Query 039285
Match_columns 813
No_of_seqs 369 out of 2314
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 08:10:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03138 Protein TOC75; Provis 100.0 7E-118 1E-122 1025.8 76.0 791 1-813 1-796 (796)
2 TIGR00992 3a0901s03IAP75 chlor 100.0 1E-84 2.2E-89 773.4 69.3 647 116-813 22-718 (718)
3 COG4775 Outer membrane protein 100.0 6.6E-71 1.4E-75 650.0 61.4 586 125-813 120-766 (766)
4 PRK11067 outer membrane protei 100.0 3E-63 6.5E-68 607.2 65.8 592 125-813 123-803 (803)
5 TIGR03303 OM_YaeT outer membra 100.0 1.8E-59 4E-64 570.4 65.1 581 126-813 99-741 (741)
6 COG0729 Outer membrane protein 100.0 1.6E-36 3.4E-41 349.1 40.4 420 309-813 142-594 (594)
7 PF01103 Bac_surface_Ag: Surfa 100.0 1.1E-30 2.5E-35 285.3 35.8 294 481-813 1-323 (323)
8 COG2831 FhaC Hemolysin activat 100.0 1.6E-26 3.4E-31 266.9 43.7 436 302-813 91-554 (554)
9 KOG2602 Predicted cell surface 99.9 1.8E-26 3.9E-31 246.7 16.9 377 376-813 43-457 (457)
10 PRK11067 outer membrane protei 99.9 4.2E-21 9.1E-26 235.7 29.6 261 139-447 63-348 (803)
11 TIGR03303 OM_YaeT outer membra 99.9 3.3E-19 7.1E-24 217.5 43.1 269 127-447 31-323 (741)
12 COG4775 Outer membrane protein 99.9 4.8E-20 1E-24 218.9 24.3 264 139-449 63-347 (766)
13 PF03865 ShlB: Haemolysin secr 99.8 1.8E-17 3.9E-22 186.8 34.4 319 387-760 9-346 (404)
14 PLN03138 Protein TOC75; Provis 99.3 1.5E-10 3.3E-15 136.0 20.2 169 145-361 196-428 (796)
15 PF07244 Surf_Ag_VNR: Surface 98.6 1.1E-07 2.5E-12 81.3 8.0 72 259-359 4-78 (78)
16 PF07244 Surf_Ag_VNR: Surface 98.5 1E-06 2.2E-11 75.3 9.4 71 165-242 1-77 (78)
17 TIGR00992 3a0901s03IAP75 chlor 98.3 4.9E-06 1.1E-10 100.5 14.6 188 126-363 137-352 (718)
18 PF08479 POTRA_2: POTRA domain 98.2 4.3E-06 9.4E-11 71.4 7.8 58 301-359 18-76 (76)
19 COG2831 FhaC Hemolysin activat 96.4 0.068 1.5E-06 63.0 15.6 153 163-367 71-228 (554)
20 PF08479 POTRA_2: POTRA domain 93.3 0.64 1.4E-05 39.4 8.9 61 166-230 2-67 (76)
21 COG0729 Outer membrane protein 92.9 0.28 6.2E-06 58.0 8.2 82 155-242 190-274 (594)
22 KOG3915 Transcription regulato 86.0 1.1 2.4E-05 49.6 5.2 8 115-122 85-92 (641)
23 PF05918 API5: Apoptosis inhib 83.8 0.33 7.2E-06 56.5 0.0 23 101-123 534-556 (556)
24 PF08478 POTRA_1: POTRA domain 79.2 4.7 0.0001 33.1 5.4 66 166-239 2-67 (69)
25 PF08478 POTRA_1: POTRA domain 59.7 25 0.00053 28.7 5.6 60 375-442 7-68 (69)
26 KOG3973 Uncharacterized conser 58.5 7.3 0.00016 42.0 2.6 10 115-124 376-385 (465)
27 PRK05529 cell division protein 58.0 34 0.00074 36.3 7.6 71 162-240 58-128 (255)
28 COG1512 Beta-propeller domains 55.7 9.5 0.00021 40.7 2.9 7 117-123 265-271 (271)
29 PF05918 API5: Apoptosis inhib 54.6 4.1 8.9E-05 47.7 0.0 19 107-125 536-554 (556)
30 KOG0921 Dosage compensation co 50.2 11 0.00024 45.9 2.6 7 18-24 1164-1170(1282)
31 KOG3915 Transcription regulato 50.0 21 0.00045 40.0 4.4 8 166-173 186-193 (641)
32 PTZ00146 fibrillarin; Provisio 39.2 24 0.00052 38.2 2.9 8 408-415 256-263 (293)
33 PF11854 DUF3374: Protein of u 38.9 3.3E+02 0.0071 33.1 12.6 65 523-587 536-600 (637)
34 PRK05529 cell division protein 32.8 1E+02 0.0022 32.7 6.4 63 375-445 67-131 (255)
35 KOG3074 Transcriptional regula 31.3 32 0.0007 35.3 2.1 19 320-338 154-172 (263)
36 KOG0815 60S acidic ribosomal p 28.8 49 0.0011 33.8 2.9 47 158-206 146-206 (245)
37 COG1589 FtsQ Cell division sep 28.5 1.5E+02 0.0032 31.7 6.9 68 165-240 60-127 (269)
38 PF10082 DUF2320: Uncharacteri 25.9 9.3E+02 0.02 26.6 16.8 29 555-583 331-359 (381)
39 KOG3074 Transcriptional regula 23.5 54 0.0012 33.8 2.1 9 165-173 50-58 (263)
40 KOG2602 Predicted cell surface 23.0 2E+02 0.0043 32.8 6.5 73 166-242 37-115 (457)
No 1
>PLN03138 Protein TOC75; Provisional
Probab=100.00 E-value=6.9e-118 Score=1025.82 Aligned_cols=791 Identities=79% Similarity=1.261 Sum_probs=688.1
Q ss_pred CCCcCCCCCcccCCCCCCCccccccCCC--CCCCCCCCCCCccceeccCCCCCCCCCCCCCCCCCccccccccccccccc
Q 039285 1 MPSFAAPTNLLPSTTTPSTFSRRKFSST--PSPSSVNPRASSTSIQCNSSNPLNPSRPSSLQNPNSKRNKQHILKSLTKP 78 (813)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (813)
|.++.+.....++...++..+.....++ ..+++..+|++ ++||+++.+ .. +..++ +..++.+..+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----~~-~~~~~----~~~~~~~~~~~~ 69 (796)
T PLN03138 1 GRSSSTMVSAAASTSLSSSRPQLSSFSSRSPQSATRSPRAS--SIKCSASAS----AS-SSATS----SSASLVANGAVA 69 (796)
T ss_pred CCcccccceeccCCCccCCCccccccccccccccCCCCCCC--ccccccccc----cc-ccCCc----cccccccCcccc
Confidence 4566666666666655444333332222 25566688888 899998876 22 22222 222222332222
Q ss_pred ceeccccceeEEEeeecccCCCCCC---CCCCCCCCCCCCCCCCcccceEeeccchhhccccccccccccCCCCceeeEE
Q 039285 79 LAVASFASATIFIRLTPVLGGGSGG---DGFGGGGGGGGDGFGGGGFWRKVFGTELAIADEDNESQDWDAHGLPANIAVQ 155 (813)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 155 (813)
+ ++...+.++||++| ||||+||||||+|+|++|||.++|+|+++++|+. ...+||.|||++||+|+
T Consensus 70 ---------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 138 (796)
T PLN03138 70 ---------L-LSASAISGGGGGGGGGFGGFGGGGGGGGGGGGGWRFWLRLFAPADAHADEE-QSGDWDSHGLPVNITVP 138 (796)
T ss_pred ---------c-cccccccccCcCCCCCcCCCCCCCCCCCCCCcccchhhhhcChhhhhcCCc-cCCCCccccCcccceEe
Confidence 1 11212223333333 4444444444445556689999999999999966 79999999999999999
Q ss_pred eeeecCccceEEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHHHHcCCcceEEEEEEEcCCCceEEE
Q 039285 156 LSKLSGFRKYKLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETLATCGMFEKVDMEAKTKPDGTLGLT 235 (813)
Q Consensus 156 ~~~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~~~Gyf~~V~~~~~~~~d~~~~v~ 235 (813)
+.++++-++++|++|.|.|.+.+.....|+.|.+.|.+++|..|++.+|++|+++|+++|||++|+++++..+|+.+.|+
T Consensus 139 ~~~~~~~~~~~vs~v~~~~~~~~~~~~~e~~l~~~i~~kpG~v~trsqLq~dv~~I~~tG~F~~V~~~v~~~~dg~v~V~ 218 (796)
T PLN03138 139 LSKLSGFKRYKVSEIEFFDRRRNTTVGTEDSFFEMVTLRPGGVYTKAQLQKELETLASCGMFEKVDLEGKTKPDGTLGLT 218 (796)
T ss_pred chhcCCcceEEEEEEEEeccccCCCcchHHHHHHHHhcCCCCccCHHHHHHHHHHHHhcCCceEEEEEEEeCCCCeEEEE
Confidence 99999999999999999998777778899999999999999999999999999999999999999999888888866777
Q ss_pred EEEEeeecccceeEEEeeccccccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCee
Q 039285 236 ISFLESTWQSAERIRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKV 315 (813)
Q Consensus 236 i~~~v~e~p~g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~ 315 (813)
|+|.+.+++.++++++||||+|.+...|+||+.+++++|++.|..+++.|++|++.+.+|+||.+.++++|.+++..++|
T Consensus 219 ~~i~Eg~~~~I~~I~~i~~~~~~~~~~~~GN~~fs~~el~~~~~~~e~~~~~~~~~a~~~~Lp~~v~~e~f~~~~~~gkl 298 (796)
T PLN03138 219 ISFTESTWQSADSFRCINVGLMSQSKPIEMDEDMTDKEKMEYYRSQEKDYKRRIRKARPCLLPKSVRREVLGMLRDQGKV 298 (796)
T ss_pred EEEEeCCceeeeeeeecccccccccceeeCCcccCHHHHHHHhhccccccccccccccccccchHHHHHHHhhhccCCcC
Confidence 88887788899999999999999998899999999999999999999999999999999999999999999987666679
Q ss_pred cHHHHHHHHHHHHHHHHHCCCceeEEeeeeeecCeEEEEEEeeceeeeeEEeeeccCCceeecCccHHHHHHhccccCCC
Q 039285 316 SARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTREVVCEVVEGDITQLVVQFQDKLGNVVEGNTQLAVVKRELPKQLRQ 395 (813)
Q Consensus 316 ~~~~l~~~~~~I~~~Y~~~GY~~a~V~~~~~~~~~~i~i~I~EG~~~~i~i~~i~~~G~~i~Gnt~~~vI~r~l~~~l~~ 395 (813)
+.++|++++++|+++|.++||.+++|.+...++++.|+|+|.||++.+|+|++++++|++|+|||+|++|+|+|+..++|
T Consensus 299 N~e~Lq~die~I~~~Y~d~GYafa~V~~~~~id~g~Vtl~V~EG~i~~I~V~~~drig~~i~GNTrD~VIRREL~~~lke 378 (796)
T PLN03138 299 SARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTNEVVCEVVEGDITKVVIQFQDKLGNVVEGNTQLPIIDRELPKQLRQ 378 (796)
T ss_pred CHHHHHHHHHHHHHHHHhCCCceEEEecccccCCceEEEEEecccEEEEEEEecccccccccCCccCeEEeeecccccCC
Confidence 99999999999999999999999999988777888999999999999999999999988999999999999999611599
Q ss_pred CCccChHHHHHHHHHHhcCCCceeeEeeecCCCCCCCeEEEEEEEEEccCceEEEeEEEeecCCCCCCCCcccCCCeEEE
Q 039285 396 GNVFNIEAGKQALRNINSLSLFSNIEVNPRPDEKNEGGIIVEIKLKELDQKSAEVSAEWSLVPGRGGRPTFASLQPGGTV 475 (813)
Q Consensus 396 G~~yn~~~l~~~~~~L~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E~~~~~~~lg~g~s~~~G~~G~st~~~~~~~~~~ 475 (813)
|++||..++++++++|+++|||++|++++.|....++.++|+|+|+|.++.+.+++++|+...|..+.++..+.++.+++
T Consensus 379 Gd~fN~~~l~~slqRL~~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE~e~~t~~ls~g~g~~~G~g~~Psl~S~g~~Gtv 458 (796)
T PLN03138 379 GHIFNIEAGKQALRNINSLALFSNIEVNPRPDEKNEGGIVVEIKLKELEPKSAEVSTEWSIVPGRGGRPTLASIQPGGTV 458 (796)
T ss_pred CcccCHHHHHHHHHHHHhCCCCceeEEEeccCCCCCCeEEEEEEEEEccCCceeEecccccccccCCCCccccccceeEE
Confidence 99999999999999999999999999999987655689999999999999999999999887776667777777889999
Q ss_pred EEeeecccCCcceEEEEEEeecccCCCccceEEEEEEeccccCCCCCCcceEEEEEeeccccCccccCCCCCCcCCceeE
Q 039285 476 SFEHRNLQGLNRSILGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWV 555 (813)
Q Consensus 476 s~~~~Nl~G~G~~l~~~~~~s~~~~~~~~~~~~lsy~~P~l~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 555 (813)
+|+|+||+|+|++|.++++.++++.++++..|+++|++||+.+.++|.++++.+++|++++.+.+|+.++.+.+++..|.
T Consensus 459 s~~~~NL~G~g~~L~~~v~~s~~~~g~~d~~f~lsytdPWi~g~~d~~rts~~~~~f~~r~~s~vf~~~~~~~~~~~~~~ 538 (796)
T PLN03138 459 SFEHRNIQGLNRSILGSVTSSNLLNPQDDLSFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPPIWV 538 (796)
T ss_pred EEeccccccccceEEEEEEeecccCCccceEEEEEeecccccCCCCcccccEEEEEEecCcCCceeeCCCCcccCCcceE
Confidence 99999999999999999998877778899999999999999875557779999999999998888988766556667789
Q ss_pred eeeeeEEEEeEecccCceEEEEEEEEEEEeecCCCCcCCCCccccCCCCcCCCCCCccccCCCcceeEEEEEEEEEeCCC
Q 039285 556 DRAGLKANITENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTK 635 (813)
Q Consensus 556 ~~~G~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~g~~~~~~l~~~~t~D~rD 635 (813)
.|.|+.+.++++|++++++++++.++++.++|+.+++++.+.+.+|.+.++++++|+++|+.+.|++..+++.++||++|
T Consensus 539 ~R~G~~~~~~rp~~~~~~~s~g~~~q~v~~~d~~g~~~~~~~~~~~~~~~~~~g~plT~S~~g~D~l~~~~~~~trd~~~ 618 (796)
T PLN03138 539 DRAGFKANITENFTRQSKFTYGLVVEEITTRDETSHICTHGQRVLPSGGLSADGPPTTLSGTGIDRMAFLQANITRDNTK 618 (796)
T ss_pred eecccceEeecccCCCCceEEEEEEEEEEeecCCCCccccccccccccccccCCCceeeccCCcchhhheeeeeEeccCC
Confidence 99999999999999988899999999999999999888877788888778889999999999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEecccCCCCCcceEEEEEEEEEEEEcccccccCCCCCCcEEEEEEEeeeeecCCCcccccccCCC
Q 039285 636 FVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGP 715 (813)
Q Consensus 636 ~~~~Pt~G~~~~~~~e~~~~lg~d~~~f~k~~~~~~~y~~l~~~~~~~~~~~~~vl~~r~~~G~~~g~lp~~erF~lGG~ 715 (813)
++..||.|.++.+++||++++|.++.+|+|+.+++++|+|+...+.+.+++.+.+|++++++|++.|+||+||+|.|||.
T Consensus 619 ~~~~pt~G~~~~~~~EQ~lpvg~~~~~fNR~~~~~s~fipv~~~~~~~~~~~Pq~la~~~~aG~~~GdLPpYEAF~LGG~ 698 (796)
T PLN03138 619 FVNGAVVGDRHIFQVDQGLGIGSKFPFFNRHQLTVTKFIQLNKVEKGAGKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGP 698 (796)
T ss_pred CCCCCCccceEEEEeeeeccccCCCCceEEEEEEEEEEEeeccccccccCCCCcEEEEEEeccceecCCCcHHhcccCCC
Confidence 99999999999999999999999999999999999999999644333333457999999999999999999999999999
Q ss_pred CccccccCCccCccceeeEEeEEEEEEecceeEEEEEeecccCCCCCCCCCCCccccccCCceeeeeEEEEEeeEEEEEE
Q 039285 716 YSVRGYNMGELGAARNILELGAEIRIPVKNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAKLGLVRAEYA 795 (813)
Q Consensus 716 ~svRGy~~~~ig~G~~~~~~s~Elr~pl~~~~~~~F~D~G~vw~~~~~~~~~~~~~~~~~~~~~s~G~GlrlGpirld~a 795 (813)
+|||||.++++|.|++++++++||||||..+.+++|+|+|+.|++..+++++|..++++++..+|||+|+|+||||+|||
T Consensus 699 nSVRGY~eG~lg~gRs~l~asaEyRfPi~~~~g~~F~D~GsdLgS~~~V~G~P~~~r~kpG~G~syG~GvrlGpiR~dYa 778 (796)
T PLN03138 699 YSVRGYNMGELGAARNILEVAAELRIPVRNTHVYAFAEHGTDLGSSKDVKGNPTEFFRRAGHGSSYGVGVKLGLVRAEYA 778 (796)
T ss_pred CcccCcccCcccccceeEEEEEEEEeeeccceEEEEEEeccccCCCCCCCCCchhhccCCCCCcccceeeEecceeEEEe
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCeEEEEEeccCC
Q 039285 796 VDHNTGTGALFFRFGERY 813 (813)
Q Consensus 796 ~~~~~~~~~f~F~iG~~F 813 (813)
++++.++++|||+||.+|
T Consensus 779 ~~~~~G~~r~hfg~GerF 796 (796)
T PLN03138 779 VDHNAGTGAIFFRFGERF 796 (796)
T ss_pred ecCCCCCceEEEeccccC
Confidence 998778999999999998
No 2
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=100.00 E-value=1e-84 Score=773.38 Aligned_cols=647 Identities=68% Similarity=1.059 Sum_probs=531.1
Q ss_pred CCCCcccceEeeccchhhccccccccccccCCCCceeeEEeeeecCccceEEEEEEEEeccCCccc--------------
Q 039285 116 GFGGGGFWRKVFGTELAIADEDNESQDWDAHGLPANIAVQLSKLSGFRKYKLSEILFFDRQRGATV-------------- 181 (813)
Q Consensus 116 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~e~~~~~I~~I~f~G~~~g~~~-------------- 181 (813)
-+++|+||.++|+|+++++|+. +..+||.||++++|.+++.++.+.++++|++|.|...+.....
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (718)
T TIGR00992 22 AGAHGNFWAQVASPVAAVADEN-LSADWDSHNLPAHIEVQLPLLSGFKKYKESDIVFFDRTEETTGVTEDSFEEMVSFTP 100 (718)
T ss_pred cccccchhhhhccchhhhhccc-cCCcccccCCccCcccCcccccccceeeeeeeeeehhccccccCCCCChhhccccCC
Confidence 3678999999999999999966 9999999999999999999999999999999999874421111
Q ss_pred --------------------CChhhHhhhcccCCCCcccHHHHHHHHHHHHHcCCcceEEEEEEEcCCCceEEEEEEEee
Q 039285 182 --------------------GTEDSFFEMVSLRPGGVYTRTQLLKELETLATCGMFEKVDMEAKTKPDGTLGLTISFLES 241 (813)
Q Consensus 182 --------------------~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~~~Gyf~~V~~~~~~~~d~~~~v~i~~~v~ 241 (813)
..|..+++.|.+++|..+++.+|++|+++|+++|||.+|.+..+..+++ |.|+|.|.
T Consensus 101 ~~~~~~~~l~~e~~~~~~~~~~~~~~~~~~~~~~G~~~t~~~~~~d~~~i~~tG~F~~V~~~~~~~~~G---v~v~~~V~ 177 (718)
T TIGR00992 101 GGVYTKAQLQKELEVLATCGMFEKVDYEGKTTQDGRLGTTISFAESVWAIADRFRCINVGLMPQSKPLE---MDVDMEVK 177 (718)
T ss_pred CCccchhheeeeeeeecCcHHHHHHHhhccccCCCCcccHHHHHHHHHHHHHcEEeeeeEEeeccCCCc---eEEEEEEe
Confidence 1234445567888999999999999999999999999999988777764 88999999
Q ss_pred eccccee-EEEeeccccccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCC-CeecHHH
Q 039285 242 TWQSAER-IRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDH-GKVSARL 319 (813)
Q Consensus 242 e~p~g~~-~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g-~~~~~~~ 319 (813)
|+|+..+ + .|+|+..+. ..++|++|.+.++++++ .+.| ++++...
T Consensus 178 enP~~~~~v------------~~~g~~~~~--------------------~~~~~~lp~~~l~e~~~-~~~G~~~ln~~~ 224 (718)
T TIGR00992 178 EKPEFTRRL------------EIRYKRRIA--------------------EARPCLLPQEVVDETFG-MLYGQGIVSARL 224 (718)
T ss_pred cCCEEEEEE------------EEeeccccc--------------------ccccccCCHHHHHHHhc-cccCCeecCHHH
Confidence 8888765 4 467765432 24678899999999998 5778 9999999
Q ss_pred HHHHHHHHHHHHHHCCCceeEEeeeeeecCeEEEEEEeeceeeeeEEeeeccCCceeecCccHHHHHHhccccCCCCCcc
Q 039285 320 LQRIRDRVQKWYHDEGYACAQVVNFGNLNTREVVCEVVEGDITQLVVQFQDKLGNVVEGNTQLAVVKRELPKQLRQGNVF 399 (813)
Q Consensus 320 l~~~~~~I~~~Y~~~GY~~a~V~~~~~~~~~~i~i~I~EG~~~~i~i~~i~~~G~~i~Gnt~~~vI~r~l~~~l~~G~~y 399 (813)
|++++++|+++|+++||++|+|.+..+.+++.|+|.|.||++..|.|++++..|+.+.|+|++.+|+|+++.++++|++|
T Consensus 225 L~~~~~~I~~~Y~~~GY~~A~V~~~~~~~~~~V~l~V~EG~i~~I~V~~i~~~Gn~~~G~T~~~vI~Rel~~~lk~G~~f 304 (718)
T TIGR00992 225 LQEIRDRVQEWYHNEGYACAQVVNFGNLNTDEVVCEVVEGDITNLQIQFFDKLGNVVEGNTRDPVVTRELPKQLKPGDVF 304 (718)
T ss_pred HHHHHHHHHHHHHHCCceeEEEeccCcCCCCEEEEEEeccceeEEEEEEecccCccccCccchHHHHHHHHhccCCCCcC
Confidence 99999999999999999999997665555558999999999999988888888888889999999999997557999999
Q ss_pred ChHHHHHHHHHHhcCCCceeeEeeecCCCCCCCeEEEEEEEEEccCceEEEeEEEeecCCCCC---CCCcccCCCeEEEE
Q 039285 400 NIEAGKQALRNINSLSLFSNIEVNPRPDEKNEGGIIVEIKLKELDQKSAEVSAEWSLVPGRGG---RPTFASLQPGGTVS 476 (813)
Q Consensus 400 n~~~l~~~~~~L~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E~~~~~~~lg~g~s~~~G~~G---~st~~~~~~~~~~s 476 (813)
|..+|++++++|+++++|++|++.+.|...+++.++|+|+|+|+++++++++..|+...| .| |++..++ .+.++
T Consensus 305 n~~~Le~~~~rL~~lg~F~~V~V~~~p~~~~~g~v~V~V~V~E~~~~s~~~~~~~s~~~G-~Gg~~~ss~~G~--~g~i~ 381 (718)
T TIGR00992 305 NIEAGKTALQNINSLGLFSNIEVNPRPDEMNEGEIIVEIKLKELEQKSAEVSTEWSIVPG-RGGRPTLASSQP--GGTIT 381 (718)
T ss_pred CHHHHHHHHHHHHcCCCcccceeeccCCCCCCCeEEEEEEEEECCCCceeeecccccccc-CCCcccccccce--eEEee
Confidence 999999999999999999999999988764568999999999999998888888877655 44 7766655 99999
Q ss_pred EeeecccCCcceEEEEEEeecccCCCccceEEEEEEeccccCCCCCCcceEEEEEeeccccCccccCCCCCCcCCceeEe
Q 039285 477 FEHRNLQGLNRSILGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVD 556 (813)
Q Consensus 477 ~~~~Nl~G~G~~l~~~~~~s~~~~~~~~~~~~lsy~~P~l~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~ 556 (813)
|+++||||.|++|.++++.++....+..+.+.++|++||+.+..+|.+.++++++|+++..+..|+.+....+...|+..
T Consensus 382 ~~~rNl~G~g~~l~~~~~~s~~~~~~~~~~~~lsy~~P~i~~~~~p~~~s~~~~~f~~~~~~~~~~~~~~~~~~~~y~~~ 461 (718)
T TIGR00992 382 FEHRNLQGLNRSLGGSVTTSNFLNPQDDLLFKVEYTHPYLDGVDNPRNRTYTASCFNSRKLSPVFTGGPGVNEVPSIWVD 461 (718)
T ss_pred EEeccCcccCcEEEEEEEeccccCCCcceEEEEEEecCccCCCCCCccceEEEEEEEeccccccccCCcccccCCCceEE
Confidence 99999999999999999874333346889999999999998722255788999999987755555544332334578999
Q ss_pred eeeeEEEEeEecccCceEEEEEEEE------EEEeecCCCCcCCCCccccCCCCcCCCCCCccccCCCcceeEEEEEEEE
Q 039285 557 RAGLKANITENFTRQSKFTYGLVME------EITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNIT 630 (813)
Q Consensus 557 ~~G~~~~l~~~~~~~~~~~~g~~~~------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~g~~~~~~l~~~~t 630 (813)
++|+++++++++++++.+++++.+. +....+..+... .++..+++.+.+.+++..+.+.+..+.++++
T Consensus 462 r~G~~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------~~~~~~~~~g~~~t~s~~~~~~l~~l~~~~t 535 (718)
T TIGR00992 462 RAGVKANITENFARQSKFTYGLVMEEIFTRDESRHINANGQRS------LPSGPISADGPPTTLSGTGVDRMAFLQANIT 535 (718)
T ss_pred EEEEEEEEeeccCcccccccCeEEEEEeeeeeeeeccccCccc------cccccccccCCcceecCCCccceEEEEEEEE
Confidence 9999999999999876665555433 222212111110 0000012345566666666677889999999
Q ss_pred EeCCCCCCCCCCccEEEEEEEecccCCCCCcceEEEEEEEEEEEEcccccccCCCCCCcEEEEEEEeeeeecCCCccccc
Q 039285 631 RDNTKFVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDLPSYDAF 710 (813)
Q Consensus 631 ~D~rD~~~~Pt~G~~~~~~~e~~~~lg~d~~~f~k~~~~~~~y~~l~~~~~~~~~~~~~vl~~r~~~G~~~g~lp~~erF 710 (813)
||+||++++||+|+++.++++++.+++++...|.|+.+++++|+||.+...+.+++.+++|++|+++|++.+++|++++|
T Consensus 536 ~D~rDn~l~Pt~G~~~~~~~e~~~~~g~~~~~f~r~~~~~~~y~pl~~~~~~~~~~~~~vla~r~~~G~~~gdlP~~e~F 615 (718)
T TIGR00992 536 RDNTNFVNGPTVGSRVRFQVDQGLGVGSGFPFFNRHQLTYTKFIQLNWVELGAGKSPPPVLVLHGHYGGCVGDLPSYDAF 615 (718)
T ss_pred EecCCCCCCCCcccEEEEEEEeccCcCCCCceEEEEEEEEEEEEeccccccccccCCCcEEEEEEEeeeEcCCCCchhce
Confidence 99999999999999999999998778888855799999999999996422111222368999999999999999999999
Q ss_pred ccCCCCccccccCCccCccceeeEEeEEEEEEecc-eeEEEEEeecccCCCCCCCCCCCccccccCCceeeeeEEEE---
Q 039285 711 TLGGPYSVRGYNMGELGAARNILELGAEIRIPVKN-THVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAK--- 786 (813)
Q Consensus 711 ~lGG~~svRGy~~~~ig~G~~~~~~s~Elr~pl~~-~~~~~F~D~G~vw~~~~~~~~~~~~~~~~~~~~~s~G~Glr--- 786 (813)
++||.+|||||.++++|||+.|+++++||||||.+ + +++|+|+|++|++..++++++...++++++++|+|+|+|
T Consensus 616 ~lGG~~SVRGY~~~~lGpGr~~~~~s~E~r~Pi~~~~-g~~F~D~G~~~~s~~~~~g~~~~~~~~~~~~~s~GvGvR~~s 694 (718)
T TIGR00992 616 ILGGPYSVRGYNMGELGAARNIFEATAEIRIPIKATH-VYAFVEHGSDLGSSKDVKGNPTIVYRRPGQGSSYGAGVKLGL 694 (718)
T ss_pred ecCCCCcccCccCCcccccceeeEEEEEEEEEecCcc-EEEEEecccccCcccccCCCccccccCCCCccceeEEEEEec
Confidence 99999999999999999999999999999999974 6 999999999999866665555444456778999999999
Q ss_pred -EeeEEEEEEEecCCCCeEEEEEeccCC
Q 039285 787 -LGLVRAEYAVDHNTGTGALFFRFGERY 813 (813)
Q Consensus 787 -lGpirld~a~~~~~~~~~f~F~iG~~F 813 (813)
+||||||| ++++++|||+||++|
T Consensus 695 PiGPiRlD~----~~~~~rf~F~iG~~F 718 (718)
T TIGR00992 695 VRAEYAVDH----NEGTGAIFFRFGERF 718 (718)
T ss_pred CcccEEEEe----cCCCcEEEEeccccC
Confidence 79999999 356789999999998
No 3
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.6e-71 Score=649.99 Aligned_cols=586 Identities=22% Similarity=0.321 Sum_probs=474.7
Q ss_pred EeeccchhhccccccccccccCCC------------CceeeEEeeeecCccceEEEEEEEEeccCCcccCChhhHhhhcc
Q 039285 125 KVFGTELAIADEDNESQDWDAHGL------------PANIAVQLSKLSGFRKYKLSEILFFDRQRGATVGTEDSFFEMVS 192 (813)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~g~------------~~~~~~~~~~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~ 192 (813)
.+|..+...++.+.|++.|.++|. +.|++...+.|+||++.+|++|.|.|+ +..++..|++.+.
T Consensus 120 ~~~~~~~l~~~~~~l~e~Y~~~G~~~~~v~~~~~~~~~~~v~v~f~i~eG~~~~i~~I~~~Gn----~~~s~~~l~~~~~ 195 (766)
T COG4775 120 EVLNRAKLEADVEALKEAYLSRGYYSVKVTYKVTPLPRNRVDVVFVINEGPSAKIKQINFEGN----TAFSDSDLESVVQ 195 (766)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCeecceeEEEEEECCCCeEEEEEEeCCCCccceeeeEEecc----ccccchhhhhhee
Confidence 478999999999999999999984 346778888999999999999999965 4555555555554
Q ss_pred cCC---------CCcccHHHHHHHHHHHHH----cCCcc-eE-EEEEEEcCCCceEEEEEEEeeecccceeEEEeecccc
Q 039285 193 LRP---------GGVYTRTQLLKELETLAT----CGMFE-KV-DMEAKTKPDGTLGLTISFLESTWQSAERIRCINVGLM 257 (813)
Q Consensus 193 ~~~---------g~~~~~~~l~~d~~~L~~----~Gyf~-~V-~~~~~~~~d~~~~v~i~~~v~e~p~g~~~k~~~vg~~ 257 (813)
+++ .+.|++++++.|+++|.+ .||++ +| ++.+...++.. .+.|++.|+ ||++|++
T Consensus 196 ~k~~~~~~~~~~~~~y~~~~l~~D~e~lr~~Y~n~Gy~d~~v~s~~~~~~~~k~-~~~vt~~V~---EG~~y~~------ 265 (766)
T COG4775 196 TKESNIWGWLTRLDKYDPDKLEADLETLRSFYLNRGYADFRVSSTQVSLDPDKK-GVTVTYTVK---EGPQYKF------ 265 (766)
T ss_pred eccceeEEEEecccccChhhhhccHHHHHHHHHhCceEEEEEeeeeecccCCCc-cEEEEEEEc---cCCceEE------
Confidence 443 457999999999999854 99999 88 66666656654 799999997 6889998
Q ss_pred ccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCc
Q 039285 258 QQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYA 337 (813)
Q Consensus 258 ~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~ 337 (813)
.+|.|+||.....++| +++++ +++|++|+.++++++.++|+++|.+.||+
T Consensus 266 -~~i~i~g~~~~~~~el----------------------------~~~~~-~~~g~~fn~~~i~~~~~~I~~~~~~~GY~ 315 (766)
T COG4775 266 -GSVLIEGNLAGVSEEL----------------------------EKLLK-VKPGKLFNRKKIEDDADKIKERYARYGYA 315 (766)
T ss_pred -EEEEEEcCccCcHHHH----------------------------HHhhc-cCCCceEcHHHHHHHHHHHHHHHHhcCce
Confidence 4558999987765444 34444 78999999999999999999999999999
Q ss_pred eeEEeeeeeecCe----EEEEEEeeceeeeeEEeeeccCCceeecC--ccHHHHHHhccccCCCCCccChHHHHHHHHHH
Q 039285 338 CAQVVNFGNLNTR----EVVCEVVEGDITQLVVQFQDKLGNVVEGN--TQLAVVKRELPKQLRQGNVFNIEAGKQALRNI 411 (813)
Q Consensus 338 ~a~V~~~~~~~~~----~i~i~I~EG~~~~i~i~~i~~~G~~i~Gn--t~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L 411 (813)
+|+|.|....++. .|+++|++|++.+|+ ++ .|.|| |+|+||+|||. ++||++||..++++++++|
T Consensus 316 ~a~V~p~~~~n~~~~tv~v~~~V~~g~~~~V~-----~i--~i~gn~rT~D~VIrRE~~--~~eGd~fn~~~v~~~~~rL 386 (766)
T COG4775 316 FANVSPQPDANDENKTVDVVFRVDEGDRVYVR-----RI--RIRGNTRTKDYVIRREMR--LKEGDVFNRKLVQRGKRRL 386 (766)
T ss_pred eeEeeeecccCCCCcEEEEEEEEEcCCceeee-----ee--eecCCCccccHHhhhhhh--cCCcchhhHHHHHHHHHHH
Confidence 9999887765532 488999999987763 22 47788 68999999999 9999999999999999999
Q ss_pred hcCCCceeeEeeecCCCCCCCeEEEEEEEEEccCceEEEeEEEeecCCCCCCCCcccCCCeEEEEEeeecccCCcceEEE
Q 039285 412 NSLSLFSNIEVNPRPDEKNEGGIIVEIKLKELDQKSAEVSAEWSLVPGRGGRPTFASLQPGGTVSFEHRNLQGLNRSILG 491 (813)
Q Consensus 412 ~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E~~~~~~~lg~g~s~~~G~~G~st~~~~~~~~~~s~~~~Nl~G~G~~l~~ 491 (813)
+++|||++|+|.+.|.+.+ +.|||.|+|+|++++++.+|+||+... ++ .+.++++++||+|+|+.+++
T Consensus 387 ~~lgyF~~V~i~~~~~~~~-~~vdvvv~VkE~~Tgsi~~G~Gy~s~~---------gl--~~~~s~~e~N~~G~G~~~~~ 454 (766)
T COG4775 387 RRLGYFESVNIDTAPGSGS-DQVDVVVDVKERSTGSINFGLGYGSDS---------GL--SGFASLSERNFLGTGQSLSL 454 (766)
T ss_pred HhcCCceeeEEEeccCCCC-CeEEEEEEEEecCceeEEecccccCCC---------ce--EEEEEEEEeecCccccEEEE
Confidence 9999999999999998875 499999999999999999997776653 34 89999999999999999999
Q ss_pred EEEeecccCCCccceEEEEEEeccccCCCCCCcceEEEEEeeccccCccccCCCCCCcCCceeEeeeeeEEEEeEecccC
Q 039285 492 SVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQ 571 (813)
Q Consensus 492 ~~~~s~~~~~~~~~~~~lsy~~P~l~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~l~~~~~~~ 571 (813)
.++. +...+++.++|++||+++ .++++++++|+++.. .++.. .....|+..++|++++++++++++
T Consensus 455 ~~~~-----g~~~~~~~l~ft~P~f~~----~~~slg~~~f~~~~~--~~~~~---~~~~~y~~~~~G~~~~lg~pi~e~ 520 (766)
T COG4775 455 NANL-----GDKQTSYSLSFTDPYFLD----DRVSLGFNLFSNRYD--TFDAD---TANDSYRVKTYGGGVSLGRPITEN 520 (766)
T ss_pred EEEe-----ccceEEEEEEEecccccC----CCceeEEEeEeeeec--ccccc---cccccceEeeccceEEecccccCC
Confidence 9986 567999999999999987 689999999998753 11100 011368899999999999999999
Q ss_pred ceEEEEEEEEEEEeecCCCCcCCCCccccCCCCcCCCCCCcccc-CCCcceeEEEEEEEEEeCCCCCCCCCCccEEEEEE
Q 039285 572 SKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLS-GTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQV 650 (813)
Q Consensus 572 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s-~~g~~~~~~l~~~~t~D~rD~~~~Pt~G~~~~~~~ 650 (813)
+++.++|.+++.+.............. .... ..+....+.++++|+||+||++++||+|++++++.
T Consensus 521 ~~~~~~y~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~s~~~tyD~rD~~~~Pt~G~~~~~~~ 587 (766)
T COG4775 521 LSLGLGYGYEQNSLSLLNKSPPDEYAS-------------LGVKLQGGKSDLSSLSLGWTYDTRDNALFPTKGSYLSLTQ 587 (766)
T ss_pred ceEEEEEEEEEEEeeccccCccccccc-------------cccccccCcceeEEEEEeEEEcCCCCcCCCCCCeEEeeee
Confidence 999999998877653222110000000 0111 11224578899999999999999999999999988
Q ss_pred EecccCCCCCcceEEEEEEEEEEEEcccccccCCCCCCcEEEEEEEeeeee--c--CCCcccccccCCCCccccccCCcc
Q 039285 651 DQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCV--G--DLPSYDAFTLGGPYSVRGYNMGEL 726 (813)
Q Consensus 651 e~~~~lg~d~~~f~k~~~~~~~y~~l~~~~~~~~~~~~~vl~~r~~~G~~~--g--~lp~~erF~lGG~~svRGy~~~~i 726 (813)
+.++ +|+|.. |+|+++++++|+||.+. .+++.++..+|+.. + .+|++|+|++||.++||||+.+.+
T Consensus 588 e~~~-~Ggd~~-~~K~~~~~~~Y~~l~~~--------~~~l~~~~~~g~~~~~g~~~~p~~e~F~~GG~~svRGf~~~~i 657 (766)
T COG4775 588 EVAG-LGGDIK-YYKLELDGSKYYPLTDY--------IFTLSLRGEVGYGKGYGTKLLPIYERFYLGGSNSVRGFESGGL 657 (766)
T ss_pred EEec-cCCcce-EEEEEEEEEEEEEcccc--------cEEEEEEEEEEEeeccCCcccccccceeeCCCccccceecCCc
Confidence 8874 789998 59999999999999852 25889999998875 2 489999999999999999999999
Q ss_pred Cc---------cceeeEEeEEEEEEec---c--eeEEEEEeecccCCCCCCCCCCCcccccc-CCceeeeeEEEE----E
Q 039285 727 GA---------ARNILELGAEIRIPVK---N--THVYAFVEHGNDLGSSKDVKGNPTEVYRR-MGHGSSYGVGAK----L 787 (813)
Q Consensus 727 g~---------G~~~~~~s~Elr~pl~---~--~~~~~F~D~G~vw~~~~~~~~~~~~~~~~-~~~~~s~G~Glr----l 787 (813)
|| |+.++.+++|+|||++ . +++++|+|+|++|+...+ +......++. ..++.|+|+||+ +
T Consensus 658 gp~~~~~~~~GG~~~~~~S~El~fPl~~~~~~~~r~~lF~D~G~v~~~~~~-~~~~~~~~~~~~~~r~S~Gvgl~w~sP~ 736 (766)
T COG4775 658 GPKDGYTDALGGTSYFVASAELRFPLPKVIGSGVRGALFFDAGSVWNTGTD-PSTVRNFYGSGSELRASAGVGLRWASPL 736 (766)
T ss_pred CCccccccccCceEEEEEEEEEEeecCCCCCcceEEEEEEEcccccccCcc-cccccCCcCcCcceeEEeeeeEEEecCC
Confidence 98 8999999999999997 3 779999999999996411 1111111111 147899999999 7
Q ss_pred eeEEEEEEEec----CCCCeEEEEEeccCC
Q 039285 788 GLVRAEYAVDH----NTGTGALFFRFGERY 813 (813)
Q Consensus 788 Gpirld~a~~~----~~~~~~f~F~iG~~F 813 (813)
||||+|||++. .|..++|||+||..|
T Consensus 737 gPlr~d~a~pi~~~~~D~~q~F~F~iG~~F 766 (766)
T COG4775 737 GPLRFDYAFPIKKKEGDDTQRFQFGLGTRF 766 (766)
T ss_pred CcEEEEeecccccCCCCcceeEEEEccccC
Confidence 99999999732 244679999999988
No 4
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=100.00 E-value=3e-63 Score=607.25 Aligned_cols=592 Identities=17% Similarity=0.203 Sum_probs=460.9
Q ss_pred EeeccchhhccccccccccccCCCC-c-----------eeeEEeeeecCccceEEEEEEEEeccCCcccCChhhHhhhcc
Q 039285 125 KVFGTELAIADEDNESQDWDAHGLP-A-----------NIAVQLSKLSGFRKYKLSEILFFDRQRGATVGTEDSFFEMVS 192 (813)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~g~~-~-----------~~~~~~~~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~ 192 (813)
.+|++.+...++.+|++.|.++|++ + |.+..+..|.||++++|++|+|+| ++..+++.|++.|.
T Consensus 123 ~~~~~~~~~~~~~~l~~~Y~~~Gy~~~~V~~~~~~~~~~~v~l~~~i~EG~~~~I~~I~f~G----N~~~~~~~L~~~~~ 198 (803)
T PRK11067 123 EALDRTTLSNIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFTEGVSAKIQQINIVG----NHAFSTDELISRFQ 198 (803)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCccccEEEEEEEECCCCeEEEEEEEecCCeEEEEEEEEEC----CCCcCHHHHHHHhc
Confidence 6899999999999999999999976 3 334566789999999999999995 56788899999998
Q ss_pred cCCC---------CcccHHHHHHHHHHHHH----cCCcc-eEEEE-EEEcCCCceEEEEEEEeeecccceeEEEeecccc
Q 039285 193 LRPG---------GVYTRTQLLKELETLAT----CGMFE-KVDME-AKTKPDGTLGLTISFLESTWQSAERIRCINVGLM 257 (813)
Q Consensus 193 ~~~g---------~~~~~~~l~~d~~~L~~----~Gyf~-~V~~~-~~~~~d~~~~v~i~~~v~e~p~g~~~k~~~vg~~ 257 (813)
++++ +.|+++++++|+++|.+ +||++ +|... +...++.. .+.|+|.|+ ||++|++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~d~~~l~~~Y~~~Gy~~a~V~~~~~~~~~~~~-~v~i~~~I~---eG~~~~i------ 268 (803)
T PRK11067 199 LRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKK-GIYITVNIT---EGDQYKL------ 268 (803)
T ss_pred CCCCcchhhhccCCccCHHHHhhhHHHHHHHHHHCCCceEEecCcEEEEcCCCc-eEEEEEEEe---eCCcEEE------
Confidence 8875 78999999999988854 89999 98543 33334443 688999998 5778887
Q ss_pred ccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCc
Q 039285 258 QQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYA 337 (813)
Q Consensus 258 ~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~ 337 (813)
.+|.|+||..+++++|++ .+. +++|++|+...+++++++|+++|+++||+
T Consensus 269 -~~i~~~G~~~~~~~~l~~----------------------------~~~-~k~G~~~~~~~~~~~~~~i~~~~~~~GY~ 318 (803)
T PRK11067 269 -SGVQVSGNLAGHSAEIEK----------------------------LTK-IEPGELYNGTKVTKMEDDIKKLLGRYGYA 318 (803)
T ss_pred -EEEEEEecCCCCHHHHHH----------------------------hhc-CCCCceeCHHHHHHHHHHHHHHHHhCCCC
Confidence 456899998777655543 344 78999999999999999999999999999
Q ss_pred eeEEeeeeee--cCe--EEEEEEeeceeeeeEEeeeccCCceeecC--ccHHHHHHhccccCCCCCccChHHHHHHHHHH
Q 039285 338 CAQVVNFGNL--NTR--EVVCEVVEGDITQLVVQFQDKLGNVVEGN--TQLAVVKRELPKQLRQGNVFNIEAGKQALRNI 411 (813)
Q Consensus 338 ~a~V~~~~~~--~~~--~i~i~I~EG~~~~i~i~~i~~~G~~i~Gn--t~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L 411 (813)
+|+|.+.... +++ +|++.|+||+++++. ++ .|.|| +++++|+|++. +++|++|+.+++++++++|
T Consensus 319 ~a~v~~~~~~~~~~~~v~i~~~v~eG~~y~ig-----~I--~i~Gn~~~~~~~l~r~l~--~~~G~~~~~~~l~~~~~~L 389 (803)
T PRK11067 319 YPRVQTQPEINDADKTVKLHVNVDAGNRFYVR-----KI--RFEGNDTSKDAVLRREMR--QMEGAWLGSDLVEQGKERL 389 (803)
T ss_pred cceeeeccccCCCCCEEEEEEEEeeCCeEEEE-----EE--EEECCccccchhhhhhee--ccccccCCHHHHHHHHHHH
Confidence 9999654332 233 488999999988762 21 46787 46999999999 9999999999999999999
Q ss_pred hcCCCceeeEeeecCCCCCCCeEEEEEEEEEccCceEEEeEEEeecCCCCCCCCcccCCCeEEEEEeeecccCCcceEEE
Q 039285 412 NSLSLFSNIEVNPRPDEKNEGGIIVEIKLKELDQKSAEVSAEWSLVPGRGGRPTFASLQPGGTVSFEHRNLQGLNRSILG 491 (813)
Q Consensus 412 ~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E~~~~~~~lg~g~s~~~G~~G~st~~~~~~~~~~s~~~~Nl~G~G~~l~~ 491 (813)
+++|||+.|++.+.+.+..++.++|.+.|+|++++++++++||++.+| + .+.++++++|+||.|+++++
T Consensus 390 ~~~g~F~~V~~~~~~~~~~~~~v~l~v~v~e~~~~~~~~g~gy~s~~g---------~--~~~~~~~~~N~~G~G~~l~l 458 (803)
T PRK11067 390 NRLGFFETVDVDTQRVPGSPDQVDVVYKVKERNTGSFNFGVGYGTESG---------V--SFQAGVQQDNWLGTGNSVGI 458 (803)
T ss_pred HhcCCcccCccccccCCCCCCeEEEEEEEEEccCCcEEEEeeecCcCC---------E--EEEEEEEecccCCcCcEEEE
Confidence 999999999988876544457899999999999999999988776533 3 88999999999999999999
Q ss_pred EEEeecccCCCccceEEEEEEeccccCCCCCCcceEEEEEeeccccCccccCCCCCCcCCceeEeeeeeEEEEeEecccC
Q 039285 492 SVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQ 571 (813)
Q Consensus 492 ~~~~s~~~~~~~~~~~~lsy~~P~l~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~l~~~~~~~ 571 (813)
+++. +...+.+.++|++||+.. ..++++.+++++..... . .....|..+++|+++.+++++.++
T Consensus 459 ~~~~-----s~~~~~~~l~~~~P~~~~----~~~~~~~~~~~~~~~~~-----~--~~~~~y~~~~~g~~~~~~~~l~~~ 522 (803)
T PRK11067 459 NGTK-----NDYQTYAELSVTDPYFTV----DGVSLGGRIFYNDFEAD-----D--ADLSDYTNKSYGTDVTLGFPINEN 522 (803)
T ss_pred EEEe-----ccceEEEEEEEeCCcCcC----CCceEEEEEEEEecccc-----c--cccccceeeEEEEEEEEEEEecCc
Confidence 9986 356688999999999876 46777777666542110 0 123457788899999999999998
Q ss_pred ceEEEEEEEEEEEeecCCCCcCCCCccccCCCCcCCCCCCccc--cCCCcceeEEEEEEEEEeCCCCCCCCCCccEEEEE
Q 039285 572 SKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTL--SGTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQ 649 (813)
Q Consensus 572 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--s~~g~~~~~~l~~~~t~D~rD~~~~Pt~G~~~~~~ 649 (813)
+.+++++.+++....+...... ....+. ..+..... ..........+.++++||++|++++|++|+++.++
T Consensus 523 ~~~~~g~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~D~~~~Pt~G~~~~~~ 595 (803)
T PRK11067 523 NSLRAGLGYVHNSLSNMQPQVA--MWRYLY-----SMGENPSSDSDNSFKTDDFTFNYGWTYNNLDRGYFPTAGNRVNLT 595 (803)
T ss_pred eEEEEEEEEEEEEeecCCcchh--HHHHHH-----HcCCccccccccccceEEEEEEEEEEEecCcCCCCCCCCeeEEEE
Confidence 8999999888766533211100 000010 00000000 00001134577899999999999999999999998
Q ss_pred EEecccCCCCCcceEEEEEEEEEEEEcccccccCCCCCCcEEEEEEEeeeeec----CCCcccccccCCCCccccccCCc
Q 039285 650 VDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVG----DLPSYDAFTLGGPYSVRGYNMGE 725 (813)
Q Consensus 650 ~e~~~~lg~d~~~f~k~~~~~~~y~~l~~~~~~~~~~~~~vl~~r~~~G~~~g----~lp~~erF~lGG~~svRGy~~~~ 725 (813)
++.+. ++++.. |.|+.+++++|+|+.+. +.+++++++.+|++.+ ++|++++|++||.++||||.+++
T Consensus 596 ~~~~~-~gs~~~-f~k~~~~~~~y~~l~~~-------~~~~l~~r~~~G~~~~~~~~~lP~~erF~lGG~~svRGy~~~s 666 (803)
T PRK11067 596 GKVTI-PGSDNE-YYKVTLDTAQYVPLDDD-------HKWVLLGRGRLGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNT 666 (803)
T ss_pred EEEEe-ecccce-EEEEEEEEEEEEEecCC-------CcEEEEEEEEeeeeecCCCCCCChhheeccCCCCcCCcccCCC
Confidence 88764 578888 69999999999999731 2578999998887652 59999999999999999999887
Q ss_pred cCc----------------------------cceeeEEeEEEEEEec--------ceeEEEEEeecccCCCCCCCCC---
Q 039285 726 LGA----------------------------ARNILELGAEIRIPVK--------NTHVYAFVEHGNDLGSSKDVKG--- 766 (813)
Q Consensus 726 ig~----------------------------G~~~~~~s~Elr~pl~--------~~~~~~F~D~G~vw~~~~~~~~--- 766 (813)
+|| |+.++.+++|+|+|++ .+++++|+|+|++|+...+...
T Consensus 667 iGp~~~~~~~~~~~~~~~~~~~~~~~~~~iGG~~~~~~s~E~~~p~~~~~~~~~~~~~~~~F~D~G~~~~~~~~~~~~~~ 746 (803)
T PRK11067 667 IGPKAVYYPGQASNYTQDGAKDLCKSDDAVGGNAMAVASLELITPTPFISDKYANSVRTSFFWDMGTVWDTNWDNTAYTR 746 (803)
T ss_pred cCCccccccccccccccccccccCCCCCCCCCeEEEEEeEEEEEeCCccccccCCCEEEEEEEEeeecccCCcccccccc
Confidence 765 6789999999999973 4889999999999986321100
Q ss_pred ---CCccccccCCceeeeeEEEE----EeeEEEEEEEecC----CCCeEEEEEeccCC
Q 039285 767 ---NPTEVYRRMGHGSSYGVGAK----LGLVRAEYAVDHN----TGTGALFFRFGERY 813 (813)
Q Consensus 767 ---~~~~~~~~~~~~~s~G~Glr----lGpirld~a~~~~----~~~~~f~F~iG~~F 813 (813)
.+ ++.+...++.|+|+|+| +||||||||++.+ |..++|||+||..|
T Consensus 747 ~~~~~-~~~~~~~~r~s~G~G~r~~sPiGPirld~a~pl~~~~~d~~~~~~fsiG~~f 803 (803)
T PRK11067 747 AAGYP-DYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQFNIGKTW 803 (803)
T ss_pred ccccc-CcCCCCcEEEEEeEEEEEeCCCCCeEEEEEEeCCCCCCCceeEEEEeccccC
Confidence 00 01112358999999999 8999999999653 34689999999988
No 5
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=100.00 E-value=1.8e-59 Score=570.44 Aligned_cols=581 Identities=20% Similarity=0.276 Sum_probs=459.8
Q ss_pred eeccchhhccccccccccccCCCC-cee-----------eEEeeeecCccceEEEEEEEEeccCCcccCChhhHhhhccc
Q 039285 126 VFGTELAIADEDNESQDWDAHGLP-ANI-----------AVQLSKLSGFRKYKLSEILFFDRQRGATVGTEDSFFEMVSL 193 (813)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~g~~-~~~-----------~~~~~~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~ 193 (813)
.+++..+.+|+.+|++.|+++|++ +.| +..++.|+||++++|.+|.|.| +...+++.|.+.|.+
T Consensus 99 ~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~~~v~~~v~eg~~~~i~~i~~~G----n~~~~~~~l~~~~~~ 174 (741)
T TIGR03303 99 IFNRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRNRVDLEFNIKEGKKAKIKKINFVG----NKAFSDSELRDVFAL 174 (741)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCcceeEEEEEEEECCCCeEEEEEEEecCCEEEEEEEEEEC----CCcCCHHHHHHHHhc
Confidence 688999999999999999999987 333 2345789999999999999995 566777788888877
Q ss_pred CC---------CCcccHHHHHHHHHHHH----HcCCcc-eEE-EEEEEcCCCceEEEEEEEeeecccceeEEEeeccccc
Q 039285 194 RP---------GGVYTRTQLLKELETLA----TCGMFE-KVD-MEAKTKPDGTLGLTISFLESTWQSAERIRCINVGLMQ 258 (813)
Q Consensus 194 ~~---------g~~~~~~~l~~d~~~L~----~~Gyf~-~V~-~~~~~~~d~~~~v~i~~~v~e~p~g~~~k~~~vg~~~ 258 (813)
++ ++.|+++.+++|+++|. ++||++ +|+ .+++..++.. .+.|+|.|+ +|++|++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~~~~~~~~~-~~~i~~~v~---eG~~~~i------- 243 (741)
T TIGR03303 175 KESNFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKK-GVYITYNIK---EGEQYKF------- 243 (741)
T ss_pred CcchhHHhccCCCeECHHHHhhhHHHHHHHHHhCCcEEEEEcCCEEEECCCCC-EEEEEEEec---cCCCEEE-------
Confidence 76 48999999999998885 499999 885 4554434443 688999997 5778887
Q ss_pred cccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCce
Q 039285 259 QSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYAC 338 (813)
Q Consensus 259 ~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~~ 338 (813)
.+|.|+|+..+++++|. +++. +++|++|+.+.+++++++|.++|+++||++
T Consensus 244 ~~i~i~g~~~~~~~~l~----------------------------~~~~-~~~G~~~~~~~~~~~~~~l~~~y~~~Gy~~ 294 (741)
T TIGR03303 244 GEVTIEGDLIGPDEELK----------------------------KLLK-IKKGEVFNRSKVTKIVKAIKDLLGEKGYAF 294 (741)
T ss_pred EeEEEEeccCCcHHHHH----------------------------Hhhc-CCCCCeeCHHHHHHHHHHHHHHHHhcCCce
Confidence 45689999877665544 4444 788999999999999999999999999999
Q ss_pred eEEeeeeee--cC--eEEEEEEeeceeeeeEEeeeccCCceeecC--ccHHHHHHhccccCCCCCccChHHHHHHHHHHh
Q 039285 339 AQVVNFGNL--NT--REVVCEVVEGDITQLVVQFQDKLGNVVEGN--TQLAVVKRELPKQLRQGNVFNIEAGKQALRNIN 412 (813)
Q Consensus 339 a~V~~~~~~--~~--~~i~i~I~EG~~~~i~i~~i~~~G~~i~Gn--t~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L~ 412 (813)
|+|.+.... +. ..|++.|+||+++++.-. .|.|| |++++|++++. +++|++|+.+++++++++|+
T Consensus 295 ~~v~~~~~~~~~~~~v~v~~~v~eg~~~~i~~i-------~i~g~~~t~~~~i~~~~~--~~~G~~~~~~~l~~~~~~L~ 365 (741)
T TIGR03303 295 ANVNPRPQINDENKTVDLTFKVDPGKRVYVRRI-------NISGNTRTRDEVIRRELR--QLEGDWYSLSKIKRSKRRLE 365 (741)
T ss_pred eEEEecceECCCCCEEEEEEEEccCCeEEEEEE-------EEECCCccccceeehhhc--cCcccccCHHHHHHHHHHHH
Confidence 999765433 22 258899999998776211 46677 57999999999 99999999999999999999
Q ss_pred cCCCceeeEeeecCCCCCCCeEEEEEEEEEccCceEEEeEEEeecCCCCCCCCcccCCCeEEEEEeeecccCCcceEEEE
Q 039285 413 SLSLFSNIEVNPRPDEKNEGGIIVEIKLKELDQKSAEVSAEWSLVPGRGGRPTFASLQPGGTVSFEHRNLQGLNRSILGS 492 (813)
Q Consensus 413 ~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E~~~~~~~lg~g~s~~~G~~G~st~~~~~~~~~~s~~~~Nl~G~G~~l~~~ 492 (813)
++|+|+.|.+.+.+... ++.++|.+.|+|++++.+.++++|++. +++ .+.++++++|+||.|+++++.
T Consensus 366 ~lg~f~~v~~~~~~~~~-~~~~~v~i~v~e~~~~~~~~~~g~~~~---------~~~--~~~~~~~~~Nl~G~g~~l~~~ 433 (741)
T TIGR03303 366 RLGYFETVNIETVPVGS-PDQVDLNVKVKEQPTGSISFGVGYGSS---------SGL--SFNASISERNFLGTGNRLSLS 433 (741)
T ss_pred hCCCCceeeeeecCCCC-CCEEEEEEEEEEccccEEEEeeeecCC---------Cce--EEEEEEEEecccccccEEEEE
Confidence 99999999998887744 478999999999998889888877643 234 899999999999999999999
Q ss_pred EEeecccCCCccceEEEEEEeccccCCCCCCcceEEEEEeeccccCccccCCCCCCcCCceeEeeeeeEEEEeEecccCc
Q 039285 493 VTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQS 572 (813)
Q Consensus 493 ~~~s~~~~~~~~~~~~lsy~~P~l~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~l~~~~~~~~ 572 (813)
+.. +.....+.++|++||+.+ ..++++++++++..... . .....|...+.++.+.+++++.+++
T Consensus 434 ~~~-----~~~~~~~~~~~~~P~~~~----~~~~~~~~~~~~~~~~~---~----~~~~~y~~~~~g~~~~~~~~~~~~~ 497 (741)
T TIGR03303 434 ANK-----SSLSTSYSLSFTDPYFTD----DGVSLGFSIFYSETDRN---Y----KNFSDYKTKTYGGSINLGYPITEYL 497 (741)
T ss_pred EEe-----ccceEEEEEEEECCCCcC----CCeEEEEEEEEEEcccc---c----ccccCceeEEEEEEEEEEEEecCce
Confidence 986 345688999999999877 56778887766653211 0 0123467788899999999999998
Q ss_pred eEEEEEEEEEEEeecCCCCcCCCCccccCCCCcCCCCCCccccCCCcceeEEEEEEEEEeCCCCCCCCCCccEEEEEEEe
Q 039285 573 KFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQVDQ 652 (813)
Q Consensus 573 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~g~~~~~~l~~~~t~D~rD~~~~Pt~G~~~~~~~e~ 652 (813)
.+++++.+++....+......+. ...+ . ...+....+++.++++||+||++++|++|+++++.++.
T Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------~-~~~~~~~~~~~~~~~~~d~rD~~~~P~~G~~~~~~~~~ 563 (741)
T TIGR03303 498 RVSLGYGYEQNKIKNSSDSDSSA-SYFI------------K-EQGGKFIDSSLSYGWSYDTLDSGYFPTKGSIQRLSQEF 563 (741)
T ss_pred EEEEEEEEEEEEEecCCCcchhH-HHHH------------H-HhCCceEEEEEEEEEEEeCCcCCCCCCCCcEEEEEEEE
Confidence 88888888766553321110000 0000 0 00122346778899999999999999999999999887
Q ss_pred cccCCCCCcceEEEEEEEEEEEEcccccccCCCCCCcEEEEEEEeeeeec----CCCcccccccCCCCccccccCCccCc
Q 039285 653 GLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVG----DLPSYDAFTLGGPYSVRGYNMGELGA 728 (813)
Q Consensus 653 ~~~lg~d~~~f~k~~~~~~~y~~l~~~~~~~~~~~~~vl~~r~~~G~~~g----~lp~~erF~lGG~~svRGy~~~~ig~ 728 (813)
+. ++++.. |.|+.+++++|+||... ..++|++++.+|++.+ ++|++|+|++||+++||||..+++||
T Consensus 564 ~~-~g~~~~-f~k~~~~~~~y~~l~~~-------~~~~l~~~~~~g~~~~~~~~~~p~~e~f~lGG~~svRGy~~~~igp 634 (741)
T TIGR03303 564 AG-PGGDLK-YYKLTYDSEYYIPLSKE-------DDWVLSLRGRLGYGNGYGGKDLPFYERFYAGGIGSVRGFESNGIGP 634 (741)
T ss_pred ee-ecCCce-EEEEEEEEEEEEEcCCC-------CcEEEEEEEEeeEEEcCCCCccChhHeEecCCCCcCCCccCCCcCC
Confidence 63 577877 69999999999999731 1489999999998762 69999999999999999999999875
Q ss_pred -----------cceeeEEeEEEEEEec------ceeEEEEEeecccCCCCCCCCCCCccccccCCceeeeeEEEE----E
Q 039285 729 -----------ARNILELGAEIRIPVK------NTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAK----L 787 (813)
Q Consensus 729 -----------G~~~~~~s~Elr~pl~------~~~~~~F~D~G~vw~~~~~~~~~~~~~~~~~~~~~s~G~Glr----l 787 (813)
|+.++.+++|||+||+ .+++++|+|+|++|....+..... .....++.|+|+|+| +
T Consensus 635 ~~~~~~~~~~gG~~~~~~~~Elr~pl~~~~~~~~~~~~~F~D~G~v~~~~~~~~~~~---~~~~~~~~s~G~Glr~~tp~ 711 (741)
T TIGR03303 635 RDINDSGDSIGGNAMATANVELIFPLPFLPEDNGLRGSVFFDAGNVWGTDQKKEGDY---SDDSSLRASVGVGLRWISPM 711 (741)
T ss_pred CccCCCCCCCCceEEEEEEEEEEEcCCCCCccCcEEEEEEEEeeecccCCccccccc---CCCCcEEEEEEEEEEEECCc
Confidence 8999999999999994 378999999999998643100000 012347899999999 7
Q ss_pred eeEEEEEEEecC----CCCeEEEEEeccCC
Q 039285 788 GLVRAEYAVDHN----TGTGALFFRFGERY 813 (813)
Q Consensus 788 Gpirld~a~~~~----~~~~~f~F~iG~~F 813 (813)
||||||||++.. +..++|||+||..|
T Consensus 712 gpi~ld~a~~l~~~~~d~~~~~~f~~G~~F 741 (741)
T TIGR03303 712 GPLRFSYAKPLKKKKGDKTQSFQFSIGTTF 741 (741)
T ss_pred CcEEEEEEEeCCCCCCCceEEEEEeCcccC
Confidence 999999999653 34689999999998
No 6
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=1.6e-36 Score=349.07 Aligned_cols=420 Identities=19% Similarity=0.233 Sum_probs=306.0
Q ss_pred cCCCCeecHHHHHHHHHHHHHHHHHCCCceeEEeeee-ee----cCeEEEEEEeeceeeee-EEeeeccCCceeecCc--
Q 039285 309 LKDHGKVSARLLQRIRDRVQKWYHDEGYACAQVVNFG-NL----NTREVVCEVVEGDITQL-VVQFQDKLGNVVEGNT-- 380 (813)
Q Consensus 309 lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~~a~V~~~~-~~----~~~~i~i~I~EG~~~~i-~i~~i~~~G~~i~Gnt-- 380 (813)
.+.|++++...+++.+.+|.+...++||..|++.... .+ ++..+++.++-|+++.. .+ .++|..
T Consensus 142 ~~~G~~~~~~~~~n~k~~i~~~~~~~gy~~a~~~~~r~~v~~~~~~a~~~~~~dsG~~y~~g~v--------~~~g~~r~ 213 (594)
T COG0729 142 PKEGEDLNQGTYENAKSSIVRALLRKGYFLARFTKSRLVVDPATHTADVDLNYDSGRRYRFGPV--------TVEGSQRI 213 (594)
T ss_pred cccCCccccchhhhhHHHHHHHHHHcCcchhcccccccccccccceEEEEEeecccceEEeCcE--------EEccceec
Confidence 3579999999999999999999999999999985432 22 23457788888988765 33 344543
Q ss_pred cHHHHHHhccccCCCCCccChHHHHHHHHHHhcCCCceeeEeeecCCCC-CCCeEEEEEEEEEccCceEEEeEEEeecCC
Q 039285 381 QLAVVKRELPKQLRQGNVFNIEAGKQALRNINSLSLFSNIEVNPRPDEK-NEGGIIVEIKLKELDQKSAEVSAEWSLVPG 459 (813)
Q Consensus 381 ~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L~~~g~F~~V~i~~~~~~~-~~~~v~l~i~V~E~~~~~~~lg~g~s~~~G 459 (813)
.++.|++.++ +++|++|..++|.+..++|.++++|++|.|++...+. +...++|.|.|.|.+..++.+|+||+++.|
T Consensus 214 ~~~~~~~~~~--~~~G~~Y~~~~l~~~~~rl~~~~~F~sv~v~~~~~~~~~~~~~pv~v~~~~rk~~~~~lG~gyst~~G 291 (594)
T COG0729 214 DEEYLQNLVP--FKYGLPYDPEDLAELNQRLRQTGYFSSVVVQPADKQAGPDGLLPVKVSVSERKENTFELGVGYSTDVG 291 (594)
T ss_pred CHHHHhhccc--cCCCCcCCHHHHHHHHHHHhhcCceeeEEEecCccccCcCceeceEEEecccccceEEeeeEEecccc
Confidence 5888999999 9999999999999999999999999999998887633 334579999999999999999988887654
Q ss_pred CCCCCCcccCCCeEEEEEeeecccCCcceEEEEEEeecccCCCccceEEEEEEeccccCCCCCCcceEEEEEeeccccCc
Q 039285 460 RGGRPTFASLQPGGTVSFEHRNLQGLNRSILGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSP 539 (813)
Q Consensus 460 ~~G~st~~~~~~~~~~s~~~~Nl~G~G~~l~~~~~~s~~~~~~~~~~~~lsy~~P~l~~~~~p~~~s~~~~~~~~~~~~~ 539 (813)
. ++++.|.++|+|+++|++..+... ++-.+.....|..|.+.. |......++.+.....
T Consensus 292 ---------~--~~~~~w~~~~~~~~~~~l~~~~~i-----s~~~~~~~~~y~~p~~~~---~~~~~~~~~~~~~~~~-- 350 (594)
T COG0729 292 ---------A--GLEAGWEKRNLFGRGHSLRIESEI-----SAPLQTLEATYKAPLLFN---PLGQYNPVSAGFDRLD-- 350 (594)
T ss_pred ---------c--cceEEeeeecccCcceeEeeeeee-----ccchhcCceEEEeecccC---Cccceeccccccccch--
Confidence 3 899999999999999999977765 344555889999997765 2123333333222210
Q ss_pred cccCCCCCCcCCceeEeeeeeEEEEeEecccCce--EEEEEEEEEEEeecCCCCcCCCCccccCCCCcCCCCCCccccCC
Q 039285 540 VFTGGPGVDEVPAIWVDRAGLKANITENFTRQSK--FTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGT 617 (813)
Q Consensus 540 ~~~~~~~~~~~~~y~~~~~G~~~~l~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~ 617 (813)
.++. +...|. ...++.-.+.....+. +.+.+.+++....+.. +. .
T Consensus 351 ~~~t-----~~~~~~---~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~-------------------~~-~----- 397 (594)
T COG0729 351 LYDT-----ESDAYT---ESLSASRGWDASLGWQRSLALRFSYDNFRQGDIS-------------------GK-T----- 397 (594)
T ss_pred hhcc-----cccccc---ceeeeeehhccccCceeEEEEEEEcccccccccc-------------------CC-c-----
Confidence 0110 101111 1122222222222333 3333333331110100 00 0
Q ss_pred CcceeEEEEEEEEEeCCCCCCCCCCccEEEEEEEeccc-CCCCCcceEEEEEEEEEEEEcccccccCCCCCCcEEEEEEE
Q 039285 618 GIDRMAFLQGNITRDNTKFVNGAIVGERNVFQVDQGLG-IGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGH 696 (813)
Q Consensus 618 g~~~~~~l~~~~t~D~rD~~~~Pt~G~~~~~~~e~~~~-lg~d~~~f~k~~~~~~~y~~l~~~~~~~~~~~~~vl~~r~~ 696 (813)
......+.++++||+ |+..+|+.|+++.+.++.+.. ++++. +| +.......|+++.. ..+.++.|+.
T Consensus 398 -~~~~~g~~~~~~~~~-dd~~~Pt~G~~~~~~~~~s~~~~~s~~-~~-~~~~~~~~~~~~~~--------~~~~~~~R~~ 465 (594)
T COG0729 398 -SLLTPGVEFSYTRDT-DDGLFPTWGDRLDLTIGPSYEALGSDV-DF-RLVQARSGYLRTGG--------ADHRLAGRGE 465 (594)
T ss_pred -eEEecceEEEEEEcc-CCCCCCCccceeeeeeeeccccccCch-HH-hhhhccceeeecCc--------cceEEEEecc
Confidence 012345678888988 999999999999999986644 56666 33 44455555666652 1455899999
Q ss_pred eeeeec----CCCcccccccCCCCccccccCCccCc---------cceeeEEeEEEEEEec-ceeEEEEEeecccCCCCC
Q 039285 697 YGGCVG----DLPSYDAFTLGGPYSVRGYNMGELGA---------ARNILELGAEIRIPVK-NTHVYAFVEHGNDLGSSK 762 (813)
Q Consensus 697 ~G~~~g----~lp~~erF~lGG~~svRGy~~~~ig~---------G~~~~~~s~Elr~pl~-~~~~~~F~D~G~vw~~~~ 762 (813)
+|++.+ ++|++.|||+||..|||||.+.+|+| |..++..++|+||++. ++++++|+|+|.+|++..
T Consensus 466 ~G~il~~~~~~vPps~rFfaGG~~svRGY~y~sI~p~~~~g~~~Gg~~l~~~s~Ey~~~~t~~~~~a~FvD~G~a~n~~~ 545 (594)
T COG0729 466 LGAILTGDLDDVPPSLRFFAGGDRSVRGYGYQSIGPQDANGDLLGGRSLVTGSLEYQYLVTDPWGLAVFVDAGSAGNNFT 545 (594)
T ss_pred cceEeeCccccCCccceeecCCCcceeccccccccCcCCCCCcccceEEEEeeEEEEEeccCcEEEEEEEEccccccCCc
Confidence 999863 59999999999999999999999984 6789999999999997 699999999999998632
Q ss_pred CCCCCCccccccCCceeeeeEEEE----EeeEEEEEEEecC---CCCeEEEEEeccCC
Q 039285 763 DVKGNPTEVYRRMGHGSSYGVGAK----LGLVRAEYAVDHN---TGTGALFFRFGERY 813 (813)
Q Consensus 763 ~~~~~~~~~~~~~~~~~s~G~Glr----lGpirld~a~~~~---~~~~~f~F~iG~~F 813 (813)
. . .++++.++|+|+| +||||||+|++.+ +...+||++||+.|
T Consensus 546 ~------~---~~d~k~G~Gigvr~~SPvGPIr~DiA~pl~~~~~~~~~~Yi~iG~~f 594 (594)
T COG0729 546 R------L---FSDLKKGAGIGVRWDSPVGPIRFDIAVPLEDKDDKKFQFYIGIGQEF 594 (594)
T ss_pred h------h---hhhhhccceeeEeecCCcCCeEEEeeccccccCCCCeeEEEEecccC
Confidence 1 1 1348899999999 8999999999876 57889999999987
No 7
>PF01103 Bac_surface_Ag: Surface antigen; InterPro: IPR000184 The protein sequences of d15 from various strains of Haemophilus influenzae are highly conserved, with only a small variable region identified near the carboxyl terminus of the protein []. D15 is a highly conserved antigen that is protective in animal models and it may be a useful component of a universal subunit vaccine against Haemophilus infection and disease []. Membrane proteins from other bacteria have been shown to elicit protective immunity. Oma87 is a protective outer membrane antigen of Pasteurella multocida [].; GO: 0019867 outer membrane
Probab=100.00 E-value=1.1e-30 Score=285.32 Aligned_cols=294 Identities=23% Similarity=0.315 Sum_probs=226.7
Q ss_pred cccCCcceEEEEEEeecccCCCccceEEEEEEeccccCCCCCCcceEEEEEeeccccCccccCCCCCCcCCceeEeeeee
Q 039285 481 NLQGLNRSILGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGL 560 (813)
Q Consensus 481 Nl~G~G~~l~~~~~~s~~~~~~~~~~~~lsy~~P~l~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~ 560 (813)
||+|+|+++.+++.. +...+.+.++|++|++.+ ..+++.++++...... .....|..++.++
T Consensus 1 N~~G~g~~~~~~~~~-----~~~~~~~~~~~~~P~~~~----~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~ 62 (323)
T PF01103_consen 1 NLFGTGQSLSVSATY-----GSDSQSLSLSYTNPYFFG----DRLSLGFSLYYSSSDS---------DEFSSYDEQTFGF 62 (323)
T ss_pred CCCCCCeEEEEEEEE-----cCceEEEEEEEEEcCCCC----CCEEEEEEEEEEEccc---------cccccceeeeccc
Confidence 899999999999986 458899999999999887 5788888887664211 1223577888999
Q ss_pred EEEEeEecccCceEEEEEEEEEEEeecCCCCcCCCCccccCCCCcCCCCCCccccCCCcceeEEEEEEEEEeCCCCCCCC
Q 039285 561 KANITENFTRQSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTKFVNGA 640 (813)
Q Consensus 561 ~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~g~~~~~~l~~~~t~D~rD~~~~P 640 (813)
.+.+++++.+.+.+++++.+.+.............. . +......+......+.+.++||++|+.++|
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~d~~d~~~~p 129 (323)
T PF01103_consen 63 SLSLGYRISPNWSLSLGYSYSRNDFSTSSGSPFSDS---V----------SSSDLQDGKSNISSLGLSLSYDTRDNSFFP 129 (323)
T ss_pred cccceeEcccceEEEEEEEEEEEEEEcCCCcccccc---c----------ccccccCCceEEEEEEEEEEEecCCCccCC
Confidence 999999999999999999887766433222110000 0 000011223456788999999999999999
Q ss_pred CCccEEEEEEEecc-cCCCCCcceEEEEEEEEEEEEcccccccCCCCCCcEEEEEEEeeeee-----cCCCcccccccCC
Q 039285 641 IVGERNVFQVDQGL-GIGSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCV-----GDLPSYDAFTLGG 714 (813)
Q Consensus 641 t~G~~~~~~~e~~~-~lg~d~~~f~k~~~~~~~y~~l~~~~~~~~~~~~~vl~~r~~~G~~~-----g~lp~~erF~lGG 714 (813)
++|+++.+..+.+. .++++.. |.|+++++++|+++.+. +++++++++.+++.. +.+|+.|+|++||
T Consensus 130 ~~G~~~~~~~~~~~~~~~~~~~-f~k~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~lp~~~~f~lGG 201 (323)
T PF01103_consen 130 TKGWYLSFSLEFSGKFLGSDSN-FYKFELSARYYYPLGNN-------HKFVLALRLQGGYIFGYSNSDNLPFSERFYLGG 201 (323)
T ss_pred ccceEEEEEEEEecccCCCcce-EEEEEEEEEEEEECccC-------CceEEEEeeeeeEeeecccccccchhhhhccCC
Confidence 99999999999764 3677877 69999999999999741 368999999999865 2499999999999
Q ss_pred CCccccccCCccCc---------cceeeEEeEEEEEEec------ceeEEEEEeecccCCCCCCCCCCCccccccCCcee
Q 039285 715 PYSVRGYNMGELGA---------ARNILELGAEIRIPVK------NTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGS 779 (813)
Q Consensus 715 ~~svRGy~~~~ig~---------G~~~~~~s~Elr~pl~------~~~~~~F~D~G~vw~~~~~~~~~~~~~~~~~~~~~ 779 (813)
.++||||..++++| |+.++.+++|+|+|++ .+++++|+|+|++|+...+...........+.++.
T Consensus 202 ~~svRGy~~~~~~~~~~~~~~~gG~~~~~~~~E~r~~l~~~~~~~~~~~~~F~D~G~v~~~~~~~~~~~~~~~~~~~~~~ 281 (323)
T PF01103_consen 202 PNSVRGYRYRSIGPRDGDGDSLGGDYYFTASAEYRFPLPKIPGSPNLYLVAFADAGNVWNDNDNFPLNSDSFTSKDNIRS 281 (323)
T ss_pred CCccccccCCccccccccCcccCceEEEEEeeeeEeeccccccCCcEEEEEEEccccccccCCCcCcccccccccccccc
Confidence 99999999999986 5899999999999993 37899999999999876543221111111135789
Q ss_pred eeeEEEE----EeeEEEEEEEecC----CCCeEEEEEeccCC
Q 039285 780 SYGVGAK----LGLVRAEYAVDHN----TGTGALFFRFGERY 813 (813)
Q Consensus 780 s~G~Glr----lGpirld~a~~~~----~~~~~f~F~iG~~F 813 (813)
|+|+||| +||||+|||++.+ +...+|||+||+.|
T Consensus 282 s~G~Glr~~~~~g~lr~d~a~~l~~~~~~~~~~f~f~~g~~F 323 (323)
T PF01103_consen 282 SVGVGLRYDTPIGPLRFDYAYPLNKPPGDDRNRFYFSIGQTF 323 (323)
T ss_pred eEEEEEEEecCcEEEEEEEEEEccCCCCCcceEEEEEEeCCC
Confidence 9999999 7999999999543 23459999999988
No 8
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=99.96 E-value=1.6e-26 Score=266.88 Aligned_cols=436 Identities=19% Similarity=0.221 Sum_probs=290.0
Q ss_pred HHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCceeEEe-eeeeecCeEEEEEEeeceeeeeEEeeeccCCceeecCc
Q 039285 302 HNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYACAQVV-NFGNLNTREVVCEVVEGDITQLVVQFQDKLGNVVEGNT 380 (813)
Q Consensus 302 l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~~a~V~-~~~~~~~~~i~i~I~EG~~~~i~i~~i~~~G~~i~Gnt 380 (813)
|++++. -..|..+....|...+.+|+++|.++||..++|. |.++++++.|.|+|.||++.+|. |.|+.
T Consensus 91 l~~~~~-~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q~i~~G~l~l~VveG~i~~i~----------i~g~~ 159 (554)
T COG2831 91 LQAILA-PYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQDLKSGTLRLQVVEGRIEDIR----------ITGDS 159 (554)
T ss_pred HHHhhH-HhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCCcccCCeEEEEEeceEeeeEE----------EcCCC
Confidence 334444 2458999999999999999999999999999994 66788899999999999998873 44553
Q ss_pred --cHHHHHHhccccCCCCCccChHHHHHHHHHHhcCCCceeeEeeecCCCCCCCeEEEEEEEEEccCceEEEeEEEeecC
Q 039285 381 --QLAVVKRELPKQLRQGNVFNIEAGKQALRNINSLSLFSNIEVNPRPDEKNEGGIIVEIKLKELDQKSAEVSAEWSLVP 458 (813)
Q Consensus 381 --~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E~~~~~~~lg~g~s~~~ 458 (813)
++..++..++ ..+|+++|..+||+.++.|.++.--+ |.+++.|... ++..+|.|+++++++.++.+++ ++.
T Consensus 160 ~~~~~~~~~~~p--~~~g~~Ln~~~lEq~l~~l~~~P~~q-a~~~l~pg~~-~G~S~l~i~~~~~~~~~~~~~~--DN~- 232 (554)
T COG2831 160 DLRSVALRSLFP--AHRGDPLNLRDLEQGLELLNRLPGVQ-ADAELVPGSE-PGESDLVIKVQQGKPWRVSASA--DNY- 232 (554)
T ss_pred ccchhhHHhhcc--ccCCCCCCHHHHHHHHHHhhhCcccc-ceeEEccCCC-CCccEEEEEeeeCCCeEEEEEe--cCC-
Confidence 4467888898 89999999999999999999887654 8888888876 4899999999998866666554 331
Q ss_pred CCCCCCCcccCCCeEEEEEeeecccCCcceEEEEEEeecccCCCccceEEEEEEeccccCCCCCCcceEEEEEeeccc-c
Q 039285 459 GRGGRPTFASLQPGGTVSFEHRNLQGLNRSILGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRK-L 537 (813)
Q Consensus 459 G~~G~st~~~~~~~~~~s~~~~Nl~G~G~~l~~~~~~s~~~~~~~~~~~~lsy~~P~l~~~~~p~~~s~~~~~~~~~~-~ 537 (813)
|.-+.+.. ++.+++...|++|.|+++.+++..+ ...+....++++|+.|+-. ...++..+....+. .
T Consensus 233 ---G~~~tG~~--r~~~~l~~dn~lglgD~l~~~~~~~--~~~~~~~~~~~~Ys~P~g~-----~~~~~~~s~~~y~~~~ 300 (554)
T COG2831 233 ---GSKSTGRY--RLGVGLSLDNPLGLGDQLSLSYSRS--LDGQTTNNYSLSYSVPLGY-----WTFSLGASYSEYRQVL 300 (554)
T ss_pred ---CCcCccce--eeEeEEEecCCCcchhheeehhccc--CCCcccceEEEEEEEEEcc-----ceeEEEeeeeeeEeec
Confidence 22223444 8999999999999999999998642 1122246899999999632 23334333222211 1
Q ss_pred CccccCCCCCCcCCceeEeeeeeEEEEeEecccCc--eEEEEEEEEEEEeecCCCCcCCCCccccCCCCcCCCCCCcccc
Q 039285 538 SPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQS--KFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLS 615 (813)
Q Consensus 538 ~~~~~~~~~~~~~~~y~~~~~G~~~~l~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s 615 (813)
...+ ..-.|.-+....++.+.+++.++. ++++++.+.+-+..+.-.+.... ...
T Consensus 301 ~~~~-------~~~~~~G~s~~~~~~l~~~l~R~~~~~~s~~~~~~~r~~~~~~~~~~~~-----------~q~------ 356 (554)
T COG2831 301 EGPF-------DVLDYQGKSQNLSLRLSHPLLRNRSSKLSLGLGLSHRRSENYLDDTEIE-----------VQR------ 356 (554)
T ss_pred ccCC-------ceEEEecceEEEEEEeeeEEEecCcceEEEEEEEEEehhhhhhcccccc-----------ccc------
Confidence 1101 111233445567778888887754 45555544433221111110000 000
Q ss_pred CCCcceeEEEEEEEEE------eCCCCCCCCCCccEEEEEEEeccc-CC-CCCcceEEEEEEEEEEEEcccccccCCCCC
Q 039285 616 GTGIDRMAFLQGNITR------DNTKFVNGAIVGERNVFQVDQGLG-IG-SKFPFFNRHQLTLTRFFQLKQVEEGANKPP 687 (813)
Q Consensus 616 ~~g~~~~~~l~~~~t~------D~rD~~~~Pt~G~~~~~~~e~~~~-lg-~d~~~f~k~~~~~~~y~~l~~~~~~~~~~~ 687 (813)
.....+.+++++ ...+.-+.=.+|..+--....... .+ .+.. |.++.+++.+.+|+.. .
T Consensus 357 ----r~~~~~~~gl~~~~~~~~~~~~~~l~~~~G~~~lGa~~~~~~~~~~~~~~-f~~~~~~~~~~~~f~~--------~ 423 (554)
T COG2831 357 ----RRLTAVELGLSGRRYLGGGTLDASLGYRRGLGALGASKDDEETNGEPTSR-FKKLNGNASLLQPFGL--------G 423 (554)
T ss_pred ----cccccEEecceEEEEeccceecccchhhhCchhhcCCCCchhhcCCCCcc-eEEEEEeeEEEeeccc--------c
Confidence 001111111111 111111111122111100000000 12 2445 6899999999999972 1
Q ss_pred CcEEEEEEEeeeeecCCCcccccccCCCCccccccCCccCccceeeEEeEEEEEEec-c--eeEEEEEeecccCCCCCCC
Q 039285 688 PPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVK-N--THVYAFVEHGNDLGSSKDV 764 (813)
Q Consensus 688 ~~vl~~r~~~G~~~g~lp~~erF~lGG~~svRGy~~~~ig~G~~~~~~s~Elr~pl~-~--~~~~~F~D~G~vw~~~~~~ 764 (813)
++.+..++.+.++...|+..|+|.+||.++||||+.+.+. |+..|.++.|+|+|+. . +..++|+|+|.+|......
T Consensus 424 ~~~~~~~~~~Q~s~~~L~s~e~fsiGg~~sVRGf~~~~ls-gD~G~~~snel~~~~~~~~~~~~y~f~D~G~v~~~~~~~ 502 (554)
T COG2831 424 PFLYATQFNAQYSGDPLLSSEKFSIGGRYSVRGFDGGSLS-GDRGWYLSNELRWPLPPGGALQPYVFVDYGKVYNNSAEY 502 (554)
T ss_pred cEEEEEEEEEEEcCCCCCcHHHeecCCCceecccCCCCcc-ccceEEEEEEEEeeccCCCceeEEEEEEeEEEecccccc
Confidence 4778888888888889999999999999999999998886 9999999999999996 3 7899999999999862211
Q ss_pred CCCCccccccCCceeeeeEEEEE--e---eEEEEEEEec------CCCCeEEEEEeccCC
Q 039285 765 KGNPTEVYRRMGHGSSYGVGAKL--G---LVRAEYAVDH------NTGTGALFFRFGERY 813 (813)
Q Consensus 765 ~~~~~~~~~~~~~~~s~G~Glrl--G---pirld~a~~~------~~~~~~f~F~iG~~F 813 (813)
+ .....+|+|+|+|+ . -.+|++|++. +....++.|+++.+|
T Consensus 503 ---~-----~~~~l~g~~~Glr~~~~~~f~~~l~~g~pl~~p~~~~~~~~~~~~~~~~~f 554 (554)
T COG2831 503 ---L-----SGETLAGAGLGLRGNLKDGFSYDLDLGRPLSKPAGFDNRRTVVGFSFSYSF 554 (554)
T ss_pred ---C-----CCCeeEEEEEeEEeeecCcceeEEEecccccCccccCCCCceeEEEEEEEC
Confidence 1 12256899999993 2 3455556632 124678889888776
No 9
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=99.94 E-value=1.8e-26 Score=246.69 Aligned_cols=377 Identities=16% Similarity=0.193 Sum_probs=254.1
Q ss_pred eecC--ccHHHHHHhccccCCCCCccCh--HHHHHHHHHHhcCCCceeeEeeecC---CCCCCCeEEEEEEEEEccCceE
Q 039285 376 VEGN--TQLAVVKRELPKQLRQGNVFNI--EAGKQALRNINSLSLFSNIEVNPRP---DEKNEGGIIVEIKLKELDQKSA 448 (813)
Q Consensus 376 i~Gn--t~~~vI~r~l~~~l~~G~~yn~--~~l~~~~~~L~~~g~F~~V~i~~~~---~~~~~~~v~l~i~V~E~~~~~~ 448 (813)
+.|+ |++..|.+++.. +.+...+.. ........+|..++.|++|++.... .+..|+..+|++.|.|.++-+.
T Consensus 43 v~Gl~~Tkdd~I~k~v~~-~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p~~~~Vt~~v~E~kr~tg 121 (457)
T KOG2602|consen 43 VSGLERTKDDFIMKEVDL-VFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALPGGLVVTFLVTEPKRLTG 121 (457)
T ss_pred eccccccchHHHHHHhhh-hhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCCCceeEEEEeeecchhee
Confidence 5565 899999999861 222222211 1123344678899999999987654 2344678999999999887444
Q ss_pred EEeEEEeecCCCCCCCCcccCCCeEEEEEeeecccCCcceEEEEEEeecccCCCccceEEEEEEeccccCCCCCCcceEE
Q 039285 449 EVSAEWSLVPGRGGRPTFASLQPGGTVSFEHRNLQGLNRSILGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFR 528 (813)
Q Consensus 449 ~lg~g~s~~~G~~G~st~~~~~~~~~~s~~~~Nl~G~G~~l~~~~~~s~~~~~~~~~~~~lsy~~P~l~~~~~p~~~s~~ 528 (813)
..+....+.++ ...+.+..+|++|+|+.|..+++++ ......+.++|..|.+.+ ..+.+.
T Consensus 122 ~~GT~~gn~~~------------s~~~~l~~~ni~G~ge~l~~~~sy~----~~~~~~~~l~f~~P~~~~----~~~~~~ 181 (457)
T KOG2602|consen 122 STGTDVGNREG------------SVELNLKLPNILGRGENLSGQVSYG----CTRSTDMGLSFYKPRFHG----LKTPFS 181 (457)
T ss_pred eccccccCCCc------------ccchhcccccccCcceeeeeeEEEe----cccCceeeeEEEecccCC----CCcchh
Confidence 44422222111 4577778899999999999999873 356789999999998766 233333
Q ss_pred EEEeeccccCccccCCCCCCcCCceeEeeeeeEEEEeEecccC--ceEEEEEEEEEEEeecCCCCcCCCCccccCCCCcC
Q 039285 529 ASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQ--SKFTYGLVMEEITTRDESSHISPHGQRVLPSGGIS 606 (813)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~l~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 606 (813)
+..+.+..+. ....++++...|+++.+.++.... ..+.+..-|.++. + .+..++..+
T Consensus 182 ~~~~~~~~d~---------~~~ss~d~~~~g~sL~l~~~~~~~l~H~l~~~~~WR~l~--~----~sq~as~sv------ 240 (457)
T KOG2602|consen 182 SFSIFRTQDW---------MKWSSLDETHRGASLELSAEDWFLLFHELKYEIAWRNLG--D----LSQGASFSV------ 240 (457)
T ss_pred hhhhhhhhcc---------cccccccccccceEEEEecchhhhhhHHHHHHHHHHhhc--c----ccccccHHH------
Confidence 3322222110 123445556667666665432211 0111111122211 0 000011000
Q ss_pred CCCCCccccCCCcceeEEEEEEEEEeCCCCCCCCCCccEEEEEEEecccCCCCCcceEEEEEEEEEEEEcccccccCCCC
Q 039285 607 ADGPPTTLSGTGIDRMAFLQGNITRDNTKFVNGAIVGERNVFQVDQGLGIGSKFPFFNRHQLTLTRFFQLKQVEEGANKP 686 (813)
Q Consensus 607 ~~~~~~~~s~~g~~~~~~l~~~~t~D~rD~~~~Pt~G~~~~~~~e~~~~lg~d~~~f~k~~~~~~~y~~l~~~~~~~~~~ 686 (813)
....|....++|.+++.+|+||..+.||+|+++....|++ +++++.. |.|.++++++-.|+..
T Consensus 241 -------R~qaG~~L~s~L~~tfv~D~Rd~~~~ptrG~~~k~~~e~~-g~~~~~s-f~k~e~~lq~avpl~~-------- 303 (457)
T KOG2602|consen 241 -------RRQAGHSLKSSLSYTFVFDKRDSSIIPTRGILLKSTSELA-GLFGDVS-FLKSELDLQKAVPLGF-------- 303 (457)
T ss_pred -------HHHhhHHHHHhhcceEEEeccCCcccccccceeEeehhhc-Ccccchh-hhhhhhhheecccccc--------
Confidence 0112334467789999999999999999999999999987 4677877 6999999999999973
Q ss_pred CCcEEEEEEEeeeeec----CCCcccccccCCCCccccccCCccCc--------cceeeEEeEEEEEEec-------cee
Q 039285 687 PPPVLVLHGHYGGCVG----DLPSYDAFTLGGPYSVRGYNMGELGA--------ARNILELGAEIRIPVK-------NTH 747 (813)
Q Consensus 687 ~~~vl~~r~~~G~~~g----~lp~~erF~lGG~~svRGy~~~~ig~--------G~~~~~~s~Elr~pl~-------~~~ 747 (813)
..+|++.++.|++.+ .+++.||||+||+.+||||..++||| |+.++.+.+-+-+|+| .++
T Consensus 304 -~~~~s~~~~~G~l~~~~~~~v~I~dRFylGGps~lRGFk~~giGP~~~~~~lGG~a~~a~~~~L~~~lP~~~~~~~~fr 382 (457)
T KOG2602|consen 304 -DATLSFSFSGGVLKPLGSRPVSIADRFYLGGPSDLRGFKTRGIGPKDEGDFLGGDAFVAAGAHLYFPLPFAKGFKSGFR 382 (457)
T ss_pred -ceeeEeeEeeeeeecCCCCccchhhhhccCCcccccccccCCcCCCCCCcccCCceeeEeeeEecccCCccccccccee
Confidence 478999999999863 47789999999999999999999995 8999999999999886 278
Q ss_pred EEEEEeecccCCCCCCCCCCCccccccCCceeeeeEEEE--Ee-eEEEEEEEe-------cCCCCeEEEEEeccCC
Q 039285 748 VYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAK--LG-LVRAEYAVD-------HNTGTGALFFRFGERY 813 (813)
Q Consensus 748 ~~~F~D~G~vw~~~~~~~~~~~~~~~~~~~~~s~G~Glr--lG-pirld~a~~-------~~~~~~~f~F~iG~~F 813 (813)
+++|+.+|++-+-....+.+-... ....++.|+|+|+- .. ..|+++.|. .+.....|+|++|..|
T Consensus 383 ~h~F~naG~l~~l~s~~~~~~~~k-l~e~~r~S~G~Glv~~~~~~aR~ELNy~~pl~~~e~D~~~~GfqfG~g~~F 457 (457)
T KOG2602|consen 383 GHVFANAGNLANLSSEAPKNTIPK-LLETFRTSVGAGLVVPTPRAARLELNYCLPLKKQENDRIRKGFQFGAGIDF 457 (457)
T ss_pred eEEEeccccccccCcccccchhhh-hhhhhccccccceEEecchhhceeeeeEEEeeeeccchhhcceEecccccC
Confidence 999999999976543221111110 01347899999987 44 678887772 1223678999999887
No 10
>PRK11067 outer membrane protein assembly factor YaeT; Provisional
Probab=99.88 E-value=4.2e-21 Score=235.72 Aligned_cols=261 Identities=16% Similarity=0.212 Sum_probs=200.9
Q ss_pred cccccccCCCCceeeEEe----eeecCccceEEEEEEEEeccCCcccCChhhHhhhc---ccCCCCcccHHHHHHHHHHH
Q 039285 139 ESQDWDAHGLPANIAVQL----SKLSGFRKYKLSEILFFDRQRGATVGTEDSFFEMV---SLRPGGVYTRTQLLKELETL 211 (813)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~----~~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l---~~~~g~~~~~~~l~~d~~~L 211 (813)
|+.+| +.|++.+|.+.. -.+.-.++|.|++|.|+| ++.++++.|++.| .+++|+.++++++++++++|
T Consensus 63 i~~l~-~~g~F~~v~v~~~~~~l~~~v~e~p~I~~I~~~G----n~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l 137 (803)
T PRK11067 63 IRALF-ATGNFEDVRVLRDGNTLLVQVKERPTIASITFSG----NKSVKDDMLKQNLEASGVRVGEALDRTTLSNIEKGL 137 (803)
T ss_pred HHHHH-hcCCCceEEEEecCCEEEEEEecCcEEEEEEEEC----cccCCHHHHHHHHHhccccccccCCHHHHHHHHHHH
Confidence 58889 899999987742 124445688999999995 5678888888776 67899999999999999999
Q ss_pred ----HHcCCcc-eEEEEEEEcCCCceEEEEEEEeeecccceeEEEeeccccccccceecCccCChHHHHHHhhhhhhhhh
Q 039285 212 ----ATCGMFE-KVDMEAKTKPDGTLGLTISFLESTWQSAERIRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKDYK 286 (813)
Q Consensus 212 ----~~~Gyf~-~V~~~~~~~~d~~~~v~i~~~v~e~p~g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~ 286 (813)
+++|||+ +|+++++..+++ .+.|+|.|+ ||++++| .+|.|+||+.+++++|++.|..++..
T Consensus 138 ~~~Y~~~Gy~~~~V~~~~~~~~~~--~v~l~~~i~---EG~~~~I-------~~I~f~GN~~~~~~~L~~~~~~~~~~-- 203 (803)
T PRK11067 138 EDFYYSVGKYSASVKAVVTPLPRN--RVDLKLVFT---EGVSAKI-------QQINIVGNHAFSTDELISRFQLRDEV-- 203 (803)
T ss_pred HHHHHhcCccccEEEEEEEECCCC--eEEEEEEEe---cCCeEEE-------EEEEEECCCCcCHHHHHHHhcCCCCc--
Confidence 5699998 998887665554 578999998 5777776 56689999999999999888632210
Q ss_pred hhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCceeEEeeee-ee--c--CeEEEEEEeecee
Q 039285 287 RRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYACAQVVNFG-NL--N--TREVVCEVVEGDI 361 (813)
Q Consensus 287 ~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~~a~V~~~~-~~--~--~~~i~i~I~EG~~ 361 (813)
. .+. +..+++|+++++++++++|+++|+++||.+|+|.+.. .. + ...|++.|+||++
T Consensus 204 --------------~---~~~-~~~~~~~~~~~l~~d~~~l~~~Y~~~Gy~~a~V~~~~~~~~~~~~~v~i~~~I~eG~~ 265 (803)
T PRK11067 204 --------------P---WWN-VVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEGDQ 265 (803)
T ss_pred --------------c---hhh-hccCCccCHHHHhhhHHHHHHHHHHCCCceEEecCcEEEEcCCCceEEEEEEEeeCCc
Confidence 0 112 2357899999999999999999999999999997643 22 2 2358899999999
Q ss_pred eee-EEeeeccCCceeecCc--cHHHHHHhccccCCCCCccChHHHHHHHHHH----hcCCCc-eeeEeeecCCCCCCCe
Q 039285 362 TQL-VVQFQDKLGNVVEGNT--QLAVVKRELPKQLRQGNVFNIEAGKQALRNI----NSLSLF-SNIEVNPRPDEKNEGG 433 (813)
Q Consensus 362 ~~i-~i~~i~~~G~~i~Gnt--~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L----~~~g~F-~~V~i~~~~~~~~~~~ 433 (813)
++| .+. |.||+ .++.|++.+. +++|++|+..++++..++| .+.||+ ..|...+..+. +.+.
T Consensus 266 ~~i~~i~--------~~G~~~~~~~~l~~~~~--~k~G~~~~~~~~~~~~~~i~~~~~~~GY~~a~v~~~~~~~~-~~~~ 334 (803)
T PRK11067 266 YKLSGVQ--------VSGNLAGHSAEIEKLTK--IEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQTQPEIND-ADKT 334 (803)
T ss_pred EEEEEEE--------EEecCCCCHHHHHHhhc--CCCCceeCHHHHHHHHHHHHHHHHhCCCCcceeeeccccCC-CCCE
Confidence 888 333 56773 5778999998 9999999998887776655 357874 34543333333 3468
Q ss_pred EEEEEEEEEccCce
Q 039285 434 IIVEIKLKELDQKS 447 (813)
Q Consensus 434 v~l~i~V~E~~~~~ 447 (813)
++|++.|.|+++..
T Consensus 335 v~i~~~v~eG~~y~ 348 (803)
T PRK11067 335 VKLHVNVDAGNRFY 348 (803)
T ss_pred EEEEEEEeeCCeEE
Confidence 99999999998754
No 11
>TIGR03303 OM_YaeT outer membrane protein assembly complex, YaeT protein. Members of this protein family are the YaeT protein of the YaeT/YfiO complex for assembling proteins into the outer membrane of Gram-negative bacteria. This protein is similar in sequence and function to a non-essential paralog, YtfM, that is also in the Omp85 family. Members of this family typically have five tandem copies of the surface antigen variable number repeat (pfam07244), followed by an outer membrane beta-barrel domain (pfam01103), while the YtfM family typically has a single pfam07244 repeat.
Probab=99.88 E-value=3.3e-19 Score=217.46 Aligned_cols=269 Identities=16% Similarity=0.268 Sum_probs=203.8
Q ss_pred eccchhhccccccccccccCCCCceeeEE------eeeecCccceEEEEEEEEeccCCcccCChhhHhhhc-ccCCCCcc
Q 039285 127 FGTELAIADEDNESQDWDAHGLPANIAVQ------LSKLSGFRKYKLSEILFFDRQRGATVGTEDSFFEMV-SLRPGGVY 199 (813)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l-~~~~g~~~ 199 (813)
+++..+.++ ++++| +.|++.++.+. +..+ .++++|++|+|.| ++.++++.|++.+ .+++|+.|
T Consensus 31 ~~~~~l~~~---~~~l~-~~g~f~~v~~~~~~~~l~~~v--~e~~~i~~i~~~G----~~~~~~~~l~~~~~~~~~g~~~ 100 (741)
T TIGR03303 31 ISDEKIDEA---IKALY-ATGYFEDVKIEREGGVLVIKV--KERPIINSIVFSG----NKEIKKDQLKKALVGIKKGEIF 100 (741)
T ss_pred cCHHHHHHH---HHHHH-hcCCcceEEEEecCCEEEEEE--EecceEEEEEEEC----CccCCHHHHHHHHhhccCCCcC
Confidence 445555544 46678 67888776553 2233 3457899999995 5678999999999 99999999
Q ss_pred cHHHHHHHHHHH----HHcCCcc-eEEEEEEEcCCCceEEEEEEEeeecccceeEEEeeccccccccceecCccCChHHH
Q 039285 200 TRTQLLKELETL----ATCGMFE-KVDMEAKTKPDGTLGLTISFLESTWQSAERIRCINVGLMQQSKPIEMDADMTEREK 274 (813)
Q Consensus 200 ~~~~l~~d~~~L----~~~Gyf~-~V~~~~~~~~d~~~~v~i~~~v~e~p~g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l 274 (813)
+++.+++|+++| .++|||+ +|+++++..+++ .+.|+|.|+ ||+++++ .+|.|+||..+++++|
T Consensus 101 ~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~--~~~v~~~v~---eg~~~~i-------~~i~~~Gn~~~~~~~l 168 (741)
T TIGR03303 101 NRAKLEKDEKALKEFYRSRGKYNAKVEAKVTPLPRN--RVDLEFNIK---EGKKAKI-------KKINFVGNKAFSDSEL 168 (741)
T ss_pred CHHHHHHHHHHHHHHHHHcCcceeEEEEEEEECCCC--eEEEEEEEe---cCCEEEE-------EEEEEECCCcCCHHHH
Confidence 999999999988 4599998 898877654444 588999998 5777776 4568999999999999
Q ss_pred HHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCceeEEee-eeee--cC--
Q 039285 275 LEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYACAQVVN-FGNL--NT-- 349 (813)
Q Consensus 275 ~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~~a~V~~-~~~~--~~-- 349 (813)
++.|...+. ..+.+++.+++|+.+.+++++++|.++|+++||++|+|.+ .... ++
T Consensus 169 ~~~~~~~~~--------------------~~~~~~~~~~~~~~~~l~~~~~~i~~~y~~~Gy~~a~v~~~~~~~~~~~~~ 228 (741)
T TIGR03303 169 RDVFALKES--------------------NFWSWFTGDDKYSKQKLEADLELLRSFYLNRGYLDFKVESTQVSITPDKKG 228 (741)
T ss_pred HHHHhcCcc--------------------hhHHhccCCCeECHHHHhhhHHHHHHHHHhCCcEEEEEcCCEEEECCCCCE
Confidence 888763221 1222356689999999999999999999999999999973 3333 22
Q ss_pred eEEEEEEeeceeeeeEEeeeccCCceeecCc--cHHHHHHhccccCCCCCccChHHHHHHHHHHhc----CCCceeeEee
Q 039285 350 REVVCEVVEGDITQLVVQFQDKLGNVVEGNT--QLAVVKRELPKQLRQGNVFNIEAGKQALRNINS----LSLFSNIEVN 423 (813)
Q Consensus 350 ~~i~i~I~EG~~~~i~i~~i~~~G~~i~Gnt--~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L~~----~g~F~~V~i~ 423 (813)
..|++.|+||+++++.-. .|.|++ .++.|++.+. +++|++|+.+++++++++|.+ .||. .++|.
T Consensus 229 ~~i~~~v~eG~~~~i~~i-------~i~g~~~~~~~~l~~~~~--~~~G~~~~~~~~~~~~~~l~~~y~~~Gy~-~~~v~ 298 (741)
T TIGR03303 229 VYITYNIKEGEQYKFGEV-------TIEGDLIGPDEELKKLLK--IKKGEVFNRSKVTKIVKAIKDLLGEKGYA-FANVN 298 (741)
T ss_pred EEEEEEeccCCCEEEEeE-------EEEeccCCcHHHHHHhhc--CCCCCeeCHHHHHHHHHHHHHHHHhcCCc-eeEEE
Confidence 358899999998877221 466774 5788999999 999999999999999888753 6763 44444
Q ss_pred ecCCC-CCCCeEEEEEEEEEccCce
Q 039285 424 PRPDE-KNEGGIIVEIKLKELDQKS 447 (813)
Q Consensus 424 ~~~~~-~~~~~v~l~i~V~E~~~~~ 447 (813)
+.+.. .+.+.++|++.|.|+++..
T Consensus 299 ~~~~~~~~~~~v~v~~~v~eg~~~~ 323 (741)
T TIGR03303 299 PRPQINDENKTVDLTFKVDPGKRVY 323 (741)
T ss_pred ecceECCCCCEEEEEEEEccCCeEE
Confidence 43322 2235799999999998654
No 12
>COG4775 Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]
Probab=99.85 E-value=4.8e-20 Score=218.94 Aligned_cols=264 Identities=18% Similarity=0.296 Sum_probs=208.9
Q ss_pred cccccccCCCCceeeEEeee----ecCccceEEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHHHH-
Q 039285 139 ESQDWDAHGLPANIAVQLSK----LSGFRKYKLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETLAT- 213 (813)
Q Consensus 139 ~~~~~~~~g~~~~~~~~~~~----i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~~- 213 (813)
|+++| +.|++.++.+.... +.--++|.|++|.|.| ++.++++.|++.|.+++|+.++++.|++++++|.+
T Consensus 63 ik~L~-~tg~F~~v~~~~~~~~Lvv~V~e~p~I~~v~~~G----n~~i~~~~L~~~l~~~~g~~~~~~~l~~~~~~l~e~ 137 (766)
T COG4775 63 IKALY-ATGYFEDVRVEREGGTLVVTVKERPVINSVVFSG----NKSIKDDALKKNLKIKPGEVLNRAKLEADVEALKEA 137 (766)
T ss_pred HHHHH-hcCCCcceEEEEcCCEEEEEEecCCcEEEEEEeC----CccCChHHHHHhhccCCCCcccHHHHHHHHHHHHHH
Confidence 58899 99999987664321 2334578999999995 67899999999999999999999999999999865
Q ss_pred ---cCCcc-eEEEEEEEcCCCceEEEEEEEeeecccceeEEEeeccccccccceecCccCChHHHHHHhhhhhhhhhhhc
Q 039285 214 ---CGMFE-KVDMEAKTKPDGTLGLTISFLESTWQSAERIRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKDYKRRI 289 (813)
Q Consensus 214 ---~Gyf~-~V~~~~~~~~d~~~~v~i~~~v~e~p~g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i 289 (813)
.||++ .|+++++..+++ .|.|.|.|+ ||++.++ +.|.|+||+.+++.+|+..|..++.
T Consensus 138 Y~~~G~~~~~v~~~~~~~~~~--~v~v~f~i~---eG~~~~i-------~~I~~~Gn~~~s~~~l~~~~~~k~~------ 199 (766)
T COG4775 138 YLSRGYYSVKVTYKVTPLPRN--RVDVVFVIN---EGPSAKI-------KQINFEGNTAFSDSDLESVVQTKES------ 199 (766)
T ss_pred HHhcCeecceeEEEEEECCCC--eEEEEEEeC---CCCccce-------eeeEEeccccccchhhhhheeeccc------
Confidence 89999 999998877754 799999998 4655554 5678999999999999888764322
Q ss_pred cccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCceeEEeeee-ee--c--CeEEEEEEeeceeeee
Q 039285 290 DKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYACAQVVNFG-NL--N--TREVVCEVVEGDITQL 364 (813)
Q Consensus 290 ~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~~a~V~~~~-~~--~--~~~i~i~I~EG~~~~i 364 (813)
..+.|+...+.|++.+++.|++.|+.+|.++||++++|.... .. + ...|++.|.||+++++
T Consensus 200 --------------~~~~~~~~~~~y~~~~l~~D~e~lr~~Y~n~Gy~d~~v~s~~~~~~~~k~~~~vt~~V~EG~~y~~ 265 (766)
T COG4775 200 --------------NIWGWLTRLDKYDPDKLEADLETLRSFYLNRGYADFRVSSTQVSLDPDKKGVTVTYTVKEGPQYKF 265 (766)
T ss_pred --------------eeEEEEecccccChhhhhccHHHHHHHHHhCceEEEEEeeeeecccCCCccEEEEEEEccCCceEE
Confidence 112234456699999999999999999999999999996543 33 2 2358899999999887
Q ss_pred EEeeeccCCceeecCc--cHHHHHHhccccCCCCCccChHHHHHHHHHHh----cCCC-ceeeEeeecCCCCCCCeEEEE
Q 039285 365 VVQFQDKLGNVVEGNT--QLAVVKRELPKQLRQGNVFNIEAGKQALRNIN----SLSL-FSNIEVNPRPDEKNEGGIIVE 437 (813)
Q Consensus 365 ~i~~i~~~G~~i~Gnt--~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L~----~~g~-F~~V~i~~~~~~~~~~~v~l~ 437 (813)
.-. .|+|++ ..+.|.+++. +++|++|+.++++++..+|. +.|| |.+|.+.+.++.+ ...++|.
T Consensus 266 ~~i-------~i~g~~~~~~~el~~~~~--~~~g~~fn~~~i~~~~~~I~~~~~~~GY~~a~V~p~~~~n~~-~~tv~v~ 335 (766)
T COG4775 266 GSV-------LIEGNLAGVSEELEKLLK--VKPGKLFNRKKIEDDADKIKERYARYGYAFANVSPQPDANDE-NKTVDVV 335 (766)
T ss_pred EEE-------EEEcCccCcHHHHHHhhc--cCCCceEcHHHHHHHHHHHHHHHHhcCceeeEeeeecccCCC-CcEEEEE
Confidence 222 367775 4778888998 99999999999999988774 5676 5566555555543 3579999
Q ss_pred EEEEEccCceEE
Q 039285 438 IKLKELDQKSAE 449 (813)
Q Consensus 438 i~V~E~~~~~~~ 449 (813)
++|.|+++..+.
T Consensus 336 ~~V~~g~~~~V~ 347 (766)
T COG4775 336 FRVDEGDRVYVR 347 (766)
T ss_pred EEEEcCCceeee
Confidence 999999987754
No 13
>PF03865 ShlB: Haemolysin secretion/activation protein ShlB/FhaC/HecB; InterPro: IPR005565 Haemolysin (HlyA) and related toxins are secreted across both the cytoplasmic and outer membranes of Gram-negative bacteria in a process which proceeds without a periplasmic intermediate. HlyA is directed by an uncleaved C-terminal targeting signal and the HlyD and HlyB translocator proteins [].; PDB: 2QDZ_A 3NJT_A.
Probab=99.82 E-value=1.8e-17 Score=186.81 Aligned_cols=319 Identities=19% Similarity=0.184 Sum_probs=167.0
Q ss_pred HhccccCCCCCccChHHHHHHHHHHhcCCCceeeEeeecCCCCCCCeEEEEEEEEEccCceEEEeEEEeecCCCCCCCCc
Q 039285 387 RELPKQLRQGNVFNIEAGKQALRNINSLSLFSNIEVNPRPDEKNEGGIIVEIKLKELDQKSAEVSAEWSLVPGRGGRPTF 466 (813)
Q Consensus 387 r~l~~~l~~G~~yn~~~l~~~~~~L~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E~~~~~~~lg~g~s~~~G~~G~st~ 466 (813)
-.++ ..+|+++|..+||+.+++|.++.-- +|++++.|.++ ++..+|.|++++.++..+ .+++++. |....
T Consensus 9 ~~fP--~~~G~~LnlrdlEQgle~lnrl~~~-~~~~~i~PG~~-~G~S~i~i~~~~~~~~~~--~~~~DN~----Gs~~T 78 (404)
T PF03865_consen 9 TAFP--NRKGKPLNLRDLEQGLEQLNRLPSN-QAKIDILPGEE-PGTSDIVIENQPSKPWSG--SLSLDNS----GSKST 78 (404)
T ss_dssp --ST--T-TT-B--HHHHHHHHHHH-S-SSE-EEEEEEEE-SS-TTEEEEEEEEEE-SS-EE--EEEEEE-----SSS-S
T ss_pred ccCC--CCCCCCCCHHHHHHHHHHhccCCCC-cceEEEecCCC-CCEEEEEEEecccCCEEE--EEEEecC----Ccccc
Confidence 3566 8999999999999999999988753 78888888876 488999999988775554 4445542 33333
Q ss_pred ccCCCeEEEEEeeecccCCcceEEEEEEeecccC-CCccceEEEEEEeccccCCCCCCcceEEEEEeeccccCccccCCC
Q 039285 467 ASLQPGGTVSFEHRNLQGLNRSILGSVTTSNFLN-PQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGP 545 (813)
Q Consensus 467 ~~~~~~~~~s~~~~Nl~G~G~~l~~~~~~s~~~~-~~~~~~~~lsy~~P~l~~~~~p~~~s~~~~~~~~~~~~~~~~~~~ 545 (813)
... .+.+++...|+||.++.|++++..+.... ......+.+.|..||- .+++++...+++.... ....
T Consensus 79 G~~--q~~~~l~~dnplgl~D~lsls~~~~~~~~~~~~~~~~~~~YsvP~G-------~~~ls~~~s~s~y~~~--~~~~ 147 (404)
T PF03865_consen 79 GRY--QGGATLSLDNPLGLNDQLSLSYSSSLDNPDSRYSRSYSLSYSVPYG-------YWTLSLFASYSDYRYH--QGLS 147 (404)
T ss_dssp S-E--EEEEEEEEE-SSSSS-EEEEEEEE--S--SS-EEEEEEEEEEEEET-------TEEEEEEEEEEEEE-----SSS
T ss_pred ceE--EEEEEEEECCCccccceeEEEEeccccCcccCCceEEEEEEEeeee-------ceEEEEEEEEeEEEEe--eccc
Confidence 444 78899999999999999999887532111 1234678899999963 3445443322221110 0000
Q ss_pred CCCcCCceeEeeeeeEEEEeEecccC--ceEEEEEEEEEEEeecCCCCcCCCCccccCCCCcCCCCCCccccCCCcceeE
Q 039285 546 GVDEVPAIWVDRAGLKANITENFTRQ--SKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMA 623 (813)
Q Consensus 546 ~~~~~~~y~~~~~G~~~~l~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~g~~~~~ 623 (813)
...-.+.-+....++.+.+.+.+. .++++.+.+.+-+..+.-.+.. +.. ...+++
T Consensus 148 --~~~~~~~G~s~~~~~~~~~~l~R~~~~k~~l~~~l~~k~~~n~i~d~~------------------i~v---~~~~lt 204 (404)
T PF03865_consen 148 --YSTYDLSGDSRSLGLRLSYVLYRSQNSKTSLSAGLSHKKSKNYINDIE------------------IEV---QSRRLT 204 (404)
T ss_dssp --S-----EEEEEEEEEEEEEEEE--SSEEEEEEEEEEEEEEEEE--TTS------------------------EEEEEE
T ss_pred --cceEEeeeeEEEEEEEeeEEEEECCCceEEEEEEEEEEEcccccccce------------------eee---ccceee
Confidence 000112223334566667777764 2334444333322222111100 000 112356
Q ss_pred EEEEEEEEeCCCCCCCCCCccEEEEEEEeccc-CCCCC-----------cceEEEEEEEEEEEEcccccccCCCCCCcEE
Q 039285 624 FLQGNITRDNTKFVNGAIVGERNVFQVDQGLG-IGSKF-----------PFFNRHQLTLTRFFQLKQVEEGANKPPPPVL 691 (813)
Q Consensus 624 ~l~~~~t~D~rD~~~~Pt~G~~~~~~~e~~~~-lg~d~-----------~~f~k~~~~~~~y~~l~~~~~~~~~~~~~vl 691 (813)
.+.+++++... .+.-.+.+.+.++++++ +|++. ..|.|..+.+.++.|+... +..+.+
T Consensus 205 ~~~lgl~~~~~----~~~g~~~~~l~~~~G~~~~ga~~~~~~~~~~~~~~~f~k~~l~~~~~~~~~~~------~~~~~~ 274 (404)
T PF03865_consen 205 SLELGLNHSRY----LGGGVLSANLSYSQGLPWFGAERDPEDADGNGPDSQFTKWSLNASLYQPFQLG------NQPFSY 274 (404)
T ss_dssp EEEEEEEEEEE-----TTEEEEEEEEEEEE-------------------EEEEEE---EEEEEEEEET------TEEEEE
T ss_pred EEEeccceEEE----ecCcEEEEeEEEEeccCccCCcCCchhccCCCcccceEEEEeehhhccceeec------CccEEE
Confidence 66777766542 34334467777777765 33221 1268888888877776421 013556
Q ss_pred EEEEEeeeeecCCCcccccccCCCCccccccCCccCccceeeEEeEEEEEEec----ceeEEEEEeecccCCC
Q 039285 692 VLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPVK----NTHVYAFVEHGNDLGS 760 (813)
Q Consensus 692 ~~r~~~G~~~g~lp~~erF~lGG~~svRGy~~~~ig~G~~~~~~s~Elr~pl~----~~~~~~F~D~G~vw~~ 760 (813)
..++.++|+.+.|+..|+|.+||.++||||+.+++. |+..+.++.|+.+|+. .+..++|+|+|.++..
T Consensus 275 ~~~~~gQys~d~L~ssEq~siGG~~sVRGF~~~~ls-Gd~G~~~rNeLs~~~~~~~~~l~py~g~D~G~v~~~ 346 (404)
T PF03865_consen 275 NSSLSGQYSNDNLYSSEQFSIGGRYSVRGFDESSLS-GDSGWYLRNELSWPFPLGNFSLTPYLGLDYGRVRGN 346 (404)
T ss_dssp EEEEEEEE-SS-SSSSEE--S------TT----S---SS-SS--EESEEEEEEE--SS-EEEEEEEEEEEEES
T ss_pred EEEEEEEECCCCCChhheeccCCCceEcccCCCcee-ecceEEEEEEEEeecCCCCceEEEEEEEEEEEEecC
Confidence 666777888788999999999999999999999996 9999999999998874 3778999999999975
No 14
>PLN03138 Protein TOC75; Provisional
Probab=99.28 E-value=1.5e-10 Score=136.05 Aligned_cols=169 Identities=9% Similarity=-0.026 Sum_probs=101.8
Q ss_pred cCCCCceeeE-----------EeeeecCccceEEEEEE------------EEeccCCcccCChhhHhhhcccC-------
Q 039285 145 AHGLPANIAV-----------QLSKLSGFRKYKLSEIL------------FFDRQRGATVGTEDSFFEMVSLR------- 194 (813)
Q Consensus 145 ~~g~~~~~~~-----------~~~~i~e~~~~~I~~I~------------f~G~~~g~~~~~~~~l~~~l~~~------- 194 (813)
+.|++++|.+ ....|.|++...|++|+ |+|+ ...++.++++.|..+
T Consensus 196 ~tG~F~~V~~~v~~~~dg~v~V~~~i~Eg~~~~I~~I~~i~~~~~~~~~~~~GN----~~fs~~el~~~~~~~e~~~~~~ 271 (796)
T PLN03138 196 SCGMFEKVDLEGKTKPDGTLGLTISFTESTWQSADSFRCINVGLMSQSKPIEMD----EDMTDKEKMEYYRSQEKDYKRR 271 (796)
T ss_pred hcCCceEEEEEEEeCCCCeEEEEEEEEeCCceeeeeeeecccccccccceeeCC----cccCHHHHHHHhhccccccccc
Confidence 5677775544 34468899999999999 9964 333333333333222
Q ss_pred ----------------------CCCcccHHHHHHHHHHHH----HcCCcc-eEEEEEEEcCCCceEEEEEEEeeecccce
Q 039285 195 ----------------------PGGVYTRTQLLKELETLA----TCGMFE-KVDMEAKTKPDGTLGLTISFLESTWQSAE 247 (813)
Q Consensus 195 ----------------------~g~~~~~~~l~~d~~~L~----~~Gyf~-~V~~~~~~~~d~~~~v~i~~~v~e~p~g~ 247 (813)
..+.|++++|++|+++|. ++||.. +|....+. + .+.|++.|.| ++
T Consensus 272 ~~~a~~~~Lp~~v~~e~f~~~~~~gklN~e~Lq~die~I~~~Y~d~GYafa~V~~~~~i--d---~g~Vtl~V~E---G~ 343 (796)
T PLN03138 272 IRKARPCLLPKSVRREVLGMLRDQGKVSARLLQRIRDRVQKWYHDEGYACAQVVNFGNL--N---TNEVVCEVVE---GD 343 (796)
T ss_pred cccccccccchHHHHHHHhhhccCCcCCHHHHHHHHHHHHHHHHhCCCceEEEeccccc--C---CceEEEEEec---cc
Confidence 334699999999999984 499987 88654322 2 2446788874 44
Q ss_pred eEEEeecccccccc--ceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHh-hcCCCCeecHHHHHHHH
Q 039285 248 RIRCINVGLMQQSK--PIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQ-ILKDHGKVSARLLQRIR 324 (813)
Q Consensus 248 ~~k~~~vg~~~~~i--~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~-~lk~g~~~~~~~l~~~~ 324 (813)
+..+ .|- ....| .|+||. .+. .|++-++ .+++|++||...+++++
T Consensus 344 i~~I-~V~-~~drig~~i~GNT--rD~----------------------------VIRREL~~~lkeGd~fN~~~l~~sl 391 (796)
T PLN03138 344 ITKV-VIQ-FQDKLGNVVEGNT--QLP----------------------------IIDRELPKQLRQGHIFNIEAGKQAL 391 (796)
T ss_pred EEEE-EEE-ecccccccccCCc--cCe----------------------------EEeeecccccCCCcccCHHHHHHHH
Confidence 4433 000 00122 355554 221 1222222 15789999999999999
Q ss_pred HHHHHHHHHCCCc-eeEEeeee-eecC--eEEEEEEeecee
Q 039285 325 DRVQKWYHDEGYA-CAQVVNFG-NLNT--REVVCEVVEGDI 361 (813)
Q Consensus 325 ~~I~~~Y~~~GY~-~a~V~~~~-~~~~--~~i~i~I~EG~~ 361 (813)
++|. ..||. +++|.+.. ..++ .+|.++|.|.+.
T Consensus 392 qRL~----~LGlFedV~V~~~Pg~~~p~~VdL~V~VkE~e~ 428 (796)
T PLN03138 392 RNIN----SLALFSNIEVNPRPDEKNEGGIVVEIKLKELEP 428 (796)
T ss_pred HHHH----hCCCCceeEEEeccCCCCCCeEEEEEEEEEccC
Confidence 9874 45885 55665543 2222 346788877554
No 15
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.62 E-value=1.1e-07 Score=81.30 Aligned_cols=72 Identities=22% Similarity=0.300 Sum_probs=57.8
Q ss_pred cccceecC-ccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCc
Q 039285 259 QSKPIEMD-ADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYA 337 (813)
Q Consensus 259 ~~i~i~Gn-~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~ 337 (813)
.+|.|+|| +.+++++|++.| . +++|++|++..+++++++|.++|.+.||+
T Consensus 4 ~~I~i~Gn~~~~~~~~l~~~l----------------------------~-~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~ 54 (78)
T PF07244_consen 4 GEINIEGNLKKFSDEELRREL----------------------------G-LKPGDPFNPEKIEEDIERLQDYYKDKGYF 54 (78)
T ss_dssp EEEEEESE-SSSHHHHHHHCH----------------------------S-S-TTSBECHHHHHHHHHHHHHHHHTTSCS
T ss_pred EEEEEEcCceEeCHHHHHhhc----------------------------C-CCCCCEeCHHHHHHHHHHHHHHHHHcCCc
Confidence 35588998 777776665443 3 78999999999999999999999999999
Q ss_pred eeEEeeeeeecCe--EEEEEEeec
Q 039285 338 CAQVVNFGNLNTR--EVVCEVVEG 359 (813)
Q Consensus 338 ~a~V~~~~~~~~~--~i~i~I~EG 359 (813)
+++|.+....+++ .|++.|+||
T Consensus 55 ~~~V~~~~~~~~~~v~l~~~V~Eg 78 (78)
T PF07244_consen 55 FAKVSPEIDPDDNTVDLTFNVDEG 78 (78)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEC
T ss_pred ceEEEEEEEEcCCEEEEEEEEEeC
Confidence 9999877654433 578888886
No 16
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=98.45 E-value=1e-06 Score=75.34 Aligned_cols=71 Identities=20% Similarity=0.361 Sum_probs=59.9
Q ss_pred eEEEEEEEEeccCCc-ccCChhhHhhhcccCCCCcccHHHHHHHHHHHH----HcCCcc-eEEEEEEEcCCCceEEEEEE
Q 039285 165 YKLSEILFFDRQRGA-TVGTEDSFFEMVSLRPGGVYTRTQLLKELETLA----TCGMFE-KVDMEAKTKPDGTLGLTISF 238 (813)
Q Consensus 165 ~~I~~I~f~G~~~g~-~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~----~~Gyf~-~V~~~~~~~~d~~~~v~i~~ 238 (813)
++|.+|.|.| + +.++++.|++.|.+++|+.|+++++++++++|. ++||+. +|+++....+ + .+.|+|
T Consensus 1 ~~i~~I~i~G----n~~~~~~~~l~~~l~~~~G~~~~~~~i~~~~~~l~~~y~~~Gy~~~~V~~~~~~~~-~--~v~l~~ 73 (78)
T PF07244_consen 1 YRIGEINIEG----NLKKFSDEELRRELGLKPGDPFNPEKIEEDIERLQDYYKDKGYFFAKVSPEIDPDD-N--TVDLTF 73 (78)
T ss_dssp CEEEEEEEES----E-SSSHHHHHHHCHSS-TTSBECHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEET-T--EEEEEE
T ss_pred CEEEEEEEEc----CceEeCHHHHHhhcCCCCCCEeCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEEcC-C--EEEEEE
Confidence 5799999995 4 568888899999999999999999999999998 799966 9988876555 3 588999
Q ss_pred Eeee
Q 039285 239 LEST 242 (813)
Q Consensus 239 ~v~e 242 (813)
.|+|
T Consensus 74 ~V~E 77 (78)
T PF07244_consen 74 NVDE 77 (78)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9875
No 17
>TIGR00992 3a0901s03IAP75 chloroplast envelope protein translocase, IAP75 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the TOC IAP75 protein.
Probab=98.33 E-value=4.9e-06 Score=100.49 Aligned_cols=188 Identities=10% Similarity=-0.049 Sum_probs=121.7
Q ss_pred eeccchhhccccccccccccCCCCceeeEEee----------eecCccceEEEE-EEEEecc----CCcccCChhhHhhh
Q 039285 126 VFGTELAIADEDNESQDWDAHGLPANIAVQLS----------KLSGFRKYKLSE-ILFFDRQ----RGATVGTEDSFFEM 190 (813)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------~i~e~~~~~I~~-I~f~G~~----~g~~~~~~~~l~~~ 190 (813)
.+++..++.|.. ..| +.|+|.||.+... .+.| +|.|++ |+|+|+. .++...+++.+.+.
T Consensus 137 ~~t~~~~~~d~~---~i~-~tG~F~~V~~~~~~~~~Gv~v~~~V~e--nP~~~~~v~~~g~~~~~~~~~~~lp~~~l~e~ 210 (718)
T TIGR00992 137 LGTTISFAESVW---AIA-DRFRCINVGLMPQSKPLEMDVDMEVKE--KPEFTRRLEIRYKRRIAEARPCLLPQEVVDET 210 (718)
T ss_pred cccHHHHHHHHH---HHH-HcEEeeeeEEeeccCCCceEEEEEEec--CCEEEEEEEEeecccccccccccCCHHHHHHH
Confidence 345666666654 447 7899998766433 3333 577888 9999864 24556778888899
Q ss_pred cccCCC-CcccHHHHHHHHHHHH----HcCCcc-eEEEEEEEcCCCceEEEEEEEeeecccceeEEEeecccccccccee
Q 039285 191 VSLRPG-GVYTRTQLLKELETLA----TCGMFE-KVDMEAKTKPDGTLGLTISFLESTWQSAERIRCINVGLMQQSKPIE 264 (813)
Q Consensus 191 l~~~~g-~~~~~~~l~~d~~~L~----~~Gyf~-~V~~~~~~~~d~~~~v~i~~~v~e~p~g~~~k~~~vg~~~~~i~i~ 264 (813)
+..+.| +.++...|++++++|. ++||.. +|....+. +. . .|+|.|.|++ ..++++ ..|.++
T Consensus 211 ~~~~~G~~~ln~~~L~~~~~~I~~~Y~~~GY~~A~V~~~~~~--~~--~-~V~l~V~EG~-i~~I~V-------~~i~~~ 277 (718)
T TIGR00992 211 FGMLYGQGIVSARLLQEIRDRVQEWYHNEGYACAQVVNFGNL--NT--D-EVVCEVVEGD-ITNLQI-------QFFDKL 277 (718)
T ss_pred hccccCCeecCHHHHHHHHHHHHHHHHHCCceeEEEeccCcC--CC--C-EEEEEEeccc-eeEEEE-------EEeccc
Confidence 999999 9999999999888874 499986 77544222 21 2 4777777543 235544 122345
Q ss_pred cCc---cCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHh-hcCCCCeecHHHHHHHHHHHHHHHHHCCCceeE
Q 039285 265 MDA---DMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQ-ILKDHGKVSARLLQRIRDRVQKWYHDEGYACAQ 340 (813)
Q Consensus 265 Gn~---~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~-~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~~a~ 340 (813)
||. ...+. .+++.+. .+++|++|+.+++++++++|.+.. +|..++
T Consensus 278 Gn~~~G~T~~~----------------------------vI~Rel~~~lk~G~~fn~~~Le~~~~rL~~lg---~F~~V~ 326 (718)
T TIGR00992 278 GNVVEGNTRDP----------------------------VVTRELPKQLKPGDVFNIEAGKTALQNINSLG---LFSNIE 326 (718)
T ss_pred CccccCccchH----------------------------HHHHHHHhccCCCCcCCHHHHHHHHHHHHcCC---Ccccce
Confidence 664 11111 2233332 258899999999999999886553 455788
Q ss_pred Eeeeeee-cCe--EEEEEEeeceeee
Q 039285 341 VVNFGNL-NTR--EVVCEVVEGDITQ 363 (813)
Q Consensus 341 V~~~~~~-~~~--~i~i~I~EG~~~~ 363 (813)
|.+.... +++ .|+|+|.|++...
T Consensus 327 V~~~p~~~~~g~v~V~V~V~E~~~~s 352 (718)
T TIGR00992 327 VNPRPDEMNEGEIIVEIKLKELEQKS 352 (718)
T ss_pred eeccCCCCCCCeEEEEEEEEECCCCc
Confidence 8655432 333 4778888887653
No 18
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=98.22 E-value=4.3e-06 Score=71.37 Aligned_cols=58 Identities=22% Similarity=0.336 Sum_probs=44.8
Q ss_pred HHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCceeEE-eeeeeecCeEEEEEEeec
Q 039285 301 VHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYACAQV-VNFGNLNTREVVCEVVEG 359 (813)
Q Consensus 301 ~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~~a~V-~~~~~~~~~~i~i~I~EG 359 (813)
.+++++++ ..|+.++.+.+++..++|+++|+++||..++| .|.+++.++.++|.|.||
T Consensus 18 ~l~~~~~~-~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i~~G~l~i~V~eG 76 (76)
T PF08479_consen 18 ELQAILAP-YIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDISDGVLTIRVVEG 76 (76)
T ss_dssp HHHHHHGG-GTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEETTSEEEEEEE--
T ss_pred HHHHHHHH-hcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeecCCCEEEEEEEcC
Confidence 34445542 45999999999999999999999999999998 566788899999999987
No 19
>COG2831 FhaC Hemolysin activation/secretion protein [Intracellular trafficking and secretion]
Probab=96.37 E-value=0.068 Score=62.95 Aligned_cols=153 Identities=12% Similarity=0.100 Sum_probs=106.6
Q ss_pred cceEEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHH----HHcCCcc-eEEEEEEEcCCCceEEEEE
Q 039285 163 RKYKLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETL----ATCGMFE-KVDMEAKTKPDGTLGLTIS 237 (813)
Q Consensus 163 ~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L----~~~Gyf~-~V~~~~~~~~d~~~~v~i~ 237 (813)
+.+.|++|+++| ++...+..+.+.+.--.|..++.+.|+.-.++| .++||.- .|-+-..+..+| .| .
T Consensus 71 ~~f~I~~i~l~g----~~~~~~~~l~~~~~~~~g~~l~~~~l~~l~~~lt~~y~~~GYvtsra~lp~Q~i~~G--~l--~ 142 (554)
T COG2831 71 PCFPINRIELEG----NTLLDALELQAILAPYLGRCLGLADLNQLASALTNLYIDRGYVTTRALLPPQDLKSG--TL--R 142 (554)
T ss_pred ceEEEEEEEEeC----CcccChHHHHHhhHHhhCCccCHHHHHHHHHHHHHHHHhCCcEEEEEEcCCCcccCC--eE--E
Confidence 468999999996 455666677777776679999988887665554 4599998 765443444555 34 4
Q ss_pred EEeeecccceeEEEeeccccccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecH
Q 039285 238 FLESTWQSAERIRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSA 317 (813)
Q Consensus 238 ~~v~e~p~g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~ 317 (813)
+.|.| |.. .+|.|+|++..... .+..++. ..++++++.
T Consensus 143 l~Vve---G~i----------~~i~i~g~~~~~~~----------------------------~~~~~~p-~~~g~~Ln~ 180 (554)
T COG2831 143 LQVVE---GRI----------EDIRITGDSDLRSV----------------------------ALRSLFP-AHRGDPLNL 180 (554)
T ss_pred EEEec---eEe----------eeEEEcCCCccchh----------------------------hHHhhcc-ccCCCCCCH
Confidence 55543 421 34468888765432 2334454 477999999
Q ss_pred HHHHHHHHHHHHHHHHCCCceeEEeeeeeecCeEEEEEEeeceeeeeEEe
Q 039285 318 RLLQRIRDRVQKWYHDEGYACAQVVNFGNLNTREVVCEVVEGDITQLVVQ 367 (813)
Q Consensus 318 ~~l~~~~~~I~~~Y~~~GY~~a~V~~~~~~~~~~i~i~I~EG~~~~i~i~ 367 (813)
.+|++..+.+...-..+ ..+++.|-...-..+|.|++.+++...+.+.
T Consensus 181 ~~lEq~l~~l~~~P~~q--a~~~l~pg~~~G~S~l~i~~~~~~~~~~~~~ 228 (554)
T COG2831 181 RDLEQGLELLNRLPGVQ--ADAELVPGSEPGESDLVIKVQQGKPWRVSAS 228 (554)
T ss_pred HHHHHHHHHhhhCcccc--ceeEEccCCCCCccEEEEEeeeCCCeEEEEE
Confidence 99999999998887776 6777766654434479999999888877433
No 20
>PF08479 POTRA_2: POTRA domain, ShlB-type; InterPro: IPR013686 The POTRA domain (for polypeptide-transport-associated domain) is found towards the N terminus of ShlB family proteins (IPR005565 from INTERPRO). ShlB is important in the secretion and activation of the haemolysin ShlA. It has been postulated that the POTRA domain has a chaperone-like function over ShlA; it may fold back into the C-terminal beta-barrel channel []. ; PDB: 2X8X_X 2QDZ_A 3NJT_A 3MC8_A 3MC9_B.
Probab=93.33 E-value=0.64 Score=39.41 Aligned_cols=61 Identities=20% Similarity=0.254 Sum_probs=43.5
Q ss_pred EEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHH----HHcCCcc-eEEEEEEEcCCC
Q 039285 166 KLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETL----ATCGMFE-KVDMEAKTKPDG 230 (813)
Q Consensus 166 ~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L----~~~Gyf~-~V~~~~~~~~d~ 230 (813)
.|++|.|.| +...+.+.+.+.+.-..|..++.+.|++..++| .++||.- +|.+......++
T Consensus 2 ~i~~i~~~G----~~~~~~~~l~~~~~~~~g~~l~~~~l~~~~~~l~~~y~~~GY~~s~v~~p~q~i~~G 67 (76)
T PF08479_consen 2 PIKGIRFEG----NTLLPEEELQAILAPYIGRCLTLADLQQLADALTNYYREKGYITSRVYLPPQDISDG 67 (76)
T ss_dssp ---EEEEES-----TSSSCCHHHHHHGGGTTSBB-HHHHHHHHHHHHHHHHHTT-TT-EEEEEEEEETTS
T ss_pred CeEEEEEEC----CCcCCHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHcCceEEEEEeCCeecCCC
Confidence 589999995 556777788888887789999999998877666 4599998 887765556777
No 21
>COG0729 Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=92.91 E-value=0.28 Score=58.02 Aligned_cols=82 Identities=22% Similarity=0.295 Sum_probs=65.9
Q ss_pred EeeeecCccceEEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHHHHcCCcceEEEEEEEc---CCCc
Q 039285 155 QLSKLSGFRKYKLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETLATCGMFEKVDMEAKTK---PDGT 231 (813)
Q Consensus 155 ~~~~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~~~Gyf~~V~~~~~~~---~d~~ 231 (813)
.-..++.|.++....|+|+ +.+++.++.+..++.+++|..|+++.|.+-.++|.+++||+.|.++.... +|+
T Consensus 190 ~~~~~dsG~~y~~g~v~~~----g~~r~~~~~~~~~~~~~~G~~Y~~~~l~~~~~rl~~~~~F~sv~v~~~~~~~~~~~- 264 (594)
T COG0729 190 VDLNYDSGRRYRFGPVTVE----GSQRIDEEYLQNLVPFKYGLPYDPEDLAELNQRLRQTGYFSSVVVQPADKQAGPDG- 264 (594)
T ss_pred EEEeecccceEEeCcEEEc----cceecCHHHHhhccccCCCCcCCHHHHHHHHHHHhhcCceeeEEEecCccccCcCc-
Confidence 3345788999999999999 56778899999999999999999999999999999999999765554322 333
Q ss_pred eEEEEEEEeee
Q 039285 232 LGLTISFLEST 242 (813)
Q Consensus 232 ~~v~i~~~v~e 242 (813)
.+-|.+.+.|
T Consensus 265 -~~pv~v~~~~ 274 (594)
T COG0729 265 -LLPVKVSVSE 274 (594)
T ss_pred -eeceEEEecc
Confidence 3566676664
No 22
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=86.00 E-value=1.1 Score=49.56 Aligned_cols=8 Identities=63% Similarity=1.045 Sum_probs=3.5
Q ss_pred CCCCCccc
Q 039285 115 DGFGGGGF 122 (813)
Q Consensus 115 ~~~~~~~~ 122 (813)
+++++||+
T Consensus 85 ~~~~g~gs 92 (641)
T KOG3915|consen 85 GGGGGGGS 92 (641)
T ss_pred CCCCCCcc
Confidence 33444444
No 23
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=83.82 E-value=0.33 Score=56.47 Aligned_cols=23 Identities=48% Similarity=0.968 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCcccc
Q 039285 101 SGGDGFGGGGGGGGDGFGGGGFW 123 (813)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~ 123 (813)
|||.|+|+++|||.|.|.+.|||
T Consensus 534 g~gr~rg~~~ggg~grg~~r~~~ 556 (556)
T PF05918_consen 534 GGGRGRGRRSGGGRGRGRGRGFW 556 (556)
T ss_dssp -----------------------
T ss_pred CCCCCCCCCCCCCCCCcccccCC
Confidence 34444444433332334445777
No 24
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=79.23 E-value=4.7 Score=33.11 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=45.4
Q ss_pred EEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHHHHcCCcceEEEEEEEcCCCceEEEEEEE
Q 039285 166 KLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETLATCGMFEKVDMEAKTKPDGTLGLTISFL 239 (813)
Q Consensus 166 ~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~~~Gyf~~V~~~~~~~~d~~~~v~i~~~ 239 (813)
+|++|.|.| +...+++.|.+.+.+..|..+-.-.+.+-.++|.+..+.++|.++.. -|+ .+.|.+.
T Consensus 2 ~v~~I~V~G----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~p~V~~v~V~r~-~P~---~l~I~V~ 67 (69)
T PF08478_consen 2 RVKKIEVSG----NSYLSKEEILQALGIQKGKNLFSLDLKKIEQRLEKLPWVKSVSVSRR-FPN---TLEIKVK 67 (69)
T ss_dssp S--EEEEES-----SSS-HHHHHHHHCTTSTTTCCCSHHHHHHHCCCCTTTEEEEEEEEE-TTT---EEEEEEE
T ss_pred CccEEEEEC----CCcCCHHHHHHHhCcCCCCeEEEECHHHHHHHHHcCCCEEEEEEEEe-CCC---EEEEEEE
Confidence 588999994 67789999999999988877775556665667777888888877753 455 3444443
No 25
>PF08478 POTRA_1: POTRA domain, FtsQ-type; InterPro: IPR013685 FtsQ/DivIB bacterial division proteins (IPR005548 from INTERPRO) contain an N-terminal POTRA domain (for polypeptide-transport-associated domain). This is found in different types of proteins, usually associated with a transmembrane beta-barrel. FtsQ/DivIB may have chaperone-like roles, which has also been postulated for the POTRA domain in other contexts []. ; PDB: 2ALJ_A 2VH1_B 3J00_Z 2VH2_B.
Probab=59.72 E-value=25 Score=28.73 Aligned_cols=60 Identities=23% Similarity=0.304 Sum_probs=43.0
Q ss_pred eeecCc--cHHHHHHhccccCCCCCccChHHHHHHHHHHhcCCCceeeEeeecCCCCCCCeEEEEEEEEE
Q 039285 375 VVEGNT--QLAVVKRELPKQLRQGNVFNIEAGKQALRNINSLSLFSNIEVNPRPDEKNEGGIIVEIKLKE 442 (813)
Q Consensus 375 ~i~Gnt--~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E 442 (813)
.|.||. ....|...+. +..|+.+=.-.+.+..++|..+.+.++|.|.-.- |++ |.|.|+|
T Consensus 7 ~V~G~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~~~p~V~~v~V~r~~----P~~--l~I~V~E 68 (69)
T PF08478_consen 7 EVSGNSYLSKEEILQALG--IQKGKNLFSLDLKKIEQRLEKLPWVKSVSVSRRF----PNT--LEIKVKE 68 (69)
T ss_dssp EEES-SSS-HHHHHHHHC--TTSTTTCCCSHHHHHHHCCCCTTTEEEEEEEEET----TTE--EEEEEEE
T ss_pred EEECCCcCCHHHHHHHhC--cCCCCeEEEECHHHHHHHHHcCCCEEEEEEEEeC----CCE--EEEEEEe
Confidence 467873 5777888888 8888877777777777888889999999986542 233 5566676
No 26
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=58.49 E-value=7.3 Score=41.95 Aligned_cols=10 Identities=50% Similarity=1.009 Sum_probs=4.1
Q ss_pred CCCCCcccce
Q 039285 115 DGFGGGGFWR 124 (813)
Q Consensus 115 ~~~~~~~~~~ 124 (813)
+|+|+||=|.
T Consensus 376 gG~GGGggyq 385 (465)
T KOG3973|consen 376 GGRGGGGGYQ 385 (465)
T ss_pred CCCCCCCCCc
Confidence 3334444444
No 27
>PRK05529 cell division protein FtsQ; Provisional
Probab=57.96 E-value=34 Score=36.29 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=48.5
Q ss_pred ccceEEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHHHHcCCcceEEEEEEEcCCCceEEEEEEEe
Q 039285 162 FRKYKLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETLATCGMFEKVDMEAKTKPDGTLGLTISFLE 240 (813)
Q Consensus 162 ~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~~~Gyf~~V~~~~~~~~d~~~~v~i~~~v 240 (813)
-+.+.|++|++.| +..+++++|.+.+.+..|..+-.-.++.-.+.|.+.-+.++|+++.. -|+ .+.|++.+
T Consensus 58 Sp~~~v~~I~V~G----n~~vs~~eI~~~~~~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~-~P~---tl~I~V~E 128 (255)
T PRK05529 58 SPLLALRSIEVAG----NMRVKPQDIVAALRDQFGKPLPLVDPETVRKKLAAFPLIRSYSVESK-PPG---TIVVRVVE 128 (255)
T ss_pred CCceEEEEEEEEC----CccCCHHHHHHHhcccCCCcceeECHHHHHHHHhcCCCEeEEEEEEe-CCC---EEEEEEEE
Confidence 3567899999995 56789999999988888876544334444456667788887777653 344 34455544
No 28
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=55.70 E-value=9.5 Score=40.68 Aligned_cols=7 Identities=43% Similarity=0.966 Sum_probs=3.4
Q ss_pred CCCcccc
Q 039285 117 FGGGGFW 123 (813)
Q Consensus 117 ~~~~~~~ 123 (813)
||..|.|
T Consensus 265 GGasg~W 271 (271)
T COG1512 265 GGASGSW 271 (271)
T ss_pred CCCCCCC
Confidence 3333666
No 29
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=54.60 E-value=4.1 Score=47.68 Aligned_cols=19 Identities=37% Similarity=0.445 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCcccceE
Q 039285 107 GGGGGGGGDGFGGGGFWRK 125 (813)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~ 125 (813)
|.|.|+++|||.|+|++|.
T Consensus 536 gr~rg~~~ggg~grg~~r~ 554 (556)
T PF05918_consen 536 GRGRGRRSGGGRGRGRGRG 554 (556)
T ss_dssp -------------------
T ss_pred CCCCCCCCCCCCCCccccc
Confidence 3333333345555677765
No 30
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=50.24 E-value=11 Score=45.86 Aligned_cols=7 Identities=0% Similarity=-0.130 Sum_probs=2.9
Q ss_pred CCccccc
Q 039285 18 STFSRRK 24 (813)
Q Consensus 18 ~~~~~~~ 24 (813)
.|+++-|
T Consensus 1164 ~PPKmar 1170 (1282)
T KOG0921|consen 1164 GPPKMAR 1170 (1282)
T ss_pred CCccccc
Confidence 3444433
No 31
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=49.97 E-value=21 Score=40.02 Aligned_cols=8 Identities=13% Similarity=0.131 Sum_probs=4.1
Q ss_pred EEEEEEEE
Q 039285 166 KLSEILFF 173 (813)
Q Consensus 166 ~I~~I~f~ 173 (813)
+|..+.|.
T Consensus 186 kVAsF~i~ 193 (641)
T KOG3915|consen 186 KVASFTIE 193 (641)
T ss_pred eeeEEEec
Confidence 35555555
No 32
>PTZ00146 fibrillarin; Provisional
Probab=39.19 E-value=24 Score=38.16 Aligned_cols=8 Identities=0% Similarity=0.227 Sum_probs=3.5
Q ss_pred HHHHhcCC
Q 039285 408 LRNINSLS 415 (813)
Q Consensus 408 ~~~L~~~g 415 (813)
++.|...|
T Consensus 256 v~~L~~~G 263 (293)
T PTZ00146 256 VQKLKKEG 263 (293)
T ss_pred HHHHHHcC
Confidence 34454444
No 33
>PF11854 DUF3374: Protein of unknown function (DUF3374); InterPro: IPR020016 Members of this protein family are integral proteins of the bacterial outer membrane, associated with multi-haem c-type cytochromes involved in electron transfer [, ]. The MtrB protein of Shewanella oneidensis MR-1 (SO1776) has been shown to form a complex with 1:1:1 stochiometry with the small, periplasmic decahaem cytochrome MtrA and large, surface-exposed decahaem cytochrome MtrC.
Probab=38.92 E-value=3.3e+02 Score=33.07 Aligned_cols=65 Identities=11% Similarity=0.080 Sum_probs=41.9
Q ss_pred CcceEEEEEeeccccCccccCCCCCCcCCceeEeeeeeEEEEeEecccCceEEEEEEEEEEEeec
Q 039285 523 RNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDRAGLKANITENFTRQSKFTYGLVMEEITTRD 587 (813)
Q Consensus 523 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~G~~~~l~~~~~~~~~~~~g~~~~~~~~~~ 587 (813)
..++++.+.-++...+............+.|......+.+.+.|.++++..+.+.|.||+++..|
T Consensus 536 ~kL~lg~dYsys~~~s~~~~~~~~~~~~pd~~~~~h~l~~~~~y~ls~~~~lrl~y~yEr~~~~D 600 (637)
T PF11854_consen 536 DKLSLGLDYSYSDSDSDTDVTQGGSGPYPDYYSRQHNLNLYARYQLSKNMSLRLDYRYERYSDTD 600 (637)
T ss_pred ccEEEeeeEEEecCccceEeecccccCCCCceeeEEEEEEEEEEEeCCCeEEEEEEEEEeeeccc
Confidence 45666666533332221111000012356677788888999999999999999999999987544
No 34
>PRK05529 cell division protein FtsQ; Provisional
Probab=32.77 E-value=1e+02 Score=32.65 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=43.4
Q ss_pred eeecC--ccHHHHHHhccccCCCCCccChHHHHHHHHHHhcCCCceeeEeeecCCCCCCCeEEEEEEEEEccC
Q 039285 375 VVEGN--TQLAVVKRELPKQLRQGNVFNIEAGKQALRNINSLSLFSNIEVNPRPDEKNEGGIIVEIKLKELDQ 445 (813)
Q Consensus 375 ~i~Gn--t~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E~~~ 445 (813)
.|+|| ...+.|...+. +..|+.+-.-.+++..++|..+.+.++|++.-.. |++ |.|+|+|..+
T Consensus 67 ~V~Gn~~vs~~eI~~~~~--~~~g~~l~~vd~~~~~~~l~~~P~V~sa~V~r~~----P~t--l~I~V~Er~p 131 (255)
T PRK05529 67 EVAGNMRVKPQDIVAALR--DQFGKPLPLVDPETVRKKLAAFPLIRSYSVESKP----PGT--IVVRVVERVP 131 (255)
T ss_pred EEECCccCCHHHHHHHhc--ccCCCcceeECHHHHHHHHhcCCCEeEEEEEEeC----CCE--EEEEEEEeee
Confidence 35666 35667877787 7888876555556666777888899999986543 233 6677888663
No 35
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=31.29 E-value=32 Score=35.28 Aligned_cols=19 Identities=21% Similarity=0.305 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHCCCce
Q 039285 320 LQRIRDRVQKWYHDEGYAC 338 (813)
Q Consensus 320 l~~~~~~I~~~Y~~~GY~~ 338 (813)
+.+..+.|.++..+-|=-.
T Consensus 154 ~aEfrdaLaelle~~G~~~ 172 (263)
T KOG3074|consen 154 IAEFRDALAELLEDFGEGD 172 (263)
T ss_pred HHHHHHHHHHHHHHhCCcc
Confidence 4445555666666655433
No 36
>KOG0815 consensus 60S acidic ribosomal protein P0 [Translation, ribosomal structure and biogenesis]
Probab=28.84 E-value=49 Score=33.79 Aligned_cols=47 Identities=26% Similarity=0.441 Sum_probs=36.6
Q ss_pred eecCccceEEEEEEEEeccCCccc-CChhhHhhhcccCC-------------CCcccHHHHHH
Q 039285 158 KLSGFRKYKLSEILFFDRQRGATV-GTEDSFFEMVSLRP-------------GGVYTRTQLLK 206 (813)
Q Consensus 158 ~i~e~~~~~I~~I~f~G~~~g~~~-~~~~~l~~~l~~~~-------------g~~~~~~~l~~ 206 (813)
||..|..-.|++|.+. +.|++. -+|..|+.+|.++| |..|+|+.|+-
T Consensus 146 KIsrGtiEIlsdV~li--k~GDKVGaSEAtLLnmL~IsPFsyGLvv~qVyDnGsiy~pevLDi 206 (245)
T KOG0815|consen 146 KISRGTIEILSDVQLI--KTGDKVGASEATLLNMLNISPFSYGLVVQQVYDNGSIYNPEVLDI 206 (245)
T ss_pred eeecceEEecccceee--ccCCccChhHHHHHhhhCCCccccceEEEEEecCCcccChhhcCC
Confidence 5677777778888887 346665 67889999999887 78899888763
No 37
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=28.54 E-value=1.5e+02 Score=31.65 Aligned_cols=68 Identities=13% Similarity=0.242 Sum_probs=48.6
Q ss_pred eEEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHHHHcCCcceEEEEEEEcCCCceEEEEEEEe
Q 039285 165 YKLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETLATCGMFEKVDMEAKTKPDGTLGLTISFLE 240 (813)
Q Consensus 165 ~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~~~Gyf~~V~~~~~~~~d~~~~v~i~~~v 240 (813)
..|++|.++| +..++++.|++.+.+..+..+=.-.+++..+.|.+.-+.++|++.- .-|++ +.|.+.+
T Consensus 60 ~~i~~v~v~G----n~~~s~~~I~~~~~l~~~~~~~~ld~~~~~~~i~~~PwVk~a~V~r-~~Pnt---v~I~v~E 127 (269)
T COG1589 60 FPIRKVSVSG----NNQVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRR-QFPNT---LEIEVVE 127 (269)
T ss_pred ccceEEEEec----CcccCHHHHHHHhhhccCCceEEEcHHHHHHHHHhCCCeEEEEEEE-eCCCc---EEEEEEE
Confidence 3699999995 5666788999998888887665556666666777778888777765 45664 4444444
No 38
>PF10082 DUF2320: Uncharacterized protein conserved in bacteria (DUF2320); InterPro: IPR018759 This domain has no known function.
Probab=25.90 E-value=9.3e+02 Score=26.63 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=24.3
Q ss_pred EeeeeeEEEEeEecccCceEEEEEEEEEE
Q 039285 555 VDRAGLKANITENFTRQSKFTYGLVMEEI 583 (813)
Q Consensus 555 ~~~~G~~~~l~~~~~~~~~~~~g~~~~~~ 583 (813)
.+.+.+++++.|.+.+++.+++++.|+..
T Consensus 331 D~~~~~~~~~~y~~~r~~~~~~~y~~~~~ 359 (381)
T PF10082_consen 331 DDTYSAGLGLTYRLNRWLSLSAGYRYEDR 359 (381)
T ss_pred eeEEEEEEEEEEEecCCEEEEEEEEEEEe
Confidence 45667888999999999999999988764
No 39
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=23.53 E-value=54 Score=33.76 Aligned_cols=9 Identities=22% Similarity=0.072 Sum_probs=4.1
Q ss_pred eEEEEEEEE
Q 039285 165 YKLSEILFF 173 (813)
Q Consensus 165 ~~I~~I~f~ 173 (813)
.+|.+|-.-
T Consensus 50 lKIaE~g~~ 58 (263)
T KOG3074|consen 50 LKIAEVGAG 58 (263)
T ss_pred EEEEEeccC
Confidence 445544443
No 40
>KOG2602 consensus Predicted cell surface protein homologous to bacterial outer membrane proteins [General function prediction only]
Probab=22.99 E-value=2e+02 Score=32.81 Aligned_cols=73 Identities=19% Similarity=0.289 Sum_probs=43.8
Q ss_pred EEEEEEEEeccCCcccCChhhHhhhccc-CCCCcccHHHHH--HHHHHHHHcCCcceEEEEEEE--cCC-CceEEEEEEE
Q 039285 166 KLSEILFFDRQRGATVGTEDSFFEMVSL-RPGGVYTRTQLL--KELETLATCGMFEKVDMEAKT--KPD-GTLGLTISFL 239 (813)
Q Consensus 166 ~I~~I~f~G~~~g~~~~~~~~l~~~l~~-~~g~~~~~~~l~--~d~~~L~~~Gyf~~V~~~~~~--~~d-~~~~v~i~~~ 239 (813)
+|..|.|.| ..+...+.|.+.+.+ .....+.+-.+. .....|.+.|.|+.|.+.++. .+| .+....|+|.
T Consensus 37 ~v~~V~v~G----l~~Tkdd~I~k~v~~~~ka~nl~el~~~s~~a~~nL~~l~iF~~v~~~iD~~~g~~~~p~~~~Vt~~ 112 (457)
T KOG2602|consen 37 RVDHVIVSG----LERTKDDFIMKEVDLVFKAKNLQELLLASHEAASNLRALGIFDSVNILIDTKEGSDALPGGLVVTFL 112 (457)
T ss_pred eeeEEEecc----ccccchHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHhcccccceeeeccccCCCCCCCceeEEEE
Confidence 689999996 456677777776642 233333333332 234567889999977666543 111 1124667787
Q ss_pred eee
Q 039285 240 EST 242 (813)
Q Consensus 240 v~e 242 (813)
|.|
T Consensus 113 v~E 115 (457)
T KOG2602|consen 113 VTE 115 (457)
T ss_pred eee
Confidence 775
Done!