LD----MG--- 247 (731)
T ss_pred CcccCcHHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE-ec----HH---
Confidence 35899999999999998544 234568999999999999999887432111 11 233432 11 11
Q ss_pred HHHHHHhhcCCCCCcccHHH-HHHHHHHHhCCCcEEEEEecCCCCC--------hhhHHh-hcCCCCCCCCCcEEEEecc
Q 039283 260 KSILNSIASDQCTDKDDLNL-LQEKLKKQLSGKKFLLVLDDVWNEN--------YNSWRA-LSCPFGAGASGSKIVVTHR 329 (600)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~-l~~~l~~~L~~k~~LlVlDdv~~~~--------~~~~~~-l~~~l~~~~~gs~IlvTtR 329 (600)
.++. +.. ...+.+. +...+.+.-+.++.+|++|+++... ...... +...+.. + ..++|-+|.
T Consensus 248 -~l~a---~~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~-g-~i~~IgaTt 319 (731)
T TIGR02639 248 -SLLA---GTK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS-G-KLRCIGSTT 319 (731)
T ss_pred -HHhh---hcc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC-C-CeEEEEecC
Confidence 1111 000 0112222 2222322223468999999996321 011122 3332322 1 234554444
Q ss_pred ChHHHh-------hcCccceeecCCCCHHHHHHHHHHhh
Q 039283 330 NQGVAE-------TMRAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 330 ~~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
..+... ....+..+.+.+++.++..+++....
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 322211 11235689999999999999998654
No 83
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=3.9e-05 Score=82.32 Aligned_cols=194 Identities=15% Similarity=0.165 Sum_probs=112.0
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+++|-+.-++.|...+..+ .-..+..++|+.|+||||+|+.+.+..--....+. .+...-.....+.
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~-------~pC~~C~~C~~~~ 81 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS-------TPCDTCIQCQSAL 81 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC-------CCCcccHHHHHHh
Confidence 35899999999999988543 23456689999999999999887763211000000 0000000000000
Q ss_pred HHhhc-----CCCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HH
Q 039283 264 NSIAS-----DQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GV 333 (600)
Q Consensus 264 ~~l~~-----~~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v 333 (600)
..... ... .....+.+.+.+... ..+++-++|+|+++..+....+.++..+......+.+|++|.+. .+
T Consensus 82 ~~~h~dv~eldaa-s~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL 160 (535)
T PRK08451 82 ENRHIDIIEMDAA-SNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160 (535)
T ss_pred hcCCCeEEEeccc-cccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhC
Confidence 00000 000 001122222222210 11455689999998888777888877776655667777777553 11
Q ss_pred H-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 334 A-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 334 ~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
. ........+++.+++.++....+.+.+...+. .. ..+.+..|++.++|.+.-+...
T Consensus 161 ~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi-~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 161 PATILSRTQHFRFKQIPQNSIISHLKTILEKEGV-SY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred chHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 1 12223468999999999999988766543221 11 2366788999999999555444
No 84
>CHL00181 cbbX CbbX; Provisional
Probab=98.22 E-value=9.7e-05 Score=73.89 Aligned_cols=136 Identities=13% Similarity=0.059 Sum_probs=75.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
...+.++|++|+|||++|+.++........-...-|+.++. .+ +...+.+.. .......+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~------~~~~~~~l~~a--- 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT------APKTKEVLKKA--- 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc------hHHHHHHHHHc---
Confidence 34588999999999999999976432212112223555441 12 222222111 11122233332
Q ss_pred CcEEEEEecCCCC---------ChhhHHhhcCCCCCCCCCcEEEEeccChHHHhhc-------C-ccceeecCCCCHHHH
Q 039283 291 KKFLLVLDDVWNE---------NYNSWRALSCPFGAGASGSKIVVTHRNQGVAETM-------R-AVSTKTLKELSDDDC 353 (600)
Q Consensus 291 k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~-------~-~~~~~~l~~L~~~ea 353 (600)
..-+|+||++... .......+...+.....+.+||+++....+.... . -...+.+++++.++.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2359999999642 1222333444444444566777777654332211 1 125788999999999
Q ss_pred HHHHHHhhcC
Q 039283 354 LRVLIQHSLG 363 (600)
Q Consensus 354 ~~Lf~~~a~~ 363 (600)
.+++...+..
T Consensus 202 ~~I~~~~l~~ 211 (287)
T CHL00181 202 LQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHH
Confidence 9998877643
No 85
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=3.8e-05 Score=81.76 Aligned_cols=187 Identities=14% Similarity=0.152 Sum_probs=109.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhcc----CCce--------------E
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH----FQIK--------------A 245 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~----F~~~--------------~ 245 (600)
.+++|.+..+..|.+++..+. -...+.++|+.|+||||+|+.+.+...-... -.|. -
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 358999999999999985432 2356889999999999999888763211100 0000 0
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEE
Q 039283 246 WTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKI 324 (600)
Q Consensus 246 wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~-~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 324 (600)
|+.+... ......+..++.+.+.. ...+++-++|+|+++.......+.+...+......+.+
T Consensus 92 ~~~i~g~-----------------~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 92 VLEIDGA-----------------SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred eEEeecc-----------------ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 1111100 00011122222222211 11256678999999776666666677676665556666
Q ss_pred EEeccCh-HHHh-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHHh
Q 039283 325 VVTHRNQ-GVAE-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLGG 396 (600)
Q Consensus 325 lvTtR~~-~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~~ 396 (600)
|++|.+. .+.. .......+++.+++.++....+.+.+-..+. .. ..+.+..|++.++|.+- |+..+-.
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~-~i---~~~al~~L~~~s~gdlr~a~~~Lek 225 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGI-ET---SREALLPIARAAQGSLRDAESLYDY 225 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 6666432 2221 1223467999999999998888776532211 11 23567889999999764 4444433
No 86
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.21 E-value=3e-05 Score=76.82 Aligned_cols=161 Identities=13% Similarity=0.136 Sum_probs=83.7
Q ss_pred ccccccchHHHHHHHHhc---------CCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCH
Q 039283 185 EVYGREKDKEAIVELLLR---------DDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDV 255 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~---------~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 255 (600)
.++|.+..+++|.+.... .+....+....+.++|++|+||||+|+.++.............++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 378887777666543211 11112345567899999999999999999764311111122223333221
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC--------hhhHHhhcCCCCCCCCCcEEEEe
Q 039283 256 FTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN--------YNSWRALSCPFGAGASGSKIVVT 327 (600)
Q Consensus 256 ~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IlvT 327 (600)
++ ..... ..........+... ...+|++|+++... ....+.+...+........++++
T Consensus 84 -~l----~~~~~------g~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 -DL----VGEYI------GHTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred -Hh----hhhhc------cchHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 11 11110 11112222223222 23489999996421 12334454444444344456666
Q ss_pred ccChHHHh-------hcCc-cceeecCCCCHHHHHHHHHHhhc
Q 039283 328 HRNQGVAE-------TMRA-VSTKTLKELSDDDCLRVLIQHSL 362 (600)
Q Consensus 328 tR~~~v~~-------~~~~-~~~~~l~~L~~~ea~~Lf~~~a~ 362 (600)
+....... .... ...+.+++++.++-.+++.+.+.
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 54432211 1112 24688999999999999987764
No 87
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=5.6e-05 Score=83.39 Aligned_cols=176 Identities=15% Similarity=0.160 Sum_probs=109.5
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhh---------------------ccCC
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ---------------------RHFQ 242 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~---------------------~~F~ 242 (600)
..++|.+..++.|..++..+. -...+.++|+.|+||||+|+.+....... .+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 358999999999999986432 34568899999999999998876632110 1121
Q ss_pred ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCC
Q 039283 243 IKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAG 318 (600)
Q Consensus 243 ~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 318 (600)
...++.+.. ...++..+.+.+. ..+++=++|+|+++..+...++.++..+...
T Consensus 92 -~~~ld~~~~----------------------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep 148 (614)
T PRK14971 92 -IHELDAASN----------------------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP 148 (614)
T ss_pred -eEEeccccc----------------------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC
Confidence 111111111 1122222222111 1234558899999888777788888777765
Q ss_pred CCCcEEEEec-cChHHHh-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHH
Q 039283 319 ASGSKIVVTH-RNQGVAE-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 391 (600)
Q Consensus 319 ~~gs~IlvTt-R~~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai 391 (600)
..++.+|++| ....+.. .......+++.+++.++....+.+.+...+. ... .+.+..|++.++|..--+
T Consensus 149 p~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi-~i~---~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 149 PSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI-TAE---PEALNVIAQKADGGMRDA 219 (614)
T ss_pred CCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHH
Confidence 5566666544 4333332 2334578999999999999888876543221 111 256788999999977544
No 88
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=4.1e-05 Score=77.95 Aligned_cols=97 Identities=14% Similarity=0.161 Sum_probs=68.6
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH-HH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCC
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG-VA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDF 367 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 367 (600)
+++-++|+|+++..+....+.++..+.....++.+|+||.+.. +. +..+....+.+.+++.+++.+.+.+.....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~~~~--- 181 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQALPES--- 181 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhcccC---
Confidence 3444557899999888888888888876666788888877653 22 223345789999999999999887653111
Q ss_pred CCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 368 NIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 368 ~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
. .+.+..++..++|.|+....+
T Consensus 182 --~---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 182 --D---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --C---hHHHHHHHHHcCCCHHHHHHH
Confidence 1 134567788999999765544
No 89
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=6e-05 Score=83.13 Aligned_cols=197 Identities=15% Similarity=0.185 Sum_probs=112.5
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|.+.-+..|..++.... -...+.++|+.|+||||+|+.+........ ..... ......-+..+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~-~~~~~----~~~Cg~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLN-SDKPT----PEPCGKCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCC-cCCCC----CCCCcccHHHHHHh
Confidence 358899999999999986432 235788999999999999998877432111 10000 00111112222222
Q ss_pred HHhhcC----CCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH
Q 039283 264 NSIASD----QCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA 334 (600)
Q Consensus 264 ~~l~~~----~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~ 334 (600)
...... ........+...+.+... ..+++-++|+|+++..+...++.++..+......+.+|++|.+. .+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 211110 000112222332222211 12455689999998887777888877776654556565555433 222
Q ss_pred -hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 335 -ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 335 -~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
........+.+..++.++....+.+.+..... ... .+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi-~is---~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKESI-EIE---PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 22234467888899999988877765533211 111 255788999999988654433
No 90
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=7.8e-05 Score=81.31 Aligned_cols=193 Identities=15% Similarity=0.093 Sum_probs=112.6
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+++|-+.-++.|..++..+. -...+.++|+.|+||||+|+.+.+.......... ..+....+. +.+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C~~C----~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGECSSC----KSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccchHH----HHHH
Confidence 358999999999999996532 3457889999999999999988764321111000 001111011 1111
Q ss_pred HHhhcC----CCCCcccHHHHHH---HHHH-HhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccC-hHHH
Q 039283 264 NSIASD----QCTDKDDLNLLQE---KLKK-QLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRN-QGVA 334 (600)
Q Consensus 264 ~~l~~~----~~~~~~~~~~l~~---~l~~-~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~-~~v~ 334 (600)
..-... ........++..+ .+.. -..+++-++|+|+++..+...++.+...+......+.+|++|.+ ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 100000 0001112222222 1111 12356668999999888777788888877765566777666544 2332
Q ss_pred h-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHH
Q 039283 335 E-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 392 (600)
Q Consensus 335 ~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~ 392 (600)
. .......+++.+++.++....+.+.+...+. .. ..+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi-~i---d~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 164 ATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI-KY---EDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHH
Confidence 2 2223467899999999998888776643221 11 23667788999999885443
No 91
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=5.2e-05 Score=83.32 Aligned_cols=199 Identities=17% Similarity=0.187 Sum_probs=112.0
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+++|.+.-++.|.+++..+. -...+.++|+.|+||||+|+.+.+...-...... .+...-.....|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~-------~~c~~c~~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA-------EPCNVCPPCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC-------CCCCccHHHHHHh
Confidence 358999999999999985432 2456789999999999999888764211111000 0000001111111
Q ss_pred HH-------hhcCCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEec-cChHHH
Q 039283 264 NS-------IASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTH-RNQGVA 334 (600)
Q Consensus 264 ~~-------l~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~~~v~ 334 (600)
.. +.+.......+..++.+.+... ..++.-++|+|+++..+....+.++..+......+.+|++| ....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000000111222222222211 12445589999998877777778877776655566666555 434333
Q ss_pred h-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch-hHHHHHHhhh
Q 039283 335 E-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP-LAAKTLGGLL 398 (600)
Q Consensus 335 ~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP-Lai~~~~~~L 398 (600)
. .......+++.+++.++....+...+...+. .. ..+.+..|++.++|.. .++..+-.++
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi-~i---~~~al~~la~~a~G~lr~al~~Ldqli 225 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQEGI-SI---SDAALALVARKGDGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2 2234467889999999988888765432211 11 1256778889999876 5555554443
No 92
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.15 E-value=1.3e-05 Score=92.16 Aligned_cols=156 Identities=19% Similarity=0.183 Sum_probs=86.6
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhh---ccC-CceEEEEeCCCCCHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ---RHF-QIKAWTCVSEDFDVFTVS 259 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~---~~F-~~~~wv~vs~~~~~~~~l 259 (600)
.+++||+++++++.+.|... ...-+.++|++|+|||++|+.++...... ... ...+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~------~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRR------TKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHccc------ccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-
Confidence 35899999999999999643 23456799999999999999887743211 111 234442 1 11111
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC-------hhhHHhhcCCCCCCCCCcEEEEeccChH
Q 039283 260 KSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-------YNSWRALSCPFGAGASGSKIVVTHRNQG 332 (600)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 332 (600)
+.+... ...-.+.+...+.+.-..++.+|++|+++.-. ......++.+....+ ..++|.+|....
T Consensus 247 ------~ag~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~e 318 (821)
T CHL00095 247 ------LAGTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDE 318 (821)
T ss_pred ------hccCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHH
Confidence 111111 11112223333333334578999999995211 011222332222222 245565555544
Q ss_pred HHh-------hcCccceeecCCCCHHHHHHHHHH
Q 039283 333 VAE-------TMRAVSTKTLKELSDDDCLRVLIQ 359 (600)
Q Consensus 333 v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~ 359 (600)
... .......+.+...+.++...++..
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 322 112446788999999998888764
No 93
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.14 E-value=0.00011 Score=70.53 Aligned_cols=181 Identities=19% Similarity=0.181 Sum_probs=100.9
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+|+|.++-+++|.=.+..... ....+-.+.++|++|.||||||.-+.+...+ .+ -+.-+....-..-+..++
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv--n~----k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANELGV--NL----KITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC--Ce----EecccccccChhhHHHHH
Confidence 4699999888888766654322 3456789999999999999999988874322 22 111111111111122222
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCC--------CC-----------CCcEE
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGA--------GA-----------SGSKI 324 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~--------~~-----------~gs~I 324 (600)
..+. ..=+|.+|.++...+..-+.+..++.+ .+ +-+-|
T Consensus 99 t~Le-----------------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLI 155 (332)
T COG2255 99 TNLE-----------------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLI 155 (332)
T ss_pred hcCC-----------------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEe
Confidence 2221 122445566654332111111111110 11 22335
Q ss_pred EEeccChHHHhhcC--ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh
Q 039283 325 VVTHRNQGVAETMR--AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 398 (600)
Q Consensus 325 lvTtR~~~v~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L 398 (600)
=.|||...+...+. -..+.+++--+.+|-.++..+.+..-.. +-..+.+.+|+++..|-|--..-+-+.+
T Consensus 156 GATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i----~i~~~~a~eIA~rSRGTPRIAnRLLrRV 227 (332)
T COG2255 156 GATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI----EIDEEAALEIARRSRGTPRIANRLLRRV 227 (332)
T ss_pred eeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC----CCChHHHHHHHHhccCCcHHHHHHHHHH
Confidence 57888765544332 1245678888889999988887732211 1223678899999999997655554443
No 94
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.13 E-value=9.7e-05 Score=73.92 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=74.8
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
.-+.++|++|+|||++|+.+..............++.++. .+ ++..+.+.. .......+.+. .
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~------~~~~~~~~~~a---~ 121 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT------APKTKEILKRA---M 121 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc------hHHHHHHHHHc---c
Confidence 3688999999999999988776432222222223554442 12 222222211 11222233322 3
Q ss_pred cEEEEEecCCCC---------ChhhHHhhcCCCCCCCCCcEEEEeccChHHHhhcC--------ccceeecCCCCHHHHH
Q 039283 292 KFLLVLDDVWNE---------NYNSWRALSCPFGAGASGSKIVVTHRNQGVAETMR--------AVSTKTLKELSDDDCL 354 (600)
Q Consensus 292 ~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~--------~~~~~~l~~L~~~ea~ 354 (600)
.-+|+||++... ....+..+...+.....+.+||+++.......... -...+.+++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 368999999632 12223445555554445667777765442222111 1256899999999999
Q ss_pred HHHHHhhc
Q 039283 355 RVLIQHSL 362 (600)
Q Consensus 355 ~Lf~~~a~ 362 (600)
.++...+-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99887753
No 95
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.13 E-value=3.9e-05 Score=76.49 Aligned_cols=206 Identities=18% Similarity=0.178 Sum_probs=117.2
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 262 (600)
++.+.+|+.++..+..++...++ .-+..|.|+|-+|.|||.+.+++++... ...+|+++-+.++...++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~n-----~~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKLN-----LENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhcC-----CcceeeehHHhccHHHHHHHH
Confidence 45688999999999999966542 2345669999999999999999997541 135899999999999999999
Q ss_pred HHHhhcCCCC-C-----cccHHHHHHHHHH--Hh--CCCcEEEEEecCCCC---ChhhHHhhcCCCCCCCCCcEEEEecc
Q 039283 263 LNSIASDQCT-D-----KDDLNLLQEKLKK--QL--SGKKFLLVLDDVWNE---NYNSWRALSCPFGAGASGSKIVVTHR 329 (600)
Q Consensus 263 l~~l~~~~~~-~-----~~~~~~l~~~l~~--~L--~~k~~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~IlvTtR 329 (600)
+.+....... . ..+.......+.+ .. .++.++|||||++.- +..-+..+...-.-.......|+++-
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 9998522211 1 1222223333333 11 146899999999432 21112121111000111223344433
Q ss_pred Ch---HHHhhcCc--cceeecCCCCHHHHHHHHHHhhcCCCCCC-CChhHHHHHHHHHHhhcCchhHHHHHHhh
Q 039283 330 NQ---GVAETMRA--VSTKTLKELSDDDCLRVLIQHSLGARDFN-IPQSLKEVAEKIVKKCKGLPLAAKTLGGL 397 (600)
Q Consensus 330 ~~---~v~~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~l~~~~~~I~~~~~GlPLai~~~~~~ 397 (600)
.. .....++. ..++..+.-+.+|...++.+.-.+..... ...-+.-+..-....|+ -+-.+..+...
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACR-DVNELRSLISL 229 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHH
Confidence 22 12221232 24566778888898888865422111100 00111223345556666 55555555444
No 96
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.13 E-value=1.4e-05 Score=77.38 Aligned_cols=184 Identities=17% Similarity=0.180 Sum_probs=114.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEE-EEeCCCCCHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAW-TCVSEDFDVFTVSKSI 262 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~w-v~vs~~~~~~~~l~~i 262 (600)
..++|.+..+.-|.+.+.. ...++...+||+|.|||+-|..+....--.+.|++++- .++|..-... +.+.
T Consensus 36 de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~- 107 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVRE- 107 (346)
T ss_pred HhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhh-
Confidence 4589999999999998865 35678999999999999999888764433455666552 3333322111 0000
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHh--CCCc-EEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHHhh-c
Q 039283 263 LNSIASDQCTDKDDLNLLQEKLKKQL--SGKK-FLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVAET-M 337 (600)
Q Consensus 263 l~~l~~~~~~~~~~~~~l~~~l~~~L--~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~-~ 337 (600)
...+...+........ ..++ -++|||+++....+.|..+...+......+++++.+..- .+... .
T Consensus 108 ----------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 108 ----------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ----------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0111111111111000 0134 388999999999999999998887766667665554432 22211 1
Q ss_pred CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh
Q 039283 338 RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL 389 (600)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL 389 (600)
.....+..++|..++...-+...+...+. .. ..+..+.|++.++|---
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v-~~---d~~al~~I~~~S~GdLR 225 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEGV-DI---DDDALKLIAKISDGDLR 225 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhCC-CC---CHHHHHHHHHHcCCcHH
Confidence 23356889999999999888877654332 12 23667888888888643
No 97
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.12 E-value=0.00015 Score=69.10 Aligned_cols=125 Identities=26% Similarity=0.281 Sum_probs=74.0
Q ss_pred cCCCCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHH
Q 039283 179 SLVNEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTV 258 (600)
Q Consensus 179 ~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 258 (600)
.++.-..++|-+.+++.|++-...-- ......-+.++|..|+|||+|++.+.+...... .--|.+.+.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl--~G~pannvLL~G~rGtGKSSlVkall~~y~~~G----LRlIev~k~------ 89 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFL--QGLPANNVLLWGARGTGKSSLVKALLNEYADQG----LRLIEVSKE------ 89 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHH--cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC----ceEEEECHH------
Confidence 34455679999999999877553322 223456788999999999999999987433222 112333321
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCC-CChhhHHhhcCCCCCC----CCCcEEEEeccCh
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN-ENYNSWRALSCPFGAG----ASGSKIVVTHRNQ 331 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~----~~gs~IlvTtR~~ 331 (600)
...++..+.+.++. ...||+|.+||+-- .+...+..+...|..+ ..+..|..||...
T Consensus 90 --------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRR 151 (249)
T PF05673_consen 90 --------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRR 151 (249)
T ss_pred --------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchh
Confidence 22334444444442 35799999999842 2234455555544332 2344444555433
No 98
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=0.00012 Score=80.07 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=109.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|.+.-++.|.+++.... -...+.++|+.|+|||++|+.+.........-+ ..+.+.-.....+.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~-------~~pC~~C~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD-------GEPCNECEICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-------CCCCCccHHHHHHh
Confidence 358999999999999996542 345677899999999999988865321111000 00111111111221
Q ss_pred HHhhc-------CCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEec-cChHHH
Q 039283 264 NSIAS-------DQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTH-RNQGVA 334 (600)
Q Consensus 264 ~~l~~-------~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt-R~~~v~ 334 (600)
..... ..........++.+.+... ..++.-++|+|+++......+..++..+......+.+|++| ....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 11000 0000111122222222211 13466688999998877777888877776554555555554 333332
Q ss_pred h-hcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHH
Q 039283 335 E-TMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 391 (600)
Q Consensus 335 ~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai 391 (600)
. .......+.+.+++.++....+...+...+. ... .+.+..|++.++|.+.-+
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-~i~---~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKEGI-EYE---DEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHH
Confidence 2 2234467889999999998888776533221 111 255778888898887543
No 99
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.09 E-value=7.7e-06 Score=83.59 Aligned_cols=92 Identities=16% Similarity=0.178 Sum_probs=62.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC--CCHHHHHHHHHHHhhcCCCCCcccH-----HHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED--FDVFTVSKSILNSIASDQCTDKDDL-----NLLQE 282 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~--~~~~~~l~~il~~l~~~~~~~~~~~-----~~l~~ 282 (600)
.-..++|+|++|+|||||++.+++.... ++|+..+|+.+.+. .++.++++.++..+-......+... ....+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4468999999999999999999986543 37999999998865 6888998888654433322111111 11112
Q ss_pred HHHHH-hCCCcEEEEEecCCC
Q 039283 283 KLKKQ-LSGKKFLLVLDDVWN 302 (600)
Q Consensus 283 ~l~~~-L~~k~~LlVlDdv~~ 302 (600)
..... -.+++++|++|++..
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR 266 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITR 266 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhH
Confidence 22222 258999999999953
No 100
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.07 E-value=0.00012 Score=74.14 Aligned_cols=197 Identities=14% Similarity=0.104 Sum_probs=114.3
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhh-------------hccCCceEEEEeCC
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRV-------------QRHFQIKAWTCVSE 251 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~-------------~~~F~~~~wv~vs~ 251 (600)
.++|.+..++.|...+..+. -.....++|+.|+||+++|..+.+..-- ...++...|+.-..
T Consensus 5 ~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~ 79 (314)
T PRK07399 5 NLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTY 79 (314)
T ss_pred HhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccc
Confidence 58899999999999985442 2478999999999999999777653211 11233445543210
Q ss_pred CCCHHHHHHHHHHHhhcCCC-CCcccHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEE
Q 039283 252 DFDVFTVSKSILNSIASDQC-TDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIV 325 (600)
Q Consensus 252 ~~~~~~~l~~il~~l~~~~~-~~~~~~~~l~~~l~~~L-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il 325 (600)
..+-..+...-+...+.... ...-..++. +.+.+.+ .+++-++|+|+++..+....+.++..+.... .+.+|
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fI 157 (314)
T PRK07399 80 QHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLI 157 (314)
T ss_pred cccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEE
Confidence 00000000111111110000 011122222 2233333 2456699999998888778888877775544 44555
Q ss_pred EeccCh-HHH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 326 VTHRNQ-GVA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 326 vTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
++|.+. .+. +..+....+.+.+++.++..+.+.+...... .......++..++|.|..+..+.
T Consensus 158 Li~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 158 LIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHHH
Confidence 555443 332 2234557899999999999999987642111 01113578899999997665433
No 101
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.05 E-value=1.5e-05 Score=83.56 Aligned_cols=179 Identities=15% Similarity=0.151 Sum_probs=96.8
Q ss_pred CCccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDV 255 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 255 (600)
...+.|++..+++|.+.+..+-. -+-..++-|.|+|++|+|||++|+.+++.. ... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~--~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET--NAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh--CCC-----EEEeeh----
Confidence 34689999999999887632110 011345678999999999999999998732 212 333221
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCC-----------ChhhHHhh---cCCCCC--CC
Q 039283 256 FTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE-----------NYNSWRAL---SCPFGA--GA 319 (600)
Q Consensus 256 ~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~-----------~~~~~~~l---~~~l~~--~~ 319 (600)
.+ +.....+ .........+...-...+.+|+||+++.. +......+ ...+.. ..
T Consensus 199 ~~----l~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SE----LVQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HH----HhHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 11 1111111 11111222222222456889999999542 11111112 212221 12
Q ss_pred CCcEEEEeccChHHHh-hc-C---ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCc
Q 039283 320 SGSKIVVTHRNQGVAE-TM-R---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 387 (600)
Q Consensus 320 ~gs~IlvTtR~~~v~~-~~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~Gl 387 (600)
.+..||.||....... .+ . -...+.+++.+.++-.++|..+...... ...-. ...+++.+.|.
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGA 336 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCC
Confidence 3566777776543221 11 1 1256899999999999999877643221 11112 34566666664
No 102
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.03 E-value=7.4e-05 Score=86.22 Aligned_cols=158 Identities=15% Similarity=0.123 Sum_probs=86.1
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhcc----CCceEEEEeCCCCCHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH----FQIKAWTCVSEDFDVFTVS 259 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~l 259 (600)
..++||+.+++++++.|... ....+.++|++|+|||++|+.+......... ....+|.- ++.
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~--- 238 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMG--- 238 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHH---
Confidence 35899999999999999553 2345668999999999999988764311110 12223321 111
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHhC-CCcEEEEEecCCCCC-------hhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 260 KSILNSIASDQCTDKDDLNLLQEKLKKQLS-GKKFLLVLDDVWNEN-------YNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~l~~~l~~~L~-~k~~LlVlDdv~~~~-------~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
.++. +... ...-...+...+...-+ +++.+|++|+++... ......++.+....+ ...+|.+|...
T Consensus 239 -~l~a---~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~ 312 (852)
T TIGR03346 239 -ALIA---GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLD 312 (852)
T ss_pred -HHhh---cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHH
Confidence 1110 1000 11111222333333222 468999999996421 011223333333222 24555555544
Q ss_pred HHHh-------hcCccceeecCCCCHHHHHHHHHHhh
Q 039283 332 GVAE-------TMRAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 332 ~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
.... ....+..+.+...+.++...++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 3321 11244678899999999999887553
No 103
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.02 E-value=4.8e-05 Score=79.20 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=77.1
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..+++.+..++.+...|... +.+.++|++|+|||++|+.+++.......|..+.||.++..++..+++..+-
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 34788899999999998643 4788899999999999999987654445677788999998887665543221
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhC--CCcEEEEEecCCCCChhh-HHhhcCCCC
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNENYNS-WRALSCPFG 316 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVlDdv~~~~~~~-~~~l~~~l~ 316 (600)
.....-........+.+..... +++++||+|++...+... +..+...+.
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE 298 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLME 298 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhcc
Confidence 1100000000112222333222 478999999996655433 444444443
No 104
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.99 E-value=0.00022 Score=75.53 Aligned_cols=161 Identities=17% Similarity=0.173 Sum_probs=92.0
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
...+.|+|++|+|||+|++.+++.......-..+++++ ..++...+...+... ..+.. .+.+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~------~~~~~----~~~~~~ 199 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN------KMEEF----KEKYRS 199 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC------CHHHH----HHHHHh
Confidence 45689999999999999999998543221112344554 334445555555321 12222 222322
Q ss_pred CcEEEEEecCCCCChhh--HHhhcCCCCCC-CCCcEEEEeccCh-HH--------HhhcCccceeecCCCCHHHHHHHHH
Q 039283 291 KKFLLVLDDVWNENYNS--WRALSCPFGAG-ASGSKIVVTHRNQ-GV--------AETMRAVSTKTLKELSDDDCLRVLI 358 (600)
Q Consensus 291 k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs~IlvTtR~~-~v--------~~~~~~~~~~~l~~L~~~ea~~Lf~ 358 (600)
.-+|||||++...... .+.+...+... ..+..+|+|+... .. ...+.....+.+.+.+.++-..++.
T Consensus 200 -~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 200 -VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred -CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHH
Confidence 3488999996432111 12222222211 1345677777642 11 1122233568899999999999999
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHH
Q 039283 359 QHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 392 (600)
Q Consensus 359 ~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~ 392 (600)
+.+..... ..+ +++...|++.+.|.+-.+.
T Consensus 279 ~~~~~~~~-~l~---~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 279 KKAEEEGL-ELP---DEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHcCC-CCC---HHHHHHHHHhcCCCHHHHH
Confidence 88754321 222 3677888888888776543
No 105
>PRK06620 hypothetical protein; Validated
Probab=97.99 E-value=5e-05 Score=72.55 Aligned_cols=140 Identities=13% Similarity=0.104 Sum_probs=81.2
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . + +.. ..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~---------------------~-~-------~~~-~~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF---------------------N-E-------EIL-EK 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh---------------------c-h-------hHH-hc
Confidence 6799999999999999998766321 1 1111 0000 0 0 011 12
Q ss_pred cEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHH-------HhhcCccceeecCCCCHHHHHHHHHHhhcCC
Q 039283 292 KFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGV-------AETMRAVSTKTLKELSDDDCLRVLIQHSLGA 364 (600)
Q Consensus 292 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 364 (600)
.-+|++||++.......-.+...+. ..|..||+|++.... ...+....++.+++++.++-..++.+.+...
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 3478899996432122222222222 246689999875422 2222334589999999999888887776422
Q ss_pred CCCCCChhHHHHHHHHHHhhcCchhHHHHHHh
Q 039283 365 RDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 396 (600)
Q Consensus 365 ~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~ 396 (600)
....+ +++..-|++.+.|.--.+.-+-.
T Consensus 164 -~l~l~---~ev~~~L~~~~~~d~r~l~~~l~ 191 (214)
T PRK06620 164 -SVTIS---RQIIDFLLVNLPREYSKIIEILE 191 (214)
T ss_pred -CCCCC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 11222 36778888888877655544433
No 106
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.97 E-value=2.1e-05 Score=88.41 Aligned_cols=157 Identities=20% Similarity=0.240 Sum_probs=88.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc-c---CCceEEEEeCCCCCHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR-H---FQIKAWTCVSEDFDVFTVS 259 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~-~---F~~~~wv~vs~~~~~~~~l 259 (600)
+.++||+.+++++.+.|.... ..-+.++|++|+|||++|+.+........ . .++.+|.. ++.
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH---
Confidence 358999999999999996532 23457899999999999999886421111 1 13334421 111
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCCcEEEEEecCCCC--------ChhhHHhhcCCCCCCCCCcEEEEeccC
Q 039283 260 KSILNSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNE--------NYNSWRALSCPFGAGASGSKIVVTHRN 330 (600)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~IlvTtR~ 330 (600)
.++ .+.. ...+.+.....+...+ +.++.+|++|+++.. ...+...++.++... ...++|-+|..
T Consensus 252 -~ll---aG~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~ 324 (758)
T PRK11034 252 -SLL---AGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_pred -HHh---cccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCCh
Confidence 111 1111 0112222222222222 356789999999631 112233333333322 23455655554
Q ss_pred hHHHh-------hcCccceeecCCCCHHHHHHHHHHhh
Q 039283 331 QGVAE-------TMRAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 331 ~~v~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
.+... ....+..+.+++++.+++..++....
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 44321 11245689999999999999998653
No 107
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.97 E-value=0.00028 Score=71.22 Aligned_cols=96 Identities=14% Similarity=0.151 Sum_probs=68.6
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCC
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDF 367 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 367 (600)
++.=++|+|+++..+...-+.++..+..-..++.+|++|.+. .+. +..+....+.+.+++.+++.+.+.+..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 456699999998888778888888777666778777777654 222 333455788999999999998886531
Q ss_pred CCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 368 NIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 368 ~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
.+ ...+..++..++|.|+....+.
T Consensus 186 -~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 -VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 1336678999999998665443
No 108
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.96 E-value=0.00016 Score=76.86 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=93.0
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCC-ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ-IKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
...+.|+|++|+|||+|++.+++... ..+.. .++|++. .+++..+...+... ..+. +.+.+.
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~-~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~~ 192 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVV-QNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKYR 192 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHH-HhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHHH
Confidence 44599999999999999999998532 22222 3456643 45566666655321 1222 222333
Q ss_pred CCcEEEEEecCCCCC-hhhH-HhhcCCCCCC-CCCcEEEEecc-ChHHHh--------hcCccceeecCCCCHHHHHHHH
Q 039283 290 GKKFLLVLDDVWNEN-YNSW-RALSCPFGAG-ASGSKIVVTHR-NQGVAE--------TMRAVSTKTLKELSDDDCLRVL 357 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~-~~~~-~~l~~~l~~~-~~gs~IlvTtR-~~~v~~--------~~~~~~~~~l~~L~~~ea~~Lf 357 (600)
.+.-+|++||+.... ...+ ..+...+... ..|..||+||. .+.-.. .+.....+.+.+.+.+.-..++
T Consensus 193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL 272 (440)
T PRK14088 193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA 272 (440)
T ss_pred hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence 345689999996421 1111 1222222111 12446888874 332211 1223357889999999999999
Q ss_pred HHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHH
Q 039283 358 IQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 392 (600)
Q Consensus 358 ~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~ 392 (600)
.+.+.... ...+ .+++..|++.+.|..-.+.
T Consensus 273 ~~~~~~~~-~~l~---~ev~~~Ia~~~~~~~R~L~ 303 (440)
T PRK14088 273 RKMLEIEH-GELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_pred HHHHHhcC-CCCC---HHHHHHHHhccccCHHHHH
Confidence 88874322 1222 3667888888887654443
No 109
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.96 E-value=9.9e-05 Score=84.88 Aligned_cols=157 Identities=15% Similarity=0.086 Sum_probs=85.0
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc---c-CCceE-EEEeCCCCCHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR---H-FQIKA-WTCVSEDFDVFTV 258 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~---~-F~~~~-wv~vs~~~~~~~~ 258 (600)
.+++||+.+++++++.|... ....+.++|++|+|||+||+.+........ . ....+ +++++.-
T Consensus 178 ~~vigr~~ei~~~i~iL~r~------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l------ 245 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL------ 245 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcC------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh------
Confidence 35899999999999999654 234567999999999999998876421110 0 12222 2222211
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCCcEEEEEecCCCCCh-------hhHHhhcCCCCCCCCCcEEEEeccC
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNENY-------NSWRALSCPFGAGASGSKIVVTHRN 330 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVlDdv~~~~~-------~~~~~l~~~l~~~~~gs~IlvTtR~ 330 (600)
+. +... ...-.+.+...+.+.. .+++.+|++|+++.... .....++.+....+ ..++|-+|..
T Consensus 246 ----~a---g~~~-~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g-~l~~IgaTt~ 316 (857)
T PRK10865 246 ----VA---GAKY-RGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-ELHCVGATTL 316 (857)
T ss_pred ----hh---ccch-hhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcC-CCeEEEcCCC
Confidence 10 0000 1111122233333222 25789999999964311 11223333333222 3456655555
Q ss_pred hHHHhh-------cCccceeecCCCCHHHHHHHHHHhh
Q 039283 331 QGVAET-------MRAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 331 ~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
.+.... ...+..+.+...+.++...++....
T Consensus 317 ~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 317 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred HHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 443211 1234466777778899998886543
No 110
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.96 E-value=0.00025 Score=76.16 Aligned_cols=159 Identities=16% Similarity=0.183 Sum_probs=92.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF--QIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
...+.|+|++|+|||+|++.+.+.. ...+ ..+++++. .++...+...+... ..+. +.+.+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~--~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~----~~~~~ 209 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI--LEKNPNAKVVYVTS------EKFTNDFVNALRNN------TMEE----FKEKY 209 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEEEH------HHHHHHHHHHHHcC------cHHH----HHHHH
Confidence 4568999999999999999999853 3333 23445543 33444455544321 1222 22333
Q ss_pred CCCcEEEEEecCCCCChh--hHHhhcCCCCCC-CCCcEEEEeccChH---------HHhhcCccceeecCCCCHHHHHHH
Q 039283 289 SGKKFLLVLDDVWNENYN--SWRALSCPFGAG-ASGSKIVVTHRNQG---------VAETMRAVSTKTLKELSDDDCLRV 356 (600)
Q Consensus 289 ~~k~~LlVlDdv~~~~~~--~~~~l~~~l~~~-~~gs~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 356 (600)
. +.-+|||||++..... ..+.+...+... ..|..||+||.... +...+.....+.+.+.+.++-..+
T Consensus 210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i 288 (450)
T PRK00149 210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI 288 (450)
T ss_pred h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence 3 3448999999643211 112222222111 12445777776431 122223345789999999999999
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHH
Q 039283 357 LIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 392 (600)
Q Consensus 357 f~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~ 392 (600)
+.+.+.... ...+ +++...|++.+.|..-.+.
T Consensus 289 l~~~~~~~~-~~l~---~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 289 LKKKAEEEG-IDLP---DEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHHcC-CCCC---HHHHHHHHcCcCCCHHHHH
Confidence 998875321 1222 3678888999998876543
No 111
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00038 Score=73.92 Aligned_cols=155 Identities=14% Similarity=0.135 Sum_probs=87.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
..-+.|+|+.|+|||+|++.+.+.... ....+++++ ...+...+...+... .. +.++..+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~--~~~~v~yi~------~~~f~~~~~~~l~~~------~~----~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRE--SGGKILYVR------SELFTEHLVSAIRSG------EM----QRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHH--cCCCEEEee------HHHHHHHHHHHHhcc------hH----HHHHHHcc-
Confidence 356889999999999999999985422 223344544 334444555554321 11 22333333
Q ss_pred CcEEEEEecCCCCChhh--HHhhcCCCCCC-CCCcEEEEeccCh-H--------HHhhcCccceeecCCCCHHHHHHHHH
Q 039283 291 KKFLLVLDDVWNENYNS--WRALSCPFGAG-ASGSKIVVTHRNQ-G--------VAETMRAVSTKTLKELSDDDCLRVLI 358 (600)
Q Consensus 291 k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~gs~IlvTtR~~-~--------v~~~~~~~~~~~l~~L~~~ea~~Lf~ 358 (600)
..-+|++||+....... .+.+...+... ..|..||+||... . +...+.....+.+.+++.++-..++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 34488899986532211 12222222110 1345688887542 1 12222234688899999999999998
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 359 QHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 359 ~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
+.+-... ...+ .++..-|+..+.|.-
T Consensus 282 ~k~~~~~-~~l~---~evl~~la~~~~~di 307 (445)
T PRK12422 282 RKAEALS-IRIE---ETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHcC-CCCC---HHHHHHHHHhcCCCH
Confidence 8774432 1222 255566666666543
No 112
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.91 E-value=2.2e-05 Score=68.80 Aligned_cols=69 Identities=23% Similarity=0.208 Sum_probs=40.7
Q ss_pred EEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC-c
Q 039283 214 VSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK-K 292 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k-~ 292 (600)
|.|+|++|+|||++|+.+++... + ..+.++.+...+ . . .......+...+.+.-... +
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~----~-~~~~i~~~~~~~--------------~-~-~~~~~~~i~~~~~~~~~~~~~ 59 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG----F-PFIEIDGSELIS--------------S-Y-AGDSEQKIRDFFKKAKKSAKP 59 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT----S-EEEEEETTHHHT--------------S-S-TTHHHHHHHHHHHHHHHTSTS
T ss_pred CEEECcCCCCeeHHHHHHHhhcc----c-cccccccccccc--------------c-c-ccccccccccccccccccccc
Confidence 57999999999999999997532 1 123343322110 0 0 2233333444444433333 8
Q ss_pred EEEEEecCCCC
Q 039283 293 FLLVLDDVWNE 303 (600)
Q Consensus 293 ~LlVlDdv~~~ 303 (600)
.+|+|||++..
T Consensus 60 ~vl~iDe~d~l 70 (132)
T PF00004_consen 60 CVLFIDEIDKL 70 (132)
T ss_dssp EEEEEETGGGT
T ss_pred eeeeeccchhc
Confidence 99999999643
No 113
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.88 E-value=0.00029 Score=76.37 Aligned_cols=160 Identities=16% Similarity=0.162 Sum_probs=91.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
..+.|+|..|+|||.|++.+++.......-..+++++ ..+++..+...+... ..+. +++.+.+
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit------aeef~~el~~al~~~------~~~~----f~~~y~~- 377 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS------SEEFTNEFINSIRDG------KGDS----FRRRYRE- 377 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee------HHHHHHHHHHHHHhc------cHHH----HHHHhhc-
Confidence 3589999999999999999998432211112334554 344555555444321 1122 2233332
Q ss_pred cEEEEEecCCCCCh-hhHH-hhcCCCCCC-CCCcEEEEeccCh---------HHHhhcCccceeecCCCCHHHHHHHHHH
Q 039283 292 KFLLVLDDVWNENY-NSWR-ALSCPFGAG-ASGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLRVLIQ 359 (600)
Q Consensus 292 ~~LlVlDdv~~~~~-~~~~-~l~~~l~~~-~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~Lf~~ 359 (600)
.=+|||||+..... ..|. .+...+... ..|..|||||... .+...+...-.+.|.+.+.+.-.+++.+
T Consensus 378 ~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 378 MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRK 457 (617)
T ss_pred CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHH
Confidence 34789999964322 2222 222222211 2355688888753 2222333456889999999999999998
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhhcCchhHHH
Q 039283 360 HSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 392 (600)
Q Consensus 360 ~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~ 392 (600)
++.... ...+ .+++.-|++.+.+..-.|.
T Consensus 458 ka~~r~-l~l~---~eVi~yLa~r~~rnvR~Le 486 (617)
T PRK14086 458 KAVQEQ-LNAP---PEVLEFIASRISRNIRELE 486 (617)
T ss_pred HHHhcC-CCCC---HHHHHHHHHhccCCHHHHH
Confidence 875432 1222 3667777777776654443
No 114
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.00035 Score=71.56 Aligned_cols=164 Identities=9% Similarity=0.067 Sum_probs=92.6
Q ss_pred cccc-ccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 185 EVYG-REKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 185 ~~vG-R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.++| -+.-++.|.+.+..+ .-.....++|+.|+|||++|..+.+..--....... .++.. ...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C----~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTC----TNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcC----HHHHHHh
Confidence 3566 666777787777543 234567999999999999998886532111101000 00000 0000000
Q ss_pred HHhhc-----CCCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH-H
Q 039283 264 NSIAS-----DQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG-V 333 (600)
Q Consensus 264 ~~l~~-----~~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v 333 (600)
..-.. .........++..+.+... ..+.+=++|+|+++..+....+.++..+.....++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 0000111223322222211 224556799999988877778888888877667787887776542 2
Q ss_pred H-hhcCccceeecCCCCHHHHHHHHHHh
Q 039283 334 A-ETMRAVSTKTLKELSDDDCLRVLIQH 360 (600)
Q Consensus 334 ~-~~~~~~~~~~l~~L~~~ea~~Lf~~~ 360 (600)
. +..+....+++.+++.++..+.+.+.
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 2 22334578999999999998888653
No 115
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00067 Score=68.65 Aligned_cols=176 Identities=12% Similarity=0.073 Sum_probs=102.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccC---Cce-----EEEEeCCCCCHHHHHHHHHH
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF---QIK-----AWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~~-----~wv~vs~~~~~~~~l~~il~ 264 (600)
-+.|.+.+..+ .-.....++|+.|+||+++|..+....--.... .|. -++..+..+|+..+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (325)
T PRK06871 11 YQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL------ 79 (325)
T ss_pred HHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE------
Confidence 34566666432 234577899999999999998887642111111 000 00111111111100
Q ss_pred HhhcCCCCCcccHHHHH---HHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH-hhcC
Q 039283 265 SIASDQCTDKDDLNLLQ---EKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA-ETMR 338 (600)
Q Consensus 265 ~l~~~~~~~~~~~~~l~---~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~-~~~~ 338 (600)
..... .....++.. +.+... ..+++=++|+|+++..+....+.++..+....+++.+|++|.+. .+. +..+
T Consensus 80 --~p~~~-~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 80 --EPIDN-KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred --ccccC-CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 00000 112233322 222211 12556688899999988888899988888777788888877764 332 3334
Q ss_pred ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHH
Q 039283 339 AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 391 (600)
Q Consensus 339 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai 391 (600)
....+.+.+++.++..+.+.+.... .+ ..+...+..++|.|+-+
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~~~------~~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQSSA------EI---SEILTALRINYGRPLLA 200 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHhcc------Ch---HHHHHHHHHcCCCHHHH
Confidence 4578999999999999888765311 11 23556778899999643
No 116
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.86 E-value=0.00074 Score=68.17 Aligned_cols=165 Identities=13% Similarity=0.064 Sum_probs=102.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc------------------cCCceEEEEeCCCCC
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR------------------HFQIKAWTCVSEDFD 254 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~------------------~F~~~~wv~vs~~~~ 254 (600)
.++|.+.+..+ .-...+.++|+.|+||+++|..+....--.. ..+...|+.-..
T Consensus 12 ~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--- 83 (319)
T PRK06090 12 WQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--- 83 (319)
T ss_pred HHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc---
Confidence 45566665433 2356788999999999999988765321111 011112221100
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEecc
Q 039283 255 VFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHR 329 (600)
Q Consensus 255 ~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR 329 (600)
.......++..+ +.+.+ .++.=++|+|+++..+....+.++..+....+++.+|++|.
T Consensus 84 ----------------~~~~I~vdqiR~-l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (319)
T PRK06090 84 ----------------EGKSITVEQIRQ-CNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTH 146 (319)
T ss_pred ----------------CCCcCCHHHHHH-HHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 001122333322 22222 23455899999998888889999888877777787777776
Q ss_pred ChH--HHhhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 330 NQG--VAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 330 ~~~--v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
+.. ..+..+....+.+.+++.+++.+.+.+... + ....++..++|.|+....+
T Consensus 147 ~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~~-------~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 147 NQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQGI-------T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred ChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcCC-------c-----hHHHHHHHcCCCHHHHHHH
Confidence 642 334444567899999999999998865410 1 1346788999999977554
No 117
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.77 E-value=0.00027 Score=64.46 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=79.1
Q ss_pred cccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhh------------------ccCCceEEEEe
Q 039283 188 GREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ------------------RHFQIKAWTCV 249 (600)
Q Consensus 188 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~------------------~~F~~~~wv~v 249 (600)
|-+...+.|.+.+..+. -...+.++|+.|+||+++|..+.+..--. ...+...|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 45566777777775442 34578999999999999998876632111 12233344432
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEE
Q 039283 250 SEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKI 324 (600)
Q Consensus 250 s~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~I 324 (600)
.... .....++.. .+...+ .++.=++|+||++..+...+..++..+.....++.+
T Consensus 76 ~~~~-------------------~~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 76 DKKK-------------------KSIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp TTSS-------------------SSBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred cccc-------------------chhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 2210 012233322 222222 235668999999998888999998888777788999
Q ss_pred EEeccChH--HHhhcCccceeecCCCC
Q 039283 325 VVTHRNQG--VAETMRAVSTKTLKELS 349 (600)
Q Consensus 325 lvTtR~~~--v~~~~~~~~~~~l~~L~ 349 (600)
|++|.+.. ..+..+....+.+.+++
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEECChHHChHHHHhhceEEecCCCC
Confidence 99888763 22333344566666653
No 118
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.76 E-value=0.0016 Score=67.32 Aligned_cols=135 Identities=16% Similarity=0.182 Sum_probs=82.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
....+.|+|+.|.|||.|++++.+. .....+....+.++ .......++..+... -.+.+++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~--~~~~~~~a~v~y~~----se~f~~~~v~a~~~~----------~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNE--ALANGPNARVVYLT----SEDFTNDFVKALRDN----------EMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHH--HHhhCCCceEEecc----HHHHHHHHHHHHHhh----------hHHHHHHhh-
Confidence 5678999999999999999999984 33444433333332 334444555444321 123444444
Q ss_pred CCcEEEEEecCCCCC-----hhhHHhhcCCCCCCCCCcEEEEeccCh---------HHHhhcCccceeecCCCCHHHHHH
Q 039283 290 GKKFLLVLDDVWNEN-----YNSWRALSCPFGAGASGSKIVVTHRNQ---------GVAETMRAVSTKTLKELSDDDCLR 355 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~-----~~~~~~l~~~l~~~~~gs~IlvTtR~~---------~v~~~~~~~~~~~l~~L~~~ea~~ 355 (600)
.-=++++||++.-. ...+-.+...+... |-.||+|++.. .+...+...-.+.+.+.+.+....
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLEN--GKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 33488999996421 11222223333332 34899999653 233334455789999999999999
Q ss_pred HHHHhhcCC
Q 039283 356 VLIQHSLGA 364 (600)
Q Consensus 356 Lf~~~a~~~ 364 (600)
++.+.+...
T Consensus 252 iL~kka~~~ 260 (408)
T COG0593 252 ILRKKAEDR 260 (408)
T ss_pred HHHHHHHhc
Confidence 999876443
No 119
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00098 Score=68.12 Aligned_cols=177 Identities=15% Similarity=0.128 Sum_probs=103.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccC---Cce-----EEEEeCCCCCHHHHHHHHHH
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF---QIK-----AWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~~-----~wv~vs~~~~~~~~l~~il~ 264 (600)
-++|.+.+.++ .-...+.++|+.|+||+++|..+....--...- .|. -++..+..+|+..+
T Consensus 11 ~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (334)
T PRK07993 11 YEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL------ 79 (334)
T ss_pred HHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 45566666433 245678899999999999998876532111100 010 01111111111100
Q ss_pred HhhcCCCCCcccHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH-hhc
Q 039283 265 SIASDQCTDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA-ETM 337 (600)
Q Consensus 265 ~l~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~-~~~ 337 (600)
.+.........++..+ +.+.+ .+++=++|+|+++..+...-+.++..|.....++.+|++|.+. .+. +..
T Consensus 80 --~p~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 --TPEKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred --ecccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000001122333322 22222 2566699999999888888888888887777788777777764 233 333
Q ss_pred CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHH
Q 039283 338 RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAK 392 (600)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~ 392 (600)
+....+.+.+++.+++.+.+.+.. + .+ .+.+..++..++|.|....
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 445678999999999998886542 1 11 1336678899999996443
No 120
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.74 E-value=0.00013 Score=77.40 Aligned_cols=189 Identities=19% Similarity=0.178 Sum_probs=114.6
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
+++|-+.-+..|...+..+. -.......|+.|+||||+|+.+........ | ....++..-...+.|..
T Consensus 17 evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~------~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 17 DVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCEN------G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCC------C-CCCCcchhhhhhHhhhc
Confidence 57999999999999996543 344567899999999999998876422111 1 11112222222222222
Q ss_pred H-------hhcCCCCCcccHHHHHHHHHHHh-CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-H-HH
Q 039283 265 S-------IASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-G-VA 334 (600)
Q Consensus 265 ~-------l~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~-v~ 334 (600)
. +........++..++.+.+.-.- .++.=+.|+|.|+-.....|..++..+-......++|+.|.+. . ..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 2 00000112223333332222111 3455589999999888889999999887776777777766654 2 23
Q ss_pred hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh
Q 039283 335 ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL 389 (600)
Q Consensus 335 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL 389 (600)
+..+....|.++.++.++-...+...+..... . ...+...-|++..+|..-
T Consensus 165 TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I-~---~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 165 TILSRCQRFDFKRLDLEEIAKHLAAILDKEGI-N---IEEDALSLIARAAEGSLR 215 (515)
T ss_pred hhhhccccccccCCCHHHHHHHHHHHHHhcCC-c---cCHHHHHHHHHHcCCChh
Confidence 34456688999999999888888776643322 1 122455666667766543
No 121
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.72 E-value=0.00027 Score=77.63 Aligned_cols=210 Identities=15% Similarity=0.159 Sum_probs=104.7
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC---CCCHHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE---DFDVFTVS 259 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~l 259 (600)
-.+++|.++.++++..|+..... .....+++.|+|++|+||||+++.++.... ++..-|++-.. ..+...+.
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~l~----~~~~Ew~npv~~~~~~~~~~~~ 157 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKELG----IQVQEWSNPTLPDFQKNDHKVT 157 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHHhh----hHHHHHhhhhhhcccccccccc
Confidence 34689999999999999865432 223346799999999999999999886421 22222322110 00011111
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHH---H----hCCCcEEEEEecCCCC---ChhhHHhhcC-CCCCCCCCcEEEEec
Q 039283 260 KSILNSIASDQCTDKDDLNLLQEKLKK---Q----LSGKKFLLVLDDVWNE---NYNSWRALSC-PFGAGASGSKIVVTH 328 (600)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~l~~~l~~---~----L~~k~~LlVlDdv~~~---~~~~~~~l~~-~l~~~~~gs~IlvTt 328 (600)
..+..++..... .............. . ..+++.+|+||++... ....+..++. .+...+.-.-|++||
T Consensus 158 ~s~~~~~~~~~s-~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~~pLI~I~T 236 (637)
T TIGR00602 158 LSLESCFSNFQS-QIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGRCPLVFIIT 236 (637)
T ss_pred hhhhhccccccc-hHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCCceEEEEec
Confidence 122222211110 11112222222111 1 1356789999999332 2223444444 332222223455566
Q ss_pred cChH---------HH-------hhc--CccceeecCCCCHHHHHHHHHHhhcCCCCCCCCh---hHHHHHHHHHHhhcCc
Q 039283 329 RNQG---------VA-------ETM--RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQ---SLKEVAEKIVKKCKGL 387 (600)
Q Consensus 329 R~~~---------v~-------~~~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~---~l~~~~~~I~~~~~Gl 387 (600)
-+.. .. ... .....+.+.+++...-...+...+-........+ ...+....|+..++|-
T Consensus 237 E~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GD 316 (637)
T TIGR00602 237 ESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGD 316 (637)
T ss_pred CCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCCh
Confidence 3211 10 111 1234688999999997666665543211100000 0125566777788877
Q ss_pred hhHHHHHHhhh
Q 039283 388 PLAAKTLGGLL 398 (600)
Q Consensus 388 PLai~~~~~~L 398 (600)
--.+...-..+
T Consensus 317 iRsAIn~LQf~ 327 (637)
T TIGR00602 317 IRSAINSLQFS 327 (637)
T ss_pred HHHHHHHHHHH
Confidence 65444444443
No 122
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.72 E-value=0.0012 Score=65.27 Aligned_cols=42 Identities=24% Similarity=0.298 Sum_probs=28.9
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHH
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVS 259 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l 259 (600)
.+.|.|++|+|||+||+.+.. ... ...+.+++....+..+++
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~--~lg---~~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVAR--KRD---RPVMLINGDAELTTSDLV 64 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHH--HhC---CCEEEEeCCccCCHHHHh
Confidence 567999999999999999875 221 123456666655555554
No 123
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.71 E-value=0.0023 Score=60.97 Aligned_cols=184 Identities=19% Similarity=0.205 Sum_probs=108.6
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeC-CCCCHHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVS-EDFDVFTVSKSILNSIASDQCT-DKDDLNLLQEKLKK 286 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs-~~~~~~~~l~~il~~l~~~~~~-~~~~~~~l~~~l~~ 286 (600)
.+.+++.|+|.-|.|||.+.+....... =+.++-+.+. ...+...+...++..+..+... ...-.++....|..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 3456999999999999999995443211 1112223333 3456777888888888763221 11123333444444
Q ss_pred Hh-CCCc-EEEEEecCCCCChhhHHhhcCCCCC---CCCCcEEEEeccCh--------HHHhhcCccce-eecCCCCHHH
Q 039283 287 QL-SGKK-FLLVLDDVWNENYNSWRALSCPFGA---GASGSKIVVTHRNQ--------GVAETMRAVST-KTLKELSDDD 352 (600)
Q Consensus 287 ~L-~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~---~~~gs~IlvTtR~~--------~v~~~~~~~~~-~~l~~L~~~e 352 (600)
.. ++++ ..+++|+.+.......+.++..... ....-+|++.-..+ .....-..... |.+.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 44 4566 9999999987766666555433222 11122344433322 11111112234 9999999999
Q ss_pred HHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhh
Q 039283 353 CLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGL 397 (600)
Q Consensus 353 a~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~ 397 (600)
...++.....+... +.+--..+....|.....|.|.+|..++..
T Consensus 205 t~~yl~~~Le~a~~-~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 205 TGLYLRHRLEGAGL-PEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHHHHhccCC-CcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 99888877654422 111122356778889999999999887644
No 124
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.70 E-value=0.0059 Score=69.99 Aligned_cols=165 Identities=21% Similarity=0.217 Sum_probs=85.6
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|.+.-++.|.+++............++.++|++|+|||++|+.+.+.. ...| +-++++...+..++...
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l--~~~~---~~i~~~~~~~~~~i~g~-- 392 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL--NRKF---VRFSLGGVRDEAEIRGH-- 392 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh--cCCe---EEEeCCCcccHHHHcCC--
Confidence 4478999999998887643211112234589999999999999999998742 2222 22233332232222110
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChh----hHHhhcCCC--------CCC-------CCCcEE
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN----SWRALSCPF--------GAG-------ASGSKI 324 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~----~~~~l~~~l--------~~~-------~~gs~I 324 (600)
. ... .......+.+.+..... ++-+|+||.++..... ....+...+ .+. ..+..+
T Consensus 393 ---~-~~~-~g~~~g~i~~~l~~~~~-~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~ 466 (775)
T TIGR00763 393 ---R-RTY-VGAMPGRIIQGLKKAKT-KNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVIF 466 (775)
T ss_pred ---C-Cce-eCCCCchHHHHHHHhCc-CCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEEE
Confidence 0 000 11112223334444333 3347899999654221 111222211 111 123444
Q ss_pred EEeccChH-H-HhhcCccceeecCCCCHHHHHHHHHHhh
Q 039283 325 VVTHRNQG-V-AETMRAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 325 lvTtR~~~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
|.||.... + .........+.+.+++.++-.+++.++.
T Consensus 467 I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 467 IATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 55554431 1 1112344688999999998888886653
No 125
>PRK10536 hypothetical protein; Provisional
Probab=97.68 E-value=0.0012 Score=63.87 Aligned_cols=135 Identities=11% Similarity=0.180 Sum_probs=75.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEE----eCC-----CCC
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTC----VSE-----DFD 254 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~----vs~-----~~~ 254 (600)
..+.+|......+..++.+. .++.++|++|+|||+||..+..+.-....|...+-.. .++ +.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 34678888889999988532 4999999999999999988776432233344333221 111 011
Q ss_pred HHHH----HHHHHHHhhcCCCCCcccHHHHHH--------HHHHHhCCCcE---EEEEecCCCCChhhHHhhcCCCCCCC
Q 039283 255 VFTV----SKSILNSIASDQCTDKDDLNLLQE--------KLKKQLSGKKF---LLVLDDVWNENYNSWRALSCPFGAGA 319 (600)
Q Consensus 255 ~~~~----l~~il~~l~~~~~~~~~~~~~l~~--------~l~~~L~~k~~---LlVlDdv~~~~~~~~~~l~~~l~~~~ 319 (600)
..+- +..+...|..-. .....+.+.. .=..+++|+.+ +||+|.+.+.+......+...+ +
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g 201 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---G 201 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---C
Confidence 2111 122222221100 0011111100 01235566554 9999999888776666665444 4
Q ss_pred CCcEEEEeccCh
Q 039283 320 SGSKIVVTHRNQ 331 (600)
Q Consensus 320 ~gs~IlvTtR~~ 331 (600)
.+|++|+|--..
T Consensus 202 ~~sk~v~~GD~~ 213 (262)
T PRK10536 202 ENVTVIVNGDIT 213 (262)
T ss_pred CCCEEEEeCChh
Confidence 689999887543
No 126
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.67 E-value=0.0004 Score=74.28 Aligned_cols=167 Identities=11% Similarity=0.133 Sum_probs=90.1
Q ss_pred CccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc---cCCceEEEEeCCCC
Q 039283 184 DEVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR---HFQIKAWTCVSEDF 253 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs~~~ 253 (600)
..+.|.+..+++|.+.+.-+-. -+-..++-+.++|++|+|||++|+.+++...... ......++++...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 3477899999999887642110 0112456689999999999999999988532110 1123345554432
Q ss_pred CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCC-------hhh-----HHhhcCCCCCC--
Q 039283 254 DVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNEN-------YNS-----WRALSCPFGAG-- 318 (600)
Q Consensus 254 ~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~-- 318 (600)
+ ++....+. .......+.+..+.. ..+++++|+||+++... ... ...+...+...
T Consensus 261 ---e----Ll~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 261 ---E----LLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred ---h----hcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 1 11111000 111112222222222 23579999999996321 001 12333333221
Q ss_pred CCCcEEEEeccChHHHh-hc-C--c-cceeecCCCCHHHHHHHHHHhh
Q 039283 319 ASGSKIVVTHRNQGVAE-TM-R--A-VSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 319 ~~gs~IlvTtR~~~v~~-~~-~--~-~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
..+..||.||....... .+ . . ...+.+...+.++..++|.++.
T Consensus 331 ~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 331 LDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13455666665443221 11 1 1 2468999999999999998875
No 127
>PRK08116 hypothetical protein; Validated
Probab=97.66 E-value=0.00016 Score=71.54 Aligned_cols=104 Identities=22% Similarity=0.214 Sum_probs=58.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
..+.|+|.+|+|||.||..+++.... ....+++++ ..+++..+........ ..+... +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~--~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIE--KGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEE------HHHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 35889999999999999999985432 233445554 3445555554443221 112222 23334433
Q ss_pred cEEEEEecCCCCChhhHHh--hcCCCCCC-CCCcEEEEeccCh
Q 039283 292 KFLLVLDDVWNENYNSWRA--LSCPFGAG-ASGSKIVVTHRNQ 331 (600)
Q Consensus 292 ~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~IlvTtR~~ 331 (600)
. ||||||+.......|.. +...+... ..+..+|+||...
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 3 89999996443344433 22222211 2355688888653
No 128
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.0014 Score=66.87 Aligned_cols=93 Identities=16% Similarity=0.165 Sum_probs=66.4
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCC
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDF 367 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 367 (600)
++.=++|+|+++..+....+.++..+..-.+++.+|++|.+. .+. +..+....+.+.+++.++..+.+.+.. .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~---~-- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG---V-- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC---C--
Confidence 445588999999999889999998887777777776666553 333 333455789999999999999887642 1
Q ss_pred CCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 368 NIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 368 ~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
++ ...++..++|.|+....+
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHH
Confidence 11 123577889999755444
No 129
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.66 E-value=0.00025 Score=62.38 Aligned_cols=88 Identities=18% Similarity=0.052 Sum_probs=45.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC-
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG- 290 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~- 290 (600)
..+.|+|++|+||||+++.++..... .....+.++.+........... .................. .+......
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGP--PGGGVIYIDGEDILEEVLDQLL--LIIVGGKKASGSGELRLR-LALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCC--CCCCEEEECCEEccccCHHHHH--hhhhhccCCCCCHHHHHH-HHHHHHHhc
Confidence 57899999999999999999874321 1123455554433222111111 111111110122222222 33333333
Q ss_pred CcEEEEEecCCCCC
Q 039283 291 KKFLLVLDDVWNEN 304 (600)
Q Consensus 291 k~~LlVlDdv~~~~ 304 (600)
+..+|++|++....
T Consensus 78 ~~~viiiDei~~~~ 91 (148)
T smart00382 78 KPDVLILDEITSLL 91 (148)
T ss_pred CCCEEEEECCcccC
Confidence 35999999997653
No 130
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.66 E-value=0.00016 Score=76.18 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=87.5
Q ss_pred ccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
.+.|.+..+++|.+.+.-+-. -+-....-+.|+|++|+|||+||+.+++. ....| +.+... +
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f-----i~V~~s----e 252 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF-----LRVVGS----E 252 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE-----EEEecc----h
Confidence 468999999998887742110 01134567889999999999999999873 22223 222111 1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hh---hHHhhcCCCCC--CCCC
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------YN---SWRALSCPFGA--GASG 321 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~g 321 (600)
+ ..... ......+...+.....+.+.+|+||+++... .. ....++..+.. ...+
T Consensus 253 L----~~k~~------Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~ 322 (438)
T PTZ00361 253 L----IQKYL------GDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGD 322 (438)
T ss_pred h----hhhhc------chHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCC
Confidence 1 11111 1111222233333334678899999974210 00 01112222211 1235
Q ss_pred cEEEEeccChHHHhh-c---C-ccceeecCCCCHHHHHHHHHHhhc
Q 039283 322 SKIVVTHRNQGVAET-M---R-AVSTKTLKELSDDDCLRVLIQHSL 362 (600)
Q Consensus 322 s~IlvTtR~~~v~~~-~---~-~~~~~~l~~L~~~ea~~Lf~~~a~ 362 (600)
..||+||........ + + -...+.+...+.++..++|..+..
T Consensus 323 V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 323 VKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred eEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 678888875533322 1 1 235788999999999999987653
No 131
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.61 E-value=0.0021 Score=66.16 Aligned_cols=275 Identities=13% Similarity=0.168 Sum_probs=148.8
Q ss_pred ccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHH-HHHhhhhhhhccCCceEEEEeCCC---CCHHHHHHHHHH
Q 039283 189 REKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLA-QLVNKDDRVQRHFQIKAWTCVSED---FDVFTVSKSILN 264 (600)
Q Consensus 189 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA-~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~l~~il~ 264 (600)
|.+..++|..||.... -..|.|.||-|+||+.|+ .++..+.+ .+..+++.+- -+-..++..++.
T Consensus 1 R~e~~~~L~~wL~e~~------~TFIvV~GPrGSGK~elV~d~~L~~r~------~vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP------NTFIVVQGPRGSGKRELVMDHVLKDRK------NVLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCC------CeEEEEECCCCCCccHHHHHHHHhCCC------CEEEEEChHhhhccChHHHHHHHHH
Confidence 5677899999996543 369999999999999999 66655322 2444443211 112223333333
Q ss_pred Hhh-----------------------cCCCC-CcccHHHHHHH-------HHH-------------------Hh---CCC
Q 039283 265 SIA-----------------------SDQCT-DKDDLNLLQEK-------LKK-------------------QL---SGK 291 (600)
Q Consensus 265 ~l~-----------------------~~~~~-~~~~~~~l~~~-------l~~-------------------~L---~~k 291 (600)
++| +.... ......++... |+. +| ..+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 222 21110 11111222211 111 11 123
Q ss_pred cEEEEEecCCCCC---------hhhHHhhcCCCCCCCCCcEEEEeccChHHHhh----c--CccceeecCCCCHHHHHHH
Q 039283 292 KFLLVLDDVWNEN---------YNSWRALSCPFGAGASGSKIVVTHRNQGVAET----M--RAVSTKTLKELSDDDCLRV 356 (600)
Q Consensus 292 ~~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~----~--~~~~~~~l~~L~~~ea~~L 356 (600)
+-+||+||+.... ..+|...+ .. .+-.+||++|-+...... + ..+..+.|.-.+++.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~L---v~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASL---VQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHH---Hh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 6799999984322 12343322 22 234578888876544332 2 2457889999999999999
Q ss_pred HHHhhcCCCCC------------CC----ChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCCChhH-HHHHHHhcccccc
Q 039283 357 LIQHSLGARDF------------NI----PQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLND-WEIVLNANIWDLQ 419 (600)
Q Consensus 357 f~~~a~~~~~~------------~~----~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~-w~~~l~~~~~~~~ 419 (600)
...+....... .. ...........++.+||--.=+..+++.++...++.+ -..+.++.
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~qs----- 299 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIISQS----- 299 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHH-----
Confidence 99887543110 00 0124455677888999999999999999998865542 22333221
Q ss_pred CCCccchHHHHHhhh-------CCChhHHHHHHHhccCCCCCcccHHHHHHHHHHcCCcccccCCccHHHHHHHHHHHHh
Q 039283 420 EDKCDIIPALRVSYH-------FLPPQLKQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQEYNGRKMEDLGRQFVRELH 492 (600)
Q Consensus 420 ~~~~~i~~~l~~sy~-------~L~~~~k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~ 492 (600)
+..+.+.-+. .++=...+.+..+-.+.+...++...++.- .+.. + ..+..|.+|.
T Consensus 300 -----a~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~~v~Y~~ll~~----~lFk---~------~~E~~L~aLe 361 (431)
T PF10443_consen 300 -----ASEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKNDEVPYNELLLS----PLFK---G------NDETALRALE 361 (431)
T ss_pred -----HHHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCCcCcHHHHHcc----cccC---C------CChHHHHHHH
Confidence 1111221111 111122334444444455555666655531 0111 1 1233689999
Q ss_pred hCCCcccccC
Q 039283 493 SRSLFQLSSK 502 (600)
Q Consensus 493 ~rsLl~~~~~ 502 (600)
+..||.....
T Consensus 362 ~aeLItv~~~ 371 (431)
T PF10443_consen 362 QAELITVTTD 371 (431)
T ss_pred HCCcEEEEec
Confidence 9999976653
No 132
>CHL00176 ftsH cell division protein; Validated
Probab=97.59 E-value=0.00097 Score=73.82 Aligned_cols=177 Identities=16% Similarity=0.230 Sum_probs=96.4
Q ss_pred CccccccchHHHHHHHH---hcCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELL---LRDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L---~~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..+.|.++..+++.+.+ ..... -+....+-+.++|++|+|||+||+.++... . .-++.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~-----~p~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--E-----VPFFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--C-----CCeeeccHH----H
Confidence 34778877666555543 32211 011234568999999999999999998632 1 123333211 1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC----------hhh----HHhhcCCCCC--CCCC
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN----------YNS----WRALSCPFGA--GASG 321 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~--~~~g 321 (600)
+ ..... ......+...+.......+++|+|||++... ... +..++..+.. ...+
T Consensus 252 f----~~~~~------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 F----VEMFV------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred H----HHHhh------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 1 11110 1112233444555556789999999995321 111 2223322221 2345
Q ss_pred cEEEEeccChHHHhh-c-C---ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcC
Q 039283 322 SKIVVTHRNQGVAET-M-R---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKG 386 (600)
Q Consensus 322 s~IlvTtR~~~v~~~-~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~G 386 (600)
..||.||........ + . -...+.+...+.++-.+++..++.... .. .......+++.+.|
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~~--~d~~l~~lA~~t~G 386 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---LS--PDVSLELIARRTPG 386 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---cc--hhHHHHHHHhcCCC
Confidence 667777765433221 1 1 125788888999999999987764311 11 12345667778877
No 133
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00042 Score=74.75 Aligned_cols=166 Identities=22% Similarity=0.244 Sum_probs=93.0
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 262 (600)
+.+.+|-++-+++|+++|.-......-.-++++++||+|+|||+|++.++. .....| +-++++.--|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkf---vR~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKF---VRISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCE---EEEecCccccHHHh----
Confidence 456789999999999998432211223457999999999999999999987 344445 33455544443322
Q ss_pred HHHhhcCCCC-CcccHHHHHHHHHHHhCCCcEEEEEecCCCCChh----hHHhhcCCCCC---------------CCCCc
Q 039283 263 LNSIASDQCT-DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN----SWRALSCPFGA---------------GASGS 322 (600)
Q Consensus 263 l~~l~~~~~~-~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~---------------~~~gs 322 (600)
.++... -..=...+.+.+++. +-++-|++||.++....+ .-..++..|.+ .-+..
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 111110 111122333444433 346778999998543211 01111111111 11223
Q ss_pred EEEEeccChH--HHhhcCccceeecCCCCHHHHHHHHHHhhc
Q 039283 323 KIVVTHRNQG--VAETMRAVSTKTLKELSDDDCLRVLIQHSL 362 (600)
Q Consensus 323 ~IlvTtR~~~--v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 362 (600)
.+|.|..+-+ .+..+....++++.+-+.+|-.++-+++..
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~Li 509 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLI 509 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcc
Confidence 3333433322 223344568899999999998887776643
No 134
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.58 E-value=0.00096 Score=70.03 Aligned_cols=119 Identities=17% Similarity=0.109 Sum_probs=73.8
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCc
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKK 292 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~ 292 (600)
++.|.|+-++|||||++.+.... .+. .++++..+......-+.+. ...+...-..++
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l~d~------------------~~~~~~~~~~~~ 95 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIELLDL------------------LRAYIELKEREK 95 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhHHHH------------------HHHHHHhhccCC
Confidence 99999999999999996665421 111 4555433221111111111 111111111277
Q ss_pred EEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHHhh------cCccceeecCCCCHHHHHHHH
Q 039283 293 FLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVAET------MRAVSTKTLKELSDDDCLRVL 357 (600)
Q Consensus 293 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~------~~~~~~~~l~~L~~~ea~~Lf 357 (600)
.+|+||.|... ..|......+.+.++. +|++|+-+...... .+....+.+.||+..|-..+.
T Consensus 96 ~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 96 SYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred ceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 89999999554 6888888888776655 88888877643321 234567999999999887653
No 135
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.54 E-value=0.00025 Score=74.06 Aligned_cols=179 Identities=13% Similarity=0.119 Sum_probs=95.7
Q ss_pred CccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..+.|-+..+++|.+.+.-+-. .+-..++-+.++|++|+|||+||+.+++.. ...| +.+.. .
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l--~~~f-----i~i~~----s 213 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT--TATF-----IRVVG----S 213 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEeh----H
Confidence 4578999888888877632100 012346779999999999999999998732 2222 22211 1
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hh---hHHhhcCCCCC--CCC
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------YN---SWRALSCPFGA--GAS 320 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~~ 320 (600)
. +.....+ .....+.+.+.......+.+|+||+++... .. .+..+...+.. ...
T Consensus 214 ~----l~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~ 283 (398)
T PTZ00454 214 E----FVQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT 283 (398)
T ss_pred H----HHHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC
Confidence 1 1111111 111222333334445688999999985310 00 11222222221 124
Q ss_pred CcEEEEeccChHHHhh--cC---ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 321 GSKIVVTHRNQGVAET--MR---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 321 gs~IlvTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
+..||+||........ .. -...+.+...+.++...+|........ ....-+ ...+++.+.|.-
T Consensus 284 ~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~-l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 284 NVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMN-LSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCC-CCcccC----HHHHHHHcCCCC
Confidence 5678888875533221 11 125688888888888888876543221 111122 344566666553
No 136
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.54 E-value=0.0017 Score=60.57 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=35.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhh
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.++||-++-+++|.-... +++.+-+.|.||+|+||||-+..+.+
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 358999999988877663 35678899999999999998866665
No 137
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.51 E-value=0.0012 Score=71.67 Aligned_cols=185 Identities=13% Similarity=0.151 Sum_probs=96.5
Q ss_pred CccccccchHHHHHHHHh---cCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLL---RDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
.+++|-+..++++.+++. .... .+....+-+.++|++|+|||+||+.++... ... ++.++. .+
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~~ 123 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----SD 123 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----HH
Confidence 457888877666655442 1110 012334568999999999999999998632 111 222221 11
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC----------hhhHH----hhcCCCCC--CCCC
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN----------YNSWR----ALSCPFGA--GASG 321 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~----------~~~~~----~l~~~l~~--~~~g 321 (600)
+ ..... ......+...+.......+.+|+||+++... ...+. .++..+.. ...+
T Consensus 124 ~----~~~~~------g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~ 193 (495)
T TIGR01241 124 F----VEMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTG 193 (495)
T ss_pred H----HHHHh------cccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCC
Confidence 1 11111 1122233344444445678999999994321 11111 22222211 2234
Q ss_pred cEEEEeccChHHHh-hc----CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCc-hhHHHHH
Q 039283 322 SKIVVTHRNQGVAE-TM----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL-PLAAKTL 394 (600)
Q Consensus 322 s~IlvTtR~~~v~~-~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~Gl-PLai~~~ 394 (600)
..||.||....... .+ .-...+.+...+.++-.++|......... ... .....+++.+.|. +--|..+
T Consensus 194 v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~~----~~l~~la~~t~G~sgadl~~l 267 (495)
T TIGR01241 194 VIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-APD----VDLKAVARRTPGFSGADLANL 267 (495)
T ss_pred eEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Ccc----hhHHHHHHhCCCCCHHHHHHH
Confidence 56666665543211 11 12357889989998888888876533211 111 2244677787774 3444433
No 138
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.50 E-value=0.0012 Score=75.11 Aligned_cols=135 Identities=17% Similarity=0.217 Sum_probs=77.9
Q ss_pred CccccccchHHHHHHHHhcCCCC---CCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLR---ADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
..++|.+..++.|.+.+...... ......++.++|++|+|||+||+.+.... +...+.++.+.-....
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~---- 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKH---- 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhcc----
Confidence 45789998889888887642110 12234578899999999999999998632 2334555554422211
Q ss_pred HHHHHhhcCCCC-CcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC-----------CCCcEEEEec
Q 039283 261 SILNSIASDQCT-DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG-----------ASGSKIVVTH 328 (600)
Q Consensus 261 ~il~~l~~~~~~-~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTt 328 (600)
.+...++.+... .......+.+.++. ....+|+||+++..++..++.+...+..+ -.++.||+||
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Ts 601 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTS 601 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECC
Confidence 111112222111 11122223333321 23459999999888877777777766543 1245577777
Q ss_pred cC
Q 039283 329 RN 330 (600)
Q Consensus 329 R~ 330 (600)
..
T Consensus 602 n~ 603 (731)
T TIGR02639 602 NA 603 (731)
T ss_pred Cc
Confidence 54
No 139
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=97.48 E-value=0.0007 Score=76.90 Aligned_cols=166 Identities=21% Similarity=0.235 Sum_probs=89.9
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 262 (600)
+...+|.++-+++|.++|............++.++|++|+||||+|+.+... ....| +-++.+...+..++...-
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~---~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKY---VRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCE---EEEEcCCCCCHHHhccch
Confidence 3458999999999998886321111234468999999999999999999863 22222 223344333332221111
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhh----HHhhcCCCCC---------------CCCCcE
Q 039283 263 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNS----WRALSCPFGA---------------GASGSK 323 (600)
Q Consensus 263 l~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~~~gs~ 323 (600)
....+ .....+.+.+... ....-+|+||.++...... ...+...+.. .-.+..
T Consensus 396 ~~~~g-------~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 396 RTYIG-------SMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred hccCC-------CCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 11111 1112233333332 2234478899996433211 2233322221 113445
Q ss_pred EEEeccChHHHh-hcCccceeecCCCCHHHHHHHHHHhh
Q 039283 324 IVVTHRNQGVAE-TMRAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 324 IlvTtR~~~v~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
+|.|+....+.. .......+.+.+++.++-.++..++.
T Consensus 468 ~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 468 FVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 555664432211 12244688999999999988887665
No 140
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0033 Score=65.44 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=91.8
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
.....+.+.|++|+|||+||..+.. ...|+.+--++..+. ++.+ +......+........
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~m-------------iG~s---EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDM-------------IGLS---ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHc-------------cCcc---HHHHHHHHHHHHHHhh
Confidence 4567788999999999999988864 456876554432211 0100 1112222333444455
Q ss_pred CCCcEEEEEecCCCCChhhHH------------h---hcCCCCCCCCCcEEEEeccChHHHhhcCc----cceeecCCCC
Q 039283 289 SGKKFLLVLDDVWNENYNSWR------------A---LSCPFGAGASGSKIVVTHRNQGVAETMRA----VSTKTLKELS 349 (600)
Q Consensus 289 ~~k~~LlVlDdv~~~~~~~~~------------~---l~~~l~~~~~gs~IlvTtR~~~v~~~~~~----~~~~~l~~L~ 349 (600)
++.--.||+||+.. .-+|- . ++...|+.++.--|+-||....+...|+- ...|.++.++
T Consensus 596 kS~lsiivvDdiEr--LiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDIER--LLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcchhh--hhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 66778999999932 12222 2 22233333344456667777788877762 2578888888
Q ss_pred H-HHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh
Q 039283 350 D-DDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 398 (600)
Q Consensus 350 ~-~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L 398 (600)
. ++..+.++..-. -.+...+.++.+...+| +-..|+.+-.++
T Consensus 674 ~~~~~~~vl~~~n~-----fsd~~~~~~~~~~~~~~--~~vgIKklL~li 716 (744)
T KOG0741|consen 674 TGEQLLEVLEELNI-----FSDDEVRAIAEQLLSKK--VNVGIKKLLMLI 716 (744)
T ss_pred chHHHHHHHHHccC-----CCcchhHHHHHHHhccc--cchhHHHHHHHH
Confidence 7 777777765421 12334455666666666 333444444443
No 141
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.42 E-value=0.00071 Score=71.24 Aligned_cols=152 Identities=16% Similarity=0.221 Sum_probs=83.2
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH-H
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI-L 263 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i-l 263 (600)
.++||++.++.+...+..+. .|.|.|++|+|||+||+.+.........|.. +.+.-. ++.+++..+ +
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~---~~~~ft-tp~DLfG~l~i 88 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFAFQNARAFEY---LMTRFS-TPEEVFGPLSI 88 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHHhcccCccee---eeeeec-CcHHhcCcHHH
Confidence 38999999999999987654 6899999999999999998863222223321 111100 122222211 1
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCC---CcEEEEEecCCCCChhhHHhhcCCCCCC-----C----CCcEEEEeccCh
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSG---KKFLLVLDDVWNENYNSWRALSCPFGAG-----A----SGSKIVVTHRNQ 331 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~---k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----~----~gs~IlvTtR~~ 331 (600)
...... ..+.....| ..-++++|+++.........+...+... + -..++++++.++
T Consensus 89 ~~~~~~------------g~f~r~~~G~L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~ 156 (498)
T PRK13531 89 QALKDE------------GRYQRLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNE 156 (498)
T ss_pred hhhhhc------------CchhhhcCCccccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCC
Confidence 111000 001111112 1128999999988777666665554221 1 123565555554
Q ss_pred HHH------hhcCc-cceeecCCCCHH-HHHHHHHHh
Q 039283 332 GVA------ETMRA-VSTKTLKELSDD-DCLRVLIQH 360 (600)
Q Consensus 332 ~v~------~~~~~-~~~~~l~~L~~~-ea~~Lf~~~ 360 (600)
-.. ..+.. .-.+.+++++.+ +-.+++...
T Consensus 157 LPE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 157 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred CcccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 221 11111 246788999854 447777653
No 142
>PRK08181 transposase; Validated
Probab=97.40 E-value=0.00058 Score=67.37 Aligned_cols=101 Identities=20% Similarity=0.100 Sum_probs=54.2
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
..+.|+|++|+|||.||..+.+.. ......+++++ ..+++..+..... ....+.....+ .+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a--~~~g~~v~f~~------~~~L~~~l~~a~~------~~~~~~~l~~l-----~~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL--IENGWRVLFTR------TTDLVQKLQVARR------ELQLESAIAKL-----DK 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH--HHcCCceeeee------HHHHHHHHHHHHh------CCcHHHHHHHH-----hc
Confidence 459999999999999999988743 22233445554 3444444433211 11222222222 23
Q ss_pred cEEEEEecCCCCChhhHH--hhcCCCCCCCCCcEEEEeccCh
Q 039283 292 KFLLVLDDVWNENYNSWR--ALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 292 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
.=||||||+.......|. .+...+.....+..+||||...
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 459999999543322222 2333332211123588888754
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.39 E-value=0.0004 Score=79.75 Aligned_cols=138 Identities=20% Similarity=0.176 Sum_probs=77.8
Q ss_pred CccccccchHHHHHHHHhcCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
..++|.+..++.+.+.+..... .......++.++|++|+|||.||+.+.... -......+-++++.-.+. .
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l--~~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL--YGGEQNLITINMSEFQEA----H 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH--hCCCcceEEEeHHHhhhh----h
Confidence 4689999999999998854211 022345678999999999999999886532 111122222332221110 0
Q ss_pred HHHHHhhcCCCC-CcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEEEec
Q 039283 261 SILNSIASDQCT-DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIVVTH 328 (600)
Q Consensus 261 ~il~~l~~~~~~-~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTt 328 (600)
.+..-++.+... .......+...+++ ....+|+||++...++..++.+...+..+. .++-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 111112221111 11111223333332 455699999998877777777766665442 456677777
Q ss_pred cC
Q 039283 329 RN 330 (600)
Q Consensus 329 R~ 330 (600)
..
T Consensus 717 Nl 718 (852)
T TIGR03345 717 NA 718 (852)
T ss_pred CC
Confidence 54
No 144
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.39 E-value=0.0016 Score=75.19 Aligned_cols=137 Identities=15% Similarity=0.148 Sum_probs=76.3
Q ss_pred CccccccchHHHHHHHHhcCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
..++|.+..++.|...+..... .......++.++|++|+|||+||+.+.... ...-...+.++++.-.. .
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~-~---- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFME-K---- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhh-h----
Confidence 4588999999999888864311 012233578899999999999999987632 11112234444432211 1
Q ss_pred HHHHHhhcCCC-CCcccHHHHHHHHHHHhCCC-cEEEEEecCCCCChhhHHhhcCCCCCC-----------CCCcEEEEe
Q 039283 261 SILNSIASDQC-TDKDDLNLLQEKLKKQLSGK-KFLLVLDDVWNENYNSWRALSCPFGAG-----------ASGSKIVVT 327 (600)
Q Consensus 261 ~il~~l~~~~~-~~~~~~~~l~~~l~~~L~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvT 327 (600)
.....+.+..+ ....+.. ..+.+.++.+ .-+|+||++...+...+..+...+..+ -.++.||+|
T Consensus 641 ~~~~~LiG~~pgy~g~~~~---g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~T 717 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEG---GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMT 717 (857)
T ss_pred hhHHHHhCCCCcccccchh---HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEe
Confidence 11222222211 1111111 1122333223 359999999887777777776655432 123447788
Q ss_pred ccC
Q 039283 328 HRN 330 (600)
Q Consensus 328 tR~ 330 (600)
|..
T Consensus 718 SN~ 720 (857)
T PRK10865 718 SNL 720 (857)
T ss_pred CCc
Confidence 875
No 145
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.39 E-value=0.0064 Score=65.67 Aligned_cols=208 Identities=14% Similarity=0.090 Sum_probs=118.6
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhh---hhccCC--ceEEEEeCCCCCHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDR---VQRHFQ--IKAWTCVSEDFDVFTV 258 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~---~~~~F~--~~~wv~vs~~~~~~~~ 258 (600)
..+-+|+.|..+|...+...-. .++..+.+-|.|-+|+|||..+..|.+... .++.-+ ..+.|+.-.-..+.++
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~-~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS-DQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREI 474 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC-CCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHH
Confidence 3467999999999988865432 123445899999999999999999987532 112222 2344555555678999
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhC-----CCcEEEEEecCCCCChhhHHhhcCCCCC-CCCCcEEEEeccCh-
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLS-----GKKFLLVLDDVWNENYNSWRALSCPFGA-GASGSKIVVTHRNQ- 331 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~-----~k~~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~IlvTtR~~- 331 (600)
+..|...+.+... ......+.|..+.. .+++++++|+++..-...-+-+...|.+ ..++++++|-+-..
T Consensus 475 Y~~I~~~lsg~~~----~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNT 550 (767)
T KOG1514|consen 475 YEKIWEALSGERV----TWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANT 550 (767)
T ss_pred HHHHHHhcccCcc----cHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEeccc
Confidence 9999999987643 23333444444443 3678999998743211112223333433 24677766654321
Q ss_pred -HHH-hhcC-------ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhh
Q 039283 332 -GVA-ETMR-------AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGL 397 (600)
Q Consensus 332 -~v~-~~~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~ 397 (600)
+.. ..+. +...+...|-+.++-.++...+..+... ..+...+=++++++.-.|-.-.|+...-++
T Consensus 551 mdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 551 MDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 000 0110 2345666677777766666655433311 222333444555555555555555554444
No 146
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.38 E-value=0.0019 Score=63.70 Aligned_cols=174 Identities=19% Similarity=0.137 Sum_probs=96.9
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCH-HHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDV-FTVSKSI 262 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~l~~i 262 (600)
..++|-.++..++.+|+.+.- -.++...|.|+||.|.|||+|......+ .+..-+..+-|.+...... .-.++.|
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~--~~gEsnsviiigprgsgkT~li~~~Ls~--~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTI--LHGESNSVIIIGPRGSGKTILIDTRLSD--IQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred cceeehHHHHHHHHHHHHHHH--HhcCCCceEEEccCCCCceEeeHHHHhh--HHhcCCeEEEEEECccchhhHHHHHHH
Confidence 358899999999999986542 1244568899999999999999877765 2222223344444443322 2345555
Q ss_pred HHHhhcCCCC---CcccHHHHHHHHHHHhC------CCcEEEEEecCCCCChhh-----HHhhcCCCCCCCCCcEEEEec
Q 039283 263 LNSIASDQCT---DKDDLNLLQEKLKKQLS------GKKFLLVLDDVWNENYNS-----WRALSCPFGAGASGSKIVVTH 328 (600)
Q Consensus 263 l~~l~~~~~~---~~~~~~~l~~~l~~~L~------~k~~LlVlDdv~~~~~~~-----~~~l~~~l~~~~~gs~IlvTt 328 (600)
..++...-.. ...+..+-...+-..|+ +-++++|+|.++-.-.-. +..+-..=....|-|.|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5555432110 12222223334444443 246888888874321111 111111111234567788999
Q ss_pred cChHH-------HhhcCccceeecCCCCHHHHHHHHHHhh
Q 039283 329 RNQGV-------AETMRAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 329 R~~~v-------~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
|-... -.......++-++.++.++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 97532 2222222355667788888888887765
No 147
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.38 E-value=0.00085 Score=77.57 Aligned_cols=137 Identities=17% Similarity=0.202 Sum_probs=78.6
Q ss_pred CccccccchHHHHHHHHhcCCCC---CCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLR---ADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
..++|.+..++.+...+...... ......++.++|++|+|||++|+.+.... ...-...+.++++.-.... .
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l--~~~~~~~i~~d~s~~~~~~-~-- 639 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL--FDDEDAMVRIDMSEYMEKH-S-- 639 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh--cCCCCcEEEEechhhcccc-h--
Confidence 45899999999999998653210 11234678899999999999999987632 1111233444444322211 1
Q ss_pred HHHHHh-hcCCCC-CcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC-----------CCCcEEEEe
Q 039283 261 SILNSI-ASDQCT-DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG-----------ASGSKIVVT 327 (600)
Q Consensus 261 ~il~~l-~~~~~~-~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvT 327 (600)
...+ +.+... .......+...++. ....+|+||++...++..+..+...+..+ -.++.||+|
T Consensus 640 --~~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~T 714 (852)
T TIGR03346 640 --VARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMT 714 (852)
T ss_pred --HHHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEe
Confidence 1122 211110 11111223333322 23349999999988888888877766443 134457777
Q ss_pred ccC
Q 039283 328 HRN 330 (600)
Q Consensus 328 tR~ 330 (600)
|..
T Consensus 715 Sn~ 717 (852)
T TIGR03346 715 SNL 717 (852)
T ss_pred CCc
Confidence 764
No 148
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.37 E-value=0.0012 Score=63.74 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=51.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHH--------hhcCCCCCcccHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNS--------IASDQCTDKDDLNLL 280 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~--------l~~~~~~~~~~~~~l 280 (600)
..-.++.|+|++|+|||++|.+++... ...-..++|++.. .++...+. ++... +.........+..+.
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~--~~~~~~v~yi~~e-~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEA--AKNGKKVIYIDTE-GLSPERFK-QIAGEDFEELLSNIIIFEPSSFEEQSEA 96 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEECC-CCCHHHHH-HHHhhChHhHhhCeEEEeCCCHHHHHHH
Confidence 345799999999999999998887643 2334667899887 55554432 23222 111111011122223
Q ss_pred HHHHHHHhCCCcEEEEEecC
Q 039283 281 QEKLKKQLSGKKFLLVLDDV 300 (600)
Q Consensus 281 ~~~l~~~L~~k~~LlVlDdv 300 (600)
.+.+...+..+.-++|+|.+
T Consensus 97 i~~~~~~~~~~~~lvVIDsi 116 (225)
T PRK09361 97 IRKAEKLAKENVGLIVLDSA 116 (225)
T ss_pred HHHHHHHHHhcccEEEEeCc
Confidence 33444444456678888887
No 149
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.35 E-value=0.0022 Score=65.43 Aligned_cols=103 Identities=19% Similarity=0.171 Sum_probs=63.2
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCc-eEEEEeCCCC-CHHHHHHHHHHHhhcC
Q 039283 192 DKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQI-KAWTCVSEDF-DVFTVSKSILNSIASD 269 (600)
Q Consensus 192 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~-~~~~~l~~il~~l~~~ 269 (600)
-..++++.+..-. .-+-+.|+|++|+|||||++.+.+.... ++-+. .+|+.+.+.. .+.++...+...+...
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~-~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvas 192 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAA-NHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAS 192 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEEecCCCCCHHHHHHHHhhhEEee
Confidence 3345777775432 3356799999999999999998874322 22233 3676666544 6788888887776654
Q ss_pred CCCCcccHH-H---HHHHHHHHh--CCCcEEEEEecC
Q 039283 270 QCTDKDDLN-L---LQEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 270 ~~~~~~~~~-~---l~~~l~~~L--~~k~~LlVlDdv 300 (600)
......... . ....+.+++ .+++++||+|++
T Consensus 193 t~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 193 TFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 321111111 1 111122222 489999999999
No 150
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.35 E-value=0.00096 Score=64.99 Aligned_cols=91 Identities=21% Similarity=0.177 Sum_probs=53.9
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhcc----CCceEEEEeCCCCCHHHHHHHHHHHhhcCCC-----------CC
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH----FQIKAWTCVSEDFDVFTVSKSILNSIASDQC-----------TD 273 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~-----------~~ 273 (600)
..-.++.|+|++|+|||+|+.+++........ -..++|++....++..++ .++++..+.... ..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 34579999999999999999988753222211 357889998887765444 333333322110 01
Q ss_pred cccHHHHHHHHHHHhC-C-CcEEEEEecC
Q 039283 274 KDDLNLLQEKLKKQLS-G-KKFLLVLDDV 300 (600)
Q Consensus 274 ~~~~~~l~~~l~~~L~-~-k~~LlVlDdv 300 (600)
..+.......+.+.+. . +.-|||+|.+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 1222233344444443 3 5668899988
No 151
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.00056 Score=75.75 Aligned_cols=135 Identities=19% Similarity=0.267 Sum_probs=83.7
Q ss_pred CccccccchHHHHHHHHhcCCCC---CCCCceEEEEEccCCChHHHHHHHHhhhhhhhccC---CceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLR---ADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF---QIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~~~~~ 257 (600)
..++|.+..+..+.+.+...... ...+..+....||.|||||-||+.+... -| +..+-++.|+-.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~DMSEy~---- 561 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRIDMSEYM---- 561 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeechHHHH----
Confidence 45899999999999988654321 2345567788999999999999988752 24 334444444321
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcE-EEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEE
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKF-LLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIV 325 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~Il 325 (600)
-+.-.+.|-+.++ .-...++ --.|-+..+.+|| +|.||++...+++-++.+.+.|..+. .++-||
T Consensus 562 -EkHsVSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiII 638 (786)
T COG0542 562 -EKHSVSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIII 638 (786)
T ss_pred -HHHHHHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEE
Confidence 1122233333322 1111111 1234455566777 88899998888888888887776541 345677
Q ss_pred EeccC
Q 039283 326 VTHRN 330 (600)
Q Consensus 326 vTtR~ 330 (600)
+||.-
T Consensus 639 mTSN~ 643 (786)
T COG0542 639 MTSNA 643 (786)
T ss_pred Eeccc
Confidence 77753
No 152
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.32 E-value=0.00054 Score=65.84 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=28.3
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEe
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCV 249 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~v 249 (600)
-.++|.|.+|+|||||+..+..+ ....|..+++++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~--~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYY--LRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh--hcccCCEEEEEec
Confidence 36789999999999999888863 5567876666643
No 153
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.31 E-value=0.0016 Score=66.78 Aligned_cols=145 Identities=12% Similarity=0.083 Sum_probs=86.2
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc-------------------cCCceE
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR-------------------HFQIKA 245 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~-------------------~F~~~~ 245 (600)
.++|-+....++..+..... .....+.++|++|+||||+|..+.+..--.. ..+...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677788888888886432 1233599999999999999988876432111 112334
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCc
Q 039283 246 WTCVSEDFD---VFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGS 322 (600)
Q Consensus 246 wv~vs~~~~---~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 322 (600)
.++.+.... ..+..+.+.+....... .++.-++++|+++..+...-..+...+......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 444443333 22333333333222110 3567799999998877767777777776666778
Q ss_pred EEEEeccCh-HHHh-hcCccceeecCCCCH
Q 039283 323 KIVVTHRNQ-GVAE-TMRAVSTKTLKELSD 350 (600)
Q Consensus 323 ~IlvTtR~~-~v~~-~~~~~~~~~l~~L~~ 350 (600)
.+|++|... .+.. .-.....+.+.+.+.
T Consensus 141 ~~il~~n~~~~il~tI~SRc~~i~f~~~~~ 170 (325)
T COG0470 141 RFILITNDPSKILPTIRSRCQRIRFKPPSR 170 (325)
T ss_pred EEEEEcCChhhccchhhhcceeeecCCchH
Confidence 888888743 2222 112335666666333
No 154
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.29 E-value=0.0013 Score=61.83 Aligned_cols=131 Identities=20% Similarity=0.295 Sum_probs=64.5
Q ss_pred cccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeC----CCC-----CHH--
Q 039283 188 GREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVS----EDF-----DVF-- 256 (600)
Q Consensus 188 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs----~~~-----~~~-- 256 (600)
.+..+-....+.|... .++.+.|++|.|||.||-...-+.-..+.|+..+++.-. +.. +..
T Consensus 4 p~~~~Q~~~~~al~~~--------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN--------DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 4455566677777532 499999999999999997776555445677777765321 111 100
Q ss_pred --HHHHHHHHHhhcCCCCCcccHHHHHHH------HHHHhCCC---cEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEE
Q 039283 257 --TVSKSILNSIASDQCTDKDDLNLLQEK------LKKQLSGK---KFLLVLDDVWNENYNSWRALSCPFGAGASGSKIV 325 (600)
Q Consensus 257 --~~l~~il~~l~~~~~~~~~~~~~l~~~------l~~~L~~k---~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il 325 (600)
-.+..+...+..-. .....+.+.+. -..+++|+ ..+||+|++.+....++..+...+ +.||++|
T Consensus 76 ~~p~~~p~~d~l~~~~--~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii 150 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF--GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKII 150 (205)
T ss_dssp --TTTHHHHHHHTTTS---TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEE
T ss_pred HHHHHHHHHHHHHHHh--ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEE
Confidence 01111222221110 11122222211 01234453 569999999888877887776554 4689999
Q ss_pred EeccCh
Q 039283 326 VTHRNQ 331 (600)
Q Consensus 326 vTtR~~ 331 (600)
++--..
T Consensus 151 ~~GD~~ 156 (205)
T PF02562_consen 151 ITGDPS 156 (205)
T ss_dssp EEE---
T ss_pred EecCce
Confidence 987543
No 155
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.29 E-value=0.004 Score=63.40 Aligned_cols=71 Identities=13% Similarity=0.105 Sum_probs=47.4
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH-HHhh-cCccceeecCCCCHHHHHHHHHHh
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG-VAET-MRAVSTKTLKELSDDDCLRVLIQH 360 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~~~-~~~~~~~~l~~L~~~ea~~Lf~~~ 360 (600)
+++=++|+|++...+...-..+...+.....++.+|++|.+.. +... ......+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556799988777776676666554445566777777653 3322 224478899999999999888654
No 156
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.28 E-value=0.00092 Score=67.43 Aligned_cols=122 Identities=18% Similarity=0.174 Sum_probs=68.4
Q ss_pred cccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhh
Q 039283 188 GREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIA 267 (600)
Q Consensus 188 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~ 267 (600)
+|........+++..-. .....+-+.|+|+.|+|||.||..+++... ..-..+.++++ .+++..+-....
T Consensus 135 ~~~~~~~~~~~fi~~~~--~~~~~~gl~L~G~~G~GKThLa~Aia~~l~--~~g~~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYP--PGEKVKGLYLYGDFGVGKSYLLAAIANELA--KKGVSSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhh--ccCCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCEEEEEH------HHHHHHHHHHHh
Confidence 45444555566664322 112346799999999999999999998543 22223455543 345555554442
Q ss_pred cCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHh--hcCCC-CCC-CCCcEEEEeccC
Q 039283 268 SDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRA--LSCPF-GAG-ASGSKIVVTHRN 330 (600)
Q Consensus 268 ~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~IlvTtR~ 330 (600)
.. +.. +.+.. ++ +.=||||||+.......|.. +...+ ... ..+..+|+||..
T Consensus 205 ~~------~~~---~~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 DG------SVK---EKIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred cC------cHH---HHHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11 122 22222 22 45589999997665566753 43333 211 134457777753
No 157
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.25 E-value=0.0013 Score=75.94 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=78.5
Q ss_pred CccccccchHHHHHHHHhcCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
..++|.+..++.|...+..... ........+.++|++|+|||+||+.+.... -..-...+-++.+.-.+...+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l--~~~~~~~~~~d~s~~~~~~~~-- 584 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF--FGSEDAMIRLDMSEYMEKHTV-- 584 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh--cCCccceEEEEchhccccccH--
Confidence 4689999999999888853211 012234567799999999999999887632 111122334444432221111
Q ss_pred HHHHHhhcCCCC-CcccHHHHHHHHHHHhCCCc-EEEEEecCCCCChhhHHhhcCCCCCC-----------CCCcEEEEe
Q 039283 261 SILNSIASDQCT-DKDDLNLLQEKLKKQLSGKK-FLLVLDDVWNENYNSWRALSCPFGAG-----------ASGSKIVVT 327 (600)
Q Consensus 261 ~il~~l~~~~~~-~~~~~~~l~~~l~~~L~~k~-~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvT 327 (600)
..-++.+... ....... +.+.++.++ .+++||++...++..++.+...+..+ ...+.||+|
T Consensus 585 --~~l~g~~~gyvg~~~~~~----l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 585 --SKLIGSPPGYVGYNEGGQ----LTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred --HHhcCCCCcccCcCccch----HHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 1112211110 1111122 333444445 58999999888888888877766543 245667777
Q ss_pred ccCh
Q 039283 328 HRNQ 331 (600)
Q Consensus 328 tR~~ 331 (600)
|...
T Consensus 659 sn~g 662 (821)
T CHL00095 659 SNLG 662 (821)
T ss_pred CCcc
Confidence 7643
No 158
>PRK08118 topology modulation protein; Reviewed
Probab=97.23 E-value=0.00016 Score=66.33 Aligned_cols=34 Identities=29% Similarity=0.576 Sum_probs=26.6
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhh-ccCCceEE
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQ-RHFQIKAW 246 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~-~~F~~~~w 246 (600)
.|.|+|++|+||||||+.+++..... -+|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58999999999999999999864433 34666665
No 159
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.23 E-value=0.00047 Score=63.81 Aligned_cols=102 Identities=19% Similarity=0.196 Sum_probs=49.9
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
..-+.|+|++|+|||.||..+.+.... +-..+.|++ ..+++.. +..... ..........+ .
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~--~g~~v~f~~------~~~L~~~----l~~~~~--~~~~~~~~~~l----~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR--KGYSVLFIT------ASDLLDE----LKQSRS--DGSYEELLKRL----K- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH--TT--EEEEE------HHHHHHH----HHCCHC--CTTHCHHHHHH----H-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc--CCcceeEee------cCceecc----cccccc--ccchhhhcCcc----c-
Confidence 356999999999999999988874322 223355665 3334333 332211 11222222222 2
Q ss_pred CcEEEEEecCCCCChhhHHh--hcCCCCCCCCCcEEEEeccCh
Q 039283 291 KKFLLVLDDVWNENYNSWRA--LSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 291 k~~LlVlDdv~~~~~~~~~~--l~~~l~~~~~gs~IlvTtR~~ 331 (600)
+.=||||||+.......|.. +...+...-....+||||...
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 23588899997654444433 111111110112477788653
No 160
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=97.23 E-value=0.011 Score=60.62 Aligned_cols=45 Identities=20% Similarity=0.352 Sum_probs=34.1
Q ss_pred cchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhh
Q 039283 190 EKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRV 237 (600)
Q Consensus 190 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~ 237 (600)
+.-.+.|.+.+.... .....+|+|.|.=|+|||++.+.+....+.
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~ 46 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEELKE 46 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 344567777776542 256789999999999999999998875443
No 161
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.23 E-value=0.0015 Score=62.32 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=52.6
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHh-h-------cCCCCCcccHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSI-A-------SDQCTDKDDLNLL 280 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l-~-------~~~~~~~~~~~~l 280 (600)
..-.++.|+|++|+|||+++.++.... ......++|++... ++...+.+. .... . ........+....
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~--~~~g~~v~yi~~e~-~~~~rl~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ 85 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA--ARQGKKVVYIDTEG-LSPERFKQI-AEDRPERALSNFIVFEVFDFDEQGVA 85 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCC-CCHHHHHHH-HHhChHHHhcCEEEEECCCHHHHHHH
Confidence 345799999999999999998887642 23456788999876 665554432 2221 0 0000011222233
Q ss_pred HHHHHHHhCC-CcEEEEEecC
Q 039283 281 QEKLKKQLSG-KKFLLVLDDV 300 (600)
Q Consensus 281 ~~~l~~~L~~-k~~LlVlDdv 300 (600)
...+...+.. +.-+||+|.+
T Consensus 86 ~~~l~~~~~~~~~~lvVIDSi 106 (209)
T TIGR02237 86 IQKTSKFIDRDSASLVVVDSF 106 (209)
T ss_pred HHHHHHHHhhcCccEEEEeCc
Confidence 4444444443 4568888987
No 162
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.21 E-value=0.0019 Score=60.75 Aligned_cols=124 Identities=22% Similarity=0.281 Sum_probs=72.3
Q ss_pred CCCCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHH
Q 039283 180 LVNEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVS 259 (600)
Q Consensus 180 ~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l 259 (600)
+++-..++|-+...+.|.+-...-- .+-...-|.+||-.|+|||+|++++.+. +...... -|.|.+.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~------- 122 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFA--EGLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE------- 122 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHH--cCCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH-------
Confidence 3444568999999888876543321 1234457899999999999999999884 3333322 2333221
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCC-CCChhhHHhhcCCCCCC---CCCcEEEEeccCh
Q 039283 260 KSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVW-NENYNSWRALSCPFGAG---ASGSKIVVTHRNQ 331 (600)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~~---~~gs~IlvTtR~~ 331 (600)
+..+...+.+.|+. ...||+|..||+- +.+...+..+...|..+ .+...++..|.|.
T Consensus 123 -------------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNR 183 (287)
T COG2607 123 -------------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNR 183 (287)
T ss_pred -------------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCC
Confidence 11222223333332 3589999999984 23335666666666543 2334455555443
No 163
>PRK04132 replication factor C small subunit; Provisional
Probab=97.19 E-value=0.0063 Score=68.97 Aligned_cols=158 Identities=12% Similarity=0.051 Sum_probs=99.0
Q ss_pred cCCChHHHHHHHHhhhhhhhccCC-ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEE
Q 039283 219 LGGVGKTTLAQLVNKDDRVQRHFQ-IKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVL 297 (600)
Q Consensus 219 ~~GiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVl 297 (600)
|.++||||+|..+++.. ..+.+. ..+-++.++..... .+++++..+....+ . -..+.-++||
T Consensus 574 Ph~lGKTT~A~ala~~l-~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~-~--------------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALAREL-FGENWRHNFLELNASDERGIN-VIREKVKEFARTKP-I--------------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhh-hcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC-c--------------CCCCCEEEEE
Confidence 77899999999998742 112222 34566666544443 33444443322111 0 0124579999
Q ss_pred ecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH-hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHH
Q 039283 298 DDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA-ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKE 375 (600)
Q Consensus 298 Ddv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~ 375 (600)
|+++..+......++..+......+++|++|.+. .+. ...+....+.+.+++.++....+...+.... ...+ .+
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Eg-i~i~---~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG-LELT---EE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcC-CCCC---HH
Confidence 9999988888888888777655667777766654 222 2223457899999999999888876553221 1112 35
Q ss_pred HHHHHHHhhcCchhHHHHHHhh
Q 039283 376 VAEKIVKKCKGLPLAAKTLGGL 397 (600)
Q Consensus 376 ~~~~I~~~~~GlPLai~~~~~~ 397 (600)
....|++.|+|.+..+..+...
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~Lq~ 734 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINILQA 734 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHHHH
Confidence 6788999999998555444333
No 164
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.17 E-value=0.0017 Score=63.02 Aligned_cols=83 Identities=17% Similarity=0.209 Sum_probs=48.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
...+.++|.+|+|||+||..+++.... .-..+++++ ..+++..+-..... .....+. +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~--~g~~v~~it------~~~l~~~l~~~~~~----~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLL--RGKSVLIIT------VADIMSAMKDTFSN----SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEE------HHHHHHHHHHHHhh----ccccHHH----HHHHhc-
Confidence 357899999999999999999885432 223445553 34444444433321 1112222 223344
Q ss_pred CcEEEEEecCCCCChhhHHh
Q 039283 291 KKFLLVLDDVWNENYNSWRA 310 (600)
Q Consensus 291 k~~LlVlDdv~~~~~~~~~~ 310 (600)
+.=||||||+.......|..
T Consensus 162 ~~dlLvIDDig~~~~s~~~~ 181 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEK 181 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHH
Confidence 34488999997655455553
No 165
>PRK06526 transposase; Provisional
Probab=97.17 E-value=0.00073 Score=66.25 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=20.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+.|+|++|+|||+||..+...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999988764
No 166
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=97.16 E-value=0.0016 Score=71.14 Aligned_cols=172 Identities=18% Similarity=0.197 Sum_probs=88.3
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhh--hccCC-ceEEEEeCC---CCCHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRV--QRHFQ-IKAWTCVSE---DFDVFTV 258 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~--~~~F~-~~~wv~vs~---~~~~~~~ 258 (600)
+++|.+..++.+...+... ....+.|+|++|+|||++|+.+++.... ...|. ..-|+.+.- .++...+
T Consensus 66 ~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~ 139 (531)
T TIGR02902 66 EIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGI 139 (531)
T ss_pred HeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCcccc
Confidence 5899999999999877433 3356789999999999999999763221 12232 123443321 1222112
Q ss_pred HHHHHHHhhcCCCCCcccH---HHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCC------------------
Q 039283 259 SKSILNSIASDQCTDKDDL---NLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGA------------------ 317 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~---~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~------------------ 317 (600)
...++.....+........ ..........-+...-+|+||++...+......+...+..
T Consensus 140 ~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~ 219 (531)
T TIGR02902 140 ADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIP 219 (531)
T ss_pred chhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccc
Confidence 1112111000000000000 0000000000022446899999988776666665433211
Q ss_pred ----------CCCCcEEEEe-ccChH-H-HhhcCccceeecCCCCHHHHHHHHHHhhc
Q 039283 318 ----------GASGSKIVVT-HRNQG-V-AETMRAVSTKTLKELSDDDCLRVLIQHSL 362 (600)
Q Consensus 318 ----------~~~gs~IlvT-tR~~~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 362 (600)
.....++|.+ |++.. + .........+.+.+++.++-.+++.+.+-
T Consensus 220 ~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 220 SHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred cchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHH
Confidence 0123466654 44332 1 11112335788999999999998887764
No 167
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.11 E-value=0.0033 Score=59.77 Aligned_cols=157 Identities=18% Similarity=0.206 Sum_probs=88.2
Q ss_pred CccccccchHHH---HHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGREKDKEA---IVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
++++|.+..+.+ |.+.|.++..=++..++-|..+|++|.|||.+|+.+.+..++ .| +.+. ..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--p~-----l~vk----at---- 185 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--PL-----LLVK----AT---- 185 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC--ce-----EEec----hH----
Confidence 457898766543 667776554324567899999999999999999999884322 12 1111 11
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC------------hhhHHhhcCCCCC--CCCCcEEEE
Q 039283 261 SILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN------------YNSWRALSCPFGA--GASGSKIVV 326 (600)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~------------~~~~~~l~~~l~~--~~~gs~Ilv 326 (600)
+-++.... +...+..+.....-+.-+|++.+|.++... .+..+.++..+.. .+.|...|-
T Consensus 186 ---~liGehVG---dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 186 ---ELIGEHVG---DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred ---HHHHHHhh---hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 11111111 111222222222334579999999884211 1223333333332 235666666
Q ss_pred eccChHHHhhcC---ccceeecCCCCHHHHHHHHHHhh
Q 039283 327 THRNQGVAETMR---AVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 327 TtR~~~v~~~~~---~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
.|.+.......- -...++...-+.+|-..++...+
T Consensus 260 aTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~ 297 (368)
T COG1223 260 ATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYA 297 (368)
T ss_pred ecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHH
Confidence 666654443221 12456777778888888888776
No 168
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.10 E-value=0.00048 Score=69.90 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=42.2
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhh
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
.++|-++.++++++++...........+++.|+|++|+||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999976432223456889999999999999999998754
No 169
>PRK09183 transposase/IS protein; Provisional
Probab=97.09 E-value=0.0013 Score=64.82 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+.|+|++|+|||+||..+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46889999999999999998764
No 170
>PRK04296 thymidine kinase; Provisional
Probab=97.07 E-value=0.0012 Score=61.91 Aligned_cols=114 Identities=11% Similarity=-0.041 Sum_probs=62.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHHHhCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT-DKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~-~~~~~~~l~~~l~~~L~~ 290 (600)
.++.|+|+.|.||||++..+.... ..+...++.+. ..++.......++..++..... ......++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~--~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY--EERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH--HHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 478899999999999997777633 22333333332 1112222233455555432210 12234445555554 334
Q ss_pred CcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH
Q 039283 291 KKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG 332 (600)
Q Consensus 291 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 332 (600)
+.-+||+|.+...+.+...++...+. ..|..|++|.++..
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 55699999995543333333333322 35788999998753
No 171
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.04 E-value=0.0027 Score=62.45 Aligned_cols=90 Identities=24% Similarity=0.224 Sum_probs=52.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC--------CcccH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQR----HFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT--------DKDDL 277 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~--------~~~~~ 277 (600)
.-.+.=|+|++|+|||.|+.+++-...... .=..++|++-...|+..++. +|++........ ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 346888999999999999987764332221 12358899999989887764 455544321100 11223
Q ss_pred HHHHH---HHHHHh-CCCcEEEEEecC
Q 039283 278 NLLQE---KLKKQL-SGKKFLLVLDDV 300 (600)
Q Consensus 278 ~~l~~---~l~~~L-~~k~~LlVlDdv 300 (600)
+++.+ .+...+ .++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 33333 333333 234458889988
No 172
>PRK12377 putative replication protein; Provisional
Probab=97.04 E-value=0.0037 Score=60.89 Aligned_cols=102 Identities=20% Similarity=0.087 Sum_probs=55.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
...+.|+|++|+|||+||..+.+... .....++++++ .+++..+-..... ...... .+. .+ .
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v~~i~~------~~l~~~l~~~~~~-----~~~~~~---~l~-~l-~ 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSVIVVTV------PDVMSRLHESYDN-----GQSGEK---FLQ-EL-C 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH--HcCCCeEEEEH------HHHHHHHHHHHhc-----cchHHH---HHH-Hh-c
Confidence 35789999999999999999998543 33334566654 3444444433321 111112 222 22 3
Q ss_pred CcEEEEEecCCCCChhhHHh--hcCCCCCC-CCCcEEEEeccC
Q 039283 291 KKFLLVLDDVWNENYNSWRA--LSCPFGAG-ASGSKIVVTHRN 330 (600)
Q Consensus 291 k~~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~IlvTtR~ 330 (600)
+.-||||||+.......|.. +...+... ....-+||||..
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 55699999995443334432 22222221 112336777653
No 173
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.00 E-value=0.0027 Score=71.73 Aligned_cols=133 Identities=19% Similarity=0.177 Sum_probs=74.8
Q ss_pred ccccccchHHHHHHHHhcCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 261 (600)
.++|.+..++.|.+.+..... ........+.++|++|+|||.||+.+.... . ...+.++++.-.... .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhcccc----c
Confidence 478999999999888863211 012335678999999999999999887632 1 223444544322111 1
Q ss_pred HHHHhhcCCCCCcc-cHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC-----------CCCcEEEEecc
Q 039283 262 ILNSIASDQCTDKD-DLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG-----------ASGSKIVVTHR 329 (600)
Q Consensus 262 il~~l~~~~~~~~~-~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTtR 329 (600)
+..-++.+...... ....+...++ +....+|+||++...++..+..+...+..+ -.++-||+||.
T Consensus 530 ~~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN 606 (758)
T PRK11034 530 VSRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_pred HHHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCC
Confidence 11112222110111 1112222222 123469999999888777777776655432 12445777774
No 174
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.00 E-value=0.007 Score=58.46 Aligned_cols=90 Identities=17% Similarity=0.067 Sum_probs=55.1
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccC------CceEEEEeCCCCCHHHHHHHHHHHhhcCCC--------CCc
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF------QIKAWTCVSEDFDVFTVSKSILNSIASDQC--------TDK 274 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F------~~~~wv~vs~~~~~~~~l~~il~~l~~~~~--------~~~ 274 (600)
..-.++.|+|++|+|||+|+.++..... ... ..++|++....++...+. .+......... ...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~--~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~ 93 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQ--LPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARP 93 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhh--cccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeC
Confidence 3457999999999999999988865321 222 457899887777665443 33333221100 022
Q ss_pred ccHHHHHHHHHHHhC----CCcEEEEEecCC
Q 039283 275 DDLNLLQEKLKKQLS----GKKFLLVLDDVW 301 (600)
Q Consensus 275 ~~~~~l~~~l~~~L~----~k~~LlVlDdv~ 301 (600)
.+.+++...+....+ .+.-|+|+|.+.
T Consensus 94 ~~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 94 YNGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CCHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 345555555555443 355589999983
No 175
>PRK06921 hypothetical protein; Provisional
Probab=96.99 E-value=0.0023 Score=63.35 Aligned_cols=38 Identities=16% Similarity=0.118 Sum_probs=27.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEe
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCV 249 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~v 249 (600)
...+.++|.+|+|||.||..+++... ......+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~-~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELM-RKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHh-hhcCceEEEEEH
Confidence 46789999999999999999988432 221334556653
No 176
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.99 E-value=0.00019 Score=63.61 Aligned_cols=86 Identities=23% Similarity=0.088 Sum_probs=46.7
Q ss_pred EEEEccCCChHHHHHHHHhhhhhhhccCCc-eEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCc
Q 039283 214 VSIKGLGGVGKTTLAQLVNKDDRVQRHFQI-KAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKK 292 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~ 292 (600)
|.|+|++|+|||+||+.++... .. ..-+.++...+..+++...--. ... .......+...+. ++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~------~~~~~~i~~~~~~~~~dl~g~~~~~-~~~---~~~~~~~l~~a~~-----~~ 66 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL------GRPVIRINCSSDTTEEDLIGSYDPS-NGQ---FEFKDGPLVRAMR-----KG 66 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH------TCEEEEEE-TTTSTHHHHHCEEET--TTT---TCEEE-CCCTTHH-----EE
T ss_pred EEEECCCCCCHHHHHHHHHHHh------hcceEEEEeccccccccceeeeeec-ccc---ccccccccccccc-----ce
Confidence 6899999999999999998733 22 2345677766766554332211 000 0000000111111 78
Q ss_pred EEEEEecCCCCChhhHHhhcCC
Q 039283 293 FLLVLDDVWNENYNSWRALSCP 314 (600)
Q Consensus 293 ~LlVlDdv~~~~~~~~~~l~~~ 314 (600)
.++|||++...+...+..+...
T Consensus 67 ~il~lDEin~a~~~v~~~L~~l 88 (139)
T PF07728_consen 67 GILVLDEINRAPPEVLESLLSL 88 (139)
T ss_dssp EEEEESSCGG--HHHHHTTHHH
T ss_pred eEEEECCcccCCHHHHHHHHHH
Confidence 9999999976555545444333
No 177
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.98 E-value=0.0049 Score=66.12 Aligned_cols=158 Identities=12% Similarity=0.055 Sum_probs=81.3
Q ss_pred ccccccchHHHHHHHHhc--CC--CCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLR--DD--LRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~--~~--~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
.+-|.+.-++.+.+.... .. .-+-..++-|.++|++|+|||.+|+.+.+... ..| +-++.+ .
T Consensus 229 dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~--~~~---~~l~~~------~--- 294 (489)
T CHL00195 229 DIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQ--LPL---LRLDVG------K--- 294 (489)
T ss_pred HhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC--CCE---EEEEhH------H---
Confidence 466766655555442211 00 00123456789999999999999999987421 111 112211 1
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC--------hhh----HHhhcCCCCCCCCCcEEEEec
Q 039283 261 SILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN--------YNS----WRALSCPFGAGASGSKIVVTH 328 (600)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~--------~~~----~~~l~~~l~~~~~gs~IlvTt 328 (600)
+.... .......+.+.+...-...+++|++|+++... ... ...+...+.....+..||.||
T Consensus 295 -l~~~~------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTT 367 (489)
T CHL00195 295 -LFGGI------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATA 367 (489)
T ss_pred -hcccc------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 11111 11122233333333334579999999995310 000 111222222233445566677
Q ss_pred cChHH-Hhhc---C-ccceeecCCCCHHHHHHHHHHhhcC
Q 039283 329 RNQGV-AETM---R-AVSTKTLKELSDDDCLRVLIQHSLG 363 (600)
Q Consensus 329 R~~~v-~~~~---~-~~~~~~l~~L~~~ea~~Lf~~~a~~ 363 (600)
..... ...+ + -...+.++.-+.++-.++|..+...
T Consensus 368 N~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 368 NNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred CChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 65432 1111 1 2356788888889999999877643
No 178
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.97 E-value=0.002 Score=64.94 Aligned_cols=85 Identities=22% Similarity=0.178 Sum_probs=55.4
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCC----CCcccHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQC----TDKDDLNLLQEKL 284 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~----~~~~~~~~l~~~l 284 (600)
+.-+++-|+|++|+||||||.+++... ...-..++|++....+++. .++.++.... ..+.+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~--~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA--QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 455789999999999999998877632 3344567899887776653 2333332110 0233455566666
Q ss_pred HHHhC-CCcEEEEEecC
Q 039283 285 KKQLS-GKKFLLVLDDV 300 (600)
Q Consensus 285 ~~~L~-~k~~LlVlDdv 300 (600)
...++ +..-+||+|.+
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55554 45669999997
No 179
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.96 E-value=0.006 Score=58.62 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=31.9
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD 254 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 254 (600)
..-.++.|+|.+|+|||++|.+++... ...-..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~--~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVET--AGQGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEECCCCCH
Confidence 345789999999999999998887632 22334567887655543
No 180
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.019 Score=61.13 Aligned_cols=98 Identities=17% Similarity=0.262 Sum_probs=65.3
Q ss_pred CccccccchHHHHHHHHhcCCC------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..+=|.++.+.+|.+++..-.. .+-..++=|.+||++|+|||.||+.+.+... +-++.++.+
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~-------vPf~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG-------VPFLSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-------CceEeecch-----
Confidence 4567888888888887754211 1224567789999999999999999987432 223444432
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCC
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN 302 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~ 302 (600)
+|+..+ ...+.+.+.+.+.+....-++++++|+++-
T Consensus 258 ---eivSGv------SGESEkkiRelF~~A~~~aPcivFiDeIDA 293 (802)
T KOG0733|consen 258 ---EIVSGV------SGESEKKIRELFDQAKSNAPCIVFIDEIDA 293 (802)
T ss_pred ---hhhccc------CcccHHHHHHHHHHHhccCCeEEEeecccc
Confidence 223322 334555666666777778999999999953
No 181
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.95 E-value=0.0065 Score=69.44 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=93.0
Q ss_pred CccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
+.+.|.+..+++|.+++...-. -+-...+.+.|+|++|+|||+||+.+++.. ... ++.++..
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~--~~~-----~i~i~~~---- 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA--GAY-----FISINGP---- 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh--CCe-----EEEEecH----
Confidence 3478999999999887742210 011234678899999999999999998732 222 2222211
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hhhHHhhcCCCCCC-CCCcEE
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------YNSWRALSCPFGAG-ASGSKI 324 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~-~~gs~I 324 (600)
++ .... .......+...+.......+.+|+||++.... ......+...+... ..+..+
T Consensus 247 ~i----~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 EI----MSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred HH----hccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 1110 11122233344444445678899999984321 01122233333221 123334
Q ss_pred EE-eccChH-HHhhcC----ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 325 VV-THRNQG-VAETMR----AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 325 lv-TtR~~~-v~~~~~----~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
++ ||.... +...+. -...+.+...+.++-.+++....-.... ... .....+++.+.|.-
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-~~d----~~l~~la~~t~G~~ 381 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-AED----VDLDKLAEVTHGFV 381 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-ccc----cCHHHHHHhCCCCC
Confidence 44 444332 111111 1246778888888888888755422111 111 12456777777764
No 182
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.94 E-value=0.0023 Score=64.55 Aligned_cols=86 Identities=21% Similarity=0.167 Sum_probs=55.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCC----CCcccHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQC----TDKDDLNLLQEKL 284 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~----~~~~~~~~l~~~l 284 (600)
+.-+++.|+|++|+||||||.++.... ...-..++|++..+.++.. .++.++.... ..+...++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~--~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456799999999999999998877643 3334567799877766553 2344432210 0233455556666
Q ss_pred HHHhC-CCcEEEEEecCC
Q 039283 285 KKQLS-GKKFLLVLDDVW 301 (600)
Q Consensus 285 ~~~L~-~k~~LlVlDdv~ 301 (600)
...++ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55554 456799999983
No 183
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.0033 Score=61.64 Aligned_cols=79 Identities=11% Similarity=0.250 Sum_probs=53.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhh--hccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRV--QRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
-++|.++||+|.|||+|.+.+++...+ ...|....-+.+. -..++.+.+.+ .......+.+.+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsE-------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSE-------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhh-------hhhHHHHHHHHHHHHH
Confidence 378999999999999999999987533 3445555555443 33444444432 3455667777888888
Q ss_pred CCCcE--EEEEecC
Q 039283 289 SGKKF--LLVLDDV 300 (600)
Q Consensus 289 ~~k~~--LlVlDdv 300 (600)
+++.. .+.+|.|
T Consensus 246 ~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEV 259 (423)
T ss_pred hCCCcEEEEEeHHH
Confidence 77654 4457888
No 184
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.93 E-value=0.0074 Score=61.93 Aligned_cols=89 Identities=12% Similarity=0.102 Sum_probs=48.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD--VFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ 287 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~ 287 (600)
..++|+|+|++|+||||++..++.... ...+ .+..++.. .+. ..+-+....+.++.+.. ...+...+.+.+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~-~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFH-GKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHH-HcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHH
Confidence 457999999999999999988876432 2222 23344432 232 22333344344443321 223455555555444
Q ss_pred hCC-CcEEEEEecCCC
Q 039283 288 LSG-KKFLLVLDDVWN 302 (600)
Q Consensus 288 L~~-k~~LlVlDdv~~ 302 (600)
-.. +.=+|++|-.-.
T Consensus 316 k~~~~~DvVLIDTaGR 331 (436)
T PRK11889 316 KEEARVDYILIDTAGK 331 (436)
T ss_pred HhccCCCEEEEeCccc
Confidence 322 234778888743
No 185
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.92 E-value=0.0094 Score=68.14 Aligned_cols=179 Identities=15% Similarity=0.148 Sum_probs=94.4
Q ss_pred CccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..+.|.+..++.|.+.+.-+-. .+-...+-+.++|++|+|||+||+.+.+.. ...| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~--~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES--GANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc--CCCE-----EEEehH----
Confidence 3467888887777776532110 011234568899999999999999998732 2222 222211
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC--------h----hhHHhhcCCCCC--CCCCc
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN--------Y----NSWRALSCPFGA--GASGS 322 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~--------~----~~~~~l~~~l~~--~~~gs 322 (600)
+++... .......+...+...-...+.+|+||+++... . .....++..+.. ...+.
T Consensus 522 ----~l~~~~------vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKW------VGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhcc------cCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 111111 11122233333444445678999999984310 0 011223333321 12345
Q ss_pred EEEEeccChHHHhh-c----CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 323 KIVVTHRNQGVAET-M----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 323 ~IlvTtR~~~v~~~-~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
.||.||........ + .-...+.+...+.++-.++|..+..... .....+ ...+++.|.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~-~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMP-LAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCC-CCccCC----HHHHHHHcCCCC
Confidence 56667755433221 1 1235678888898888888876543221 111112 345666777654
No 186
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.011 Score=62.94 Aligned_cols=156 Identities=16% Similarity=0.228 Sum_probs=89.0
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
.+.=|.++|++|+|||-||++|+|. ....| +++-.+ +++...- ..+.....+.+.+.-.
T Consensus 544 ~PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP--------ELlNkYV------GESErAVR~vFqRAR~ 602 (802)
T KOG0733|consen 544 APSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP--------ELLNKYV------GESERAVRQVFQRARA 602 (802)
T ss_pred CCCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH--------HHHHHHh------hhHHHHHHHHHHHhhc
Confidence 3556889999999999999999983 33333 555443 2222221 2223334444455556
Q ss_pred CCcEEEEEecCCCCC-----h------hhHHhhcCCCCCC--CCCcEEEEeccChHHHhh-c-C---ccceeecCCCCHH
Q 039283 290 GKKFLLVLDDVWNEN-----Y------NSWRALSCPFGAG--ASGSKIVVTHRNQGVAET-M-R---AVSTKTLKELSDD 351 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~-----~------~~~~~l~~~l~~~--~~gs~IlvTtR~~~v~~~-~-~---~~~~~~l~~L~~~ 351 (600)
.-+|+|.||.++... . ....+++.-+... ..|.-||-.|..+++... + . -...+.+..-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 789999999994321 0 1123344444322 356667766655443322 1 1 1256677888888
Q ss_pred HHHHHHHHhhcCCCCC-CCChhHHHHHHHHHHhhcCch
Q 039283 352 DCLRVLIQHSLGARDF-NIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 352 ea~~Lf~~~a~~~~~~-~~~~~l~~~~~~I~~~~~GlP 388 (600)
|-..+++...-....+ ..+-++.++++. .+|.|.-
T Consensus 683 eR~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gft 718 (802)
T KOG0733|consen 683 ERVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGFT 718 (802)
T ss_pred HHHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCCc
Confidence 9999998877532221 233455565543 3555654
No 187
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.91 E-value=0.0083 Score=57.71 Aligned_cols=209 Identities=16% Similarity=0.177 Sum_probs=116.7
Q ss_pred cccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhh----hhhccCCceEEEEeCCC---------
Q 039283 186 VYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDD----RVQRHFQIKAWTCVSED--------- 252 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~----~~~~~F~~~~wv~vs~~--------- 252 (600)
+.++++....|..... .+..+.+.++|++|.||-|.+..+.+.. -.+-.-+..-|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5667666666666553 2457899999999999998775555431 11112233445443322
Q ss_pred -C-----------CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcE-EEEEecCCCCChhhHHhhcCCCCCCC
Q 039283 253 -F-----------DVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKF-LLVLDDVWNENYNSWRALSCPFGAGA 319 (600)
Q Consensus 253 -~-----------~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 319 (600)
+ .-+-+.++++.+...... . +.-..++| ++|+-.++....+....++.....-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q-----i--------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ-----I--------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc-----h--------hhccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 112334444444432211 0 00012344 56666665555455555555554445
Q ss_pred CCcEEEEeccCh--HHHhhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhh
Q 039283 320 SGSKIVVTHRNQ--GVAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGL 397 (600)
Q Consensus 320 ~gs~IlvTtR~~--~v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~ 397 (600)
..+|+|+...+- -+...-...-.+.+...+++|....+++..-..+- ..+ .+++.+|+++++|+---...+...
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l-~lp---~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGL-QLP---KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcc-cCc---HHHHHHHHHHhcccHHHHHHHHHH
Confidence 677877754432 11111123356889999999999999877644322 222 488999999999986544444444
Q ss_pred hcCC--C--------ChhHHHHHHHhcccc
Q 039283 398 LRGK--D--------DLNDWEIVLNANIWD 417 (600)
Q Consensus 398 L~~~--~--------~~~~w~~~l~~~~~~ 417 (600)
++.+ + ..-+|+....+....
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~ 261 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIARV 261 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHHH
Confidence 3322 1 245788877664433
No 188
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.91 E-value=0.0061 Score=57.32 Aligned_cols=89 Identities=18% Similarity=0.154 Sum_probs=51.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhhcCCCC--Cc-ccHHHHHHHHHH
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE-DFDVFTVSKSILNSIASDQCT--DK-DDLNLLQEKLKK 286 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~il~~l~~~~~~--~~-~~~~~l~~~l~~ 286 (600)
++++.++|+.|+||||.+..++.....+ -..+..++... .....+-++...+.++.+... .. ...+.+.+.+..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~ 78 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEK 78 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHH
Confidence 4689999999999999887777654433 33445666532 234566777778887754210 12 223333344444
Q ss_pred HhCCCcEEEEEecCC
Q 039283 287 QLSGKKFLLVLDDVW 301 (600)
Q Consensus 287 ~L~~k~~LlVlDdv~ 301 (600)
.-..+.=++++|-.-
T Consensus 79 ~~~~~~D~vlIDT~G 93 (196)
T PF00448_consen 79 FRKKGYDLVLIDTAG 93 (196)
T ss_dssp HHHTTSSEEEEEE-S
T ss_pred HhhcCCCEEEEecCC
Confidence 322333477788764
No 189
>PHA00729 NTP-binding motif containing protein
Probab=96.90 E-value=0.0033 Score=59.75 Aligned_cols=25 Identities=48% Similarity=0.594 Sum_probs=21.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+...+.|+|.+|+||||||..+.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999998873
No 190
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.0022 Score=71.20 Aligned_cols=155 Identities=19% Similarity=0.209 Sum_probs=84.2
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCC-----ceEEEEeCCCCCHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ-----IKAWTCVSEDFDVFTV 258 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~-----~~~wv~vs~~~~~~~~ 258 (600)
++++||++|++++++.|..... ++ -.++|.+|||||+++.-++... +.+.-+ ..++ ++
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K---NN---PvLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~-sL--------- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK---NN---PVLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIY-SL--------- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC---CC---CeEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEE-Ee---------
Confidence 3589999999999999976542 22 2578999999999987776532 111111 1111 10
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC--------hhhHHhhcCCCCCCCCCcEEEEeccC
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN--------YNSWRALSCPFGAGASGSKIVVTHRN 330 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~IlvTtR~ 330 (600)
++..-+.+... ...-.+.+...+.+.-+.++.+|++|.++..- ..+-..++.|....+.--.|-.||-+
T Consensus 233 --D~g~LvAGaky-RGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IGATT~~ 309 (786)
T COG0542 233 --DLGSLVAGAKY-RGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIGATTLD 309 (786)
T ss_pred --cHHHHhccccc-cCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEEeccHH
Confidence 11111222211 22223333444444444568999999996420 01122233332222222234455543
Q ss_pred hHHHhh-------cCccceeecCCCCHHHHHHHHHH
Q 039283 331 QGVAET-------MRAVSTKTLKELSDDDCLRVLIQ 359 (600)
Q Consensus 331 ~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~ 359 (600)
+ .-.. ...++.+.+...+.+++..++.-
T Consensus 310 E-YRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrG 344 (786)
T COG0542 310 E-YRKYIEKDAALERRFQKVLVDEPSVEDTIAILRG 344 (786)
T ss_pred H-HHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHH
Confidence 3 2211 12567889999999999988864
No 191
>PRK09354 recA recombinase A; Provisional
Probab=96.88 E-value=0.0031 Score=64.15 Aligned_cols=86 Identities=23% Similarity=0.172 Sum_probs=56.8
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCC----CCcccHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQC----TDKDDLNLLQEKL 284 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~----~~~~~~~~l~~~l 284 (600)
+.-+++-|+|++|+||||||.+++... ...-..++|++....++.. .++.++.... ..+...++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~--~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA--QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 456789999999999999998877633 3344667899988877753 3344432210 0233455556666
Q ss_pred HHHhC-CCcEEEEEecCC
Q 039283 285 KKQLS-GKKFLLVLDDVW 301 (600)
Q Consensus 285 ~~~L~-~k~~LlVlDdv~ 301 (600)
...++ +..-+||+|.+-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55554 456699999983
No 192
>PRK07261 topology modulation protein; Provisional
Probab=96.87 E-value=0.003 Score=58.17 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=39.5
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhh-ccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQ-RHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~-~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
.|+|+|++|+||||||+.+....... -+.+...|-.. . ...+.++....+.+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~---------------------~-~~~~~~~~~~~~~~~~~~~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN---------------------W-QERDDDDMIADISNFLLKH 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc---------------------c-ccCCHHHHHHHHHHHHhCC
Confidence 48999999999999999987532211 12333334111 0 1223445566666667666
Q ss_pred cEEEEEecCC
Q 039283 292 KFLLVLDDVW 301 (600)
Q Consensus 292 ~~LlVlDdv~ 301 (600)
+ .|+|+..
T Consensus 60 ~--wIidg~~ 67 (171)
T PRK07261 60 D--WIIDGNY 67 (171)
T ss_pred C--EEEcCcc
Confidence 6 5778874
No 193
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.87 E-value=0.0029 Score=58.61 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=27.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEE
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWT 247 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv 247 (600)
...+|.|+|++|+||||+|+.++.. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~--l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER--LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH--HHHcCCcEEEE
Confidence 4569999999999999999999874 33445555555
No 194
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.85 E-value=0.0016 Score=66.19 Aligned_cols=102 Identities=16% Similarity=0.163 Sum_probs=53.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
..+.++|++|+|||.||..+++... ..-..++++++ .+++..+...-. . ...+.... + +.+. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~--~~g~~V~y~t~------~~l~~~l~~~~~-~---~~~~~~~~---~-~~l~-~ 246 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELL--DRGKSVIYRTA------DELIEILREIRF-N---NDKELEEV---Y-DLLI-N 246 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEEH------HHHHHHHHHHHh-c---cchhHHHH---H-HHhc-c
Confidence 5799999999999999999988532 22234556553 233333322111 1 11111111 2 2222 2
Q ss_pred cEEEEEecCCCCChhhHH--hhcCCCCCC-CCCcEEEEeccC
Q 039283 292 KFLLVLDDVWNENYNSWR--ALSCPFGAG-ASGSKIVVTHRN 330 (600)
Q Consensus 292 ~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~IlvTtR~ 330 (600)
-=||||||+.......|. .+...+... ..+..+||||..
T Consensus 247 ~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 247 CDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 248999999654333332 233222221 124458888864
No 195
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.85 E-value=0.0019 Score=59.18 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=65.4
Q ss_pred cccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHH
Q 039283 186 VYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNS 265 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~ 265 (600)
++|.+..+.++.+.+..-. ....-|.|+|..|+||+.+|+.+++.-. ..-...+-|+++.- +...+ -..
T Consensus 1 liG~s~~m~~~~~~~~~~a----~~~~pVlI~GE~GtGK~~lA~~IH~~s~--r~~~pfi~vnc~~~-~~~~~----e~~ 69 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAA----SSDLPVLITGETGTGKELLARAIHNNSP--RKNGPFISVNCAAL-PEELL----ESE 69 (168)
T ss_dssp SS--SHHHHHHHHHHHHHT----TSTS-EEEECSTTSSHHHHHHHHHHCST--TTTS-EEEEETTTS--HHHH----HHH
T ss_pred CEeCCHHHHHHHHHHHHHh----CCCCCEEEEcCCCCcHHHHHHHHHHhhh--cccCCeEEEehhhh-hcchh----hhh
Confidence 4788888888888776543 1225677999999999999999987321 11112233444422 22222 223
Q ss_pred hhcCCCCCcccH-HHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCC------C-----CCCcEEEEeccCh
Q 039283 266 IASDQCTDKDDL-NLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGA------G-----ASGSKIVVTHRNQ 331 (600)
Q Consensus 266 l~~~~~~~~~~~-~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~------~-----~~gs~IlvTtR~~ 331 (600)
|.+.......+. ....-.+.. -..=.|+||++..........+...+.. + ...+|||.||..+
T Consensus 70 LFG~~~~~~~~~~~~~~G~l~~---A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 70 LFGHEKGAFTGARSDKKGLLEQ---ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp HHEBCSSSSTTTSSEBEHHHHH---TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred hhccccccccccccccCCceee---ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 333221000000 000012222 2344789999987765554444433321 1 1367899888765
No 196
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.0061 Score=65.76 Aligned_cols=153 Identities=12% Similarity=0.016 Sum_probs=82.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHH----HHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQ----EKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~----~~l~ 285 (600)
....|.|.|+.|+|||+||+.+++... +...-.+..++++.-. ....+..+ ..+.
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~--------------------~~~~e~iQk~l~~vfs 488 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLD--------------------GSSLEKIQKFLNNVFS 488 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhcc--------------------chhHHHHHHHHHHHHH
Confidence 446789999999999999999998544 4444445566665421 11122222 3344
Q ss_pred HHhCCCcEEEEEecCCCC------ChhhHH-----------hhcCCCCCCCCCcEEEEeccChHHHh-hcC----cccee
Q 039283 286 KQLSGKKFLLVLDDVWNE------NYNSWR-----------ALSCPFGAGASGSKIVVTHRNQGVAE-TMR----AVSTK 343 (600)
Q Consensus 286 ~~L~~k~~LlVlDdv~~~------~~~~~~-----------~l~~~l~~~~~gs~IlvTtR~~~v~~-~~~----~~~~~ 343 (600)
+.+...+-+|||||++.. ....|. ++...+...++...+|.|.....-.. .+. -..+.
T Consensus 489 e~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~ 568 (952)
T KOG0735|consen 489 EALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVI 568 (952)
T ss_pred HHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEE
Confidence 555678999999998421 111221 11112222222234555554432111 111 12467
Q ss_pred ecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCc
Q 039283 344 TLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 387 (600)
Q Consensus 344 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~Gl 387 (600)
.|..+...+-.++++....... .....+...-+..+|+|.
T Consensus 569 ~L~ap~~~~R~~IL~~~~s~~~----~~~~~~dLd~ls~~TEGy 608 (952)
T KOG0735|consen 569 ALPAPAVTRRKEILTTIFSKNL----SDITMDDLDFLSVKTEGY 608 (952)
T ss_pred ecCCcchhHHHHHHHHHHHhhh----hhhhhHHHHHHHHhcCCc
Confidence 7888888888777765542211 111223334477788775
No 197
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.82 E-value=0.00092 Score=57.57 Aligned_cols=22 Identities=41% Similarity=0.582 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+|+|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 198
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.011 Score=63.66 Aligned_cols=158 Identities=14% Similarity=0.110 Sum_probs=82.6
Q ss_pred ccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
++=|-++-+.+|.+.+.-+-. -+-..++-|.++|++|+|||++|+.+.+. .+..| +.+..+
T Consensus 435 dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne--~~~nF-----lsvkgp----- 502 (693)
T KOG0730|consen 435 DIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANE--AGMNF-----LSVKGP----- 502 (693)
T ss_pred hccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhh--hcCCe-----eeccCH-----
Confidence 344466666666655432210 02246778999999999999999999873 33333 333322
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hhhHHhhcCCCCCCC--CCcEE
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------YNSWRALSCPFGAGA--SGSKI 324 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~~~~--~gs~I 324 (600)
+++.... ......+.+.+++.-+-.+++|.||.++.-. ......++..+.... ++.-|
T Consensus 503 ---EL~sk~v------GeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~V 573 (693)
T KOG0730|consen 503 ---ELFSKYV------GESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLV 573 (693)
T ss_pred ---HHHHHhc------CchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEE
Confidence 1222211 1223333334444434567888898884311 011223333333222 23333
Q ss_pred EEec-cChHHHhh-cC---ccceeecCCCCHHHHHHHHHHhhcC
Q 039283 325 VVTH-RNQGVAET-MR---AVSTKTLKELSDDDCLRVLIQHSLG 363 (600)
Q Consensus 325 lvTt-R~~~v~~~-~~---~~~~~~l~~L~~~ea~~Lf~~~a~~ 363 (600)
|-.| |...+-.. +. -...+.++.-+.+...++|+.++-.
T Consensus 574 iAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 574 IAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred EeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 3333 33322221 22 2356777777888888999888743
No 199
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.80 E-value=0.015 Score=58.06 Aligned_cols=186 Identities=16% Similarity=0.167 Sum_probs=99.4
Q ss_pred cccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHH
Q 039283 186 VYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTV 258 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 258 (600)
+=|-++++++|.+.+.-+-. -+-..++=|.++|++|.|||-||++|++. ....| +-+..
T Consensus 153 IGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~--T~AtF-----Irvvg------- 218 (406)
T COG1222 153 IGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ--TDATF-----IRVVG------- 218 (406)
T ss_pred ccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCceE-----EEecc-------
Confidence 45778888888887633210 12356778999999999999999999983 33333 32221
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhC-CCcEEEEEecCCCC-----------Chh---hHHhhcCCCCCC--CCC
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLS-GKKFLLVLDDVWNE-----------NYN---SWRALSCPFGAG--ASG 321 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~-~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~~~--~~g 321 (600)
.++.+..-+.. ..++..+.+.-+ ..+++|.+|.++.- +.+ ..-+++..+... ...
T Consensus 219 -SElVqKYiGEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~n 290 (406)
T COG1222 219 -SELVQKYIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGN 290 (406)
T ss_pred -HHHHHHHhccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCC
Confidence 12333322221 123333333333 57899999998421 111 122233333322 246
Q ss_pred cEEEEeccChHHHhh--cC---ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch----hHHH
Q 039283 322 SKIVVTHRNQGVAET--MR---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP----LAAK 392 (600)
Q Consensus 322 s~IlvTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP----Lai~ 392 (600)
.|||..|...++... +. -...++++.-+.+.-.++|.-++..- +....-++ +.|++.|.|.- -|+.
T Consensus 291 vKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM-~l~~dvd~----e~la~~~~g~sGAdlkaic 365 (406)
T COG1222 291 VKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKM-NLADDVDL----ELLARLTEGFSGADLKAIC 365 (406)
T ss_pred eEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhc-cCccCcCH----HHHHHhcCCCchHHHHHHH
Confidence 789988765544322 11 12567777555556666776554321 11122233 44556666654 3444
Q ss_pred HHHhhh
Q 039283 393 TLGGLL 398 (600)
Q Consensus 393 ~~~~~L 398 (600)
+=|+++
T Consensus 366 tEAGm~ 371 (406)
T COG1222 366 TEAGMF 371 (406)
T ss_pred HHHhHH
Confidence 444443
No 200
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=96.80 E-value=0.00094 Score=59.13 Aligned_cols=108 Identities=19% Similarity=0.171 Sum_probs=61.7
Q ss_pred ccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhh-hccCCceEEEEeCCCCCHHHHHHHHHHH
Q 039283 187 YGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRV-QRHFQIKAWTCVSEDFDVFTVSKSILNS 265 (600)
Q Consensus 187 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~-~~~F~~~~wv~vs~~~~~~~~l~~il~~ 265 (600)
||+...++++.+.+..-. ....-|.|+|..|+||+++|+.++..... ...|.. +++..
T Consensus 1 vG~S~~~~~l~~~l~~~a----~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~---~~~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLA----KSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIV---IDCAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHH----CSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCC---CCHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHh----CCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEE---echhh--------------
Confidence 577777777777775432 23356899999999999999988763221 111211 00000
Q ss_pred hhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC-CCCcEEEEeccCh
Q 039283 266 IASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG-ASGSKIVVTHRNQ 331 (600)
Q Consensus 266 l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IlvTtR~~ 331 (600)
.+ .+.+.. -+.-.|+|+|+...+......+...+... ....|+|.||..+
T Consensus 60 ---------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 60 ---------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp ---------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred ---------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 00 111111 14556889999877766666665555432 4678999999865
No 201
>PTZ00494 tuzin-like protein; Provisional
Probab=96.78 E-value=0.097 Score=54.14 Aligned_cols=168 Identities=12% Similarity=0.107 Sum_probs=101.0
Q ss_pred CCCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 181 VNEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 181 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
.....++.|++|-..+.+.|.+-+ ...++++.++|.-|+||++|.+...... --..++|++...- +-++
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE-----~~paV~VDVRg~E---DtLr 436 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVE-----GVALVHVDVGGTE---DTLR 436 (664)
T ss_pred cccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHc-----CCCeEEEEecCCc---chHH
Confidence 345679999999999999997664 3578999999999999999998765422 2345778887654 4578
Q ss_pred HHHHHhhcCCCCC-cccHHHHHHHHH---HHhCCCcEEEEEecCCCCC-hhhHHhhcCCCCCCCCCcEEEEeccChHHHh
Q 039283 261 SILNSIASDQCTD-KDDLNLLQEKLK---KQLSGKKFLLVLDDVWNEN-YNSWRALSCPFGAGASGSKIVVTHRNQGVAE 335 (600)
Q Consensus 261 ~il~~l~~~~~~~-~~~~~~l~~~l~---~~L~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~ 335 (600)
.+...++.+..+. .+-++-..+... ....++.-+||+-=-.-.+ ...+.+.. .|.....-|+|++---.+.+..
T Consensus 437 sVVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~ 515 (664)
T PTZ00494 437 SVVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTP 515 (664)
T ss_pred HHHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhch
Confidence 8888888764321 122222222222 2234666667763221111 11222221 2222334567776543332221
Q ss_pred h---cCccceeecCCCCHHHHHHHHHHh
Q 039283 336 T---MRAVSTKTLKELSDDDCLRVLIQH 360 (600)
Q Consensus 336 ~---~~~~~~~~l~~L~~~ea~~Lf~~~ 360 (600)
. +.....|.+++++..+|.++-.+.
T Consensus 516 ~n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 516 LNVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hhccCccceeEecCCcCHHHHHHHHhcc
Confidence 1 123367889999999999877654
No 202
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.76 E-value=0.0062 Score=62.19 Aligned_cols=91 Identities=16% Similarity=0.096 Sum_probs=55.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhh----ccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC--------Cccc
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ----RHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT--------DKDD 276 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~--------~~~~ 276 (600)
..-.+.-|+|++|+|||+|+.+++-..... ..-..++|++....|++.++.. +++.++..... ...+
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d~~~~l~~I~~~~~~~ 202 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMDADAVLDNIIYARAYT 202 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCChhhhcCeEEEecCCC
Confidence 345788899999999999998876432221 1124678999999998887654 45555433210 2233
Q ss_pred HHHHHHH---HHHHh-CCCcEEEEEecC
Q 039283 277 LNLLQEK---LKKQL-SGKKFLLVLDDV 300 (600)
Q Consensus 277 ~~~l~~~---l~~~L-~~k~~LlVlDdv 300 (600)
.+.+... +...+ ..+--|||+|.+
T Consensus 203 ~e~~~~~l~~l~~~i~~~~~~LvVIDSi 230 (344)
T PLN03187 203 YEHQYNLLLGLAAKMAEEPFRLLIVDSV 230 (344)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 3333322 22233 234558888887
No 203
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.74 E-value=0.0066 Score=61.45 Aligned_cols=91 Identities=16% Similarity=0.149 Sum_probs=54.9
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhh----ccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC--------Cccc
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ----RHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT--------DKDD 276 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~--------~~~~ 276 (600)
..-.++-|+|++|+|||+|+.+++-..... ..=..++|++....|++.++.+ +++.++..... ...+
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~d~~~~l~~i~~~~~~~ 172 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGVDPDAVLDNILYARAYT 172 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCCChHHhcCcEEEecCCC
Confidence 345788899999999999998776432221 1123678999998888877654 45555432110 1123
Q ss_pred HHHHH---HHHHHHhC-CCcEEEEEecC
Q 039283 277 LNLLQ---EKLKKQLS-GKKFLLVLDDV 300 (600)
Q Consensus 277 ~~~l~---~~l~~~L~-~k~~LlVlDdv 300 (600)
.+... ..+...+. ++.-|||+|.+
T Consensus 173 ~e~~~~~l~~l~~~i~~~~~~LvVIDSi 200 (313)
T TIGR02238 173 SEHQMELLDYLAAKFSEEPFRLLIVDSI 200 (313)
T ss_pred HHHHHHHHHHHHHHhhccCCCEEEEEcc
Confidence 33333 22333332 34558888887
No 204
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.73 E-value=0.0049 Score=66.75 Aligned_cols=83 Identities=20% Similarity=0.273 Sum_probs=56.5
Q ss_pred CCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 039283 208 DDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ 287 (600)
Q Consensus 208 ~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~ 287 (600)
.+.-+++.++|++|.||||||+.++.+. -| .++=|++|+.-+...+-..|...+.....
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa----GY-sVvEINASDeRt~~~v~~kI~~avq~~s~---------------- 381 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA----GY-SVVEINASDERTAPMVKEKIENAVQNHSV---------------- 381 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc----Cc-eEEEecccccccHHHHHHHHHHHHhhccc----------------
Confidence 3556899999999999999998887531 22 35567788777776666666655543321
Q ss_pred h--CCCcEEEEEecCCCCChhhHHhh
Q 039283 288 L--SGKKFLLVLDDVWNENYNSWRAL 311 (600)
Q Consensus 288 L--~~k~~LlVlDdv~~~~~~~~~~l 311 (600)
+ .+++..||+|.++.......+.+
T Consensus 382 l~adsrP~CLViDEIDGa~~~~Vdvi 407 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGAPRAAVDVI 407 (877)
T ss_pred cccCCCcceEEEecccCCcHHHHHHH
Confidence 2 25888999999976543334443
No 205
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.73 E-value=0.0066 Score=54.60 Aligned_cols=117 Identities=17% Similarity=0.117 Sum_probs=60.3
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC---CCHHHHHHHHHHHhh-----cCC----CCCccc---
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED---FDVFTVSKSILNSIA-----SDQ----CTDKDD--- 276 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~l~~il~~l~-----~~~----~~~~~~--- 276 (600)
..|-|++..|.||||+|-...- +...+-..+.++..-+. ......+..+ ..+. ... .....+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4788888899999999965543 33333333444443222 2333333332 0010 000 000011
Q ss_pred HHHHHHHHHHHhCC-CcEEEEEecCCC---CChhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 277 LNLLQEKLKKQLSG-KKFLLVLDDVWN---ENYNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 277 ~~~l~~~l~~~L~~-k~~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
.....+..++.+.. +-=|||||++-. ...-..+++...+.....+.-+|+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11223334444444 444999999832 12223445555555555678899999985
No 206
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.11 Score=52.12 Aligned_cols=157 Identities=12% Similarity=0.013 Sum_probs=90.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhh--------hhccCCceEEEEe-CCCCCHHHHHHHHHHHhhcCCCCCcccHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDR--------VQRHFQIKAWTCV-SEDFDVFTVSKSILNSIASDQCTDKDDLNLL 280 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~--------~~~~F~~~~wv~v-s~~~~~~~~l~~il~~l~~~~~~~~~~~~~l 280 (600)
-..+..++|..|.||+++|..+.+..- ...|-+...++.. +......++ +++.+.+....
T Consensus 17 l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~---------- 85 (299)
T PRK07132 17 ISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSS---------- 85 (299)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCC----------
Confidence 346777999999999999988876421 0111112223321 111111111 12222221110
Q ss_pred HHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH-hhcCccceeecCCCCHHHHHHHHH
Q 039283 281 QEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA-ETMRAVSTKTLKELSDDDCLRVLI 358 (600)
Q Consensus 281 ~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~Lf~ 358 (600)
.-.+.+=++|+|++...+......++..+....+++.+|++|.+. .+. +.......+++.+++.++..+.+.
T Consensus 86 ------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 86 ------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLL 159 (299)
T ss_pred ------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHH
Confidence 001467788999998877777788888887766778777766543 333 223456789999999999988776
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHH
Q 039283 359 QHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 393 (600)
Q Consensus 359 ~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~ 393 (600)
... .++ +.+..++...+|.--|+..
T Consensus 160 ~~~-------~~~---~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 160 SKN-------KEK---EYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred HcC-------CCh---hHHHHHHHHcCCHHHHHHH
Confidence 541 111 3355555566653345544
No 207
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=96.67 E-value=0.0073 Score=66.44 Aligned_cols=137 Identities=15% Similarity=0.094 Sum_probs=74.9
Q ss_pred CCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHH
Q 039283 182 NEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 182 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 261 (600)
....++|....++++.+.+.... .....|.|+|..|+|||++|+.+++... ..-...+.+++..-.. ..+..
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~lA~~ih~~s~--r~~~pfv~i~c~~~~~--~~~~~ 265 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVA----RSNSTVLLRGESGTGKELIAKAIHYLSP--RAKRPFVKVNCAALSE--TLLES 265 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCccHHHHHHHHHHhCC--CCCCCeEEeecCCCCH--HHHHH
Confidence 34579999999999988886442 2334678999999999999999986321 1111234455543321 22221
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEEEeccC
Q 039283 262 ILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIVVTHRN 330 (600)
Q Consensus 262 il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~ 330 (600)
.+.+........... ...........-.|+||++..........+...+..+. ...+||.||..
T Consensus 266 ---~lfg~~~~~~~~~~~--~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~ 340 (534)
T TIGR01817 266 ---ELFGHEKGAFTGAIA--QRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNR 340 (534)
T ss_pred ---HHcCCCCCccCCCCc--CCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCC
Confidence 222211100000000 00000001234568999998877666666665554321 13588887754
Q ss_pred h
Q 039283 331 Q 331 (600)
Q Consensus 331 ~ 331 (600)
.
T Consensus 341 ~ 341 (534)
T TIGR01817 341 D 341 (534)
T ss_pred C
Confidence 4
No 208
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.67 E-value=0.01 Score=60.16 Aligned_cols=58 Identities=16% Similarity=0.053 Sum_probs=39.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR----HFQIKAWTCVSEDFDVFTVSKSILNSIA 267 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~l~~il~~l~ 267 (600)
....++.|+|++|+|||+|+..++....... .-..++|++....++..++ ..+++.++
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~ 155 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYG 155 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcC
Confidence 3567999999999999999988865322211 1135689998887777753 44444443
No 209
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.66 E-value=0.01 Score=53.60 Aligned_cols=39 Identities=23% Similarity=0.250 Sum_probs=28.4
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF 253 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 253 (600)
++.|+|++|+|||+++..+.... ...-..++|++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~--~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI--ATKGGKVVYVDIEEEI 39 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH--HhcCCEEEEEECCcch
Confidence 36899999999999999987643 2233456677776554
No 210
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.65 E-value=0.0034 Score=63.52 Aligned_cols=26 Identities=31% Similarity=0.271 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+..+.|||++|+|||.+|+.+++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 56788999999999999999999984
No 211
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.64 E-value=0.01 Score=59.39 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=46.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD--VFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ 287 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~ 287 (600)
..++++|+|++|+||||++..+.........-..+..++.. .+. ..+.+....+.++.+.. ...+...+...+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D-~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTD-TYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECC-ccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc
Confidence 45799999999999999998887644332111234445543 221 22333333444443322 233444454444443
Q ss_pred hCCCcEEEEEecC
Q 039283 288 LSGKKFLLVLDDV 300 (600)
Q Consensus 288 L~~k~~LlVlDdv 300 (600)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 347777753
No 212
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=96.62 E-value=0.0093 Score=67.29 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=72.7
Q ss_pred ccccccchHHHHHHHHhcCCCCCCC--CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADD--GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~--~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 262 (600)
.++|.++.+..|.+.+.....+... +.....+.|+.|+|||-||+++... +-+..+..+-++.+.- .. +
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~--~Fgse~~~IriDmse~------~e-v 633 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY--VFGSEENFIRLDMSEF------QE-V 633 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH--HcCCccceEEechhhh------hh-h
Confidence 4678888888888888654432222 4667788999999999999988762 2233344555554432 11 2
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCcE-EEEEecCCCCChhhHHhhcCCCCC
Q 039283 263 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKF-LLVLDDVWNENYNSWRALSCPFGA 317 (600)
Q Consensus 263 l~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~ 317 (600)
...++.+...... +....|.+.++.++| +|+||||...++.....+...+..
T Consensus 634 skligsp~gyvG~---e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 634 SKLIGSPPGYVGK---EEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhccCCCcccccc---hhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 2222332211111 122356666777776 777899988777666655554443
No 213
>PRK06696 uridine kinase; Validated
Probab=96.61 E-value=0.0025 Score=61.49 Aligned_cols=44 Identities=25% Similarity=0.296 Sum_probs=35.4
Q ss_pred cccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 188 GREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 188 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.|.+-+++|.+.+.... .+...+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 36667788888886542 356789999999999999999999874
No 214
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.61 E-value=0.0083 Score=58.91 Aligned_cols=82 Identities=23% Similarity=0.237 Sum_probs=48.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
...-+.++|++|+|||.||.++.+... + .--.+.+++ ..+++..+....... . ....|.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~-~g~sv~f~~------~~el~~~Lk~~~~~~-----~----~~~~l~~~l~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K-AGISVLFIT------APDLLSKLKAAFDEG-----R----LEEKLLRELK 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H-cCCeEEEEE------HHHHHHHHHHHHhcC-----c----hHHHHHHHhh
Confidence 345799999999999999999988543 2 222344544 445566665554421 1 1122222221
Q ss_pred CCcEEEEEecCCCCChhhHH
Q 039283 290 GKKFLLVLDDVWNENYNSWR 309 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~ 309 (600)
+-=||||||+-......|.
T Consensus 167 -~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 -KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred -cCCEEEEecccCccCCHHH
Confidence 2348999999654444443
No 215
>PRK13695 putative NTPase; Provisional
Probab=96.59 E-value=0.0036 Score=57.87 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
.++|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999987653
No 216
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.57 E-value=0.009 Score=61.11 Aligned_cols=132 Identities=14% Similarity=0.033 Sum_probs=68.6
Q ss_pred cccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHH
Q 039283 186 VYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNS 265 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~ 265 (600)
++|....++++.+.+..-. ....-|.|+|..|+||+++|+.+.....- .-...+-|+++... .+.+.. .
T Consensus 1 liG~S~~m~~~~~~~~~~a----~~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~--~~~l~~---~ 69 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLA----PLDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALS--ENLLDS---E 69 (329)
T ss_pred CCcCCHHHHHHHHHHHHHh----CCCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCC--hHHHHH---H
Confidence 4677777887777775443 23356899999999999999988753211 11122344444322 122222 1
Q ss_pred hhcCCCCCcccHHH-HHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC-----------CCCcEEEEeccCh
Q 039283 266 IASDQCTDKDDLNL-LQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG-----------ASGSKIVVTHRNQ 331 (600)
Q Consensus 266 l~~~~~~~~~~~~~-l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTtR~~ 331 (600)
+.+........... ....+. ....-.|+||++..........+...+..+ ....+||.||...
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~---~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~ 144 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFE---RADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNAD 144 (329)
T ss_pred HhccccccccCcccccCCchh---hCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhh
Confidence 21211100000000 000011 123456899999877666555555544322 1345888887543
No 217
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.56 E-value=0.015 Score=56.64 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=55.1
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCC-----------------
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQC----------------- 271 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~----------------- 271 (600)
+.-.++.|+|.+|+|||+|+.++.... ...-..++|++..+. +.++++.+ .+++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~--~~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA--LKQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH--HhCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 456799999999999999999886532 123456778888654 44554443 22221100
Q ss_pred --CCcccHHHHHHHHHHHhCC-CcEEEEEecCC
Q 039283 272 --TDKDDLNLLQEKLKKQLSG-KKFLLVLDDVW 301 (600)
Q Consensus 272 --~~~~~~~~l~~~l~~~L~~-k~~LlVlDdv~ 301 (600)
....+.+.+...+.+.+.. ++-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0122345666666666654 56689999974
No 218
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.56 E-value=0.084 Score=53.25 Aligned_cols=69 Identities=13% Similarity=0.139 Sum_probs=41.5
Q ss_pred CccCCCCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 177 TTSLVNEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 177 ~~~~~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..|..++. ++=.......+..++... +.|.|.|++|+||||+|+.+... .... .+.|++....+..
T Consensus 39 ~~p~~d~~-y~f~~~~~~~vl~~l~~~--------~~ilL~G~pGtGKTtla~~lA~~--l~~~---~~rV~~~~~l~~~ 104 (327)
T TIGR01650 39 HVPDIDPA-YLFDKATTKAICAGFAYD--------RRVMVQGYHGTGKSTHIEQIAAR--LNWP---CVRVNLDSHVSRI 104 (327)
T ss_pred CCCCCCCC-ccCCHHHHHHHHHHHhcC--------CcEEEEeCCCChHHHHHHHHHHH--HCCC---eEEEEecCCCChh
Confidence 33334443 333334456677776432 46999999999999999999863 2222 2355665555544
Q ss_pred HHH
Q 039283 257 TVS 259 (600)
Q Consensus 257 ~~l 259 (600)
+++
T Consensus 105 Dli 107 (327)
T TIGR01650 105 DLV 107 (327)
T ss_pred hcC
Confidence 443
No 219
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.55 E-value=0.0033 Score=59.32 Aligned_cols=106 Identities=16% Similarity=0.171 Sum_probs=53.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh---
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL--- 288 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L--- 288 (600)
+++.|.|++|+|||+++..+........ ..++++..+ . .....+.+..+. ...............-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT-~----~Aa~~L~~~~~~----~a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPT-N----KAAKELREKTGI----EAQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESS-H----HHHHHHHHHHTS-----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCc-H----HHHHHHHHhhCc----chhhHHHHHhcCCcccccc
Confidence 6899999999999999988876443321 222333221 1 122223333221 1112111111000000
Q ss_pred ---CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccC
Q 039283 289 ---SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRN 330 (600)
Q Consensus 289 ---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~ 330 (600)
..+.-+||+|++.-.+...+..+...... .|+++|+.--.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 12345999999977666677777666554 46777766543
No 220
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.55 E-value=0.0021 Score=59.06 Aligned_cols=41 Identities=29% Similarity=0.130 Sum_probs=28.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED 252 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 252 (600)
..++.+.|+.|+|||.||+.+...... ......+-++.+.-
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~-~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFV-GSERPLIRIDMSEY 43 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT--SSCCEEEEEEGGGH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhcc-CCccchHHHhhhcc
Confidence 468899999999999999999863221 23344555565543
No 221
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.54 E-value=0.018 Score=58.95 Aligned_cols=58 Identities=16% Similarity=0.067 Sum_probs=41.0
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR----HFQIKAWTCVSEDFDVFTVSKSILNSIA 267 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~l~~il~~l~ 267 (600)
....++-|+|++|+|||+|+..++-...... .-..++|++....|++.++ .++++.++
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~ 182 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFG 182 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcC
Confidence 3457888999999999999987764322111 1126889999999888776 45555554
No 222
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0037 Score=67.51 Aligned_cols=105 Identities=27% Similarity=0.347 Sum_probs=65.0
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 262 (600)
+..-+|.++-+++|.+++.-....++-+-++++.+||+|||||++|+.++.. ....| +-++++.-.|..++-
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A--LnRkF---fRfSvGG~tDvAeIk--- 481 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA--LNRKF---FRFSVGGMTDVAEIK--- 481 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH--hCCce---EEEeccccccHHhhc---
Confidence 4567899999999999986443334456689999999999999999999873 33333 234566555544331
Q ss_pred HHHhhcCCCC-CcccHHHHHHHHHHHhCCCcEEEEEecCC
Q 039283 263 LNSIASDQCT-DKDDLNLLQEKLKKQLSGKKFLLVLDDVW 301 (600)
Q Consensus 263 l~~l~~~~~~-~~~~~~~l~~~l~~~L~~k~~LlVlDdv~ 301 (600)
+.... ...-...+++.|+.. +-.+-|+.||.|+
T Consensus 482 -----GHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEvD 515 (906)
T KOG2004|consen 482 -----GHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEVD 515 (906)
T ss_pred -----ccceeeeccCChHHHHHHHhh-CCCCceEEeehhh
Confidence 11100 111122333333332 2345688888884
No 223
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.51 E-value=0.015 Score=59.38 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=40.0
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhcc----CCceEEEEeCCCCCHHHHHHHHHHHh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH----FQIKAWTCVSEDFDVFTVSKSILNSI 266 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~l~~il~~l 266 (600)
....++-|+|++|+|||+++.+++........ =..++|++....+++.++.+ +++.+
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~ 160 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEAL 160 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHc
Confidence 34578899999999999999888754322111 13688999988888776654 34444
No 224
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.50 E-value=0.017 Score=58.85 Aligned_cols=56 Identities=11% Similarity=0.103 Sum_probs=39.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQR----HFQIKAWTCVSEDFDVFTVSKSILNSI 266 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~l~~il~~l 266 (600)
...++-|+|++|+|||+++.+++....... .-..++||+....++..++. ++++.+
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHc
Confidence 457889999999999999988875432211 11268899998888877654 344443
No 225
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.017 Score=56.92 Aligned_cols=90 Identities=23% Similarity=0.163 Sum_probs=57.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH---HhhcCCCCCcccHHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN---SIASDQCTDKDDLNLLQEKLK 285 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~---~l~~~~~~~~~~~~~l~~~l~ 285 (600)
+.-+++=|+|+.|+||||+|.+++- ..+..-..++|++....+++..+..-... .+....+........+.+.+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~--~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVA--NAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHH--HhhcCCCeEEEEeCCCCCCHHHHHHHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 4567888999999999999988765 34444558899999999988765433322 122222212223333344444
Q ss_pred HHhCCCcEEEEEecC
Q 039283 286 KQLSGKKFLLVLDDV 300 (600)
Q Consensus 286 ~~L~~k~~LlVlDdv 300 (600)
.....+--|+|+|.+
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 444444669999998
No 226
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.45 E-value=0.047 Score=60.54 Aligned_cols=182 Identities=12% Similarity=0.133 Sum_probs=101.1
Q ss_pred ccccccc---hHHHHHHHHhcCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHH
Q 039283 185 EVYGREK---DKEAIVELLLRDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTV 258 (600)
Q Consensus 185 ~~vGR~~---e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 258 (600)
++.|-++ |+.++++.|.++.. .+..-++=+.|+|++|+|||-||++++-... +-|++++..
T Consensus 312 DVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS------ 378 (774)
T KOG0731|consen 312 DVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS------ 378 (774)
T ss_pred cccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH------
Confidence 4677765 55566666655431 1234467789999999999999999986322 234555532
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC---------------hhhHHhhcCCCCCCC--CC
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN---------------YNSWRALSCPFGAGA--SG 321 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~---------------~~~~~~l~~~l~~~~--~g 321 (600)
+.++.+.+. .... ..+.....-...+++|.+|++.... ...+++++..+.... .+
T Consensus 379 --EFvE~~~g~---~asr---vr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~ 450 (774)
T KOG0731|consen 379 --EFVEMFVGV---GASR---VRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKG 450 (774)
T ss_pred --HHHHHhccc---chHH---HHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCc
Confidence 223333222 1111 1222222224578899998874211 112333433333222 23
Q ss_pred cEEEEeccChHHHhh--cC---ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHH
Q 039283 322 SKIVVTHRNQGVAET--MR---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 391 (600)
Q Consensus 322 s~IlvTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai 391 (600)
..++-+|...++... +. -...+.++.-+...-.++|.-++-.-.. ..+..++.+ |+...-|++=|.
T Consensus 451 vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 451 VIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred EEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHHH
Confidence 344445554443321 11 2357888888888999999888744322 233445555 888888887554
No 227
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.42 E-value=0.0022 Score=68.53 Aligned_cols=50 Identities=26% Similarity=0.351 Sum_probs=39.8
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+++|.++.+++|++.|......-....+++.++||+|+|||+||+.+...
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 48999999999999993322112345579999999999999999999863
No 228
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.36 E-value=0.0062 Score=62.34 Aligned_cols=133 Identities=14% Similarity=0.037 Sum_probs=72.1
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.++|+...+.++.+.+.... ....-|.|+|..|+||+++|+.+..... ..-...+.+++.... . +.+..
T Consensus 7 ~liG~S~~~~~~~~~i~~~a----~~~~pVlI~GE~GtGK~~lA~~iH~~s~--r~~~pfv~v~c~~~~-~-~~~~~--- 75 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLA----PLDKPVLIIGERGTGKELIASRLHYLSS--RWQGPFISLNCAALN-E-NLLDS--- 75 (326)
T ss_pred ccEECCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHhCC--ccCCCeEEEeCCCCC-H-HHHHH---
Confidence 58999999999988876543 2334688999999999999998875211 011123445555422 2 22222
Q ss_pred HhhcCCCCCccc-HHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEEEeccCh
Q 039283 265 SIASDQCTDKDD-LNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIVVTHRNQ 331 (600)
Q Consensus 265 ~l~~~~~~~~~~-~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~~ 331 (600)
.+.+........ .......+. ....-.|+|||+..........+...+..+. ...+||.||...
T Consensus 76 ~lfg~~~~~~~g~~~~~~g~l~---~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~ 151 (326)
T PRK11608 76 ELFGHEAGAFTGAQKRHPGRFE---RADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (326)
T ss_pred HHccccccccCCcccccCCchh---ccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchh
Confidence 111111000000 000001111 1233468899998777666666655443321 246888887654
No 229
>PRK08233 hypothetical protein; Provisional
Probab=96.34 E-value=0.012 Score=54.65 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+|+|.|++|+||||||+.+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999988763
No 230
>PHA02244 ATPase-like protein
Probab=96.33 E-value=0.017 Score=59.01 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-|.|+|++|+|||+||+.++..
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999999999999874
No 231
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.32 E-value=0.033 Score=53.01 Aligned_cols=60 Identities=10% Similarity=0.123 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCcEEEEEecCC-CCChhhHHhhcCCCCCC--CCCcEEEEeccChHHHhhcC
Q 039283 279 LLQEKLKKQLSGKKFLLVLDDVW-NENYNSWRALSCPFGAG--ASGSKIVVTHRNQGVAETMR 338 (600)
Q Consensus 279 ~l~~~l~~~L~~k~~LlVlDdv~-~~~~~~~~~l~~~l~~~--~~gs~IlvTtR~~~v~~~~~ 338 (600)
+..-.+.+.|-..|-+|+-|+-- +-|...=..+...+... ..|..||+.|.+..++..+.
T Consensus 148 qQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 148 QQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 33345667777788889999752 22222222333333222 24778999999999998654
No 232
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.31 E-value=0.0043 Score=54.83 Aligned_cols=32 Identities=31% Similarity=0.423 Sum_probs=24.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCc
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQI 243 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~ 243 (600)
.--|+|+|++|+|||||++.+.+..+... |..
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g-~kv 36 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKG-YKV 36 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcC-cee
Confidence 45689999999999999999987544332 543
No 233
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.31 E-value=0.017 Score=59.50 Aligned_cols=89 Identities=18% Similarity=0.098 Sum_probs=49.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE-DFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
..++.++|+.|+||||++..+............+..++... .....+-++...+.++.+.. ...+...+...+.+ +.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~~-l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALAE-LR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHHH-hc
Confidence 36899999999999999988886432221122344554322 12344555666666654432 22222233333333 34
Q ss_pred CCcEEEEEecCCC
Q 039283 290 GKKFLLVLDDVWN 302 (600)
Q Consensus 290 ~k~~LlVlDdv~~ 302 (600)
++ -+|++|..-.
T Consensus 215 ~~-DlVLIDTaG~ 226 (374)
T PRK14722 215 NK-HMVLIDTIGM 226 (374)
T ss_pred CC-CEEEEcCCCC
Confidence 44 4566998843
No 234
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.29 E-value=0.0075 Score=55.21 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=27.7
Q ss_pred EEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCH
Q 039283 214 VSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDV 255 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 255 (600)
+.|.|.+|+|||++|.++... .....+++.-...++.
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~ 38 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD 38 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH
Confidence 679999999999999888652 2345667766666654
No 235
>PTZ00035 Rad51 protein; Provisional
Probab=96.29 E-value=0.037 Score=56.68 Aligned_cols=91 Identities=14% Similarity=0.087 Sum_probs=52.7
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhh----ccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC--------Cccc
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ----RHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT--------DKDD 276 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~--------~~~~ 276 (600)
..-.++.|+|++|+|||+|+..++-..... ..-..++|++....+++.++ ..+++.++..... ...+
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~~~~~~l~nI~~~~~~~ 194 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGLDPEDVLDNIAYARAYN 194 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCCChHhHhhceEEEccCC
Confidence 356789999999999999998886432211 11234569998877777663 4445544332100 1223
Q ss_pred HHHHHHHH---HHHh-CCCcEEEEEecC
Q 039283 277 LNLLQEKL---KKQL-SGKKFLLVLDDV 300 (600)
Q Consensus 277 ~~~l~~~l---~~~L-~~k~~LlVlDdv 300 (600)
.+.+.+.+ ...+ .++.-|||+|.+
T Consensus 195 ~e~~~~~l~~~~~~l~~~~~~lvVIDSi 222 (337)
T PTZ00035 195 HEHQMQLLSQAAAKMAEERFALLIVDSA 222 (337)
T ss_pred HHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 33333333 2222 234558888887
No 236
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.28 E-value=0.01 Score=55.90 Aligned_cols=79 Identities=22% Similarity=0.264 Sum_probs=44.2
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcC-CCCCcccHHHHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASD-QCTDKDDLNLLQEKLKKQ 287 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~-~~~~~~~~~~l~~~l~~~ 287 (600)
..+.+|+|.|.+|+||||+|+.++.. ..... ..-++...-+...+ ........... ......+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~--~~~~~--~~~I~~D~YYk~~~-~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ--LGVEK--VVVISLDDYYKDQS-HLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH--hCcCc--ceEeeccccccchh-hcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 35679999999999999999999873 22221 11222111111000 00011111110 111567788888889998
Q ss_pred hCCCc
Q 039283 288 LSGKK 292 (600)
Q Consensus 288 L~~k~ 292 (600)
+.+++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 237
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=96.26 E-value=0.011 Score=67.11 Aligned_cols=134 Identities=14% Similarity=0.096 Sum_probs=73.5
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|+...+..+.+.+..-. ....-|.|+|..|+|||++|+.+++... ..-...+.+++.... ...+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a----~~~~pVLI~GE~GTGK~~lA~~ih~~s~--r~~~~~v~i~c~~~~--~~~~~~-- 445 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVA----QSDSTVLILGETGTGKELIARAIHNLSG--RNNRRMVKMNCAAMP--AGLLES-- 445 (686)
T ss_pred cceeecCHHHHHHHHHHHHHh----CCCCCEEEECCCCcCHHHHHHHHHHhcC--CCCCCeEEEecccCC--hhHhhh--
Confidence 358999999998877765432 2335789999999999999999976321 111233445554332 122222
Q ss_pred HHhhcCCCCCccc-HHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC-----------CCCcEEEEeccCh
Q 039283 264 NSIASDQCTDKDD-LNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG-----------ASGSKIVVTHRNQ 331 (600)
Q Consensus 264 ~~l~~~~~~~~~~-~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTtR~~ 331 (600)
.+.+........ .......+. ....-.|+|||+..........+...+..+ ..+.+||.||..+
T Consensus 446 -~lfg~~~~~~~g~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 446 -DLFGHERGAFTGASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRD 521 (686)
T ss_pred -hhcCcccccccccccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCC
Confidence 111111100000 000111121 123457999999877666666665544321 1356888888654
No 238
>PRK05439 pantothenate kinase; Provisional
Probab=96.25 E-value=0.03 Score=56.29 Aligned_cols=84 Identities=18% Similarity=0.076 Sum_probs=46.9
Q ss_pred CCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 039283 208 DDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ 287 (600)
Q Consensus 208 ~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~ 287 (600)
.+.+-+|+|.|.+|+||||+|+.+..-......-..+.-++...-+...+.+..- ..+.........+.+.+.+.|...
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhh-hccccCCCcccccHHHHHHHHHHH
Confidence 3567899999999999999998887522111011233344444333332222210 011111112456777888888877
Q ss_pred hCCCc
Q 039283 288 LSGKK 292 (600)
Q Consensus 288 L~~k~ 292 (600)
.+++.
T Consensus 162 k~G~~ 166 (311)
T PRK05439 162 KSGKP 166 (311)
T ss_pred HcCCC
Confidence 77765
No 239
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.25 E-value=0.017 Score=58.14 Aligned_cols=86 Identities=23% Similarity=0.147 Sum_probs=52.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKL 284 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l 284 (600)
+.-+++-|+|+.|+||||||..+... .+..-..++|++....+++ ..++.++..... .+...++..+..
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~--~q~~g~~~a~ID~e~~ld~-----~~a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAE--AQKQGGICAFIDAEHALDP-----EYAESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH--HHHTT-EEEEEESSS---H-----HHHHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHh--hhcccceeEEecCcccchh-----hHHHhcCccccceEEecCCcHHHHHHHH
Confidence 34579999999999999999887763 3334556889998887765 334444432211 233445556666
Q ss_pred HHHhCC-CcEEEEEecCC
Q 039283 285 KKQLSG-KKFLLVLDDVW 301 (600)
Q Consensus 285 ~~~L~~-k~~LlVlDdv~ 301 (600)
...++. ..-++|+|.|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 666654 44588999983
No 240
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.23 E-value=0.0085 Score=56.61 Aligned_cols=111 Identities=16% Similarity=0.191 Sum_probs=57.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
.++.|+|+.|+||||++..+.... .......++. +.++... ..... ..+-.... ...+.....+.++..+...
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~--~~~~~~~i~t-~e~~~E~--~~~~~-~~~i~q~~-vg~~~~~~~~~i~~aLr~~ 74 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYI--NKNKTHHILT-IEDPIEF--VHESK-RSLINQRE-VGLDTLSFENALKAALRQD 74 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh--hhcCCcEEEE-EcCCccc--cccCc-cceeeecc-cCCCccCHHHHHHHHhcCC
Confidence 478999999999999998876532 2223333332 2222110 00000 00000000 1112233455677777777
Q ss_pred cEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHH
Q 039283 292 KFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVA 334 (600)
Q Consensus 292 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~ 334 (600)
+=+|++|++.+ .+......... ..|..++.|+-..++.
T Consensus 75 pd~ii~gEird--~e~~~~~l~~a---~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 75 PDVILVGEMRD--LETIRLALTAA---ETGHLVMSTLHTNSAA 112 (198)
T ss_pred cCEEEEcCCCC--HHHHHHHHHHH---HcCCEEEEEecCCcHH
Confidence 88999999953 34444333322 2355577777655443
No 241
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.23 E-value=0.036 Score=58.46 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=21.8
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+.++.++|++|+||||+|..++..
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHH
Confidence 34689999999999999998777654
No 242
>PTZ00301 uridine kinase; Provisional
Probab=96.22 E-value=0.011 Score=56.15 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999998876
No 243
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.22 E-value=0.034 Score=51.60 Aligned_cols=119 Identities=16% Similarity=0.135 Sum_probs=62.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEE---eCCCCCHHHHH------HHHHHHhhcCC-----CCCcccH
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTC---VSEDFDVFTVS------KSILNSIASDQ-----CTDKDDL 277 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~---vs~~~~~~~~l------~~il~~l~~~~-----~~~~~~~ 277 (600)
.+++|.|+.|.|||||++.+.... ......+++. +. ..+..... .++++.++... ...-..-
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 589999999999999999987632 2234444442 21 11222211 11344443221 0011111
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCC-CChhhHHhhcCCCCCCC-C-CcEEEEeccChHHH
Q 039283 278 NLLQEKLKKQLSGKKFLLVLDDVWN-ENYNSWRALSCPFGAGA-S-GSKIVVTHRNQGVA 334 (600)
Q Consensus 278 ~~l~~~l~~~L~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~-~-gs~IlvTtR~~~v~ 334 (600)
+...-.+...+-..+-++++|+.-. .|......+...+.... . +..||++|.+....
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 2222335555666788999999742 33334444433333221 2 56788888876554
No 244
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.20 E-value=0.037 Score=50.55 Aligned_cols=126 Identities=17% Similarity=0.243 Sum_probs=69.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEe---C------------------CCC---------------
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCV---S------------------EDF--------------- 253 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~v---s------------------~~~--------------- 253 (600)
.-..+.|+|++|.|||||.+.+|...+. -...+|++- + +++
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e~p---t~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~p 103 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEERP---TRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALP 103 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhhcC---CCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhh
Confidence 3468999999999999999999974332 233444421 0 000
Q ss_pred ---------CHHHHHHHHHHHhhcCC-----CCCcccHHHHHHHHHHHhCCCcEEEEEecCC-CCCh-hhHHhhcCCCCC
Q 039283 254 ---------DVFTVSKSILNSIASDQ-----CTDKDDLNLLQEKLKKQLSGKKFLLVLDDVW-NENY-NSWRALSCPFGA 317 (600)
Q Consensus 254 ---------~~~~~l~~il~~l~~~~-----~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~-~~~~-~~~~~l~~~l~~ 317 (600)
.+.+-..+.++..+... +.+-..-++..-.+.+.+-+++-+|+=|.-- +-|+ ..|+-+.-.-.-
T Consensus 104 L~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeei 183 (223)
T COG2884 104 LRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI 183 (223)
T ss_pred hhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence 11222223333333221 1022222333445666677888899988752 2222 344433222122
Q ss_pred CCCCcEEEEeccChHHHhhcC
Q 039283 318 GASGSKIVVTHRNQGVAETMR 338 (600)
Q Consensus 318 ~~~gs~IlvTtR~~~v~~~~~ 338 (600)
+..|..||++|.+..+...+.
T Consensus 184 nr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 184 NRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred hhcCcEEEEEeccHHHHHhcc
Confidence 346899999999998777654
No 245
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.19 E-value=0.025 Score=52.14 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=59.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhh-hh--hc---cCC--ceEEEEeCCCCCHHHHHHHHHHHhhcCCC---C--CcccH
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDD-RV--QR---HFQ--IKAWTCVSEDFDVFTVSKSILNSIASDQC---T--DKDDL 277 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~-~~--~~---~F~--~~~wv~vs~~~~~~~~l~~il~~l~~~~~---~--~~~~~ 277 (600)
-.+++|+|+.|+|||||.+.+..+. .+ .. .|. ...|+ .+ .+.+..++.... . ..-+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 3589999999999999999885321 00 00 010 11222 11 345555553211 0 11111
Q ss_pred -HHHHHHHHHHhCCC--cEEEEEecCCC-CChhhHHhhcCCCCCC-CCCcEEEEeccChHHHh
Q 039283 278 -NLLQEKLKKQLSGK--KFLLVLDDVWN-ENYNSWRALSCPFGAG-ASGSKIVVTHRNQGVAE 335 (600)
Q Consensus 278 -~~l~~~l~~~L~~k--~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IlvTtR~~~v~~ 335 (600)
....-.+...+-.+ +=++++|+.-. .+......+...+... ..|..||++|.+.....
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 12222344455556 77888898732 2333333333333221 14667888888876654
No 246
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.18 E-value=0.049 Score=54.72 Aligned_cols=133 Identities=23% Similarity=0.316 Sum_probs=71.0
Q ss_pred cccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhh-hhhccCCceEE----EEeCCCC-----C-
Q 039283 186 VYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDD-RVQRHFQIKAW----TCVSEDF-----D- 254 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~-~~~~~F~~~~w----v~vs~~~-----~- 254 (600)
+-+|..+..--.++|+.+ .+..|.+.|.+|.|||.||-+..-.. ..+..|...+- +.+++.. +
T Consensus 226 i~prn~eQ~~ALdlLld~------dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~e 299 (436)
T COG1875 226 IRPRNAEQRVALDLLLDD------DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTE 299 (436)
T ss_pred cCcccHHHHHHHHHhcCC------CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCch
Confidence 345666667677777654 57899999999999999884432211 22334443321 2233221 1
Q ss_pred ------HHHHHHHHHHHhhcCCCCCcccHHHHHHHHH---------HHhCCC---cEEEEEecCCCCChhhHHhhcCCCC
Q 039283 255 ------VFTVSKSILNSIASDQCTDKDDLNLLQEKLK---------KQLSGK---KFLLVLDDVWNENYNSWRALSCPFG 316 (600)
Q Consensus 255 ------~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~---------~~L~~k---~~LlVlDdv~~~~~~~~~~l~~~l~ 316 (600)
...-..+-++.+..... .....+...+. .+.+|+ +-+||+|.+.+..+.+... .+.
T Consensus 300 EeKm~PWmq~i~DnLE~L~~~~~---~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikT---ilt 373 (436)
T COG1875 300 EEKMGPWMQAIFDNLEVLFSPNE---PGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKT---ILT 373 (436)
T ss_pred hhhccchHHHHHhHHHHHhcccc---cchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHH---HHH
Confidence 11112222233322221 11112222211 222343 4589999998776554444 445
Q ss_pred CCCCCcEEEEeccC
Q 039283 317 AGASGSKIVVTHRN 330 (600)
Q Consensus 317 ~~~~gs~IlvTtR~ 330 (600)
..+.||||+.|.-.
T Consensus 374 R~G~GsKIVl~gd~ 387 (436)
T COG1875 374 RAGEGSKIVLTGDP 387 (436)
T ss_pred hccCCCEEEEcCCH
Confidence 56789999998754
No 247
>PRK14974 cell division protein FtsY; Provisional
Probab=96.16 E-value=0.04 Score=56.22 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=48.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC--HHHHHHHHHHHhhcCCCC--CcccH-HHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD--VFTVSKSILNSIASDQCT--DKDDL-NLLQEKL 284 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~l~~il~~l~~~~~~--~~~~~-~~l~~~l 284 (600)
++.++.++|++|+||||++..++..... ..+ .++.+. .+.+. ..+-+......++.+... ...+. ....+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~-~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK-NGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH-cCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 4689999999999999988877764322 223 233333 23332 233455556666543211 11222 2223333
Q ss_pred HHHhCCCcEEEEEecCCCC
Q 039283 285 KKQLSGKKFLLVLDDVWNE 303 (600)
Q Consensus 285 ~~~L~~k~~LlVlDdv~~~ 303 (600)
........=++++|-....
T Consensus 216 ~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHhCCCCEEEEECCCcc
Confidence 3322222238999998543
No 248
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.16 E-value=0.016 Score=56.16 Aligned_cols=125 Identities=12% Similarity=0.052 Sum_probs=71.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC-----CCCHHHHHHHHHHHhhcCCCC-----CcccHHHH
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE-----DFDVFTVSKSILNSIASDQCT-----DKDDLNLL 280 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-----~~~~~~~l~~il~~l~~~~~~-----~~~~~~~l 280 (600)
-.+++|+|.+|+|||||++.+.. ....-...+++.-.+ .....+...++++.++..... ..-+-.+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~---L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILG---LEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHc---CcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 35899999999999999999975 333333444443221 112334556666666643211 11122223
Q ss_pred H-HHHHHHhCCCcEEEEEecCCCCC-hhhHHhhcCCCCC--CCCCcEEEEeccChHHHhhcC
Q 039283 281 Q-EKLKKQLSGKKFLLVLDDVWNEN-YNSWRALSCPFGA--GASGSKIVVTHRNQGVAETMR 338 (600)
Q Consensus 281 ~-~~l~~~L~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~IlvTtR~~~v~~~~~ 338 (600)
+ -.+.+.|.-++-+||.|..-+.- ...-.++...+.. ...|...+..|-+-.+...++
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 3 34567778899999999974432 1122223333222 124566777777777766654
No 249
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.15 E-value=0.023 Score=51.82 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=60.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceE---EEEeCCCCCHHHHHHHHHHHhh-----cC----CCCCccc--
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKA---WTCVSEDFDVFTVSKSILNSIA-----SD----QCTDKDD-- 276 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~---wv~vs~~~~~~~~l~~il~~l~-----~~----~~~~~~~-- 276 (600)
...|-|++..|.||||+|-.+.- +...+=-.+. |+.-.........+..+ .+. .. ......+
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~ 80 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTA 80 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHH
Confidence 36788888899999999966554 2222222222 33333222333343332 111 00 0001111
Q ss_pred -HHHHHHHHHHHhCCCcE-EEEEecCCC---CChhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 277 -LNLLQEKLKKQLSGKKF-LLVLDDVWN---ENYNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 277 -~~~l~~~l~~~L~~k~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
.....+..++.+...+| |||||.+-. ...-+.+++...+.....+..||+|-|+.
T Consensus 81 ~~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 81 IAKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 22233344555544444 999999821 11223345555555555678999999986
No 250
>PRK07667 uridine kinase; Provisional
Probab=96.12 E-value=0.0081 Score=56.51 Aligned_cols=38 Identities=18% Similarity=0.444 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
++.|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 456666664432 45589999999999999999998874
No 251
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=96.12 E-value=0.028 Score=55.25 Aligned_cols=88 Identities=17% Similarity=0.162 Sum_probs=51.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCC-ceEEEEeCCCCC-HHHHHHHHHHHhhcC-------CCCCcccHHH-
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ-IKAWTCVSEDFD-VFTVSKSILNSIASD-------QCTDKDDLNL- 279 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~l~~il~~l~~~-------~~~~~~~~~~- 279 (600)
.-+-++|.|.+|+|||+|++.+++.. ..+|. .++++-+++... ..++...+...-... .. +......
T Consensus 68 ~GQr~~If~~~G~GKTtLa~~i~~~i--~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~-d~~~~~r~ 144 (274)
T cd01133 68 KGGKIGLFGGAGVGKTVLIMELINNI--AKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQM-NEPPGARA 144 (274)
T ss_pred cCCEEEEecCCCCChhHHHHHHHHHH--HhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECC-CCCHHHHH
Confidence 44688999999999999999999853 33454 345566665543 445555554321110 00 1111111
Q ss_pred ----HHHHHHHHh---CCCcEEEEEecC
Q 039283 280 ----LQEKLKKQL---SGKKFLLVLDDV 300 (600)
Q Consensus 280 ----l~~~l~~~L---~~k~~LlVlDdv 300 (600)
..-.+.+++ +++.+||++||+
T Consensus 145 ~~~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 145 RVALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 112234444 389999999998
No 252
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=96.11 E-value=0.28 Score=48.95 Aligned_cols=69 Identities=14% Similarity=0.136 Sum_probs=49.1
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH-hhcCccceeecCCCCHHHHHHHHHH
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA-ETMRAVSTKTLKELSDDDCLRVLIQ 359 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~-~~~~~~~~~~l~~L~~~ea~~Lf~~ 359 (600)
+++=++|+||++..+....+.++..+....+++.+|++|.+. .+. +..+....+.+.+ +.++..+.+..
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~ 173 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ 173 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence 456689999999998889999998888776777777777654 232 2333456777766 66666666653
No 253
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.10 E-value=0.0059 Score=56.00 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=19.2
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
++.|.|.+|+|||++|..+..
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~ 23 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA 23 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999999999999988865
No 254
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.09 E-value=0.053 Score=52.78 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=35.2
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 262 (600)
+.-.++.|.|++|+|||++|.++.... ...-..++|++... ++.++.+.+
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~--~~~ge~~lyvs~ee--~~~~i~~~~ 68 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGIYVALEE--HPVQVRRNM 68 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH--HHcCCcEEEEEeeC--CHHHHHHHH
Confidence 456799999999999999998876532 13355678888765 345555543
No 255
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.09 E-value=0.034 Score=54.22 Aligned_cols=22 Identities=27% Similarity=0.469 Sum_probs=19.1
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+..|+|++|+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 5679999999999999888754
No 256
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.08 E-value=0.027 Score=54.09 Aligned_cols=76 Identities=16% Similarity=0.023 Sum_probs=40.2
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
+|+|.|++|+||||||+.+.........-..+..++...-+.....+...- .+.........+.+.+.+.+.....
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~-~~~~~g~p~~~d~~~l~~~L~~l~~ 76 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERG-LMDRKGFPESYDMEALLKFLKDIKS 76 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhh-hhhcCCCcccCCHHHHHHHHHHHHC
Confidence 589999999999999998886432100111234455444333222222211 1111111145566677766666655
No 257
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.08 E-value=0.035 Score=51.43 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+++|.|+.|.|||||++.+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999998753
No 258
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=96.08 E-value=0.06 Score=58.55 Aligned_cols=46 Identities=24% Similarity=0.389 Sum_probs=37.3
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++|....++++.+.+..-. ....-|.|+|..|+||+.+|+.+++.
T Consensus 220 ~iiG~S~~m~~~~~~i~~~A----~s~~pVLI~GE~GTGKe~~A~~IH~~ 265 (538)
T PRK15424 220 DLLGQSPQMEQVRQTILLYA----RSSAAVLIQGETGTGKELAAQAIHRE 265 (538)
T ss_pred heeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCCCHHHHHHHHHHh
Confidence 48999999998888875432 23357899999999999999999874
No 259
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.17 Score=50.33 Aligned_cols=131 Identities=8% Similarity=-0.025 Sum_probs=74.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhh-----------ccCCceEEEEeCCCCCHHHHHHH
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQ-----------RHFQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~-----------~~F~~~~wv~vs~~~~~~~~l~~ 261 (600)
-++|...+..+ .-.....++|+.|+||+++|..+....--. ...+...|+.-....
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-------- 72 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-------- 72 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--------
Confidence 34566666433 234577899999999999997776532110 001111122100000
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH-
Q 039283 262 ILNSIASDQCTDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA- 334 (600)
Q Consensus 262 il~~l~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~- 334 (600)
.....++.. .+.+.+ .++.=++|+|+++..+...+..++..+.....++.+|++|.+. .+.
T Consensus 73 -----------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~ 140 (290)
T PRK05917 73 -----------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPP 140 (290)
T ss_pred -----------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcH
Confidence 001223222 222222 2455688999999988889999998887766777777766664 333
Q ss_pred hhcCccceeecCCC
Q 039283 335 ETMRAVSTKTLKEL 348 (600)
Q Consensus 335 ~~~~~~~~~~l~~L 348 (600)
+..+....+.+.++
T Consensus 141 TI~SRcq~~~~~~~ 154 (290)
T PRK05917 141 TIRSRSLSIHIPME 154 (290)
T ss_pred HHHhcceEEEccch
Confidence 22334456666654
No 260
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.08 E-value=0.05 Score=57.62 Aligned_cols=87 Identities=17% Similarity=0.093 Sum_probs=47.0
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD--VFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
.+++.++|++|+||||++..+.........-..+..++... +. ..+-+....+.++.+.. ...+...+...+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~-~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~- 297 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT-YRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL- 297 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc-cHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-
Confidence 46899999999999999887765332112223455555432 21 12223333443443322 223344455555442
Q ss_pred CCCcEEEEEecCC
Q 039283 289 SGKKFLLVLDDVW 301 (600)
Q Consensus 289 ~~k~~LlVlDdv~ 301 (600)
. ..=+|++|..-
T Consensus 298 ~-~~DlVlIDt~G 309 (424)
T PRK05703 298 R-DCDVILIDTAG 309 (424)
T ss_pred C-CCCEEEEeCCC
Confidence 2 34578889763
No 261
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=96.06 E-value=0.16 Score=51.56 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=33.5
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHH
Q 039283 342 TKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 391 (600)
Q Consensus 342 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai 391 (600)
.+++++++.+|+..++.-..-.... ......+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l-~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWL-RSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcc-ccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999877643322 111233355666777779999644
No 262
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=96.05 E-value=0.064 Score=58.34 Aligned_cols=46 Identities=24% Similarity=0.274 Sum_probs=37.1
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++|....++++.+.+..-. ....-|.|.|..|+||+.+|+.+++.
T Consensus 213 ~iiG~S~~m~~~~~~i~~~A----~~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 213 DLLGASAPMEQVRALVRLYA----RSDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred heeeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCcCHHHHHHHHHHh
Confidence 48999999988888875432 23357899999999999999999863
No 263
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.05 E-value=0.021 Score=56.45 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=18.6
Q ss_pred eEEEEEccCCChHHHHHHHHhhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
+.|.|+|.||+||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 478999999999999999998743
No 264
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.05 E-value=0.033 Score=58.85 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=22.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDR 236 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~ 236 (600)
.+.++.++|++|+||||++..++....
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~ 120 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFK 120 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 457999999999999999988876443
No 265
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.04 E-value=0.061 Score=53.53 Aligned_cols=53 Identities=21% Similarity=0.171 Sum_probs=36.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSI 266 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l 266 (600)
-.++.|.|++|+|||+++.++..... ..+-..++|+++.. +..++...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 35889999999999999988876432 22234577888765 3556666665543
No 266
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.03 E-value=0.013 Score=54.10 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.|.|.|++|.||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999875
No 267
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.053 Score=59.11 Aligned_cols=133 Identities=16% Similarity=0.139 Sum_probs=76.1
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
...+.+.++|++|.|||.||+.+.+ ....+| +.+... .++... .........+.+....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~--~~~~~f-----i~v~~~--------~l~sk~------vGesek~ir~~F~~A~ 332 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRF-----ISVKGS--------ELLSKW------VGESEKNIRELFEKAR 332 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHh--hCCCeE-----EEeeCH--------HHhccc------cchHHHHHHHHHHHHH
Confidence 4566899999999999999999987 222233 222211 111111 1222333444455555
Q ss_pred CCCcEEEEEecCCCC------C-----hhhHHhhcCCCCC--CCCCcEEEEeccChHHHhh-c----CccceeecCCCCH
Q 039283 289 SGKKFLLVLDDVWNE------N-----YNSWRALSCPFGA--GASGSKIVVTHRNQGVAET-M----RAVSTKTLKELSD 350 (600)
Q Consensus 289 ~~k~~LlVlDdv~~~------~-----~~~~~~l~~~l~~--~~~gs~IlvTtR~~~v~~~-~----~~~~~~~l~~L~~ 350 (600)
+..+++|.+|.+..- + ......++..+.. ...+..||-||-....... + .-...+.+.+-+.
T Consensus 333 ~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~ 412 (494)
T COG0464 333 KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDL 412 (494)
T ss_pred cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCH
Confidence 678999999999421 1 0123333333332 2234445555554432221 1 1135788899999
Q ss_pred HHHHHHHHHhhc
Q 039283 351 DDCLRVLIQHSL 362 (600)
Q Consensus 351 ~ea~~Lf~~~a~ 362 (600)
++..+.|..+..
T Consensus 413 ~~r~~i~~~~~~ 424 (494)
T COG0464 413 EERLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHHHhc
Confidence 999999988874
No 268
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.02 E-value=0.041 Score=54.87 Aligned_cols=81 Identities=22% Similarity=0.141 Sum_probs=44.0
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccC--CceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF--QIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKK 286 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~ 286 (600)
..+.+|+|.|+.|+||||+|+.+..-. .... ..+..++...-......+... ..+.........+.+.+...+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll--~~~~~~g~V~vi~~D~f~~~~~~l~~~-g~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALL--SRWPEHRKVELITTDGFLHPNQVLKER-NLMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH--hhcCCCCceEEEecccccccHHHHHHc-CCccccCCChhccHHHHHHHHHH
Confidence 456899999999999999998775421 1111 123344444333222222221 00111111255667777777777
Q ss_pred HhCCCc
Q 039283 287 QLSGKK 292 (600)
Q Consensus 287 ~L~~k~ 292 (600)
...++.
T Consensus 137 Lk~g~~ 142 (290)
T TIGR00554 137 LKSGKP 142 (290)
T ss_pred HHCCCC
Confidence 766543
No 269
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.013 Score=61.18 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=56.4
Q ss_pred ccccccc---hHHHHHHHHhcCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHH
Q 039283 185 EVYGREK---DKEAIVELLLRDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTV 258 (600)
Q Consensus 185 ~~vGR~~---e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 258 (600)
++-|-|+ |+++|+++|.++.. -+..=++=|.++|++|.|||-||++++-...+ -+|...+..|+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V------PFF~~sGSEFd---- 374 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV------PFFYASGSEFD---- 374 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC------CeEeccccchh----
Confidence 4566664 67788888866532 12233567899999999999999999863322 12223333332
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCC
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVW 301 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~ 301 (600)
+++- ........+.+...-+.-+|+|.+|.++
T Consensus 375 --Em~V---------GvGArRVRdLF~aAk~~APcIIFIDEiD 406 (752)
T KOG0734|consen 375 --EMFV---------GVGARRVRDLFAAAKARAPCIIFIDEID 406 (752)
T ss_pred --hhhh---------cccHHHHHHHHHHHHhcCCeEEEEechh
Confidence 1111 1112222333334445679999999984
No 270
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.039 Score=58.99 Aligned_cols=88 Identities=17% Similarity=0.083 Sum_probs=46.0
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC--HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD--VFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ 287 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~ 287 (600)
...+++|+|++|+||||++..+............+..++.. .+. ..+.+......++.... ...+...+...+...
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtD-tyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~l 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLERL 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecc-cccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHHh
Confidence 35799999999999999998887633222112234444432 222 22223333333332211 223334444444433
Q ss_pred hCCCcEEEEEecCC
Q 039283 288 LSGKKFLLVLDDVW 301 (600)
Q Consensus 288 L~~k~~LlVlDdv~ 301 (600)
. ..=+|++|..-
T Consensus 427 -~-~~DLVLIDTaG 438 (559)
T PRK12727 427 -R-DYKLVLIDTAG 438 (559)
T ss_pred -c-cCCEEEecCCC
Confidence 3 34588888874
No 271
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.00 E-value=0.032 Score=62.63 Aligned_cols=86 Identities=21% Similarity=0.148 Sum_probs=57.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKL 284 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l 284 (600)
..-+++-|+|++|+|||||+.+++.. ....-..++|++....++.. .+++++..... .....+.....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 35678899999999999999776653 22334567899888777642 55666543211 233445555666
Q ss_pred HHHhC-CCcEEEEEecCC
Q 039283 285 KKQLS-GKKFLLVLDDVW 301 (600)
Q Consensus 285 ~~~L~-~k~~LlVlDdv~ 301 (600)
...++ ++.-|||+|.+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 66554 466799999984
No 272
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.00 E-value=0.048 Score=56.72 Aligned_cols=89 Identities=13% Similarity=0.110 Sum_probs=51.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhc--cCCceEEEEeCCCCCH--HHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQR--HFQIKAWTCVSEDFDV--FTVSKSILNSIASDQCTDKDDLNLLQEKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~--~F~~~~wv~vs~~~~~--~~~l~~il~~l~~~~~~~~~~~~~l~~~l~ 285 (600)
..+++.++|+.|+||||.+..+........ +-..+..+++. .+.. ..-+....+.++.+.. ...+.+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 357999999999999999988876443221 11233344433 3332 3335555555554322 3334455555554
Q ss_pred HHhCCCcEEEEEecCCC
Q 039283 286 KQLSGKKFLLVLDDVWN 302 (600)
Q Consensus 286 ~~L~~k~~LlVlDdv~~ 302 (600)
.. .+.-++++|....
T Consensus 251 ~~--~~~DlVLIDTaGr 265 (388)
T PRK12723 251 QS--KDFDLVLVDTIGK 265 (388)
T ss_pred Hh--CCCCEEEEcCCCC
Confidence 43 3456888999854
No 273
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.98 E-value=0.049 Score=50.11 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
++.++|++|+||||++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999888764
No 274
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.97 E-value=0.0052 Score=53.28 Aligned_cols=21 Identities=38% Similarity=0.669 Sum_probs=19.1
Q ss_pred EEEEccCCChHHHHHHHHhhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~ 234 (600)
|+|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998874
No 275
>PRK10867 signal recognition particle protein; Provisional
Probab=95.97 E-value=0.033 Score=58.72 Aligned_cols=25 Identities=40% Similarity=0.441 Sum_probs=20.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+.++.++|++|+||||++..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4689999999999999988776653
No 276
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.96 E-value=0.014 Score=55.86 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++.|+|+.|.|||||.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999998874
No 277
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.96 E-value=0.031 Score=57.39 Aligned_cols=87 Identities=18% Similarity=0.144 Sum_probs=46.5
Q ss_pred ceEEEEEccCCChHHH-HHHHHhhhhhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 211 FSVVSIKGLGGVGKTT-LAQLVNKDDRVQRHFQIKAWTCVSE-DFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTt-LA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
.+++.++||.|+|||| ||+..+.. .....=..+..++... .....+-++...+-++.+.. ...+..++...+...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~-~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l- 279 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY-VMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL- 279 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH-HhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh-
Confidence 6899999999999985 56554432 2112223445555432 11344455555565655543 334445555444432
Q ss_pred CCCcEEEEEecCC
Q 039283 289 SGKKFLLVLDDVW 301 (600)
Q Consensus 289 ~~k~~LlVlDdv~ 301 (600)
++. =+|.+|-+.
T Consensus 280 ~~~-d~ILVDTaG 291 (407)
T COG1419 280 RDC-DVILVDTAG 291 (407)
T ss_pred hcC-CEEEEeCCC
Confidence 233 355567664
No 278
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.93 E-value=0.061 Score=55.84 Aligned_cols=84 Identities=19% Similarity=0.156 Sum_probs=49.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l~ 285 (600)
.-.++.|.|.+|+|||||+.+++.... ..-..++|++..+. ...+ ..-+..++..... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a--~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLA--KRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 446999999999999999998876432 22345667776443 3332 2223444432211 1234444444443
Q ss_pred HHhCCCcEEEEEecCC
Q 039283 286 KQLSGKKFLLVLDDVW 301 (600)
Q Consensus 286 ~~L~~k~~LlVlDdv~ 301 (600)
..++-+||+|.+.
T Consensus 156 ---~~~~~lVVIDSIq 168 (372)
T cd01121 156 ---ELKPDLVIIDSIQ 168 (372)
T ss_pred ---hcCCcEEEEcchH
Confidence 2467789999983
No 279
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=95.92 E-value=0.015 Score=63.51 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=75.6
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 262 (600)
...++|+...++++.+.+.... ....-|.|+|..|+|||++|+.+..... ..-...+.|++..-.+ ..+.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a----~~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~~~--~~~e-- 255 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVA----ASDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAALPE--SLAE-- 255 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccCCh--HHHH--
Confidence 3568999999999988886543 2345789999999999999999986321 1112334556554321 2221
Q ss_pred HHHhhcCCCCCcccH-HHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEEEeccC
Q 039283 263 LNSIASDQCTDKDDL-NLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIVVTHRN 330 (600)
Q Consensus 263 l~~l~~~~~~~~~~~-~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~ 330 (600)
..+.+......... ......+. ....-.|+||++..........+...+..+. ...+||.||..
T Consensus 256 -~~lfG~~~g~~~ga~~~~~g~~~---~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 256 -SELFGHVKGAFTGAISNRSGKFE---LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred -HHhcCccccccCCCcccCCcchh---hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 12222111000000 00000111 1123357899998777666666665553321 24688888865
Q ss_pred h
Q 039283 331 Q 331 (600)
Q Consensus 331 ~ 331 (600)
.
T Consensus 332 ~ 332 (509)
T PRK05022 332 D 332 (509)
T ss_pred C
Confidence 4
No 280
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.92 E-value=0.045 Score=50.33 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=58.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC--CCCHHHHHHHHHHHhhc--CCCC--Cc------cc-H
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE--DFDVFTVSKSILNSIAS--DQCT--DK------DD-L 277 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~l~~il~~l~~--~~~~--~~------~~-~ 277 (600)
-.+++|.|+.|.|||||.+.+..-. ......+++.-.. ....... ...++. +... .. -+ -
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~~---~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~~~~~~~~~t~~e~lLS~G 100 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRLY---DPTSGEILIDGVDLRDLDLESL----RKNIAYVPQDPFLFSGTIRENILSGG 100 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC---CCCCCEEEECCEEhhhcCHHHH----HhhEEEEcCCchhccchHHHHhhCHH
Confidence 3589999999999999999997632 1223333332110 0011110 111110 0000 00 00 1
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCC-CChhhHHhhcCCCCCCCCCcEEEEeccChHHHhh
Q 039283 278 NLLQEKLKKQLSGKKFLLVLDDVWN-ENYNSWRALSCPFGAGASGSKIVVTHRNQGVAET 336 (600)
Q Consensus 278 ~~l~~~l~~~L~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~ 336 (600)
+...-.+...+-.++-+++||+-.. .|......+...+.....+..||++|.+......
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 1111224455566788999999742 2333333333333222234678888887766543
No 281
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.91 E-value=0.036 Score=53.64 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=23.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+...+++|.|++|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988864
No 282
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.90 E-value=0.021 Score=52.06 Aligned_cols=116 Identities=16% Similarity=0.039 Sum_probs=60.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC--CCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE--DFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~--~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
.+++|.|+.|.|||||.+.+.... ......+++.-.. ..+..+... ..++... +-..-+...-.+...+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHHHh
Confidence 589999999999999999987532 2334445543211 111111111 1111100 11111222333455566
Q ss_pred CCcEEEEEecCCC-CChhhHHhhcCCCCCC-CCCcEEEEeccChHHHh
Q 039283 290 GKKFLLVLDDVWN-ENYNSWRALSCPFGAG-ASGSKIVVTHRNQGVAE 335 (600)
Q Consensus 290 ~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IlvTtR~~~v~~ 335 (600)
.++-++++|+.-. .|......+...+... ..|..||++|.+.....
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 6788899999742 3333344443333221 23667888888865443
No 283
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=95.88 E-value=0.016 Score=55.83 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=37.9
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHH
Q 039283 192 DKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVS 259 (600)
Q Consensus 192 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l 259 (600)
+...+.+.+.... ++..+|+|+|+||+|||||...+........+=-.++=|+-+.+++--.++
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlL 77 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALL 77 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCccc
Confidence 4556666665432 467899999999999999998887755433333334455556666544444
No 284
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.88 E-value=0.033 Score=58.02 Aligned_cols=25 Identities=32% Similarity=0.258 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...++.|+|++|+||||++..+...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999888764
No 285
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.88 E-value=0.047 Score=48.63 Aligned_cols=104 Identities=18% Similarity=0.147 Sum_probs=55.3
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
.+++|.|+.|.|||||++.+.... ......+|+.-.. .+..-. +-..-+...-.+...+-.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~~~~-------------~i~~~~--~lS~G~~~rv~laral~~~ 88 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL---EPDEGIVTWGSTV-------------KIGYFE--QLSGGEKMRLALAKLLLEN 88 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC---CCCceEEEECCeE-------------EEEEEc--cCCHHHHHHHHHHHHHhcC
Confidence 589999999999999999987632 1223444442100 000000 0111112222345555667
Q ss_pred cEEEEEecCCC-CChhhHHhhcCCCCCCCCCcEEEEeccChHHHh
Q 039283 292 KFLLVLDDVWN-ENYNSWRALSCPFGAGASGSKIVVTHRNQGVAE 335 (600)
Q Consensus 292 ~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~ 335 (600)
+-++++|+.-. .|......+...+... +..||++|.+.....
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~ 131 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD 131 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence 78899999742 3333333333333222 246777777765543
No 286
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.85 E-value=0.052 Score=52.56 Aligned_cols=49 Identities=18% Similarity=0.097 Sum_probs=31.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 262 (600)
.-.++.|.|++|+||||||.++..... +. -..+++++... +..++++.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~-g~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFL-QN-GYSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH-hC-CCcEEEEeCCC--CHHHHHHHH
Confidence 345999999999999999866655321 12 23456666333 455665555
No 287
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.82 E-value=0.032 Score=54.01 Aligned_cols=122 Identities=16% Similarity=0.167 Sum_probs=66.6
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhh-hc----------cC---CceEEEEe----CCCC--CH----------------
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRV-QR----------HF---QIKAWTCV----SEDF--DV---------------- 255 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~-~~----------~F---~~~~wv~v----s~~~--~~---------------- 255 (600)
.+++|+|+.|.|||||.+.+.--.+. .. .. ..+.||.= ...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 69999999999999999998762110 00 01 12334421 1111 11
Q ss_pred ------HHHHHHHHHHhhcCCC----CCcccHHHHH-HHHHHHhCCCcEEEEEecCC----CCChhhHHhhcCCCCCCCC
Q 039283 256 ------FTVSKSILNSIASDQC----TDKDDLNLLQ-EKLKKQLSGKKFLLVLDDVW----NENYNSWRALSCPFGAGAS 320 (600)
Q Consensus 256 ------~~~l~~il~~l~~~~~----~~~~~~~~l~-~~l~~~L~~k~~LlVlDdv~----~~~~~~~~~l~~~l~~~~~ 320 (600)
.+...+.++.++...- ...-+-.+.+ -.|.+.|..++=||+||.-- .......-.++..+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 1334444554443211 0112222333 34667888899999999852 22223334444444443
Q ss_pred CcEEEEeccChHHHh
Q 039283 321 GSKIVVTHRNQGVAE 335 (600)
Q Consensus 321 gs~IlvTtR~~~v~~ 335 (600)
|+.||+.|-+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 888999998865443
No 288
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.80 E-value=0.075 Score=48.60 Aligned_cols=116 Identities=12% Similarity=-0.014 Sum_probs=57.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEE-------EeCCCCCH--HHHHHHHHHHhhcCCCCCcccHHHHH
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWT-------CVSEDFDV--FTVSKSILNSIASDQCTDKDDLNLLQ 281 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv-------~vs~~~~~--~~~l~~il~~l~~~~~~~~~~~~~l~ 281 (600)
-.+++|+|+.|.|||||++.+...... ....+++ .+.+.... ..+...+.-. ... .-..-+...
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~-~LS~G~~~r 99 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPW---GSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDD-VLSGGEQQR 99 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCCceEEEECCCCccccccHHHHhhcc---CCC-CCCHHHHHH
Confidence 358999999999999999998764221 1122211 11222211 1222222110 111 112222223
Q ss_pred HHHHHHhCCCcEEEEEecCCC-CChhhHHhhcCCCCCCCCCcEEEEeccChHHHh
Q 039283 282 EKLKKQLSGKKFLLVLDDVWN-ENYNSWRALSCPFGAGASGSKIVVTHRNQGVAE 335 (600)
Q Consensus 282 ~~l~~~L~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~ 335 (600)
-.+...+-.++=++++|+--. .|......+...+... +..||++|.+.....
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 334555556777889998632 2333333333333222 356777777765543
No 289
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.78 E-value=0.0087 Score=57.11 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.0
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+..+|+|.|++|+|||||++.+...
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999999998864
No 290
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.78 E-value=0.0075 Score=53.48 Aligned_cols=21 Identities=38% Similarity=0.566 Sum_probs=19.1
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998875
No 291
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.78 E-value=0.0072 Score=56.93 Aligned_cols=81 Identities=23% Similarity=0.327 Sum_probs=44.0
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhccCC---ceEEEEeCCCCCHHHHHHHHHHHhhcC---CCCCcccHHHHHHHHHH
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ---IKAWTCVSEDFDVFTVSKSILNSIASD---QCTDKDDLNLLQEKLKK 286 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~---~~~wv~vs~~~~~~~~l~~il~~l~~~---~~~~~~~~~~l~~~l~~ 286 (600)
+|+|.|++|+||||+|+.+...... .... ....++............. -...... ......+.+.+.+.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 6899999999999999999874321 1122 1233332222221111111 1111000 11145677888888888
Q ss_pred HhCCCcEEE
Q 039283 287 QLSGKKFLL 295 (600)
Q Consensus 287 ~L~~k~~Ll 295 (600)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 777766544
No 292
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=95.77 E-value=0.044 Score=61.44 Aligned_cols=157 Identities=14% Similarity=0.155 Sum_probs=80.4
Q ss_pred ccccccchHHHHHHHHhc---CCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHH
Q 039283 185 EVYGREKDKEAIVELLLR---DDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTV 258 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~---~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 258 (600)
.+.|-+...+++.+.+.- ... ....-.+-+.|+|++|+|||++|+.+.... ...| +.++.+. +
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~--~~~f---~~is~~~------~ 221 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSD------F 221 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCCE---EEEehHH------h
Confidence 456766666555554421 100 001123459999999999999999997632 2222 2222211 1
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC----------hhhH----HhhcCCCCC--CCCCc
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN----------YNSW----RALSCPFGA--GASGS 322 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~----------~~~~----~~l~~~l~~--~~~gs 322 (600)
..... ..........+.......+++|+||+++.-. ...+ ..++..+.. ...+.
T Consensus 222 ----~~~~~------g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~v 291 (644)
T PRK10733 222 ----VEMFV------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 291 (644)
T ss_pred ----HHhhh------cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCe
Confidence 11111 1112223333444445678999999985421 0111 222222221 12345
Q ss_pred EEEEeccChHHHhh-c---C-ccceeecCCCCHHHHHHHHHHhhc
Q 039283 323 KIVVTHRNQGVAET-M---R-AVSTKTLKELSDDDCLRVLIQHSL 362 (600)
Q Consensus 323 ~IlvTtR~~~v~~~-~---~-~~~~~~l~~L~~~ea~~Lf~~~a~ 362 (600)
.+|.||...+.... . + -...+.+...+.++-.+++..+..
T Consensus 292 ivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~ 336 (644)
T PRK10733 292 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMR 336 (644)
T ss_pred eEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhh
Confidence 56667766543221 1 1 135677888888888888877653
No 293
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.76 E-value=0.017 Score=56.41 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=45.8
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 194 EAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.+|+..+... .++..+|+|+|.||+|||||...+........+--.++=|+-|.+++--.++.+=++
T Consensus 38 ~~ll~~l~p~----tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiR 104 (323)
T COG1703 38 RELLRALYPR----TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIR 104 (323)
T ss_pred HHHHHHHhhc----CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhh
Confidence 4455555443 367789999999999999999888775544444444556667777776555544443
No 294
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.75 E-value=0.017 Score=51.75 Aligned_cols=35 Identities=29% Similarity=0.208 Sum_probs=26.0
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEE
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTC 248 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~ 248 (600)
.+|.|+|.+|+||||||+.+.... ...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L--~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL--FARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH--HHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH--HHcCCcEEEec
Confidence 589999999999999999998743 33334455554
No 295
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.73 E-value=0.068 Score=52.76 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED 252 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 252 (600)
..-.++.|.|++|+|||+++.++..... ..-..+++++...+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a--~~Ge~vlyis~Ee~ 75 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQA--SRGNPVLFVTVESP 75 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHH--hCCCcEEEEEecCC
Confidence 3457899999999999999988765321 23346778887643
No 296
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.71 E-value=0.1 Score=51.65 Aligned_cols=129 Identities=16% Similarity=0.100 Sum_probs=65.7
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCC-
Q 039283 192 DKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQ- 270 (600)
Q Consensus 192 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~- 270 (600)
..+.+...|... +....++|.|+.|+|||||.+.+.... ......+++.-. .....+...++......-.
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~---~~~~G~i~~~g~-~v~~~d~~~ei~~~~~~~~q 167 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL---STGISQLGLRGK-KVGIVDERSEIAGCVNGVPQ 167 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc---CCCCceEEECCE-EeecchhHHHHHHHhccccc
Confidence 344455555432 345789999999999999999988632 222334443211 1111111122322221110
Q ss_pred CC------CcccHHHHHHHHHHHh-CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHHh
Q 039283 271 CT------DKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVAE 335 (600)
Q Consensus 271 ~~------~~~~~~~l~~~l~~~L-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~ 335 (600)
.. ...+.... ..+...+ ...+=+|++|.+-. .+.+..+...+. .|..+|+||.+..+..
T Consensus 168 ~~~~~r~~v~~~~~k~-~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 168 HDVGIRTDVLDGCPKA-EGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVED 233 (270)
T ss_pred ccccccccccccchHH-HHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHH
Confidence 00 00111111 1122222 25788999999843 344555554443 4778999998765543
No 297
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.71 E-value=0.008 Score=45.98 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+++|.|.+|+||||+++.+...
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 298
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.70 E-value=0.0087 Score=56.20 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=27.8
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccC--------CceEEEEeCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHF--------QIKAWTCVSED 252 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F--------~~~~wv~vs~~ 252 (600)
.++.|.|++|+|||+++..+..+......| ..+.|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 489999999999999998887755433222 25668776655
No 299
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.70 E-value=0.081 Score=54.33 Aligned_cols=91 Identities=13% Similarity=0.061 Sum_probs=53.7
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED-FDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ 287 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~ 287 (600)
.+.+++.|+|+.|+||||++..+...... .-..+.+++.... ....+-++...+.++.+.. ...+..++...+...
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~--~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l 280 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLK--QNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYM 280 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHH
Confidence 34689999999999999999888764322 2233455655322 1234455555665554322 234555565555443
Q ss_pred hC-CCcEEEEEecCCC
Q 039283 288 LS-GKKFLLVLDDVWN 302 (600)
Q Consensus 288 L~-~k~~LlVlDdv~~ 302 (600)
-. +..=+|++|-.-.
T Consensus 281 ~~~~~~D~VLIDTAGr 296 (407)
T PRK12726 281 TYVNCVDHILIDTVGR 296 (407)
T ss_pred HhcCCCCEEEEECCCC
Confidence 21 3445788898844
No 300
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.69 E-value=0.079 Score=52.63 Aligned_cols=91 Identities=14% Similarity=0.170 Sum_probs=48.4
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCH--HHHHHHHHHHhhcCCC--CCcccH-HHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDV--FTVSKSILNSIASDQC--TDKDDL-NLLQEK 283 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~--~~~l~~il~~l~~~~~--~~~~~~-~~l~~~ 283 (600)
++.+++.++|++|+||||++..++.... ..-..+.+++.. .+.. .+-+....+..+.+.. ....+. ......
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~--~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLK--KQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 3568999999999999999988876432 222234455433 3322 2333444454442210 011222 222344
Q ss_pred HHHHhCCCcEEEEEecCCC
Q 039283 284 LKKQLSGKKFLLVLDDVWN 302 (600)
Q Consensus 284 l~~~L~~k~~LlVlDdv~~ 302 (600)
+........=++++|-.-.
T Consensus 147 l~~~~~~~~D~ViIDT~G~ 165 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAGR 165 (272)
T ss_pred HHHHHHCCCCEEEEeCCCC
Confidence 4444444445788888743
No 301
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.064 Score=54.84 Aligned_cols=96 Identities=21% Similarity=0.149 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT 272 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~ 272 (600)
..++...|-..- -.-.++.|-|.+|||||||.-++..... ..- .+.+|+-.+.. .+ .+--++.|+.....
T Consensus 79 ~~EldRVLGGG~----V~Gs~iLIgGdPGIGKSTLLLQva~~lA--~~~-~vLYVsGEES~--~Q-iklRA~RL~~~~~~ 148 (456)
T COG1066 79 IEELDRVLGGGL----VPGSVILIGGDPGIGKSTLLLQVAARLA--KRG-KVLYVSGEESL--QQ-IKLRADRLGLPTNN 148 (456)
T ss_pred hHHHHhhhcCCc----ccccEEEEccCCCCCHHHHHHHHHHHHH--hcC-cEEEEeCCcCH--HH-HHHHHHHhCCCccc
Confidence 445555553221 2346899999999999999988887433 222 56677655442 22 22334455533222
Q ss_pred ----CcccHHHHHHHHHHHhCCCcEEEEEecCC
Q 039283 273 ----DKDDLNLLQEKLKKQLSGKKFLLVLDDVW 301 (600)
Q Consensus 273 ----~~~~~~~l~~~l~~~L~~k~~LlVlDdv~ 301 (600)
...+.+...+.+.+ .++-++|+|-+.
T Consensus 149 l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQ 178 (456)
T COG1066 149 LYLLAETNLEDIIAELEQ---EKPDLVVIDSIQ 178 (456)
T ss_pred eEEehhcCHHHHHHHHHh---cCCCEEEEeccc
Confidence 33455555555544 688999999984
No 302
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.68 E-value=0.28 Score=43.58 Aligned_cols=83 Identities=13% Similarity=0.241 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHhhcHHHHH
Q 039283 4 GEAVLTVSVELLIEKLASKGLELFTRHEKLKADLIKWKGMLEMIQAVLADAEDRKTK-DKAVKKWLDNLQNLAYDAEDVL 82 (600)
Q Consensus 4 ~~~~~s~~~~~l~~~l~~~~~~~~~~~~~v~~~~~~l~~~l~~i~~~L~~ae~~~~~-~~~~~~Wl~~lr~~ayd~eD~l 82 (600)
|+.+.+++++.+++.|..............+.-+++|..+++.|..++++.+..+.. |..-+.=+++|.+...++++++
T Consensus 3 ~eL~~gaalG~~~~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV 82 (147)
T PF05659_consen 3 AELVGGAALGAVFGELLKAVIDASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELV 82 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 444455555555555555544444555556788999999999999999998875332 3333677888899999999999
Q ss_pred HHHH
Q 039283 83 DELE 86 (600)
Q Consensus 83 D~~~ 86 (600)
+.|.
T Consensus 83 ~k~s 86 (147)
T PF05659_consen 83 EKCS 86 (147)
T ss_pred HHhc
Confidence 8863
No 303
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.68 E-value=0.022 Score=56.59 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhh
Q 039283 194 EAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+.+.+.... +-+.++|+.|+|||++++....
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~ 55 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLS 55 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhc
Confidence 44555555433 5779999999999999988775
No 304
>PRK06547 hypothetical protein; Provisional
Probab=95.67 E-value=0.016 Score=53.26 Aligned_cols=26 Identities=42% Similarity=0.546 Sum_probs=23.0
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....+|+|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998764
No 305
>PRK06762 hypothetical protein; Provisional
Probab=95.66 E-value=0.0094 Score=54.51 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=21.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+.+|.|+|++|+||||+|+.+.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999998863
No 306
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.64 E-value=0.052 Score=50.13 Aligned_cols=102 Identities=14% Similarity=0.075 Sum_probs=54.3
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEE------eCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTC------VSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLK 285 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~------vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~ 285 (600)
.+++|.|+.|+|||||++.+..-. ......+++. +.+... -..-+...-.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~i~~~~q~~~-------------------LSgGq~qrv~la 83 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL---IPNGDNDEWDGITPVYKPQYID-------------------LSGGELQRVAIA 83 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC---CCCCcEEEECCEEEEEEcccCC-------------------CCHHHHHHHHHH
Confidence 599999999999999999887532 1222333321 111100 111112223344
Q ss_pred HHhCCCcEEEEEecCCC-CChhhHHhhcCCCCCC--CCCcEEEEeccChHHHh
Q 039283 286 KQLSGKKFLLVLDDVWN-ENYNSWRALSCPFGAG--ASGSKIVVTHRNQGVAE 335 (600)
Q Consensus 286 ~~L~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~--~~gs~IlvTtR~~~v~~ 335 (600)
..+..++-++++|+--. .+......+...+... ..+..||++|.+.....
T Consensus 84 ral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 84 AALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred HHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH
Confidence 55566778899999742 2333333333333221 12256777777765544
No 307
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.64 E-value=0.05 Score=50.10 Aligned_cols=22 Identities=41% Similarity=0.591 Sum_probs=20.4
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|.|+.|.|||||.+.+..
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G 50 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILG 50 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999999875
No 308
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=95.61 E-value=0.027 Score=61.52 Aligned_cols=134 Identities=12% Similarity=-0.006 Sum_probs=70.8
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|....+.++.+.+.... ..-.-|.|+|..|+||+.||+.+.... . ..-...+.++++.-. .+.+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A----~~~~pvlI~GE~GtGK~~lA~aiH~~s-~-r~~~pfv~inca~~~--~~~~e~-- 273 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLA----MLDAPLLITGDTGTGKDLLAYACHLRS-P-RGKKPFLALNCASIP--DDVVES-- 273 (520)
T ss_pred cceeECCHHHHHHHHHHHHHh----CCCCCEEEECCCCccHHHHHHHHHHhC-C-CCCCCeEEeccccCC--HHHHHH--
Confidence 358999988888887774322 122348899999999999999976521 1 111223455555432 222222
Q ss_pred HHhhcCCCCCcccHHHH-HHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEEEeccCh
Q 039283 264 NSIASDQCTDKDDLNLL-QEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIVVTHRNQ 331 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l-~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~~ 331 (600)
.+.+............ ...+. ....-.|+||+++.........+...+..+. ...+||.||..+
T Consensus 274 -elFG~~~~~~~~~~~~~~g~~e---~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 274 -ELFGHAPGAYPNALEGKKGFFE---QANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred -HhcCCCCCCcCCcccCCCChhh---hcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 2222111000000000 00011 1123457899998877666666655543321 235788877654
No 309
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=95.60 E-value=0.041 Score=50.91 Aligned_cols=119 Identities=17% Similarity=0.063 Sum_probs=61.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC---CCCHHHHHHHHH--HHh--hcC----CCCCccc---
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE---DFDVFTVSKSIL--NSI--ASD----QCTDKDD--- 276 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~---~~~~~~~l~~il--~~l--~~~----~~~~~~~--- 276 (600)
...|.|+|..|-||||+|-.+.- +...+=-.+..+..-+ .......+..+- ... +.. ......+
T Consensus 22 ~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~ 99 (191)
T PRK05986 22 KGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAA 99 (191)
T ss_pred CCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHH
Confidence 46899999999999999955543 2222222233333222 223333333210 000 000 0001111
Q ss_pred HHHHHHHHHHHhCCCc-EEEEEecCCC---CChhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 277 LNLLQEKLKKQLSGKK-FLLVLDDVWN---ENYNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 277 ~~~l~~~l~~~L~~k~-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
.....+..++.+.+.+ =|||||.+-. ...-..+++...+.....+..||+|-|+.
T Consensus 100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1223334455554444 4999999821 11223445555665556678999999986
No 310
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.56 E-value=0.011 Score=56.32 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=22.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...+|+|+|++|+|||||++.+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999863
No 311
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.55 E-value=0.027 Score=52.21 Aligned_cols=22 Identities=45% Similarity=0.669 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 312
>PTZ00088 adenylate kinase 1; Provisional
Probab=95.53 E-value=0.017 Score=55.68 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-|.|.|++|+||||+|+.+...
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988763
No 313
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=95.51 E-value=0.015 Score=48.94 Aligned_cols=22 Identities=45% Similarity=0.582 Sum_probs=19.1
Q ss_pred EEEEccCCChHHHHHHHHhhhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~~ 235 (600)
|.|+|++|+|||+||+.+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999987743
No 314
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=95.51 E-value=0.02 Score=50.74 Aligned_cols=44 Identities=25% Similarity=0.344 Sum_probs=31.2
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcC
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASD 269 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~ 269 (600)
+|.|.|++|+||||+|+.+.++.-.. .+ +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-------~v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-------LV------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-------ee------eccHHHHHHHHHcCCC
Confidence 68999999999999999998743221 11 2345677777776543
No 315
>PRK04328 hypothetical protein; Provisional
Probab=95.49 E-value=0.063 Score=52.67 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=31.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED 252 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 252 (600)
.-.++.|.|++|+|||+|+.++.... ...-..++|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCC
Confidence 45799999999999999998876532 233456788887664
No 316
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.43 E-value=0.11 Score=51.21 Aligned_cols=90 Identities=12% Similarity=0.110 Sum_probs=47.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF-DVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
..+++++|++|+||||++..+..... ..-..+.+++..... ....-+....+.++.+.. ...+...+.+.+...-+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~--~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~~ 151 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFKE 151 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH--HcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHHh
Confidence 36999999999999999988865322 111234455543221 122222233333332211 22344445444443322
Q ss_pred -CCcEEEEEecCCCC
Q 039283 290 -GKKFLLVLDDVWNE 303 (600)
Q Consensus 290 -~k~~LlVlDdv~~~ 303 (600)
.+.=++++|..-..
T Consensus 152 ~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 152 EARVDYILIDTAGKN 166 (270)
T ss_pred cCCCCEEEEECCCCC
Confidence 24458889988543
No 317
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=95.43 E-value=0.039 Score=57.28 Aligned_cols=51 Identities=24% Similarity=0.341 Sum_probs=37.5
Q ss_pred CccccccchHHHHHHHHhcC--------CCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 184 DEVYGREKDKEAIVELLLRD--------DLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++|.++.++.+.-.+... .......++.|.++|++|+|||+||+.+...
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~ 70 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL 70 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889998888887666542 0001223478999999999999999999874
No 318
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.36 E-value=0.086 Score=48.53 Aligned_cols=119 Identities=17% Similarity=0.069 Sum_probs=59.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhc--CCCC--Cc--------ccHH
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIAS--DQCT--DK--------DDLN 278 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~--~~~~--~~--------~~~~ 278 (600)
-.+++|+|+.|.|||||++.+.... ......+++.-....+.. ..+-..++. +... .. -+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~---~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 26 GEIYGLLGPNGAGKTTLIKIILGLL---KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHH
Confidence 3589999999999999999987632 122333443211000000 011111110 0000 00 0111
Q ss_pred -HHHHHHHHHhCCCcEEEEEecCCC-CChhhHHhhcCCCCCC-CCCcEEEEeccChHHHh
Q 039283 279 -LLQEKLKKQLSGKKFLLVLDDVWN-ENYNSWRALSCPFGAG-ASGSKIVVTHRNQGVAE 335 (600)
Q Consensus 279 -~l~~~l~~~L~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IlvTtR~~~v~~ 335 (600)
...-.+...+..++=++++|+.-. .|......+...+... ..|..||++|.+.....
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~ 159 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAE 159 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHH
Confidence 122235566667888999999743 2333333333333221 13567888888776554
No 319
>PRK13948 shikimate kinase; Provisional
Probab=95.36 E-value=0.19 Score=46.56 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.....|.++|+.|+||||+++.+...
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999998763
No 320
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.35 E-value=0.028 Score=52.26 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 321
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.33 E-value=0.019 Score=57.92 Aligned_cols=50 Identities=28% Similarity=0.455 Sum_probs=43.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhh
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..|+|.++.+++|++.+.....+.+..-+++.++||.|.|||||+..+.+
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 46999999999999999776544556778999999999999999988875
No 322
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.32 E-value=0.28 Score=51.99 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=31.5
Q ss_pred cchHHHHHHHHhcCCC-CCCCCceEEEEEccCCChHHHHHHHHhh
Q 039283 190 EKDKEAIVELLLRDDL-RADDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 190 ~~e~~~l~~~L~~~~~-~~~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+-+.++.+||..... ...-+.+++.|+|++|+||||.++.+..
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLsk 132 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSK 132 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHH
Confidence 3457788888871100 0123557999999999999999988875
No 323
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.34 Score=50.34 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=19.9
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+--.++||||.|||+++.++++.
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhh
Confidence 45679999999999999988874
No 324
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=95.31 E-value=0.065 Score=54.62 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.4
Q ss_pred EEEEccCCChHHHHHHHHhhhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~~ 235 (600)
+++.|++|.||||+++.+....
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l 23 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATL 23 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998644
No 325
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=95.31 E-value=0.12 Score=50.59 Aligned_cols=120 Identities=16% Similarity=0.132 Sum_probs=79.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
+.|+|-.. .+++..++.... ..-+.+.|+|..|+|||+-++.+++. .+...-+..+..++...+...+.
T Consensus 72 ~~~l~tkt-~r~~~~~~~~A~----k~g~l~~vyg~~g~gKt~a~~~y~~s------~p~~~l~~~~p~~~a~~~i~~i~ 140 (297)
T COG2842 72 PDFLETKT-VRRIFFRTRPAS----KTGSLVVVYGYAGLGKTQAAKNYAPS------NPNALLIEADPSYTALVLILIIC 140 (297)
T ss_pred ccccccch-hHhHhhhhhhhh----hcCceEEEeccccchhHHHHHhhccc------CccceeecCChhhHHHHHHHHHH
Confidence 34666543 344455543322 23348899999999999999888762 23334455667777777777776
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCC
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGA 317 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~ 317 (600)
....... ..........+...+.+..-+|+.|+........++.+......
T Consensus 141 ~~~~~~~---~~~~~d~~~~~~~~l~~~~~~iivDEA~~L~~~ale~lr~i~d~ 191 (297)
T COG2842 141 AAAFGAT---DGTINDLTERLMIRLRDTVRLIIVDEADRLPYRALEELRRIHDK 191 (297)
T ss_pred HHHhccc---chhHHHHHHHHHHHHccCcceeeeehhhccChHHHHHHHHHHHh
Confidence 6665543 24455566667777788899999999987777777777655443
No 326
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.30 E-value=0.052 Score=52.44 Aligned_cols=87 Identities=25% Similarity=0.255 Sum_probs=52.7
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhcc-CCceEEEEeCCCCCHHHHHHHHHHHhhcC--------------CCCC
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH-FQIKAWTCVSEDFDVFTVSKSILNSIASD--------------QCTD 273 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~l~~il~~l~~~--------------~~~~ 273 (600)
+.-.++.|.|++|+|||+|+.++.... ... =..++|++...+ ..++.+.+- .++.. ....
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~--~~~~ge~vlyvs~ee~--~~~l~~~~~-s~g~d~~~~~~~g~l~~~d~~~~ 91 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNG--LKNFGEKVLYVSFEEP--PEELIENMK-SFGWDLEEYEDSGKLKIIDAFPE 91 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH--HHHHT--EEEEESSS---HHHHHHHHH-TTTS-HHHHHHTTSEEEEESSGG
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHh--hhhcCCcEEEEEecCC--HHHHHHHHH-HcCCcHHHHhhcCCEEEEecccc
Confidence 355799999999999999998876532 122 345678887654 344444332 22210 0001
Q ss_pred -----cccHHHHHHHHHHHhCC-CcEEEEEecC
Q 039283 274 -----KDDLNLLQEKLKKQLSG-KKFLLVLDDV 300 (600)
Q Consensus 274 -----~~~~~~l~~~l~~~L~~-k~~LlVlDdv 300 (600)
..+.+.+...+.+.++. +...+|+|.+
T Consensus 92 ~~~~~~~~~~~l~~~i~~~i~~~~~~~vVIDsl 124 (226)
T PF06745_consen 92 RIGWSPNDLEELLSKIREAIEELKPDRVVIDSL 124 (226)
T ss_dssp GST-TSCCHHHHHHHHHHHHHHHTSSEEEEETH
T ss_pred cccccccCHHHHHHHHHHHHHhcCCCEEEEECH
Confidence 34567777777776654 4578999987
No 327
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.29 E-value=0.11 Score=55.52 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=50.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l~ 285 (600)
.-.++.|.|.+|+|||||+.++..... ..-..++|++..+. ...+.. -++.++..... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a--~~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA--AAGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 456999999999999999998876432 22335678776543 333322 23444432110 2234455444443
Q ss_pred HHhCCCcEEEEEecCC
Q 039283 286 KQLSGKKFLLVLDDVW 301 (600)
Q Consensus 286 ~~L~~k~~LlVlDdv~ 301 (600)
+ .++-++|+|.+.
T Consensus 154 ~---~~~~lVVIDSIq 166 (446)
T PRK11823 154 E---EKPDLVVIDSIQ 166 (446)
T ss_pred h---hCCCEEEEechh
Confidence 2 366699999984
No 328
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=95.24 E-value=0.049 Score=48.80 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
++.|+|.+|+||||||+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 4789999999999999988764
No 329
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.24 E-value=0.015 Score=54.23 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+.++|+|.|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999998875
No 330
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.22 E-value=0.019 Score=49.28 Aligned_cols=27 Identities=41% Similarity=0.682 Sum_probs=17.9
Q ss_pred EEEEccCCChHHHHHHHHhhhhhhhccCC
Q 039283 214 VSIKGLGGVGKTTLAQLVNKDDRVQRHFQ 242 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~~~~~~~F~ 242 (600)
|.|+|.+|+|||++|+.+... ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~--~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS--LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH--TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH--cCCcee
Confidence 689999999999999999873 444553
No 331
>PRK03839 putative kinase; Provisional
Probab=95.21 E-value=0.015 Score=53.98 Aligned_cols=22 Identities=41% Similarity=0.780 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.|.|.|++|+||||+++.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999874
No 332
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.21 E-value=0.042 Score=56.38 Aligned_cols=66 Identities=24% Similarity=0.162 Sum_probs=48.8
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.++|++..+..+...+... +.+.+.|++|+|||+||+.+.... . ....+|.+.......+++....
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~l--~---~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARAL--G---LPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHHh--C---CCeEEEecCCCCCHHHhcCchh
Confidence 3789888888887777655 368999999999999999998632 2 2346777777777766654443
No 333
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.19 E-value=0.051 Score=53.74 Aligned_cols=51 Identities=24% Similarity=0.105 Sum_probs=38.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
+.-+++.|+|.+|+|||+++.++.. ........++||+..+. ..++...+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~--~~~l~~~~~ 71 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES--PEELLENAR 71 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC--HHHHHHHHH
Confidence 4568999999999999999988876 34455788999998765 344444333
No 334
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=95.19 E-value=0.14 Score=54.86 Aligned_cols=97 Identities=13% Similarity=0.075 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT 272 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~ 272 (600)
...|.+.|... -..-.++.|.|.+|+|||||+.++..... ..-..++|++..+. ..++.. -+..++.....
T Consensus 80 i~~LD~vLgGG----i~~GsvilI~G~pGsGKTTL~lq~a~~~a--~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~ 150 (454)
T TIGR00416 80 FGELDRVLGGG----IVPGSLILIGGDPGIGKSTLLLQVACQLA--KNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPN 150 (454)
T ss_pred cHHHHHHhcCC----ccCCeEEEEEcCCCCCHHHHHHHHHHHHH--hcCCcEEEEECcCC--HHHHHH-HHHHcCCChHH
Confidence 44555655322 13457999999999999999988866432 22235678776543 333222 12233321110
Q ss_pred ----CcccHHHHHHHHHHHhCCCcEEEEEecCC
Q 039283 273 ----DKDDLNLLQEKLKKQLSGKKFLLVLDDVW 301 (600)
Q Consensus 273 ----~~~~~~~l~~~l~~~L~~k~~LlVlDdv~ 301 (600)
...+.+.+.+.+.+ .+.-++|+|.+.
T Consensus 151 l~~~~e~~~~~I~~~i~~---~~~~~vVIDSIq 180 (454)
T TIGR00416 151 LYVLSETNWEQICANIEE---ENPQACVIDSIQ 180 (454)
T ss_pred eEEcCCCCHHHHHHHHHh---cCCcEEEEecch
Confidence 22344444444432 356689999984
No 335
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.19 E-value=0.13 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=21.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...+++++|+.|+||||++..+...
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999877653
No 336
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.17 E-value=0.017 Score=53.15 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+...|.|+|++|+||||+|+.+...
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999863
No 337
>PRK04040 adenylate kinase; Provisional
Probab=95.12 E-value=0.018 Score=53.88 Aligned_cols=23 Identities=39% Similarity=0.562 Sum_probs=20.8
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+|+|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999988763
No 338
>PF13479 AAA_24: AAA domain
Probab=95.10 E-value=0.079 Score=50.65 Aligned_cols=31 Identities=29% Similarity=0.274 Sum_probs=23.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED 252 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 252 (600)
-.+.|+|.+|+||||+|..+ +..++++....
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~----------~k~l~id~E~g 34 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL----------PKPLFIDTENG 34 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC----------CCeEEEEeCCC
Confidence 46889999999999999544 45566666544
No 339
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=95.10 E-value=0.053 Score=61.10 Aligned_cols=131 Identities=16% Similarity=0.086 Sum_probs=70.8
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.++|.+..+.++.+.+.... ....-|.|+|..|+||+++|+.+.+... ..-...+.|++..-. ...+..+++.
T Consensus 326 ~l~g~s~~~~~~~~~~~~~a----~~~~pvli~Ge~GtGK~~~A~~ih~~s~--r~~~pfv~vnc~~~~-~~~~~~elfg 398 (638)
T PRK11388 326 HMPQDSPQMRRLIHFGRQAA----KSSFPVLLCGEEGVGKALLAQAIHNESE--RAAGPYIAVNCQLYP-DEALAEEFLG 398 (638)
T ss_pred ceEECCHHHHHHHHHHHHHh----CcCCCEEEECCCCcCHHHHHHHHHHhCC--ccCCCeEEEECCCCC-hHHHHHHhcC
Confidence 48899988888887775432 1223478999999999999999976321 111122445544432 1222222222
Q ss_pred HhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEEEeccCh
Q 039283 265 SIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIVVTHRNQ 331 (600)
Q Consensus 265 ~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~~ 331 (600)
....... ... ...+. ....-.|+||++..........+...+..+. ...+||.||...
T Consensus 399 ~~~~~~~--~~~----~g~~~---~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~ 467 (638)
T PRK11388 399 SDRTDSE--NGR----LSKFE---LAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTAD 467 (638)
T ss_pred CCCcCcc--CCC----CCcee---ECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCC
Confidence 1100000 000 00000 1234469999998777666666665553321 145777777653
No 340
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.10 E-value=0.15 Score=49.28 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=30.0
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED 252 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 252 (600)
.-.++.|.|++|+|||+|+.++..... ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~--~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGL--RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHH--hcCCeEEEEEccCC
Confidence 457999999999999999988765321 23456788876443
No 341
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=95.07 E-value=0.038 Score=52.35 Aligned_cols=121 Identities=12% Similarity=0.095 Sum_probs=59.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC--CcccHHHHHHHHHHHh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT--DKDDLNLLQEKLKKQL 288 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~--~~~~~~~l~~~l~~~L 288 (600)
..++.|.|+.|.||||+.+.+....-. .+ ....+.... .. ..+...|+..++..... .......-...+...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~~l-a~--~G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLAIM-AQ--IGCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH-HH--cCCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 368999999999999999888643211 11 111221111 01 12223333333322110 0001111111122222
Q ss_pred --CCCcEEEEEecCCCC-Chhh----HHhhcCCCCCCCCCcEEEEeccChHHHhhcC
Q 039283 289 --SGKKFLLVLDDVWNE-NYNS----WRALSCPFGAGASGSKIVVTHRNQGVAETMR 338 (600)
Q Consensus 289 --~~k~~LlVlDdv~~~-~~~~----~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~ 338 (600)
..++-|+++|..... +..+ ...+...+.. .|+.+|++|-...++..+.
T Consensus 104 ~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 DYADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILG 158 (204)
T ss_pred HhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhh
Confidence 356789999998432 1212 1122233332 3778999999988776554
No 342
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.06 E-value=0.056 Score=51.47 Aligned_cols=84 Identities=21% Similarity=0.304 Sum_probs=49.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhhc-------CCCCCcccHH----
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF-DVFTVSKSILNSIAS-------DQCTDKDDLN---- 278 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~l~~il~~l~~-------~~~~~~~~~~---- 278 (600)
-.-++|.|.+|+|||+|+..+.++.. -+..+++.+++.. ...++..++...-.. ....+.....
T Consensus 15 Gqr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~ 90 (215)
T PF00006_consen 15 GQRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAP 90 (215)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHH
T ss_pred CCEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhh
Confidence 36789999999999999999987542 2334777776553 344455544332110 0110111111
Q ss_pred ----HHHHHHHHHhCCCcEEEEEecC
Q 039283 279 ----LLQEKLKKQLSGKKFLLVLDDV 300 (600)
Q Consensus 279 ----~l~~~l~~~L~~k~~LlVlDdv 300 (600)
...+.++. .++.+|+++||+
T Consensus 91 ~~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 91 YTALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHHH--TTSEEEEEEETH
T ss_pred ccchhhhHHHhh--cCCceeehhhhh
Confidence 11222333 689999999998
No 343
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.05 E-value=0.18 Score=56.67 Aligned_cols=25 Identities=32% Similarity=0.337 Sum_probs=21.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
..+++++|+.|+||||++..+....
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999998887643
No 344
>COG4240 Predicted kinase [General function prediction only]
Probab=95.04 E-value=0.11 Score=48.72 Aligned_cols=84 Identities=17% Similarity=0.125 Sum_probs=56.0
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhc----CCCCCcccHHHHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIAS----DQCTDKDDLNLLQEKL 284 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~----~~~~~~~~~~~l~~~l 284 (600)
+++-+++|.|+-|+||||++..+++....+.- ...+-.++.+-+-...-...++++... .......+..-+...|
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 56789999999999999999999886544432 355666665555444444555555321 1112567777788888
Q ss_pred HHHhCCCcE
Q 039283 285 KKQLSGKKF 293 (600)
Q Consensus 285 ~~~L~~k~~ 293 (600)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 888777644
No 345
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.02 E-value=0.59 Score=44.55 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=80.9
Q ss_pred cccc-cchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 186 VYGR-EKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 186 ~vGR-~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
++|+ ++.+++|.+.+.-+-. -+-.+++-+.++|++|.|||-||+.|+.+ ..+-|+.+|.. +
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh-------t~c~firvsgs----e 216 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH-------TDCTFIRVSGS----E 216 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh-------cceEEEEechH----H
Confidence 4544 6666666665532210 02345677899999999999999999863 34455666643 2
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hhh---HHhhcCCCCC--CCCC
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------YNS---WRALSCPFGA--GASG 321 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~-----------~~~---~~~l~~~l~~--~~~g 321 (600)
+ .+..-+. ...-..++. .-.-..-+.+|..|.+++.. .+. .-+++..|.. ..++
T Consensus 217 l----vqk~ige---gsrmvrelf---vmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkn 286 (404)
T KOG0728|consen 217 L----VQKYIGE---GSRMVRELF---VMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKN 286 (404)
T ss_pred H----HHHHhhh---hHHHHHHHH---HHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccc
Confidence 2 2222111 111111111 11113567788888885321 111 1122333322 2356
Q ss_pred cEEEEeccChHHHhh--cC---ccceeecCCCCHHHHHHHHHHhh
Q 039283 322 SKIVVTHRNQGVAET--MR---AVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 322 s~IlvTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
.+||+.|..-++... +. -...++.++-+.+.-.++++-+.
T Consensus 287 ikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 287 IKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred eEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 788877755433321 11 22557777777777777776543
No 346
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.01 E-value=0.16 Score=55.93 Aligned_cols=97 Identities=21% Similarity=0.214 Sum_probs=58.8
Q ss_pred ccccccchHHHHHHHHhcCCC------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDL------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTV 258 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 258 (600)
++=|-++-+.+|.+-+.-+-. .+-.+..=|.++|++|.|||-||++|+.... .-|++|-.+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcs-------L~FlSVKGP------ 739 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECS-------LNFLSVKGP------ 739 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhce-------eeEEeecCH------
Confidence 345677777777776532110 0112345688999999999999999987321 235566544
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCC
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN 302 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~ 302 (600)
+++...-+ .+.+...+...+.-..++|+|.||.+++
T Consensus 740 --ELLNMYVG------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 --ELLNMYVG------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred --HHHHHHhc------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 23333222 2233344444444456999999999964
No 347
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=95.01 E-value=0.053 Score=56.00 Aligned_cols=84 Identities=17% Similarity=0.191 Sum_probs=48.8
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
..++=+-|+|..|.|||.|+..+|+...++.. ......+.+.++-+.+..... ....+ ..+.+.+
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k----------~R~HFh~Fm~~vh~~l~~~~~-~~~~l----~~va~~l 124 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRK----------RRVHFHEFMLDVHSRLHQLRG-QDDPL----PQVADEL 124 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccc----------ccccccHHHHHHHHHHHHHhC-CCccH----HHHHHHH
Confidence 35677899999999999999999986433211 001122334444443332211 22222 2334455
Q ss_pred CCCcEEEEEecCCCCChhh
Q 039283 289 SGKKFLLVLDDVWNENYNS 307 (600)
Q Consensus 289 ~~k~~LlVlDdv~~~~~~~ 307 (600)
.++..||+||.+.-.|..+
T Consensus 125 ~~~~~lLcfDEF~V~DiaD 143 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIAD 143 (362)
T ss_pred HhcCCEEEEeeeeccchhH
Confidence 5677799999986655433
No 348
>PF13245 AAA_19: Part of AAA domain
Probab=95.01 E-value=0.052 Score=42.35 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=16.7
Q ss_pred eEEEEEccCCChHHHHH-HHHhh
Q 039283 212 SVVSIKGLGGVGKTTLA-QLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA-~~v~~ 233 (600)
+++.|.|++|.|||+++ +.+..
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57888999999999555 44443
No 349
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.00 E-value=0.17 Score=48.49 Aligned_cols=48 Identities=29% Similarity=0.200 Sum_probs=34.6
Q ss_pred cccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhh
Q 039283 186 VYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+=|=.+++++|.+...-+-. -+-+.++-|.++|++|.|||-+|++|.|
T Consensus 179 vggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan 233 (435)
T KOG0729|consen 179 VGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN 233 (435)
T ss_pred ccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc
Confidence 44556777777776533211 1234567789999999999999999988
No 350
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.00 E-value=0.019 Score=53.24 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.4
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+++|+|++|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988764
No 351
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=94.99 E-value=0.14 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-.+++|.|+.|.|||||.+.+..
T Consensus 28 Gei~~l~G~NGaGKTTLl~~l~G 50 (301)
T TIGR03522 28 GRIVGFLGPNGAGKSTTMKIITG 50 (301)
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998875
No 352
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.96 E-value=0.036 Score=48.25 Aligned_cols=41 Identities=32% Similarity=0.208 Sum_probs=28.4
Q ss_pred chHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhh
Q 039283 191 KDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 191 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
++..++-+.|...- ..-.++.+.|.-|+||||+++.+....
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34445555553321 233589999999999999999998753
No 353
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.93 E-value=0.13 Score=55.68 Aligned_cols=61 Identities=15% Similarity=0.021 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHH
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 261 (600)
+..|.+.|... -..-.++.|.|++|+|||||+.++.... ..+-..+++++..+. ..++...
T Consensus 249 i~~lD~~lgGG----~~~gs~~li~G~~G~GKt~l~~~f~~~~--~~~ge~~~y~s~eEs--~~~i~~~ 309 (484)
T TIGR02655 249 VVRLDEMCGGG----FFKDSIILATGATGTGKTLLVSKFLENA--CANKERAILFAYEES--RAQLLRN 309 (484)
T ss_pred hHhHHHHhcCC----ccCCcEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeCC--HHHHHHH
Confidence 34566666332 2456799999999999999998887643 233445677766554 4444444
No 354
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.92 E-value=0.14 Score=54.81 Aligned_cols=88 Identities=17% Similarity=0.124 Sum_probs=45.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE-DFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
..+++++|+.|+||||++..++...........+..++... .....+-+....+.++.... ...+..+....+ ..++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~-~~~~~~Dl~~aL-~~L~ 333 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVH-AVKDAADLRLAL-SELR 333 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCee-ccCCchhHHHHH-Hhcc
Confidence 36999999999999999988886443222222334444322 12233444555555543322 111222222222 2334
Q ss_pred CCcEEEEEecCC
Q 039283 290 GKKFLLVLDDVW 301 (600)
Q Consensus 290 ~k~~LlVlDdv~ 301 (600)
++ -.+++|-.-
T Consensus 334 d~-d~VLIDTaG 344 (484)
T PRK06995 334 NK-HIVLIDTIG 344 (484)
T ss_pred CC-CeEEeCCCC
Confidence 43 466777763
No 355
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.91 E-value=0.017 Score=54.54 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+|+|.|++|+|||||++.+...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988763
No 356
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=94.90 E-value=0.12 Score=50.61 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=62.5
Q ss_pred ccccccchHHHHHHHHhcCCC-CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc-cCCceEEEEeCCCCCHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDL-RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR-HFQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~-~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~l~~i 262 (600)
.++|..--.+.++..+.+--. ....++=+++.+|.+|+||.-.++.+.++..... +-+ .....
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~---------------~V~~f 147 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSP---------------FVHHF 147 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccch---------------hHHHh
Confidence 356655545555544432111 0345678999999999999999988887532111 111 11111
Q ss_pred HHHhhcCCCCCcccHH----HHHHHHHHHhC-CCcEEEEEecCCCCChhhHHhhcCCCC
Q 039283 263 LNSIASDQCTDKDDLN----LLQEKLKKQLS-GKKFLLVLDDVWNENYNSWRALSCPFG 316 (600)
Q Consensus 263 l~~l~~~~~~~~~~~~----~l~~~l~~~L~-~k~~LlVlDdv~~~~~~~~~~l~~~l~ 316 (600)
...+.-+ .....+ ++...++..++ -++-|+|||+++.....-.+.+...|.
T Consensus 148 vat~hFP---~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLd 203 (344)
T KOG2170|consen 148 VATLHFP---HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLD 203 (344)
T ss_pred hhhccCC---ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhc
Confidence 1111111 222222 33333443333 378999999998877666666655544
No 357
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.90 E-value=0.017 Score=53.65 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=19.1
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~ 21 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVE 21 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 358
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.89 E-value=0.053 Score=57.03 Aligned_cols=50 Identities=26% Similarity=0.310 Sum_probs=34.8
Q ss_pred CccccccchHHHHHHHHhcC----CC------CCCCCceEEEEEccCCChHHHHHHHHhh
Q 039283 184 DEVYGREKDKEAIVELLLRD----DL------RADDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~----~~------~~~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..++|.+..++.|...+... .. ........+.++|++|+|||+||+.+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45899999888876554210 00 0011235789999999999999999975
No 359
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=94.87 E-value=0.072 Score=56.11 Aligned_cols=88 Identities=18% Similarity=0.215 Sum_probs=47.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcC-----CCCCcccHHH-----
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASD-----QCTDKDDLNL----- 279 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~-----~~~~~~~~~~----- 279 (600)
.-..++|+|++|+|||||++.+.... .....+++..-.+.-++.++....+...... ...+......
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~---~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARAD---AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC---CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 34589999999999999998887532 1222344443323445555544444433111 0001111111
Q ss_pred HHHHHHHHh--CCCcEEEEEecC
Q 039283 280 LQEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 280 l~~~l~~~L--~~k~~LlVlDdv 300 (600)
..-.+.+++ +++.+||++||+
T Consensus 241 ~a~~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHHcCCCEEEeccch
Confidence 111233333 489999999998
No 360
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=94.86 E-value=0.2 Score=48.88 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=36.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNS 265 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~ 265 (600)
.-.++.|.|.+|+|||+++.++..+.... +=..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~-~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKK-QGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCceEEEeCCC--CHHHHHHHHHHH
Confidence 34689999999999999998887643322 133566777655 456666666544
No 361
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.86 E-value=0.13 Score=48.55 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-.+++|+|+.|.|||||.+.+...
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 26 GEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 359999999999999999988764
No 362
>PRK00625 shikimate kinase; Provisional
Probab=94.85 E-value=0.021 Score=52.54 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.|.|+|++|+||||+++.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998763
No 363
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=94.83 E-value=0.035 Score=48.41 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=41.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
..+-|.|+|-+|+|||||+..+.... ..-|+++++-..-..+... ..........+.+.+.+.|...+.
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~-------~~~~i~isd~vkEn~l~~g----yDE~y~c~i~DEdkv~D~Le~~m~ 74 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT-------GLEYIEISDLVKENNLYEG----YDEEYKCHILDEDKVLDELEPLMI 74 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh-------CCceEehhhHHhhhcchhc----ccccccCccccHHHHHHHHHHHHh
Confidence 34568999999999999999887421 1246776643322222211 111111134566677777776665
Q ss_pred CC
Q 039283 290 GK 291 (600)
Q Consensus 290 ~k 291 (600)
+.
T Consensus 75 ~G 76 (176)
T KOG3347|consen 75 EG 76 (176)
T ss_pred cC
Confidence 43
No 364
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=94.83 E-value=0.041 Score=49.54 Aligned_cols=35 Identities=31% Similarity=0.483 Sum_probs=29.2
Q ss_pred chHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 191 KDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 191 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+++|.++|. + ++++++|..|+|||||+..+...
T Consensus 24 ~g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 45778888883 2 69999999999999999988764
No 365
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.82 E-value=0.12 Score=54.27 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.0
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+.+.+|.++|++|+||||++..++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999887653
No 366
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.82 E-value=0.029 Score=51.34 Aligned_cols=22 Identities=45% Similarity=0.525 Sum_probs=18.8
Q ss_pred EEEEccCCChHHHHHHHHhhhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~~ 235 (600)
+.|+|.+|+|||||++.+....
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 7899999999999999998754
No 367
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.82 E-value=0.029 Score=51.26 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.1
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
....+++|+|..|+|||||++.+....
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHH
Confidence 356799999999999999999988643
No 368
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=94.81 E-value=0.022 Score=52.61 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999998763
No 369
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.77 E-value=0.02 Score=51.32 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=18.8
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
++.|+|++|+||||+|+.+..
T Consensus 1 li~l~G~~GsGKST~a~~l~~ 21 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAE 21 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHh
Confidence 478999999999999998876
No 370
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.76 E-value=0.021 Score=51.24 Aligned_cols=20 Identities=45% Similarity=0.808 Sum_probs=18.2
Q ss_pred EEEEEccCCChHHHHHHHHh
Q 039283 213 VVSIKGLGGVGKTTLAQLVN 232 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~ 232 (600)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998775
No 371
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=94.76 E-value=0.03 Score=53.11 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|.|||||.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999874
No 372
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.75 E-value=0.077 Score=55.15 Aligned_cols=52 Identities=27% Similarity=0.366 Sum_probs=38.3
Q ss_pred CCccccccchHHHHHHHHhcC--------CCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 183 EDEVYGREKDKEAIVELLLRD--------DLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+..++|.+..++.+..++... ..........+.++|++|+|||+||+.+...
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~ 73 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL 73 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH
Confidence 345899999999988887541 1001122468899999999999999998764
No 373
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.70 E-value=0.025 Score=52.57 Aligned_cols=25 Identities=40% Similarity=0.526 Sum_probs=22.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
..+|+|-||=|+||||||+.+.++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4689999999999999999998743
No 374
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.66 E-value=0.1 Score=55.38 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=53.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhhcCC------CCCcccHHH---
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF-DVFTVSKSILNSIASDQ------CTDKDDLNL--- 279 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~l~~il~~l~~~~------~~~~~~~~~--- 279 (600)
.-+-++|.|.+|+|||||+..+.+.... .+-+.++++-+++.. ...+++..+...-.... ..+......
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~~-~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNISK-QHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHh-hCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 4468999999999999999888875432 245667777776554 34455555543211100 001111111
Q ss_pred --HHHHHHHHh---CCCcEEEEEecC
Q 039283 280 --LQEKLKKQL---SGKKFLLVLDDV 300 (600)
Q Consensus 280 --l~~~l~~~L---~~k~~LlVlDdv 300 (600)
..-.+.+++ .++++||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 112334444 379999999999
No 375
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=94.66 E-value=0.036 Score=51.59 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=26.9
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEE
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTC 248 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~ 248 (600)
.+++.|+|+.|+|||||++.+.. .....|...++.+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeec
Confidence 36899999999999999999986 3334564444443
No 376
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=94.65 E-value=0.025 Score=52.42 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
++++|+|++|+|||||++.+..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~ 23 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLE 23 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4799999999999999999986
No 377
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.63 E-value=0.032 Score=51.52 Aligned_cols=26 Identities=35% Similarity=0.401 Sum_probs=22.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...+++|+|++|+||||+|+.+....
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998743
No 378
>PRK15453 phosphoribulokinase; Provisional
Probab=94.63 E-value=0.2 Score=49.30 Aligned_cols=79 Identities=11% Similarity=0.094 Sum_probs=43.8
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCC-ceEEEEeCCCC--CHHHHHHHHH--HHhhc--CC-CCCcccHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ-IKAWTCVSEDF--DVFTVSKSIL--NSIAS--DQ-CTDKDDLNLL 280 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~--~~~~~l~~il--~~l~~--~~-~~~~~~~~~l 280 (600)
....+|+|.|.+|+||||+|+.+.... . +.. ..+.++...-. +-.++-..+. +.-+. .. .....+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if--~-~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL 79 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIF--R-RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDEL 79 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH--h-hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHH
Confidence 355799999999999999999887522 1 111 23334332211 2222222111 11111 11 1256778888
Q ss_pred HHHHHHHhCC
Q 039283 281 QEKLKKQLSG 290 (600)
Q Consensus 281 ~~~l~~~L~~ 290 (600)
.+.++.+.++
T Consensus 80 ~~~l~~l~~~ 89 (290)
T PRK15453 80 EQLFREYGET 89 (290)
T ss_pred HHHHHHHhcC
Confidence 8888877654
No 379
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=94.61 E-value=0.062 Score=59.57 Aligned_cols=74 Identities=19% Similarity=0.115 Sum_probs=53.1
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
+.++|.+..++.|...+... +.+.|+|++|+||||+|+.+.... ...+++..+|..- ...+...+++.+.
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 45899998888888877432 368999999999999999988642 2334567778655 3335666777766
Q ss_pred HHhh
Q 039283 264 NSIA 267 (600)
Q Consensus 264 ~~l~ 267 (600)
.+++
T Consensus 101 ~~~G 104 (637)
T PRK13765 101 AGKG 104 (637)
T ss_pred HhcC
Confidence 5554
No 380
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=94.61 E-value=0.16 Score=53.70 Aligned_cols=90 Identities=19% Similarity=0.182 Sum_probs=52.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhhcCC------CCCcccHHH---
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF-DVFTVSKSILNSIASDQ------CTDKDDLNL--- 279 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~l~~il~~l~~~~------~~~~~~~~~--- 279 (600)
.-+-++|.|.+|+|||||+..+..+.... +=..++++-+++.. .+.+++..+...=.... ..+......
T Consensus 143 kGQR~gIfa~~GvGKt~Ll~~i~~~~~~~-~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 143 KGGKIGLFGGAGVGKTVLIQELINNIAKE-HGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHHhc-CCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 44689999999999999998887643322 12356666676554 34555555554311110 001111111
Q ss_pred --HHHHHHHHh---CCCcEEEEEecC
Q 039283 280 --LQEKLKKQL---SGKKFLLVLDDV 300 (600)
Q Consensus 280 --l~~~l~~~L---~~k~~LlVlDdv 300 (600)
..-.+.+++ +++++||++||+
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecch
Confidence 112244555 679999999999
No 381
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=94.58 E-value=0.039 Score=53.07 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=24.6
Q ss_pred CCCceEEEEEccCCChHHHHHHHHhhhhhh
Q 039283 208 DDGFSVVSIKGLGGVGKTTLAQLVNKDDRV 237 (600)
Q Consensus 208 ~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~ 237 (600)
.+.+.+|.++||+|+||||..+.++.+...
T Consensus 16 ~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~ 45 (366)
T KOG1532|consen 16 IQRPVIILVVGMAGSGKTTFMQRLNSHLHA 45 (366)
T ss_pred ccCCcEEEEEecCCCCchhHHHHHHHHHhh
Confidence 345678889999999999999999876443
No 382
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=94.54 E-value=0.072 Score=45.58 Aligned_cols=46 Identities=24% Similarity=0.361 Sum_probs=32.7
Q ss_pred cccccchH----HHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 186 VYGREKDK----EAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 186 ~vGR~~e~----~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
++|..-.. +.|.+.+.+. ...++-|++.+|.+|+|||.+++.+.++
T Consensus 27 l~GQhla~~~v~~ai~~~l~~~---~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 27 LFGQHLAVEVVVNAIKGHLANP---NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred ccCcHHHHHHHHHHHHHHHcCC---CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 55655444 4455555443 3467789999999999999999888775
No 383
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=94.53 E-value=0.12 Score=53.33 Aligned_cols=109 Identities=12% Similarity=0.171 Sum_probs=58.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
..+.|.|+.|+||||+.+.+... ........++. +.++... ..... ..+-.... ...+.....+.++..|...
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~--i~~~~~~~i~t-iEdp~E~--~~~~~-~~~i~q~e-vg~~~~~~~~~l~~~lr~~ 195 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDY--INKNAAGHIIT-IEDPIEY--VHRNK-RSLINQRE-VGLDTLSFANALRAALRED 195 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh--hCcCCCCEEEE-EcCChhh--hccCc-cceEEccc-cCCCCcCHHHHHHHhhccC
Confidence 68999999999999999887763 22233444443 3332111 00000 00000000 1111223456677788888
Q ss_pred cEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH
Q 039283 292 KFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG 332 (600)
Q Consensus 292 ~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 332 (600)
+=+|++|.+. +.+.+...... ...|..++.|.-..+
T Consensus 196 pd~i~vgEir--d~~~~~~~l~a---a~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 196 PDVILIGEMR--DLETVELALTA---AETGHLVFGTLHTNS 231 (343)
T ss_pred CCEEEEeCCC--CHHHHHHHHHH---HHcCCcEEEEEcCCC
Confidence 9999999995 34455443322 223555666665443
No 384
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=94.51 E-value=0.03 Score=47.73 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=19.6
Q ss_pred EEEEccCCChHHHHHHHHhhhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~~ 235 (600)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998654
No 385
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=94.51 E-value=0.07 Score=57.79 Aligned_cols=46 Identities=20% Similarity=0.344 Sum_probs=35.5
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++|+...+.++.+.+.... .....|.|+|.+|+|||++|+.+...
T Consensus 139 ~lig~s~~~~~l~~~~~~~~----~~~~~vli~Ge~GtGK~~lA~~ih~~ 184 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLS----RSSISVLINGESGTGKELVAHALHRH 184 (469)
T ss_pred cceecCHHHHHHHHHHHHHh----ccCCeEEEEeCCCCcHHHHHHHHHhc
Confidence 58899888888877764332 23346889999999999999988763
No 386
>PRK06217 hypothetical protein; Validated
Probab=94.47 E-value=0.028 Score=52.35 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHhhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
.|.|.|.+|+||||||+.+....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998743
No 387
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.47 E-value=0.078 Score=51.09 Aligned_cols=21 Identities=33% Similarity=0.409 Sum_probs=15.7
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+..|+|++|.|||+++..+..
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~ 39 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIA 39 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHH
Confidence 789999999999977765554
No 388
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.45 E-value=0.044 Score=59.30 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=42.3
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEE
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTC 248 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~ 248 (600)
++.--.+-++++..||...-. .....+++.++||+|+||||.++.+++.. .|+..-|.+
T Consensus 20 eLavhkkKv~eV~~wl~~~~~-~~~~~~iLlLtGP~G~GKtttv~~La~el----g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFS-GSSPKRILLLTGPSGCGKTTTVKVLAKEL----GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhc-cCCCcceEEEECCCCCCHHHHHHHHHHHh----CCeeEEecC
Confidence 344456778899999975432 22345799999999999999999888632 355566764
No 389
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.44 E-value=0.05 Score=50.66 Aligned_cols=45 Identities=18% Similarity=0.100 Sum_probs=30.2
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHH
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 261 (600)
++.|.|++|+|||+|+.++..... ..-..++|++.... ..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~--~~g~~v~~~s~e~~--~~~~~~~ 45 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGL--ARGEPGLYVTLEES--PEELIEN 45 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH--HCCCcEEEEECCCC--HHHHHHH
Confidence 367999999999999988876422 22345678876543 4444433
No 390
>PRK14737 gmk guanylate kinase; Provisional
Probab=94.44 E-value=0.035 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...++.|+|++|+|||||++.+..
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~ 26 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLE 26 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999976
No 391
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.43 E-value=0.033 Score=52.82 Aligned_cols=24 Identities=25% Similarity=0.401 Sum_probs=21.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+++|+|++|+|||||++.+...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 468999999999999999998863
No 392
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.39 E-value=0.04 Score=48.74 Aligned_cols=39 Identities=23% Similarity=0.361 Sum_probs=27.3
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE 251 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 251 (600)
++|.|+|+.|+|||||++.+.+... ...+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~-~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELK-RRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHH-HTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh-HcCCceEEEEEccC
Confidence 4799999999999999999998542 24455555666554
No 393
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.39 E-value=0.042 Score=52.26 Aligned_cols=25 Identities=28% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCceEEEEEccCCChHHHHHHHHhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+.+.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 4668899999999999999998865
No 394
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.39 E-value=0.28 Score=51.62 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=19.7
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..++|+|++|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999998753
No 395
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=94.38 E-value=0.2 Score=49.24 Aligned_cols=91 Identities=14% Similarity=0.182 Sum_probs=52.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhh--hccCCceEEEEeCCCC-CHHHHHHHHHHHhhcCC------CCCcccHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRV--QRHFQIKAWTCVSEDF-DVFTVSKSILNSIASDQ------CTDKDDLNLL 280 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~--~~~F~~~~wv~vs~~~-~~~~~l~~il~~l~~~~------~~~~~~~~~l 280 (600)
.-+-++|.|.+|+|||+|+..+.++... +.+-+.++++-+++.. ...+++..+...=.... ..........
T Consensus 68 ~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~ 147 (276)
T cd01135 68 RGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERI 147 (276)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHH
Confidence 3457899999999999999888764321 1224567788887665 34555555544311110 0011111111
Q ss_pred -----HHHHHHHh---CCCcEEEEEecC
Q 039283 281 -----QEKLKKQL---SGKKFLLVLDDV 300 (600)
Q Consensus 281 -----~~~l~~~L---~~k~~LlVlDdv 300 (600)
.-.+.+++ .++++|+++||+
T Consensus 148 ~a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 148 ITPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11234444 378999999998
No 396
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.38 E-value=0.04 Score=52.01 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+...+++|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998876
No 397
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=94.36 E-value=0.099 Score=58.04 Aligned_cols=74 Identities=19% Similarity=0.115 Sum_probs=46.8
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
+.++|.++.++.+...+... +.+.++|++|+|||++|+.+.+... ...|...+++.- ...+...++..+.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~-~~~~~~~~~~~n-~~~~~~~~~~~v~ 87 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLP-DEELEDILVYPN-PEDPNMPRIVEVP 87 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcC-chhheeEEEEeC-CCCCchHHHHHHH
Confidence 45889998888888777432 2566999999999999999886321 223333333222 2224445566665
Q ss_pred HHhh
Q 039283 264 NSIA 267 (600)
Q Consensus 264 ~~l~ 267 (600)
..++
T Consensus 88 ~~~g 91 (608)
T TIGR00764 88 AGEG 91 (608)
T ss_pred Hhhc
Confidence 5554
No 398
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.33 E-value=0.029 Score=49.86 Aligned_cols=21 Identities=43% Similarity=0.800 Sum_probs=19.2
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+|.|.|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998876
No 399
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=94.33 E-value=0.036 Score=51.72 Aligned_cols=21 Identities=38% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
++.|+|+.|.||||+.+.+.-
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 467999999999999998874
No 400
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.33 E-value=0.16 Score=52.61 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=30.3
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED 252 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 252 (600)
.++.|.|.+|+|||.||-.++............+.++....
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~ 42 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHP 42 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecch
Confidence 48899999999999999888875422344556667766654
No 401
>PTZ00185 ATPase alpha subunit; Provisional
Probab=94.29 E-value=0.23 Score=52.82 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=50.9
Q ss_pred CceEEEEEccCCChHHHHH-HHHhhhhhhh-----ccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC-------Cccc
Q 039283 210 GFSVVSIKGLGGVGKTTLA-QLVNKDDRVQ-----RHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT-------DKDD 276 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA-~~v~~~~~~~-----~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~-------~~~~ 276 (600)
.-+-++|.|..|+|||+|| ..+.+...+. .+-..++++-+++..+...-+.+.+++-+.-... ....
T Consensus 188 RGQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~ 267 (574)
T PTZ00185 188 RGQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPA 267 (574)
T ss_pred CCCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCH
Confidence 4467899999999999997 5566543221 2334677888887764333344444433310000 1111
Q ss_pred HHH-----HHHHHHHHh--CCCcEEEEEecC
Q 039283 277 LNL-----LQEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 277 ~~~-----l~~~l~~~L--~~k~~LlVlDdv 300 (600)
..+ ..-.+.+++ +++.+|||+||+
T Consensus 268 ~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDL 298 (574)
T PTZ00185 268 GLQYLAPYSGVTMGEYFMNRGRHCLCVYDDL 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEcCc
Confidence 111 111223333 579999999999
No 402
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.28 E-value=0.22 Score=50.57 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=22.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...+++++|++|+||||++..+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 46799999999999999998887643
No 403
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=94.26 E-value=0.032 Score=49.26 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=19.3
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++|+|+.|+|||||++.+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhc
Confidence 3789999999999999998763
No 404
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.25 E-value=0.04 Score=45.91 Aligned_cols=22 Identities=41% Similarity=0.360 Sum_probs=19.5
Q ss_pred ceEEEEEccCCChHHHHHHHHh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVN 232 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~ 232 (600)
-..++|.|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3689999999999999998865
No 405
>PLN02348 phosphoribulokinase
Probab=94.24 E-value=0.059 Score=55.56 Aligned_cols=26 Identities=27% Similarity=0.447 Sum_probs=23.2
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+.+.+|+|.|.+|+||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999998874
No 406
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=94.24 E-value=0.18 Score=49.32 Aligned_cols=78 Identities=14% Similarity=0.117 Sum_probs=43.2
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC--HHHHHHHHHHHh----hcCC-CCCcccHHHHHHHHH
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD--VFTVSKSILNSI----ASDQ-CTDKDDLNLLQEKLK 285 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~--~~~~l~~il~~l----~~~~-~~~~~~~~~l~~~l~ 285 (600)
+|+|.|.+|+||||+++.+...... .-.....++...-+. -...-..+.... +-.. .....+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~--~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR--EGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh--cCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 5899999999999999988763321 111233444322222 112222222221 1111 125677888888888
Q ss_pred HHhCCCc
Q 039283 286 KQLSGKK 292 (600)
Q Consensus 286 ~~L~~k~ 292 (600)
.+.+++.
T Consensus 79 ~L~~g~~ 85 (277)
T cd02029 79 TYGETGR 85 (277)
T ss_pred HHHcCCC
Confidence 8877653
No 407
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.22 E-value=0.042 Score=52.84 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=20.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 447999999999999999988764
No 408
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.21 E-value=0.036 Score=51.73 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=20.0
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3789999999999999999965
No 409
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.19 E-value=0.043 Score=50.10 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++.|.||+|+|||||++.++.+
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~ 27 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLED 27 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 368899999999999999999874
No 410
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.17 E-value=0.12 Score=54.30 Aligned_cols=86 Identities=20% Similarity=0.232 Sum_probs=49.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhhcC-------CCCCcccHHHH-
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD-VFTVSKSILNSIASD-------QCTDKDDLNLL- 280 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~il~~l~~~-------~~~~~~~~~~l- 280 (600)
.-..++|.|..|+|||||++.+.... ..+..+..-+++... ..++...++..-+.. .. +.......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~ats-d~p~~~R~~ 235 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPA-DTSPLMRLK 235 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECC-CCCHHHHHH
Confidence 34689999999999999998887532 224555565665543 344555544331111 00 11111111
Q ss_pred ----HHHHHHHh--CCCcEEEEEecC
Q 039283 281 ----QEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 281 ----~~~l~~~L--~~k~~LlVlDdv 300 (600)
.-.+.+++ +++++||++||+
T Consensus 236 a~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 236 GCETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 11233444 589999999999
No 411
>PRK00698 tmk thymidylate kinase; Validated
Probab=94.16 E-value=0.22 Score=47.06 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=21.6
Q ss_pred eEEEEEccCCChHHHHHHHHhhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
.+|+|.|+.|+||||+++.+.+..
T Consensus 4 ~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998754
No 412
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=94.16 E-value=0.18 Score=57.27 Aligned_cols=132 Identities=14% Similarity=0.170 Sum_probs=74.3
Q ss_pred cchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcC
Q 039283 190 EKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASD 269 (600)
Q Consensus 190 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~ 269 (600)
...+.+|.+.+... .++.|.|+.|+||||-.-+++.+.-. .....+-+.=.+......+-..+.++++..
T Consensus 52 ~~~~~~i~~ai~~~--------~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~ 121 (845)
T COG1643 52 TAVRDEILKAIEQN--------QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEK 121 (845)
T ss_pred HHHHHHHHHHHHhC--------CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCC
Confidence 35677888888543 59999999999999988776653211 112233333223334567778888888765
Q ss_pred CCC------------------CcccHHHHHHHHH-HHhCCCcEEEEEecCCCCChhh---HHhhcCCCCCCCCCcEEEEe
Q 039283 270 QCT------------------DKDDLNLLQEKLK-KQLSGKKFLLVLDDVWNENYNS---WRALSCPFGAGASGSKIVVT 327 (600)
Q Consensus 270 ~~~------------------~~~~~~~l~~~l~-~~L~~k~~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~IlvT 327 (600)
... ...+...+.+.+. +.+=++=-.||+|.+++-+... ...+...+....+.-||||+
T Consensus 122 ~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 122 LGETVGYSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred cCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 321 1112233333333 2222344589999998653221 11122222222234899999
Q ss_pred ccCh
Q 039283 328 HRNQ 331 (600)
Q Consensus 328 tR~~ 331 (600)
|=.-
T Consensus 202 SATl 205 (845)
T COG1643 202 SATL 205 (845)
T ss_pred eccc
Confidence 8654
No 413
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.14 E-value=0.13 Score=55.99 Aligned_cols=96 Identities=17% Similarity=0.191 Sum_probs=54.9
Q ss_pred cccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHH
Q 039283 186 VYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTV 258 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 258 (600)
+=|..+.++.|.+.+.-+.. ..-....-|.++|++|+|||-||.++.... . .-++++-.+
T Consensus 669 igg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~------~-~~fisvKGP------ 735 (952)
T KOG0735|consen 669 IGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS------N-LRFISVKGP------ 735 (952)
T ss_pred cccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC------C-eeEEEecCH------
Confidence 44555555556665543321 011223458899999999999998887532 1 235666554
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCC
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWN 302 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~ 302 (600)
+++...-+. +.+.....+.+.-.-++|+|.||.+++
T Consensus 736 --ElL~KyIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdS 771 (952)
T KOG0735|consen 736 --ELLSKYIGA------SEQNVRDLFERAQSAKPCILFFDEFDS 771 (952)
T ss_pred --HHHHHHhcc------cHHHHHHHHHHhhccCCeEEEeccccc
Confidence 233332221 223333344444456999999999954
No 414
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.14 E-value=0.044 Score=51.52 Aligned_cols=24 Identities=29% Similarity=0.560 Sum_probs=21.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999988763
No 415
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=94.14 E-value=0.074 Score=49.85 Aligned_cols=42 Identities=26% Similarity=0.304 Sum_probs=30.5
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhh
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..++|.+..+..|.-.... ..-+.|+|++|+|||+||+.+-.
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 3578888777777666543 25799999999999999998854
No 416
>PRK13947 shikimate kinase; Provisional
Probab=94.13 E-value=0.036 Score=50.83 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=19.3
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 417
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=94.11 E-value=0.094 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.7
Q ss_pred eEEEEEccCCChHHHHHHHHh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVN 232 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~ 232 (600)
+++.|+|+.|.|||||.+.+.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 689999999999999999887
No 418
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.12 Score=49.19 Aligned_cols=50 Identities=28% Similarity=0.217 Sum_probs=35.8
Q ss_pred ccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 185 EVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+=|-+-.++++.+...-+-. -+-+.++-|.++|++|+|||.||++|.++
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 345677777777776532210 12356778899999999999999999985
No 419
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.06 E-value=0.041 Score=52.34 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-.+++|+|.+|+|||||++.+.-
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhc
Confidence 35899999999999999998864
No 420
>PRK14530 adenylate kinase; Provisional
Probab=94.06 E-value=0.041 Score=52.70 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.|.|+|++|+||||+|+.+...
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999988763
No 421
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.05 E-value=0.22 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-.+++|.|+.|.|||||.+.+..
T Consensus 35 Ge~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 35 GELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred CcEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999998876
No 422
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=94.05 E-value=0.062 Score=48.46 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+..+|.++|.+|.||||+|..+...
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~ 46 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEK 46 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998873
No 423
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=94.04 E-value=0.13 Score=48.25 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.7
Q ss_pred EEEEEccCCChHHHHHHHHhhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
+|+|.|+.|+||||+++.+.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998754
No 424
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.13 Score=46.51 Aligned_cols=118 Identities=16% Similarity=0.101 Sum_probs=59.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
.+++|+|..|.|||||++.+.... ......+++........ ........+.... +-..-+...-.+...+...
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~---~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~--qlS~G~~~r~~l~~~l~~~ 98 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL---KPTSGEILIDGKDIAKL--PLEELRRRIGYVP--QLSGGQRQRVALARALLLN 98 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC---CCCccEEEECCEEcccC--CHHHHHhceEEEe--eCCHHHHHHHHHHHHHhcC
Confidence 589999999999999999997632 22344444432111110 0011111111110 0111122222345555566
Q ss_pred cEEEEEecCCC-CChhhHHhhcCCCCCC-CCCcEEEEeccChHHHhh
Q 039283 292 KFLLVLDDVWN-ENYNSWRALSCPFGAG-ASGSKIVVTHRNQGVAET 336 (600)
Q Consensus 292 ~~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~gs~IlvTtR~~~v~~~ 336 (600)
+-++++|+.-. .|......+...+... ..+..++++|.+......
T Consensus 99 ~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 99 PDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL 145 (157)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 88999999842 2333333333333221 124678888877665544
No 425
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=94.03 E-value=0.23 Score=53.71 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=70.1
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.++|......++.+.+.... +....+.|.|..|+||+++|+.+..... ......+-+++... ..+.+...+
T Consensus 135 ~lig~s~~~~~v~~~i~~~a----~~~~~vli~Ge~GtGK~~~A~~ih~~~~--~~~~~~~~~~c~~~--~~~~~~~~l- 205 (463)
T TIGR01818 135 ELIGEAPAMQEVFRAIGRLS----RSDITVLINGESGTGKELVARALHRHSP--RANGPFIALNMAAI--PKDLIESEL- 205 (463)
T ss_pred ceeecCHHHHHHHHHHHHHh----CcCCeEEEECCCCCCHHHHHHHHHHhCC--CCCCCeEEEeCCCC--CHHHHHHHh-
Confidence 47888777777777664422 2234678999999999999998875321 11122233444332 223333322
Q ss_pred HhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEEEeccCh
Q 039283 265 SIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIVVTHRNQ 331 (600)
Q Consensus 265 ~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~~ 331 (600)
++ ........... ...........-.|+||++..........+...+..+. .+.+||+||...
T Consensus 206 -fg-~~~~~~~~~~~--~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 206 -FG-HEKGAFTGANT--RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred -cC-CCCCCCCCccc--CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 11 11100000000 00000111224458999998877666666665544321 245888888654
No 426
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=94.03 E-value=0.033 Score=50.67 Aligned_cols=20 Identities=30% Similarity=0.586 Sum_probs=17.9
Q ss_pred EEEEccCCChHHHHHHHHhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~ 233 (600)
+.|+|++|+||||+|+.+..
T Consensus 1 i~l~G~~GsGKSTla~~l~~ 20 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAH 20 (163)
T ss_pred CEEECCCCCCHHHHHHHHHH
Confidence 46899999999999998876
No 427
>PRK13949 shikimate kinase; Provisional
Probab=94.03 E-value=0.041 Score=50.48 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-|.|+|++|+||||+++.+...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988863
No 428
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.03 E-value=0.22 Score=52.38 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=48.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcC-------CCCCcccHH----
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASD-------QCTDKDDLN---- 278 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~-------~~~~~~~~~---- 278 (600)
.-..++|.|..|+|||||++.++..... ....+...-.+.....+.+...+..-+.. ....+....
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~---~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra~ 231 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA---DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAA 231 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC---CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHHH
Confidence 4468899999999999999988764321 11223222223345666666555442211 010111111
Q ss_pred HHHHHHHHHh--CCCcEEEEEecCC
Q 039283 279 LLQEKLKKQL--SGKKFLLVLDDVW 301 (600)
Q Consensus 279 ~l~~~l~~~L--~~k~~LlVlDdv~ 301 (600)
.....+.+++ ++++.||++||+-
T Consensus 232 ~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 232 KLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHcCCcEEEEecchH
Confidence 1112233333 4799999999983
No 429
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.02 E-value=0.16 Score=50.12 Aligned_cols=56 Identities=14% Similarity=0.130 Sum_probs=39.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASD 269 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~ 269 (600)
-.++.|-|.+|+|||++|..+..+..... -..++|++.. .+..++...++......
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~-~~~vly~SlE--m~~~~l~~R~la~~s~v 74 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNG-GYPVLYFSLE--MSEEELAARLLARLSGV 74 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTT-SSEEEEEESS--S-HHHHHHHHHHHHHTS
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhc-CCeEEEEcCC--CCHHHHHHHHHHHhhcc
Confidence 35899999999999999998887654332 2556666654 45677887777776543
No 430
>PRK14527 adenylate kinase; Provisional
Probab=94.01 E-value=0.049 Score=51.06 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=21.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...++.|+|++|+||||+|+.+...
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999988753
No 431
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.01 E-value=0.12 Score=51.22 Aligned_cols=81 Identities=12% Similarity=0.175 Sum_probs=44.6
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
.++.|.|+.|+||||++..+.... .. ....+ +.+.++.... +.. ..++..... .. ....+.++..|+..
T Consensus 81 GlilisG~tGSGKTT~l~all~~i--~~-~~~~i-itiEdp~E~~--~~~-~~q~~v~~~-~~---~~~~~~l~~~lR~~ 149 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSEL--NT-PEKNI-ITVEDPVEYQ--IPG-INQVQVNEK-AG---LTFARGLRAILRQD 149 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhh--CC-CCCeE-EEECCCceec--CCC-ceEEEeCCc-CC---cCHHHHHHHHhccC
Confidence 589999999999999998776532 11 11112 2333222110 000 011111110 11 13456677778888
Q ss_pred cEEEEEecCCCC
Q 039283 292 KFLLVLDDVWNE 303 (600)
Q Consensus 292 ~~LlVlDdv~~~ 303 (600)
+=.|+++++.+.
T Consensus 150 PD~i~vgEiR~~ 161 (264)
T cd01129 150 PDIIMVGEIRDA 161 (264)
T ss_pred CCEEEeccCCCH
Confidence 889999999543
No 432
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=93.99 E-value=0.051 Score=48.47 Aligned_cols=23 Identities=48% Similarity=0.632 Sum_probs=20.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+++|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 57999999999999999977654
No 433
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=93.98 E-value=0.14 Score=48.00 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=21.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
..|+|.|..|+||||+++.+.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l 27 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLL 27 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998754
No 434
>PLN02796 D-glycerate 3-kinase
Probab=93.97 E-value=0.4 Score=48.78 Aligned_cols=25 Identities=32% Similarity=0.214 Sum_probs=22.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+-+|+|.|..|+|||||++.+...
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~l 123 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYL 123 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 5678999999999999999988864
No 435
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.96 E-value=0.042 Score=49.33 Aligned_cols=20 Identities=40% Similarity=0.712 Sum_probs=18.5
Q ss_pred EEEEccCCChHHHHHHHHhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~ 233 (600)
|.|+|++|+||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999876
No 436
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.96 E-value=0.1 Score=49.35 Aligned_cols=42 Identities=31% Similarity=0.356 Sum_probs=26.4
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCH
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDV 255 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 255 (600)
.|+|+|-||+||||+|..+.....-++-| .+.-|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~-~VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGY-NVLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCh
Confidence 58999999999999998754432222213 3344555555543
No 437
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.95 E-value=0.5 Score=44.72 Aligned_cols=25 Identities=36% Similarity=0.363 Sum_probs=21.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
-.+-+|.||.|.||||||..+.-++
T Consensus 30 GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 30 GEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3588999999999999999886654
No 438
>PRK13975 thymidylate kinase; Provisional
Probab=93.93 E-value=0.047 Score=51.35 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.3
Q ss_pred eEEEEEccCCChHHHHHHHHhhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
.+|+|.|+.|+||||+++.+....
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l 26 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKL 26 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 489999999999999999998743
No 439
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=93.92 E-value=0.18 Score=52.92 Aligned_cols=87 Identities=22% Similarity=0.271 Sum_probs=46.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhhcCC------CCCcccHHHH--
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE-DFDVFTVSKSILNSIASDQ------CTDKDDLNLL-- 280 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~il~~l~~~~------~~~~~~~~~l-- 280 (600)
.-..++|.|..|+|||||++.+..... . +..+.+.++. .-.+.++....+..-+... ..+.......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD---A-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC---C-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999988876322 1 2222232333 3234444444433211110 0011111111
Q ss_pred ---HHHHHHHh--CCCcEEEEEecC
Q 039283 281 ---QEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 281 ---~~~l~~~L--~~k~~LlVlDdv 300 (600)
.-.+.+++ +++.+||++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 11233444 579999999998
No 440
>PLN02924 thymidylate kinase
Probab=93.90 E-value=0.26 Score=47.21 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=24.1
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRV 237 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~ 237 (600)
.....|+|.|..|+||||+++.+......
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~ 42 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKG 42 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34568999999999999999999875543
No 441
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=93.89 E-value=0.084 Score=60.19 Aligned_cols=24 Identities=25% Similarity=0.187 Sum_probs=21.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++.|+|+.|.|||||.+.+.-.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHH
Confidence 478999999999999999888653
No 442
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.88 E-value=0.047 Score=52.29 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.9
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..|+|+|++|+|||||.+.+.-
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998864
No 443
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.87 E-value=1.6 Score=42.91 Aligned_cols=95 Identities=21% Similarity=0.280 Sum_probs=56.9
Q ss_pred ccccccchHHHHHHHHhcCCC------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDL------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTV 258 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~ 258 (600)
.+-|-+...+.|.+.+.-+-. ......+-|.++|++|.||+.||++|..... . -|+++|..
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn--S-----TFFSvSSS------ 200 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN--S-----TFFSVSSS------ 200 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC--C-----ceEEeehH------
Confidence 356777777777776532110 1223467899999999999999999987321 2 23445432
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHh-CCCcEEEEEecCC
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVW 301 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVlDdv~ 301 (600)
++.....+. .+.++..|.+.- .+|+-+|.+|.++
T Consensus 201 --DLvSKWmGE-------SEkLVknLFemARe~kPSIIFiDEiD 235 (439)
T KOG0739|consen 201 --DLVSKWMGE-------SEKLVKNLFEMARENKPSIIFIDEID 235 (439)
T ss_pred --HHHHHHhcc-------HHHHHHHHHHHHHhcCCcEEEeehhh
Confidence 222222111 133444444333 3689999999984
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.86 E-value=0.063 Score=50.16 Aligned_cols=35 Identities=29% Similarity=0.199 Sum_probs=26.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEE
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTC 248 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~ 248 (600)
-.+++|.|++|+|||||.+.+.. ....=...+|+.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEEC
Confidence 35999999999999999988864 233334567764
No 445
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=93.86 E-value=0.087 Score=60.98 Aligned_cols=182 Identities=16% Similarity=0.170 Sum_probs=90.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccC---CceEEEEeCCCC----CHH--HHHHHHHHHhhcCCCCCcccHHHHH
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF---QIKAWTCVSEDF----DVF--TVSKSILNSIASDQCTDKDDLNLLQ 281 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F---~~~~wv~vs~~~----~~~--~~l~~il~~l~~~~~~~~~~~~~l~ 281 (600)
..-+.|+|.+|.||||+.+.+.-... .+.+ +..+++.+.... ... .+..-+...+..... .....
T Consensus 222 ~~~~~Ilg~pGsGKTtfl~~lA~~~~-~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~-----~~~~~ 295 (824)
T COG5635 222 YAKLLILGAPGSGKTTFLQRLALWLA-QRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI-----AKQLI 295 (824)
T ss_pred hhheeeecCCCCCceehHHHHHHHhc-cCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC-----cchhh
Confidence 34789999999999999987765321 1222 233444332110 011 122222222222211 11222
Q ss_pred HHHHHHhCCCcEEEEEecCCCCChhh----HHhhcCCCCCCCCCcEEEEeccChHHHhhcCccceeecCCCCHHHHHHHH
Q 039283 282 EKLKKQLSGKKFLLVLDDVWNENYNS----WRALSCPFGAGASGSKIVVTHRNQGVAETMRAVSTKTLKELSDDDCLRVL 357 (600)
Q Consensus 282 ~~l~~~L~~k~~LlVlDdv~~~~~~~----~~~l~~~l~~~~~gs~IlvTtR~~~v~~~~~~~~~~~l~~L~~~ea~~Lf 357 (600)
....++++..++++.+|.+....... ...+. .+...-+.+.+|+|+|....-....+...+.+..+.++.-....
T Consensus 296 ~~~~e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~-~f~~~~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~ 374 (824)
T COG5635 296 EAHQELLKTGKLLLLLDGLDELEPKNQRALIREIN-KFLQEYPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFI 374 (824)
T ss_pred HHHHHHHhccchhhHhhccchhhhhhHHHHHHHHH-HHhhhccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHH
Confidence 22256778899999999985432211 12222 22223357899999998755544444455566666555444322
Q ss_pred H--------HhhcCCCCCCCChhHHHH---HHHHHHhhcCchhHHHHHHhhhc
Q 039283 358 I--------QHSLGARDFNIPQSLKEV---AEKIVKKCKGLPLAAKTLGGLLR 399 (600)
Q Consensus 358 ~--------~~a~~~~~~~~~~~l~~~---~~~I~~~~~GlPLai~~~~~~L~ 399 (600)
. ...++............+ ...-.+.....|+.+.+.+..-.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~ 427 (824)
T COG5635 375 LYQWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQ 427 (824)
T ss_pred HHHHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhh
Confidence 2 111111110000011111 12233444888999998885544
No 446
>PLN02200 adenylate kinase family protein
Probab=93.81 E-value=0.058 Score=52.30 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=21.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+.+|.|.|++|+||||+|+.+..
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999988875
No 447
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.79 E-value=0.2 Score=49.05 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-hccccCChHHHHHHHHHHHHhhcHHHHHHHHH
Q 039283 33 LKADLIKWKGMLEMIQAVLADA-EDRKTKDKAVKKWLDNLQNLAYDAEDVLDELE 86 (600)
Q Consensus 33 v~~~~~~l~~~l~~i~~~L~~a-e~~~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~ 86 (600)
++.+++-++.+++.+|.||++. ++....-+..+.+..++-..||++|.++|-+.
T Consensus 319 lKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 319 LKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 5789999999999999999986 44333333489999999999999999999763
No 448
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=93.75 E-value=0.039 Score=63.05 Aligned_cols=122 Identities=19% Similarity=0.163 Sum_probs=57.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC--CcccHHHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT--DKDDLNLLQEKLKKQ 287 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~--~~~~~~~l~~~l~~~ 287 (600)
+.+++.|+|+.+.||||+.+.+.-..-. .....+|.+.... ...++..|+..++..... .......-...+...
T Consensus 326 ~~~~~iITGpN~gGKTt~lktigl~~~m---aq~G~~vpa~~~~-~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~I 401 (782)
T PRK00409 326 DKTVLVITGPNTGGKTVTLKTLGLAALM---AKSGLPIPANEPS-EIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRI 401 (782)
T ss_pred CceEEEEECCCCCCcHHHHHHHHHHHHH---HHhCCCcccCCCc-cccccceEEEecCCccchhhchhHHHHHHHHHHHH
Confidence 4578999999999999999888542110 1112222222110 001111111111111100 001111111112222
Q ss_pred hC--CCcEEEEEecCCCC-ChhhHHhh----cCCCCCCCCCcEEEEeccChHHHhhc
Q 039283 288 LS--GKKFLLVLDDVWNE-NYNSWRAL----SCPFGAGASGSKIVVTHRNQGVAETM 337 (600)
Q Consensus 288 L~--~k~~LlVlDdv~~~-~~~~~~~l----~~~l~~~~~gs~IlvTtR~~~v~~~~ 337 (600)
+. ..+-|++||..... ++..-..+ ...+.. .|+.+|+||....+....
T Consensus 402 l~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~--~~~~vIitTH~~el~~~~ 456 (782)
T PRK00409 402 LEKADKNSLVLFDELGAGTDPDEGAALAISILEYLRK--RGAKIIATTHYKELKALM 456 (782)
T ss_pred HHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEECChHHHHHHH
Confidence 22 47789999998532 22222222 222322 478899999998776543
No 449
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.75 E-value=0.048 Score=49.66 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=16.7
Q ss_pred EEEEccCCChHHHHHHHHhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~ 233 (600)
|+|+|..|+|||||++.+..
T Consensus 2 I~i~G~~stGKTTL~~~L~~ 21 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAA 21 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999875
No 450
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.73 E-value=0.28 Score=54.36 Aligned_cols=117 Identities=15% Similarity=0.115 Sum_probs=58.0
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhc-cCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCC--cccHHHHHHHHHHHh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQR-HFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTD--KDDLNLLQEKLKKQL 288 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~--~~~~~~l~~~l~~~L 288 (600)
++..|+|.+|.||||++..+........ .-...+.+.....--..++...+-..+..-.... ..........+.+.|
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 5899999999999999988876432111 1123455544433333333333332221100000 000000112223333
Q ss_pred C------------CCc---EEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 289 S------------GKK---FLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 289 ~------------~k~---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
. +.+ =+||+|.+---+......+...++ +++++|+---..
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~ 302 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRD 302 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchh
Confidence 1 111 289999985555455556666665 467777765444
No 451
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=93.69 E-value=0.11 Score=49.05 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=41.7
Q ss_pred CCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC--CcccHHHHHHHHH
Q 039283 208 DDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT--DKDDLNLLQEKLK 285 (600)
Q Consensus 208 ~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~--~~~~~~~l~~~l~ 285 (600)
...+.++.|.|.+|.||||++..+..... ....+.++...--........+... ...... .......+...+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~----~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG----GGGIVVIDADEFRQFHPDYDELLKA-DPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-----TT-SEEE-GGGGGGGSTTHHHHHHH-HCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc----CCCeEEEehHHHHHhccchhhhhhh-hhhhhHHHHHHHHHHHHHHHH
Confidence 45778999999999999999988865321 3445555532211111111222221 111100 1122333445555
Q ss_pred HHhCCCcEEEEEecCCC
Q 039283 286 KQLSGKKFLLVLDDVWN 302 (600)
Q Consensus 286 ~~L~~k~~LlVlDdv~~ 302 (600)
+..-.+++=+|+|..-.
T Consensus 87 ~~a~~~~~nii~E~tl~ 103 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLS 103 (199)
T ss_dssp HHHHHCT--EEEE--TT
T ss_pred HHHHHcCCCEEEecCCC
Confidence 55556777888898754
No 452
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.69 E-value=0.74 Score=47.75 Aligned_cols=73 Identities=23% Similarity=0.257 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCC---CCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC--CHHHHHHHHHHHhh
Q 039283 193 KEAIVELLLRDDLR---ADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF--DVFTVSKSILNSIA 267 (600)
Q Consensus 193 ~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~--~~~~~l~~il~~l~ 267 (600)
.++|.+.|...... ....+.+|..+|.-|.||||.+..+.+..+- ....+-+...+.+ ...+-++.+.++++
T Consensus 79 ~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 79 YEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 35566766532111 1345789999999999999999887764433 2222322222222 23444555555554
Q ss_pred c
Q 039283 268 S 268 (600)
Q Consensus 268 ~ 268 (600)
.
T Consensus 156 v 156 (451)
T COG0541 156 V 156 (451)
T ss_pred C
Confidence 4
No 453
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.67 E-value=0.14 Score=51.89 Aligned_cols=49 Identities=22% Similarity=0.213 Sum_probs=32.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHH
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 261 (600)
.+++.+.|.|||||||+|....- ........+.-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47899999999999999976443 22233344666666655555555443
No 454
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.67 E-value=0.25 Score=53.23 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=51.5
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEE-EeCCCCCHHHHHHHHHHHhhc----C
Q 039283 195 AIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWT-CVSEDFDVFTVSKSILNSIAS----D 269 (600)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv-~vs~~~~~~~~l~~il~~l~~----~ 269 (600)
+++++|..- +.-.-.+|+|++|+|||||++.+.+... ..+-++.++| -+.+..... ..+-+.+.. .
T Consensus 405 RvIDll~PI-----GkGQR~LIvgpp~aGKTtLL~~IAn~i~-~n~~~~~~ivvLIgERpeEV---tdm~rsVkgeVVas 475 (672)
T PRK12678 405 RVIDLIMPI-----GKGQRGLIVSPPKAGKTTILQNIANAIT-TNNPECHLMVVLVDERPEEV---TDMQRSVKGEVIAS 475 (672)
T ss_pred eeeeeeccc-----ccCCEeEEeCCCCCCHHHHHHHHHHHHh-hcCCCeEEEEEEEeCchhhH---HHHHHhccceEEEE
Confidence 355665443 3446789999999999999999887432 2233444333 344433211 222333311 1
Q ss_pred CCCCcccHH----HHHHHHHHHh--CCCcEEEEEecC
Q 039283 270 QCTDKDDLN----LLQEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 270 ~~~~~~~~~----~l~~~l~~~L--~~k~~LlVlDdv 300 (600)
......... .+.-.+.+++ .++.+||++|++
T Consensus 476 T~D~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 476 TFDRPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 111111111 1112233344 589999999998
No 455
>PRK14529 adenylate kinase; Provisional
Probab=93.67 E-value=0.2 Score=47.93 Aligned_cols=22 Identities=41% Similarity=0.471 Sum_probs=19.3
Q ss_pred EEEEccCCChHHHHHHHHhhhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~~ 235 (600)
|.|.|++|+||||+++.+....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~ 24 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKY 24 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999887643
No 456
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=93.64 E-value=0.4 Score=48.65 Aligned_cols=85 Identities=20% Similarity=0.261 Sum_probs=46.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhhcC-------CCCCcccHHH---
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE-DFDVFTVSKSILNSIASD-------QCTDKDDLNL--- 279 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~il~~l~~~-------~~~~~~~~~~--- 279 (600)
-..++|.|..|+|||||.+.+..... -+..+..-++. .-++.++....+..-... .. +......
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~-d~~~~~r~~~ 143 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATS-DESPLLRVKA 143 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCC-CCCHHHHHHH
Confidence 35789999999999999998876322 22333344443 334555555544432111 01 1111111
Q ss_pred --HHHHHHHHh--CCCcEEEEEecC
Q 039283 280 --LQEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 280 --l~~~l~~~L--~~k~~LlVlDdv 300 (600)
..-.+.+++ +++.+||++||+
T Consensus 144 ~~~a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 144 AYTATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHHHcCCCeEEEeccc
Confidence 111222333 589999999998
No 457
>PRK08149 ATP synthase SpaL; Validated
Probab=93.61 E-value=0.19 Score=52.81 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=48.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhhcCC-----CC-CcccHHH---
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED-FDVFTVSKSILNSIASDQ-----CT-DKDDLNL--- 279 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~l~~il~~l~~~~-----~~-~~~~~~~--- 279 (600)
.-..++|.|.+|+|||||++.++.... -+..+...+... -++.++..+.+....... .. +......
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346899999999999999998876321 223233333332 245555555555322110 00 1111111
Q ss_pred --HHHHHHHHh--CCCcEEEEEecC
Q 039283 280 --LQEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 280 --l~~~l~~~L--~~k~~LlVlDdv 300 (600)
....+.+++ +++++||++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 112233333 589999999999
No 458
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.59 E-value=0.062 Score=49.44 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..|.|+|+.|+|||||++.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46999999999999999998863
No 459
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.54 E-value=0.47 Score=57.86 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=22.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++-|.++|++|+|||.||++++.+
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~e 1653 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATN 1653 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHh
Confidence 4567899999999999999999874
No 460
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=93.53 E-value=0.16 Score=51.82 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhh
Q 039283 194 EAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDR 236 (600)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~ 236 (600)
..|.+.+... .++..+|+|.|++|+|||||+..+.....
T Consensus 43 ~~l~~~~~~~----~~~~~~igi~G~~GaGKSTl~~~l~~~l~ 81 (332)
T PRK09435 43 QELLDALLPH----TGNALRIGITGVPGVGKSTFIEALGMHLI 81 (332)
T ss_pred HHHHHHHhhc----CCCcEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3455555332 24678999999999999999998876443
No 461
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=93.53 E-value=0.11 Score=52.43 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=26.3
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCH
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDV 255 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 255 (600)
+++.+.|-||+||||+|....-.... .-..+.-++.....++
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~--~G~rtLlvS~Dpa~~L 43 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALAR--RGKRTLLVSTDPAHSL 43 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHH--TTS-EEEEESSTTTHH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhh--CCCCeeEeecCCCccH
Confidence 58999999999999999766543222 2233444554443333
No 462
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=93.52 E-value=0.22 Score=55.00 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
++..|.|.+|.||||++..+...
T Consensus 161 ~~~vitGgpGTGKTt~v~~ll~~ 183 (586)
T TIGR01447 161 NFSLITGGPGTGKTTTVARLLLA 183 (586)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999998887653
No 463
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.52 E-value=0.06 Score=47.28 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+++|+|+.|+|||||.+.+...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 58999999999999999988763
No 464
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.51 E-value=0.079 Score=39.24 Aligned_cols=21 Identities=38% Similarity=0.571 Sum_probs=18.5
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+..|+|+.|+|||||..++..
T Consensus 25 ~tli~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999977654
No 465
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=93.50 E-value=0.25 Score=52.21 Aligned_cols=89 Identities=16% Similarity=0.162 Sum_probs=53.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhhcC-------CCCCcccHHH--
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD-VFTVSKSILNSIASD-------QCTDKDDLNL-- 279 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~il~~l~~~-------~~~~~~~~~~-- 279 (600)
.-+-++|.|.+|+|||+|+..+..+.. +.+-+.++++-+++... ..+++..+...-... .. +......
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts-~~~~~~r~~ 214 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQM-NEPPGARFR 214 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCC-CCCHHHHHH
Confidence 446899999999999999998876533 22346777887776653 445555544321110 00 1111111
Q ss_pred ---HHHHHHHHh---CCCcEEEEEecC
Q 039283 280 ---LQEKLKKQL---SGKKFLLVLDDV 300 (600)
Q Consensus 280 ---l~~~l~~~L---~~k~~LlVlDdv 300 (600)
..-.+.+++ +++++||++||+
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecCh
Confidence 112344554 468999999999
No 466
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=93.49 E-value=0.47 Score=54.18 Aligned_cols=105 Identities=14% Similarity=0.170 Sum_probs=52.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHH--hC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQ--LS 289 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~--L~ 289 (600)
+++.|.|.+|+||||+++.+....... ...+....... .. ...+-+..+. .......+...+... .-
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~---g~~V~~~ApTg-~A---a~~L~~~~g~----~a~Ti~~~~~~~~~~~~~~ 437 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAA---GYRVIGAALSG-KA---AEGLQAESGI----ESRTLASLEYAWANGRDLL 437 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhC---CCeEEEEeCcH-HH---HHHHHhccCC----ceeeHHHHHhhhccCcccC
Confidence 488999999999999999887643221 12233322211 01 1111111111 222333321111110 01
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEecc
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHR 329 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR 329 (600)
.+.-|||+|++--.+......+..... ..|++||+.-=
T Consensus 438 ~~~~llIvDEasMv~~~~~~~Ll~~~~--~~~~kliLVGD 475 (744)
T TIGR02768 438 SDKDVLVIDEAGMVGSRQMARVLKEAE--EAGAKVVLVGD 475 (744)
T ss_pred CCCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEECC
Confidence 245699999986555444555443222 25788877663
No 467
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.48 E-value=0.37 Score=50.78 Aligned_cols=87 Identities=20% Similarity=0.224 Sum_probs=48.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhhcCC------CCCcccHHH---
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD-VFTVSKSILNSIASDQ------CTDKDDLNL--- 279 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~il~~l~~~~------~~~~~~~~~--- 279 (600)
.-..++|.|..|+|||||++.+..... .+..+.+-+++... ..++....+..-+... ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346889999999999999998886322 23445555655443 3344444443211110 001111111
Q ss_pred --HHHHHHHHh--CCCcEEEEEecC
Q 039283 280 --LQEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 280 --l~~~l~~~L--~~k~~LlVlDdv 300 (600)
..-.+.+++ +++.+||++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 111233444 589999999999
No 468
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.45 E-value=0.068 Score=50.85 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.4
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++++|+++|..|+|||||...+...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999988763
No 469
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=93.45 E-value=0.45 Score=48.35 Aligned_cols=49 Identities=22% Similarity=0.207 Sum_probs=34.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC-HHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD-VFTVSKSI 262 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~i 262 (600)
.-+.++|.|..|+|||+|++++.+.. +-+.++++-+++..+ ..+++.++
T Consensus 156 kGqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 156 KGGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 34589999999999999999988742 335677787776543 44444443
No 470
>PRK15115 response regulator GlrR; Provisional
Probab=93.44 E-value=0.16 Score=54.58 Aligned_cols=134 Identities=14% Similarity=-0.004 Sum_probs=67.7
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.++|....+.++.+...... .....|.|.|.+|+|||++|+.+...... .-...+.+++..- ..+.+...
T Consensus 135 ~lig~s~~~~~~~~~~~~~a----~~~~~vli~Ge~GtGk~~lA~~ih~~s~r--~~~~f~~i~c~~~--~~~~~~~~-- 204 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVA----QSDVSVLINGQSGTGKEILAQAIHNASPR--ASKPFIAINCGAL--PEQLLESE-- 204 (444)
T ss_pred cccccCHHHHHHHHHHHhhc----cCCCeEEEEcCCcchHHHHHHHHHHhcCC--CCCCeEEEeCCCC--CHHHHHHH--
Confidence 47788777777766553322 12246789999999999999988763211 1112233443332 12222221
Q ss_pred HhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEEEeccCh
Q 039283 265 SIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIVVTHRNQ 331 (600)
Q Consensus 265 ~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~~ 331 (600)
+.+..............-+ ......-.|+||++..........+...+..+. ...+||.||..+
T Consensus 205 -lfg~~~~~~~~~~~~~~g~--~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~ 279 (444)
T PRK15115 205 -LFGHARGAFTGAVSNREGL--FQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRD 279 (444)
T ss_pred -hcCCCcCCCCCCccCCCCc--EEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCC
Confidence 1111100000000000000 001223479999998777666666655543321 245888888654
No 471
>PRK06936 type III secretion system ATPase; Provisional
Probab=93.41 E-value=0.22 Score=52.47 Aligned_cols=87 Identities=20% Similarity=0.248 Sum_probs=49.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC-HHHHHHHHHHHhhcCC------CCCcccHHHH--
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD-VFTVSKSILNSIASDQ------CTDKDDLNLL-- 280 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~il~~l~~~~------~~~~~~~~~l-- 280 (600)
+-..++|.|..|+|||||.+.+++... -+.++.+-+++... ..++....+..-+... ..+.......
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 346899999999999999999987432 24566666766543 3344433332211100 0011111111
Q ss_pred ---HHHHHHHh--CCCcEEEEEecC
Q 039283 281 ---QEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 281 ---~~~l~~~L--~~k~~LlVlDdv 300 (600)
.-.+.+++ +++++||++||+
T Consensus 237 ~~~a~tiAEyfrd~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRDQGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 11233333 589999999999
No 472
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=93.41 E-value=0.085 Score=54.03 Aligned_cols=46 Identities=24% Similarity=0.237 Sum_probs=36.4
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-+.+||-++-+..|...+.++ ...-|.|.|..|+||||+|+.++.-
T Consensus 16 f~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred HHHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 346899998888887776443 4456779999999999999998763
No 473
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=93.41 E-value=0.5 Score=53.73 Aligned_cols=106 Identities=13% Similarity=0.049 Sum_probs=56.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH-----H
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLK-----K 286 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~-----~ 286 (600)
+++.|.|.+|+||||+++.+......... ...+++.....--.. .+.+..+. ...+...+..... .
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~-~~~v~l~ApTg~AA~----~L~e~~g~----~a~Tih~lL~~~~~~~~~~ 409 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGG-LLPVGLAAPTGRAAK----RLGEVTGL----TASTIHRLLGYGPDTFRHN 409 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCC-CceEEEEeCchHHHH----HHHHhcCC----ccccHHHHhhccCCccchh
Confidence 48999999999999999988774432211 134565544322222 22222111 1111111111000 0
Q ss_pred Hh--CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEecc
Q 039283 287 QL--SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHR 329 (600)
Q Consensus 287 ~L--~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR 329 (600)
.. ....-+||+|.+.--+......+...++ .|+++|+.--
T Consensus 410 ~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilvGD 451 (720)
T TIGR01448 410 HLEDPIDCDLLIVDESSMMDTWLALSLLAALP---DHARLLLVGD 451 (720)
T ss_pred hhhccccCCEEEEeccccCCHHHHHHHHHhCC---CCCEEEEECc
Confidence 00 1234599999996666555666666554 4677776553
No 474
>PRK05973 replicative DNA helicase; Provisional
Probab=93.39 E-value=0.23 Score=47.97 Aligned_cols=49 Identities=14% Similarity=0.074 Sum_probs=33.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~i 262 (600)
.-.++.|.|.+|+|||+++.++..... ..-..+++++.... ..++...+
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a--~~Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAM--KSGRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEEeCC--HHHHHHHH
Confidence 346899999999999999988875432 22345667766554 44444444
No 475
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.38 E-value=0.82 Score=49.88 Aligned_cols=182 Identities=17% Similarity=0.181 Sum_probs=90.8
Q ss_pred CCccccccchHH---HHHHHHhcCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 183 EDEVYGREKDKE---AIVELLLRDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 183 ~~~~vGR~~e~~---~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
-.+.-|.++.++ ++++.|.++.. -+..-++-|.++|++|.|||.||+++.....+ .| .+.|..
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~V--PF-----f~iSGS---- 217 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGV--PF-----FSISGS---- 217 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCC--Cc-----eeccch----
Confidence 345778876554 55566654431 01234567899999999999999999874332 22 222221
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCC----------ChhhHHh----hcCCCCCCC--C
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE----------NYNSWRA----LSCPFGAGA--S 320 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~----------~~~~~~~----l~~~l~~~~--~ 320 (600)
+.++.+- ........+...+..+.-+++|++|.++.- ...++++ ++.-..... .
T Consensus 218 ----~FVemfV------GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 218 ----DFVEMFV------GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred ----hhhhhhc------CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 1111111 111223344555566677899999988431 1123333 332222222 3
Q ss_pred CcEEEEeccChHHHhh--cC---ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhH
Q 039283 321 GSKIVVTHRNQGVAET--MR---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLA 390 (600)
Q Consensus 321 gs~IlvTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLa 390 (600)
|..|+..|..++|... +. -...+.++..+...-.++++-++-...- ...-.+. .|++.+-|.-.|
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-~~~Vdl~----~iAr~tpGfsGA 357 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-AEDVDLK----KIARGTPGFSGA 357 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-CCcCCHH----HHhhhCCCcccc
Confidence 4444444433333321 11 2245656666656666666655432211 1111222 266677666543
No 476
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=93.36 E-value=0.066 Score=49.46 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+++|+|++|+|||||++.+...
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~ 26 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAAL 26 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 48899999999999999998863
No 477
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.36 E-value=0.21 Score=54.96 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=21.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+-..++|+|+.|+|||||++.+..
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g 383 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTG 383 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 446899999999999999998865
No 478
>PRK08006 replicative DNA helicase; Provisional
Probab=93.35 E-value=0.62 Score=50.11 Aligned_cols=55 Identities=13% Similarity=0.084 Sum_probs=37.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIA 267 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~ 267 (600)
.-.++.|-|.+|+|||++|..+..+....... .+++++ -..+..++...++....
T Consensus 223 ~G~LiiIaarPgmGKTafalnia~~~a~~~g~-~V~~fS--lEM~~~ql~~Rlla~~~ 277 (471)
T PRK08006 223 PSDLIIVAARPSMGKTTFAMNLCENAAMLQDK-PVLIFS--LEMPGEQIMMRMLASLS 277 (471)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCC-eEEEEe--ccCCHHHHHHHHHHHhc
Confidence 44689999999999999998887654322222 233443 34567788888887654
No 479
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=93.34 E-value=0.33 Score=44.07 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.6
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
++..|+|+.|.|||++.+.+..
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999988754
No 480
>PRK06761 hypothetical protein; Provisional
Probab=93.33 E-value=0.12 Score=51.21 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
+++.|.|++|+||||+++.+....
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L 27 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDIL 27 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 589999999999999999998743
No 481
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=93.32 E-value=0.14 Score=55.02 Aligned_cols=133 Identities=14% Similarity=0.030 Sum_probs=69.6
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCC-ceEEEEeCCCCCHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ-IKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l~~il 263 (600)
.++|....++++...+.... ... ..+.|+|..|+||+++|+.+.... .+.. ..+.+++..-. .+.+..
T Consensus 140 ~lig~s~~~~~l~~~i~~~a---~~~-~~vli~Ge~GtGK~~lA~~ih~~s---~~~~~~~v~v~c~~~~--~~~~~~-- 208 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIA---PSD-ITVLLLGESGTGKEVLARALHQLS---DRKDKRFVAINCAAIP--ENLLES-- 208 (445)
T ss_pred ceeecCHHHHHHHHHHHHHh---CCC-CCEEEECCCCcCHHHHHHHHHHhC---CcCCCCeEEEECCCCC--hHHHHH--
Confidence 47888888888877775422 122 346699999999999999887531 1111 22345544432 222222
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEEEeccCh
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIVVTHRNQ 331 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR~~ 331 (600)
.+.+.......... .......-....-.|+||++..........+...+..+. ...+||.||...
T Consensus 209 -~lfg~~~~~~~~~~--~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 209 -ELFGYEKGAFTGAV--KQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQD 284 (445)
T ss_pred -HhcCCCCCCcCCCc--cCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCC
Confidence 22221110000000 000000001234468999998776666666655443221 246888888654
No 482
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=93.31 E-value=0.46 Score=52.88 Aligned_cols=24 Identities=38% Similarity=0.517 Sum_probs=21.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.-..++|+|+.|.|||||++.+..
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g 388 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTR 388 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998865
No 483
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=93.30 E-value=0.13 Score=52.24 Aligned_cols=111 Identities=12% Similarity=0.082 Sum_probs=54.0
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSG 290 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~ 290 (600)
...+.|+|+.|+|||||++.+..... .. ...+.+.-.....+.. ..... +...........-...+.+...|+.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~--~~-~~iv~ied~~El~~~~--~~~~~-l~~~~~~~~~~~~~~~~~l~~~Lr~ 217 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP--KD-ERIITIEDTREIFLPH--PNYVH-LFYSKGGQGLAKVTPKDLLQSCLRM 217 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC--cc-ccEEEEcCccccCCCC--CCEEE-EEecCCCCCcCccCHHHHHHHHhcC
Confidence 36899999999999999998875321 11 1222221111111110 00000 0000000111112234556667777
Q ss_pred CcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH
Q 039283 291 KKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG 332 (600)
Q Consensus 291 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 332 (600)
.+=.|++|.+.. .+.+. +...+..+..| ++.|+....
T Consensus 218 ~pd~ii~gE~r~--~e~~~-~l~a~~~g~~~--~i~T~Ha~~ 254 (308)
T TIGR02788 218 RPDRIILGELRG--DEAFD-FIRAVNTGHPG--SITTLHAGS 254 (308)
T ss_pred CCCeEEEeccCC--HHHHH-HHHHHhcCCCe--EEEEEeCCC
Confidence 888899999954 34443 33333333222 456665443
No 484
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=93.28 E-value=1.3 Score=43.30 Aligned_cols=58 Identities=12% Similarity=0.054 Sum_probs=40.4
Q ss_pred CcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHH-hhcCccceeecCCC
Q 039283 291 KKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVA-ETMRAVSTKTLKEL 348 (600)
Q Consensus 291 k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~-~~~~~~~~~~l~~L 348 (600)
++=++|+|+++..+...+..++..+....+++.+|++|.+. .+. +..+....+.+.+.
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~ 147 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK 147 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence 45577999998888889999999888777788888777754 222 22223345555554
No 485
>PRK14532 adenylate kinase; Provisional
Probab=93.26 E-value=0.063 Score=50.14 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=18.4
Q ss_pred EEEEccCCChHHHHHHHHhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~ 233 (600)
|.|.|++|+||||+|+.+..
T Consensus 3 i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78899999999999998875
No 486
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=93.26 E-value=0.24 Score=52.18 Aligned_cols=86 Identities=20% Similarity=0.246 Sum_probs=48.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhhcC-------CCCCcccHHHH-
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF-DVFTVSKSILNSIASD-------QCTDKDDLNLL- 280 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~l~~il~~l~~~-------~~~~~~~~~~l- 280 (600)
.-..++|.|..|+|||||++.+.... +.+..++..+++.. .+.+.+......=... .. ........
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~ts-d~p~~~r~~ 228 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATS-DRPALERVR 228 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECC-CCCHHHHHH
Confidence 44689999999999999998887632 23445555555433 3444444443210000 00 11111111
Q ss_pred ----HHHHHHHh--CCCcEEEEEecC
Q 039283 281 ----QEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 281 ----~~~l~~~L--~~k~~LlVlDdv 300 (600)
.-.+.+++ +++++||++||+
T Consensus 229 a~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 229 ALFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 11233444 488999999999
No 487
>PRK08356 hypothetical protein; Provisional
Probab=93.24 E-value=0.081 Score=49.79 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=18.7
Q ss_pred eEEEEEccCCChHHHHHHHH
Q 039283 212 SVVSIKGLGGVGKTTLAQLV 231 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v 231 (600)
.+|+|+|++|+||||+|+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l 25 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFF 25 (195)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 57899999999999999888
No 488
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=93.23 E-value=0.7 Score=49.20 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=38.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIA 267 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~ 267 (600)
.-.++.|.|.+|+|||++|..+..+...... ..++|++.. .+..++...++....
T Consensus 193 ~g~liviag~pg~GKT~~al~ia~~~a~~~g-~~v~~fSlE--m~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 193 KGDLIVIGARPSMGKTTLALNIAENVALREG-KPVLFFSLE--MSAEQLGERLLASKS 247 (421)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHhCC-CcEEEEECC--CCHHHHHHHHHHHHc
Confidence 3458999999999999999888754332222 345566543 467778777776544
No 489
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.23 E-value=0.065 Score=50.22 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.9
Q ss_pred EEEEccCCChHHHHHHHHhhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~ 234 (600)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988763
No 490
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.22 E-value=0.2 Score=49.27 Aligned_cols=85 Identities=21% Similarity=0.263 Sum_probs=46.8
Q ss_pred CceEEEEEccCCChHHHHH-HHHhhhhhhhccCCce-EEEEeCCCC-CHHHHHHHHHHHhhcC-------CCCCcccH--
Q 039283 210 GFSVVSIKGLGGVGKTTLA-QLVNKDDRVQRHFQIK-AWTCVSEDF-DVFTVSKSILNSIASD-------QCTDKDDL-- 277 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA-~~v~~~~~~~~~F~~~-~wv~vs~~~-~~~~~l~~il~~l~~~-------~~~~~~~~-- 277 (600)
+-+-++|.|.+|+|||+|| ..+.+. ..-+.. +++-+++.. ...++...+...-... ...+....
T Consensus 68 rGQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~ 143 (274)
T cd01132 68 RGQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQY 143 (274)
T ss_pred cCCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHH
Confidence 3467899999999999996 555442 123444 556666554 3445555554321110 00011111
Q ss_pred ------HHHHHHHHHHhCCCcEEEEEecC
Q 039283 278 ------NLLQEKLKKQLSGKKFLLVLDDV 300 (600)
Q Consensus 278 ------~~l~~~l~~~L~~k~~LlVlDdv 300 (600)
-...+.++. +++.+||++||+
T Consensus 144 ~a~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 144 LAPYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 112223333 479999999999
No 491
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.22 E-value=0.1 Score=47.03 Aligned_cols=34 Identities=29% Similarity=0.399 Sum_probs=24.6
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhccCCceEEE
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWT 247 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv 247 (600)
+++|+|+.|+|||||+..+....+. ..+...+.-
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~-~G~~V~viK 34 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKA-RGYRVATIK 34 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEe
Confidence 5789999999999999999875432 234444443
No 492
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=93.22 E-value=0.45 Score=52.06 Aligned_cols=99 Identities=18% Similarity=0.106 Sum_probs=56.8
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCC--
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQ-- 270 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~-- 270 (600)
...|.+.|... =..-.++.|.|.+|+|||+|+.++.... ...-..++|++.... +.++...+ ..++...
T Consensus 259 i~~lD~~l~GG----~~~g~~~li~G~~G~GKT~l~~~~~~~~--~~~g~~~~yis~e~~--~~~i~~~~-~~~g~~~~~ 329 (509)
T PRK09302 259 VPDLDEMLGGG----FFRGSIILVSGATGTGKTLLASKFAEAA--CRRGERCLLFAFEES--RAQLIRNA-RSWGIDLEK 329 (509)
T ss_pred cHHHHHhhcCC----CCCCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecCC--HHHHHHHH-HHcCCChHH
Confidence 34455555322 1345688999999999999998887643 234467888887654 44444333 3333110
Q ss_pred ------------CCCcccHHHHHHHHHHHhCC-CcEEEEEecC
Q 039283 271 ------------CTDKDDLNLLQEKLKKQLSG-KKFLLVLDDV 300 (600)
Q Consensus 271 ------------~~~~~~~~~l~~~l~~~L~~-k~~LlVlDdv 300 (600)
.......+.....+.+.+.. +.-++|+|.+
T Consensus 330 ~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDsl 372 (509)
T PRK09302 330 MEEKGLLKIICARPESYGLEDHLIIIKREIEEFKPSRVAIDPL 372 (509)
T ss_pred HhhcCCceeecCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 00112334445555555533 4557888887
No 493
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=93.20 E-value=0.059 Score=52.33 Aligned_cols=32 Identities=19% Similarity=0.123 Sum_probs=20.8
Q ss_pred EEccCCChHHHHHHHHhhhhhhhccCCceEEEEe
Q 039283 216 IKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCV 249 (600)
Q Consensus 216 I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~v 249 (600)
|+||+|+||||+++.+.+.....+ ...+-|++
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~--~~~~~vNL 32 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNG--RDVYIVNL 32 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT---S-EEEEE-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcc--CCceEEEc
Confidence 689999999999999887543322 23444554
No 494
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=93.19 E-value=0.084 Score=53.89 Aligned_cols=49 Identities=24% Similarity=0.260 Sum_probs=32.5
Q ss_pred cccccchHHHHHHHHhcCCC-----------CCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 186 VYGREKDKEAIVELLLRDDL-----------RADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~-----------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..|-..+...|.+.+..... -....-.++.|+|.+|.||||+.+.+...
T Consensus 373 ~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~ 432 (593)
T COG2401 373 IKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGA 432 (593)
T ss_pred cccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHH
Confidence 45556677777766632110 01123458999999999999999888653
No 495
>PRK05922 type III secretion system ATPase; Validated
Probab=93.19 E-value=0.3 Score=51.44 Aligned_cols=86 Identities=14% Similarity=0.217 Sum_probs=46.9
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhhcCCCC------CcccHHH----
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED-FDVFTVSKSILNSIASDQCT------DKDDLNL---- 279 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~l~~il~~l~~~~~~------~~~~~~~---- 279 (600)
-..++|.|..|+|||||.+.+.... ..+..+.+.++.. ....+.+.+........... +......
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~----~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~ 232 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS----KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAG 232 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC----CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHH
Confidence 3578999999999999999887632 2233344334332 23344444444332221100 1111111
Q ss_pred -HHHHHHHHh--CCCcEEEEEecC
Q 039283 280 -LQEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 280 -l~~~l~~~L--~~k~~LlVlDdv 300 (600)
..-.+.+++ +++++||++||+
T Consensus 233 ~~a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 233 RAAMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEeccch
Confidence 112233444 489999999999
No 496
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=93.15 E-value=0.51 Score=49.89 Aligned_cols=90 Identities=19% Similarity=0.178 Sum_probs=52.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC-CHHHHHHHHHHHhhcCC------CCCcccHHH---
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF-DVFTVSKSILNSIASDQ------CTDKDDLNL--- 279 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~-~~~~~l~~il~~l~~~~------~~~~~~~~~--- 279 (600)
.-+-++|.|.+|+|||+|+..+..+... .+=..++++-+++.. .+.+++..+...=.... ..+......
T Consensus 142 ~GQr~~If~~~G~GKt~L~~~~~~~~~~-~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 142 KGGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChHHHHHHHHHHHHh-cCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4468899999999999999988764322 222356677676554 34555555543211110 001111111
Q ss_pred --HHHHHHHHh---CCCcEEEEEecC
Q 039283 280 --LQEKLKKQL---SGKKFLLVLDDV 300 (600)
Q Consensus 280 --l~~~l~~~L---~~k~~LlVlDdv 300 (600)
..-.+.+++ +++++||++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecch
Confidence 122344555 468999999999
No 497
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=93.13 E-value=0.16 Score=51.34 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=23.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
+...+++|+|++|+|||||+..+....
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998887643
No 498
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=93.11 E-value=0.06 Score=52.86 Aligned_cols=22 Identities=36% Similarity=0.694 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.|.++|++|+||||+|+.+...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999998864
No 499
>PRK13946 shikimate kinase; Provisional
Probab=93.11 E-value=0.076 Score=49.46 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+.|.++|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~ 33 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATM 33 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999863
No 500
>PRK14531 adenylate kinase; Provisional
Probab=93.10 E-value=0.079 Score=49.30 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.0
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..|.|+|++|+||||+++.+...
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~ 25 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAA 25 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35889999999999999988763
Done!