Query 039283
Match_columns 600
No_of_seqs 432 out of 2918
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 13:39:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4E-50 1.4E-54 439.5 24.7 343 187-552 131-504 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 2.3E-40 7.8E-45 397.8 25.9 313 181-525 121-453 (1249)
3 1vt4_I APAF-1 related killer D 100.0 3.4E-40 1.2E-44 366.1 24.1 285 186-517 130-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 100.0 6.5E-37 2.2E-41 339.2 26.6 306 183-522 123-450 (591)
5 2qen_A Walker-type ATPase; unk 99.8 1.9E-17 6.5E-22 170.3 21.9 292 182-518 10-349 (350)
6 1w5s_A Origin recognition comp 99.8 1.2E-17 4.1E-22 176.0 17.3 313 183-513 21-387 (412)
7 2fna_A Conserved hypothetical 99.7 1.4E-16 4.9E-21 164.1 22.5 292 182-517 11-356 (357)
8 3qfl_A MLA10; coiled-coil, (CC 99.7 3.7E-17 1.3E-21 138.1 8.5 79 11-89 2-82 (115)
9 2qby_B CDC6 homolog 3, cell di 99.6 9.2E-14 3.1E-18 144.8 22.9 291 184-500 20-339 (384)
10 1fnn_A CDC6P, cell division co 99.6 1.9E-13 6.5E-18 142.5 25.3 297 184-501 17-352 (389)
11 2v1u_A Cell division control p 99.6 1.6E-13 5.5E-18 142.9 24.0 296 184-500 19-351 (387)
12 2qby_A CDC6 homolog 1, cell di 99.5 2.8E-13 9.7E-18 140.9 19.9 297 183-500 19-348 (386)
13 1njg_A DNA polymerase III subu 99.4 4.6E-12 1.6E-16 122.5 16.5 198 184-398 23-231 (250)
14 2chg_A Replication factor C sm 99.3 3.6E-11 1.2E-15 114.5 16.7 186 184-396 17-205 (226)
15 1hqc_A RUVB; extended AAA-ATPa 99.2 5.5E-11 1.9E-15 120.6 12.0 268 184-499 12-324 (324)
16 1sxj_B Activator 1 37 kDa subu 99.1 2.8E-10 9.4E-15 115.2 14.0 188 184-397 21-212 (323)
17 1iqp_A RFCS; clamp loader, ext 99.0 2.6E-09 9E-14 108.2 13.2 188 184-398 25-215 (327)
18 1jr3_A DNA polymerase III subu 98.9 1.4E-08 4.7E-13 104.9 15.6 195 185-395 17-221 (373)
19 3te6_A Regulatory protein SIR3 98.9 1.1E-08 3.9E-13 101.9 14.2 175 185-362 21-212 (318)
20 2chq_A Replication factor C sm 98.9 2E-08 6.7E-13 101.3 15.9 183 184-396 17-205 (319)
21 1sxj_D Activator 1 41 kDa subu 98.7 1.7E-07 5.8E-12 95.9 15.3 196 184-395 37-235 (353)
22 1jbk_A CLPB protein; beta barr 98.7 6.3E-08 2.1E-12 89.4 9.3 46 184-235 22-67 (195)
23 3pfi_A Holliday junction ATP-d 98.6 1.1E-06 3.7E-11 89.4 17.4 179 184-396 29-228 (338)
24 3bos_A Putative DNA replicatio 98.6 7.9E-08 2.7E-12 92.4 7.7 175 184-396 28-218 (242)
25 3pvs_A Replication-associated 98.5 4.8E-07 1.7E-11 95.2 13.1 181 184-396 26-216 (447)
26 3uk6_A RUVB-like 2; hexameric 98.5 1.1E-06 3.6E-11 90.5 15.2 201 184-395 44-303 (368)
27 3h4m_A Proteasome-activating n 98.5 6.8E-07 2.3E-11 88.5 12.4 186 183-394 16-230 (285)
28 2z4s_A Chromosomal replication 98.5 9.9E-07 3.4E-11 92.9 13.6 162 211-394 130-305 (440)
29 1a5t_A Delta prime, HOLB; zinc 98.5 2.4E-06 8.3E-11 86.6 15.8 172 190-395 8-205 (334)
30 1sxj_E Activator 1 40 kDa subu 98.5 9.9E-07 3.4E-11 90.2 12.9 198 184-396 14-238 (354)
31 3u61_B DNA polymerase accessor 98.5 1.5E-06 5E-11 87.8 13.8 181 184-395 26-216 (324)
32 2qz4_A Paraplegin; AAA+, SPG7, 98.4 4E-06 1.4E-10 81.6 16.0 188 184-395 6-222 (262)
33 3syl_A Protein CBBX; photosynt 98.4 1.3E-06 4.5E-11 87.4 12.5 161 185-362 32-218 (309)
34 1sxj_A Activator 1 95 kDa subu 98.4 2.2E-06 7.6E-11 92.3 14.2 197 184-395 39-253 (516)
35 1d2n_A N-ethylmaleimide-sensit 98.4 7.2E-06 2.5E-10 80.5 16.4 170 185-386 34-228 (272)
36 1sxj_C Activator 1 40 kDa subu 98.3 4.9E-06 1.7E-10 84.6 13.4 182 185-393 26-210 (340)
37 3eie_A Vacuolar protein sortin 98.3 2.8E-05 9.5E-10 78.3 18.1 188 184-396 18-229 (322)
38 1l8q_A Chromosomal replication 98.3 1.4E-05 4.9E-10 80.5 15.7 157 210-391 36-204 (324)
39 2p65_A Hypothetical protein PF 98.3 9.7E-07 3.3E-11 80.9 6.4 45 184-234 22-66 (187)
40 2qp9_X Vacuolar protein sortin 98.2 5E-05 1.7E-09 77.5 18.1 187 184-395 51-261 (355)
41 1xwi_A SKD1 protein; VPS4B, AA 98.2 0.0001 3.4E-09 74.1 19.7 190 184-397 12-225 (322)
42 3n70_A Transport activator; si 98.2 1.1E-06 3.6E-11 77.6 4.4 115 185-331 2-116 (145)
43 3d8b_A Fidgetin-like protein 1 98.1 4.3E-05 1.5E-09 78.1 16.3 189 184-397 84-297 (357)
44 2zan_A Vacuolar protein sortin 98.1 7.8E-05 2.7E-09 78.4 17.5 189 184-396 134-346 (444)
45 3pxg_A Negative regulator of g 98.1 9.5E-06 3.2E-10 86.1 10.5 147 184-361 180-338 (468)
46 3ec2_A DNA replication protein 98.1 5.7E-06 1.9E-10 75.7 7.6 122 189-331 19-143 (180)
47 2gno_A DNA polymerase III, gam 98.1 1.6E-05 5.4E-10 79.2 11.0 149 188-361 1-152 (305)
48 1qvr_A CLPB protein; coiled co 98.1 4.6E-06 1.6E-10 95.4 7.8 155 184-360 170-344 (854)
49 3b9p_A CG5977-PA, isoform A; A 98.0 7E-05 2.4E-09 74.3 15.3 185 184-395 21-233 (297)
50 3cf0_A Transitional endoplasmi 98.0 6.8E-05 2.3E-09 74.6 14.9 181 184-390 15-223 (301)
51 3vfd_A Spastin; ATPase, microt 98.0 0.00017 6E-09 74.5 16.7 188 184-396 115-327 (389)
52 1r6b_X CLPA protein; AAA+, N-t 97.9 0.00014 4.8E-09 82.2 16.7 157 184-361 186-362 (758)
53 3hu3_A Transitional endoplasmi 97.9 0.0001 3.6E-09 78.2 14.6 185 184-394 204-414 (489)
54 4fcw_A Chaperone protein CLPB; 97.9 3.8E-05 1.3E-09 76.7 10.5 137 185-330 18-169 (311)
55 1in4_A RUVB, holliday junction 97.9 0.00058 2E-08 68.9 18.4 178 184-395 25-223 (334)
56 3co5_A Putative two-component 97.9 5.3E-06 1.8E-10 72.9 2.7 110 185-330 5-115 (143)
57 3pxi_A Negative regulator of g 97.8 4.2E-05 1.4E-09 86.4 9.9 149 184-361 180-338 (758)
58 2c9o_A RUVB-like 1; hexameric 97.8 0.00012 4.1E-09 77.4 12.4 98 293-394 297-409 (456)
59 2bjv_A PSP operon transcriptio 97.8 6.7E-05 2.3E-09 73.1 9.2 46 185-234 7-52 (265)
60 4b4t_J 26S protease regulatory 97.7 0.00028 9.7E-09 72.0 13.7 179 184-388 148-354 (405)
61 1ojl_A Transcriptional regulat 97.7 6.2E-05 2.1E-09 75.0 8.6 47 184-234 2-48 (304)
62 1ofh_A ATP-dependent HSL prote 97.7 0.00014 4.6E-09 72.5 10.8 51 184-234 15-73 (310)
63 4b4t_L 26S protease subunit RP 97.7 0.0004 1.4E-08 72.1 14.3 179 184-388 181-387 (437)
64 2w58_A DNAI, primosome compone 97.7 9.6E-05 3.3E-09 68.7 8.4 119 192-331 37-159 (202)
65 4b4t_K 26S protease regulatory 97.7 0.00036 1.2E-08 72.3 13.2 97 184-301 172-275 (428)
66 2r62_A Cell division protease 97.6 3.6E-05 1.2E-09 75.2 4.9 51 184-234 11-67 (268)
67 2kjq_A DNAA-related protein; s 97.5 5.4E-05 1.9E-09 66.8 4.1 38 211-250 36-73 (149)
68 3pxi_A Negative regulator of g 97.5 0.00034 1.2E-08 78.9 11.5 155 184-360 491-674 (758)
69 1lv7_A FTSH; alpha/beta domain 97.5 0.002 6.9E-08 62.2 15.1 184 184-393 12-223 (257)
70 4b4t_M 26S protease regulatory 97.5 0.00034 1.2E-08 72.5 9.8 178 184-387 181-386 (434)
71 2ce7_A Cell division protein F 97.5 0.0015 5E-08 68.8 14.6 179 184-388 16-221 (476)
72 3m6a_A ATP-dependent protease 97.5 0.00043 1.5E-08 74.7 10.9 165 184-361 81-266 (543)
73 4b4t_H 26S protease regulatory 97.4 0.0015 5.1E-08 67.7 13.3 179 184-388 209-415 (467)
74 2cvh_A DNA repair and recombin 97.4 0.0009 3.1E-08 62.8 10.8 86 210-301 19-115 (220)
75 4b4t_I 26S protease regulatory 97.4 0.00082 2.8E-08 69.0 11.1 178 184-387 182-387 (437)
76 2r44_A Uncharacterized protein 97.4 0.00069 2.4E-08 68.2 10.5 152 185-363 28-200 (331)
77 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00056 1.9E-08 77.2 9.8 133 184-330 458-607 (758)
78 3cf2_A TER ATPase, transitiona 97.3 0.0038 1.3E-07 69.7 16.2 179 184-388 204-407 (806)
79 3t15_A Ribulose bisphosphate c 97.2 0.00035 1.2E-08 69.1 6.4 26 209-234 34-59 (293)
80 1qvr_A CLPB protein; coiled co 97.2 0.00086 3E-08 76.6 9.9 136 185-330 559-710 (854)
81 2vhj_A Ntpase P4, P4; non- hyd 97.2 0.00035 1.2E-08 69.0 5.3 68 211-301 123-192 (331)
82 3io5_A Recombination and repai 97.0 0.0033 1.1E-07 61.8 10.1 85 212-301 29-121 (333)
83 3hr8_A Protein RECA; alpha and 96.9 0.0028 9.6E-08 64.0 9.7 86 210-302 60-150 (356)
84 1ixz_A ATP-dependent metallopr 96.8 0.026 8.8E-07 54.1 15.3 51 184-234 16-72 (254)
85 1um8_A ATP-dependent CLP prote 96.8 0.0041 1.4E-07 63.7 9.7 50 185-234 22-95 (376)
86 2dhr_A FTSH; AAA+ protein, hex 96.7 0.01 3.4E-07 62.9 12.4 176 183-388 30-236 (499)
87 1ypw_A Transitional endoplasmi 96.7 0.01 3.4E-07 67.1 13.2 156 184-361 204-385 (806)
88 1g5t_A COB(I)alamin adenosyltr 96.7 0.0012 4.3E-08 60.2 4.5 114 212-331 29-163 (196)
89 1v5w_A DMC1, meiotic recombina 96.7 0.0065 2.2E-07 61.3 10.3 90 210-300 121-228 (343)
90 1xp8_A RECA protein, recombina 96.7 0.0058 2E-07 62.1 9.9 85 210-301 73-162 (366)
91 2x8a_A Nuclear valosin-contain 96.7 0.01 3.4E-07 57.9 11.3 154 185-361 11-191 (274)
92 1iy2_A ATP-dependent metallopr 96.6 0.062 2.1E-06 52.2 16.8 180 183-388 39-245 (278)
93 1jr3_D DNA polymerase III, del 96.6 0.03 1E-06 56.4 14.9 158 210-394 17-184 (343)
94 1n0w_A DNA repair protein RAD5 96.6 0.0049 1.7E-07 58.6 8.5 90 210-300 23-128 (243)
95 2b8t_A Thymidine kinase; deoxy 96.6 0.001 3.4E-08 62.7 3.3 114 210-331 11-126 (223)
96 2qgz_A Helicase loader, putati 96.6 0.0035 1.2E-07 62.3 7.4 43 190-235 134-176 (308)
97 2zr9_A Protein RECA, recombina 96.6 0.0073 2.5E-07 61.0 9.6 85 210-301 60-149 (349)
98 1u94_A RECA protein, recombina 96.4 0.0095 3.3E-07 60.3 9.2 85 210-301 62-151 (356)
99 2z43_A DNA repair and recombin 96.3 0.0094 3.2E-07 59.7 8.7 90 210-300 106-212 (324)
100 2i1q_A DNA repair and recombin 96.3 0.0099 3.4E-07 59.4 8.6 90 210-300 97-213 (322)
101 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0069 2.4E-07 57.1 7.0 115 212-331 24-168 (235)
102 1rz3_A Hypothetical protein rb 96.1 0.0051 1.7E-07 56.9 5.2 44 188-234 2-45 (201)
103 1odf_A YGR205W, hypothetical 3 96.1 0.029 9.8E-07 55.0 10.7 82 209-290 29-117 (290)
104 2px0_A Flagellar biosynthesis 96.0 0.021 7.1E-07 56.3 9.3 87 210-300 104-191 (296)
105 3bh0_A DNAB-like replicative h 95.9 0.04 1.4E-06 54.8 11.1 52 210-265 67-118 (315)
106 1pzn_A RAD51, DNA repair and r 95.9 0.019 6.7E-07 57.9 8.6 91 210-301 130-241 (349)
107 4a74_A DNA repair and recombin 95.8 0.03 1E-06 52.5 9.4 46 210-255 24-73 (231)
108 3tqc_A Pantothenate kinase; bi 95.8 0.027 9.2E-07 55.9 9.1 103 186-291 69-171 (321)
109 3nbx_X ATPase RAVA; AAA+ ATPas 95.7 0.0076 2.6E-07 63.8 4.7 42 185-234 23-64 (500)
110 3lda_A DNA repair protein RAD5 95.6 0.033 1.1E-06 57.2 8.9 57 210-267 177-237 (400)
111 1qhx_A CPT, protein (chloramph 95.5 0.0069 2.4E-07 54.5 3.2 22 212-233 4-25 (178)
112 3lw7_A Adenylate kinase relate 95.5 0.0066 2.3E-07 54.3 3.0 20 212-231 2-21 (179)
113 3kb2_A SPBC2 prophage-derived 95.4 0.0073 2.5E-07 53.9 3.2 22 212-233 2-23 (173)
114 3c8u_A Fructokinase; YP_612366 95.4 0.012 4E-07 54.7 4.6 38 193-234 8-45 (208)
115 1ly1_A Polynucleotide kinase; 95.4 0.009 3.1E-07 53.8 3.5 22 212-233 3-24 (181)
116 1zp6_A Hypothetical protein AT 95.3 0.0099 3.4E-07 54.2 3.6 24 210-233 8-31 (191)
117 3hws_A ATP-dependent CLP prote 95.3 0.013 4.3E-07 59.7 4.8 50 185-234 16-74 (363)
118 1gvn_B Zeta; postsegregational 95.3 0.017 6E-07 56.6 5.4 40 193-233 16-55 (287)
119 3ice_A Transcription terminati 95.2 0.036 1.2E-06 55.9 7.5 53 195-253 163-216 (422)
120 1vma_A Cell division protein F 95.2 0.06 2.1E-06 53.1 9.1 89 210-301 103-196 (306)
121 3vaa_A Shikimate kinase, SK; s 95.2 0.01 3.5E-07 54.7 3.4 23 211-233 25-47 (199)
122 1kgd_A CASK, peripheral plasma 95.2 0.01 3.4E-07 53.8 3.2 23 212-234 6-28 (180)
123 1sky_E F1-ATPase, F1-ATP synth 95.1 0.056 1.9E-06 56.2 8.9 51 212-263 152-203 (473)
124 3uie_A Adenylyl-sulfate kinase 95.1 0.013 4.5E-07 53.9 3.9 26 210-235 24-49 (200)
125 3dm5_A SRP54, signal recogniti 95.1 0.097 3.3E-06 54.2 10.6 25 210-234 99-123 (443)
126 1ex7_A Guanylate kinase; subst 95.1 0.01 3.4E-07 54.1 2.8 22 212-233 2-23 (186)
127 1kag_A SKI, shikimate kinase I 95.1 0.0092 3.1E-07 53.4 2.6 22 212-233 5-26 (173)
128 2rhm_A Putative kinase; P-loop 95.0 0.013 4.5E-07 53.3 3.7 24 210-233 4-27 (193)
129 3upu_A ATP-dependent DNA helic 95.0 0.026 8.8E-07 59.4 6.2 24 212-235 46-69 (459)
130 1g8p_A Magnesium-chelatase 38 95.0 0.01 3.5E-07 59.8 3.0 45 184-234 24-68 (350)
131 3trf_A Shikimate kinase, SK; a 95.0 0.012 4.1E-07 53.3 3.2 23 211-233 5-27 (185)
132 3cmu_A Protein RECA, recombina 94.9 0.052 1.8E-06 66.1 9.1 85 210-301 1426-1515(2050)
133 1nks_A Adenylate kinase; therm 94.9 0.013 4.5E-07 53.3 3.3 23 212-234 2-24 (194)
134 3tau_A Guanylate kinase, GMP k 94.9 0.014 4.9E-07 54.2 3.5 25 210-234 7-31 (208)
135 3kl4_A SRP54, signal recogniti 94.9 0.11 3.9E-06 53.6 10.6 26 210-235 96-121 (433)
136 1knq_A Gluconate kinase; ALFA/ 94.9 0.018 6E-07 51.7 4.0 24 210-233 7-30 (175)
137 3t61_A Gluconokinase; PSI-biol 94.9 0.013 4.3E-07 54.1 3.0 24 211-234 18-41 (202)
138 4eun_A Thermoresistant glucoki 94.9 0.014 5E-07 53.7 3.4 24 210-233 28-51 (200)
139 2p5t_B PEZT; postsegregational 94.9 0.023 7.8E-07 54.6 4.9 40 193-233 15-54 (253)
140 3tr0_A Guanylate kinase, GMP k 94.8 0.016 5.5E-07 53.4 3.5 22 212-233 8-29 (205)
141 1kht_A Adenylate kinase; phosp 94.7 0.015 5.2E-07 52.8 3.1 23 212-234 4-26 (192)
142 4a1f_A DNAB helicase, replicat 94.7 0.14 4.7E-06 51.2 10.3 52 211-266 46-97 (338)
143 3asz_A Uridine kinase; cytidin 94.7 0.017 5.9E-07 53.5 3.5 25 210-234 5-29 (211)
144 3iij_A Coilin-interacting nucl 94.7 0.014 4.9E-07 52.6 2.8 24 211-234 11-34 (180)
145 1ukz_A Uridylate kinase; trans 94.7 0.021 7.2E-07 52.6 4.0 25 209-233 13-37 (203)
146 4gp7_A Metallophosphoesterase; 94.7 0.017 5.9E-07 51.7 3.3 22 211-232 9-30 (171)
147 2qor_A Guanylate kinase; phosp 94.7 0.014 4.9E-07 53.9 2.8 24 211-234 12-35 (204)
148 2j41_A Guanylate kinase; GMP, 94.7 0.018 6.3E-07 53.0 3.5 23 211-233 6-28 (207)
149 1uf9_A TT1252 protein; P-loop, 94.6 0.019 6.7E-07 52.7 3.7 25 209-233 6-30 (203)
150 1y63_A LMAJ004144AAA protein; 94.6 0.019 6.6E-07 52.1 3.5 24 210-233 9-32 (184)
151 1tev_A UMP-CMP kinase; ploop, 94.6 0.019 6.6E-07 52.3 3.5 23 211-233 3-25 (196)
152 3jvv_A Twitching mobility prot 94.6 0.022 7.7E-07 57.5 4.2 109 212-334 124-234 (356)
153 2ze6_A Isopentenyl transferase 94.6 0.019 6.5E-07 55.1 3.5 23 212-234 2-24 (253)
154 3umf_A Adenylate kinase; rossm 94.6 0.022 7.5E-07 53.2 3.8 26 209-234 27-52 (217)
155 2bdt_A BH3686; alpha-beta prot 94.6 0.02 6.7E-07 52.2 3.4 22 212-233 3-24 (189)
156 2c95_A Adenylate kinase 1; tra 94.6 0.019 6.6E-07 52.3 3.4 23 211-233 9-31 (196)
157 3a00_A Guanylate kinase, GMP k 94.5 0.015 5.2E-07 52.9 2.6 23 212-234 2-24 (186)
158 2qt1_A Nicotinamide riboside k 94.5 0.022 7.4E-07 52.7 3.7 24 210-233 20-43 (207)
159 1zuh_A Shikimate kinase; alpha 94.5 0.019 6.5E-07 51.1 3.2 24 210-233 6-29 (168)
160 1ye8_A Protein THEP1, hypothet 94.5 0.019 6.6E-07 51.8 3.2 23 213-235 2-24 (178)
161 2ga8_A Hypothetical 39.9 kDa p 94.5 0.036 1.2E-06 55.5 5.3 44 189-234 4-47 (359)
162 2cdn_A Adenylate kinase; phosp 94.5 0.024 8.2E-07 52.2 3.8 24 210-233 19-42 (201)
163 3a4m_A L-seryl-tRNA(SEC) kinas 94.4 0.022 7.7E-07 54.9 3.6 24 211-234 4-27 (260)
164 2jaq_A Deoxyguanosine kinase; 94.4 0.02 6.9E-07 52.6 3.2 22 213-234 2-23 (205)
165 1via_A Shikimate kinase; struc 94.4 0.017 5.7E-07 51.9 2.6 21 213-233 6-26 (175)
166 3ney_A 55 kDa erythrocyte memb 94.4 0.022 7.6E-07 52.2 3.3 24 210-233 18-41 (197)
167 3cf2_A TER ATPase, transitiona 94.4 0.07 2.4E-06 59.6 7.9 99 182-301 475-580 (806)
168 2plr_A DTMP kinase, probable t 94.4 0.024 8.3E-07 52.4 3.6 23 212-234 5-27 (213)
169 1tue_A Replication protein E1; 94.4 0.033 1.1E-06 51.0 4.4 37 193-234 45-81 (212)
170 2xxa_A Signal recognition part 94.3 0.18 6.2E-06 52.3 10.5 27 209-235 98-124 (433)
171 1qf9_A UMP/CMP kinase, protein 94.3 0.028 9.7E-07 51.0 4.0 23 211-233 6-28 (194)
172 3llm_A ATP-dependent RNA helic 94.3 0.079 2.7E-06 50.0 7.2 102 193-303 66-188 (235)
173 3cm0_A Adenylate kinase; ATP-b 94.3 0.024 8.3E-07 51.3 3.5 22 212-233 5-26 (186)
174 2yvu_A Probable adenylyl-sulfa 94.3 0.029 1E-06 50.8 4.0 26 210-235 12-37 (186)
175 1xjc_A MOBB protein homolog; s 94.3 0.028 9.5E-07 50.1 3.7 25 210-234 3-27 (169)
176 1lvg_A Guanylate kinase, GMP k 94.3 0.018 6.2E-07 53.0 2.5 22 212-233 5-26 (198)
177 1cke_A CK, MSSA, protein (cyti 94.3 0.022 7.6E-07 53.4 3.2 22 212-233 6-27 (227)
178 2iyv_A Shikimate kinase, SK; t 94.3 0.017 5.9E-07 52.2 2.3 22 212-233 3-24 (184)
179 2bwj_A Adenylate kinase 5; pho 94.2 0.023 7.8E-07 52.0 3.1 22 212-233 13-34 (199)
180 2vli_A Antibiotic resistance p 94.2 0.018 6.1E-07 52.0 2.3 23 211-233 5-27 (183)
181 2if2_A Dephospho-COA kinase; a 94.2 0.023 7.8E-07 52.4 3.1 22 212-233 2-23 (204)
182 2bbw_A Adenylate kinase 4, AK4 94.2 0.024 8.3E-07 54.0 3.3 23 211-233 27-49 (246)
183 1e6c_A Shikimate kinase; phosp 94.2 0.02 6.9E-07 51.1 2.6 22 212-233 3-24 (173)
184 1aky_A Adenylate kinase; ATP:A 94.2 0.026 8.8E-07 52.8 3.4 23 211-233 4-26 (220)
185 1jjv_A Dephospho-COA kinase; P 94.2 0.026 9E-07 52.1 3.4 22 212-233 3-24 (206)
186 3e70_C DPA, signal recognition 94.1 0.26 8.8E-06 49.1 10.8 26 210-235 128-153 (328)
187 1uj2_A Uridine-cytidine kinase 94.1 0.028 9.7E-07 53.8 3.6 25 209-233 20-44 (252)
188 2z0h_A DTMP kinase, thymidylat 94.1 0.077 2.6E-06 48.3 6.4 22 213-234 2-23 (197)
189 1nn5_A Similar to deoxythymidy 94.1 0.028 9.6E-07 52.1 3.4 24 211-234 9-32 (215)
190 3tlx_A Adenylate kinase 2; str 94.0 0.04 1.4E-06 52.5 4.5 24 210-233 28-51 (243)
191 2pt5_A Shikimate kinase, SK; a 94.0 0.028 9.7E-07 49.8 3.2 21 213-233 2-22 (168)
192 2wwf_A Thymidilate kinase, put 94.0 0.028 9.7E-07 52.0 3.3 24 211-234 10-33 (212)
193 1q57_A DNA primase/helicase; d 94.0 0.22 7.4E-06 53.0 10.6 54 210-266 241-294 (503)
194 2pbr_A DTMP kinase, thymidylat 94.0 0.028 9.7E-07 51.1 3.2 22 213-234 2-23 (195)
195 3aez_A Pantothenate kinase; tr 94.0 0.032 1.1E-06 55.4 3.7 26 209-234 88-113 (312)
196 2jeo_A Uridine-cytidine kinase 93.9 0.034 1.2E-06 53.0 3.8 24 210-233 24-47 (245)
197 1znw_A Guanylate kinase, GMP k 93.9 0.03 1E-06 51.8 3.3 22 212-233 21-42 (207)
198 3e1s_A Exodeoxyribonuclease V, 93.9 0.19 6.3E-06 54.3 10.0 103 212-328 205-313 (574)
199 2pez_A Bifunctional 3'-phospho 93.9 0.035 1.2E-06 49.9 3.6 24 211-234 5-28 (179)
200 3hjn_A DTMP kinase, thymidylat 93.9 0.12 3.9E-06 47.5 7.2 23 213-235 2-24 (197)
201 1rj9_A FTSY, signal recognitio 93.8 0.034 1.2E-06 54.9 3.7 25 210-234 101-125 (304)
202 2q6t_A DNAB replication FORK h 93.8 0.3 1E-05 50.9 11.2 54 210-266 199-252 (444)
203 1z6g_A Guanylate kinase; struc 93.8 0.027 9.2E-07 52.7 2.8 22 212-233 24-45 (218)
204 1s96_A Guanylate kinase, GMP k 93.8 0.033 1.1E-06 52.2 3.3 24 211-234 16-39 (219)
205 2hf9_A Probable hydrogenase ni 93.8 0.036 1.2E-06 51.9 3.6 39 190-234 23-61 (226)
206 2ffh_A Protein (FFH); SRP54, s 93.8 0.2 6.9E-06 51.6 9.5 25 211-235 98-122 (425)
207 1zd8_A GTP:AMP phosphotransfer 93.8 0.031 1.1E-06 52.5 3.1 23 211-233 7-29 (227)
208 2v54_A DTMP kinase, thymidylat 93.8 0.036 1.2E-06 50.9 3.5 23 212-234 5-27 (204)
209 1ls1_A Signal recognition part 93.7 0.26 8.7E-06 48.3 9.8 25 211-235 98-122 (295)
210 3fb4_A Adenylate kinase; psych 93.7 0.035 1.2E-06 51.7 3.4 21 213-233 2-22 (216)
211 3zvl_A Bifunctional polynucleo 93.7 0.17 5.9E-06 52.3 8.9 26 209-234 256-281 (416)
212 1htw_A HI0065; nucleotide-bind 93.7 0.041 1.4E-06 48.5 3.6 24 211-234 33-56 (158)
213 3cmu_A Protein RECA, recombina 93.7 0.13 4.5E-06 62.6 8.9 86 210-302 382-472 (2050)
214 2j37_W Signal recognition part 93.7 0.55 1.9E-05 49.5 12.8 27 209-235 99-125 (504)
215 1sq5_A Pantothenate kinase; P- 93.7 0.069 2.3E-06 52.8 5.5 25 209-233 78-102 (308)
216 2grj_A Dephospho-COA kinase; T 93.6 0.039 1.3E-06 50.5 3.4 24 210-233 11-34 (192)
217 3cmw_A Protein RECA, recombina 93.6 0.12 4E-06 62.2 8.2 86 210-302 382-472 (1706)
218 3l0o_A Transcription terminati 93.6 0.045 1.5E-06 55.2 4.0 52 195-252 164-216 (427)
219 1zak_A Adenylate kinase; ATP:A 93.6 0.033 1.1E-06 52.2 2.9 24 211-234 5-28 (222)
220 1gtv_A TMK, thymidylate kinase 93.6 0.021 7.3E-07 52.9 1.6 22 213-234 2-23 (214)
221 2f6r_A COA synthase, bifunctio 93.5 0.042 1.4E-06 53.6 3.7 24 209-232 73-96 (281)
222 3dl0_A Adenylate kinase; phosp 93.5 0.038 1.3E-06 51.4 3.3 21 213-233 2-22 (216)
223 4e22_A Cytidylate kinase; P-lo 93.5 0.04 1.4E-06 52.8 3.4 23 211-233 27-49 (252)
224 1m7g_A Adenylylsulfate kinase; 93.5 0.044 1.5E-06 50.8 3.7 25 211-235 25-49 (211)
225 2ged_A SR-beta, signal recogni 93.5 0.059 2E-06 48.8 4.5 26 209-234 46-71 (193)
226 1g41_A Heat shock protein HSLU 93.4 0.063 2.1E-06 55.7 4.9 51 184-234 15-73 (444)
227 1vht_A Dephospho-COA kinase; s 93.4 0.049 1.7E-06 50.8 3.8 23 211-233 4-26 (218)
228 3k1j_A LON protease, ATP-depen 93.3 0.052 1.8E-06 59.2 4.3 43 184-234 41-83 (604)
229 2ck3_D ATP synthase subunit be 93.3 0.46 1.6E-05 49.3 11.0 65 195-265 142-207 (482)
230 2ehv_A Hypothetical protein PH 93.2 0.043 1.5E-06 52.2 3.1 23 211-233 30-52 (251)
231 1j8m_F SRP54, signal recogniti 93.2 0.28 9.5E-06 48.1 9.0 89 211-301 98-190 (297)
232 2f1r_A Molybdopterin-guanine d 93.2 0.032 1.1E-06 50.0 2.0 25 212-236 3-27 (171)
233 2wsm_A Hydrogenase expression/ 93.2 0.044 1.5E-06 51.1 3.1 41 188-234 13-53 (221)
234 2r6a_A DNAB helicase, replicat 93.2 0.34 1.2E-05 50.7 10.2 52 210-264 202-253 (454)
235 4akg_A Glutathione S-transfera 93.2 0.34 1.2E-05 61.1 11.6 161 193-384 1256-1452(2695)
236 2onk_A Molybdate/tungstate ABC 93.1 0.048 1.7E-06 51.8 3.3 22 212-233 25-46 (240)
237 3bgw_A DNAB-like replicative h 93.1 0.32 1.1E-05 50.6 9.8 52 210-265 196-247 (444)
238 3lnc_A Guanylate kinase, GMP k 93.1 0.032 1.1E-06 52.6 1.9 21 212-232 28-48 (231)
239 4edh_A DTMP kinase, thymidylat 93.1 0.27 9.3E-06 45.6 8.3 25 211-235 6-30 (213)
240 3fwy_A Light-independent proto 93.1 0.054 1.8E-06 53.7 3.6 40 209-250 46-85 (314)
241 2i3b_A HCR-ntpase, human cance 93.0 0.043 1.5E-06 50.1 2.6 23 213-235 3-25 (189)
242 3sr0_A Adenylate kinase; phosp 93.0 0.056 1.9E-06 50.0 3.4 73 213-301 2-84 (206)
243 3tif_A Uncharacterized ABC tra 93.0 0.054 1.8E-06 51.3 3.3 22 212-233 32-53 (235)
244 2yhs_A FTSY, cell division pro 92.9 0.36 1.2E-05 50.6 9.7 43 209-254 291-333 (503)
245 3be4_A Adenylate kinase; malar 92.9 0.045 1.5E-06 51.0 2.7 23 212-234 6-28 (217)
246 1np6_A Molybdopterin-guanine d 92.9 0.056 1.9E-06 48.5 3.2 24 211-234 6-29 (174)
247 1fx0_B ATP synthase beta chain 92.9 0.34 1.2E-05 50.5 9.4 63 196-264 155-218 (498)
248 2pcj_A ABC transporter, lipopr 92.9 0.049 1.7E-06 51.1 2.9 22 212-233 31-52 (224)
249 3b9q_A Chloroplast SRP recepto 92.9 0.059 2E-06 53.1 3.6 26 210-235 99-124 (302)
250 1a7j_A Phosphoribulokinase; tr 92.9 0.034 1.2E-06 54.5 1.8 24 210-233 4-27 (290)
251 3ake_A Cytidylate kinase; CMP 92.8 0.056 1.9E-06 49.7 3.2 21 213-233 4-24 (208)
252 2dr3_A UPF0273 protein PH0284; 92.8 0.099 3.4E-06 49.4 5.0 39 211-251 23-61 (247)
253 2xb4_A Adenylate kinase; ATP-b 92.7 0.058 2E-06 50.6 3.2 21 213-233 2-22 (223)
254 3nwj_A ATSK2; P loop, shikimat 92.7 0.047 1.6E-06 52.2 2.6 22 212-233 49-70 (250)
255 3b85_A Phosphate starvation-in 92.7 0.048 1.6E-06 50.5 2.5 23 212-234 23-45 (208)
256 3cmw_A Protein RECA, recombina 92.7 0.2 6.7E-06 60.4 8.2 84 210-300 1430-1518(1706)
257 3r20_A Cytidylate kinase; stru 92.7 0.061 2.1E-06 50.7 3.2 23 211-233 9-31 (233)
258 1e4v_A Adenylate kinase; trans 92.7 0.059 2E-06 50.1 3.1 21 213-233 2-22 (214)
259 3d3q_A TRNA delta(2)-isopenten 92.7 0.062 2.1E-06 53.6 3.4 22 212-233 8-29 (340)
260 2cbz_A Multidrug resistance-as 92.7 0.063 2.2E-06 50.9 3.3 22 212-233 32-53 (237)
261 1ak2_A Adenylate kinase isoenz 92.7 0.067 2.3E-06 50.5 3.5 24 211-234 16-39 (233)
262 3exa_A TRNA delta(2)-isopenten 92.7 0.068 2.3E-06 52.5 3.6 23 211-233 3-25 (322)
263 3p32_A Probable GTPase RV1496/ 92.7 0.1 3.6E-06 52.7 5.2 38 193-234 65-102 (355)
264 3a8t_A Adenylate isopentenyltr 92.6 0.071 2.4E-06 53.0 3.8 24 210-233 39-62 (339)
265 3foz_A TRNA delta(2)-isopenten 92.6 0.078 2.7E-06 52.0 3.9 24 210-233 9-32 (316)
266 3crm_A TRNA delta(2)-isopenten 92.5 0.067 2.3E-06 53.0 3.4 22 212-233 6-27 (323)
267 3gfo_A Cobalt import ATP-bindi 92.5 0.061 2.1E-06 52.2 3.0 22 212-233 35-56 (275)
268 1ltq_A Polynucleotide kinase; 92.5 0.069 2.3E-06 52.5 3.5 22 212-233 3-24 (301)
269 1b0u_A Histidine permease; ABC 92.5 0.068 2.3E-06 51.5 3.3 22 212-233 33-54 (262)
270 4eaq_A DTMP kinase, thymidylat 92.5 0.14 4.9E-06 48.1 5.6 26 210-235 25-50 (229)
271 1u0j_A DNA replication protein 92.4 0.13 4.6E-06 49.2 5.2 36 194-233 91-126 (267)
272 3ld9_A DTMP kinase, thymidylat 92.4 0.25 8.4E-06 46.2 6.9 28 209-236 19-46 (223)
273 1ji0_A ABC transporter; ATP bi 92.4 0.066 2.2E-06 50.9 3.1 22 212-233 33-54 (240)
274 2zej_A Dardarin, leucine-rich 92.4 0.061 2.1E-06 48.5 2.7 21 213-233 4-24 (184)
275 1mv5_A LMRA, multidrug resista 92.4 0.079 2.7E-06 50.4 3.6 23 211-233 28-50 (243)
276 1cr0_A DNA primase/helicase; R 92.3 0.26 8.8E-06 48.2 7.5 51 211-264 35-85 (296)
277 1g6h_A High-affinity branched- 92.3 0.067 2.3E-06 51.4 3.1 22 212-233 34-55 (257)
278 1oix_A RAS-related protein RAB 92.3 0.071 2.4E-06 48.4 3.1 24 211-234 29-52 (191)
279 2pze_A Cystic fibrosis transme 92.3 0.068 2.3E-06 50.4 3.0 22 212-233 35-56 (229)
280 4g1u_C Hemin import ATP-bindin 92.2 0.068 2.3E-06 51.6 3.0 22 212-233 38-59 (266)
281 1sgw_A Putative ABC transporte 92.2 0.059 2E-06 50.2 2.5 22 212-233 36-57 (214)
282 2olj_A Amino acid ABC transpor 92.2 0.076 2.6E-06 51.2 3.3 23 211-233 50-72 (263)
283 2d2e_A SUFC protein; ABC-ATPas 92.2 0.072 2.5E-06 50.9 3.2 22 212-233 30-51 (250)
284 2ff7_A Alpha-hemolysin translo 92.2 0.07 2.4E-06 50.9 3.1 22 212-233 36-57 (247)
285 2eyu_A Twitching motility prot 92.2 0.087 3E-06 50.7 3.7 110 211-333 25-135 (261)
286 2og2_A Putative signal recogni 92.2 0.082 2.8E-06 53.3 3.6 26 210-235 156-181 (359)
287 2wji_A Ferrous iron transport 92.1 0.086 3E-06 46.5 3.4 22 212-233 4-25 (165)
288 2fz4_A DNA repair protein RAD2 92.1 0.58 2E-05 44.1 9.4 101 214-328 111-226 (237)
289 2dyk_A GTP-binding protein; GT 92.1 0.092 3.1E-06 45.7 3.5 23 212-234 2-24 (161)
290 2ghi_A Transport protein; mult 92.0 0.083 2.8E-06 50.8 3.3 22 212-233 47-68 (260)
291 1vpl_A ABC transporter, ATP-bi 92.0 0.084 2.9E-06 50.6 3.3 22 212-233 42-63 (256)
292 2v9p_A Replication protein E1; 92.0 0.084 2.9E-06 51.9 3.4 24 210-233 125-148 (305)
293 2ixe_A Antigen peptide transpo 92.0 0.084 2.9E-06 51.1 3.3 23 211-233 45-67 (271)
294 2zu0_C Probable ATP-dependent 92.0 0.087 3E-06 50.9 3.4 22 212-233 47-68 (267)
295 2f9l_A RAB11B, member RAS onco 92.0 0.078 2.7E-06 48.4 3.0 24 211-234 5-28 (199)
296 2qmh_A HPR kinase/phosphorylas 92.0 0.087 3E-06 48.0 3.1 22 212-233 35-56 (205)
297 2qi9_C Vitamin B12 import ATP- 91.9 0.08 2.7E-06 50.6 3.0 22 212-233 27-48 (249)
298 2vp4_A Deoxynucleoside kinase; 91.9 0.082 2.8E-06 49.7 3.1 25 209-233 18-42 (230)
299 1yrb_A ATP(GTP)binding protein 91.8 0.098 3.3E-06 50.1 3.6 26 210-235 13-38 (262)
300 2nq2_C Hypothetical ABC transp 91.8 0.084 2.9E-06 50.5 3.0 22 212-233 32-53 (253)
301 2ihy_A ABC transporter, ATP-bi 91.8 0.084 2.9E-06 51.4 3.0 22 212-233 48-69 (279)
302 2yz2_A Putative ABC transporte 91.7 0.093 3.2E-06 50.7 3.3 22 212-233 34-55 (266)
303 2wjg_A FEOB, ferrous iron tran 91.6 0.13 4.5E-06 46.2 4.1 25 210-234 6-30 (188)
304 1nlf_A Regulatory protein REPA 91.6 0.085 2.9E-06 51.3 2.9 23 212-234 31-53 (279)
305 1zu4_A FTSY; GTPase, signal re 91.6 0.13 4.3E-06 51.2 4.2 26 210-235 104-129 (320)
306 1svm_A Large T antigen; AAA+ f 91.6 0.099 3.4E-06 53.1 3.5 24 210-233 168-191 (377)
307 2qe7_A ATP synthase subunit al 91.6 0.19 6.4E-06 52.5 5.6 96 196-300 152-263 (502)
308 2ocp_A DGK, deoxyguanosine kin 91.5 0.11 3.7E-06 49.3 3.5 24 211-234 2-25 (241)
309 2v3c_C SRP54, signal recogniti 91.5 0.14 4.9E-06 53.0 4.7 27 209-235 97-123 (432)
310 3lv8_A DTMP kinase, thymidylat 91.5 0.3 1E-05 46.1 6.5 36 211-247 27-62 (236)
311 1q3t_A Cytidylate kinase; nucl 91.5 0.11 3.8E-06 49.0 3.5 25 209-233 14-38 (236)
312 2lkc_A Translation initiation 91.4 0.13 4.5E-06 45.6 3.8 26 209-234 6-31 (178)
313 2ce2_X GTPase HRAS; signaling 91.4 0.099 3.4E-06 45.5 2.9 22 213-234 5-26 (166)
314 2nzj_A GTP-binding protein REM 91.3 0.13 4.4E-06 45.5 3.5 24 211-234 4-27 (175)
315 3sop_A Neuronal-specific septi 91.2 0.1 3.5E-06 50.4 3.1 22 213-234 4-25 (270)
316 3end_A Light-independent proto 91.2 0.28 9.7E-06 48.2 6.4 41 209-251 39-79 (307)
317 1z2a_A RAS-related protein RAB 91.2 0.13 4.5E-06 45.0 3.5 24 211-234 5-28 (168)
318 4tmk_A Protein (thymidylate ki 91.1 0.33 1.1E-05 45.0 6.3 25 212-236 4-28 (213)
319 2pjz_A Hypothetical protein ST 91.1 0.11 3.7E-06 50.1 3.0 22 212-233 31-52 (263)
320 1nrj_B SR-beta, signal recogni 91.1 0.13 4.4E-06 47.6 3.5 26 209-234 10-35 (218)
321 3nh6_A ATP-binding cassette SU 91.1 0.1 3.4E-06 51.4 2.9 23 211-233 80-102 (306)
322 3kta_A Chromosome segregation 91.1 0.12 4.1E-06 46.4 3.2 22 212-233 27-48 (182)
323 1nij_A Hypothetical protein YJ 91.0 0.11 3.6E-06 51.7 3.0 25 210-234 3-27 (318)
324 1svi_A GTP-binding protein YSX 91.0 0.14 4.9E-06 46.2 3.7 25 210-234 22-46 (195)
325 2zts_A Putative uncharacterize 90.9 0.18 6.2E-06 47.6 4.5 49 210-261 29-77 (251)
326 2orw_A Thymidine kinase; TMTK, 90.9 0.14 4.9E-06 46.3 3.5 23 212-234 4-26 (184)
327 3con_A GTPase NRAS; structural 90.9 0.12 4.1E-06 46.6 3.0 23 212-234 22-44 (190)
328 2aka_B Dynamin-1; fusion prote 90.8 0.25 8.7E-06 48.2 5.6 42 193-234 8-49 (299)
329 3eph_A TRNA isopentenyltransfe 90.8 0.13 4.6E-06 52.2 3.5 22 212-233 3-24 (409)
330 2erx_A GTP-binding protein DI- 90.8 0.12 4.2E-06 45.3 3.0 23 212-234 4-26 (172)
331 2ck3_A ATP synthase subunit al 90.8 0.46 1.6E-05 49.7 7.6 100 196-300 152-271 (510)
332 1kao_A RAP2A; GTP-binding prot 90.8 0.12 4.3E-06 45.0 3.0 23 212-234 4-26 (167)
333 3q85_A GTP-binding protein REM 90.8 0.12 4.1E-06 45.4 2.9 22 212-233 3-24 (169)
334 1c1y_A RAS-related protein RAP 90.8 0.13 4.3E-06 45.0 3.0 22 213-234 5-26 (167)
335 3mfy_A V-type ATP synthase alp 90.7 0.54 1.8E-05 49.6 8.0 57 196-261 217-274 (588)
336 3fvq_A Fe(3+) IONS import ATP- 90.7 0.12 4.1E-06 52.0 3.1 22 212-233 31-52 (359)
337 1p5z_B DCK, deoxycytidine kina 90.7 0.093 3.2E-06 50.5 2.2 24 210-233 23-46 (263)
338 3q72_A GTP-binding protein RAD 90.7 0.12 4E-06 45.3 2.7 21 213-233 4-24 (166)
339 1r8s_A ADP-ribosylation factor 90.7 0.13 4.5E-06 44.9 3.0 21 214-234 3-23 (164)
340 2hxs_A RAB-26, RAS-related pro 90.7 0.2 6.9E-06 44.3 4.3 25 210-234 5-29 (178)
341 1ek0_A Protein (GTP-binding pr 90.7 0.13 4.4E-06 45.1 2.9 22 213-234 5-26 (170)
342 2bbs_A Cystic fibrosis transme 90.7 0.13 4.6E-06 50.2 3.3 23 211-233 64-86 (290)
343 1z08_A RAS-related protein RAB 90.7 0.13 4.4E-06 45.2 2.9 24 211-234 6-29 (170)
344 3f9v_A Minichromosome maintena 90.6 0.08 2.7E-06 57.5 1.8 21 213-233 329-349 (595)
345 3v9p_A DTMP kinase, thymidylat 90.6 0.3 1E-05 45.8 5.5 25 211-235 25-49 (227)
346 3pqc_A Probable GTP-binding pr 90.6 0.16 5.6E-06 45.7 3.7 25 210-234 22-46 (195)
347 1z0j_A RAB-22, RAS-related pro 90.6 0.13 4.5E-06 45.1 2.9 23 212-234 7-29 (170)
348 1m7b_A RND3/RHOE small GTP-bin 90.5 0.13 4.5E-06 46.1 2.9 25 210-234 6-30 (184)
349 2yv5_A YJEQ protein; hydrolase 90.5 0.2 6.8E-06 49.3 4.4 31 193-232 156-186 (302)
350 2r8r_A Sensor protein; KDPD, P 90.5 0.52 1.8E-05 43.9 6.9 23 212-234 7-29 (228)
351 3ihw_A Centg3; RAS, centaurin, 90.5 0.13 4.6E-06 46.2 2.9 24 211-234 20-43 (184)
352 2gj8_A MNME, tRNA modification 90.5 0.16 5.5E-06 45.1 3.4 23 212-234 5-27 (172)
353 1u8z_A RAS-related protein RAL 90.5 0.19 6.4E-06 43.9 3.8 23 212-234 5-27 (168)
354 3vr4_D V-type sodium ATPase su 90.4 0.21 7.2E-06 51.5 4.6 89 212-300 152-257 (465)
355 1fzq_A ADP-ribosylation factor 90.4 0.16 5.5E-06 45.5 3.4 25 210-234 15-39 (181)
356 2r9v_A ATP synthase subunit al 90.3 0.36 1.2E-05 50.4 6.3 96 196-300 165-276 (515)
357 1wms_A RAB-9, RAB9, RAS-relate 90.3 0.14 4.9E-06 45.3 3.0 24 211-234 7-30 (177)
358 1z47_A CYSA, putative ABC-tran 90.3 0.14 4.9E-06 51.4 3.2 22 212-233 42-63 (355)
359 1g16_A RAS-related protein SEC 90.3 0.14 4.8E-06 44.9 2.9 23 212-234 4-26 (170)
360 1ky3_A GTP-binding protein YPT 90.3 0.17 5.9E-06 44.9 3.5 25 210-234 7-31 (182)
361 3c5c_A RAS-like protein 12; GD 90.3 0.14 4.9E-06 46.1 2.9 24 211-234 21-44 (187)
362 4b3f_X DNA-binding protein smu 90.2 0.36 1.2E-05 53.0 6.6 62 191-263 193-254 (646)
363 2fn4_A P23, RAS-related protei 90.2 0.2 6.9E-06 44.4 3.9 25 210-234 8-32 (181)
364 2www_A Methylmalonic aciduria 90.2 0.17 5.9E-06 50.9 3.7 25 210-234 73-97 (349)
365 1r2q_A RAS-related protein RAB 90.2 0.15 5.2E-06 44.6 3.0 23 212-234 7-29 (170)
366 2cxx_A Probable GTP-binding pr 90.1 0.14 4.8E-06 46.0 2.8 22 213-234 3-24 (190)
367 3rlf_A Maltose/maltodextrin im 90.1 0.15 5.1E-06 51.7 3.2 22 212-233 30-51 (381)
368 2iwr_A Centaurin gamma 1; ANK 90.0 0.13 4.3E-06 45.8 2.3 24 211-234 7-30 (178)
369 1m2o_B GTP-binding protein SAR 90.0 0.15 5.2E-06 46.1 2.9 22 212-233 24-45 (190)
370 3tw8_B RAS-related protein RAB 90.0 0.14 4.8E-06 45.4 2.6 25 210-234 8-32 (181)
371 2qm8_A GTPase/ATPase; G protei 90.0 0.19 6.4E-06 50.4 3.7 24 210-233 54-77 (337)
372 2yyz_A Sugar ABC transporter, 89.9 0.17 5.9E-06 50.9 3.5 22 212-233 30-51 (359)
373 1z0f_A RAB14, member RAS oncog 89.9 0.16 5.5E-06 44.9 3.0 25 210-234 14-38 (179)
374 2cjw_A GTP-binding protein GEM 89.9 0.16 5.4E-06 46.1 2.9 23 211-233 6-28 (192)
375 3t1o_A Gliding protein MGLA; G 89.9 0.16 5.5E-06 45.8 3.0 23 211-233 14-36 (198)
376 3tui_C Methionine import ATP-b 89.9 0.18 6E-06 50.9 3.4 22 212-233 55-76 (366)
377 1upt_A ARL1, ADP-ribosylation 89.9 0.21 7.2E-06 43.8 3.7 24 211-234 7-30 (171)
378 2it1_A 362AA long hypothetical 89.9 0.18 6E-06 50.9 3.4 22 212-233 30-51 (362)
379 1lw7_A Transcriptional regulat 89.8 0.17 5.8E-06 51.3 3.4 23 211-233 170-192 (365)
380 1f6b_A SAR1; gtpases, N-termin 89.8 0.18 6.1E-06 46.0 3.2 22 212-233 26-47 (198)
381 3dzd_A Transcriptional regulat 89.8 0.11 3.6E-06 52.9 1.8 46 185-234 130-175 (368)
382 3bc1_A RAS-related protein RAB 89.8 0.16 5.6E-06 45.5 3.0 24 211-234 11-34 (195)
383 4dsu_A GTPase KRAS, isoform 2B 89.8 0.17 5.7E-06 45.4 3.0 23 212-234 5-27 (189)
384 2bme_A RAB4A, RAS-related prot 89.8 0.16 5.5E-06 45.4 2.8 25 210-234 9-33 (186)
385 2xau_A PRE-mRNA-splicing facto 89.8 0.64 2.2E-05 52.0 8.3 33 192-232 98-130 (773)
386 2y8e_A RAB-protein 6, GH09086P 89.8 0.16 5.5E-06 44.9 2.8 23 212-234 15-37 (179)
387 3oaa_A ATP synthase subunit al 89.8 0.77 2.6E-05 47.8 8.1 94 196-300 152-263 (513)
388 3d31_A Sulfate/molybdate ABC t 89.8 0.16 5.5E-06 51.0 3.0 22 212-233 27-48 (348)
389 1g29_1 MALK, maltose transport 89.7 0.17 5.7E-06 51.4 3.2 22 212-233 30-51 (372)
390 2oil_A CATX-8, RAS-related pro 89.7 0.17 5.8E-06 45.7 3.0 24 211-234 25-48 (193)
391 1pui_A ENGB, probable GTP-bind 89.7 0.11 3.8E-06 47.7 1.8 24 210-233 25-48 (210)
392 1tf7_A KAIC; homohexamer, hexa 89.7 0.55 1.9E-05 50.1 7.4 25 210-234 280-304 (525)
393 1mh1_A RAC1; GTP-binding, GTPa 89.7 0.17 5.9E-06 45.1 2.9 23 212-234 6-28 (186)
394 3gqb_B V-type ATP synthase bet 89.6 0.24 8.1E-06 51.1 4.1 90 211-300 147-260 (464)
395 1v43_A Sugar-binding transport 89.6 0.19 6.5E-06 50.9 3.4 22 212-233 38-59 (372)
396 3cbq_A GTP-binding protein REM 89.6 0.17 5.8E-06 46.1 2.8 23 210-232 22-44 (195)
397 3vr4_A V-type sodium ATPase ca 89.5 0.68 2.3E-05 49.0 7.6 48 196-252 222-269 (600)
398 3vkw_A Replicase large subunit 89.5 0.37 1.2E-05 49.7 5.5 26 208-233 158-183 (446)
399 2h92_A Cytidylate kinase; ross 89.5 0.16 5.4E-06 47.2 2.7 22 212-233 4-25 (219)
400 2qu8_A Putative nucleolar GTP- 89.5 0.23 7.8E-06 46.4 3.8 25 210-234 28-52 (228)
401 3bwd_D RAC-like GTP-binding pr 89.5 0.18 6.1E-06 44.9 2.9 24 211-234 8-31 (182)
402 2c61_A A-type ATP synthase non 89.5 0.24 8.1E-06 51.4 4.1 100 196-300 142-258 (469)
403 2ewv_A Twitching motility prot 89.5 0.21 7.1E-06 50.8 3.7 109 211-332 136-245 (372)
404 3t5g_A GTP-binding protein RHE 89.5 0.18 6E-06 44.9 2.8 25 210-234 5-29 (181)
405 2axn_A 6-phosphofructo-2-kinas 89.4 0.21 7.1E-06 53.2 3.8 25 210-234 34-58 (520)
406 2a9k_A RAS-related protein RAL 89.4 0.19 6.4E-06 44.8 3.0 24 211-234 18-41 (187)
407 4bas_A ADP-ribosylation factor 89.4 0.2 6.7E-06 45.4 3.1 26 209-234 15-40 (199)
408 2atv_A RERG, RAS-like estrogen 89.4 0.19 6.4E-06 45.6 3.0 24 211-234 28-51 (196)
409 2g6b_A RAS-related protein RAB 89.3 0.19 6.5E-06 44.6 3.0 24 211-234 10-33 (180)
410 1tq4_A IIGP1, interferon-induc 89.3 0.16 5.6E-06 52.1 2.8 24 210-233 68-91 (413)
411 4dkx_A RAS-related protein RAB 89.3 0.18 6.3E-06 46.8 2.9 22 213-234 15-36 (216)
412 2efe_B Small GTP-binding prote 89.3 0.19 6.5E-06 44.6 2.9 24 211-234 12-35 (181)
413 3kkq_A RAS-related protein M-R 89.3 0.27 9.2E-06 43.8 4.0 25 210-234 17-41 (183)
414 1oxx_K GLCV, glucose, ABC tran 89.3 0.15 5.1E-06 51.3 2.4 22 212-233 32-53 (353)
415 3dz8_A RAS-related protein RAB 89.3 0.19 6.5E-06 45.4 2.9 24 211-234 23-46 (191)
416 1u0l_A Probable GTPase ENGC; p 89.3 0.28 9.5E-06 48.2 4.3 32 193-233 160-191 (301)
417 3llu_A RAS-related GTP-binding 89.2 0.18 6.2E-06 45.8 2.8 23 211-233 20-42 (196)
418 2ew1_A RAS-related protein RAB 89.2 0.19 6.5E-06 46.1 2.9 24 211-234 26-49 (201)
419 2fh5_B SR-beta, signal recogni 89.2 0.2 6.9E-06 46.1 3.1 25 210-234 6-30 (214)
420 1zd9_A ADP-ribosylation factor 89.2 0.2 6.8E-06 45.1 3.0 23 212-234 23-45 (188)
421 3io3_A DEHA2D07832P; chaperone 89.2 0.51 1.7E-05 47.3 6.2 43 210-252 17-59 (348)
422 2bov_A RAla, RAS-related prote 89.1 0.26 8.8E-06 44.9 3.8 25 210-234 13-37 (206)
423 1gwn_A RHO-related GTP-binding 89.1 0.19 6.6E-06 46.1 2.9 24 211-234 28-51 (205)
424 2qnr_A Septin-2, protein NEDD5 89.1 0.17 5.7E-06 49.8 2.6 21 213-233 20-40 (301)
425 3iev_A GTP-binding protein ERA 89.1 0.21 7E-06 49.4 3.2 27 208-234 7-33 (308)
426 1vg8_A RAS-related protein RAB 89.1 0.2 6.8E-06 45.7 3.0 25 210-234 7-31 (207)
427 3gmt_A Adenylate kinase; ssgci 89.1 0.21 7.2E-06 46.8 3.1 23 212-234 9-31 (230)
428 1zbd_A Rabphilin-3A; G protein 89.1 0.2 6.9E-06 45.6 3.0 24 211-234 8-31 (203)
429 1ypw_A Transitional endoplasmi 89.1 0.24 8.3E-06 55.8 4.2 53 182-234 475-534 (806)
430 3oes_A GTPase rhebl1; small GT 89.0 0.2 6.7E-06 45.7 2.9 25 210-234 23-47 (201)
431 2fg5_A RAB-22B, RAS-related pr 89.0 0.2 6.8E-06 45.3 2.9 24 211-234 23-46 (192)
432 2gf9_A RAS-related protein RAB 89.0 0.2 7E-06 45.0 2.9 24 211-234 22-45 (189)
433 2g3y_A GTP-binding protein GEM 89.0 0.2 6.9E-06 46.4 2.9 23 211-233 37-59 (211)
434 1cp2_A CP2, nitrogenase iron p 89.0 0.49 1.7E-05 45.4 5.8 37 212-250 2-38 (269)
435 3reg_A RHO-like small GTPase; 89.0 0.21 7.1E-06 45.2 3.0 24 211-234 23-46 (194)
436 3gd7_A Fusion complex of cysti 88.9 0.2 6.8E-06 51.1 3.1 23 211-233 47-69 (390)
437 3ch4_B Pmkase, phosphomevalona 88.9 0.29 1E-05 44.7 3.8 25 209-233 9-33 (202)
438 2a5j_A RAS-related protein RAB 88.9 0.21 7.2E-06 45.0 3.0 23 212-234 22-44 (191)
439 3tqf_A HPR(Ser) kinase; transf 88.9 0.26 8.9E-06 43.7 3.3 22 212-233 17-38 (181)
440 1p9r_A General secretion pathw 88.9 0.37 1.3E-05 49.7 5.0 23 211-233 167-189 (418)
441 3tkl_A RAS-related protein RAB 88.8 0.21 7.2E-06 45.0 2.9 25 210-234 15-39 (196)
442 3iqw_A Tail-anchored protein t 88.8 0.56 1.9E-05 46.8 6.2 42 210-253 15-56 (334)
443 1ega_A Protein (GTP-binding pr 88.8 0.24 8.1E-06 48.7 3.4 25 210-234 7-31 (301)
444 2q3h_A RAS homolog gene family 88.7 0.21 7.2E-06 45.4 2.9 24 211-234 20-43 (201)
445 1z06_A RAS-related protein RAB 88.7 0.22 7.6E-06 44.7 3.0 24 211-234 20-43 (189)
446 1jwy_B Dynamin A GTPase domain 88.7 0.42 1.4E-05 47.1 5.2 41 193-234 7-47 (315)
447 3lxx_A GTPase IMAP family memb 88.7 0.26 8.8E-06 46.5 3.5 25 210-234 28-52 (239)
448 1ksh_A ARF-like protein 2; sma 88.7 0.27 9.3E-06 43.9 3.5 26 210-235 17-42 (186)
449 2p67_A LAO/AO transport system 88.7 0.25 8.5E-06 49.5 3.6 26 209-234 54-79 (341)
450 1f2t_A RAD50 ABC-ATPase; DNA d 88.7 0.29 1E-05 42.5 3.6 22 212-233 24-45 (149)
451 2o52_A RAS-related protein RAB 88.6 0.21 7.2E-06 45.5 2.8 24 211-234 25-48 (200)
452 2h17_A ADP-ribosylation factor 88.6 0.21 7.1E-06 44.6 2.7 23 212-234 22-44 (181)
453 3clv_A RAB5 protein, putative; 88.6 0.32 1.1E-05 43.9 4.0 24 211-234 7-30 (208)
454 2il1_A RAB12; G-protein, GDP, 88.5 0.21 7E-06 45.2 2.6 23 212-234 27-49 (192)
455 1x3s_A RAS-related protein RAB 88.5 0.23 8E-06 44.6 3.0 23 212-234 16-38 (195)
456 3thx_A DNA mismatch repair pro 88.5 0.42 1.4E-05 54.4 5.6 22 210-231 661-682 (934)
457 2gza_A Type IV secretion syste 88.4 0.19 6.5E-06 50.8 2.5 22 212-233 176-197 (361)
458 2rcn_A Probable GTPase ENGC; Y 88.4 0.24 8.2E-06 49.8 3.2 22 212-233 216-237 (358)
459 1zj6_A ADP-ribosylation factor 88.4 0.32 1.1E-05 43.6 3.7 24 210-233 15-38 (187)
460 4gzl_A RAS-related C3 botulinu 88.4 0.27 9.3E-06 45.0 3.4 24 211-234 30-53 (204)
461 2afh_E Nitrogenase iron protei 88.3 0.58 2E-05 45.5 5.9 37 212-250 3-39 (289)
462 2gf0_A GTP-binding protein DI- 88.3 0.32 1.1E-05 43.9 3.8 25 210-234 7-31 (199)
463 3k53_A Ferrous iron transport 88.3 0.28 9.5E-06 47.3 3.5 24 211-234 3-26 (271)
464 2bcg_Y Protein YP2, GTP-bindin 88.3 0.23 8E-06 45.3 2.9 24 211-234 8-31 (206)
465 1moz_A ARL1, ADP-ribosylation 88.3 0.22 7.7E-06 44.3 2.7 24 210-233 17-40 (183)
466 1fx0_A ATP synthase alpha chai 88.3 0.24 8.3E-06 51.7 3.2 85 210-300 162-264 (507)
467 1x6v_B Bifunctional 3'-phospho 88.2 0.31 1.1E-05 52.7 4.1 25 210-234 51-75 (630)
468 2j1l_A RHO-related GTP-binding 88.2 0.23 7.8E-06 45.9 2.8 24 211-234 34-57 (214)
469 2b6h_A ADP-ribosylation factor 88.2 0.29 9.9E-06 44.3 3.4 23 211-233 29-51 (192)
470 2obl_A ESCN; ATPase, hydrolase 88.1 0.24 8.3E-06 49.7 3.1 25 210-234 70-94 (347)
471 1bif_A 6-phosphofructo-2-kinas 88.1 0.28 9.4E-06 51.6 3.6 24 211-234 39-62 (469)
472 2p5s_A RAS and EF-hand domain 88.1 0.3 1E-05 44.4 3.5 25 210-234 27-51 (199)
473 1g8f_A Sulfate adenylyltransfe 88.1 0.34 1.1E-05 51.2 4.2 25 210-234 394-418 (511)
474 4hlc_A DTMP kinase, thymidylat 88.1 0.3 1E-05 45.0 3.4 24 212-235 3-26 (205)
475 4dhe_A Probable GTP-binding pr 88.1 0.23 7.7E-06 46.1 2.6 25 210-234 28-52 (223)
476 3cr8_A Sulfate adenylyltranfer 88.1 0.22 7.6E-06 53.3 2.8 24 211-234 369-392 (552)
477 2atx_A Small GTP binding prote 88.0 0.25 8.5E-06 44.6 2.8 23 212-234 19-41 (194)
478 2fv8_A H6, RHO-related GTP-bin 88.0 0.25 8.6E-06 45.2 2.9 23 212-234 26-48 (207)
479 2h57_A ADP-ribosylation factor 87.9 0.21 7.2E-06 44.9 2.3 24 212-235 22-45 (190)
480 3cph_A RAS-related protein SEC 87.9 0.26 9.1E-06 45.1 3.0 24 211-234 20-43 (213)
481 2fu5_C RAS-related protein RAB 87.9 0.16 5.6E-06 45.3 1.5 24 211-234 8-31 (183)
482 2j0v_A RAC-like GTP-binding pr 87.9 0.26 8.7E-06 45.3 2.8 25 210-234 8-32 (212)
483 2hup_A RAS-related protein RAB 87.8 0.26 9E-06 44.9 2.9 24 211-234 29-52 (201)
484 1m8p_A Sulfate adenylyltransfe 87.8 0.34 1.2E-05 52.1 4.1 25 210-234 395-419 (573)
485 3fdi_A Uncharacterized protein 87.7 0.3 1E-05 44.8 3.1 22 212-233 7-28 (201)
486 2gco_A H9, RHO-related GTP-bin 87.6 0.28 9.4E-06 44.7 2.9 23 212-234 26-48 (201)
487 3q3j_B RHO-related GTP-binding 87.6 0.28 9.6E-06 45.3 3.0 23 212-234 28-50 (214)
488 3kjh_A CO dehydrogenase/acetyl 87.6 0.6 2.1E-05 44.0 5.4 40 214-255 3-42 (254)
489 2pt7_A CAG-ALFA; ATPase, prote 87.5 0.21 7.2E-06 49.8 2.1 80 212-302 172-251 (330)
490 2qag_B Septin-6, protein NEDD5 87.5 0.25 8.6E-06 50.8 2.7 20 214-233 45-64 (427)
491 4dzz_A Plasmid partitioning pr 87.4 0.69 2.3E-05 42.1 5.5 40 212-253 2-42 (206)
492 3tmk_A Thymidylate kinase; pho 87.4 0.35 1.2E-05 44.9 3.4 25 211-235 5-29 (216)
493 3fkq_A NTRC-like two-domain pr 87.3 0.73 2.5E-05 46.7 6.1 41 208-250 140-181 (373)
494 2j9r_A Thymidine kinase; TK1, 87.2 0.55 1.9E-05 43.3 4.6 110 211-331 28-138 (214)
495 3zq6_A Putative arsenical pump 87.2 1 3.5E-05 44.6 7.0 44 211-256 14-57 (324)
496 2f7s_A C25KG, RAS-related prot 87.2 0.3 1E-05 45.0 2.8 24 211-234 25-48 (217)
497 2xtp_A GTPase IMAP family memb 87.1 0.36 1.2E-05 46.1 3.5 25 210-234 21-45 (260)
498 2npi_A Protein CLP1; CLP1-PCF1 87.1 0.25 8.6E-06 51.6 2.5 23 212-234 139-161 (460)
499 1c9k_A COBU, adenosylcobinamid 86.8 0.3 1E-05 43.9 2.5 20 214-233 2-21 (180)
500 3euj_A Chromosome partition pr 86.8 0.34 1.2E-05 50.7 3.3 22 212-233 30-51 (483)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4e-50 Score=439.51 Aligned_cols=343 Identities=16% Similarity=0.211 Sum_probs=259.4
Q ss_pred ccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhh--hhhhhccCCceEEEEeCCCC--CHHHHHHHH
Q 039283 187 YGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNK--DDRVQRHFQIKAWTCVSEDF--DVFTVSKSI 262 (600)
Q Consensus 187 vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~--~~~~~~~F~~~~wv~vs~~~--~~~~~l~~i 262 (600)
|||+.++++|.++|.... .+..++|+|+||||+||||||+++|+ +.++..+|+.++||++++.+ ++..++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 34679999999999999999999998 57888999999999999885 799999999
Q ss_pred HHHhhcCCC------CCcccHHHHHHHHHHHhCCC-cEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHHh
Q 039283 263 LNSIASDQC------TDKDDLNLLQEKLKKQLSGK-KFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVAE 335 (600)
Q Consensus 263 l~~l~~~~~------~~~~~~~~l~~~l~~~L~~k-~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~ 335 (600)
+.+++.... ....+.+.+...+++.|+++ ||||||||||+.+...|... +||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHH
Confidence 999986521 02335677889999999996 99999999998643345432 6999999999999998
Q ss_pred hcC-ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCCChhHHHHHHHhc
Q 039283 336 TMR-AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEIVLNAN 414 (600)
Q Consensus 336 ~~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~~l~~~ 414 (600)
.++ ....|+|++|+.++||+||.+.++... .++.+.+++.+|+++|+|+||||+++|+.|+.+ .. +|...+...
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhHHH
Confidence 876 346799999999999999999987643 246788999999999999999999999999776 32 333344433
Q ss_pred cccccCCCccchHHHHHhhhCCChhHHHHHH-----------HhccCCCCCcccHHHHHHHHHHc--CCcccccCCccHH
Q 039283 415 IWDLQEDKCDIIPALRVSYHFLPPQLKQCFA-----------YISLFPKDYEFEEEQIILLWTAE--GFLDQEYNGRKME 481 (600)
Q Consensus 415 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~-----------~ls~fp~~~~i~~~~Li~~Wiae--g~i~~~~~~~~~e 481 (600)
.+.. ....+.++|.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.....+.+.+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3332 2356889999999999999999999 999999999999 8899999 9998644466778
Q ss_pred HHHHHHHHHHhhCCCcccccC-CCCeEEEchHHHHHHHHHhccccEEEe-----cCCcccccccCCCCeeEEEEEeC
Q 039283 482 DLGRQFVRELHSRSLFQLSSK-DTSRFVMHDLINDLARWAAGELYFRVE-----DTLAGENQQKFSQSLRHFSYIRG 552 (600)
Q Consensus 482 ~~~~~~l~~L~~rsLl~~~~~-~~~~~~mH~lv~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~r~lsi~~~ 552 (600)
++++ ||++|+++|||++... +..+|+|||+||+||++++.++++... ..+.+......+...||++.+..
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~~~r~~~~~~~ 504 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLEIGNNNVSVPERHIPSHFQ 504 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHHHHHHTTSTTTSSCC-----------------
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccchhhhhhhh
Confidence 8777 9999999999998754 356899999999999999988765210 00111111224556788887654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.3e-40 Score=397.78 Aligned_cols=313 Identities=22% Similarity=0.344 Sum_probs=249.0
Q ss_pred CCCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhh-hccCC-ceEEEEeCCCCC--HH
Q 039283 181 VNEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRV-QRHFQ-IKAWTCVSEDFD--VF 256 (600)
Q Consensus 181 ~~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~-~~~F~-~~~wv~vs~~~~--~~ 256 (600)
..++.||||++++++|.++|.... +..++|+|+||||+||||||++++++.+. ..+|. .++|++++...+ ..
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 196 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL 196 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence 345679999999999999997543 46789999999999999999999987644 44565 566999988543 44
Q ss_pred HHHHHHHHHhhcCCC---CCcccHHHHHHHHHHHhCCC--cEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 257 TVSKSILNSIASDQC---TDKDDLNLLQEKLKKQLSGK--KFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 257 ~~l~~il~~l~~~~~---~~~~~~~~l~~~l~~~L~~k--~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
..+..++..+..... ....+.+.+.+.++..+.++ |+||||||+|+. ..|..+ .+||+||||||+.
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESST
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCH
Confidence 456677777765432 13567788999999999887 999999999864 344332 4789999999999
Q ss_pred HHHhh-cCccceeecCC-CCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCCChhHHHH
Q 039283 332 GVAET-MRAVSTKTLKE-LSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEI 409 (600)
Q Consensus 332 ~v~~~-~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~ 409 (600)
.++.. +.....+.+.+ |+.+++++||...++... +.+.+++++|+++|+|+||||+++|++|+.++ ..|..
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~ 340 (1249)
T 3sfz_A 268 SVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAY 340 (1249)
T ss_dssp TTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHH
T ss_pred HHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCCh-----hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHH
Confidence 88854 44567889996 999999999998884322 23346789999999999999999999998875 35777
Q ss_pred HHHhccccccC--------CCccchHHHHHhhhCCChhHHHHHHHhccCCCCCcccHHHHHHHHHHcCCcccccCCccHH
Q 039283 410 VLNANIWDLQE--------DKCDIIPALRVSYHFLPPQLKQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQEYNGRKME 481 (600)
Q Consensus 410 ~l~~~~~~~~~--------~~~~i~~~l~~sy~~L~~~~k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e 481 (600)
.++........ ....+..+|.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ +
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~ 408 (1249)
T 3sfz_A 341 YLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------T 408 (1249)
T ss_dssp HHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------H
Confidence 66554322111 114588999999999999999999999999999999999999999554 4
Q ss_pred HHHHHHHHHHhhCCCcccccCC-CCeEEEchHHHHHHHHHhcccc
Q 039283 482 DLGRQFVRELHSRSLFQLSSKD-TSRFVMHDLINDLARWAAGELY 525 (600)
Q Consensus 482 ~~~~~~l~~L~~rsLl~~~~~~-~~~~~mH~lv~~~a~~~~~~~~ 525 (600)
+.++.+|++|+++|||+....+ ..+|+||++||+|++..+.++.
T Consensus 409 ~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 409 EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 6688999999999999976532 3469999999999999987764
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.4e-40 Score=366.14 Aligned_cols=285 Identities=22% Similarity=0.278 Sum_probs=230.4
Q ss_pred cccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCc-eEEEEeCCCCCHHHHHHHHHH
Q 039283 186 VYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQI-KAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~~~~~~l~~il~ 264 (600)
.|||+.++++|.++|...+ ..++|+|+||||+||||||++++++.++..+|+. ++|+++++.++...++..++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 5999999999999997532 3689999999999999999999998888899997 889999999998888888887
Q ss_pred HhhcCC---CC-------CcccHHHHHHHHHHHh---CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 265 SIASDQ---CT-------DKDDLNLLQEKLKKQL---SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 265 ~l~~~~---~~-------~~~~~~~l~~~l~~~L---~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
.+.... .. ...+.+.+...+++.| .++|+||||||+|+ ...|+.+. +||+||||||+.
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd--~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCC--HHHHHHHH-------SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcCh--HHHHHhhC-------CCeEEEEeccCh
Confidence 654321 00 1124456677777766 68999999999988 35666542 689999999999
Q ss_pred HHHhhcCccceeecC------CCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCC-Ch
Q 039283 332 GVAETMRAVSTKTLK------ELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKD-DL 404 (600)
Q Consensus 332 ~v~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~-~~ 404 (600)
.++..+.....+.++ +|+.+||++||++.. +.. .. ++..+| |+|+||||+++|+.|+.++ +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~e---eL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----PQ---DLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----TT---THHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC----HH---HHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 888654443456677 999999999999884 221 11 223333 9999999999999999874 56
Q ss_pred hHHHHHHHhccccccCCCccchHHHHHhhhCCChhH-HHHHHHhccCCCCCcccHHHHHHHHHHcCCcccccCCccHHHH
Q 039283 405 NDWEIVLNANIWDLQEDKCDIIPALRVSYHFLPPQL-KQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQEYNGRKMEDL 483 (600)
Q Consensus 405 ~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~ 483 (600)
+.|... ....+..+|.+||+.||++. |.||++||+||+++.|+.+.++.+|+++| ++.
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eed 403 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSD 403 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHH
Confidence 778642 23569999999999999999 99999999999999999999999998876 134
Q ss_pred HHHHHHHHhhCCCcccccCCCCeEEEchHHHHHH
Q 039283 484 GRQFVRELHSRSLFQLSSKDTSRFVMHDLINDLA 517 (600)
Q Consensus 484 ~~~~l~~L~~rsLl~~~~~~~~~~~mH~lv~~~a 517 (600)
++.+|++|+++|||+... +..+|+||||+++++
T Consensus 404 Ae~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHh
Confidence 888999999999999853 467899999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=6.5e-37 Score=339.22 Aligned_cols=306 Identities=24% Similarity=0.370 Sum_probs=234.4
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhh-hccCC-ceEEEEeCCCCCHHHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRV-QRHFQ-IKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~-~~~F~-~~~wv~vs~~~~~~~~l~ 260 (600)
++.||||+.++++|.++|.... +..++|+|+||||+||||||..++++..+ ..+|+ .++|++++.. +...++.
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3569999999999999996532 45789999999999999999999987665 77895 7899999865 3444444
Q ss_pred HH---HHHhhcCC---CCCcccHHHHHHHHHHHhCC--CcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH
Q 039283 261 SI---LNSIASDQ---CTDKDDLNLLQEKLKKQLSG--KKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG 332 (600)
Q Consensus 261 ~i---l~~l~~~~---~~~~~~~~~l~~~l~~~L~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 332 (600)
.+ +..++... .....+.+.+...+...+.+ +++||||||+|+. ..+. .+ .+|++||||||+..
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~----~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLK----AF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHH----TT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHH----Hh---cCCCeEEEECCCcH
Confidence 44 33444211 11345677788888888876 7999999999863 2332 22 46899999999998
Q ss_pred HHhhcCccceeec---CCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCCCChhHHHH
Q 039283 333 VAETMRAVSTKTL---KELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEI 409 (600)
Q Consensus 333 v~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~ 409 (600)
++..+.. ..+.+ ++|+.+++++||.+.++... +...+.+.+|+++|+|+||||.++|+.++.++ ..|..
T Consensus 269 ~~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~~-----~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~ 340 (591)
T 1z6t_A 269 VTDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMKK-----ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEY 340 (591)
T ss_dssp GGTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSCG-----GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHH
T ss_pred HHHhcCC-CceEeecCCCCCHHHHHHHHHHHhCCCc-----ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHH
Confidence 8765432 23343 68999999999999885421 12235788999999999999999999998774 36877
Q ss_pred HHHhccccc--------cCCCccchHHHHHhhhCCChhHHHHHHHhccCCCCCcccHHHHHHHHHHcCCcccccCCccHH
Q 039283 410 VLNANIWDL--------QEDKCDIIPALRVSYHFLPPQLKQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQEYNGRKME 481 (600)
Q Consensus 410 ~l~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~~~~~~~e 481 (600)
.++...... .....++..++..||+.||++.|.||.+||+||+++.|+.+.+..+|.++ .
T Consensus 341 ~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~ 408 (591)
T 1z6t_A 341 YLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------T 408 (591)
T ss_dssp HHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------H
T ss_pred HHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------H
Confidence 666533221 11224688999999999999999999999999999999999999999543 2
Q ss_pred HHHHHHHHHHhhCCCcccccC-CCCeEEEchHHHHHHHHHhc
Q 039283 482 DLGRQFVRELHSRSLFQLSSK-DTSRFVMHDLINDLARWAAG 522 (600)
Q Consensus 482 ~~~~~~l~~L~~rsLl~~~~~-~~~~~~mH~lv~~~a~~~~~ 522 (600)
+.+..++++|+++|||+.... ...+|+||++||+|++....
T Consensus 409 ~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 EEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 457889999999999986542 23589999999999998843
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.77 E-value=1.9e-17 Score=170.34 Aligned_cols=292 Identities=14% Similarity=0.163 Sum_probs=181.3
Q ss_pred CCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC------CH
Q 039283 182 NEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF------DV 255 (600)
Q Consensus 182 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~------~~ 255 (600)
.+..|+||+.++++|.+++... +++.|+|++|+|||||++.+.+.. . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 4567999999999999998531 589999999999999999998642 1 6777765432 55
Q ss_pred HHHHHHHHHHhhc-----------------CCCCCcccHHHHHHHHHHHhCC-CcEEEEEecCCCCCh-------hhHHh
Q 039283 256 FTVSKSILNSIAS-----------------DQCTDKDDLNLLQEKLKKQLSG-KKFLLVLDDVWNENY-------NSWRA 310 (600)
Q Consensus 256 ~~~l~~il~~l~~-----------------~~~~~~~~~~~l~~~l~~~L~~-k~~LlVlDdv~~~~~-------~~~~~ 310 (600)
..++..+...+.. .......+...+.+.+.+..+. ++++|||||+++.+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6666666665432 0000123556666666665543 499999999976432 22332
Q ss_pred hcCCCCCCCCCcEEEEeccChHHHhhc-----------Cc-cceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHH
Q 039283 311 LSCPFGAGASGSKIVVTHRNQGVAETM-----------RA-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAE 378 (600)
Q Consensus 311 l~~~l~~~~~gs~IlvTtR~~~v~~~~-----------~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~ 378 (600)
+...+. ..++.++|+|++.......+ +. ...+.+.+|+.+|+.+++......... ..+ .+.+.
T Consensus 155 L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~-~~~---~~~~~ 229 (350)
T 2qen_A 155 FAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL-DVP---ENEIE 229 (350)
T ss_dssp HHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHH
T ss_pred HHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHH
Confidence 322211 12478899998876431111 11 247899999999999999875422111 112 25678
Q ss_pred HHHHhhcCchhHHHHHHhhhcCCCChhHHHH-HHHhccccccCCCccchHHHHHhhhCC---ChhHHHHHHHhccCCCCC
Q 039283 379 KIVKKCKGLPLAAKTLGGLLRGKDDLNDWEI-VLNANIWDLQEDKCDIIPALRVSYHFL---PPQLKQCFAYISLFPKDY 454 (600)
Q Consensus 379 ~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~-~l~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~~f~~ls~fp~~~ 454 (600)
.|+..|+|+|+++..++..+....+...+.. ..+ .+...+.-.+..+ ++..+..+..+|. ..
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~- 295 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLE-----------VAKGLIMGELEELRRRSPRYVDILRAIAL--GY- 295 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TC-
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHH-----------HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CC-
Confidence 8999999999999999876432212211111 111 0111122222233 7889999999998 22
Q ss_pred cccHHHHHHHHHHcCCcccccCCccHHHHHHHHHHHHhhCCCcccccCCCCeEEE-chHHHHHHH
Q 039283 455 EFEEEQIILLWTAEGFLDQEYNGRKMEDLGRQFVRELHSRSLFQLSSKDTSRFVM-HDLINDLAR 518 (600)
Q Consensus 455 ~i~~~~Li~~Wiaeg~i~~~~~~~~~e~~~~~~l~~L~~rsLl~~~~~~~~~~~m-H~lv~~~a~ 518 (600)
++...+........ ++ ........+++.|++.+||.... ..|.+ |++++++.+
T Consensus 296 -~~~~~l~~~~~~~~------~~-~~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 296 -NRWSLIRDYLAVKG------TK-IPEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp -CSHHHHHHHHHHTT------CC-CCHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred -CCHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 34455544322210 01 11345778999999999998652 45654 889998864
No 6
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.75 E-value=1.2e-17 Score=176.01 Aligned_cols=313 Identities=13% Similarity=0.012 Sum_probs=187.0
Q ss_pred CCccccccchHHHHHHHH-hcCCCCCCCCceEEEE--EccCCChHHHHHHHHhhhhhhhc---cCC-ceEEEEeCCCCCH
Q 039283 183 EDEVYGREKDKEAIVELL-LRDDLRADDGFSVVSI--KGLGGVGKTTLAQLVNKDDRVQR---HFQ-IKAWTCVSEDFDV 255 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L-~~~~~~~~~~~~vv~I--~G~~GiGKTtLA~~v~~~~~~~~---~F~-~~~wv~vs~~~~~ 255 (600)
+..|+||+.++++|.++| .............+.| +|++|+|||+||+.+++...... .+. ..+|+++....+.
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSH
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCH
Confidence 367999999999999998 4321000023457777 99999999999999987543211 122 3568887777788
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC--CCcEEEEEecCCCCC------hhhHHhhcCCCCC---CC--CCc
Q 039283 256 FTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNEN------YNSWRALSCPFGA---GA--SGS 322 (600)
Q Consensus 256 ~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVlDdv~~~~------~~~~~~l~~~l~~---~~--~gs 322 (600)
..++..++..++........+...+...+.+.+. +++++|||||++... ...+..+...+.. .+ .+.
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v 180 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRI 180 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceE
Confidence 9999999999876533223345556666666664 789999999997632 2334433332221 12 455
Q ss_pred EEEEeccChHHHhhc--------Cc-cceeecCCCCHHHHHHHHHHhh---cCCCCCCCChhHHHHHHHHHHhhc-----
Q 039283 323 KIVVTHRNQGVAETM--------RA-VSTKTLKELSDDDCLRVLIQHS---LGARDFNIPQSLKEVAEKIVKKCK----- 385 (600)
Q Consensus 323 ~IlvTtR~~~v~~~~--------~~-~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~l~~~~~~I~~~~~----- 385 (600)
.+|+||+...+...+ .. ...+.+.+++.++++++|...+ +... ..+ .+....|++.|+
T Consensus 181 ~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~~~ 255 (412)
T 1w5s_A 181 GFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWE---PRHLELISDVYGEDKGG 255 (412)
T ss_dssp EEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCC---HHHHHHHHHHHCGGGTS
T ss_pred EEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCC---hHHHHHHHHHHHHhccC
Confidence 688888755432111 11 1239999999999999997653 2211 112 356778889999
Q ss_pred -CchhHHHHHHhhhc-----CC---CChhHHHHHHHhccccccCCCccchHHHHHhhhCCChhHHHHHHHhccCC--CCC
Q 039283 386 -GLPLAAKTLGGLLR-----GK---DDLNDWEIVLNANIWDLQEDKCDIIPALRVSYHFLPPQLKQCFAYISLFP--KDY 454 (600)
Q Consensus 386 -GlPLai~~~~~~L~-----~~---~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~ls~fp--~~~ 454 (600)
|+|..+..+..... .. -+.+.+..+...... ...+..++..||++.+.++..++.+. .+.
T Consensus 256 ~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 256 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred CCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 99976655543211 11 122333333322110 22344567889999999999888753 233
Q ss_pred cccHHHHHHHHH--H-cCCcccccCCccHHHHHHHHHHHHhhCCCcccccC---CCCeEEEchHH
Q 039283 455 EFEEEQIILLWT--A-EGFLDQEYNGRKMEDLGRQFVRELHSRSLFQLSSK---DTSRFVMHDLI 513 (600)
Q Consensus 455 ~i~~~~Li~~Wi--a-eg~i~~~~~~~~~e~~~~~~l~~L~~rsLl~~~~~---~~~~~~mH~lv 513 (600)
.++...+...+. + .- .. ...........++++|+..|||..... ...+|++|.+.
T Consensus 327 ~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTM-YN---VKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp SBCHHHHHHHHHHHHHHH-SC---CCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred CccHHHHHHHHHHHHHhh-cC---CCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 455555544432 2 10 00 011123456788999999999976542 23445555544
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.74 E-value=1.4e-16 Score=164.13 Aligned_cols=292 Identities=14% Similarity=0.119 Sum_probs=174.5
Q ss_pred CCCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC-----CCHH
Q 039283 182 NEDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED-----FDVF 256 (600)
Q Consensus 182 ~~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-----~~~~ 256 (600)
.+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++.+.+.. .. ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---------~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---------PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---------SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---------CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCCHH
Confidence 45679999999999999 721 599999999999999999998743 21 2578887642 3445
Q ss_pred HHHHHHHHHhhc-------------C-----CCC----------CcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh---
Q 039283 257 TVSKSILNSIAS-------------D-----QCT----------DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY--- 305 (600)
Q Consensus 257 ~~l~~il~~l~~-------------~-----~~~----------~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~--- 305 (600)
..+..+.+.+.. . .+. .......+.+.+.+... ++++|||||+++.+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555555444321 0 000 02344555555554433 499999999976321
Q ss_pred hhHHhhcCCCCCCCCCcEEEEeccChHHHhh----------c-Cc-cceeecCCCCHHHHHHHHHHhhcCCCCCCCChhH
Q 039283 306 NSWRALSCPFGAGASGSKIVVTHRNQGVAET----------M-RA-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSL 373 (600)
Q Consensus 306 ~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~~----------~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l 373 (600)
..+..+...+....++..+|+|++....... . +. ...+.+.+|+.+++.+++......... ... .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~-~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI-DFK-D- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC-CCC-C-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC-CCC-c-
Confidence 1222222222111246789999998653211 1 11 257899999999999999875421111 111 1
Q ss_pred HHHHHHHHHhhcCchhHHHHHHhhhcCCCChhHHHHH-HHhccccccCCCccchHHHH-Hhh--hCCChhHHHHHHHhcc
Q 039283 374 KEVAEKIVKKCKGLPLAAKTLGGLLRGKDDLNDWEIV-LNANIWDLQEDKCDIIPALR-VSY--HFLPPQLKQCFAYISL 449 (600)
Q Consensus 374 ~~~~~~I~~~~~GlPLai~~~~~~L~~~~~~~~w~~~-l~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~~f~~ls~ 449 (600)
...|+..|+|+|+++..++..+....+...|..- .+.. ...+..-+. +.+ ..||+..+..+..+|+
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA-------KKLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------HHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------HHHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 1789999999999999998876433232233211 1100 000111122 111 1688899999999998
Q ss_pred CCCCCcccHHHHHHHHH-HcCCcccccCCccHHHHHHHHHHHHhhCCCcccccCCCCeEE-EchHHHHHH
Q 039283 450 FPKDYEFEEEQIILLWT-AEGFLDQEYNGRKMEDLGRQFVRELHSRSLFQLSSKDTSRFV-MHDLINDLA 517 (600)
Q Consensus 450 fp~~~~i~~~~Li~~Wi-aeg~i~~~~~~~~~e~~~~~~l~~L~~rsLl~~~~~~~~~~~-mH~lv~~~a 517 (600)
+. +...+....- ..|. .........+++.|++.+||.... ..|. .|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 21 4444432210 1120 011344678999999999998653 3465 589999874
No 8
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.69 E-value=3.7e-17 Score=138.15 Aligned_cols=79 Identities=28% Similarity=0.391 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcc--ccCChHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 039283 11 SVELLIEKLASKGLELFTRHEKLKADLIKWKGMLEMIQAVLADAEDR--KTKDKAVKKWLDNLQNLAYDAEDVLDELETE 88 (600)
Q Consensus 11 ~~~~l~~~l~~~~~~~~~~~~~v~~~~~~l~~~l~~i~~~L~~ae~~--~~~~~~~~~Wl~~lr~~ayd~eD~lD~~~~~ 88 (600)
+++.+++||.+.+..++.+..||++++++|+++|++|++||.+|+.+ +..|+.++.|+++||++|||+|||||+|.|+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567788888888899999999999999999999999999999987 5679999999999999999999999999998
Q ss_pred H
Q 039283 89 A 89 (600)
Q Consensus 89 ~ 89 (600)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 6
No 9
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.59 E-value=9.2e-14 Score=144.76 Aligned_cols=291 Identities=12% Similarity=-0.006 Sum_probs=181.2
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc----c--CCceEEEEeCCCC-CHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR----H--FQIKAWTCVSEDF-DVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~----~--F~~~~wv~vs~~~-~~~ 256 (600)
..++||+.++++|.+++.... ..+..+.+.|+|++|+|||+||+.+++...... . ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFV--KNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHH--TTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 679999999999998885421 123456899999999999999999987532221 1 2345788877766 888
Q ss_pred HHHHHHHHHhhcCCC-CCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh----hh-HHhhcCCCCCCCCCcEEEEeccC
Q 039283 257 TVSKSILNSIASDQC-TDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY----NS-WRALSCPFGAGASGSKIVVTHRN 330 (600)
Q Consensus 257 ~~l~~il~~l~~~~~-~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~----~~-~~~l~~~l~~~~~gs~IlvTtR~ 330 (600)
.++..++..+.+... ........+...+...+..++.+|||||++.... .. +..+.... .+..||+||+.
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~ 173 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSS
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECC
Confidence 899999988843321 1233345666777778877666999999965321 12 33333322 57788888886
Q ss_pred hHHHhhc-----Cc-cceeecCCCCHHHHHHHHHHhhcC-CCCCCCChhHHHHHHHHHHhhc---Cchh-HHHHHHhhh-
Q 039283 331 QGVAETM-----RA-VSTKTLKELSDDDCLRVLIQHSLG-ARDFNIPQSLKEVAEKIVKKCK---GLPL-AAKTLGGLL- 398 (600)
Q Consensus 331 ~~v~~~~-----~~-~~~~~l~~L~~~ea~~Lf~~~a~~-~~~~~~~~~l~~~~~~I~~~~~---GlPL-ai~~~~~~L- 398 (600)
......+ .. ...+.+.+++.++..++|...+.. ......++ +....|++.|+ |.|. ++..+-...
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 5321111 11 138999999999999999987531 11112222 45667777887 9887 444333322
Q ss_pred -cC---CCChhHHHHHHHhccccccCCCccchHHHHHhhhCCChhHHHHHHHhccCCCCCcccHHHHHHHHHHcCCcccc
Q 039283 399 -RG---KDDLNDWEIVLNANIWDLQEDKCDIIPALRVSYHFLPPQLKQCFAYISLFPKDYEFEEEQIILLWTAEGFLDQE 474 (600)
Q Consensus 399 -~~---~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~ls~fp~~~~i~~~~Li~~Wiaeg~i~~~ 474 (600)
+. .-+.+.+..+++... ...+..++..|+++.+..+..++....+..+. ......--..| .
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~--- 315 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q--- 315 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C---
T ss_pred HhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C---
Confidence 21 224566666554421 23466778899999888888777611101111 11111111122 1
Q ss_pred cCCccHHHHHHHHHHHHhhCCCcccc
Q 039283 475 YNGRKMEDLGRQFVRELHSRSLFQLS 500 (600)
Q Consensus 475 ~~~~~~e~~~~~~l~~L~~rsLl~~~ 500 (600)
..........+++.|...|++...
T Consensus 316 --~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 316 --KPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp --CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred --CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 112245578899999999999864
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.59 E-value=1.9e-13 Score=142.52 Aligned_cols=297 Identities=12% Similarity=0.034 Sum_probs=188.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhcc-CCceEEEEeCCCCCHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH-FQIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~l~~i 262 (600)
+.++||+.++++|.+++........+..+.+.|+|++|+|||||++.++.... .. -...+|++++...+...++..+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK--DKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT--TSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHh--hhcCeeEEEEeCccCCCHHHHHHHH
Confidence 56999999999999998652110112334899999999999999999987432 22 1245678877777888999999
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhC--CCcEEEEEecCCCCChhhHHhhcCCCCCCC----CCcEEEEeccChHHHhh
Q 039283 263 LNSIASDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNENYNSWRALSCPFGAGA----SGSKIVVTHRNQGVAET 336 (600)
Q Consensus 263 l~~l~~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~----~gs~IlvTtR~~~v~~~ 336 (600)
+..++............+...+...+. +++.+||||+++..+......+...+.... .+..||++|+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 998875433233445566666666554 678999999998776666666655554321 36778888776543332
Q ss_pred cC-------ccceeecCCCCHHHHHHHHHHhhcCCC-CCCCChhHHHHHHHHHHhh---------cCchhHHHHHHhhhc
Q 039283 337 MR-------AVSTKTLKELSDDDCLRVLIQHSLGAR-DFNIPQSLKEVAEKIVKKC---------KGLPLAAKTLGGLLR 399 (600)
Q Consensus 337 ~~-------~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~l~~~~~~I~~~~---------~GlPLai~~~~~~L~ 399 (600)
+. ....+.+.+++.++..+++...+.... ....+ .+....|++.+ +|.|..+..+.....
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 22 123699999999999999987753210 11122 35677888888 798865544433221
Q ss_pred ------CC--CChhHHHHHHHhccccccCCCccchHHHHHhhhCCChhHHHHHHHhccCC---CCCcccHHHHHHHHHH-
Q 039283 400 ------GK--DDLNDWEIVLNANIWDLQEDKCDIIPALRVSYHFLPPQLKQCFAYISLFP---KDYEFEEEQIILLWTA- 467 (600)
Q Consensus 400 ------~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~ls~fp---~~~~i~~~~Li~~Wia- 467 (600)
.. -+.+....+..... ...+.-.+..||++.+.++..++.+. .+..+....+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 11 12233333332211 11223446778999998888887654 2224566666555433
Q ss_pred ---cCCcccccCCccHHHHHHHHHHHHhhCCCccccc
Q 039283 468 ---EGFLDQEYNGRKMEDLGRQFVRELHSRSLFQLSS 501 (600)
Q Consensus 468 ---eg~i~~~~~~~~~e~~~~~~l~~L~~rsLl~~~~ 501 (600)
.|.. .-.......++++|...|+|....
T Consensus 322 ~~~~~~~------~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 322 CEEYGER------PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHHTTCC------CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHcCCC------CCCHHHHHHHHHHHHhCCCeEEee
Confidence 1211 112345778999999999998753
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=1.6e-13 Score=142.89 Aligned_cols=296 Identities=14% Similarity=0.055 Sum_probs=182.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc---c-CCceEEEEeCCCCCHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR---H-FQIKAWTCVSEDFDVFTVS 259 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~---~-F~~~~wv~vs~~~~~~~~l 259 (600)
..++||+.+++.|.+++...- ..+..+.+.|+|++|+|||+||+.+++...... . -...+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~--~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPAL--RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGT--SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH--cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 679999999999999985431 123456899999999999999999987532210 1 1245688888888899999
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHHh--CCCcEEEEEecCCCCChh-----hHHhhcCCCCCC--CCCcEEEEeccC
Q 039283 260 KSILNSIASDQCTDKDDLNLLQEKLKKQL--SGKKFLLVLDDVWNENYN-----SWRALSCPFGAG--ASGSKIVVTHRN 330 (600)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~l~~~l~~~L--~~k~~LlVlDdv~~~~~~-----~~~~l~~~l~~~--~~gs~IlvTtR~ 330 (600)
..++..++........+...+...+...+ .+++.+||||+++..... .+..+....... ..+..+|+||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99999997654333444566666666666 356899999999653221 122222222111 345677777766
Q ss_pred hHHHhhc-----Ccc--ceeecCCCCHHHHHHHHHHhhcCC-CCCCCChhHHHHHHHHHHhhc---CchhH-HHHHHhhh
Q 039283 331 QGVAETM-----RAV--STKTLKELSDDDCLRVLIQHSLGA-RDFNIPQSLKEVAEKIVKKCK---GLPLA-AKTLGGLL 398 (600)
Q Consensus 331 ~~v~~~~-----~~~--~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~l~~~~~~I~~~~~---GlPLa-i~~~~~~L 398 (600)
......+ ... ..+.+.+++.++..+++...+... .....++ +....|++.++ |.|.. +..+..+.
T Consensus 177 ~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~ 253 (387)
T 2v1u_A 177 LGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAG 253 (387)
T ss_dssp STTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 5221111 112 478999999999999998774310 1111222 44667777887 99943 33333222
Q ss_pred c-----CC--CChhHHHHHHHhccccccCCCccchHHHHHhhhCCChhHHHHHHHhc-cCCCCCcccHHHHHHHHHH---
Q 039283 399 R-----GK--DDLNDWEIVLNANIWDLQEDKCDIIPALRVSYHFLPPQLKQCFAYIS-LFPKDYEFEEEQIILLWTA--- 467 (600)
Q Consensus 399 ~-----~~--~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~ls-~fp~~~~i~~~~Li~~Wia--- 467 (600)
. .. -+.+.+..++.... ...+.-++..||++.+..+..+. ++.....+....+.+....
T Consensus 254 ~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (387)
T 2v1u_A 254 EIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTS 323 (387)
T ss_dssp HHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 1 11 24455555544321 22456678899999888877666 4433234555544443211
Q ss_pred -cCCcccccCCccHHHHHHHHHHHHhhCCCcccc
Q 039283 468 -EGFLDQEYNGRKMEDLGRQFVRELHSRSLFQLS 500 (600)
Q Consensus 468 -eg~i~~~~~~~~~e~~~~~~l~~L~~rsLl~~~ 500 (600)
.| . .......+..+++.|...|++...
T Consensus 324 ~~~-~-----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 324 TLG-L-----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HTT-C-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hcC-C-----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 22 1 112245678899999999999864
No 12
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.53 E-value=2.8e-13 Score=140.90 Aligned_cols=297 Identities=14% Similarity=0.078 Sum_probs=176.3
Q ss_pred CCccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhcc-CCceEEEEeCCCCCHHHHHHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH-FQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~-F~~~~wv~vs~~~~~~~~l~~ 261 (600)
+..|+||+.+++.|.+++.... ..+....+.|+|++|+||||||+.+++....... -...+|+++....+...++..
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~--~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 96 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLY--REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLAD 96 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGG--GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHH--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHH
Confidence 3679999999999999986421 1234568999999999999999999874322110 224568887766677788888
Q ss_pred HHHHhhcCCCCCcccHHHHHHHHHHHhC--CCcEEEEEecCCCCC----hhhHHhhcCCCCC-CCCCcEEEEeccChHHH
Q 039283 262 ILNSIASDQCTDKDDLNLLQEKLKKQLS--GKKFLLVLDDVWNEN----YNSWRALSCPFGA-GASGSKIVVTHRNQGVA 334 (600)
Q Consensus 262 il~~l~~~~~~~~~~~~~l~~~l~~~L~--~k~~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~IlvTtR~~~v~ 334 (600)
++..++........+.......+.+.+. +++.+||||+++... ...+..+...+.. ...+..+|+||+.....
T Consensus 97 i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~ 176 (386)
T 2qby_A 97 LLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFV 176 (386)
T ss_dssp HTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGG
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChH
Confidence 8887765433223345555566666554 458999999995421 2233333222211 23456778888765432
Q ss_pred hhcC-----c--cceeecCCCCHHHHHHHHHHhhcCC-CCCCCChhHHHHHHHHHHhhc---CchhHHHHH-Hhhhc---
Q 039283 335 ETMR-----A--VSTKTLKELSDDDCLRVLIQHSLGA-RDFNIPQSLKEVAEKIVKKCK---GLPLAAKTL-GGLLR--- 399 (600)
Q Consensus 335 ~~~~-----~--~~~~~l~~L~~~ea~~Lf~~~a~~~-~~~~~~~~l~~~~~~I~~~~~---GlPLai~~~-~~~L~--- 399 (600)
..+. . ...+.+.+++.++..+++.+.+... ...... .+....|++.++ |.|..+..+ .....
T Consensus 177 ~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 177 DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 2221 1 1579999999999999998764211 111222 255667777777 999844333 32221
Q ss_pred --C--CCChhHHHHHHHhccccccCCCccchHHHHHhhhCCChhHHHHHHHhccCCC-C-CcccHHHHHHHH--HHc--C
Q 039283 400 --G--KDDLNDWEIVLNANIWDLQEDKCDIIPALRVSYHFLPPQLKQCFAYISLFPK-D-YEFEEEQIILLW--TAE--G 469 (600)
Q Consensus 400 --~--~~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~ls~fp~-~-~~i~~~~Li~~W--iae--g 469 (600)
. .-+.+....++... ....+.-++..||+..+..+..++.+.+ + ..+....+.... +++ |
T Consensus 254 ~~~~~~i~~~~v~~a~~~~----------~~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 254 RMKDTKVKEEYVYMAKEEI----------ERDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp HTTCSSCCHHHHHHHHHHH----------HHHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred hcCCCccCHHHHHHHHHHH----------hhchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 1 12344444444332 1234666778899988888877774321 1 223333332221 111 2
Q ss_pred CcccccCCccHHHHHHHHHHHHhhCCCcccc
Q 039283 470 FLDQEYNGRKMEDLGRQFVRELHSRSLFQLS 500 (600)
Q Consensus 470 ~i~~~~~~~~~e~~~~~~l~~L~~rsLl~~~ 500 (600)
. ..........+++.|...|++...
T Consensus 324 ~------~~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 324 V------EAVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp C------CCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred C------CCCCHHHHHHHHHHHHhCCCEEEE
Confidence 1 111234567789999999999764
No 13
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.40 E-value=4.6e-12 Score=122.52 Aligned_cols=198 Identities=16% Similarity=0.118 Sum_probs=121.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++||+..++.|..++.... ....+.|+|++|+||||||+.+++.......+.. ........ ...+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDN-CREIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHH-HHHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHH-HHHHh
Confidence 359999999999999996542 2358899999999999999999874322111100 00000000 00110
Q ss_pred HHh-----hcCCCCCcccHHHHHHHHHHH----hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHH
Q 039283 264 NSI-----ASDQCTDKDDLNLLQEKLKKQ----LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVA 334 (600)
Q Consensus 264 ~~l-----~~~~~~~~~~~~~l~~~l~~~----L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~ 334 (600)
... ..... .....+.....+... ..+++.+|||||++..+...+..+...+.....+..+|+||+.....
T Consensus 91 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETT-CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCc-ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 00000 111222222222221 13568999999998776677777766665555678888888764321
Q ss_pred --hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh
Q 039283 335 --ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 398 (600)
Q Consensus 335 --~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L 398 (600)
........+.+.+++.++..+++.+.+..... ..+ .+....|++.|+|+|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11123468999999999999999887643221 122 2567889999999999988776543
No 14
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.32 E-value=3.6e-11 Score=114.53 Aligned_cols=186 Identities=13% Similarity=0.084 Sum_probs=116.8
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCC-ceEEEEeCCCCCHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ-IKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l~~i 262 (600)
..++|++..++.|.+++.... .+.+.|+|++|+|||+||+.+++.... ..+. ..+.++.+.......+.. .
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~ 88 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRH-K 88 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHH-H
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHH-H
Confidence 458999999999999996542 234899999999999999999874321 1122 233444433333222211 1
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHH--hhcCcc
Q 039283 263 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVA--ETMRAV 340 (600)
Q Consensus 263 l~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~--~~~~~~ 340 (600)
+..+..... ...+++.+|||||++.........+...+.....++.+|+||+..... ......
T Consensus 89 ~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 89 IKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp HHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 111111000 112578999999998776656666655554445677888888765311 111233
Q ss_pred ceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHh
Q 039283 341 STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 396 (600)
Q Consensus 341 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~ 396 (600)
..+.+.+++.++..+++.+.+..... ..+ .+....|++.++|+|..+..+..
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~l~ 205 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGV-KIT---EDGLEALIYISGGDFRKAINALQ 205 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 58899999999999999877642111 112 25677888999999996554433
No 15
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.21 E-value=5.5e-11 Score=120.63 Aligned_cols=268 Identities=16% Similarity=0.113 Sum_probs=146.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|++..++.+..++..... .......+.|+|++|+|||+||+.+++.. .. ..++++.+.....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~~--~~---~~~~~~~~~~~~~-------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHEL--GV---NLRVTSGPAIEKP-------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHHH--TC---CEEEECTTTCCSH--------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEeccccCCh--------
Confidence 4699999999998888753110 01233578899999999999999998632 11 2234443322111
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC------------------CCCcEEE
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG------------------ASGSKIV 325 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~Il 325 (600)
..+...+...+ .++.+|+||++..........+...+... .++..+|
T Consensus 78 --------------~~l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 78 --------------GDLAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp --------------HHHHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred --------------HHHHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 11111111111 35678999999776544444433222110 1235566
Q ss_pred EeccChH-HHhh-cCcc-ceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhhcCC-
Q 039283 326 VTHRNQG-VAET-MRAV-STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLLRGK- 401 (600)
Q Consensus 326 vTtR~~~-v~~~-~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L~~~- 401 (600)
.||.... +... .... ..+.+.+++.++...++.+.+..... ..+ .+....|++.++|+|..+..+...+...
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV-RIT---EEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 6665432 1111 1122 57899999999999999887643221 222 2567889999999998887766554321
Q ss_pred -------CChhHHHHHHHhccccccCCCccchHHHHHhhhCCChhHHHHHHHhc-cCCCC----------CcccHHHHHH
Q 039283 402 -------DDLNDWEIVLNANIWDLQEDKCDIIPALRVSYHFLPPQLKQCFAYIS-LFPKD----------YEFEEEQIIL 463 (600)
Q Consensus 402 -------~~~~~w~~~l~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~~f~~ls-~fp~~----------~~i~~~~Li~ 463 (600)
-+.+....+.... ...+..|+...+..+..+. .|..+ ..+++..+.+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 1223333333221 1112334444444443322 22211 0123333322
Q ss_pred ----HHHHcCCcccccCCccHHHHHHHHHH-HHhhCCCccc
Q 039283 464 ----LWTAEGFLDQEYNGRKMEDLGRQFVR-ELHSRSLFQL 499 (600)
Q Consensus 464 ----~Wiaeg~i~~~~~~~~~e~~~~~~l~-~L~~rsLl~~ 499 (600)
+-+..|++.....+....+.|.+||+ ++.+|+|||+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 24567888765566777888999997 8999999885
No 16
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=2.8e-10 Score=115.22 Aligned_cols=188 Identities=16% Similarity=0.192 Sum_probs=116.5
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|++..++.|.+++... ..+.+.|+|++|+|||++|+.+++...........++++.+..... +.++.++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~i~~~~ 93 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG------NMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI-DVVRNQI 93 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH-HHHHTHH
T ss_pred HHHHCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh-HHHHHHH
Confidence 45899999999999998653 2233899999999999999999874321111112334443332222 1222222
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHh-CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHH--HhhcCcc
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQL-SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGV--AETMRAV 340 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v--~~~~~~~ 340 (600)
..+.... ..+ .+++.+||+||++......+..+...+.....++.+|+||....- .......
T Consensus 94 ~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~ 158 (323)
T 1sxj_B 94 KHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQC 158 (323)
T ss_dssp HHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhc
Confidence 2221100 011 356899999999877666666665555444467788888866421 1112234
Q ss_pred ceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHHhh
Q 039283 341 STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLGGL 397 (600)
Q Consensus 341 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~~~ 397 (600)
..+.+.+++.++..+++...+..... ..+ .+.+..|++.|+|.|. ++..+...
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~r~a~~~l~~~ 212 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDV-KYT---NDGLEAIIFTAEGDMRQAINNLQST 212 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 58999999999999999876532111 112 2567889999999995 45555433
No 17
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.99 E-value=2.6e-09 Score=108.15 Aligned_cols=188 Identities=14% Similarity=0.113 Sum_probs=115.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccC-CceEEEEeCCCCCHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF-QIKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F-~~~~wv~vs~~~~~~~~l~~i 262 (600)
..++|++..++.|..++... ..+.+.|+|++|+|||++|+.+++..... .+ ...+.++.+..... +.+...
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELFGE-NWRHNFLELNASDERGI-NVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHHGG-GHHHHEEEEETTCHHHH-HTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhcCC-cccCceEEeeccccCch-HHHHHH
Confidence 35899999999999998654 23458999999999999999998743111 11 11233333221000 001111
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHH--hhcCcc
Q 039283 263 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVA--ETMRAV 340 (600)
Q Consensus 263 l~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~--~~~~~~ 340 (600)
+..+.... ....+++.++|+||++......+..+...+.....++++|+||....-. ......
T Consensus 97 ~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 97 VKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 11100000 0112578899999998776666666665555445677888888764211 111123
Q ss_pred ceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHhhh
Q 039283 341 STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGGLL 398 (600)
Q Consensus 341 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~~L 398 (600)
..+.+.+++.++...++...+..... ..+ .+....|++.++|.|..+..+...+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGL-ELT---EEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-EEC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 57899999999999999877643221 112 3567889999999998665554443
No 18
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.92 E-value=1.4e-08 Score=104.95 Aligned_cols=195 Identities=17% Similarity=0.168 Sum_probs=115.0
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.++|++..++.|..++.... ....+.|+|++|+|||++|+.+.+.......+. ..+.........+..
T Consensus 17 ~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~~~~ 84 (373)
T 1jr3_A 17 DVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCREIEQ 84 (373)
T ss_dssp TSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHHHHT
T ss_pred hccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHHHhc
Confidence 48999999999999996542 235789999999999999999876432111110 000000000111110
Q ss_pred H-------hhcCCCCCcccHHHHHHHHHHH-hCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH-H-H
Q 039283 265 S-------IASDQCTDKDDLNLLQEKLKKQ-LSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG-V-A 334 (600)
Q Consensus 265 ~-------l~~~~~~~~~~~~~l~~~l~~~-L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v-~ 334 (600)
. +.............+...+... ..+++.+||+||++..+...+..+...+.....+..+|++|.... + .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 164 (373)
T 1jr3_A 85 GRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (373)
T ss_dssp SCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCH
T ss_pred cCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcH
Confidence 0 0000000112233322222111 135678999999987776667666665554445677777776442 1 1
Q ss_pred hhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 335 ETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 335 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
........+.+.+++.++..+++.+.+...+. ..+ .+....|++.++|.|..+..+.
T Consensus 165 ~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~-~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 165 TILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHhheeEeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 11223468999999999999999876532111 112 2557789999999998876654
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.92 E-value=1.1e-08 Score=101.95 Aligned_cols=175 Identities=11% Similarity=0.013 Sum_probs=106.8
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhcc---CC--ceEEEEeCCCCCHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH---FQ--IKAWTCVSEDFDVFTVS 259 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~---F~--~~~wv~vs~~~~~~~~l 259 (600)
.+.||++|.++|...|...- ..+....+.|+|++|+|||++++.+++....... .+ ..+.+++....+...++
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i--~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~ 98 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSL--MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALY 98 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHH
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHH
Confidence 38899999999998886532 2346678999999999999999999985432211 11 34577777778889999
Q ss_pred HHHHHHhhcCCCCCcccHHHHHHHHHHH--hCCCcEEEEEecCCCCC-hhhHHhhcCCC-CCCCCCcEEEEeccCh--H-
Q 039283 260 KSILNSIASDQCTDKDDLNLLQEKLKKQ--LSGKKFLLVLDDVWNEN-YNSWRALSCPF-GAGASGSKIVVTHRNQ--G- 332 (600)
Q Consensus 260 ~~il~~l~~~~~~~~~~~~~l~~~l~~~--L~~k~~LlVlDdv~~~~-~~~~~~l~~~l-~~~~~gs~IlvTtR~~--~- 332 (600)
..|++++.+.........+.+...+... -.+++++++||+++... ....-.+.... ...++.+-|.++.... .
T Consensus 99 ~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~ 178 (318)
T 3te6_A 99 EKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIRE 178 (318)
T ss_dssp HHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHH
T ss_pred HHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchh
Confidence 9999999765321223344444444432 24678999999996543 11111111100 1112222233333321 1
Q ss_pred -HH----hhcCccceeecCCCCHHHHHHHHHHhhc
Q 039283 333 -VA----ETMRAVSTKTLKELSDDDCLRVLIQHSL 362 (600)
Q Consensus 333 -v~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 362 (600)
+. ..+ ....+.+.+.+.++-.+++.+++.
T Consensus 179 ~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 179 QINIMPSLKA-HFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp HHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcchhhhccC-CceEEEeCCCCHHHHHHHHHHHHH
Confidence 11 111 125689999999999999988763
No 20
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.91 E-value=2e-08 Score=101.27 Aligned_cols=183 Identities=13% Similarity=0.104 Sum_probs=115.3
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCC-ceEEEEeCCCCCHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ-IKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l~~i 262 (600)
..++|++..++.|.+++... ..+.+.|+|++|+|||++|+.+.+... ...+. ..+.++.+......
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~------ 83 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGID------ 83 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTCTT------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccChH------
Confidence 35899999999999888543 333489999999999999999887421 11111 12334433321110
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHH--h-CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH-H-Hhhc
Q 039283 263 LNSIASDQCTDKDDLNLLQEKLKKQ--L-SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG-V-AETM 337 (600)
Q Consensus 263 l~~l~~~~~~~~~~~~~l~~~l~~~--L-~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v-~~~~ 337 (600)
........+... + .+++.++|+|+++.........+...+.....++.+|+||.... + ....
T Consensus 84 -------------~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 84 -------------VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp -------------TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred -------------HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 001111111111 1 25688999999987766667777777766556778888876543 1 1111
Q ss_pred CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHh
Q 039283 338 RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 396 (600)
Q Consensus 338 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~ 396 (600)
.....+.+.+++.++...++.+.+..... ..+ .+....|+..++|.|..+.....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~~l~ 205 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEGV-KIT---EDGLEALIYISGGDFRKAINALQ 205 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTCC-CBC---HHHHHHHHHTTTTCHHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHH
Confidence 23458999999999999999877643221 222 25677888999999986554433
No 21
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.71 E-value=1.7e-07 Score=95.89 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=114.0
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCC-ceEEEEeCCCCCHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ-IKAWTCVSEDFDVFTVSKSI 262 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l~~i 262 (600)
..++|++..++.|..++... ..+.+.|+|++|+||||+|+.+.+.......+. ..+.++.+...... .+...
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSA------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCT------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTTH
T ss_pred HHhhCCHHHHHHHHHHHhcC------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHHH
Confidence 45899999999999998543 223389999999999999999987532211122 22334433322222 22222
Q ss_pred HHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH-HH-hhcCcc
Q 039283 263 LNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG-VA-ETMRAV 340 (600)
Q Consensus 263 l~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v~-~~~~~~ 340 (600)
+..+........... .....-.+++-+|++|++..........+...+.......++|++|.... +. ......
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 222221110000000 00111124567999999977665555555555444444567777765432 11 111123
Q ss_pred ceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 341 STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 341 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
..+.+.+++.++....+.+.+..... ..+ .+....|++.++|.|..+..+.
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~~~-~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQENV-KCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTC-CCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHhCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 57889999999999999887643221 222 3567889999999998654443
No 22
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.66 E-value=6.3e-08 Score=89.42 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=38.6
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhh
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
..++||+.+++++.+++... ..+.+.|+|++|+|||+||+.+++..
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45899999999999998542 34578999999999999999998743
No 23
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.60 E-value=1.1e-06 Score=89.38 Aligned_cols=179 Identities=16% Similarity=0.153 Sum_probs=105.4
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|++..++.+..++..... .......+.|+|++|+|||+||+.+.+. .... .+.++.+...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~---~~~~~~~~~~---------- 92 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSAN---IKTTAAPMIE---------- 92 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCC---EEEEEGGGCC----------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEecchhcc----------
Confidence 4699999999999998864310 1134456899999999999999999763 2222 2233322111
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC------------------CCCcEEE
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG------------------ASGSKIV 325 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~------------------~~gs~Il 325 (600)
........+.. ..+..+|+||++..........+...+... .++..+|
T Consensus 93 ------------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 93 ------------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp ------------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred ------------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 11111122221 245678999999766544444443222111 1235566
Q ss_pred EeccChHH-Hh-hcCcc-ceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHh
Q 039283 326 VTHRNQGV-AE-TMRAV-STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 396 (600)
Q Consensus 326 vTtR~~~v-~~-~~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~ 396 (600)
.+|..... .. ..... ..+.+.+++.++...++.+.+..... . -..+....|++.+.|+|-.+..+..
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~-~---~~~~~~~~l~~~~~G~~r~l~~~l~ 228 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK-T---CEEKAALEIAKRSRSTPRIALRLLK 228 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-E---ECHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHHCcCHHHHHHHHH
Confidence 66654321 11 11122 57999999999999999877643211 1 1235677888899999965554443
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.57 E-value=7.9e-08 Score=92.43 Aligned_cols=175 Identities=14% Similarity=0.089 Sum_probs=99.2
Q ss_pred Ccccccc---chHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGRE---KDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~---~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
..|+|++ ..++.+..++... ..+.+.|+|++|+|||+||+.+++... .......|++++.....
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHH-----
Confidence 3577643 4455566655432 346899999999999999999987432 22334566665432110
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhh--HHhhcCCCCCC-CCC-cEEEEeccChH----
Q 039283 261 SILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNS--WRALSCPFGAG-ASG-SKIVVTHRNQG---- 332 (600)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~IlvTtR~~~---- 332 (600)
+. ..+ ..+ .++.+|||||++...... ...+...+... ..+ ..+|+||+...
T Consensus 95 -----~~--------------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 95 -----ST--------------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp -----CG--------------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred -----HH--------------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 00 000 011 346799999996543222 22232222111 112 24777776432
Q ss_pred -----HHhhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHh
Q 039283 333 -----VAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 396 (600)
Q Consensus 333 -----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~ 396 (600)
+...+.....+.+.+++.++..+++.+.+..... ..+ .+....|++.++|++-.+..+..
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL-QLP---EDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC-CCC---HHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHccCCHHHHHHHHH
Confidence 1111111267899999999999999887642211 222 35677888999999877665543
No 25
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.54 E-value=4.8e-07 Score=95.19 Aligned_cols=181 Identities=17% Similarity=0.144 Sum_probs=103.2
Q ss_pred CccccccchH---HHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGREKDK---EAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~~e~---~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
..++|.+..+ ..|...+... ....+.|+|++|+||||||+.+.+.. ... ++.++........++
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~~--~~~-----f~~l~a~~~~~~~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARYA--NAD-----VERISAVTSGVKEIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHHT--TCE-----EEEEETTTCCHHHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHHh--CCC-----eEEEEeccCCHHHHH
Confidence 3588988877 6777777543 34789999999999999999998732 222 222221111111111
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEE-EeccChHH---Hhh
Q 039283 261 SILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIV-VTHRNQGV---AET 336 (600)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il-vTtR~~~v---~~~ 336 (600)
.++... ......+++.+|+||+++.......+.+...+..+ ...+| .||.+... ...
T Consensus 93 ~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL 153 (447)
T 3pvs_A 93 EAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSAL 153 (447)
T ss_dssp HHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHH
T ss_pred HHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHH
Confidence 111111 11112467899999999876554554554444432 23344 35555421 122
Q ss_pred cCccceeecCCCCHHHHHHHHHHhhcCCCCC---CCChhHHHHHHHHHHhhcCchhHHHHHHh
Q 039283 337 MRAVSTKTLKELSDDDCLRVLIQHSLGARDF---NIPQSLKEVAEKIVKKCKGLPLAAKTLGG 396 (600)
Q Consensus 337 ~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~---~~~~~l~~~~~~I~~~~~GlPLai~~~~~ 396 (600)
......+.+.+++.++...++.+........ ....-..+....|++.++|.+-.+..+..
T Consensus 154 ~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le 216 (447)
T 3pvs_A 154 LSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLE 216 (447)
T ss_dssp HTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred hCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 2344688899999999999998876431110 01112235677888889999876654443
No 26
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.53 E-value=1.1e-06 Score=90.52 Aligned_cols=201 Identities=14% Similarity=0.128 Sum_probs=108.8
Q ss_pred CccccccchHHH---HHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEe----CCCCCHH
Q 039283 184 DEVYGREKDKEA---IVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCV----SEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~---l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~v----s~~~~~~ 256 (600)
..++|++..++. +.+.+.... ...+.+.|+|++|+|||+||+.+.+... ...+ .+.++. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~--~~~~-~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG--PDTP-FTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC--SSCC-EEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc--ccCC-cccccchhhhhcccchh
Confidence 469999988766 445444332 2346899999999999999999987432 1111 122221 1222333
Q ss_pred HHHHHHHHHhhcCC-----------------------------CCCcccHHHHHHHHHHHh-----CCC----cEEEEEe
Q 039283 257 TVSKSILNSIASDQ-----------------------------CTDKDDLNLLQEKLKKQL-----SGK----KFLLVLD 298 (600)
Q Consensus 257 ~~l~~il~~l~~~~-----------------------------~~~~~~~~~l~~~l~~~L-----~~k----~~LlVlD 298 (600)
+.+...+....+.. .........+...+.... .++ +.+|+||
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 44444433311100 000000112222222111 233 4699999
Q ss_pred cCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh------------HH-HhhcCccceeecCCCCHHHHHHHHHHhhcCCC
Q 039283 299 DVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ------------GV-AETMRAVSTKTLKELSDDDCLRVLIQHSLGAR 365 (600)
Q Consensus 299 dv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~------------~v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 365 (600)
+++..+......+...+........++.|++.. .+ .........+.+.+++.++..+++...+....
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~~~ 276 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEED 276 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHHHHHHHHTT
T ss_pred hccccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHHHHHHHHcC
Confidence 998776666666666555443333333333210 00 11122335689999999999999987764322
Q ss_pred CCCCChhHHHHHHHHHHhhc-CchhHHHHHH
Q 039283 366 DFNIPQSLKEVAEKIVKKCK-GLPLAAKTLG 395 (600)
Q Consensus 366 ~~~~~~~l~~~~~~I~~~~~-GlPLai~~~~ 395 (600)
. ..+ .+....|++.+. |.|-.+..+.
T Consensus 277 ~-~~~---~~~l~~l~~~~~~G~~r~~~~ll 303 (368)
T 3uk6_A 277 V-EMS---EDAYTVLTRIGLETSLRYAIQLI 303 (368)
T ss_dssp C-CBC---HHHHHHHHHHHHHSCHHHHHHHH
T ss_pred C-CCC---HHHHHHHHHHhcCCCHHHHHHHH
Confidence 1 222 356778888887 8886655443
No 27
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.50 E-value=6.8e-07 Score=88.48 Aligned_cols=186 Identities=16% Similarity=0.144 Sum_probs=101.6
Q ss_pred CCccccccchHHHHHHHHhcCCCC-------CCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDLR-------ADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDV 255 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 255 (600)
-..++|.+..+++|.+.+...-.. +-.....+.|+|++|+|||+||+.+++.. ... .+.++.+.-.
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~~---~~~v~~~~~~-- 88 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NAT---FIRVVGSELV-- 88 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TCE---EEEEEGGGGC--
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCC---EEEEehHHHH--
Confidence 346899999999998887432000 01234579999999999999999998632 111 1223322110
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCC-----------Chh---hHHhhcCCCC--CCC
Q 039283 256 FTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE-----------NYN---SWRALSCPFG--AGA 319 (600)
Q Consensus 256 ~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~-----------~~~---~~~~l~~~l~--~~~ 319 (600)
... ...........+......++.+|+||+++.. +.. .+..+...+. ...
T Consensus 89 ------------~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 89 ------------KKF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp ------------CCS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred ------------Hhc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 000 1111222233333344467789999999431 111 1111221111 122
Q ss_pred CCcEEEEeccChHHHh--hc---CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcC-chhHHHH
Q 039283 320 SGSKIVVTHRNQGVAE--TM---RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKG-LPLAAKT 393 (600)
Q Consensus 320 ~gs~IlvTtR~~~v~~--~~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~G-lPLai~~ 393 (600)
.+..||.||....... .. .-...+.+...+.++..+++......... ..... ...|+..+.| .|-.|..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 4567788887542211 01 11247889999999999999887643221 11112 3556667776 4544444
Q ss_pred H
Q 039283 394 L 394 (600)
Q Consensus 394 ~ 394 (600)
+
T Consensus 230 l 230 (285)
T 3h4m_A 230 I 230 (285)
T ss_dssp H
T ss_pred H
Confidence 3
No 28
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.48 E-value=9.9e-07 Score=92.88 Aligned_cols=162 Identities=15% Similarity=0.157 Sum_probs=96.0
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCC--ceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ--IKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~--~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
...+.|+|++|+||||||+.+++.. ...++ ..++++. ..+...+...+... .. ..+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l--~~~~~~~~v~~v~~------~~~~~~~~~~~~~~------~~----~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV--VQNEPDLRVMYITS------EKFLNDLVDSMKEG------KL----NEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH--HHHCCSSCEEEEEH------HHHHHHHHHHHHTT------CH----HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HHhCCCCeEEEeeH------HHHHHHHHHHHHcc------cH----HHHHHHh
Confidence 5689999999999999999998743 23332 2345443 33444455544322 11 1233334
Q ss_pred CCCcEEEEEecCCCCCh--hhHHhhcCCCCC-CCCCcEEEEeccChH---------HHhhcCccceeecCCCCHHHHHHH
Q 039283 289 SGKKFLLVLDDVWNENY--NSWRALSCPFGA-GASGSKIVVTHRNQG---------VAETMRAVSTKTLKELSDDDCLRV 356 (600)
Q Consensus 289 ~~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~IlvTtR~~~---------v~~~~~~~~~~~l~~L~~~ea~~L 356 (600)
..++.+|+|||++.... ...+.+...+.. ...|..||+||.+.. +...+.....+.+.+++.++..++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 44677999999965432 222333332211 124677888887631 122222235788999999999999
Q ss_pred HHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 357 LIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 357 f~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
+.+.+..... ..++ +....|++.+.|++--+.-+
T Consensus 272 L~~~~~~~~~-~i~~---e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 272 ARKMLEIEHG-ELPE---EVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp HHHHHHHHTC-CCCT---THHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHcCC-CCCH---HHHHHHHHhcCCCHHHHHHH
Confidence 9887642111 1222 44667888999998655443
No 29
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.47 E-value=2.4e-06 Score=86.60 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=105.2
Q ss_pred cchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhcc-------------------CCceEEEEeC
Q 039283 190 EKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH-------------------FQIKAWTCVS 250 (600)
Q Consensus 190 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~-------------------F~~~~wv~vs 250 (600)
+...+.|...+..+ .-...+.++|++|+|||++|+.+.+....... .....++...
T Consensus 8 ~~~~~~l~~~i~~~-----~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~ 82 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-----RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPE 82 (334)
T ss_dssp HHHHHHHHHHHHTT-----CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCC
T ss_pred HHHHHHHHHHHHcC-----CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecc
Confidence 34566677777543 23457999999999999999988764311110 0112222211
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh-----CCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEE
Q 039283 251 EDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL-----SGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIV 325 (600)
Q Consensus 251 ~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L-----~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~Il 325 (600)
. .......++..+ +.+.+ .+++-++|+|+++..+....+.+...+.....++.+|
T Consensus 83 ~-------------------~~~~~~i~~ir~-l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 83 K-------------------GKNTLGVDAVRE-VTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp T-------------------TCSSBCHHHHHH-HHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred c-------------------cCCCCCHHHHHH-HHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 0 001122222222 22222 2567899999998877666677766666555667777
Q ss_pred EeccChH-H-HhhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 326 VTHRNQG-V-AETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 326 vTtR~~~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
++|.+.. + .........+.+.+++.++..+.+.+.. ..+ .+.+..+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------TMS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------CCC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------CCC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 7776642 1 2222344689999999999999998764 111 2456778999999997665443
No 30
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.46 E-value=9.9e-07 Score=90.22 Aligned_cols=198 Identities=11% Similarity=0.083 Sum_probs=107.4
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc----cCCc----------------
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR----HFQI---------------- 243 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~----~F~~---------------- 243 (600)
..++|.+..++.|.+++... +....+.|+|++|+||||||+.+........ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~-----~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP-----RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT-----TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred HHhcCCHHHHHHHHHHHhhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 35899999888888877222 1222389999999999999998876311000 0000
Q ss_pred ----eEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC
Q 039283 244 ----KAWTCVSEDF-DVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG 318 (600)
Q Consensus 244 ----~~wv~vs~~~-~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~ 318 (600)
.+.+..+... ......++++..+..... ..... .+.. +.+++-++|||++...+......+...+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-----VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhcc-----ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 0111111000 000012222222221110 00000 0000 2346779999999887766666665555433
Q ss_pred CCCcEEEEeccChH-H-HhhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHHh
Q 039283 319 ASGSKIVVTHRNQG-V-AETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLGG 396 (600)
Q Consensus 319 ~~gs~IlvTtR~~~-v-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~~ 396 (600)
..++.+|++|.... + .........+.+.+++.++..+.+.+.+...+. ..+. .+.+..|++.++|.+..+..+..
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~--~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-QLET--KDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-EECC--SHHHHHHHHHHTTCHHHHHHHHT
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHHcCCCHHHHHHHHH
Confidence 45677777776532 1 112223468999999999999999876532211 1110 15677889999999976655443
No 31
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.46 E-value=1.5e-06 Score=87.84 Aligned_cols=181 Identities=19% Similarity=0.141 Sum_probs=104.9
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
.+++|.+..++.|.+++.... ...++.+.|++|+|||++|+.+.+.. . ...+.++.+.. . .+.+...+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~l--~---~~~~~i~~~~~-~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHDV--N---ADMMFVNGSDC-K-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHHT--T---EEEEEEETTTC-C-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--C---CCEEEEccccc-C-HHHHHHHH
Confidence 468999999999999997432 34678889999999999999998642 1 12334444332 1 22222222
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC-hhhHHhhcCCCCCCCCCcEEEEeccChHH-H-hhcCcc
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-YNSWRALSCPFGAGASGSKIVVTHRNQGV-A-ETMRAV 340 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~IlvTtR~~~v-~-~~~~~~ 340 (600)
........ ..+++.+|++|+++... ......+...+.....++.+|+||....- . ......
T Consensus 94 ~~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~ 157 (324)
T 3u61_B 94 TNFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRC 157 (324)
T ss_dssp HHHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHS
T ss_pred HHHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhC
Confidence 22111100 12477899999997765 44555555444333346778888776431 1 111123
Q ss_pred ceeecCCCCHHHHHHHH-------HHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 341 STKTLKELSDDDCLRVL-------IQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 341 ~~~~l~~L~~~ea~~Lf-------~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
..+.+.+++.++-.+++ .+.+..... ..++ .+....|++.++|.+..+....
T Consensus 158 ~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~-~~~~--~~~~~~l~~~~~gd~R~a~~~L 216 (324)
T 3u61_B 158 RVITFGQPTDEDKIEMMKQMIRRLTEICKHEGI-AIAD--MKVVAALVKKNFPDFRKTIGEL 216 (324)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTC-CBSC--HHHHHHHHHHTCSCTTHHHHHH
T ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCC-CCCc--HHHHHHHHHhCCCCHHHHHHHH
Confidence 57899999988743332 222211111 1111 2556778888988876544333
No 32
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.44 E-value=4e-06 Score=81.62 Aligned_cols=188 Identities=13% Similarity=0.091 Sum_probs=100.2
Q ss_pred CccccccchHHHHHHHHh---cCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLL---RDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..++|.+..++.|.+++. .... .+....+.+.|+|++|+|||+||+.+++.. .. ..+.++.+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~--~~---~~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA--QV---PFLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH--TC---CEEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEechHHHHhh--
Confidence 458999988877766542 2110 011334568899999999999999998732 21 1234444322110
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC------------h---hhHHhhcCCCCC--CCC
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN------------Y---NSWRALSCPFGA--GAS 320 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~------------~---~~~~~l~~~l~~--~~~ 320 (600)
. .......+...+.......+.+|+||+++... . .....+...+.. ...
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 11112223333444444568999999996531 0 111222221111 123
Q ss_pred CcEEEEeccChHHHh--hcC--c-cceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHH
Q 039283 321 GSKIVVTHRNQGVAE--TMR--A-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTL 394 (600)
Q Consensus 321 gs~IlvTtR~~~v~~--~~~--~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~ 394 (600)
+..||.||....... ... . ...+.+...+.++-.+++...+..... ..........+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~---~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKL---TQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTC---CBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCC---CcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 556777776543211 111 1 256778999999999999877643221 11222234778888888754 45444
Q ss_pred H
Q 039283 395 G 395 (600)
Q Consensus 395 ~ 395 (600)
.
T Consensus 222 ~ 222 (262)
T 2qz4_A 222 C 222 (262)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.43 E-value=1.3e-06 Score=87.44 Aligned_cols=161 Identities=15% Similarity=0.099 Sum_probs=91.5
Q ss_pred ccccccchHHHHHHHHhcC---------CCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCH
Q 039283 185 EVYGREKDKEAIVELLLRD---------DLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDV 255 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~---------~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 255 (600)
.++|.+..++.|.+++... +.........+.|+|++|+|||+||+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 3788888888887665321 0001234567999999999999999988875433222222223333311
Q ss_pred HHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCC---------ChhhHHhhcCCCCCCCCCcEEEE
Q 039283 256 FTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE---------NYNSWRALSCPFGAGASGSKIVV 326 (600)
Q Consensus 256 ~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~Ilv 326 (600)
.+.... ...........+... ++.+|+||+++.. .......+...+.....+..||+
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 011100 111122222333332 3469999999633 44444555555544455677888
Q ss_pred eccChHHHh-------hcCcc-ceeecCCCCHHHHHHHHHHhhc
Q 039283 327 THRNQGVAE-------TMRAV-STKTLKELSDDDCLRVLIQHSL 362 (600)
Q Consensus 327 TtR~~~v~~-------~~~~~-~~~~l~~L~~~ea~~Lf~~~a~ 362 (600)
||....... ..... ..+.+.+++.++..+++...+.
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 876432211 11112 6789999999999999987764
No 34
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.40 E-value=2.2e-06 Score=92.25 Aligned_cols=197 Identities=14% Similarity=0.177 Sum_probs=106.3
Q ss_pred CccccccchHHHHHHHHhcCC-----------CCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC
Q 039283 184 DEVYGREKDKEAIVELLLRDD-----------LRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED 252 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~-----------~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 252 (600)
..++|++..+++|.+++.... ..+.+..+.+.|+|++|+|||+||+.+++.. .+ ..+.++.+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 458999999999999996510 0011235789999999999999999998743 11 2234444443
Q ss_pred CCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh---hhHHhhcCCCCCCCCCcEEEEecc
Q 039283 253 FDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY---NSWRALSCPFGAGASGSKIVVTHR 329 (600)
Q Consensus 253 ~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~---~~~~~l~~~l~~~~~gs~IlvTtR 329 (600)
... .++...+.......... .-...... .....+++.+|+||+++.... ..+..+...+.. .+..||+++.
T Consensus 114 ~~~-~~~~~~i~~~~~~~~~~-~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~ 187 (516)
T 1sxj_A 114 RSK-TLLNAGVKNALDNMSVV-GYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN 187 (516)
T ss_dssp CCH-HHHHHTGGGGTTBCCST-TTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES
T ss_pred chH-HHHHHHHHHHhccccHH-HHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc
Confidence 332 22222222221111000 00000000 001235788999999965432 122333322222 1233554444
Q ss_pred ChH---HHhhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch-hHHHHHH
Q 039283 330 NQG---VAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP-LAAKTLG 395 (600)
Q Consensus 330 ~~~---v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP-Lai~~~~ 395 (600)
... +.........+.+.+++.++..+++...+..... ..++ +....|++.++|.+ -++..+.
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 321 2222223457899999999999988776543221 1222 44677888999955 4555543
No 35
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.38 E-value=7.2e-06 Score=80.47 Aligned_cols=170 Identities=15% Similarity=0.186 Sum_probs=92.5
Q ss_pred ccccccchHHHHHH-------HHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 185 EVYGREKDKEAIVE-------LLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 185 ~~vGR~~e~~~l~~-------~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
.++|.+...+++.. .+... .......+.|+|++|+|||+||+.+++. .. .+ .+.++.+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~--~~--~~-~~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEE--SN--FP-FIKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHH--HT--CS-EEEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHH--hC--CC-EEEEeCHHH-----
Confidence 47788777666665 33221 1245678999999999999999999874 21 22 122222211
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCC----------ChhhHHhhcCCCC---CCCCCcEE
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE----------NYNSWRALSCPFG---AGASGSKI 324 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~----------~~~~~~~l~~~l~---~~~~gs~I 324 (600)
+.+. . .......+...+......++.+|+||+++.. .......+...+. .......|
T Consensus 101 --------~~g~-~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 --------MIGF-S-ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp --------CTTC-C-HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred --------hcCC-c-hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 1000 0 0111122333344444567899999998432 1111222322222 22334557
Q ss_pred EEeccChHHHhh---cCc-cceeecCCCCH-HHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcC
Q 039283 325 VVTHRNQGVAET---MRA-VSTKTLKELSD-DDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKG 386 (600)
Q Consensus 325 lvTtR~~~v~~~---~~~-~~~~~l~~L~~-~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~G 386 (600)
|.||........ ... ...+.+++++. ++...++.+.. ..+ .+....|++.+.|
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NFK---DKERTTIAQQVKG 228 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CSC---HHHHHHHHHHHTT
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CCC---HHHHHHHHHHhcC
Confidence 777777644332 122 35688999988 66666665531 111 2456778888877
No 36
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.30 E-value=4.9e-06 Score=84.60 Aligned_cols=182 Identities=13% Similarity=0.149 Sum_probs=104.2
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCC-ceEEEEeCCCCCHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQ-IKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~-~~~wv~vs~~~~~~~~l~~il 263 (600)
.++|.+..++.|..++..+ ..+.+.++|++|+||||+|+.+...... ..+. ...-++.+....... .+.++
T Consensus 26 ~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~~-~~~~~~~~~~~~~~~~~~~~-ir~~i 97 (340)
T 1sxj_C 26 EVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIYG-KNYSNMVLELNASDDRGIDV-VRNQI 97 (340)
T ss_dssp GCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHHT-TSHHHHEEEECTTSCCSHHH-HHTHH
T ss_pred HhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHcC-CCccceEEEEcCcccccHHH-HHHHH
Confidence 4789988888888888543 3334899999999999999998874211 1111 112222222111111 11111
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH-H-HhhcCccc
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG-V-AETMRAVS 341 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~-v-~~~~~~~~ 341 (600)
..+.... ..+.+.+-++|+|+++.......+.+...+......+.+|++|.... + ........
T Consensus 98 ~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~ 162 (340)
T 1sxj_C 98 KDFASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCT 162 (340)
T ss_dssp HHHHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred HHHHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhce
Confidence 1111000 00123467899999976665555555544433334567777765432 1 11112335
Q ss_pred eeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHH
Q 039283 342 TKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKT 393 (600)
Q Consensus 342 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~ 393 (600)
.+.+.+++.++..+.+.+.+..... ..+ .+..+.|++.++|.+--+..
T Consensus 163 ~~~~~~l~~~~~~~~l~~~~~~~~~-~i~---~~~~~~i~~~s~G~~r~~~~ 210 (340)
T 1sxj_C 163 RFRFQPLPQEAIERRIANVLVHEKL-KLS---PNAEKALIELSNGDMRRVLN 210 (340)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTTC-CBC---HHHHHHHHHHHTTCHHHHHH
T ss_pred eEeccCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHH
Confidence 7889999999999888776532211 122 25577888999998875433
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.27 E-value=2.8e-05 Score=78.31 Aligned_cols=188 Identities=15% Similarity=0.078 Sum_probs=103.8
Q ss_pred CccccccchHHHHHHHHhcCC------CCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDD------LRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~------~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..++|.+..++.|.+++.... .......+.+.|+|++|+|||+||+.+++. ....| +.++.+ +
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------H
Confidence 468999999999988872100 001223467999999999999999999873 22222 222221 1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh-----------hhHHhhcCCC---CCCCCCcE
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY-----------NSWRALSCPF---GAGASGSK 323 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l---~~~~~gs~ 323 (600)
+.... .......+...+...-..++.+|+||+++.... .....+...+ .....+..
T Consensus 87 ----l~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 ----LVSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp ----HHTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred ----Hhhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 11111 111122222233333345788999999963211 0122222222 12234566
Q ss_pred EEEeccChHHHh-h-c-CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcC-chhHHHHHHh
Q 039283 324 IVVTHRNQGVAE-T-M-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKG-LPLAAKTLGG 396 (600)
Q Consensus 324 IlvTtR~~~v~~-~-~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~G-lPLai~~~~~ 396 (600)
||.||....... . . .-...+.+...+.++-.+++...+..... ... ......|++.+.| .+-.|..+..
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~l~~la~~t~g~sg~di~~l~~ 229 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-VLT---KEDYRTLGAMTEGYSGSDIAVVVK 229 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-CCC---HHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 666776542211 0 0 11246778889999999999887643221 112 2456778888887 4555555543
No 38
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.26 E-value=1.4e-05 Score=80.52 Aligned_cols=157 Identities=13% Similarity=0.125 Sum_probs=87.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
....+.|+|++|+||||||+.+++..... -...++++. .++...+...+... ..... ...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~------~~~~~~~~~~~~~~------~~~~~----~~~~~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSA------DDFAQAMVEHLKKG------TINEF----RNMYK 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEH------HHHHHHHHHHHHHT------CHHHH----HHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEH------HHHHHHHHHHHHcC------cHHHH----HHHhc
Confidence 34678999999999999999998743221 122345543 33344444443321 11111 22222
Q ss_pred CCcEEEEEecCCCCCh--hhHHhhcCCCCC-CCCCcEEEEeccChHH---------HhhcCccceeecCCCCHHHHHHHH
Q 039283 290 GKKFLLVLDDVWNENY--NSWRALSCPFGA-GASGSKIVVTHRNQGV---------AETMRAVSTKTLKELSDDDCLRVL 357 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~IlvTtR~~~v---------~~~~~~~~~~~l~~L~~~ea~~Lf 357 (600)
++.+|+|||++.... .....+...+.. ...+..||+||.+... ...+.....+.+.+ +.++..+++
T Consensus 98 -~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 98 -SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp -TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred -CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 367999999965432 222233322211 1235578887764311 11112225689999 999999999
Q ss_pred HHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHH
Q 039283 358 IQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAA 391 (600)
Q Consensus 358 ~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai 391 (600)
...+..... ..+ .+....|++.+ |.+-.+
T Consensus 176 ~~~~~~~~~-~l~---~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 176 KEKLKEFNL-ELR---KEVIDYLLENT-KNVREI 204 (324)
T ss_dssp HHHHHHTTC-CCC---HHHHHHHHHHC-SSHHHH
T ss_pred HHHHHhcCC-CCC---HHHHHHHHHhC-CCHHHH
Confidence 887643221 222 25567788888 776543
No 39
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.26 E-value=9.7e-07 Score=80.93 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=38.1
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999542 3456799999999999999999874
No 40
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.19 E-value=5e-05 Score=77.47 Aligned_cols=187 Identities=16% Similarity=0.099 Sum_probs=100.7
Q ss_pred CccccccchHHHHHHHHhcC----CC--CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLLRD----DL--RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~----~~--~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..++|.+..++.|.+.+..+ .. ......+-+.|+|++|+|||+||+.+++.. ...| +.++.+ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEeeHH------H
Confidence 45899999999998877321 00 011233568899999999999999998743 2111 222221 1
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChh-----------hHHhhcCCC---CCCCCCcE
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN-----------SWRALSCPF---GAGASGSK 323 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~-----------~~~~l~~~l---~~~~~gs~ 323 (600)
+ .... ...........+......++.+|+||+++..... ....+...+ .....+..
T Consensus 120 l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 L----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp H----HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred H----hhhh------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 1 1111 1111222222233333467899999999643210 012222221 12234566
Q ss_pred EEEeccChHHHh--hc-CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcC-chhHHHHHH
Q 039283 324 IVVTHRNQGVAE--TM-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKG-LPLAAKTLG 395 (600)
Q Consensus 324 IlvTtR~~~v~~--~~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~G-lPLai~~~~ 395 (600)
||.||....... .. .-...+.+...+.++-.+++......... ... ......|++.+.| .|-.|..+.
T Consensus 190 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS-VLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 666775442111 01 12256788889999999999877643221 111 2446778888988 454555544
No 41
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.18 E-value=0.0001 Score=74.12 Aligned_cols=190 Identities=14% Similarity=0.101 Sum_probs=102.8
Q ss_pred CccccccchHHHHHHHHhcC----CC--CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLLRD----DL--RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~----~~--~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..++|.+..++.|.+.+..+ .. ......+.+.|+|++|+|||+||+.+++... .. ..+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~---~~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NS---TFFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SC---EEEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CC---cEEEEEhHHHHh---
Confidence 45889999888888776321 00 0122346899999999999999999987421 11 112233332110
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC-------hh----hHHhhcCC---CCCCCCCcE
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-------YN----SWRALSCP---FGAGASGSK 323 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~-------~~----~~~~l~~~---l~~~~~gs~ 323 (600)
.. .......+...+...-..++.+|+||+++... .. ....+... +.....+..
T Consensus 85 -----------~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 -----------KW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -----------SS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -----------hh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 00 11122222233333334678999999995421 00 01112111 111234556
Q ss_pred EEEeccChHHHh-h-c-CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCc-hhHHHHHHhh
Q 039283 324 IVVTHRNQGVAE-T-M-RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL-PLAAKTLGGL 397 (600)
Q Consensus 324 IlvTtR~~~v~~-~-~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~Gl-PLai~~~~~~ 397 (600)
||.||....... . . .-...+.+...+.++-.+++......... ... ......|++.+.|. +-.|..+...
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~~~ 225 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN-SLT---EADFRELGRKTDGYSGADISIIVRD 225 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB-CCC---HHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 666665432111 0 0 12256788888999999999877633211 111 24567888899887 5456655543
No 42
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.17 E-value=1.1e-06 Score=77.59 Aligned_cols=115 Identities=14% Similarity=0.003 Sum_probs=68.7
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.++|++..++++.+.+.... ....-|.|+|++|+|||++|+.+++.... ...+ .+ ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a----~~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~-~v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLS----ETDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGE-FV-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHT----TCCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSC-CE-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCC-EE-EECCCCCcc---------
Confidence 47899999999998875432 12235789999999999999999863211 1122 23 555543221
Q ss_pred HhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 265 SIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 265 ~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
... ...+... ...+|+||+++.........+...+.......++|.||..+
T Consensus 66 ----------~~~---~~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 ----------PQL---NDFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTS 116 (145)
T ss_dssp ----------SCH---HHHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSC
T ss_pred ----------hhh---hcHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcC
Confidence 011 1111111 33578999998776665556555554444456777777653
No 43
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.14 E-value=4.3e-05 Score=78.10 Aligned_cols=189 Identities=12% Similarity=0.078 Sum_probs=102.8
Q ss_pred CccccccchHHHHHHHHhcC----CC--CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLLRD----DL--RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~----~~--~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..++|.+..++.|.+++... .. ......+.+.|+|++|+|||+||+.+++.. .. ..+.++.+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~---~~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GA---TFFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TC---EEEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CC---eEEEEehHHhhc---
Confidence 45899999999998887421 00 001245679999999999999999998632 11 123444432111
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hhhHHhhcCCCC----CCCCCc
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------YNSWRALSCPFG----AGASGS 322 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l~----~~~~gs 322 (600)
.. ...........+......++.+|+||+++... ......+...+. ....+.
T Consensus 156 -----------~~--~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------KW--VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------SS--TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------cc--cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 00 01111112222222233578999999994210 011222222221 112345
Q ss_pred EEEEeccChHHH-h-hcCc-cceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcC-chhHHHHHHhh
Q 039283 323 KIVVTHRNQGVA-E-TMRA-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKG-LPLAAKTLGGL 397 (600)
Q Consensus 323 ~IlvTtR~~~v~-~-~~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~G-lPLai~~~~~~ 397 (600)
.||.||...... . .... ...+.+...+.++..+++...+..... ... .+....|++.+.| .|-.|..+...
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~---~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC-CLS---EEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC-Ccc---HHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 566666543211 1 1112 246788889999998888776633211 111 2557778888888 55666666543
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.09 E-value=7.8e-05 Score=78.45 Aligned_cols=189 Identities=13% Similarity=0.120 Sum_probs=103.3
Q ss_pred CccccccchHHHHHHHHhcC----CC--CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLLRD----DL--RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~----~~--~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..++|.+..++.|.+.+..+ .. ......+.+.|+|++|+|||+||+.+++.. ....++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH----
Confidence 45899999999998877311 00 011234689999999999999999998732 112334433221
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh-----------hhHHhhcCCCCC---CCCCcE
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY-----------NSWRALSCPFGA---GASGSK 323 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~gs~ 323 (600)
+. ....+. .......+.. ..-..++.+|+||+++.... .....+...+.. ...+..
T Consensus 204 l~----~~~~g~---~~~~~~~~f~---~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 LV----SKWLGE---SEKLVKNLFQ---LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHHH---HHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred HH----hhhcch---HHHHHHHHHH---HHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 11 111111 1122222222 22235789999999964311 112334443332 234567
Q ss_pred EEEeccChHHHh--hcCcc-ceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCc-hhHHHHHHh
Q 039283 324 IVVTHRNQGVAE--TMRAV-STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL-PLAAKTLGG 396 (600)
Q Consensus 324 IlvTtR~~~v~~--~~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~Gl-PLai~~~~~ 396 (600)
||.||....... ..... ..+.+...+.++...+|......... ..+ ......|++.+.|. +-.|..+..
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~-~l~---~~~l~~la~~t~G~sgadl~~l~~ 346 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN-SLT---EADFQELGRKTDGYSGADISIIVR 346 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE-ECC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 777776542211 11122 46778888888888888877633211 111 24567788889884 545555543
No 45
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.09 E-value=9.5e-06 Score=86.12 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=80.1
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc---cC-Cc-eEEEEeCCCCCHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR---HF-QI-KAWTCVSEDFDVFTV 258 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~---~F-~~-~~wv~vs~~~~~~~~ 258 (600)
+.++||+.+++.+.+.|.... ..-+.|+|++|+|||+||+.++....... .. .. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-------- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-------- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC--------
Confidence 359999999999999996532 34568999999999999999987421100 00 11 1122222
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHH----
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVA---- 334 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~---- 334 (600)
....+. ..... ...+...-..++.+|++|. .......+...+.. ...++|.+|......
T Consensus 246 -----~~~~g~---~e~~~---~~~~~~~~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~~~ 308 (468)
T 3pxg_A 246 -----TKYRGE---FEDRL---KKVMDEIRQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKYIE 308 (468)
T ss_dssp ---------------CTTH---HHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHT
T ss_pred -----ccccch---HHHHH---HHHHHHHHhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHHhh
Confidence 000000 01122 2223333345778999991 11222334444432 235566655544311
Q ss_pred ---hhcCccceeecCCCCHHHHHHHHHHhh
Q 039283 335 ---ETMRAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 335 ---~~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
........+.+.+.+.++...++....
T Consensus 309 ~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 111234579999999999999998764
No 46
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.09 E-value=5.7e-06 Score=75.70 Aligned_cols=122 Identities=16% Similarity=0.135 Sum_probs=65.4
Q ss_pred ccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhc
Q 039283 189 REKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIAS 268 (600)
Q Consensus 189 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~ 268 (600)
....++.+.+++.+-.. .....+.|+|++|+|||||++.++........+. +++++ ..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~-~~~~~------~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR-GYFFD------TKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC-CCEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe-EEEEE------HHHHHHHHHHHhcC
Confidence 34455555555544321 2346899999999999999999987543222222 23333 44555555544433
Q ss_pred CCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHH--hhcCCCCCC-CCCcEEEEeccCh
Q 039283 269 DQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWR--ALSCPFGAG-ASGSKIVVTHRNQ 331 (600)
Q Consensus 269 ~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~IlvTtR~~ 331 (600)
... . .....+. ++-+|||||++......|. .+...+... ..|..+|+||...
T Consensus 89 ~~~---~---~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 89 GKD---T---KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp TCC---S---HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred chH---H---HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 221 1 2222222 4568999999743222332 222222111 2466788888643
No 47
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.07 E-value=1.6e-05 Score=79.21 Aligned_cols=149 Identities=7% Similarity=-0.034 Sum_probs=92.6
Q ss_pred cccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhh-hhccCCceEEEEeCC-CCCHHHHHHHHHHH
Q 039283 188 GREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDR-VQRHFQIKAWTCVSE-DFDVFTVSKSILNS 265 (600)
Q Consensus 188 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~-~~~~F~~~~wv~vs~-~~~~~~~l~~il~~ 265 (600)
|-+.-++.|...+..+ ..+...++|++|+|||++|..+.+... .........+++.+. ...+. ..+++++.
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id-~ir~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID-DIRTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHH-HHHHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHH-HHHHHHHH
Confidence 4455667777777533 257899999999999999999876311 111123344554332 12221 22333333
Q ss_pred hhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh-HHHhhcCccceee
Q 039283 266 IASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ-GVAETMRAVSTKT 344 (600)
Q Consensus 266 l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~-~v~~~~~~~~~~~ 344 (600)
+.... ..+++-++|+|+++..+....+.++..+....+.+.+|++|.+. .+...+..- .++
T Consensus 74 ~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 74 LNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred Hhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 32111 12456789999998887777777777776555677777776544 222222233 899
Q ss_pred cCCCCHHHHHHHHHHhh
Q 039283 345 LKELSDDDCLRVLIQHS 361 (600)
Q Consensus 345 l~~L~~~ea~~Lf~~~a 361 (600)
+.+++.++..+.+.+..
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998765
No 48
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.06 E-value=4.6e-06 Score=95.38 Aligned_cols=155 Identities=13% Similarity=0.147 Sum_probs=80.9
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc---cC-C-ceEEEEeCCCCCHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR---HF-Q-IKAWTCVSEDFDVFTV 258 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~---~F-~-~~~wv~vs~~~~~~~~ 258 (600)
..++||+.+++++.+.|.... ...+.|+|++|+|||+||+.+++...... .. . ..+.++++.-.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~----- 238 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLL----- 238 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC---------
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhh-----
Confidence 458999999999999996532 24578999999999999999987432111 01 1 12333322110
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhC-CCcEEEEEecCCCCChh-----hHH---hhcCCCCCCCCCcEEEEecc
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLS-GKKFLLVLDDVWNENYN-----SWR---ALSCPFGAGASGSKIVVTHR 329 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~-~k~~LlVlDdv~~~~~~-----~~~---~l~~~l~~~~~gs~IlvTtR 329 (600)
. +... .......+...+...-. +++.+|++|+++..... .++ .+...+.. .+..+|.+|.
T Consensus 239 -----~---g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~I~at~ 307 (854)
T 1qvr_A 239 -----A---GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRLIGATT 307 (854)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT--TCCCEEEEEC
T ss_pred -----c---cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEEEEecC
Confidence 0 0000 11112222233333323 47899999999653210 011 12111211 2344555554
Q ss_pred ChHHH------hhcCccceeecCCCCHHHHHHHHHHh
Q 039283 330 NQGVA------ETMRAVSTKTLKELSDDDCLRVLIQH 360 (600)
Q Consensus 330 ~~~v~------~~~~~~~~~~l~~L~~~ea~~Lf~~~ 360 (600)
..... ........+.+.+++.++..+++...
T Consensus 308 ~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 308 LDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp HHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred chHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 43321 11123456899999999999998643
No 49
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.04 E-value=7e-05 Score=74.30 Aligned_cols=185 Identities=11% Similarity=0.056 Sum_probs=99.7
Q ss_pred CccccccchHHHHHHHHhcCCC------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..++|.+..++.|.+++..+.. ......+.+.|+|++|+|||+||+.++... ... .+.++.+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCC---eEEeeHHHHhh---
Confidence 4589999999999888743100 001234688999999999999999998632 111 22344332111
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh-----------hhHHhhc---CCCCCC--CCC
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY-----------NSWRALS---CPFGAG--ASG 321 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~-----------~~~~~l~---~~l~~~--~~g 321 (600)
.. ...........+......++.+|+||++..... .....+. ..++.. +.+
T Consensus 93 -----------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------KY--VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------SS--CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------cc--cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 00 111112222223333345788999999954211 0111111 111211 134
Q ss_pred cEEEEeccChH-----HHhhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHH
Q 039283 322 SKIVVTHRNQG-----VAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLG 395 (600)
Q Consensus 322 s~IlvTtR~~~-----v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~ 395 (600)
..||.||.... +... -...+.+...+.++...++...+..... ... ......|++.+.|.+- .+..+.
T Consensus 160 v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~~~~la~~~~g~~~~~l~~l~ 233 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQGS-PLD---TEALRRLAKITDGYSGSDLTALA 233 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGSC-CSC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 56666776542 1111 1246777778888888888766532211 111 2456778888988875 555544
No 50
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.03 E-value=6.8e-05 Score=74.63 Aligned_cols=181 Identities=14% Similarity=0.100 Sum_probs=97.9
Q ss_pred CccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..++|.+..+++|.+++...-. ..-...+.+.|+|++|+|||+||+.+++.. .. -++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~-----~~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QA-----NFISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC-----EEEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CC-----CEEEEE----hH
Confidence 4589999988888887743100 001234678999999999999999998732 21 122222 22
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh--------------hhHHhhcCCCC--CCCC
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY--------------NSWRALSCPFG--AGAS 320 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~ 320 (600)
++. ....+.. ... ....+.......+.+|+||++..... .....+...+. ....
T Consensus 84 ~l~----~~~~g~~---~~~---~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 84 ELL----TMWFGES---EAN---VREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHH----HHHHTTC---TTH---HHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHH----hhhcCch---HHH---HHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 222 2222211 111 22333333345789999999953110 01122222221 1124
Q ss_pred CcEEEEeccChHHH-h-hcC--c-cceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhH
Q 039283 321 GSKIVVTHRNQGVA-E-TMR--A-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLA 390 (600)
Q Consensus 321 gs~IlvTtR~~~v~-~-~~~--~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLa 390 (600)
+..||.||...... . ... . ...+.+...+.++-.+++......... ..... ...++..+.|.|-+
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-AKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHTCSSCCHH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-Cccch----HHHHHHHcCCCCHH
Confidence 56777777655322 1 111 1 256889999999988988776533211 11112 23455567776643
No 51
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.95 E-value=0.00017 Score=74.48 Aligned_cols=188 Identities=13% Similarity=0.103 Sum_probs=99.6
Q ss_pred CccccccchHHHHHHHHhcCCC------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..++|.+..++.|.+++..... ......+.+.|+|++|+|||+||+.+++.. .. ..+.++.+.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~--~~---~~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES--NA---TFFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT--TC---EEEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh--cC---cEEEeeHHHhhcc--
Confidence 4689999999999988732100 001234689999999999999999997631 11 1223333221110
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC-----------hhhHHhhcCCC---CC-CCCCc
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN-----------YNSWRALSCPF---GA-GASGS 322 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~-----------~~~~~~l~~~l---~~-~~~gs 322 (600)
. .......+...+...-...+.+|+||+++... ......+...+ .. .....
T Consensus 188 --------~------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 --------Y------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred --------c------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 00111122222223333467899999995321 01111121111 11 12345
Q ss_pred EEEEeccChHHH--hhcCcc-ceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchh-HHHHHHh
Q 039283 323 KIVVTHRNQGVA--ETMRAV-STKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPL-AAKTLGG 396 (600)
Q Consensus 323 ~IlvTtR~~~v~--~~~~~~-~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPL-ai~~~~~ 396 (600)
.||.||...... ...... ..+.+...+.++..+++...+..... ... .+....|++.+.|..- +|..+..
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~-~l~---~~~~~~la~~~~g~~~~~l~~L~~ 327 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS-PLT---QKELAQLARMTDGYSGSDLTALAK 327 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC-CSC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 566666543211 111122 46888899999999999877643221 122 2456788888888554 5655543
No 52
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.92 E-value=0.00014 Score=82.16 Aligned_cols=157 Identities=17% Similarity=0.188 Sum_probs=88.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc----cCCceEEE-EeCCCCCHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR----HFQIKAWT-CVSEDFDVFTV 258 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~----~F~~~~wv-~vs~~~~~~~~ 258 (600)
..++||+.+++++.+.|... ....+.|+|++|+|||++|+.+........ .....+|. +.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 45899999999999999543 335678999999999999999887432111 11222321 11110
Q ss_pred HHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCC--------ChhhHHhhcCCCCCCCCCcEEEEeccC
Q 039283 259 SKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE--------NYNSWRALSCPFGAGASGSKIVVTHRN 330 (600)
Q Consensus 259 l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~IlvTtR~ 330 (600)
+.+... ...-...+...+......++.+|++|+++.. .......++..+... .+..+|.+|..
T Consensus 254 -------~~~~~~-~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~~ 324 (758)
T 1r6b_X 254 -------LAGTKY-RGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTY 324 (758)
T ss_dssp --------CCCCC-SSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEECH
T ss_pred -------hccccc-cchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeCc
Confidence 001110 1112222333333333456799999999754 122222333333332 34566666654
Q ss_pred hHHHhh-------cCccceeecCCCCHHHHHHHHHHhh
Q 039283 331 QGVAET-------MRAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 331 ~~v~~~-------~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
...... ......+.+.+.+.++..+++....
T Consensus 325 ~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred hHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 432211 1233568899999999998887543
No 53
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.92 E-value=0.0001 Score=78.17 Aligned_cols=185 Identities=12% Similarity=0.093 Sum_probs=101.3
Q ss_pred CccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..++|.+..+++|.+++...-. .+.....-+.|+|++|+|||+||+.+.+.. ... .+.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~--~~~---fv~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAF---FFLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC--SSE---EEEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh--CCC---EEEEEch------
Confidence 3589999999999888753200 001234568999999999999999997632 111 2233321
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCC--------C---hhhHHhhcCCCC--CCCCCcE
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE--------N---YNSWRALSCPFG--AGASGSK 323 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~--------~---~~~~~~l~~~l~--~~~~gs~ 323 (600)
.+...+ ...........+.....+++.+|+||+++.. . ......+...+. ....+..
T Consensus 273 ----~l~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 ----EIMSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp ----HHHTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred ----Hhhhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 111111 1122233344455555678899999999321 1 011122222222 1223456
Q ss_pred EEEeccChHH-Hhhc----CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCc-hhHHHHH
Q 039283 324 IVVTHRNQGV-AETM----RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL-PLAAKTL 394 (600)
Q Consensus 324 IlvTtR~~~v-~~~~----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~Gl-PLai~~~ 394 (600)
||.||..... ...+ .-...+.+...+.++-.++|...+..... ..... ...+++.+.|. +-.|..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-CTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-cchhh----HHHHHHHccCCcHHHHHHH
Confidence 6667665422 1111 11246889999999999999877633211 11222 34566677764 5445444
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.91 E-value=3.8e-05 Score=76.73 Aligned_cols=137 Identities=15% Similarity=0.169 Sum_probs=73.2
Q ss_pred ccccccchHHHHHHHHhcCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 261 (600)
.++|.+..++.+...+..... ........+.|+|++|+|||++|+.+.... ...-...+.++++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccccc-cHHH
Confidence 478999998888888754310 011234589999999999999999998742 1111223455554332211 1111
Q ss_pred HHHHhhcCCCCCccc-HHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEEEecc
Q 039283 262 ILNSIASDQCTDKDD-LNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIVVTHR 329 (600)
Q Consensus 262 il~~l~~~~~~~~~~-~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTtR 329 (600)
+ ++......... ...+...+. .....+|+||++..........+...+.... .++.+|+||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~---~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVR---RRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHH---HCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHH---hCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 12111100100 012222222 2345799999998776655555544432211 2444777776
Q ss_pred C
Q 039283 330 N 330 (600)
Q Consensus 330 ~ 330 (600)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.86 E-value=0.00058 Score=68.90 Aligned_cols=178 Identities=20% Similarity=0.191 Sum_probs=93.4
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|.+..++.+...+..... .......+.|+|++|+||||||+.++... ...| ...-+...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~----~~~sg~~~---------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASEL--QTNI----HVTSGPVL---------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHHH--TCCE----EEEETTTC----------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE----EEEechHh----------
Confidence 3578988777777766643200 01234679999999999999999998732 1111 11111110
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC--------C----------CCcEEE
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG--------A----------SGSKIV 325 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~--------~----------~gs~Il 325 (600)
.....+...+ ..+ .++.++++|+++.......+.+...+... . +...++
T Consensus 88 -----------~~~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 88 -----------VKQGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp -----------CSHHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred -----------cCHHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 0011111111 112 23457788888654432222221111000 0 112222
Q ss_pred -EeccChHHHhhc-Cc-cceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHHH
Q 039283 326 -VTHRNQGVAETM-RA-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTLG 395 (600)
Q Consensus 326 -vTtR~~~v~~~~-~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~~ 395 (600)
.|++...+...+ .. .....+++.+.++-.+++.+.+..... .. ..+.+..|++.+.|.|-.+..+.
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~-~~---~~~~~~~ia~~~~G~~R~a~~ll 223 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV-EI---EDAAAEMIAKRSRGTPRIAIRLT 223 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC-CB---CHHHHHHHHHTSTTCHHHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHhcCCChHHHHHHH
Confidence 344433221111 11 135789999999999999877532111 11 23568889999999997654443
No 56
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.86 E-value=5.3e-06 Score=72.87 Aligned_cols=110 Identities=13% Similarity=0.184 Sum_probs=61.8
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.++|++..++++.+.+.... ....-|.|+|++|+|||++|+.+.+... -++.+.-. +.. ...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----~~~~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~-~~~---~~~-- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----KRTSPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARV-EYL---IDM-- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----TCSSCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSST-THH---HHC--
T ss_pred CceeCCHHHHHHHHHHHHHh----CCCCcEEEECCCCccHHHHHHHHHHhCC--------CeEEechh-hCC---hHh--
Confidence 57899999999888875421 1223478999999999999998876321 22222111 110 000
Q ss_pred HhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC-CCCcEEEEeccC
Q 039283 265 SIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG-ASGSKIVVTHRN 330 (600)
Q Consensus 265 ~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs~IlvTtR~ 330 (600)
...+.+. .+.-.|+||++..........+...+... ..+.++|.||..
T Consensus 67 ----------------~~~~~~~--a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 67 ----------------PMELLQK--AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ----------------HHHHHHH--TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ----------------hhhHHHh--CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 0111111 12357899999877655555554443322 245678877753
No 57
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.81 E-value=4.2e-05 Score=86.37 Aligned_cols=149 Identities=17% Similarity=0.190 Sum_probs=81.2
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhc---cCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR---HFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~---~F~~~~wv~vs~~~~~~~~l~ 260 (600)
..++||+.+++++.+.|.... ..-+.|+|++|+|||++|+.+.+...... .....-++.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---------
Confidence 459999999999999996532 24578999999999999999987421100 001111111111
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHHh-----
Q 039283 261 SILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVAE----- 335 (600)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~~----- 335 (600)
-....+. .... +...+......++.+|++|.- . .....+...+.. ...++|.||.......
T Consensus 245 --g~~~~G~---~e~~---l~~~~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~~--~~v~~I~at~~~~~~~~~~~d 310 (758)
T 3pxi_A 245 --GTKYRGE---FEDR---LKKVMDEIRQAGNIILFIDAA--I--DASNILKPSLAR--GELQCIGATTLDEYRKYIEKD 310 (758)
T ss_dssp -------------CTT---HHHHHHHHHTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHHHTTC
T ss_pred --cccccch---HHHH---HHHHHHHHHhcCCEEEEEcCc--h--hHHHHHHHHHhc--CCEEEEeCCChHHHHHHhhcc
Confidence 0000000 1112 223333333467889999921 1 222233333332 2456666665443211
Q ss_pred --hcCccceeecCCCCHHHHHHHHHHhh
Q 039283 336 --TMRAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 336 --~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
.......+.+...+.++..+++....
T Consensus 311 ~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 311 AALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp SHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 11134679999999999999998654
No 58
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.80 E-value=0.00012 Score=77.40 Aligned_cols=98 Identities=11% Similarity=0.039 Sum_probs=61.7
Q ss_pred EEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEe---------cc----C-hHHHhhcCccceeecCCCCHHHHHHHHH
Q 039283 293 FLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVT---------HR----N-QGVAETMRAVSTKTLKELSDDDCLRVLI 358 (600)
Q Consensus 293 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvT---------tR----~-~~v~~~~~~~~~~~l~~L~~~ea~~Lf~ 358 (600)
-++++|+++..+....+.+...+.......-|+.| |. . .-..........+.+.+++.++..+++.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL~ 376 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIK 376 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCCEEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCCEEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHHH
Confidence 39999999888877888887777665444333344 32 1 1111122334567999999999999998
Q ss_pred HhhcCCCCCCCChhHHHHHHHHHHhh-cCchhHHHHH
Q 039283 359 QHSLGARDFNIPQSLKEVAEKIVKKC-KGLPLAAKTL 394 (600)
Q Consensus 359 ~~a~~~~~~~~~~~l~~~~~~I~~~~-~GlPLai~~~ 394 (600)
..+..... ..+ .+....|+..+ .|.|.....+
T Consensus 377 ~~~~~~~~-~~~---~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 377 IRAQTEGI-NIS---EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHTC-CBC---HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHhCC-CCC---HHHHHHHHHHccCCCHHHHHHH
Confidence 76531111 112 25567788888 7888755444
No 59
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.76 E-value=6.7e-05 Score=73.14 Aligned_cols=46 Identities=20% Similarity=0.130 Sum_probs=33.8
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++|.+..+.++.+.+.... .....+.|+|++|+|||+||+.+++.
T Consensus 7 ~~ig~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHLA----PLDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ---CCCHHHHHHHHHHHHHT----TSCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred cceeCCHHHHHHHHHHHHHh----CCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 48999999998887775422 12246789999999999999999864
No 60
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00028 Score=72.05 Aligned_cols=179 Identities=17% Similarity=0.139 Sum_probs=97.6
Q ss_pred CccccccchHHHHHHHHhcC----CC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLRD----DL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~----~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..+.|-++.+++|.+.+.-+ +. -+-..++-|.++|++|+|||.||+++++. ....| +.++.+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 45788888888887765321 00 01234567899999999999999999873 22222 3333332111
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh--------h------hHHhhcCCCC--CCCC
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY--------N------SWRALSCPFG--AGAS 320 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~--------~------~~~~l~~~l~--~~~~ 320 (600)
.. .......+.+.+...-...+++|+||+++.... . ....++..+. ....
T Consensus 221 ------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 286 (405)
T 4b4t_J 221 ------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK 286 (405)
T ss_dssp ------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC
T ss_pred ------------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC
Confidence 00 122223333333333356799999999964210 0 1112222221 1234
Q ss_pred CcEEEEeccChHHHh-h-c---CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 321 GSKIVVTHRNQGVAE-T-M---RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 321 gs~IlvTtR~~~v~~-~-~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
+..||.||....... . . .-...+.+...+.++-.++|..+.-.-.. ...-+ ...|++.+.|.-
T Consensus 287 ~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 287 NIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-TRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-CSSCC----HHHHHHHCCSCC
T ss_pred CeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-CccCC----HHHHHHHCCCCC
Confidence 556677776542211 1 1 12367888888988888988766533211 11122 355667777753
No 61
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.74 E-value=6.2e-05 Score=74.99 Aligned_cols=47 Identities=17% Similarity=0.218 Sum_probs=37.0
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+.++|++..+.++.+.+.... .....|.|+|++|+|||++|+.+.+.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a----~~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVA----PSDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHC----STTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHh----CCCCcEEEECCCCchHHHHHHHHHHh
Confidence 358999999999988886532 12346789999999999999999863
No 62
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.72 E-value=0.00014 Score=72.52 Aligned_cols=51 Identities=27% Similarity=0.346 Sum_probs=37.2
Q ss_pred CccccccchHHHHHHHHhcC----CC----CCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 184 DEVYGREKDKEAIVELLLRD----DL----RADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~----~~----~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++|.+..++.|...+... .. ........+.|+|++|+|||+||+.+.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999998887541 00 00012456889999999999999999874
No 63
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.0004 Score=72.09 Aligned_cols=179 Identities=16% Similarity=0.170 Sum_probs=97.5
Q ss_pred CccccccchHHHHHHHHhcC----CC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLRD----DL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~----~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..+.|-+..+++|.+.+.-+ +. .+-..++-|.++|++|+|||.||+++++.. ...| +.++.+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~--~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI--GANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH--TCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEehhhhcc--
Confidence 45788888888887766321 00 012456789999999999999999998742 2222 3344332211
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCC----------hh----hHHhhcCCCC--CCCC
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNEN----------YN----SWRALSCPFG--AGAS 320 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~----------~~----~~~~l~~~l~--~~~~ 320 (600)
.. .......+...+...-...+++|++|+++... .. ....++..+. ....
T Consensus 254 ------------k~--~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 ------------KY--IGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp ------------SS--SSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ------------cc--chHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 00 11222222333333334689999999995311 00 1122222221 1224
Q ss_pred CcEEEEeccChHHHhh-c-Cc---cceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 321 GSKIVVTHRNQGVAET-M-RA---VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 321 gs~IlvTtR~~~v~~~-~-~~---~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
+..||.||........ + .+ ...+.+...+.++-.++|..+...-.. ...-+ ...|++.+.|+-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 5677777765432211 1 11 256788888888888888766543211 11122 345667777753
No 64
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.67 E-value=9.6e-05 Score=68.73 Aligned_cols=119 Identities=17% Similarity=0.152 Sum_probs=60.5
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCC
Q 039283 192 DKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQC 271 (600)
Q Consensus 192 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~ 271 (600)
.++.+.+++..... ......+.|+|++|+|||+||+.+++... .....++++++. ++...+...+..
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~--- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANELA--KRNVSSLIVYVP------ELFRELKHSLQD--- 103 (202)
T ss_dssp HHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEEEHH------HHHHHHHHC------
T ss_pred HHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEhH------HHHHHHHHHhcc---
Confidence 44555666654321 11226889999999999999999987432 233345566542 344444332211
Q ss_pred CCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHh--hcC-CCCCC-CCCcEEEEeccCh
Q 039283 272 TDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRA--LSC-PFGAG-ASGSKIVVTHRNQ 331 (600)
Q Consensus 272 ~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~IlvTtR~~ 331 (600)
.........+.. .-+|||||++......|.. +.. .+... ..+..+|+||...
T Consensus 104 ---~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~ 159 (202)
T 2w58_A 104 ---QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFD 159 (202)
T ss_dssp ---CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSC
T ss_pred ---chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 112222333322 2399999996543333221 111 11111 2345688887643
No 65
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00036 Score=72.30 Aligned_cols=97 Identities=20% Similarity=0.166 Sum_probs=58.1
Q ss_pred CccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..+.|-+..+++|.+.+.-+-. -+-..++-+.++|++|+|||+||+++++.. ...| +.++.+.-.+
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~--~~~~---~~v~~~~l~~-- 244 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST--KAAF---IRVNGSEFVH-- 244 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH--TCEE---EEEEGGGTCC--
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh--CCCe---EEEecchhhc--
Confidence 4578999888888776632100 012345679999999999999999998742 2222 3344332111
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCC
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVW 301 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~ 301 (600)
.. .......+...+...-...+++|++|+++
T Consensus 245 ------------~~--~Ge~e~~ir~lF~~A~~~aP~IifiDEiD 275 (428)
T 4b4t_K 245 ------------KY--LGEGPRMVRDVFRLARENAPSIIFIDEVD 275 (428)
T ss_dssp ------------SS--CSHHHHHHHHHHHHHHHTCSEEEEEECTH
T ss_pred ------------cc--cchhHHHHHHHHHHHHHcCCCeeechhhh
Confidence 00 12222333333333445679999999983
No 66
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.63 E-value=3.6e-05 Score=75.19 Aligned_cols=51 Identities=29% Similarity=0.302 Sum_probs=35.5
Q ss_pred CccccccchHHHHHHHHhcCCC------CCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 184 DEVYGREKDKEAIVELLLRDDL------RADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++|.+..++.|.+.+..-.. .+....+-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4589999988888876641000 00011234789999999999999999874
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.53 E-value=5.4e-05 Score=66.79 Aligned_cols=38 Identities=18% Similarity=0.114 Sum_probs=27.0
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVS 250 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 250 (600)
...+.|+|+.|+|||||++.++...... . ...++++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~-g-~~~~~~~~~ 73 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEA-G-KNAAYIDAA 73 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTT-T-CCEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhc-C-CcEEEEcHH
Confidence 3589999999999999999998744321 1 125566544
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.51 E-value=0.00034 Score=78.94 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=86.7
Q ss_pred CccccccchHHHHHHHHhcCCCC---CCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLR---ADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~---~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
..++|.+..++.+...+...... .......+.++|++|+|||+||+.+.+.. ...-...+.++++.-.+..
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~~---- 564 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEKH---- 564 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSSC----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhccccc----
Confidence 45899999998888887643210 11233479999999999999999998742 1212234455554322100
Q ss_pred HHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCC-----------CCCCcEEEEecc
Q 039283 261 SILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGA-----------GASGSKIVVTHR 329 (600)
Q Consensus 261 ~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~IlvTtR 329 (600)
......+...++. ....+|+||++..........+...+.. ...++.||+||.
T Consensus 565 -------------~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 565 -------------STSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp -------------CCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred -------------ccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 0001111122221 2345999999987766655555443322 123568888887
Q ss_pred Ch-----HH----Hhhc-----Ccc-ceeecCCCCHHHHHHHHHHh
Q 039283 330 NQ-----GV----AETM-----RAV-STKTLKELSDDDCLRVLIQH 360 (600)
Q Consensus 330 ~~-----~v----~~~~-----~~~-~~~~l~~L~~~ea~~Lf~~~ 360 (600)
.. .+ ...+ ... ..+.+.+++.++...++...
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 31 11 1111 111 47788888888877777554
No 69
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.48 E-value=0.002 Score=62.17 Aligned_cols=184 Identities=14% Similarity=0.124 Sum_probs=92.2
Q ss_pred CccccccchHHHHHHHHh---cCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLL---RDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..++|.+..+++|.+.+. .... .+....+-+.|+|++|+||||||+.+.+.. ...| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCCE---EEEeHHHHHH---
Confidence 458999887777765542 1110 001123458899999999999999998732 2122 3333221110
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh--------------hhHHhhcCCCC--CCCCC
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY--------------NSWRALSCPFG--AGASG 321 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~g 321 (600)
.. ...........+.......+.++++|+++.... .....+...+. ....+
T Consensus 84 -------~~------~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 -------MF------VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -------SC------CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -------Hh------hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 00 111222333344444456778999999832100 11112221111 11234
Q ss_pred cEEEEeccChHHH-hhc-C---ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcC-chhHHHH
Q 039283 322 SKIVVTHRNQGVA-ETM-R---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKG-LPLAAKT 393 (600)
Q Consensus 322 s~IlvTtR~~~v~-~~~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~G-lPLai~~ 393 (600)
..||.||...... ... . -...+.+...+.++-.+++........ ..... ....++..+.| ++--|..
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~-l~~~~----~~~~la~~~~G~~~~dl~~ 223 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP-LAPDI----DAAIIARGTPGFSGADLAN 223 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCTTC----CHHHHHHTCTTCCHHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC-CCccc----cHHHHHHHcCCCCHHHHHH
Confidence 5666666654311 111 1 124677778888888888876653211 11111 12346667777 6654443
No 70
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.00034 Score=72.53 Aligned_cols=178 Identities=15% Similarity=0.142 Sum_probs=94.3
Q ss_pred CccccccchHHHHHHHHhc----CCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLR----DDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~----~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..+.|-+..+++|.+.+.- ++. .+-..++-|.++||+|+|||.||+++++. ....| +.++.+.-.
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~--- 252 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLV--- 252 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhh---
Confidence 4578999988888776422 110 02245678999999999999999999873 22222 333332211
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCC-------Ch---h----hHHhhcCCCCC--CCC
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE-------NY---N----SWRALSCPFGA--GAS 320 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~-------~~---~----~~~~l~~~l~~--~~~ 320 (600)
... .......+...+...-...+++|++|+++.. .. . ....++..+.. ...
T Consensus 253 -----------~~~--vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 253 -----------QMY--IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp -----------SSC--SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred -----------hcc--cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 000 1122222222222233357899999998320 00 0 11122222221 123
Q ss_pred CcEEEEeccChHHHh-hc-C---ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCc
Q 039283 321 GSKIVVTHRNQGVAE-TM-R---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 387 (600)
Q Consensus 321 gs~IlvTtR~~~v~~-~~-~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~Gl 387 (600)
+..||.||....... .+ . -...+.++..+.++-.++|..+.-.-.. ...-+ ...|++.+.|+
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 556666776543221 11 1 1256888888888888888765432111 11112 34566777765
No 71
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.45 E-value=0.0015 Score=68.82 Aligned_cols=179 Identities=14% Similarity=0.126 Sum_probs=96.2
Q ss_pred CccccccchHHHHHHHHhc---CC---CCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHH
Q 039283 184 DEVYGREKDKEAIVELLLR---DD---LRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFT 257 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~---~~---~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~ 257 (600)
..++|.+..++++.+.+.. .. .-+....+-+.|+|++|+|||+||+.++... ...| +.++.+.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~--~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA--NVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH--TCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc--CCCe---eeCCHHHHHHH--
Confidence 3589999877777665432 10 0011123458899999999999999998732 2122 23333321110
Q ss_pred HHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh--------------hhHHhhcCCCC--CCCCC
Q 039283 258 VSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY--------------NSWRALSCPFG--AGASG 321 (600)
Q Consensus 258 ~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~g 321 (600)
+ ...........+.......+.+|+||+++.... .....+...+. ....+
T Consensus 89 --------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 --------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --------H------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 111122233444555557899999999954211 11222222221 11235
Q ss_pred cEEEEeccChHHHh-h-cC--c-cceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 322 SKIVVTHRNQGVAE-T-MR--A-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 322 s~IlvTtR~~~v~~-~-~~--~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
..||.||....... . .. . ...+.+...+.++-.+++..+...... ..... ...|+..+.|+.
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-AEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-cchhh----HHHHHHhcCCCc
Confidence 66777776654322 1 11 1 236788888888888888766533211 11111 344777888877
No 72
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.45 E-value=0.00043 Score=74.65 Aligned_cols=165 Identities=19% Similarity=0.184 Sum_probs=79.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
..++|-+.-...+.+.+.-...........+.|+|++|+||||||+.+.... ...| .-++++...+...+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhHHH
Confidence 3478888777776554421110011245689999999999999999998632 2222 2233333222111111111
Q ss_pred HHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChh----hHHhhcCCCCCCC---------------CCcEE
Q 039283 264 NSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN----SWRALSCPFGAGA---------------SGSKI 324 (600)
Q Consensus 264 ~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~----~~~~l~~~l~~~~---------------~gs~I 324 (600)
..++. ........+..... ..-+|+||++...... ....+...+.... ....|
T Consensus 156 ~~ig~-------~~~~~~~~~~~a~~-~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 156 TYVGA-------MPGRIIQGMKKAGK-LNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ---------------CHHHHHHTTCS-SSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred HHhcc-------CchHHHHHHHHhhc-cCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 11110 11111222222222 3348889999764432 1233333332110 34567
Q ss_pred EEeccChHHH--hhcCccceeecCCCCHHHHHHHHHHhh
Q 039283 325 VVTHRNQGVA--ETMRAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 325 lvTtR~~~v~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
|.||...... ........+.+.+++.++-..++..+.
T Consensus 228 I~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTH
T ss_pred EeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHH
Confidence 7676653211 111223578999999999988887754
No 73
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.39 E-value=0.0015 Score=67.73 Aligned_cols=179 Identities=14% Similarity=0.103 Sum_probs=96.3
Q ss_pred CccccccchHHHHHHHHhc----CCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLR----DDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~----~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..+.|-+..+++|.+.+.- ++. -+-..++-|.++|++|+|||.||+++++. ....| +.++.+.-.
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~--- 280 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELV--- 280 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGC---
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhh---
Confidence 3578888888888776421 100 01245678999999999999999999873 22222 333332211
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh------h--------hHHhhcCCCC--CCCC
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY------N--------SWRALSCPFG--AGAS 320 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~------~--------~~~~l~~~l~--~~~~ 320 (600)
... .......+...+...-...+++|++|++..... . ....++..+. ....
T Consensus 281 -----------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 281 -----------QKY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp -----------CCS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred -----------ccc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 010 122222333333344456799999999953210 0 1111222111 1223
Q ss_pred CcEEEEeccChHHHh-h-c--C-ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 321 GSKIVVTHRNQGVAE-T-M--R-AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 321 gs~IlvTtR~~~v~~-~-~--~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
+..||.||....... . . + -...+.+...+.++-.++|..+...-.. ...-+ ...|++.|.|.-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-ERGIR----WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-CSSCC----HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-CCCCC----HHHHHHHCCCCC
Confidence 455666765432211 1 1 1 2357888888888888888776533211 11112 345667777753
No 74
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.37 E-value=0.0009 Score=62.78 Aligned_cols=86 Identities=19% Similarity=0.103 Sum_probs=52.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhh-----------cCCCCCcccHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIA-----------SDQCTDKDDLN 278 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~-----------~~~~~~~~~~~ 278 (600)
.-.++.|+|++|+|||||+..+.. ..-..++|++....++...+.. +...++ ........+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999998876 1234577888776556554433 333221 11111222333
Q ss_pred HHHHHHHHHhCCCcEEEEEecCC
Q 039283 279 LLQEKLKKQLSGKKFLLVLDDVW 301 (600)
Q Consensus 279 ~l~~~l~~~L~~k~~LlVlDdv~ 301 (600)
.....+...+..++-+||+|.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 44555555554457799999984
No 75
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00082 Score=68.95 Aligned_cols=178 Identities=16% Similarity=0.131 Sum_probs=94.2
Q ss_pred CccccccchHHHHHHHHhc----CCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLR----DDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~----~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..+-|-++.+++|.+.+.- ++. .+-..++-|.++|++|+|||.||+++++.. ...| +.++.+.-.
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~--~~~f---i~v~~s~l~--- 253 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT--SATF---LRIVGSELI--- 253 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH--TCEE---EEEESGGGC---
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh--CCCE---EEEEHHHhh---
Confidence 3477888888888776532 110 022345789999999999999999998742 2222 233322111
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh--------------hhHHhhcCCCC--CCCC
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY--------------NSWRALSCPFG--AGAS 320 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~ 320 (600)
... .......+...+...-...+++|++|+++.... .....++..+. ....
T Consensus 254 -----------sk~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 254 -----------QKY--LGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp -----------CSS--SSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------hcc--CchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 110 112222222333333346789999999853110 01112222111 1224
Q ss_pred CcEEEEeccChHHHh-hc-C--c-cceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCc
Q 039283 321 GSKIVVTHRNQGVAE-TM-R--A-VSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGL 387 (600)
Q Consensus 321 gs~IlvTtR~~~v~~-~~-~--~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~Gl 387 (600)
+..||.||....... .+ . . ...+.+...+.++-.++|..+...-. ....-+ ...|++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~-l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN-LSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC-BCSCCC----HHHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC-CCCcCC----HHHHHHhCCCC
Confidence 556677776543322 11 1 1 24677888888888888876653321 111222 34566677665
No 76
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.36 E-value=0.00069 Score=68.20 Aligned_cols=152 Identities=13% Similarity=0.054 Sum_probs=84.1
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.++|++..++.+...+... ..+.|+|++|+|||+||+.+.+.. ... ...+.........++...
T Consensus 28 ~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~~~--~~~---~~~i~~~~~~~~~~l~g~--- 91 (331)
T 2r44_A 28 VVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAKTM--DLD---FHRIQFTPDLLPSDLIGT--- 91 (331)
T ss_dssp TCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHHHT--TCC---EEEEECCTTCCHHHHHEE---
T ss_pred ceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHHHh--CCC---eEEEecCCCCChhhcCCc---
Confidence 4789999999998888653 268899999999999999987632 211 223444333333322111
Q ss_pred HhhcCCCCCcccHHHHHHHHHHHhCC--CcEEEEEecCCCCChhhHHhhcCCCCC-----------CCCCcEEEEeccCh
Q 039283 265 SIASDQCTDKDDLNLLQEKLKKQLSG--KKFLLVLDDVWNENYNSWRALSCPFGA-----------GASGSKIVVTHRNQ 331 (600)
Q Consensus 265 ~l~~~~~~~~~~~~~l~~~l~~~L~~--k~~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~IlvTtR~~ 331 (600)
........... ...+ ...+|++|++..........+...+.. ......|+.|+...
T Consensus 92 -~~~~~~~~~~~----------~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~ 160 (331)
T 2r44_A 92 -MIYNQHKGNFE----------VKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPV 160 (331)
T ss_dssp -EEEETTTTEEE----------EEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTT
T ss_pred -eeecCCCCceE----------eccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCC
Confidence 00000000000 0001 125899999977665544443332211 12345555555522
Q ss_pred H------H-HhhcCccc-eeecCCCCHHHHHHHHHHhhcC
Q 039283 332 G------V-AETMRAVS-TKTLKELSDDDCLRVLIQHSLG 363 (600)
Q Consensus 332 ~------v-~~~~~~~~-~~~l~~L~~~ea~~Lf~~~a~~ 363 (600)
. + ........ .+.+.+.+.++-.+++.+....
T Consensus 161 ~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 161 EQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred cccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhcccc
Confidence 1 0 11112223 5889999999999999887643
No 77
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.30 E-value=0.00056 Score=77.24 Aligned_cols=133 Identities=20% Similarity=0.204 Sum_probs=72.3
Q ss_pred CccccccchHHHHHHHHhcCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHH
Q 039283 184 DEVYGREKDKEAIVELLLRDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSK 260 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~ 260 (600)
..++|.+..++.+...+..... ........+.++|++|+|||+||+.+.+.. . ...+-++++.-.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l--~---~~~~~i~~s~~~~~~~--- 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERHT--- 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH--T---CEEEEEEGGGCSSSSC---
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh--c---CCEEEEechhhcchhh---
Confidence 3578999988888877753210 012334579999999999999999998743 1 2234455443221100
Q ss_pred HHHHHhhcCCCCCcccH---HHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCC-----------CCCcEEEE
Q 039283 261 SILNSIASDQCTDKDDL---NLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAG-----------ASGSKIVV 326 (600)
Q Consensus 261 ~il~~l~~~~~~~~~~~---~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~-----------~~gs~Ilv 326 (600)
...+.+..+ ..... ..+...++. ....+|+||++..........+...+..+ -.++.||+
T Consensus 530 --~~~l~g~~~-g~~g~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~ 603 (758)
T 1r6b_X 530 --VSRLIGAPP-GYVGFDQGGLLTDAVIK---HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_dssp --CSSSCCCCS-CSHHHHHTTHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEE
T ss_pred --HhhhcCCCC-CCcCccccchHHHHHHh---CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEE
Confidence 001111111 11111 112222222 34679999999877666665555444321 13455777
Q ss_pred eccC
Q 039283 327 THRN 330 (600)
Q Consensus 327 TtR~ 330 (600)
||..
T Consensus 604 tsN~ 607 (758)
T 1r6b_X 604 TTNA 607 (758)
T ss_dssp EECS
T ss_pred ecCc
Confidence 7754
No 78
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.30 E-value=0.0038 Score=69.68 Aligned_cols=179 Identities=14% Similarity=0.137 Sum_probs=98.6
Q ss_pred CccccccchHHHHHHHHh----cCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLL----RDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~----~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..+.|-++.+++|.+++. .++. -+-..++-|.++|++|+|||+||+.+++.. ..+| +.++.+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el--g~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET--GAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT--TCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCeE---EEEEhH------
Confidence 347888988888887753 1110 022456789999999999999999998732 2222 333321
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh-------h----hHHhhcCCCCC--CCCCcE
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY-------N----SWRALSCPFGA--GASGSK 323 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~-------~----~~~~l~~~l~~--~~~gs~ 323 (600)
++. ... .......+...+.......+++|+||+++.... . ....+...+.. ...+..
T Consensus 273 ----~l~----sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 273 ----EIM----SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp ----HHH----SSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred ----Hhh----ccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 111 111 223334445555555667899999999953210 0 11122221111 112445
Q ss_pred EEEeccChH-HHhhcC----ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 324 IVVTHRNQG-VAETMR----AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 324 IlvTtR~~~-v~~~~~----~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
||.||.... +-..+. -...+.+...+.++-.++|..+...... ....+ ...|++++.|.-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-ADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-CTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhcCCCC
Confidence 555655432 222221 1256888888888888888766532211 11222 345677777764
No 79
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.23 E-value=0.00035 Score=69.15 Aligned_cols=26 Identities=27% Similarity=0.265 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++.+.|+|++|+|||+||+.+++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44568899999999999999999874
No 80
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.19 E-value=0.00086 Score=76.59 Aligned_cols=136 Identities=15% Similarity=0.194 Sum_probs=73.1
Q ss_pred ccccccchHHHHHHHHhcCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHH
Q 039283 185 EVYGREKDKEAIVELLLRDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 261 (600)
.++|.+..++.+...+..... ........+.|+|++|+|||+||+.+.+... ..-...+.++++...... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchh-H---
Confidence 479999999888888754211 0122346899999999999999999987421 111123445544332210 0
Q ss_pred HHHHhhcCCC-C-CcccHHHHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCC-----------CCcEEEEec
Q 039283 262 ILNSIASDQC-T-DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGA-----------SGSKIVVTH 328 (600)
Q Consensus 262 il~~l~~~~~-~-~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTt 328 (600)
...+.+..+ . .......+...+.. ...-+|+||++..........+...+..+. .++.||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 011111000 0 00001122223322 234699999998777666666665554331 245577777
Q ss_pred cC
Q 039283 329 RN 330 (600)
Q Consensus 329 R~ 330 (600)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 65
No 81
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.15 E-value=0.00035 Score=69.00 Aligned_cols=68 Identities=19% Similarity=0.346 Sum_probs=44.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEe--CCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCV--SEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~v--s~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
.+++.|+|++|+|||+||.++... .-..++|+++ .+..+. ...+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHHH
Confidence 357789999999999999998764 1223457776 332111 0134455555566666
Q ss_pred CCCcEEEEEecCC
Q 039283 289 SGKKFLLVLDDVW 301 (600)
Q Consensus 289 ~~k~~LlVlDdv~ 301 (600)
...+ +||+|++.
T Consensus 181 ~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 181 LQHR-VIVIDSLK 192 (331)
T ss_dssp HHCS-EEEEECCT
T ss_pred hhCC-EEEEeccc
Confidence 5555 99999994
No 82
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.96 E-value=0.0033 Score=61.84 Aligned_cols=85 Identities=13% Similarity=0.103 Sum_probs=54.9
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHH-HHHHHH
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLL-QEKLKK 286 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l-~~~l~~ 286 (600)
.++.|.|++|+|||||+.++.........-..++|++....++.. .++.++..... .+.+.++. .+.+..
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 378999999999999998877643221112457899988887763 25666643221 23455555 443333
Q ss_pred H--h-CCCcEEEEEecCC
Q 039283 287 Q--L-SGKKFLLVLDDVW 301 (600)
Q Consensus 287 ~--L-~~k~~LlVlDdv~ 301 (600)
. + ++++-|||+|-+-
T Consensus 104 l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHTCCTTCCEEEEEECST
T ss_pred HHHhhccCceEEEEeccc
Confidence 2 2 4578899999994
No 83
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.92 E-value=0.0028 Score=64.00 Aligned_cols=86 Identities=22% Similarity=0.197 Sum_probs=56.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l~ 285 (600)
.-.++.|.|++|+|||||+..+..... ..-..++|++....++.. .++.++..... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~--~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQ--KMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 457999999999999999998886432 222346788877766654 44455432211 2345566666666
Q ss_pred HHhC-CCcEEEEEecCCC
Q 039283 286 KQLS-GKKFLLVLDDVWN 302 (600)
Q Consensus 286 ~~L~-~k~~LlVlDdv~~ 302 (600)
..++ .+.-++|+|.+-.
T Consensus 133 ~l~~~~~~dlvVIDSi~~ 150 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVAA 150 (356)
T ss_dssp HHHHTSCCSEEEEECTTT
T ss_pred HHhhhcCCCeEEehHhhh
Confidence 5554 4566999999843
No 84
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.82 E-value=0.026 Score=54.12 Aligned_cols=51 Identities=31% Similarity=0.287 Sum_probs=32.6
Q ss_pred CccccccchHHHHHHHHhcCCC------CCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 184 DEVYGREKDKEAIVELLLRDDL------RADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+++|.+..+.++.+....-.. -+-.-.+-+.|+|++|+|||||++.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4588888766666554321100 00011123899999999999999999874
No 85
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.76 E-value=0.0041 Score=63.69 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=34.4
Q ss_pred ccccccchHHHHHHHHhc----CC--------------------CCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 185 EVYGREKDKEAIVELLLR----DD--------------------LRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~----~~--------------------~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++|.+..++.|...+.. .. .........+.|+|++|+|||++|+.+.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHH
Confidence 478888888888776620 00 000112356889999999999999999863
No 86
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.72 E-value=0.01 Score=62.88 Aligned_cols=176 Identities=15% Similarity=0.131 Sum_probs=90.5
Q ss_pred CCccccccchHHHHHHHHh---cCCC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 183 EDEVYGREKDKEAIVELLL---RDDL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~---~~~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
-.+++|.+..+.++.+... .... -+-.-.+-+.|+|++|+|||+||+.++.... ...+.++.+.-..
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH--
Confidence 3468999887777666542 2100 0001123489999999999999999987422 1223344321100
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC----CCcEEEEEecCCCCC----------hhh----HHhhcCCCCCC
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS----GKKFLLVLDDVWNEN----------YNS----WRALSCPFGAG 318 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~----~k~~LlVlDdv~~~~----------~~~----~~~l~~~l~~~ 318 (600)
.. . ......+...++ ..+.++++|++.... ... ...+...+...
T Consensus 103 ------------~~--~----g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 ------------MF--V----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ------------SC--T----THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ------------hh--h----hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 00 0 011122223332 346899999994321 111 12232222211
Q ss_pred --CCCcEEEEeccChHHHhh--cC---ccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 319 --ASGSKIVVTHRNQGVAET--MR---AVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 319 --~~gs~IlvTtR~~~v~~~--~~---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
..+..++.||..+..... .. -...+.+...+.++-.+++..++-.. ...... ....|+..+.|+.
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv----~l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDV----DLALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSS----TTHHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHH----HHHHHHHhcCCCC
Confidence 234556666666544221 11 12467888889988888887665321 111111 1345667777765
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.72 E-value=0.01 Score=67.08 Aligned_cols=156 Identities=15% Similarity=0.136 Sum_probs=84.4
Q ss_pred CccccccchHHHHHHHHhcC----CC---CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 184 DEVYGREKDKEAIVELLLRD----DL---RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~----~~---~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..++|.+..+++|.+++... .. -.-.....|.|+|++|+||||||+.+... ....| +.++..
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~------ 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch------
Confidence 45899999999998887531 00 01134457999999999999999999763 22222 333321
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCCh------h-----hHHhhc---CCCCCCCCCc
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENY------N-----SWRALS---CPFGAGASGS 322 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~------~-----~~~~l~---~~l~~~~~gs 322 (600)
.+.... .......+...+.......+.++++|++..... . ....+. ..+.. ..+.
T Consensus 273 --------~l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~-~~~v 341 (806)
T 1ypw_A 273 --------EIMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ-RAHV 341 (806)
T ss_dssp --------HHSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCT-TSCC
T ss_pred --------Hhhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcc-cccE
Confidence 111110 111122233333444445788999999942110 0 011121 11221 1345
Q ss_pred EEEEeccChH-HHhhcC---c-cceeecCCCCHHHHHHHHHHhh
Q 039283 323 KIVVTHRNQG-VAETMR---A-VSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 323 ~IlvTtR~~~-v~~~~~---~-~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
.+|.||.... +...+. . ...+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5666665532 111111 1 2456788888899888887665
No 88
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.69 E-value=0.0012 Score=60.23 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=59.8
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC---CCHHHHHHHHHHHhhcC-------CCCCc-------
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED---FDVFTVSKSILNSIASD-------QCTDK------- 274 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~---~~~~~~l~~il~~l~~~-------~~~~~------- 274 (600)
..|.|++..|.||||+|-...- +...+=..+.++...+. .....+ ++.+... ..-..
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~----l~~L~v~~~~~g~gf~~~~~~~~~~~ 102 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNL----LEPHGVEFQVMATGFTWETQNREADT 102 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHH----HGGGTCEEEECCTTCCCCGGGHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHH----HHhCCcEEEEcccccccCCCCcHHHH
Confidence 4677777777999999955543 33344334555544332 222333 3333200 00001
Q ss_pred ccHHHHHHHHHHHhCCCcE-EEEEecCCC---CChhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 275 DDLNLLQEKLKKQLSGKKF-LLVLDDVWN---ENYNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 275 ~~~~~l~~~l~~~L~~k~~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
..........++.+.+.+| |||||++-. -.....+++...+........||+|+|+.
T Consensus 103 ~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 103 AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1122333445566655555 999999821 11122334444444444567899999986
No 89
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.69 E-value=0.0065 Score=61.35 Aligned_cols=90 Identities=14% Similarity=0.155 Sum_probs=53.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhhcCC-----------CCCc
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQR----HFQIKAWTCVSEDFDVFTVSKSILNSIASDQ-----------CTDK 274 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~-----------~~~~ 274 (600)
.-.++.|+|++|+|||+||..++....... .-..++|++....++...+.. ++..++... ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 457999999999999999988876422211 224678999888777665543 344443211 1011
Q ss_pred ccHHHHHHHHHHHhC---CCcEEEEEecC
Q 039283 275 DDLNLLQEKLKKQLS---GKKFLLVLDDV 300 (600)
Q Consensus 275 ~~~~~l~~~l~~~L~---~k~~LlVlDdv 300 (600)
.....+...+...+. .+.-+||+|.+
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 222233333444443 45668888887
No 90
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.68 E-value=0.0058 Score=62.05 Aligned_cols=85 Identities=19% Similarity=0.148 Sum_probs=55.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l~ 285 (600)
.-.++.|.|++|+||||||..+..... ..-..++|++....++.. .+..++..... ...+.+++.+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 346899999999999999988876432 223467899988776643 23444432110 2345566666666
Q ss_pred HHhC-CCcEEEEEecCC
Q 039283 286 KQLS-GKKFLLVLDDVW 301 (600)
Q Consensus 286 ~~L~-~k~~LlVlDdv~ 301 (600)
...+ ...-+||+|.+-
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 6654 345699999984
No 91
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.68 E-value=0.01 Score=57.86 Aligned_cols=154 Identities=15% Similarity=0.073 Sum_probs=76.4
Q ss_pred ccccccchHHHHHHHHhcCC--------CCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 185 EVYGREKDKEAIVELLLRDD--------LRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~--------~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
.+.|-++.++.|.+.+..+- ..-..... +.|+|++|+||||||+.++..... ..+.++...-.+.
T Consensus 11 di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~- 83 (274)
T 2x8a_A 11 DIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM- 83 (274)
T ss_dssp -CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS-
T ss_pred HhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh-
Confidence 46677776766665432100 00011222 999999999999999999863221 2344443221110
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHH-HhCCCcEEEEEecCCCCCh-----------hhHHhhcCCCCCC--CCCc
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKK-QLSGKKFLLVLDDVWNENY-----------NSWRALSCPFGAG--ASGS 322 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~-~L~~k~~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~gs 322 (600)
...........+.+ .-...++++++|++..... .....+...+..+ ....
T Consensus 84 ----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~ 147 (274)
T 2x8a_A 84 ----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQV 147 (274)
T ss_dssp ----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCE
T ss_pred ----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCE
Confidence 00001111112222 2234678999999954210 0011111112111 2234
Q ss_pred EEEEeccChHHHhhc-----CccceeecCCCCHHHHHHHHHHhh
Q 039283 323 KIVVTHRNQGVAETM-----RAVSTKTLKELSDDDCLRVLIQHS 361 (600)
Q Consensus 323 ~IlvTtR~~~v~~~~-----~~~~~~~l~~L~~~ea~~Lf~~~a 361 (600)
.++.+|..+.+.... .-...+.+...+.++-.++|....
T Consensus 148 i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 148 FIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 455666655433211 123567788888888888887654
No 92
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.64 E-value=0.062 Score=52.21 Aligned_cols=180 Identities=14% Similarity=0.119 Sum_probs=86.9
Q ss_pred CCccccccchHHHHHHHHhcCCC------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 183 EDEVYGREKDKEAIVELLLRDDL------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 183 ~~~~vGR~~e~~~l~~~L~~~~~------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
-.+++|.+..+.++.+....-.. -+-.-.+-+.|+|++|+|||||++.++.... ...+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~------ 107 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGS------ 107 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHH------
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHH------
Confidence 34688988777766655422100 0001112389999999999999999987432 122333221
Q ss_pred HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCC----------Chhh----HHhhcCCCCCCC--C
Q 039283 257 TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE----------NYNS----WRALSCPFGAGA--S 320 (600)
Q Consensus 257 ~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~----------~~~~----~~~l~~~l~~~~--~ 320 (600)
+ +.... .......+...+...-...+.++++|++... .... ...+...+..+. .
T Consensus 108 ~----~~~~~------~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~ 177 (278)
T 1iy2_A 108 D----FVEMF------VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT 177 (278)
T ss_dssp H----HHHST------TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC
T ss_pred H----HHHHH------hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC
Confidence 1 11100 0011111222222222346789999998311 0011 122222222221 2
Q ss_pred CcEEEEeccChHHHhh--c---CccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhhcCch
Q 039283 321 GSKIVVTHRNQGVAET--M---RAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKCKGLP 388 (600)
Q Consensus 321 gs~IlvTtR~~~v~~~--~---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~~GlP 388 (600)
...++.||..+..... . .-...+.+...+.++-.+++...+... ....... ...++..+.|+.
T Consensus 178 ~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~-~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 178 AIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred CEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC-CCCcccC----HHHHHHHcCCCC
Confidence 2344445554432211 1 123567888888888888887665321 1111111 334666777755
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=96.64 E-value=0.03 Score=56.38 Aligned_cols=158 Identities=11% Similarity=-0.038 Sum_probs=97.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHH-Hh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKK-QL 288 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~-~L 288 (600)
-.++..++|+.|.||++.++.+..... ...|+....+.+....++ .++.+.+.. -+
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~----------------------~~l~~~~~~~pl 73 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDW----------------------NAIFSLCQAMSL 73 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCH----------------------HHHHHHHHHHHH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCH----------------------HHHHHHhcCcCC
Confidence 346899999999999999988876432 223432222222222233 222222221 12
Q ss_pred CCCcEEEEEecCCC-CChhhHHhhcCCCCCCCCCcEEEEeccC-------hHHHhh-cCccceeecCCCCHHHHHHHHHH
Q 039283 289 SGKKFLLVLDDVWN-ENYNSWRALSCPFGAGASGSKIVVTHRN-------QGVAET-MRAVSTKTLKELSDDDCLRVLIQ 359 (600)
Q Consensus 289 ~~k~~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~IlvTtR~-------~~v~~~-~~~~~~~~l~~L~~~ea~~Lf~~ 359 (600)
-+++-++|+|+++. .+...++.+...+....+++.+|+++.. ..+... ......+...+++.++....+.+
T Consensus 74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 35667889999976 5556677777666655567777766543 122222 23446788999999999888877
Q ss_pred hhcCCCCCCCChhHHHHHHHHHHhhcCchhHHHHH
Q 039283 360 HSLGARDFNIPQSLKEVAEKIVKKCKGLPLAAKTL 394 (600)
Q Consensus 360 ~a~~~~~~~~~~~l~~~~~~I~~~~~GlPLai~~~ 394 (600)
.+-..+. .. ..+.+..|++.++|.+..+...
T Consensus 154 ~~~~~g~-~i---~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 154 RAKQLNL-EL---DDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHTTC-EE---CHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHcCC-CC---CHHHHHHHHHHhchHHHHHHHH
Confidence 6532221 11 2366888999999998877653
No 94
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.62 E-value=0.0049 Score=58.63 Aligned_cols=90 Identities=12% Similarity=0.079 Sum_probs=51.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhc----cCCceEEEEeCCCCCHHHHHHHHHHHhhcCC-----------CCCc
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQR----HFQIKAWTCVSEDFDVFTVSKSILNSIASDQ-----------CTDK 274 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~----~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~-----------~~~~ 274 (600)
.-.++.|+|++|+|||||+..+........ .-..++|++....++...+. .++..++... ....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346999999999999999998876321111 13467888877655554432 3344443211 0011
Q ss_pred ccHHHHHHHHHHHhC-CCcEEEEEecC
Q 039283 275 DDLNLLQEKLKKQLS-GKKFLLVLDDV 300 (600)
Q Consensus 275 ~~~~~l~~~l~~~L~-~k~~LlVlDdv 300 (600)
.........+.+.+. .++-+||+|.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 111222333444443 46779999988
No 95
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.60 E-value=0.001 Score=62.66 Aligned_cols=114 Identities=9% Similarity=-0.078 Sum_probs=62.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHHHh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT-DKDDLNLLQEKLKKQL 288 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~-~~~~~~~l~~~l~~~L 288 (600)
.-.++.|+|+.|+||||++..+..... .+-..++.+..... .. ....+++.++..... ......++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 346899999999999999977766432 22223344433322 11 112334444332211 1123345555666555
Q ss_pred CCCcE-EEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 289 SGKKF-LLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 289 ~~k~~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
.+.++ +||+|.+...+.+..+.+. .+.+ .|..||+|.+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEeccc
Confidence 54444 9999999654433333332 2222 267899998854
No 96
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.59 E-value=0.0035 Score=62.26 Aligned_cols=43 Identities=16% Similarity=0.158 Sum_probs=30.1
Q ss_pred cchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhh
Q 039283 190 EKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 190 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...+..+.+++.... .+....+.|+|++|+|||+||..+++..
T Consensus 134 ~~~~~~~~~~i~~~~---~~~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 134 MEAFSAILDFVEQYP---SAEQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp HHHHHHHHHHHHHCS---CSSCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc---ccCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 334455666665432 1124678999999999999999998743
No 97
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.55 E-value=0.0073 Score=61.02 Aligned_cols=85 Identities=21% Similarity=0.152 Sum_probs=54.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l~ 285 (600)
.-.++.|+|++|+||||||.++..... ..-..++|++....++.. .++.++..... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~--~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQ--AAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--hCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 446899999999999999988876432 223457899988766643 23444422110 2234556555555
Q ss_pred HHhC-CCcEEEEEecCC
Q 039283 286 KQLS-GKKFLLVLDDVW 301 (600)
Q Consensus 286 ~~L~-~k~~LlVlDdv~ 301 (600)
.... .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 5543 456799999984
No 98
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.38 E-value=0.0095 Score=60.27 Aligned_cols=85 Identities=22% Similarity=0.140 Sum_probs=53.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l~ 285 (600)
.-.++.|.|.+|+||||||.++..... ..-..++|++....++... +..++..... ...+.+++.+.+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~--~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 346899999999999999988876432 2234678999887776432 3444332110 1234455555554
Q ss_pred HHhC-CCcEEEEEecCC
Q 039283 286 KQLS-GKKFLLVLDDVW 301 (600)
Q Consensus 286 ~~L~-~k~~LlVlDdv~ 301 (600)
...+ .+.-+||+|.+-
T Consensus 135 ~l~~~~~~~lVVIDsl~ 151 (356)
T 1u94_A 135 ALARSGAVDVIVVDSVA 151 (356)
T ss_dssp HHHHHTCCSEEEEECGG
T ss_pred HHHhccCCCEEEEcCHH
Confidence 4432 455699999983
No 99
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.31 E-value=0.0094 Score=59.65 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=53.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhcc----CCceEEEEeCCCCCHHHHHHHHHHHhhcCCC--------CCcccH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRH----FQIKAWTCVSEDFDVFTVSKSILNSIASDQC--------TDKDDL 277 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~----F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~--------~~~~~~ 277 (600)
.-.++.|+|++|+|||+||.+++........ -..++|++....++..++.. ++..++.... ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 3468999999999999999888764221111 23678999888777666543 3444432210 011122
Q ss_pred H---HHHHHHHHHhC--CCcEEEEEecC
Q 039283 278 N---LLQEKLKKQLS--GKKFLLVLDDV 300 (600)
Q Consensus 278 ~---~l~~~l~~~L~--~k~~LlVlDdv 300 (600)
+ ++...+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23344444443 45668888887
No 100
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.27 E-value=0.0099 Score=59.42 Aligned_cols=90 Identities=17% Similarity=0.193 Sum_probs=54.0
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhc---------cC-----CceEEEEeCCCCCHHHHHHHHHHHhhcCCC----
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQR---------HF-----QIKAWTCVSEDFDVFTVSKSILNSIASDQC---- 271 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~---------~F-----~~~~wv~vs~~~~~~~~l~~il~~l~~~~~---- 271 (600)
.-.++.|+|++|+|||+||.+++....... .. ..++|++....++..++.. ++..++....
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 447999999999999999988875421111 11 3577999888777766553 3444432210
Q ss_pred ----CCcccHH---HHHHHHHHHhC--CCcEEEEEecC
Q 039283 272 ----TDKDDLN---LLQEKLKKQLS--GKKFLLVLDDV 300 (600)
Q Consensus 272 ----~~~~~~~---~l~~~l~~~L~--~k~~LlVlDdv 300 (600)
....+.+ .+...+...+. .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0112222 23344444444 34568888887
No 101
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.25 E-value=0.0069 Score=57.05 Aligned_cols=115 Identities=15% Similarity=0.008 Sum_probs=59.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC-------------------
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT------------------- 272 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~------------------- 272 (600)
.++.|.|++|+|||||+..+...... .-..+.|++... ....+...+. .++.....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~--~~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLR--DGDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHH--HTCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHH--CCCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 58999999999999999998854322 122455665433 3444433332 33211000
Q ss_pred ---CcccHHHHHHHHHHHhC-CCc--EEEEEecCCCC---ChhhHHhhcCCCCC--CCCCcEEEEeccCh
Q 039283 273 ---DKDDLNLLQEKLKKQLS-GKK--FLLVLDDVWNE---NYNSWRALSCPFGA--GASGSKIVVTHRNQ 331 (600)
Q Consensus 273 ---~~~~~~~l~~~l~~~L~-~k~--~LlVlDdv~~~---~~~~~~~l~~~l~~--~~~gs~IlvTtR~~ 331 (600)
...+..++...+...+. .++ .+||+|..... +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01144555555554442 233 49999998521 22222233222211 12467788888765
No 102
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.13 E-value=0.0051 Score=56.89 Aligned_cols=44 Identities=27% Similarity=0.351 Sum_probs=33.9
Q ss_pred cccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 188 GREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 188 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.|++.++.|.+.+.... .....+++|+|++|+|||||++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35567778888876542 235679999999999999999988763
No 103
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.10 E-value=0.029 Score=55.05 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=45.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhc-cCCceEEEEeCCCCCHHHHHHHHHHHh------hcCCCCCcccHHHHH
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQR-HFQIKAWTCVSEDFDVFTVSKSILNSI------ASDQCTDKDDLNLLQ 281 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~-~F~~~~wv~vs~~~~~~~~l~~il~~l------~~~~~~~~~~~~~l~ 281 (600)
+...+|+|+|+.|+||||||+.+........ .......|+...-+-.......+.... .........+.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999998876443221 122334435443332333334333221 111112456677777
Q ss_pred HHHHHHhCC
Q 039283 282 EKLKKQLSG 290 (600)
Q Consensus 282 ~~l~~~L~~ 290 (600)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 777666554
No 104
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.02 E-value=0.021 Score=56.26 Aligned_cols=87 Identities=13% Similarity=0.073 Sum_probs=45.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE-DFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQL 288 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L 288 (600)
...+++|+|++|+||||++..+......... ..+..+.... .....+.+....+..+.+.. ...+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE-VCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC-BCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE-ecCCHHHHHHHHHH-h
Confidence 3469999999999999999888764332111 1334444322 12233333333333332221 11233344444443 3
Q ss_pred CCCcEEEEEecC
Q 039283 289 SGKKFLLVLDDV 300 (600)
Q Consensus 289 ~~k~~LlVlDdv 300 (600)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 34458889954
No 105
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.94 E-value=0.04 Score=54.76 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=37.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNS 265 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~ 265 (600)
.-.++.|.|.+|+||||||..++.+..... ..++|++.. .+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 346999999999999999988876433222 467777765 4566676666654
No 106
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.88 E-value=0.019 Score=57.92 Aligned_cols=91 Identities=18% Similarity=0.219 Sum_probs=51.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccC----CceEEEEeCCCCCHHHHHHHHHHHhhcC-----------CCCCc
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF----QIKAWTCVSEDFDVFTVSKSILNSIASD-----------QCTDK 274 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F----~~~~wv~vs~~~~~~~~l~~il~~l~~~-----------~~~~~ 274 (600)
.-.++.|+|++|+|||||+..++......... ..++|++....+....+ ..+.+..+.. .....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 45799999999999999999887642111111 23488887665543332 3344333211 00011
Q ss_pred ccHHHHHHHHHHHhC------CCcEEEEEecCC
Q 039283 275 DDLNLLQEKLKKQLS------GKKFLLVLDDVW 301 (600)
Q Consensus 275 ~~~~~l~~~l~~~L~------~k~~LlVlDdv~ 301 (600)
....++...+...+. .++-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 122333444444443 467799999984
No 107
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.84 E-value=0.03 Score=52.46 Aligned_cols=46 Identities=20% Similarity=0.186 Sum_probs=30.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhh---c-cCCceEEEEeCCCCCH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQ---R-HFQIKAWTCVSEDFDV 255 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~---~-~F~~~~wv~vs~~~~~ 255 (600)
.-.+++|+|++|+|||||++.+....... . .-...+|+.....+..
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~ 73 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRP 73 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCH
Confidence 34699999999999999999987522111 1 1234678776554443
No 108
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.82 E-value=0.027 Score=55.95 Aligned_cols=103 Identities=12% Similarity=0.010 Sum_probs=54.0
Q ss_pred cccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHH
Q 039283 186 VYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNS 265 (600)
Q Consensus 186 ~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~ 265 (600)
++|-...+..+...+.... ..+.+.+++|.|+.|+|||||++.+..-......-..+..++...-+-....+... ..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~--~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l~~~-~~ 145 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKP--EPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQ-GL 145 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCC--CCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHHHHT-TC
T ss_pred hhcchHHHHHHHHHHhccC--CCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhhhhH-HH
Confidence 3455555666665555443 24567799999999999999998886532110001123344433222111111110 00
Q ss_pred hhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 266 IASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 266 l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
..........+.+.+.+.+.....++
T Consensus 146 ~~~~g~P~~~D~~~l~~~L~~L~~g~ 171 (321)
T 3tqc_A 146 MKRKGFPESYDMPSLLRVLNAIKSGQ 171 (321)
T ss_dssp GGGTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred HhhccCcccccHHHHHHHHHhhhccc
Confidence 00011114566777777777766665
No 109
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.66 E-value=0.0076 Score=63.84 Aligned_cols=42 Identities=19% Similarity=0.240 Sum_probs=35.6
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++|++..++.+...+... .-|.|+|++|+|||+||+.+.+.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 3789999998888887654 37899999999999999999873
No 110
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.56 E-value=0.033 Score=57.20 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=36.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhh----ccCCceEEEEeCCCCCHHHHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQ----RHFQIKAWTCVSEDFDVFTVSKSILNSIA 267 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~----~~F~~~~wv~vs~~~~~~~~l~~il~~l~ 267 (600)
.-.++.|+|++|+|||||+..++-..... ..-..++|++....++...+ ..+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 34699999999999999998765321111 12245788887766655443 33555444
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.49 E-value=0.0069 Score=54.55 Aligned_cols=22 Identities=14% Similarity=0.382 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 112
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.47 E-value=0.0066 Score=54.27 Aligned_cols=20 Identities=40% Similarity=0.748 Sum_probs=18.6
Q ss_pred eEEEEEccCCChHHHHHHHH
Q 039283 212 SVVSIKGLGGVGKTTLAQLV 231 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v 231 (600)
.+|+|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999988
No 113
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.44 E-value=0.0073 Score=53.91 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.0
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|+|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999998875
No 114
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.42 E-value=0.012 Score=54.71 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+++|.+.+... .+...+++|+|+.|+|||||++.+...
T Consensus 8 ~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 8 CQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555432 235579999999999999999988764
No 115
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.36 E-value=0.009 Score=53.76 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999998875
No 116
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.31 E-value=0.0099 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+++|+|++|+|||||++.+..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999876
No 117
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.31 E-value=0.013 Score=59.72 Aligned_cols=50 Identities=28% Similarity=0.341 Sum_probs=35.9
Q ss_pred ccccccchHHHHHHHHhcC-------C--CCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 185 EVYGREKDKEAIVELLLRD-------D--LRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~-------~--~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++|.+..++.|...+... . .........+.|+|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3689998888888877210 0 001123457899999999999999999874
No 118
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.26 E-value=0.017 Score=56.56 Aligned_cols=40 Identities=23% Similarity=0.265 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhh
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+++++..++.... ......++.|.|++|+||||+|+.+..
T Consensus 16 ~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 16 LNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344444443321 334567899999999999999998875
No 119
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.22 E-value=0.036 Score=55.94 Aligned_cols=53 Identities=17% Similarity=-0.008 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCc-eEEEEeCCCC
Q 039283 195 AIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQI-KAWTCVSEDF 253 (600)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~~ 253 (600)
++++.+..- +.-..++|+|++|+|||||++.+.+.... ++-+. ++++-+++..
T Consensus 163 raID~~~pi-----~rGQr~~IvG~sG~GKTtLl~~Iar~i~~-~~~~v~~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPI-----GRGQRGLIVAPPKAGKTMLLQNIAQSIAY-NHPDCVLMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCC-----BTTCEEEEECCSSSSHHHHHHHHHHHHHH-HCTTSEEEEEEESSCH
T ss_pred eeeeeeeee-----cCCcEEEEecCCCCChhHHHHHHHHHHhh-cCCCeeEEEEEecCCh
Confidence 345555433 24468999999999999999988764322 22222 3456666543
No 120
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.21 E-value=0.06 Score=53.11 Aligned_cols=89 Identities=16% Similarity=0.123 Sum_probs=47.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH--HHHHHHHHHhhcCCC--CCcccHH-HHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF--TVSKSILNSIASDQC--TDKDDLN-LLQEKL 284 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~l~~il~~l~~~~~--~~~~~~~-~l~~~l 284 (600)
...+++|+|++|+||||++..++..... .-..+.++.. +.+... +-+...++.++.... ....+.. .....+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~--~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD--EGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH--TTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh--cCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 4579999999999999999888764332 2122344443 233322 223344444432211 0112222 223345
Q ss_pred HHHhCCCcEEEEEecCC
Q 039283 285 KKQLSGKKFLLVLDDVW 301 (600)
Q Consensus 285 ~~~L~~k~~LlVlDdv~ 301 (600)
...+....-++|+|-.-
T Consensus 180 ~~a~~~~~dvvIiDtpg 196 (306)
T 1vma_A 180 AHALARNKDVVIIDTAG 196 (306)
T ss_dssp HHHHHTTCSEEEEEECC
T ss_pred HHHHhcCCCEEEEECCC
Confidence 55455555688889763
No 121
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.21 E-value=0.01 Score=54.70 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+|+|+|++|+||||+++.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 122
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.18 E-value=0.01 Score=53.81 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.8
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+++|+|++|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 58999999999999999998763
No 123
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.12 E-value=0.056 Score=56.20 Aligned_cols=51 Identities=24% Similarity=0.217 Sum_probs=33.2
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC-HHHHHHHHH
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD-VFTVSKSIL 263 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~il 263 (600)
+.++|+|.+|+|||||++.+..+.... .-...+++.+++..+ ..+++.++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhh
Confidence 468999999999999999888753322 224456666666542 334444343
No 124
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.12 E-value=0.013 Score=53.95 Aligned_cols=26 Identities=38% Similarity=0.430 Sum_probs=22.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...+|+|+|++|+|||||++.+....
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999998643
No 125
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.09 E-value=0.097 Score=54.18 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=22.0
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+.+|.++|.+|+||||++..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4789999999999999999888754
No 126
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.08 E-value=0.01 Score=54.08 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=19.5
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+.|.|+||+|+|||||++.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999998875
No 127
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.07 E-value=0.0092 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|+|+|++|+|||||++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998876
No 128
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.05 E-value=0.013 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+|.|.|++|+||||+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 129
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.01 E-value=0.026 Score=59.41 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=20.9
Q ss_pred eEEEEEccCCChHHHHHHHHhhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
+.+.|.|.+|+|||+++..+....
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 389999999999999998887644
No 130
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.00 E-value=0.01 Score=59.85 Aligned_cols=45 Identities=22% Similarity=0.240 Sum_probs=32.6
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++|.+..++.+...+.... ..-+.|+|++|+|||+||+.+.+.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458999886665544443221 224899999999999999999874
No 131
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.99 E-value=0.012 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.528 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999876
No 132
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.93 E-value=0.052 Score=66.09 Aligned_cols=85 Identities=24% Similarity=0.146 Sum_probs=55.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l~ 285 (600)
..+.+.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++..... .....++..+.+.
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4579999999999999999888763 233334677888887776655 3444421110 2233455555555
Q ss_pred HHhC-CCcEEEEEecCC
Q 039283 286 KQLS-GKKFLLVLDDVW 301 (600)
Q Consensus 286 ~~L~-~k~~LlVlDdv~ 301 (600)
...+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 5543 577899999983
No 133
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.93 E-value=0.013 Score=53.26 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999874
No 134
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.93 E-value=0.014 Score=54.17 Aligned_cols=25 Identities=36% Similarity=0.458 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...+++|+|++|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999998763
No 135
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.93 E-value=0.11 Score=53.59 Aligned_cols=26 Identities=27% Similarity=0.166 Sum_probs=22.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...++.++|++|+||||++..+....
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998887643
No 136
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.91 E-value=0.018 Score=51.68 Aligned_cols=24 Identities=25% Similarity=0.470 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+++|+|++|+||||+++.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 137
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.88 E-value=0.013 Score=54.12 Aligned_cols=24 Identities=17% Similarity=0.461 Sum_probs=21.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+|+|.|++|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999988763
No 138
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.86 E-value=0.014 Score=53.69 Aligned_cols=24 Identities=38% Similarity=0.458 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+++|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 139
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.85 E-value=0.023 Score=54.55 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhh
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+.+...+..... ......++.|+|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 15 LARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444444443322 334567899999999999999998875
No 140
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.79 E-value=0.016 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||++.+..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHh
Confidence 5899999999999999998875
No 141
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.74 E-value=0.015 Score=52.81 Aligned_cols=23 Identities=43% Similarity=0.637 Sum_probs=20.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+|.|.|++|+||||+++.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999998863
No 142
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.73 E-value=0.14 Score=51.17 Aligned_cols=52 Identities=17% Similarity=0.053 Sum_probs=36.9
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSI 266 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l 266 (600)
-.++.|.|.+|+||||||..++.+... .-..++|++. ..+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 368999999999999999888765432 2234566665 345677777776554
No 143
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.71 E-value=0.017 Score=53.55 Aligned_cols=25 Identities=40% Similarity=0.405 Sum_probs=21.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...+++|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999988763
No 144
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=94.70 E-value=0.014 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=20.9
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++|.|+|++|+||||+++.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 457899999999999999988753
No 145
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.69 E-value=0.021 Score=52.58 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=21.8
Q ss_pred CCceEEEEEccCCChHHHHHHHHhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
....+|+|.|++|+||||+++.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998875
No 146
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.68 E-value=0.017 Score=51.74 Aligned_cols=22 Identities=36% Similarity=0.487 Sum_probs=19.4
Q ss_pred ceEEEEEccCCChHHHHHHHHh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVN 232 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~ 232 (600)
..+++|+|+.|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999654
No 147
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.66 E-value=0.014 Score=53.89 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+++|+|++|+|||||++.+...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998763
No 148
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.65 E-value=0.018 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+++|+|++|+|||||++.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~ 28 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFE 28 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998875
No 149
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.65 E-value=0.019 Score=52.68 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.2
Q ss_pred CCceEEEEEccCCChHHHHHHHHhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+...+|+|+|+.|+||||+++.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999998875
No 150
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.62 E-value=0.019 Score=52.06 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
....|+|+|++|+||||+++.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998875
No 151
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.61 E-value=0.019 Score=52.27 Aligned_cols=23 Identities=30% Similarity=0.237 Sum_probs=20.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+|+|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998875
No 152
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.60 E-value=0.022 Score=57.52 Aligned_cols=109 Identities=15% Similarity=0.162 Sum_probs=59.8
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH--HHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF--TVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~--~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
.+++|+|+.|+|||||.+.+...... .....+ +.+.++.... .. ..++.+.. ..... ......+...|.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~--~~~~~i-~t~ed~~e~~~~~~-~~~v~q~~--~~~~~---~~~~~~La~aL~ 194 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNN--TKYHHI-LTIEDPIEFVHESK-KCLVNQRE--VHRDT---LGFSEALRSALR 194 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHH--HCCCEE-EEEESSCCSCCCCS-SSEEEEEE--BTTTB---SCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccC--CCCcEE-EEccCcHHhhhhcc-ccceeeee--ecccc---CCHHHHHHHHhh
Confidence 59999999999999999988763221 111222 2222221110 00 00000000 00011 223447888888
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHHH
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGVA 334 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v~ 334 (600)
..+=+|++|.+. +.+.+..+.... ..|..||+|+......
T Consensus 195 ~~PdvillDEp~--d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 195 EDPDIILVGEMR--DLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp SCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hCcCEEecCCCC--CHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 899999999995 445555544332 2356688888776544
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.59 E-value=0.019 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++.|.|++|+||||||+.+...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 47899999999999999998763
No 154
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.57 E-value=0.022 Score=53.18 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...++|.|.|++|+||||.|+.+...
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999988763
No 155
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.56 E-value=0.02 Score=52.15 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.9
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|++|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999864
No 156
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.55 E-value=0.019 Score=52.35 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+|+|.|++|+||||+|+.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998875
No 157
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.54 E-value=0.015 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999998763
No 158
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.53 E-value=0.022 Score=52.74 Aligned_cols=24 Identities=38% Similarity=0.511 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+|+|+|++|+|||||++.+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 159
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.51 E-value=0.019 Score=51.09 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998876
No 160
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.50 E-value=0.019 Score=51.84 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=20.2
Q ss_pred EEEEEccCCChHHHHHHHHhhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
.++|+|+.|+|||||++.+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999887643
No 161
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.47 E-value=0.036 Score=55.49 Aligned_cols=44 Identities=25% Similarity=0.257 Sum_probs=30.3
Q ss_pred ccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 189 REKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 189 R~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-+.-.+++.+.+...- ..+....+.|+|++|+||||+++.++..
T Consensus 4 ~~~L~~~il~~l~~~i--~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 4 THKLADDVLQLLDNRI--EDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHHHHHHHHTT--TTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--ccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3444555655553221 2345677999999999999999988763
No 162
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.46 E-value=0.024 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+|+|+|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999998876
No 163
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.42 E-value=0.022 Score=54.88 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999998763
No 164
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.42 E-value=0.02 Score=52.59 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.|+|.|++|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999998763
No 165
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=94.41 E-value=0.017 Score=51.89 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.|.|.|++|+||||+|+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999876
No 166
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.39 E-value=0.022 Score=52.19 Aligned_cols=24 Identities=21% Similarity=0.447 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..++++|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 346899999999999999998875
No 167
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.38 E-value=0.07 Score=59.57 Aligned_cols=99 Identities=19% Similarity=0.159 Sum_probs=58.3
Q ss_pred CCCccccccchHHHHHHHHhcCCC-------CCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC
Q 039283 182 NEDEVYGREKDKEAIVELLLRDDL-------RADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD 254 (600)
Q Consensus 182 ~~~~~vGR~~e~~~l~~~L~~~~~-------~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 254 (600)
.-..+.|-+..+++|.+.+.-+-. .+-...+-+.++|++|+|||.||+.+++.. .. -++.++
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~-----~f~~v~---- 543 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QA-----NFISIK---- 543 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TC-----EEEECC----
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CC-----ceEEec----
Confidence 334567888878877776543210 012334568899999999999999998732 21 223332
Q ss_pred HHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCC
Q 039283 255 VFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVW 301 (600)
Q Consensus 255 ~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~ 301 (600)
. .+++... .......+.+.+...-+..+++|+||+++
T Consensus 544 ~----~~l~s~~------vGese~~vr~lF~~Ar~~~P~IifiDEiD 580 (806)
T 3cf2_A 544 G----PELLTMW------FGESEANVREIFDKARQAAPCVLFFDELD 580 (806)
T ss_dssp H----HHHHTTT------CSSCHHHHHHHHHHHHTTCSEEEECSCGG
T ss_pred c----chhhccc------cchHHHHHHHHHHHHHHcCCceeechhhh
Confidence 1 1222221 12233334444444445689999999995
No 168
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.37 E-value=0.024 Score=52.40 Aligned_cols=23 Identities=26% Similarity=0.549 Sum_probs=21.0
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+|+|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 169
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.36 E-value=0.033 Score=51.05 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+..|..++... +....+.|+|++|+|||++|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 55666666432 23457999999999999999888764
No 170
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.35 E-value=0.18 Score=52.26 Aligned_cols=27 Identities=37% Similarity=0.326 Sum_probs=22.8
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...++|.|+|.+|+||||++..+....
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l 124 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFL 124 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999998887644
No 171
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.35 E-value=0.028 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.9
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+|+|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 172
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.34 E-value=0.079 Score=50.03 Aligned_cols=102 Identities=20% Similarity=0.254 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhh-hhhccC-CceEEEEeCCCCCHHHHHHHHHHHhhcCC
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDD-RVQRHF-QIKAWTCVSEDFDVFTVSKSILNSIASDQ 270 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~-~~~~~F-~~~~wv~vs~~~~~~~~l~~il~~l~~~~ 270 (600)
.+++...+..+ +.+.|.|+.|+||||+.....-+. ...... ...+.+..........+...+...++...
T Consensus 66 q~~~i~~i~~g--------~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 66 ESEILEAISQN--------SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp HHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred HHHHHHHHhcC--------CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 44455555433 489999999999998765544322 111222 12333333322223334444444333211
Q ss_pred CC-------------------CcccHHHHHHHHHHHhCCCcEEEEEecCCCC
Q 039283 271 CT-------------------DKDDLNLLQEKLKKQLSGKKFLLVLDDVWNE 303 (600)
Q Consensus 271 ~~-------------------~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~ 303 (600)
.. .......+...+...+.+ --+||+|.++..
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~-~~~lVlDEah~~ 188 (235)
T 3llm_A 138 GKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRG-ISHVIVDEIHER 188 (235)
T ss_dssp TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTT-CCEEEECCTTSC
T ss_pred CceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcC-CcEEEEECCccC
Confidence 00 012445666666554433 347899999763
No 173
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.33 E-value=0.024 Score=51.27 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..|+|.|++|+||||+++.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999875
No 174
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.32 E-value=0.029 Score=50.81 Aligned_cols=26 Identities=38% Similarity=0.318 Sum_probs=22.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...+|.|.|++|+||||+++.+....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999988743
No 175
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.31 E-value=0.028 Score=50.15 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+++.|+|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999998874
No 176
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.29 E-value=0.018 Score=53.02 Aligned_cols=22 Identities=32% Similarity=0.469 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+.++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999998875
No 177
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.29 E-value=0.022 Score=53.42 Aligned_cols=22 Identities=36% Similarity=0.649 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|+|+|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999998875
No 178
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.27 E-value=0.017 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998876
No 179
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.24 E-value=0.023 Score=52.00 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|+|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 180
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.24 E-value=0.018 Score=52.00 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=16.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999998875
No 181
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.24 E-value=0.023 Score=52.40 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.7
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3789999999999999998865
No 182
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.20 E-value=0.024 Score=54.05 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.9
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+++|+|++|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999885
No 183
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.19 E-value=0.02 Score=51.09 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.9
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998876
No 184
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.17 E-value=0.026 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999876
No 185
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.16 E-value=0.026 Score=52.07 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=19.8
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 186
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.14 E-value=0.26 Score=49.06 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...+++|+|+.|+|||||++.+....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999887643
No 187
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.12 E-value=0.028 Score=53.81 Aligned_cols=25 Identities=12% Similarity=0.228 Sum_probs=21.7
Q ss_pred CCceEEEEEccCCChHHHHHHHHhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
....+|+|.|++|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999998876
No 188
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.09 E-value=0.077 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.|+|.|+.|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 189
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.08 E-value=0.028 Score=52.11 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+|+|.|++|+||||+++.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 190
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.02 E-value=0.04 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.135 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
....|+|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 191
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.02 E-value=0.028 Score=49.84 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.3
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998876
No 192
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.01 E-value=0.028 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+|+|.|++|+||||+++.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999864
No 193
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.00 E-value=0.22 Score=52.96 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=37.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSI 266 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l 266 (600)
.-.++.|.|.+|+||||||.+++.+.... +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 34689999999999999998887643222 123567777644 4667777666544
No 194
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.97 E-value=0.028 Score=51.07 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+|+|.|++|+||||+++.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999763
No 195
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=93.97 E-value=0.032 Score=55.36 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....+++|.|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 35579999999999999999988763
No 196
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.95 E-value=0.034 Score=53.01 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+|+|.|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998876
No 197
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.95 E-value=0.03 Score=51.82 Aligned_cols=22 Identities=32% Similarity=0.548 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||++.+..
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998875
No 198
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.94 E-value=0.19 Score=54.31 Aligned_cols=103 Identities=15% Similarity=0.149 Sum_probs=54.9
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHH-HHhC-
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLK-KQLS- 289 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~-~~L~- 289 (600)
+++.|+|++|+||||++..+....... ...+.+..... .....+.+.++. .......+..... .+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~----~Aa~~L~e~~~~----~a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTG----KAARRLGEVTGR----TASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSH----HHHHHHHHHHTS----CEEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcH----HHHHHhHhhhcc----cHHHHHHHHcCCcchhhhh
Confidence 589999999999999998887643222 12344443322 112222222221 1222222110000 0000
Q ss_pred ----CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEec
Q 039283 290 ----GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTH 328 (600)
Q Consensus 290 ----~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt 328 (600)
.+.-+||+|.+...+...+..+...++ .+.++|+.-
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvG 313 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVG 313 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEE
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEe
Confidence 022489999997776677777777665 456676654
No 199
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.92 E-value=0.035 Score=49.94 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+|+|+|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999988763
No 200
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.91 E-value=0.12 Score=47.49 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
.|+|-|..|+||||.++.+.+..
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999998744
No 201
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.85 E-value=0.034 Score=54.88 Aligned_cols=25 Identities=36% Similarity=0.413 Sum_probs=21.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...+++|+|++|+|||||++.+..-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4569999999999999999988764
No 202
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.84 E-value=0.3 Score=50.91 Aligned_cols=54 Identities=13% Similarity=0.052 Sum_probs=37.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSI 266 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l 266 (600)
.-.++.|.|.+|+|||+||..++.+.... .-..++|++.. .+..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 34689999999999999998887653322 12346777664 34667777666543
No 203
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.84 E-value=0.027 Score=52.73 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||++.+..
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5899999999999999998876
No 204
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.81 E-value=0.033 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=21.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-.+++|+|+.|+|||||.+.+...
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 369999999999999999998763
No 205
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.81 E-value=0.036 Score=51.86 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=28.2
Q ss_pred cchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 190 EKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 190 ~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
++..+.+...+.. .....|+|+|.+|+|||||+..+...
T Consensus 23 ~~~a~~~r~~~~~------~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 23 KRLADKNRKLLNK------HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp HHHHHHHHHHHHH------TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh------CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3344555555432 24678999999999999999888764
No 206
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.80 E-value=0.2 Score=51.64 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=21.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
..++.|+|++|+||||++..+....
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999998887643
No 207
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.79 E-value=0.031 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...|+|.|++|+||||+|+.+..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 208
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.79 E-value=0.036 Score=50.91 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..|+|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999988763
No 209
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.74 E-value=0.26 Score=48.33 Aligned_cols=25 Identities=32% Similarity=0.239 Sum_probs=21.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
..+++|+|.+|+||||++..++...
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999998887643
No 210
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=93.74 E-value=0.035 Score=51.66 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=18.9
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 211
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=93.73 E-value=0.17 Score=52.27 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=22.5
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35679999999999999999998763
No 212
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.73 E-value=0.041 Score=48.53 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=21.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-.+++|.|+.|.|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 369999999999999999998763
No 213
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.70 E-value=0.13 Score=62.64 Aligned_cols=86 Identities=23% Similarity=0.146 Sum_probs=57.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l~ 285 (600)
.-.++.|+|++|+||||||.++..... ..-..++|++....++... ++.++..... ...+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a--~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHH--TTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--hcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 456999999999999999998876432 2234678888877776532 4555543211 3345666666666
Q ss_pred HHh-CCCcEEEEEecCCC
Q 039283 286 KQL-SGKKFLLVLDDVWN 302 (600)
Q Consensus 286 ~~L-~~k~~LlVlDdv~~ 302 (600)
... +.+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 544 34567999999843
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.68 E-value=0.55 Score=49.51 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=21.7
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...++|+|+|.+|+||||++..+....
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l 125 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYY 125 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 457799999999999999998887643
No 215
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.66 E-value=0.069 Score=52.84 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCceEEEEEccCCChHHHHHHHHhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
....+++|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457999999999999999998875
No 216
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.65 E-value=0.039 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+|+|+|+.|+||||+++.+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998875
No 217
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.60 E-value=0.12 Score=62.22 Aligned_cols=86 Identities=23% Similarity=0.151 Sum_probs=57.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l~ 285 (600)
.-+++.|.|++|+||||||.++..... ..-..++|++....++.. .++.++..... ...+.+++.+.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLq~a~~~~--~~G~~vlyis~E~s~~~~-----~a~~lGvd~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQ--REGKTCAFIDAEHALDPI-----YARKLGVDIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEECTTSCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH--HhCCCeEEEEccCchHHH-----HHHHcCCCHHHeEEcCCCCHHHHHHHHH
Confidence 456999999999999999988876432 233468899888777653 24455432111 2345566666665
Q ss_pred HHh-CCCcEEEEEecCCC
Q 039283 286 KQL-SGKKFLLVLDDVWN 302 (600)
Q Consensus 286 ~~L-~~k~~LlVlDdv~~ 302 (600)
... +.+.-+||+|.+..
T Consensus 455 ~lv~~~~~~lVVIDSL~a 472 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAA 472 (1706)
T ss_dssp HHHHHTCCSEEEESCSTT
T ss_pred HHHHhcCCCEEEECCHHH
Confidence 544 34567999999854
No 218
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.60 E-value=0.045 Score=55.16 Aligned_cols=52 Identities=15% Similarity=0.084 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCc-eEEEEeCCC
Q 039283 195 AIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQI-KAWTCVSED 252 (600)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~-~~wv~vs~~ 252 (600)
++++.|..- +.-+-++|.|.+|+|||+|+..+.+.... ++-+. ++++-+++.
T Consensus 164 raID~l~Pi-----grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~-~~~dv~~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPI-----GKGQRGMIVAPPKAGKTTILKEIANGIAE-NHPDTIRIILLIDER 216 (427)
T ss_dssp HHHHHHSCC-----BTTCEEEEEECTTCCHHHHHHHHHHHHHH-HCTTSEEEEEECSCC
T ss_pred hhhhhcccc-----cCCceEEEecCCCCChhHHHHHHHHHHhh-cCCCeEEEEEEeccC
Confidence 566766543 24468899999999999999988874322 12232 245555544
No 219
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.57 E-value=0.033 Score=52.16 Aligned_cols=24 Identities=29% Similarity=0.309 Sum_probs=21.0
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...|.|.|++|+||||+++.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 220
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.56 E-value=0.021 Score=52.93 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+|+|.|+.|+||||+++.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 221
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.55 E-value=0.042 Score=53.59 Aligned_cols=24 Identities=33% Similarity=0.711 Sum_probs=21.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVN 232 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~ 232 (600)
+...+|+|+|++|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999886
No 222
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.54 E-value=0.038 Score=51.39 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998865
No 223
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.53 E-value=0.04 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+|+|.|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999875
No 224
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=93.53 E-value=0.044 Score=50.82 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
..+|.|.|++|+||||+++.+....
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999987643
No 225
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.51 E-value=0.059 Score=48.79 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.....|+|+|.+|+|||||...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999888763
No 226
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=93.42 E-value=0.063 Score=55.66 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=35.9
Q ss_pred CccccccchHHHHHHHHhcC--------CCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 184 DEVYGREKDKEAIVELLLRD--------DLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~--------~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++|.+..++.|...+... ........+-+.++|++|+|||++|+.+...
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45789888888887666321 0001123456899999999999999999863
No 227
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.41 E-value=0.049 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998853
No 228
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=93.31 E-value=0.052 Score=59.21 Aligned_cols=43 Identities=30% Similarity=0.356 Sum_probs=35.7
Q ss_pred CccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 184 DEVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 184 ~~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++|.+.-++.+...+... ..+.|+|++|+||||||+.+...
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 45899998888888877543 47899999999999999999863
No 229
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.25 E-value=0.46 Score=49.29 Aligned_cols=65 Identities=22% Similarity=0.205 Sum_probs=42.8
Q ss_pred HHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC-HHHHHHHHHHH
Q 039283 195 AIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD-VFTVSKSILNS 265 (600)
Q Consensus 195 ~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~il~~ 265 (600)
+.++.|..- .+-+-++|.|.+|+|||+|+..+.++.. +.+-+.++++-+++... ..+++.++...
T Consensus 142 r~ID~l~pi-----gkGQr~~Ifgg~G~GKT~L~~~i~~~~~-~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-----AKGGKIGLFGGAGVGKTVLIMELINNVA-KAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-----ETTCEEEEEECTTSSHHHHHHHHHHHTT-TTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-----ccCCeeeeecCCCCChHHHHHHHHHhhH-hhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 356666433 2446889999999999999998877431 22345567777776643 45555555543
No 230
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.22 E-value=0.043 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-.+++|.|++|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36999999999999999998874
No 231
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.22 E-value=0.28 Score=48.11 Aligned_cols=89 Identities=13% Similarity=0.049 Sum_probs=45.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC-CCHHHHHHHHHHHhhcCCC--CCcccHHHHHHHHHHH
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED-FDVFTVSKSILNSIASDQC--TDKDDLNLLQEKLKKQ 287 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~-~~~~~~l~~il~~l~~~~~--~~~~~~~~l~~~l~~~ 287 (600)
..+++|+|.+|+||||++..+...... .-..+.++..... ....+.+.......+.... ....+...+.....+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~--~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~ 175 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKK--KGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEK 175 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHH--TTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHH
Confidence 578999999999999999888764332 2223445544321 1222333444444333211 0122333333333333
Q ss_pred hC-CCcEEEEEecCC
Q 039283 288 LS-GKKFLLVLDDVW 301 (600)
Q Consensus 288 L~-~k~~LlVlDdv~ 301 (600)
++ ..-=++|+|-.-
T Consensus 176 ~~~~~~D~ViIDTpg 190 (297)
T 1j8m_F 176 FLSEKMEIIIVDTAG 190 (297)
T ss_dssp HHHTTCSEEEEECCC
T ss_pred HHhCCCCEEEEeCCC
Confidence 33 333378888763
No 232
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.20 E-value=0.032 Score=50.00 Aligned_cols=25 Identities=36% Similarity=0.316 Sum_probs=21.6
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDR 236 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~ 236 (600)
++++|+|..|+|||||++.+..-..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 5899999999999999998876443
No 233
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.19 E-value=0.044 Score=51.07 Aligned_cols=41 Identities=29% Similarity=0.255 Sum_probs=29.7
Q ss_pred cccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 188 GREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 188 GR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+.++..+.+...+.. ....+++|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 334455555555532 24679999999999999999888764
No 234
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.19 E-value=0.34 Score=50.68 Aligned_cols=52 Identities=13% Similarity=0.095 Sum_probs=35.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
.-.++.|.|.+|+|||||+..+..+.... .-..++|++... +...+...++.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~~ 253 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRMLC 253 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHHH
Confidence 34699999999999999999888754322 122566776543 45566665543
No 235
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.15 E-value=0.34 Score=61.14 Aligned_cols=161 Identities=13% Similarity=0.045 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHh------
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSI------ 266 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l------ 266 (600)
...+.+.+.... +-+.++|++|+|||+||+.+.... .-...+.++.+...+...+...+-..+
T Consensus 1256 ~~~ll~~~l~~~-------~~vLL~GPpGtGKT~la~~~l~~~----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~ 1324 (2695)
T 4akg_A 1256 HEKIFYDLLNSK-------RGIILCGPPGSGKTMIMNNALRNS----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTS 1324 (2695)
T ss_dssp HHHHHHHHHHHT-------CEEEEECSTTSSHHHHHHHHHHSC----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEET
T ss_pred HHHHHHHHHHCC-------CeEEEECCCCCCHHHHHHHHHhcC----CCCceEEEEeecCCCHHHHHHHHHHHhhhcccc
Q ss_pred -----hcCCCCCcccHHHHHHHHHHHhCCCcEEEEEecCCCCChh------hHHhhcCCCCCCC------------CCcE
Q 039283 267 -----ASDQCTDKDDLNLLQEKLKKQLSGKKFLLVLDDVWNENYN------SWRALSCPFGAGA------------SGSK 323 (600)
Q Consensus 267 -----~~~~~~~~~~~~~l~~~l~~~L~~k~~LlVlDdv~~~~~~------~~~~l~~~l~~~~------------~gs~ 323 (600)
++... +++++|.+||+.-...+ ..+.+...+..++ .+..
T Consensus 1325 ~g~~~~P~~~------------------gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~ 1386 (2695)
T 4akg_A 1325 KGLTLLPKSD------------------IKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIH 1386 (2695)
T ss_dssp TTEEEEEBSS------------------SSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEE
T ss_pred CCccccCCCC------------------CceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEE
Q ss_pred EEEeccChH-------HHhhcCccceeecCCCCHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHhh
Q 039283 324 IVVTHRNQG-------VAETMRAVSTKTLKELSDDDCLRVLIQHSLGARDFNIPQSLKEVAEKIVKKC 384 (600)
Q Consensus 324 IlvTtR~~~-------v~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~l~~~~~~I~~~~ 384 (600)
+|.++-... -.........+.+...+.++-..+|.....+.- ...++...++..|++.+
T Consensus 1387 lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l--~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1387 IVGACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIF--KLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp EEEEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHT--TSSGGGGGGHHHHHHHH
T ss_pred EEEecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHHH
No 236
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.13 E-value=0.048 Score=51.77 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 6999999999999999998875
No 237
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.12 E-value=0.32 Score=50.61 Aligned_cols=52 Identities=15% Similarity=0.052 Sum_probs=34.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNS 265 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~ 265 (600)
.-.++.|.|.+|+||||||..++.+.... -..++|++... +..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 34689999999999999998887754332 23456665543 444555555543
No 238
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=93.09 E-value=0.032 Score=52.65 Aligned_cols=21 Identities=29% Similarity=0.434 Sum_probs=15.7
Q ss_pred eEEEEEccCCChHHHHHHHHh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVN 232 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~ 232 (600)
.+++|+|+.|+|||||++.+.
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999887
No 239
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.08 E-value=0.27 Score=45.58 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...|.|.|+.|+||||+++.+....
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998743
No 240
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.05 E-value=0.054 Score=53.72 Aligned_cols=40 Identities=20% Similarity=0.179 Sum_probs=27.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeC
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVS 250 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 250 (600)
++.++|+|+|-|||||||.+-.+.... ...-..+.-|++.
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aL--A~~GkkVllID~D 85 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCD 85 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEES
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHH--HHCCCeEEEEecC
Confidence 467899999999999999986665432 2222345556655
No 241
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.01 E-value=0.043 Score=50.05 Aligned_cols=23 Identities=39% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHhhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
+++|+|+.|+|||||++.+....
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 68999999999999999887654
No 242
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.97 E-value=0.056 Score=50.03 Aligned_cols=73 Identities=12% Similarity=0.140 Sum_probs=42.1
Q ss_pred EEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHH----------hhcCCCCCcccHHHHHH
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNS----------IASDQCTDKDDLNLLQE 282 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~----------l~~~~~~~~~~~~~l~~ 282 (600)
+|.|.|++|+||||.|+.+.... . ...++ ..+++++-+.. ..... ...+.+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~------g-~~~is------tGdllR~~i~~~t~lg~~~~~~~~~G--~lvpd~iv~~ 66 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK------G-FVHIS------TGDILREAVQKGTPLGKKAKEYMERG--ELVPDDLIIA 66 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH------C-CEEEE------HHHHHHHHHHHTCHHHHHHHHHHHHT--CCCCHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH------C-CeEEc------HHHHHHHHHHhcChhhhhHHHHHhcC--CcCCHHHHHH
Confidence 57899999999999999887632 1 12233 23444432221 10111 2233345566
Q ss_pred HHHHHhCCCcEEEEEecCC
Q 039283 283 KLKKQLSGKKFLLVLDDVW 301 (600)
Q Consensus 283 ~l~~~L~~k~~LlVlDdv~ 301 (600)
.+.+.+..... +|||.+-
T Consensus 67 lv~~~l~~~~~-~ilDGfP 84 (206)
T 3sr0_A 67 LIEEVFPKHGN-VIFDGFP 84 (206)
T ss_dssp HHHHHCCSSSC-EEEESCC
T ss_pred HHHHhhccCCc-eEecCCc
Confidence 67777765444 6789984
No 243
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.97 E-value=0.054 Score=51.28 Aligned_cols=22 Identities=36% Similarity=0.582 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999998874
No 244
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.94 E-value=0.36 Score=50.55 Aligned_cols=43 Identities=21% Similarity=0.235 Sum_probs=30.2
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD 254 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~ 254 (600)
....+++|+|+.|+|||||++.+...... ....+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~---~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh---cCCeEEEecCcccc
Confidence 34679999999999999999998764322 23456655444444
No 245
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.94 E-value=0.045 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..|.|.|++|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999988763
No 246
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.93 E-value=0.056 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++++|+|+.|+|||||+..+...
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 578999999999999999988864
No 247
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.90 E-value=0.34 Score=50.50 Aligned_cols=63 Identities=21% Similarity=0.163 Sum_probs=43.2
Q ss_pred HHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCC-HHHHHHHHHH
Q 039283 196 IVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFD-VFTVSKSILN 264 (600)
Q Consensus 196 l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~-~~~~l~~il~ 264 (600)
.++.|..- .+-+-++|.|.+|+|||+|+..+.++.. +.+-+.++++-+++... ..+++.++..
T Consensus 155 vID~l~pi-----gkGqr~gIfgg~GvGKT~L~~~l~~~~a-~~~~~v~V~~~iGER~rEv~e~~~~~~~ 218 (498)
T 1fx0_B 155 VVNLLAPY-----RRGGKIGLFGGAGVGKTVLIMELINNIA-KAHGGVSVFGGVGERTREGNDLYMEMKE 218 (498)
T ss_dssp THHHHSCC-----CTTCCEEEEECSSSSHHHHHHHHHHHTT-TTCSSCEEEEEESCCSHHHHHHHHHHHH
T ss_pred Eeeeeccc-----ccCCeEEeecCCCCCchHHHHHHHHHHH-hhCCCEEEEEEcccCcHHHHHHHHhhhc
Confidence 55666443 2445789999999999999998887421 23446778888887664 4555556554
No 248
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.90 E-value=0.049 Score=51.15 Aligned_cols=22 Identities=41% Similarity=0.561 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998875
No 249
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.88 E-value=0.059 Score=53.10 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=22.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...+++|+|+.|+|||||++.+....
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34799999999999999999887643
No 250
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.87 E-value=0.034 Score=54.53 Aligned_cols=24 Identities=21% Similarity=0.531 Sum_probs=18.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999998876
No 251
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.85 E-value=0.056 Score=49.74 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+|+|.|+.|+||||+++.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999998875
No 252
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=92.79 E-value=0.099 Score=49.40 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=27.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE 251 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 251 (600)
-.++.|.|++|+|||||+..++.... ..-..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 35899999999999999987765322 2223567776544
No 253
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.75 E-value=0.058 Score=50.57 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999998876
No 254
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.73 E-value=0.047 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..|+|+|++|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999876
No 255
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.69 E-value=0.048 Score=50.54 Aligned_cols=23 Identities=35% Similarity=0.303 Sum_probs=20.6
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+++|+|+.|+|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999988754
No 256
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=92.68 E-value=0.2 Score=60.35 Aligned_cols=84 Identities=24% Similarity=0.161 Sum_probs=60.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC----CcccHHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT----DKDDLNLLQEKLK 285 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~----~~~~~~~l~~~l~ 285 (600)
.-++|-|+|+.|+||||||.++.. ..+..=...+|++..+..++.- ++.++..... .+..-++....+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a--~~~~~g~~~~~i~~e~~~~~~~-----~~~~Gv~~~~l~~~~p~~~e~~l~~~~ 1502 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1502 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHhcCCeEEEEecCCCCCHHH-----HHHcCCCHHHeEEeCCCcHHHHHHHHH
Confidence 457999999999999999988876 3455566788999888877653 6666654322 3444466666666
Q ss_pred HHhC-CCcEEEEEecC
Q 039283 286 KQLS-GKKFLLVLDDV 300 (600)
Q Consensus 286 ~~L~-~k~~LlVlDdv 300 (600)
..++ +..-+||+|-|
T Consensus 1503 ~~~~s~~~~~vvvDsv 1518 (1706)
T 3cmw_A 1503 ALARSGAVDVIVVDSV 1518 (1706)
T ss_dssp HHHHHTCCSEEEESCS
T ss_pred HHHHcCCCCEEEEccH
Confidence 6665 46669999998
No 257
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=92.68 E-value=0.061 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+|+|.|++|+||||+++.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998875
No 258
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=92.68 E-value=0.059 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.310 Sum_probs=19.0
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.|+|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999998876
No 259
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=92.67 E-value=0.062 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|+|.|+.|+||||||..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999998876
No 260
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.67 E-value=0.063 Score=50.89 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||++.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLA 53 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 261
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=92.66 E-value=0.067 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.0
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...|.|.|++|+||||+|+.+...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998763
No 262
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.66 E-value=0.068 Score=52.48 Aligned_cols=23 Identities=35% Similarity=0.437 Sum_probs=20.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.++|+|.|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999988875
No 263
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.65 E-value=0.1 Score=52.68 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...+.+.+... .+...+|+|+|.+|+|||||+..+...
T Consensus 65 ~~~~~~~~~~~----~~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPD----SGNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGG----CCCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhh----cCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 44555555432 246789999999999999999888754
No 264
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.65 E-value=0.071 Score=52.98 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..++|+|+|+.|+||||||..+..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999988876
No 265
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.58 E-value=0.078 Score=51.96 Aligned_cols=24 Identities=29% Similarity=0.228 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..++++|.|+.|+||||||..+..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999988875
No 266
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.51 E-value=0.067 Score=52.96 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|.|+|+.|+||||||..+..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 267
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.49 E-value=0.061 Score=52.18 Aligned_cols=22 Identities=50% Similarity=0.564 Sum_probs=20.0
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||++.+..
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999998864
No 268
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=92.48 E-value=0.069 Score=52.50 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998875
No 269
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.48 E-value=0.068 Score=51.52 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998875
No 270
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.47 E-value=0.14 Score=48.07 Aligned_cols=26 Identities=27% Similarity=0.294 Sum_probs=22.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
....|+|.|++|+||||+++.+....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998744
No 271
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=92.38 E-value=0.13 Score=49.21 Aligned_cols=36 Identities=14% Similarity=0.182 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhh
Q 039283 194 EAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 194 ~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..+..||.... +....+.|+|++|+|||.+|..+.+
T Consensus 91 ~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 91 SVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHh
Confidence 34666664321 3346799999999999999998876
No 272
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=92.37 E-value=0.25 Score=46.18 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=23.6
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDR 236 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~ 236 (600)
.....|.|.|+.|+||||+++.+.+...
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3457899999999999999999987543
No 273
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.37 E-value=0.066 Score=50.87 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998875
No 274
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.36 E-value=0.061 Score=48.45 Aligned_cols=21 Identities=48% Similarity=0.487 Sum_probs=19.2
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-|+|+|.+|+|||||.+.+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998876
No 275
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.35 E-value=0.079 Score=50.42 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-.+++|+|+.|+|||||.+.+..
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998865
No 276
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.33 E-value=0.26 Score=48.21 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=32.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHH
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILN 264 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~ 264 (600)
-.+++|.|++|+|||||+..+........ -..++|++... +..++...+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~-G~~v~~~~~e~--~~~~~~~r~~~ 85 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAM-GKKVGLAMLEE--SVEETAEDLIG 85 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTS-CCCEEEEESSS--CHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHc-CCeEEEEeCcC--CHHHHHHHHHH
Confidence 35999999999999999998876433221 11355665432 34444444443
No 277
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.30 E-value=0.067 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998875
No 278
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.29 E-value=0.071 Score=48.42 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.-.++|+|++|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999988763
No 279
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=92.27 E-value=0.068 Score=50.37 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~G 56 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMG 56 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 280
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=92.24 E-value=0.068 Score=51.61 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||++.+..
T Consensus 38 e~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5899999999999999998875
No 281
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.24 E-value=0.059 Score=50.19 Aligned_cols=22 Identities=41% Similarity=0.705 Sum_probs=20.0
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999998865
No 282
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.23 E-value=0.076 Score=51.16 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-.+++|+|+.|+|||||.+.+..
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 35899999999999999998875
No 283
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.23 E-value=0.072 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998876
No 284
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=92.21 E-value=0.07 Score=50.90 Aligned_cols=22 Identities=41% Similarity=0.761 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998875
No 285
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.20 E-value=0.087 Score=50.70 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=55.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC-CCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE-DFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~-~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
-.+++|+|+.|+|||||++.+...... .+...+++.-.. .+-.... ..++.+ ........ .+...+...|.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~--~~~G~I~~~g~~i~~~~~~~-~~~v~q--~~~gl~~~---~l~~~la~aL~ 96 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIEDPIEYVFKHK-KSIVNQ--REVGEDTK---SFADALRAALR 96 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHH--HCCCEEEEEESSCCSCCCCS-SSEEEE--EEBTTTBS---CHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCC--CCCCEEEEcCCcceeecCCc-ceeeeH--HHhCCCHH---HHHHHHHHHHh
Confidence 369999999999999999988763221 123344332110 0000000 000000 00000111 22445566665
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChHH
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQGV 333 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~v 333 (600)
.++=+|++|..- +......+.... ..|..|++||.....
T Consensus 97 ~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 97 EDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred hCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 567788999985 334433333221 235668888876543
No 286
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.17 E-value=0.082 Score=53.32 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=22.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...+++|+|+.|+|||||++.+....
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45799999999999999999887643
No 287
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=92.13 E-value=0.086 Score=46.47 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=19.9
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..|+|+|.+|+|||||...+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998875
No 288
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.09 E-value=0.58 Score=44.07 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=53.9
Q ss_pred EEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhc---C-CC-----------CCcccHH
Q 039283 214 VSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIAS---D-QC-----------TDKDDLN 278 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~---~-~~-----------~~~~~~~ 278 (600)
+.|+|+.|.|||.+|..+.... -..++++. . ...+..++.+.+.. . .. ......+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~-P----~~~L~~q~~~~~~~~~~~~v~~~~g~~~~~~~i~v~T~~ 180 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL-----STPTLIVV-P----TLALAEQWKERLGIFGEEYVGEFSGRIKELKPLTVSTYD 180 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS-----CSCEEEEE-S----SHHHHHHHHHHHGGGCGGGEEEESSSCBCCCSEEEEEHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEe-C----CHHHHHHHHHHHHhCCCCeEEEEeCCCCCcCCEEEEeHH
Confidence 7889999999999997766432 12234443 2 22344444443322 1 00 0011233
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEec
Q 039283 279 LLQEKLKKQLSGKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTH 328 (600)
Q Consensus 279 ~l~~~l~~~L~~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTt 328 (600)
.+..... .+.++--+||+|+++......+..+...+. ...++++|.
T Consensus 181 ~l~~~~~-~~~~~~~llIiDEaH~l~~~~~~~i~~~~~---~~~~l~LSA 226 (237)
T 2fz4_A 181 SAYVNAE-KLGNRFMLLIFDEVHHLPAESYVQIAQMSI---APFRLGLTA 226 (237)
T ss_dssp HHHHTHH-HHTTTCSEEEEECSSCCCTTTHHHHHHTCC---CSEEEEEEE
T ss_pred HHHhhHH-HhcccCCEEEEECCccCCChHHHHHHHhcc---CCEEEEEec
Confidence 3333333 333445699999998765566766665554 233455554
No 289
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.08 E-value=0.092 Score=45.68 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+-|+|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999988764
No 290
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=92.02 E-value=0.083 Score=50.81 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=20.3
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998875
No 291
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.01 E-value=0.084 Score=50.64 Aligned_cols=22 Identities=27% Similarity=0.555 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999998865
No 292
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=92.00 E-value=0.084 Score=51.93 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.-.+++|+|+.|+|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 346899999999999999998875
No 293
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.99 E-value=0.084 Score=51.13 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-.+++|+|+.|+|||||++.+..
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 35899999999999999998865
No 294
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.99 E-value=0.087 Score=50.90 Aligned_cols=22 Identities=36% Similarity=0.507 Sum_probs=20.4
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998876
No 295
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=91.97 E-value=0.078 Score=48.44 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.-.|+|+|.+|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999988764
No 296
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.96 E-value=0.087 Score=48.04 Aligned_cols=22 Identities=36% Similarity=0.335 Sum_probs=19.8
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
+.|.|.|++|+||||||..+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999988875
No 297
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.92 E-value=0.08 Score=50.57 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999998875
No 298
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.87 E-value=0.082 Score=49.75 Aligned_cols=25 Identities=36% Similarity=0.271 Sum_probs=21.7
Q ss_pred CCceEEEEEccCCChHHHHHHHHhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
....+|+|.|+.|+|||||++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999988875
No 299
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.79 E-value=0.098 Score=50.11 Aligned_cols=26 Identities=31% Similarity=0.316 Sum_probs=22.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...++.+.|.||+|||||+..+....
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l 38 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYL 38 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 45788999999999999998887643
No 300
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.77 E-value=0.084 Score=50.54 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999998875
No 301
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.76 E-value=0.084 Score=51.36 Aligned_cols=22 Identities=41% Similarity=0.593 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 48 e~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999998875
No 302
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.74 E-value=0.093 Score=50.66 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 34 e~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999998865
No 303
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.63 E-value=0.13 Score=46.16 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999998763
No 304
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.62 E-value=0.085 Score=51.29 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++.|+|++|+|||||+..+...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 59999999999999999988763
No 305
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.60 E-value=0.13 Score=51.19 Aligned_cols=26 Identities=23% Similarity=0.334 Sum_probs=22.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...+++|+|++|+||||++..+....
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999998887643
No 306
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.60 E-value=0.099 Score=53.13 Aligned_cols=24 Identities=33% Similarity=0.176 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+++|+|++|+|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 446999999999999999999885
No 307
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.59 E-value=0.19 Score=52.47 Aligned_cols=96 Identities=19% Similarity=0.207 Sum_probs=52.4
Q ss_pred HHHHHhcCCCCCCCCceEEEEEccCCChHHHHH-HHHhhhhhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhhc----
Q 039283 196 IVELLLRDDLRADDGFSVVSIKGLGGVGKTTLA-QLVNKDDRVQRHFQI-KAWTCVSEDFD-VFTVSKSILNSIAS---- 268 (600)
Q Consensus 196 l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~l~~il~~l~~---- 268 (600)
.++.|..- +.-+-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++... ..++...+...=..
T Consensus 152 aID~l~Pi-----grGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tv 222 (502)
T 2qe7_A 152 AIDSMIPI-----GRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTI 222 (502)
T ss_dssp HHHHSSCC-----BTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEE
T ss_pred eccccccc-----ccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeE
Confidence 55655433 23457899999999999995 5666632 2343 46677776543 34444444432110
Q ss_pred ---CCCCCcccHHHH----HHHHHHHh--CCCcEEEEEecC
Q 039283 269 ---DQCTDKDDLNLL----QEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 269 ---~~~~~~~~~~~l----~~~l~~~L--~~k~~LlVlDdv 300 (600)
.....+...... .-.+.+++ .++.+||++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsl 263 (502)
T 2qe7_A 223 VVTASASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDL 263 (502)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecH
Confidence 011011111111 11223333 479999999998
No 308
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.54 E-value=0.11 Score=49.27 Aligned_cols=24 Identities=38% Similarity=0.461 Sum_probs=21.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...|+|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999998764
No 309
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=91.53 E-value=0.14 Score=52.99 Aligned_cols=27 Identities=30% Similarity=0.352 Sum_probs=22.6
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
+...+|+|+|++|+||||++..+....
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l 123 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYI 123 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345799999999999999998887644
No 310
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=91.49 E-value=0.3 Score=46.07 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=26.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEE
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWT 247 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv 247 (600)
...|.|.|+.|+||||+++.+...... ..+..+...
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~ 62 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRT 62 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeee
Confidence 368999999999999999999875432 234434433
No 311
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.47 E-value=0.11 Score=49.04 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=21.7
Q ss_pred CCceEEEEEccCCChHHHHHHHHhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
....+|+|.|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4456899999999999999998875
No 312
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=91.37 E-value=0.13 Score=45.57 Aligned_cols=26 Identities=35% Similarity=0.392 Sum_probs=21.9
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567899999999999999988753
No 313
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=91.36 E-value=0.099 Score=45.52 Aligned_cols=22 Identities=32% Similarity=0.579 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-|.|+|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4889999999999999988754
No 314
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=91.25 E-value=0.13 Score=45.47 Aligned_cols=24 Identities=42% Similarity=0.498 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356899999999999999988754
No 315
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=91.23 E-value=0.1 Score=50.44 Aligned_cols=22 Identities=32% Similarity=0.522 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998763
No 316
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.22 E-value=0.28 Score=48.19 Aligned_cols=41 Identities=20% Similarity=0.212 Sum_probs=28.1
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCC
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSE 251 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~ 251 (600)
...++|+|+|-||+||||+|..+...... .-..++-|+...
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~--~G~~VlliD~D~ 79 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI--LGKRVLQIGCDP 79 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEESS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 45688999999999999999877664322 222455666553
No 317
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.20 E-value=0.13 Score=45.00 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999988763
No 318
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=91.13 E-value=0.33 Score=44.95 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=21.8
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDR 236 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~ 236 (600)
..|.|.|+.|+||||+++.+.....
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987543
No 319
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=91.12 E-value=0.11 Score=50.08 Aligned_cols=22 Identities=41% Similarity=0.502 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999998875
No 320
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.11 E-value=0.13 Score=47.61 Aligned_cols=26 Identities=31% Similarity=0.368 Sum_probs=22.1
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.....|.|+|++|+|||||+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999988764
No 321
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.09 E-value=0.1 Score=51.44 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-.+++|+|+.|+|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 35899999999999999998865
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.08 E-value=0.12 Score=46.43 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.8
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+.+|+|+.|+|||||+..++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999998865
No 323
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.02 E-value=0.11 Score=51.74 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++++|+|+.|.|||||.+.+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHS
T ss_pred cccEEEEEecCCCCHHHHHHHHHhh
Confidence 4689999999999999999998753
No 324
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=90.97 E-value=0.14 Score=46.19 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988764
No 325
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.93 E-value=0.18 Score=47.61 Aligned_cols=49 Identities=18% Similarity=0.131 Sum_probs=31.0
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKS 261 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~ 261 (600)
.-.++.|.|.+|+|||+||.+++.+... ..-..+++++... +...+...
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~-~~~~~v~~~s~E~--~~~~~~~~ 77 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLEE--RARDLRRE 77 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSS--CHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH-hcCCCceeecccC--CHHHHHHH
Confidence 3468999999999999999887653222 2233455665543 34444443
No 326
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=90.92 E-value=0.14 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.049 Sum_probs=19.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++.|+|+.|+||||++..+...
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999666543
No 327
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=90.85 E-value=0.12 Score=46.56 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.0
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36889999999999999988754
No 328
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.85 E-value=0.25 Score=48.19 Aligned_cols=42 Identities=12% Similarity=0.127 Sum_probs=29.1
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
++++.+.|...+.........|+|+|.+|+|||||...+...
T Consensus 8 ~~~l~~~l~~~~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~ 49 (299)
T 2aka_B 8 VNRLQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGR 49 (299)
T ss_dssp HHHHHHHHTTSCCCTTCCCCEEEEEEBTTSCHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCCCCCCCeEEEEeCCCCCHHHHHHHHHCC
Confidence 345555554432212345678999999999999999998764
No 329
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.82 E-value=0.13 Score=52.25 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
++|+|.|+.|+||||||..+..
T Consensus 3 ~~i~i~GptgsGKttla~~La~ 24 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQ 24 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHH
Confidence 5899999999999999988876
No 330
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.82 E-value=0.12 Score=45.33 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=19.8
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999988763
No 331
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=90.79 E-value=0.46 Score=49.65 Aligned_cols=100 Identities=20% Similarity=0.248 Sum_probs=53.7
Q ss_pred HHHHHhcCCCCCCCCceEEEEEccCCChHHHHH-HHHhhhhhhh----ccCC-ceEEEEeCCCCC-HHHHHHHHHHHhhc
Q 039283 196 IVELLLRDDLRADDGFSVVSIKGLGGVGKTTLA-QLVNKDDRVQ----RHFQ-IKAWTCVSEDFD-VFTVSKSILNSIAS 268 (600)
Q Consensus 196 l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA-~~v~~~~~~~----~~F~-~~~wv~vs~~~~-~~~~l~~il~~l~~ 268 (600)
.++.|..- +.-+-++|.|.+|+|||+|| ..+.+..... ++-+ .++++-+++... ..++...+...=..
T Consensus 152 aID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m 226 (510)
T 2ck3_A 152 AVDSLVPI-----GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM 226 (510)
T ss_dssp HHHHHSCC-----BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCG
T ss_pred eecccccc-----ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCc
Confidence 55666443 23457899999999999995 5666643210 1234 356777776643 44444554432110
Q ss_pred -------CCCCCcccHHHH----HHHHHHHh--CCCcEEEEEecC
Q 039283 269 -------DQCTDKDDLNLL----QEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 269 -------~~~~~~~~~~~l----~~~l~~~L--~~k~~LlVlDdv 300 (600)
.....+...... .-.+.+++ .++.+||++||+
T Consensus 227 ~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 271 (510)
T 2ck3_A 227 KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDL 271 (510)
T ss_dssp GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred ccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCH
Confidence 011011111111 11223333 479999999998
No 332
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.79 E-value=0.12 Score=44.96 Aligned_cols=23 Identities=35% Similarity=0.471 Sum_probs=19.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999888753
No 333
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.76 E-value=0.12 Score=45.37 Aligned_cols=22 Identities=41% Similarity=0.457 Sum_probs=19.0
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
--|+|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999988853
No 334
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.75 E-value=0.13 Score=45.03 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-|+|+|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988763
No 335
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=90.74 E-value=0.54 Score=49.56 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=38.9
Q ss_pred HHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCH-HHHHHH
Q 039283 196 IVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDV-FTVSKS 261 (600)
Q Consensus 196 l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~-~~~l~~ 261 (600)
.++.|..- .+-+-++|.|.+|+|||+|+..+.+. .+-+.++++-+++.... .+++.+
T Consensus 217 vID~l~Pi-----gkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 217 VIDTFFPQ-----AKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHSCE-----ETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred hhhccCCc-----ccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 56666433 24468899999999999999988653 23356778888877653 344444
No 336
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.73 E-value=0.12 Score=52.01 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|.|+.|+|||||.+.+.-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999998865
No 337
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=90.71 E-value=0.093 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
....|+|.|..|+||||+++.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 447899999999999999988775
No 338
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=90.71 E-value=0.12 Score=45.28 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.8
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-|+|+|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 578999999999999988864
No 339
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=90.70 E-value=0.13 Score=44.86 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.7
Q ss_pred EEEEccCCChHHHHHHHHhhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~ 234 (600)
|+|+|.+|+|||||...+...
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999988753
No 340
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=90.70 E-value=0.2 Score=44.34 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.0
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..--|+|+|.+|+|||||...+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3456889999999999999988754
No 341
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.67 E-value=0.13 Score=45.10 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-|+|+|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999888754
No 342
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.66 E-value=0.13 Score=50.20 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-.+++|+|+.|+|||||.+.+..
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~G 86 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMG 86 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999875
No 343
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.65 E-value=0.13 Score=45.18 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=20.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999888754
No 344
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=90.63 E-value=0.08 Score=57.46 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=19.2
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-|.++|++|+|||+||+.+.+
T Consensus 329 ~vLL~GppGtGKT~LAr~la~ 349 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISR 349 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSST
T ss_pred ceEEECCCchHHHHHHHHHHH
Confidence 588999999999999998876
No 345
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=90.62 E-value=0.3 Score=45.76 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=18.9
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...|.|.|+.|+||||+++.+.+..
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998754
No 346
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.60 E-value=0.16 Score=45.66 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3457889999999999999988764
No 347
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.56 E-value=0.13 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46889999999999999988764
No 348
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.51 E-value=0.13 Score=46.14 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=20.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..--|+|+|.+|+|||||+..+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999988764
No 349
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=90.51 E-value=0.2 Score=49.29 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHh
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVN 232 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~ 232 (600)
+++|.+.+. -.+++|.|++|+|||||.+.+.
T Consensus 156 i~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE---------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH
Confidence 566777662 2488999999999999999886
No 350
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=90.48 E-value=0.52 Score=43.86 Aligned_cols=23 Identities=26% Similarity=0.170 Sum_probs=19.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-.|.+.|.||+||||+|..+...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 35889999999999998777654
No 351
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=90.48 E-value=0.13 Score=46.21 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=20.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999877653
No 352
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.45 E-value=0.16 Score=45.12 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999998763
No 353
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.45 E-value=0.19 Score=43.85 Aligned_cols=23 Identities=39% Similarity=0.514 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.-|+|+|.+|+|||||...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999988754
No 354
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=90.43 E-value=0.21 Score=51.53 Aligned_cols=89 Identities=12% Similarity=0.197 Sum_probs=48.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhh-ccCC-ceEEEEeCCCC-CHHHHHHHHHHH--hhc-----CCCCCcccHHH--
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQ-RHFQ-IKAWTCVSEDF-DVFTVSKSILNS--IAS-----DQCTDKDDLNL-- 279 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~-~~F~-~~~wv~vs~~~-~~~~~l~~il~~--l~~-----~~~~~~~~~~~-- 279 (600)
+-++|.|.+|+|||+|+..+.+..... ++-+ .++++-+++.. ...+++.++... +.. .....+.....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~~a 231 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERIAT 231 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHHHH
Confidence 457899999999999999888743321 1111 45566666543 344555554432 110 01101111111
Q ss_pred --HHHHHHHHh---CCCcEEEEEecC
Q 039283 280 --LQEKLKKQL---SGKKFLLVLDDV 300 (600)
Q Consensus 280 --l~~~l~~~L---~~k~~LlVlDdv 300 (600)
..-.+.+++ .++.+||++||+
T Consensus 232 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 232 PRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111234444 378999999998
No 355
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=90.36 E-value=0.16 Score=45.48 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999988764
No 356
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.34 E-value=0.36 Score=50.42 Aligned_cols=96 Identities=16% Similarity=0.202 Sum_probs=52.5
Q ss_pred HHHHHhcCCCCCCCCceEEEEEccCCChHHHHH-HHHhhhhhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhhc----
Q 039283 196 IVELLLRDDLRADDGFSVVSIKGLGGVGKTTLA-QLVNKDDRVQRHFQI-KAWTCVSEDFD-VFTVSKSILNSIAS---- 268 (600)
Q Consensus 196 l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~l~~il~~l~~---- 268 (600)
.++.|..- +.-+-++|.|.+|+|||+|| ..+.+.. .-+. ++++-+++... ..++...+...=..
T Consensus 165 aID~l~Pi-----grGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtv 235 (515)
T 2r9v_A 165 AIDSMIPI-----GRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTT 235 (515)
T ss_dssp HHHHHSCE-----ETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEE
T ss_pred cccccccc-----ccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeE
Confidence 55555432 23457899999999999995 5666632 2343 46677776543 44455555432110
Q ss_pred ---CCCCCcccHHHH----HHHHHHHh--CCCcEEEEEecC
Q 039283 269 ---DQCTDKDDLNLL----QEKLKKQL--SGKKFLLVLDDV 300 (600)
Q Consensus 269 ---~~~~~~~~~~~l----~~~l~~~L--~~k~~LlVlDdv 300 (600)
.....+...... .-.+.+++ .++.+||++||+
T Consensus 236 vV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsl 276 (515)
T 2r9v_A 236 VVVASASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDL 276 (515)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccH
Confidence 011011111111 11223333 479999999998
No 357
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.32 E-value=0.14 Score=45.27 Aligned_cols=24 Identities=33% Similarity=0.454 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999988753
No 358
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.30 E-value=0.14 Score=51.44 Aligned_cols=22 Identities=36% Similarity=0.610 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|.|+.|+|||||.+.+.-
T Consensus 42 e~~~llGpnGsGKSTLLr~iaG 63 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAG 63 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999998864
No 359
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.29 E-value=0.14 Score=44.85 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=19.9
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45889999999999999888753
No 360
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.29 E-value=0.17 Score=44.89 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=21.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999888753
No 361
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.26 E-value=0.14 Score=46.11 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=20.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346889999999999999888754
No 362
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=90.24 E-value=0.36 Score=53.03 Aligned_cols=62 Identities=24% Similarity=0.348 Sum_probs=36.6
Q ss_pred chHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHH
Q 039283 191 KDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSIL 263 (600)
Q Consensus 191 ~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il 263 (600)
...+.+...|... .+..|+||+|.|||+.+..+.... +.. ...+.++......+..++..+.
T Consensus 193 ~Q~~AV~~al~~~--------~~~lI~GPPGTGKT~ti~~~I~~l-~~~--~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 193 SQKEAVLFALSQK--------ELAIIHGPPGTGKTTTVVEIILQA-VKQ--GLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp HHHHHHHHHHHCS--------SEEEEECCTTSCHHHHHHHHHHHH-HHT--TCCEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC--------CceEEECCCCCCHHHHHHHHHHHH-HhC--CCeEEEEcCchHHHHHHHHHHH
Confidence 4455666666432 378899999999996554433321 222 2356777665555555555543
No 363
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=90.23 E-value=0.2 Score=44.38 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...-|+|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999988764
No 364
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.17 E-value=0.17 Score=50.91 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=22.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...+|+|+|.+|+|||||...+...
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHH
Confidence 4679999999999999999988763
No 365
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.15 E-value=0.15 Score=44.58 Aligned_cols=23 Identities=26% Similarity=0.283 Sum_probs=19.9
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999888753
No 366
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.14 E-value=0.14 Score=45.96 Aligned_cols=22 Identities=27% Similarity=0.385 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-|+|+|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999988764
No 367
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=90.09 E-value=0.15 Score=51.71 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 5899999999999999998865
No 368
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=90.00 E-value=0.13 Score=45.78 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=20.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345889999999999999988763
No 369
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=89.98 E-value=0.15 Score=46.08 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.7
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..|+|+|.+|+|||||...+..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999998875
No 370
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.96 E-value=0.14 Score=45.43 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...-|+|+|.+|+|||||+..+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4456899999999999999988764
No 371
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=89.95 E-value=0.19 Score=50.37 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+++|+|++|+|||||.+.+..
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999998875
No 372
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.95 E-value=0.17 Score=50.94 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|.|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAG 51 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHC
Confidence 5899999999999999998865
No 373
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=89.94 E-value=0.16 Score=44.92 Aligned_cols=25 Identities=28% Similarity=0.216 Sum_probs=21.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...-|+|+|.+|+|||||...+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3457899999999999999998764
No 374
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.92 E-value=0.16 Score=46.14 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=19.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.--|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999988864
No 375
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.91 E-value=0.16 Score=45.81 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=19.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.--|+|+|.+|+|||||++.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~ 36 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYS 36 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999976654
No 376
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.90 E-value=0.18 Score=50.88 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=20.0
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHhc
Confidence 5899999999999999998864
No 377
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.90 E-value=0.21 Score=43.80 Aligned_cols=24 Identities=33% Similarity=0.368 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999988653
No 378
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.88 E-value=0.18 Score=50.94 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|.|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAG 51 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 5899999999999999998865
No 379
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=89.84 E-value=0.17 Score=51.29 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...++|+|+.|+|||||++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 380
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.83 E-value=0.18 Score=46.02 Aligned_cols=22 Identities=32% Similarity=0.521 Sum_probs=19.6
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.-|+|+|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4688999999999999998875
No 381
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=89.83 E-value=0.11 Score=52.92 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=32.1
Q ss_pred ccccccchHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 185 EVYGREKDKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 185 ~~vGR~~e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.++|....+.++...+.... .....|.|+|.+|+||+++|+.+...
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a----~~~~~vli~GesGtGKe~lAr~ih~~ 175 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIA----KSKAPVLITGESGTGKEIVARLIHRY 175 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHH----TSCSCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccccchHHHHHHhhhhhhh----ccchhheEEeCCCchHHHHHHHHHHh
Confidence 47788777776666553221 11134779999999999999988753
No 382
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.83 E-value=0.16 Score=45.55 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999988753
No 383
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.82 E-value=0.17 Score=45.37 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45889999999999999998764
No 384
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.80 E-value=0.16 Score=45.43 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=21.0
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..--|+|+|.+|+|||||+..+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3456889999999999999988754
No 385
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.79 E-value=0.64 Score=52.02 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=23.5
Q ss_pred hHHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHh
Q 039283 192 DKEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVN 232 (600)
Q Consensus 192 e~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~ 232 (600)
..+.+...+... .++.|+|+.|.||||++..+.
T Consensus 98 q~~~i~~~l~~~--------~~vii~gpTGSGKTtllp~ll 130 (773)
T 2xau_A 98 QRDEFLKLYQNN--------QIMVFVGETGSGKTTQIPQFV 130 (773)
T ss_dssp GHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhCC--------CeEEEECCCCCCHHHHHHHHH
Confidence 445556665433 489999999999999665554
No 386
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.77 E-value=0.16 Score=44.91 Aligned_cols=23 Identities=30% Similarity=0.250 Sum_probs=19.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999988753
No 387
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=89.77 E-value=0.77 Score=47.81 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHHHhcCCCCCCCCceEEEEEccCCChHHHHH-HHHhhhhhhhccCCc-eEEEEeCCCCC-HHHHHHHHHHHhhcC---
Q 039283 196 IVELLLRDDLRADDGFSVVSIKGLGGVGKTTLA-QLVNKDDRVQRHFQI-KAWTCVSEDFD-VFTVSKSILNSIASD--- 269 (600)
Q Consensus 196 l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA-~~v~~~~~~~~~F~~-~~wv~vs~~~~-~~~~l~~il~~l~~~--- 269 (600)
.++.|..- +.-+-++|.|.+|+|||+|+ ..+.+. .+-+. ++++-+++... ..++...+.+.=...
T Consensus 152 aID~l~Pi-----grGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~~tv 222 (513)
T 3oaa_A 152 AVDSMIPI-----GRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALANTI 222 (513)
T ss_dssp HHHHHSCC-----BTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCSTTEE
T ss_pred eecccccc-----ccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCcccceE
Confidence 55555433 23457899999999999996 556652 23333 56777877643 444555543321000
Q ss_pred ----CCCCcccHH--------HHHHHHHHHhCCCcEEEEEecC
Q 039283 270 ----QCTDKDDLN--------LLQEKLKKQLSGKKFLLVLDDV 300 (600)
Q Consensus 270 ----~~~~~~~~~--------~l~~~l~~~L~~k~~LlVlDdv 300 (600)
...++.... ...+.+++ +++.+||++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 223 VVVATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred EEEECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 010111111 12223333 589999999998
No 388
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.75 E-value=0.16 Score=50.97 Aligned_cols=22 Identities=32% Similarity=0.444 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|.|+.|+|||||.+.+.-
T Consensus 27 e~~~llGpnGsGKSTLLr~iaG 48 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAG 48 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCccHHHHHHHHHc
Confidence 5899999999999999998865
No 389
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.74 E-value=0.17 Score=51.38 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|.|+.|+|||||.+.+.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaG 51 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAG 51 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCcHHHHHHHHHHc
Confidence 5899999999999999998865
No 390
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=89.72 E-value=0.17 Score=45.69 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 391
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=89.71 E-value=0.11 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=20.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
....|+|+|.+|+|||||.+.+..
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 346899999999999999987765
No 392
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.66 E-value=0.55 Score=50.06 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.-.++.|.|++|+|||||++.++..
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998864
No 393
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=89.66 E-value=0.17 Score=45.12 Aligned_cols=23 Identities=30% Similarity=0.325 Sum_probs=19.8
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999888753
No 394
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=89.58 E-value=0.24 Score=51.14 Aligned_cols=90 Identities=10% Similarity=0.159 Sum_probs=48.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhh--------ccCC-ceEEEEeCCCC-CHHHHHHHHHHH--hhc-----CCCCC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQ--------RHFQ-IKAWTCVSEDF-DVFTVSKSILNS--IAS-----DQCTD 273 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~--------~~F~-~~~wv~vs~~~-~~~~~l~~il~~--l~~-----~~~~~ 273 (600)
-+-++|.|.+|+|||+|+..+.+..... ++-+ .++++-+++.. ...++..++... +.. .....
T Consensus 147 GQr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~ 226 (464)
T 3gqb_B 147 GQKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADD 226 (464)
T ss_dssp TCBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTS
T ss_pred CCEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCC
Confidence 3467899999999999999888754321 1111 45566666543 344444544332 110 00101
Q ss_pred cccHHH----HHHHHHHHh---CCCcEEEEEecC
Q 039283 274 KDDLNL----LQEKLKKQL---SGKKFLLVLDDV 300 (600)
Q Consensus 274 ~~~~~~----l~~~l~~~L---~~k~~LlVlDdv 300 (600)
+..... ..-.+.+++ .++.+||++||+
T Consensus 227 p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 227 PTIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 111111 111234444 378999999998
No 395
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.57 E-value=0.19 Score=50.88 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|.|+.|+|||||.+.+.-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 5899999999999999998864
No 396
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=89.56 E-value=0.17 Score=46.06 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=20.0
Q ss_pred CceEEEEEccCCChHHHHHHHHh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVN 232 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~ 232 (600)
...-|+|+|.+|+|||||...+.
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTC
T ss_pred cEEEEEEECCCCCCHHHHHHHHH
Confidence 44578999999999999998885
No 397
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.54 E-value=0.68 Score=49.00 Aligned_cols=48 Identities=15% Similarity=0.243 Sum_probs=34.8
Q ss_pred HHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC
Q 039283 196 IVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED 252 (600)
Q Consensus 196 l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 252 (600)
.++.|..- .+-.-++|.|.+|+|||+|+..+.+.. +-+.++++-+++.
T Consensus 222 vID~l~Pi-----grGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER 269 (600)
T 3vr4_A 222 VIDTFFPV-----TKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGER 269 (600)
T ss_dssp HHHHHSCC-----BTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEEC
T ss_pred hhhccCCc-----cCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEeccc
Confidence 56666543 244688999999999999999887632 3356677777765
No 398
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.54 E-value=0.37 Score=49.75 Aligned_cols=26 Identities=27% Similarity=0.248 Sum_probs=22.7
Q ss_pred CCCceEEEEEccCCChHHHHHHHHhh
Q 039283 208 DDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 208 ~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
....++..|.|.+|.||||+.+..++
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHHhc
Confidence 45778999999999999999988764
No 399
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=89.52 E-value=0.16 Score=47.15 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=19.6
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|+|+|+.|+||||+++.+..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999988865
No 400
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=89.51 E-value=0.23 Score=46.41 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....|+|+|.+|+|||||+..+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999988764
No 401
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=89.51 E-value=0.18 Score=44.85 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=20.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999888753
No 402
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=89.50 E-value=0.24 Score=51.41 Aligned_cols=100 Identities=11% Similarity=0.065 Sum_probs=54.2
Q ss_pred HHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhhhhhhccC--CceEEEEeCCCC-CHHHHHHHHHHHhhcC---
Q 039283 196 IVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHF--QIKAWTCVSEDF-DVFTVSKSILNSIASD--- 269 (600)
Q Consensus 196 l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F--~~~~wv~vs~~~-~~~~~l~~il~~l~~~--- 269 (600)
.++.|..- ..-+-++|.|.+|+|||+|+..+.++......- +.++++-+++.. ...+++.++...=...
T Consensus 142 ~ID~l~pi-----grGQr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtv 216 (469)
T 2c61_A 142 TIDGTNTL-----VRGQKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAV 216 (469)
T ss_dssp HHHTTSCC-----BTTCBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEE
T ss_pred eeeeeecc-----ccCCEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceE
Confidence 45555433 233567788999999999999988754332111 245566666543 3455555555431110
Q ss_pred ----CCCCcccHHH----HHHHHHHHh---CCCcEEEEEecC
Q 039283 270 ----QCTDKDDLNL----LQEKLKKQL---SGKKFLLVLDDV 300 (600)
Q Consensus 270 ----~~~~~~~~~~----l~~~l~~~L---~~k~~LlVlDdv 300 (600)
....+..... ..-.+.+++ .++.+||++||+
T Consensus 217 vV~~tsd~p~~~r~~~~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 217 VFLNLADDPAVERIVTPRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp EEEEETTSCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1101111111 111233343 379999999997
No 403
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.49 E-value=0.21 Score=50.78 Aligned_cols=109 Identities=11% Similarity=0.106 Sum_probs=54.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceE-EEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKA-WTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~-wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~ 289 (600)
..+++|+|+.|+|||||++.+...... .....+ ++. .+... ....-...+ .+.. ...+...+...+...+.
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~--~~~g~I~~~e--~~~e~--~~~~~~~~v-~Q~~-~g~~~~~~~~~l~~~L~ 207 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIE--DPIEY--VFKHKKSIV-NQRE-VGEDTKSFADALRAALR 207 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHH--HSCCEEEEEE--SSCCS--CCCCSSSEE-EEEE-BTTTBSCSHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCc--CCCcEEEEec--ccHhh--hhccCceEE-Eeee-cCCCHHHHHHHHHHHhh
Confidence 468999999999999999988763322 112333 332 11110 000000000 0000 00011122446677777
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccChH
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQG 332 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~~ 332 (600)
..+=+|++|.+. +.+......... ..|..|+.|+....
T Consensus 208 ~~pd~illdE~~--d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 208 EDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp SCCSEEEESCCC--SHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred hCcCEEEECCCC--CHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 777899999985 334433332222 23556777776543
No 404
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=89.46 E-value=0.18 Score=44.95 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...-|+|+|.+|+|||||+..+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999888753
No 405
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.43 E-value=0.21 Score=53.20 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...+|.++|++|.||||+|+.+...
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~ 58 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRY 58 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999998763
No 406
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.38 E-value=0.19 Score=44.85 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..-|+|+|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356889999999999999988754
No 407
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=89.36 E-value=0.2 Score=45.39 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=21.9
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.....|+|+|.+|+|||||...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999988764
No 408
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.36 E-value=0.19 Score=45.62 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999988764
No 409
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.34 E-value=0.19 Score=44.58 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=20.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999988754
No 410
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.34 E-value=0.16 Score=52.13 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 446999999999999999999876
No 411
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=89.33 E-value=0.18 Score=46.84 Aligned_cols=22 Identities=32% Similarity=0.303 Sum_probs=18.9
Q ss_pred EEEEEccCCChHHHHHHHHhhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
-|.|+|.+|+|||+|+..+..+
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4789999999999999887653
No 412
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.32 E-value=0.19 Score=44.64 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999888764
No 413
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.30 E-value=0.27 Score=43.80 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..--|+|+|.+|+|||||...+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456899999999999999988754
No 414
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.30 E-value=0.15 Score=51.31 Aligned_cols=22 Identities=32% Similarity=0.518 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+.-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999998864
No 415
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=89.28 E-value=0.19 Score=45.36 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 346889999999999999988764
No 416
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.27 E-value=0.28 Score=48.22 Aligned_cols=32 Identities=34% Similarity=0.533 Sum_probs=25.9
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhh
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
++++..++. -.+++|+|++|+|||||.+.+..
T Consensus 160 v~~lf~~l~---------geiv~l~G~sG~GKSTll~~l~g 191 (301)
T 1u0l_A 160 IEELKEYLK---------GKISTMAGLSGVGKSSLLNAINP 191 (301)
T ss_dssp HHHHHHHHS---------SSEEEEECSTTSSHHHHHHHHST
T ss_pred HHHHHHHhc---------CCeEEEECCCCCcHHHHHHHhcc
Confidence 566777663 14899999999999999998875
No 417
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=89.25 E-value=0.18 Score=45.78 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=19.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.--|+|+|.+|+|||||++.+.+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999987665
No 418
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.21 E-value=0.19 Score=46.06 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..-|+|+|.+|+|||||+..+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999988753
No 419
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.18 E-value=0.2 Score=46.07 Aligned_cols=25 Identities=28% Similarity=0.189 Sum_probs=20.4
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999988764
No 420
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.17 E-value=0.2 Score=45.13 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999988753
No 421
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=89.17 E-value=0.51 Score=47.32 Aligned_cols=43 Identities=21% Similarity=0.207 Sum_probs=28.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCC
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSED 252 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~ 252 (600)
..+++.+.|-||+||||+|..+.........-..+.-++....
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D~~ 59 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTDPA 59 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCSS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCCC
Confidence 4589999999999999999877653321022334555665533
No 422
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.12 E-value=0.26 Score=44.87 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...-|+|+|.+|+|||||...+...
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3457899999999999999888754
No 423
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.12 E-value=0.19 Score=46.14 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999988764
No 424
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.12 E-value=0.17 Score=49.82 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=18.5
Q ss_pred EEEEEccCCChHHHHHHHHhh
Q 039283 213 VVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 213 vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-|+|+|++|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 459999999999999998764
No 425
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=89.10 E-value=0.21 Score=49.35 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=23.4
Q ss_pred CCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 208 DDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 208 ~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 456789999999999999999988753
No 426
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=89.09 E-value=0.2 Score=45.73 Aligned_cols=25 Identities=36% Similarity=0.343 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...-|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4457899999999999999988754
No 427
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.09 E-value=0.21 Score=46.79 Aligned_cols=23 Identities=26% Similarity=0.409 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..++|.|++|+||||+|+.+...
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~ 31 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEK 31 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988763
No 428
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.08 E-value=0.2 Score=45.63 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999988764
No 429
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=89.06 E-value=0.24 Score=55.77 Aligned_cols=53 Identities=25% Similarity=0.221 Sum_probs=37.9
Q ss_pred CCCccccccchHHHHHHHHhcCCCC-------CCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 182 NEDEVYGREKDKEAIVELLLRDDLR-------ADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 182 ~~~~~vGR~~e~~~l~~~L~~~~~~-------~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.-..++|.+..++.|.+.+.-.... .-.....+.++|++|+|||+||+.++..
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~ 534 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHH
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHH
Confidence 3345789888888888876432100 1123456889999999999999999874
No 430
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.04 E-value=0.2 Score=45.71 Aligned_cols=25 Identities=36% Similarity=0.434 Sum_probs=21.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...-|+|+|.+|+|||||+..+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3457899999999999999988764
No 431
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=89.03 E-value=0.2 Score=45.30 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999988764
No 432
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=89.01 E-value=0.2 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999988754
No 433
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=89.00 E-value=0.2 Score=46.39 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=19.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..-|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999988763
No 434
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.97 E-value=0.49 Score=45.36 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=25.5
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVS 250 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 250 (600)
++|+|.|-||+||||+|..+..... ..-..+.-|+..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la--~~G~~VlliD~D 38 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLH--AMGKTIMVVGCD 38 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH--TTTCCEEEEEEC
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHH--HCCCcEEEEcCC
Confidence 5778889999999999987776432 222245556654
No 435
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.96 E-value=0.21 Score=45.17 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999988764
No 436
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.94 E-value=0.2 Score=51.09 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-.+++|+|+.|+|||||.+.+..
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHhC
Confidence 35899999999999999998864
No 437
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=88.93 E-value=0.29 Score=44.71 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.4
Q ss_pred CCceEEEEEccCCChHHHHHHHHhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
....+|+|+|++|+||+++|..+.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~ 33 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQS 33 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHH
Confidence 4567999999999999999987754
No 438
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.92 E-value=0.21 Score=45.03 Aligned_cols=23 Identities=30% Similarity=0.263 Sum_probs=19.9
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 45889999999999999888753
No 439
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.87 E-value=0.26 Score=43.75 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.5
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.-|.|.|++|+||||||..+..
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5788999999999999988765
No 440
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.87 E-value=0.37 Score=49.66 Aligned_cols=23 Identities=22% Similarity=0.291 Sum_probs=20.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
-.+++|+|+.|+|||||.+.+..
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999998876
No 441
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.83 E-value=0.21 Score=45.04 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=21.2
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..--|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999988764
No 442
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=88.77 E-value=0.56 Score=46.76 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=28.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF 253 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 253 (600)
..+++.+.|-||+||||+|..+.... ...-..+.-|+.....
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~l--a~~g~~vllid~D~~~ 56 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQL--AKVRRSVLLLSTDPAH 56 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH--TTSSSCEEEEECCSSC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHH--HhCCCcEEEEECCCCC
Confidence 45788999999999999997776532 2223345566655433
No 443
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=88.76 E-value=0.24 Score=48.73 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=21.5
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....|+|+|.+|+|||||...+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3468999999999999999988753
No 444
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=88.71 E-value=0.21 Score=45.38 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999888754
No 445
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.70 E-value=0.22 Score=44.75 Aligned_cols=24 Identities=25% Similarity=0.225 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999988753
No 446
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=88.68 E-value=0.42 Score=47.05 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEccCCChHHHHHHHHhhh
Q 039283 193 KEAIVELLLRDDLRADDGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 193 ~~~l~~~L~~~~~~~~~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
+.+|.+.+..-+. .......|+|+|.+|+|||||...+...
T Consensus 7 ~~~l~~~~~~~~~-~~~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 7 INKLQDVFNTLGS-DPLDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp HHHHHHHTTTSSS-CTTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCC-CCCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 3445555533221 1245678999999999999999988753
No 447
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.68 E-value=0.26 Score=46.49 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=21.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999988764
No 448
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.68 E-value=0.27 Score=43.95 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=21.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...-|+|+|.+|+|||||...+....
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34678999999999999999987643
No 449
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.68 E-value=0.25 Score=49.54 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=22.3
Q ss_pred CCceEEEEEccCCChHHHHHHHHhhh
Q 039283 209 DGFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 209 ~~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+..+++|+|.+|+|||||+..+...
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35689999999999999999888753
No 450
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.67 E-value=0.29 Score=42.45 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+.+|+|+.|.||||+..+++.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999988865
No 451
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=88.63 E-value=0.21 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=20.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999988753
No 452
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.61 E-value=0.21 Score=44.61 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999988753
No 453
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=88.55 E-value=0.32 Score=43.89 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=20.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999998764
No 454
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=88.50 E-value=0.21 Score=45.24 Aligned_cols=23 Identities=43% Similarity=0.520 Sum_probs=19.6
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999998764
No 455
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.48 E-value=0.23 Score=44.64 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999988764
No 456
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=88.48 E-value=0.42 Score=54.36 Aligned_cols=22 Identities=23% Similarity=0.095 Sum_probs=19.9
Q ss_pred CceEEEEEccCCChHHHHHHHH
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLV 231 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v 231 (600)
.-.+++|+|+.|.||||+.+.+
T Consensus 661 ~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 661 KQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp TBCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH
Confidence 3469999999999999999988
No 457
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.36 E-value=0.19 Score=50.84 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
..++|+|+.|+|||||++.+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4899999999999999999876
No 458
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.36 E-value=0.24 Score=49.78 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.9
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|++|+|||||++.+..
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g 237 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLG 237 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHC
T ss_pred CEEEEECCCCccHHHHHHHHhc
Confidence 4899999999999999988875
No 459
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.36 E-value=0.32 Score=43.63 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=20.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...-|+|+|.+|+|||||...+..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999998875
No 460
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=88.36 E-value=0.27 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=20.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999888754
No 461
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=88.35 E-value=0.58 Score=45.46 Aligned_cols=37 Identities=22% Similarity=0.133 Sum_probs=25.6
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVS 250 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 250 (600)
++|+|.|-||+||||+|..+...... .-..+.-|+..
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~--~G~rVlliD~D 39 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAE--MGKKVMIVGCD 39 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHH--TTCCEEEEEEC
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHH--CCCeEEEEecC
Confidence 67888999999999999877764322 22234555554
No 462
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.35 E-value=0.32 Score=43.90 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=20.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..--|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3456899999999999999988753
No 463
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.33 E-value=0.28 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=20.8
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...|+|+|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999988754
No 464
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=88.31 E-value=0.23 Score=45.31 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=20.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..-|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999988754
No 465
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.30 E-value=0.22 Score=44.29 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=20.6
Q ss_pred CceEEEEEccCCChHHHHHHHHhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
...-|+|+|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346789999999999999988864
No 466
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=88.29 E-value=0.24 Score=51.70 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=47.2
Q ss_pred CceEEEEEccCCChHHHHH-HHHhhhhhhhccCC-ceEEEEeCCCCC-HHHHHHHHHHHhhc-------CCCCCccc---
Q 039283 210 GFSVVSIKGLGGVGKTTLA-QLVNKDDRVQRHFQ-IKAWTCVSEDFD-VFTVSKSILNSIAS-------DQCTDKDD--- 276 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA-~~v~~~~~~~~~F~-~~~wv~vs~~~~-~~~~l~~il~~l~~-------~~~~~~~~--- 276 (600)
.-+-++|.|.+|+|||+|| ..+.+.. .-+ .++++-+++... ..++...+...=.. .....+..
T Consensus 162 rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~ 237 (507)
T 1fx0_A 162 RGQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQY 237 (507)
T ss_dssp TTCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTT
T ss_pred cCCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHH
Confidence 3457899999999999995 5666632 234 346677776543 33333333321100 00001111
Q ss_pred -----HHHHHHHHHHHhCCCcEEEEEecC
Q 039283 277 -----LNLLQEKLKKQLSGKKFLLVLDDV 300 (600)
Q Consensus 277 -----~~~l~~~l~~~L~~k~~LlVlDdv 300 (600)
.-...+.++. .++.+||++||+
T Consensus 238 ~a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 238 LAPYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1122333444 589999999998
No 467
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=88.24 E-value=0.31 Score=52.73 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.0
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...+|.|+|++|+||||+|+.+...
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~ 75 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEY 75 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 468
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=88.22 E-value=0.23 Score=45.88 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.1
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 356889999999999999988753
No 469
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=88.19 E-value=0.29 Score=44.27 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.2
Q ss_pred ceEEEEEccCCChHHHHHHHHhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.--|+|+|.+|+|||||+..+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 35689999999999999998865
No 470
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.15 E-value=0.24 Score=49.68 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=22.0
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.-.+++|.|+.|+|||||.+.+...
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3469999999999999999999874
No 471
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=88.15 E-value=0.28 Score=51.60 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.3
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+|.++|++|+||||+++.+...
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~ 62 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRY 62 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998764
No 472
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.14 E-value=0.3 Score=44.35 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=20.8
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...-|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467899999999999999988753
No 473
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=88.10 E-value=0.34 Score=51.20 Aligned_cols=25 Identities=8% Similarity=-0.078 Sum_probs=22.1
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...+|.+.|++|+||||+|+.+...
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~ 418 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLST 418 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHH
T ss_pred cceEEEecccCCCCHHHHHHHHHHH
Confidence 4478999999999999999999874
No 474
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=88.10 E-value=0.3 Score=45.02 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.0
Q ss_pred eEEEEEccCCChHHHHHHHHhhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
+.|+|-|..|+||||+++.+....
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999888743
No 475
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=88.06 E-value=0.23 Score=46.06 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=21.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 4567899999999999999998765
No 476
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=88.06 E-value=0.22 Score=53.26 Aligned_cols=24 Identities=38% Similarity=0.455 Sum_probs=21.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..+++|+|+.|+|||||++.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~ 392 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAAR 392 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHh
Confidence 368999999999999999999864
No 477
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.01 E-value=0.25 Score=44.59 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.2
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||+..+...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999988764
No 478
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.00 E-value=0.25 Score=45.25 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.0
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999888753
No 479
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=87.93 E-value=0.21 Score=44.95 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=20.7
Q ss_pred eEEEEEccCCChHHHHHHHHhhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
--|+|+|.+|+|||||...+....
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999887643
No 480
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.90 E-value=0.26 Score=45.10 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..-|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999988753
No 481
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=87.89 E-value=0.16 Score=45.25 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=10.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456899999999999999887653
No 482
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=87.86 E-value=0.26 Score=45.29 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=20.7
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
..--|+|+|.+|+|||||+..+...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999888753
No 483
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=87.83 E-value=0.26 Score=44.94 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=20.6
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||+..+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456899999999999999988653
No 484
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=87.77 E-value=0.34 Score=52.10 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=21.9
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
...+|.|.|++|+||||+|+.+...
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~ 419 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVT 419 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998764
No 485
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.68 E-value=0.3 Score=44.84 Aligned_cols=22 Identities=18% Similarity=0.232 Sum_probs=20.6
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+|.|.|+.|+||||+++.+..
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~ 28 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAE 28 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 486
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=87.63 E-value=0.28 Score=44.74 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.0
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.-|+|+|.+|+|||||...+...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46889999999999999888753
No 487
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.62 E-value=0.28 Score=45.30 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.1
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
--|+|+|.+|+|||||...+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46889999999999999988764
No 488
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=87.55 E-value=0.6 Score=43.95 Aligned_cols=40 Identities=28% Similarity=0.213 Sum_probs=26.4
Q ss_pred EEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCH
Q 039283 214 VSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDV 255 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~ 255 (600)
|+|.|-||+||||+|..+...... .-..+.-|+.....+.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~--~g~~VlliD~D~~~~l 42 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMAS--DYDKIYAVDGDPDSCL 42 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTT--TCSCEEEEEECTTSCH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCCcCh
Confidence 566999999999999887764322 2234556666544443
No 489
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=87.51 E-value=0.21 Score=49.79 Aligned_cols=80 Identities=18% Similarity=-0.011 Sum_probs=44.0
Q ss_pred eEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHhCCC
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCTDKDDLNLLQEKLKKQLSGK 291 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~~~~~~~~l~~~l~~~L~~k 291 (600)
..++|+|+.|+|||||++.+..-.. .-...+.+.-......... . +.+..-. + .-......+...|..+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~i~i~~~~e~~~~~~-~---~~i~~~~--g--gg~~~r~~la~aL~~~ 240 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP---KEERIISIEDTEEIVFKHH-K---NYTQLFF--G--GNITSADCLKSCLRMR 240 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC---TTSCEEEEESSCCCCCSSC-S---SEEEEEC--B--TTBCHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc---CCCcEEEECCeeccccccc-h---hEEEEEe--C--CChhHHHHHHHHhhhC
Confidence 4899999999999999998876321 2234455542221110000 0 0000000 0 1112334566677778
Q ss_pred cEEEEEecCCC
Q 039283 292 KFLLVLDDVWN 302 (600)
Q Consensus 292 ~~LlVlDdv~~ 302 (600)
+=+|++|.+-.
T Consensus 241 p~ilildE~~~ 251 (330)
T 2pt7_A 241 PDRIILGELRS 251 (330)
T ss_dssp CSEEEECCCCS
T ss_pred CCEEEEcCCCh
Confidence 88999999854
No 490
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=87.48 E-value=0.25 Score=50.82 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=18.8
Q ss_pred EEEEccCCChHHHHHHHHhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~ 233 (600)
++|+|+.|+|||||.+.++.
T Consensus 45 vaLvG~nGaGKSTLln~L~G 64 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFN 64 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 99999999999999999875
No 491
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=87.40 E-value=0.69 Score=42.08 Aligned_cols=40 Identities=23% Similarity=0.073 Sum_probs=26.4
Q ss_pred eEEEEE-ccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCC
Q 039283 212 SVVSIK-GLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDF 253 (600)
Q Consensus 212 ~vv~I~-G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~ 253 (600)
++|+|+ +-||+||||+|..+...... .-..+.-++.....
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~--~g~~vlliD~D~~~ 42 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSR--SGYNIAVVDTDPQM 42 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHH--TTCCEEEEECCTTC
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHH--CCCeEEEEECCCCC
Confidence 567777 77999999999887764332 22345566665443
No 492
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.37 E-value=0.35 Score=44.88 Aligned_cols=25 Identities=32% Similarity=0.400 Sum_probs=21.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDD 235 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~ 235 (600)
...|.|.|+.|+||||+++.+....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l 29 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKL 29 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999988743
No 493
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=87.29 E-value=0.73 Score=46.70 Aligned_cols=41 Identities=24% Similarity=0.233 Sum_probs=28.4
Q ss_pred CCCceEEEEEc-cCCChHHHHHHHHhhhhhhhccCCceEEEEeC
Q 039283 208 DDGFSVVSIKG-LGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVS 250 (600)
Q Consensus 208 ~~~~~vv~I~G-~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs 250 (600)
..+.++|+|+| -||+||||+|..+...... .-..++-+++.
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~--~g~rVlliD~D 181 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHAN--MGKKVFYLNIE 181 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHH--HTCCEEEEECC
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHh--CCCCEEEEECC
Confidence 35678888875 8999999999877664322 22346667765
No 494
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=87.25 E-value=0.55 Score=43.29 Aligned_cols=110 Identities=10% Similarity=-0.002 Sum_probs=50.5
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHHHHHHHHHHHhhcCCCC-CcccHHHHHHHHHHHhC
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVFTVSKSILNSIASDQCT-DKDDLNLLQEKLKKQLS 289 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~~~l~~il~~l~~~~~~-~~~~~~~l~~~l~~~L~ 289 (600)
-.+..++|..|.||||.+.......... ... ++.+..... ...-...+.+.++..... ...+.. .+.+.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~-g~k-Vli~k~~~d--~R~ge~~i~s~~g~~~~a~~~~~~~----~~~~~~~ 99 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA-KQH-AIVFKPCID--NRYSEEDVVSHNGLKVKAVPVSASK----DIFKHIT 99 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT-TCC-EEEEECC-------------------CCEEECSSGG----GGGGGCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC-CCE-EEEEEeccC--CcchHHHHHhhcCCeeEEeecCCHH----HHHHHHh
Confidence 4688999999999999886666543322 222 333332211 111122344444332110 001111 2222233
Q ss_pred CCcEEEEEecCCCCChhhHHhhcCCCCCCCCCcEEEEeccCh
Q 039283 290 GKKFLLVLDDVWNENYNSWRALSCPFGAGASGSKIVVTHRNQ 331 (600)
Q Consensus 290 ~k~~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTtR~~ 331 (600)
++--+|++|.+.--+.+.++.+. .+.+ .|..||+|.++.
T Consensus 100 ~~~dvViIDEaQF~~~~~V~~l~-~l~~--~~~~Vi~~Gl~~ 138 (214)
T 2j9r_A 100 EEMDVIAIDEVQFFDGDIVEVVQ-VLAN--RGYRVIVAGLDQ 138 (214)
T ss_dssp SSCCEEEECCGGGSCTTHHHHHH-HHHH--TTCEEEEEECSB
T ss_pred cCCCEEEEECcccCCHHHHHHHH-HHhh--CCCEEEEEeccc
Confidence 33349999998654434443332 2222 367899999854
No 495
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=87.20 E-value=1 Score=44.65 Aligned_cols=44 Identities=25% Similarity=0.181 Sum_probs=28.7
Q ss_pred ceEEEEEccCCChHHHHHHHHhhhhhhhccCCceEEEEeCCCCCHH
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKDDRVQRHFQIKAWTCVSEDFDVF 256 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~~~~~~~F~~~~wv~vs~~~~~~ 256 (600)
..++...|-||+||||+|..+..... ..-..+.-|+.....++.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA--~~G~rVLlvD~D~~~~l~ 57 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMA--RSGKKTLVISTDPAHSLS 57 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEECCSSCCHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHH--HCCCcEEEEeCCCCcCHH
Confidence 46778889999999999987765332 223345556654444443
No 496
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=87.18 E-value=0.3 Score=45.04 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=20.4
Q ss_pred ceEEEEEccCCChHHHHHHHHhhh
Q 039283 211 FSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 211 ~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.--|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999988753
No 497
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=87.11 E-value=0.36 Score=46.06 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.3
Q ss_pred CceEEEEEccCCChHHHHHHHHhhh
Q 039283 210 GFSVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 210 ~~~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
....|+|+|.+|+|||||...+...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999988753
No 498
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.05 E-value=0.25 Score=51.61 Aligned_cols=23 Identities=30% Similarity=0.307 Sum_probs=20.8
Q ss_pred eEEEEEccCCChHHHHHHHHhhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNKD 234 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~~ 234 (600)
.+++|+|+.|+|||||++.++.-
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 58999999999999999998764
No 499
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.84 E-value=0.3 Score=43.86 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=18.3
Q ss_pred EEEEccCCChHHHHHHHHhh
Q 039283 214 VSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 214 v~I~G~~GiGKTtLA~~v~~ 233 (600)
+.|+|.+|+|||++|.++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~ 21 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIG 21 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHC
T ss_pred EEEECCCCCcHHHHHHHHHh
Confidence 68999999999999998875
No 500
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=86.81 E-value=0.34 Score=50.75 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.4
Q ss_pred eEEEEEccCCChHHHHHHHHhh
Q 039283 212 SVVSIKGLGGVGKTTLAQLVNK 233 (600)
Q Consensus 212 ~vv~I~G~~GiGKTtLA~~v~~ 233 (600)
.+++|+|+.|+|||||.+.+..
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 7999999999999999998875
Done!