Query 039285
Match_columns 813
No_of_seqs 369 out of 2314
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 13:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039285.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039285hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qdz_A TPSB transporter FHAC; 100.0 2.5E-43 8.6E-48 413.2 49.3 459 246-813 56-554 (554)
2 3mc9_A ALR2269 protein; polype 99.9 2.2E-27 7.4E-32 257.3 18.0 239 159-444 56-308 (316)
3 2x8x_X TLR1789 protein, OMP85; 99.9 7.2E-25 2.5E-29 227.5 28.7 228 162-445 2-235 (235)
4 3efc_A OMP85, outer membrane p 99.9 2.8E-26 9.4E-31 257.2 13.2 252 125-429 106-390 (395)
5 3efc_A OMP85, outer membrane p 99.9 5.4E-24 1.8E-28 238.6 21.7 260 139-448 46-332 (395)
6 2qdf_A OMP85, outer membrane p 99.9 1.8E-23 6.3E-28 229.0 23.7 270 126-448 37-333 (335)
7 2qdf_A OMP85, outer membrane p 99.8 1.4E-19 4.8E-24 198.1 22.7 225 164-448 7-252 (335)
8 3q6b_A Outer membrane protein 99.8 1.2E-18 4.3E-23 174.7 14.6 152 245-442 31-189 (189)
9 3q6b_A Outer membrane protein 99.2 3.6E-10 1.2E-14 112.9 18.1 153 158-358 28-189 (189)
10 2x8x_X TLR1789 protein, OMP85; 99.1 2.4E-09 8.1E-14 110.3 17.7 180 126-360 34-234 (235)
11 3mc9_A ALR2269 protein; polype 98.7 4.9E-08 1.7E-12 105.3 13.1 145 244-444 57-220 (316)
12 2qdz_A TPSB transporter FHAC; 98.7 2.5E-06 8.4E-11 99.2 27.7 267 159-534 50-335 (554)
13 2l6f_A Focal adhesion kinase 1 48.0 5.4 0.00019 38.8 0.0 12 97-108 176-187 (215)
14 2vh1_A FTSQ, cell division pro 41.0 49 0.0017 32.4 7.0 66 167-240 1-69 (220)
15 2vh2_A FTSQ, cell division pro 32.6 51 0.0017 33.3 5.6 71 162-240 23-95 (255)
No 1
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=100.00 E-value=2.5e-43 Score=413.15 Aligned_cols=459 Identities=14% Similarity=0.122 Sum_probs=331.2
Q ss_pred ceeEEEeeccccccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHH
Q 039285 246 AERIRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRD 325 (813)
Q Consensus 246 g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~ 325 (813)
+++++| .+|.|+||..+++++|.+ +++ .+.|++|+.+.|+++++
T Consensus 56 g~~~~i-------~~I~~~G~~~~~~~~l~~----------------------------~~~-~~~G~~~~~~~l~~~~~ 99 (554)
T 2qdz_A 56 GHTVTV-------HAVDLDFGVEGRLFDPAP----------------------------LVQ-DYLNRPLDNEQLFLLVK 99 (554)
T ss_dssp CCSSSS-------CCEEEECCSSSCCCSCST----------------------------TST-TSSSSCBCSTTHHHHHH
T ss_pred CceEEE-------EEEEEECCccCCHHHHHH----------------------------HhH-hhcCCCCCHHHHHHHHH
Confidence 777764 677899998877655433 233 46799999999999999
Q ss_pred HHHHHHHHCCCceeEEe-eeeeecCeEEEEEEeeceeeeeEEeeeccCCceeecC--ccHHHHHH---hccccCCCCCcc
Q 039285 326 RVQKWYHDEGYACAQVV-NFGNLNTREVVCEVVEGDITQLVVQFQDKLGNVVEGN--TQLAVVKR---ELPKQLRQGNVF 399 (813)
Q Consensus 326 ~I~~~Y~~~GY~~a~V~-~~~~~~~~~i~i~I~EG~~~~i~i~~i~~~G~~i~Gn--t~~~vI~r---~l~~~l~~G~~y 399 (813)
+|+++|.++||++|+|. +.++++++.|+|.|+||++..| .|.|| +++.+|++ +++ +++|++|
T Consensus 100 ~i~~~y~~~GY~~a~v~~~~~~~~~g~l~i~v~eG~i~~I----------~i~G~~~~~~~~l~~~~~~~~--~~~G~~~ 167 (554)
T 2qdz_A 100 ALSAALYDRGYATSIVTFVPPGVVDGVLKLKVEWGRIKGW----------LIDGKPLEGTRDRMMVFSAMP--GWQDKVL 167 (554)
T ss_dssp HHHHHHHHTTCTTCEEEEEEEEEETTEEEEEEECCEEEEE----------EETTEECCSHHHHHHHHHHST--TCTTCBC
T ss_pred HHHHHHHHcCceeeeEEcccccccCCEEEEEEEeEEEEEE----------EECCCCccchhhhhhhhhhcc--ccCCCcC
Confidence 99999999999999995 4455567789999999987665 35576 45889999 999 9999999
Q ss_pred ChHHHHHHHHHHhcCCCceeeEeeecCCCCCCCeEEEEEEEEEccCceEEEeEEEeecCCCCCCCCcccCCCeEEEEEee
Q 039285 400 NIEAGKQALRNINSLSLFSNIEVNPRPDEKNEGGIIVEIKLKELDQKSAEVSAEWSLVPGRGGRPTFASLQPGGTVSFEH 479 (813)
Q Consensus 400 n~~~l~~~~~~L~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E~~~~~~~lg~g~s~~~G~~G~st~~~~~~~~~~s~~~ 479 (813)
|..+|++++++|++++ .+|++.+.|... ++.++|+|+|+|+++.. +++++++.. .|..+...+ .+.+++.+
T Consensus 168 n~~~le~~~~~L~~~~--~~v~~~~~p~~~-~g~~~l~v~v~e~~~~~--~~~g~~~~g--~g~~~tg~~--~~~~~~~~ 238 (554)
T 2qdz_A 168 NVFDIDQAIYNINNGG--KTGNITIVPADE-YGYSYLDLQLQRRALPR--VSLGMDNSG--PGTPENGRY--KYNASVTA 238 (554)
T ss_dssp CHHHHHHHHHHHCSSS--EEEEEEEEECSS-TTEEEEEEEEEECCSCE--EEEEEEECS--CSSSCSSCE--EEEEEEEE
T ss_pred CHHHHHHHHHHHhcCc--hhceEEEecCCC-CCeeEEEEEEeeCCcEE--EEEEEcCCC--CCCCCccce--EEEEEEEe
Confidence 9999999999999998 788888888665 48999999999988654 555555421 001122233 88999999
Q ss_pred ecccCCcceEEEEEEeeccc--CCCccceEEEEEEeccccCCCCCCcceEEEEEeeccccCccccCCCCCCcCCceeEee
Q 039285 480 RNLQGLNRSILGSVTTSNFL--NPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNSRKLSPVFTGGPGVDEVPAIWVDR 557 (813)
Q Consensus 480 ~Nl~G~G~~l~~~~~~s~~~--~~~~~~~~~lsy~~P~l~~~~~p~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 557 (813)
+|++|.|+++.+++..+... .......+.++|+.||.. +.+++++..++..+.... . .....|..++
T Consensus 239 ~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~~~-------~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~s 307 (554)
T 2qdz_A 239 NDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGR-------TRLDLQTGYSTYRNLLKT--R--YGQYQSAGNS 307 (554)
T ss_dssp ECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEETT-------EEEEEEEEEEEEECCCSS--S--SCCCCCEEEE
T ss_pred CCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEEEec-------CeEEEEEEEeEEEEEccC--C--cceEEEEeeE
Confidence 99999999999999874210 113578999999999853 234444333322111111 0 0112355677
Q ss_pred eeeEEEEeEeccc--CceEEEEEEEEEEEeecCCCCcCCCCccccCCCCcCCCCCCccccCCCcceeEEEEEEEEEeCCC
Q 039285 558 AGLKANITENFTR--QSKFTYGLVMEEITTRDESSHISPHGQRVLPSGGISADGPPTTLSGTGIDRMAFLQGNITRDNTK 635 (813)
Q Consensus 558 ~G~~~~l~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~s~~g~~~~~~l~~~~t~D~rD 635 (813)
.++++.+++++.+ .+++++++.+.+.+..+...... ++ ........+.++++||+++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---------------~~~~~~~~~~~~~~~~~~~ 366 (554)
T 2qdz_A 308 RSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTR------LD---------------VSSKHYSDVTVGMQYSTQR 366 (554)
T ss_dssp EEEEEEEEEEEECCSSEEEEEEEEEEEEEEEEECCTTS------CC---------------CEEEEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEEEEEECCCeEEEEEEEEEEEEeeeeeCCcC------cc---------------ccCceEEEEEEEEEEEEEe
Confidence 7888999999854 44455555544433222111000 00 0112356788899999875
Q ss_pred CCCCCCCccEEEEEEEecccC-----------CCCCcceEEEEEEEEEEEEcccccccCCCCCCcEEEEEEEeeeeecCC
Q 039285 636 FVNGAIVGERNVFQVDQGLGI-----------GSKFPFFNRHQLTLTRFFQLKQVEEGANKPPPPVLVLHGHYGGCVGDL 704 (813)
Q Consensus 636 ~~~~Pt~G~~~~~~~e~~~~l-----------g~d~~~f~k~~~~~~~y~~l~~~~~~~~~~~~~vl~~r~~~G~~~g~l 704 (813)
|..++...+.+..+..+ +++.. |.|+.+++++|+|+... ...+++.+++.+++..+++
T Consensus 367 ----~~~~~~~~~~~~~G~~~~a~~~~~~~~~~~~~~-f~k~~~~~~~~~~~~~~------~~~~~~~~~~~~q~~~~~l 435 (554)
T 2qdz_A 367 ----GANAYFGDLSFTRGVGVNNGKYAAYDERGPQGN-VSRFNGSLAWTRYMALA------GQPIQWASQLGFQYSRQQL 435 (554)
T ss_dssp ----SSEEEEEEEEEEECCCC--------------CC-CEEEEEEEEEEEEEEET------TEEEEEEEEEEEEECSSCS
T ss_pred ----cCeEEEEEEEEEecCCCCCCcCcccccCCCcce-EEEEEEEEEEEEEcccc------CCCEEEEEEEEeEecCCCC
Confidence 45556666666555321 34556 69999999999997310 0257788888888877789
Q ss_pred CcccccccCCCCccccccCCccCccceeeEEeEEEEEEe--------cceeEEEEEeecccCCCCCCCCCCCccccccCC
Q 039285 705 PSYDAFTLGGPYSVRGYNMGELGAARNILELGAEIRIPV--------KNTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMG 776 (813)
Q Consensus 705 p~~erF~lGG~~svRGy~~~~ig~G~~~~~~s~Elr~pl--------~~~~~~~F~D~G~vw~~~~~~~~~~~~~~~~~~ 776 (813)
|++|+|++||.++||||+.+.++||+.++.+++|||+|+ ..+.+++|+|+|++|+...+. . ..
T Consensus 436 p~~e~f~lGG~~sVRGy~~~~l~pGd~g~~~~~El~~~~~~~~~~~~~~~~~~~F~D~G~v~~~~~~~---~------~~ 506 (554)
T 2qdz_A 436 LNSYQITVGDEYTVRGYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSNHPDA---R------TI 506 (554)
T ss_dssp SSSEECCSCCCCCCTTCCCCCSCCSSCSSCCEESEEEEEEEEEEECCSSCEEEEEEEEEEEECSSSSC---C------EE
T ss_pred CcHHhEecCCCCeECCcccccccCCCccEEEEEEEEeeccccccCccceEEEEEEEEEEEEecCCCCC---C------CC
Confidence 999999999999999999999987999999999999997 357889999999999754311 1 22
Q ss_pred ceeeeeEEEE----EeeEEEEEEEecC------CCCeEE-EEEeccCC
Q 039285 777 HGSSYGVGAK----LGLVRAEYAVDHN------TGTGAL-FFRFGERY 813 (813)
Q Consensus 777 ~~~s~G~Glr----lGpirld~a~~~~------~~~~~f-~F~iG~~F 813 (813)
+++|+|+|+| +||+|+|||++.. +...+| ||+||..|
T Consensus 507 ~~~g~G~Glr~~~~~~~l~l~~a~pl~~~~~~~~~~~~~~~fsig~~F 554 (554)
T 2qdz_A 507 RMAGLAAGVRFDLPYARMSFTYSKPVGAQPGGAPRAPVWLYINAGLSF 554 (554)
T ss_dssp EEEEEEEEEEECCSSEEEEEEEEEECSCSCSSSCCCCSEEEEEEEEEC
T ss_pred EEEEEEEEEEEecCcEEEEEEEEeeccCCcccccCCceEEEEEEEEEC
Confidence 6799999999 5899999999642 146789 99999987
No 2
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=99.95 E-value=2.2e-27 Score=257.26 Aligned_cols=239 Identities=24% Similarity=0.374 Sum_probs=128.5
Q ss_pred ecCccceEEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHHHHcCCcceEEEEEEEcCCCceEEEEEE
Q 039285 159 LSGFRKYKLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETLATCGMFEKVDMEAKTKPDGTLGLTISF 238 (813)
Q Consensus 159 i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~~~Gyf~~V~~~~~~~~d~~~~v~i~~ 238 (813)
.+||++++|++|+|.|+..-.....++.|++.|.+++|+.|+.++|++|+++|+++|||.+|.+..+..++ .+.|+|
T Consensus 56 ~~Eg~~~~I~~I~i~Gn~~~~~~~~~~~l~~~l~~k~G~~~~~~~l~~di~~L~~~GyF~~V~v~~~~~~~---~v~l~~ 132 (316)
T 3mc9_A 56 ETTEPRVLVSEVLVRPQSGQLTPELETQVYNVIRTQPGRTTTRSQLQEDINAIFGTGFFSNVQASPEDTPL---GVRVSF 132 (316)
T ss_dssp --CCCCEEEEEEEEEESSSCCCHHHHHHHHHHCCCCTTSEECHHHHHHHHHHHHHTSCEEEEEEEEEEETT---EEEEEE
T ss_pred CCCCCceEEEEEEEECCcccccccCHHHHHhhccCCCCCccCHHHHHHHHHHHHHCCCceEEEEEEecCCC---eEEEEE
Confidence 48899999999999975211145778899999999999999999999999999999999988777654333 688999
Q ss_pred EeeecccceeEEEeeccccccccceecC------ccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCC
Q 039285 239 LESTWQSAERIRCINVGLMQQSKPIEMD------ADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDH 312 (813)
Q Consensus 239 ~v~e~p~g~~~k~~~vg~~~~~i~i~Gn------~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g 312 (813)
.|+|+|... +|.|+|| ..++++ .|++++. +++|
T Consensus 133 ~V~egp~I~------------~I~~~Gn~~~~~~~~~~~~----------------------------~L~~~l~-l~~G 171 (316)
T 3mc9_A 133 IVQPNPVLS------------KVEIQANPGTNVPSVLPQA----------------------------TADEIFR-AQYG 171 (316)
T ss_dssp EEEECCBCC------------EEEEECCC----CCSSCTT----------------------------HHHHHHG-GGTT
T ss_pred EEecCceEE------------EEEEeccccccccccCCHH----------------------------HHHHHhc-ccCC
Confidence 999876433 3468898 555444 4455565 7899
Q ss_pred CeecHHHHHHHHHHHHHHHHHCCCceeEEeeee-eecCeEEEEEEeeceeeeeEEeeeccCC-------ceeecCccHHH
Q 039285 313 GKVSARLLQRIRDRVQKWYHDEGYACAQVVNFG-NLNTREVVCEVVEGDITQLVVQFQDKLG-------NVVEGNTQLAV 384 (813)
Q Consensus 313 ~~~~~~~l~~~~~~I~~~Y~~~GY~~a~V~~~~-~~~~~~i~i~I~EG~~~~i~i~~i~~~G-------~~i~Gnt~~~v 384 (813)
++|+...|++++++|+++|.++||++|+|.... ...++.|+|.|+||++.++.+..++..| +.|.+.+++.+
T Consensus 172 ~~~n~~~l~~~~~~I~~~y~~~GY~~A~V~~~~~~~~~g~l~i~V~eG~i~~i~v~~i~~~Gn~~~~~Gn~i~~~t~~~v 251 (316)
T 3mc9_A 172 KILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSENGVVTLQVAEGVVENISVRFRNKEGQDVNEQGQPIRGRTQDYI 251 (316)
T ss_dssp SBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSCEECTTSEEEEEEECCEEC-----------------------------
T ss_pred CeeCHHHHHHHHHHHHHHHHHCCCeeEEeeeccEECCCCEEEEEEEcCccccEEEEEEeccccccccCCcccccccCHHH
Confidence 999999999999999999999999999997543 2245679999999976665444433221 22223357999
Q ss_pred HHHhccccCCCCCccChHHHHHHHHHHhcCCCceeeEeeecCCCCCCCeEEEEEEEEEcc
Q 039285 385 VKRELPKQLRQGNVFNIEAGKQALRNINSLSLFSNIEVNPRPDEKNEGGIIVEIKLKELD 444 (813)
Q Consensus 385 I~r~l~~~l~~G~~yn~~~l~~~~~~L~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E~~ 444 (813)
|+|+|. +++|++||..+|++++++|+++|+|++|++.+.+... ++.++|.|+|+|+.
T Consensus 252 I~r~l~--~~~G~~yn~~~l~~~~~~L~~lg~F~~V~v~~~p~~~-~~~vdl~v~v~e~~ 308 (316)
T 3mc9_A 252 ITREVE--LKPGQVFNRNTVQKDLQRVFGTGLFEDVNVSLDPGTD-PTKVNVVVNVVERS 308 (316)
T ss_dssp ------------------------------------------------------------
T ss_pred HHhhhc--cCCCCcCCHHHHHHHHHHHHcCCCcceeeEEeecCCC-CCeEEEEEEEEEcc
Confidence 999999 9999999999999999999999999999999888754 58999999999964
No 3
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=99.94 E-value=7.2e-25 Score=227.50 Aligned_cols=228 Identities=25% Similarity=0.385 Sum_probs=186.0
Q ss_pred ccceEEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHHHHcCCcceEEEEEEEcCCCceEEEEEEEee
Q 039285 162 FRKYKLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETLATCGMFEKVDMEAKTKPDGTLGLTISFLES 241 (813)
Q Consensus 162 ~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~~~Gyf~~V~~~~~~~~d~~~~v~i~~~v~ 241 (813)
+++++|++|+|.| ++...++.++..|.+++|+.|+++.+++|+++|+++|||.+|++.....++ .+.|+|.|+
T Consensus 2 ~~~~~I~~I~i~G----~~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~L~~~Gyf~~~~v~~~~~~~---~~~l~~~v~ 74 (235)
T 2x8x_X 2 EPKVLIAEVVVEG----ATPELEQLVYQVISTRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRDTPL---GVRITFVVR 74 (235)
T ss_dssp CCCEEEEEEEEES----CCHHHHHHHHHHCCCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEEEETT---EEEEEEEEE
T ss_pred CCccEEEEEEEEC----CCccCHHHHHHhhccCCCCccCHHHHHHHHHHHHHCCCcEEEEEEEecCCC---cEEEEEEEE
Confidence 5678999999996 455778889999999999999999999999999999998656555433232 578899999
Q ss_pred ecccceeEEEeeccccccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHH
Q 039285 242 TWQSAERIRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQ 321 (813)
Q Consensus 242 e~p~g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~ 321 (813)
|+|.. .+|.|+|+..+++++|.+ ++. +++|++|+...++
T Consensus 75 eg~~i------------~~i~~~G~~~~~~~~l~~----------------------------~~~-~~~G~~~~~~~l~ 113 (235)
T 2x8x_X 75 PYPVL------------RAVQVAGNQVLTQEKVNE----------------------------IFA-PQIGRTLNLRELQ 113 (235)
T ss_dssp ECCBC------------CEEEEESCSSSCHHHHHH----------------------------HHG-GGTTSBCCHHHHH
T ss_pred ecceE------------EEEEEECCccCCHHHHHH----------------------------HhC-ccCCCCcCHHHHH
Confidence 77633 344789998877665543 344 6889999999999
Q ss_pred HHHHHHHHHHHHCCCceeEEeeee-eecCeEEEEEEeeceeeeeEEeeeccCCceeecC-----ccHHHHHHhccccCCC
Q 039285 322 RIRDRVQKWYHDEGYACAQVVNFG-NLNTREVVCEVVEGDITQLVVQFQDKLGNVVEGN-----TQLAVVKRELPKQLRQ 395 (813)
Q Consensus 322 ~~~~~I~~~Y~~~GY~~a~V~~~~-~~~~~~i~i~I~EG~~~~i~i~~i~~~G~~i~Gn-----t~~~vI~r~l~~~l~~ 395 (813)
+++++|.++|+++||++|+|.... ...++.|++.|.||++..+.+..+ .+.|| +++.+|++++. +++
T Consensus 114 ~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~~l~~~v~eG~~~~i~i~~i-----~~~G~~~~~~~~~~~i~~~~~--~~~ 186 (235)
T 2x8x_X 114 AGIEKINTFYRDNGYILGQVVGTPQVDPDGVVTLQVAEGVVEQVTYRFL-----NKEGEPTKQRTRDFVISREMD--TQP 186 (235)
T ss_dssp HHHHHHHHHHHHTTCTTCEEEEEEEECTTSEEEEEEECCBEEEEEEEEB-----CTTSCBCCCCSCHHHHHTTCS--CCT
T ss_pred HHHHHHHHHHHhCCCeeEEEEeecccCCCcEEEEEEEeCceEEEEEEEe-----cccCCcCCCccchhheeeeee--cCC
Confidence 999999999999999999997653 334458999999999765543333 24454 46899999999 999
Q ss_pred CCccChHHHHHHHHHHhcCCCceeeEeeecCCCCCCCeEEEEEEEEEccC
Q 039285 396 GNVFNIEAGKQALRNINSLSLFSNIEVNPRPDEKNEGGIIVEIKLKELDQ 445 (813)
Q Consensus 396 G~~yn~~~l~~~~~~L~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E~~~ 445 (813)
|++|+..++++++++|.++|||++|++.+.|... ++.++|.|.|+|+++
T Consensus 187 G~~~~~~~l~~~~~~L~~~g~f~~v~i~~~~~~~-~~~~~l~i~v~e~~t 235 (235)
T 2x8x_X 187 GVVLNQKTVQADLRRLFELGLFEDVQVALEPGQN-PRRVNLILNIKERNT 235 (235)
T ss_dssp TSBCCHHHHHHHHHHHHHHTCEEEEEEEEEECSS-TTSEEEEEEEEECCC
T ss_pred CCccCHHHHHHHHHHHHhcCCcccceEEeccCCC-CCeeEEEEEEEeCCC
Confidence 9999999999999999999999999998887643 478999999999873
No 4
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=99.93 E-value=2.8e-26 Score=257.21 Aligned_cols=252 Identities=17% Similarity=0.229 Sum_probs=159.3
Q ss_pred EeeccchhhccccccccccccCCCCc------------eeeEEeeeecCccceEEEEEEEEeccCCcccCChhhHhhhcc
Q 039285 125 KVFGTELAIADEDNESQDWDAHGLPA------------NIAVQLSKLSGFRKYKLSEILFFDRQRGATVGTEDSFFEMVS 192 (813)
Q Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~ 192 (813)
.+|++..+..+...|+++|.++|++. +.+...+.|+||++++|.+|.|.| +...+++.|.+.|.
T Consensus 106 ~~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~v~l~~~V~eG~~~~I~~I~~~G----n~~~~~~~L~~~~~ 181 (395)
T 3efc_A 106 ESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQINIVG----NHAFTTDELISHFQ 181 (395)
T ss_dssp SCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBCTTSEEEEEEEEECCCCCCCCCCEEES----CCSSCTTTTGGGCC
T ss_pred CccCHHHHHHHHHHHHHHHHHcCccceEEEEEEEECCCCEEEEEEEEecCCeEEEEEEEEEC----CcccCHHHHHHHHh
Confidence 57899999999999999999999864 234466789999999999999995 56677788899999
Q ss_pred cCCC---------CcccHHHHHHHHHHHH----HcCCcc-eEEEE-EEEcCCCceEEEEEEEeeecccceeEEEeecccc
Q 039285 193 LRPG---------GVYTRTQLLKELETLA----TCGMFE-KVDME-AKTKPDGTLGLTISFLESTWQSAERIRCINVGLM 257 (813)
Q Consensus 193 ~~~g---------~~~~~~~l~~d~~~L~----~~Gyf~-~V~~~-~~~~~d~~~~v~i~~~v~e~p~g~~~k~~~vg~~ 257 (813)
+++| +.|+++.+++|+++|. +.||++ +|... +...++.. .+.|+|.|+ +|++|++
T Consensus 182 ~~~g~~~~~~~~~~~~~~~~l~~d~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~-~v~v~i~V~---eG~~y~i------ 251 (395)
T 3efc_A 182 LRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKK-GIYVTVNIT---EGDQYKL------ 251 (395)
T ss_dssp CCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSC-SEECEEEEE---CCCCCEE------
T ss_pred CCCCccchhhccCCccCHHHHHhHHHHHHHHHHhCCCceEEEeccEEEECCCCc-EEEEEEEEe---cCCCEEE------
Confidence 9999 9999999999988885 599999 88643 33344432 578999998 5778887
Q ss_pred ccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCc
Q 039285 258 QQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYA 337 (813)
Q Consensus 258 ~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~ 337 (813)
.+|.|+||..++++.|++ .+. +++|++|+.+.+++++++|.++|.+.||+
T Consensus 252 -~~I~i~Gn~~~~~~~l~~----------------------------~~~-l~~G~~y~~~~l~~~~~~l~~~~~~~GY~ 301 (395)
T 3efc_A 252 -SGVEVSGNLAGHSAEIEQ----------------------------LTK-IEPGELYNGTKVTKMEDDIKKLLGRYGYA 301 (395)
T ss_dssp -EEECCBSCCTTCHHHHHH----------------------------TCC-CCSSCBCCHHHHHHHHHHHHHHHHHTTCS
T ss_pred -EEEEEECCCCCCHHHHHH----------------------------Hhc-cCCCCCcCHHHHHHHHHHHHHHHHhCCCC
Confidence 355889998877766543 333 78999999999999999999999999999
Q ss_pred eeEEeeeeeec--Ce--EEEEEEeeceeeeeEEeeeccCCceeecC--ccHHHHHHhccccCCCCCccChHHHHHHHHHH
Q 039285 338 CAQVVNFGNLN--TR--EVVCEVVEGDITQLVVQFQDKLGNVVEGN--TQLAVVKRELPKQLRQGNVFNIEAGKQALRNI 411 (813)
Q Consensus 338 ~a~V~~~~~~~--~~--~i~i~I~EG~~~~i~i~~i~~~G~~i~Gn--t~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L 411 (813)
+++|.+....+ ++ .+++.|+||+++++ +++ .|.|| |++++|+|++. ++||++||..++++++++|
T Consensus 302 ~~~v~~~~~~~~~~~~v~l~~~v~eG~~~~i-----~~I--~i~Gn~~~~~~virr~~~--~~~G~~y~~~~l~~~~~~L 372 (395)
T 3efc_A 302 YPRVQSMPEINDADKTVKLRVNVDAGNRFYV-----RKI--RFEGNDTSKDAVLRREMR--QMEGAWLGSDLVDQGKERL 372 (395)
T ss_dssp SCEEEEEEEEETTTTEEEEEEEEECCCCCCC-------------------------------------------------
T ss_pred ccEEEEeeEecCCCCEEEEEEEEEeCCeEEE-----EEE--EEECCCcCChHHHhhhcc--cCCCccCCHHHHHHHHHHH
Confidence 99998664432 33 48899999998765 332 57788 57999999999 9999999999999999999
Q ss_pred hcCCCceeeEeeecCCCC
Q 039285 412 NSLSLFSNIEVNPRPDEK 429 (813)
Q Consensus 412 ~~~g~F~~V~i~~~~~~~ 429 (813)
.++|||++|++++.+.+.
T Consensus 373 ~~lg~F~~V~i~~~~~~~ 390 (395)
T 3efc_A 373 NRLGFFETVDTDTQRVPG 390 (395)
T ss_dssp ------------------
T ss_pred HhCCCcceeeeeccCCCC
Confidence 999999999998776543
No 5
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=99.92 E-value=5.4e-24 Score=238.57 Aligned_cols=260 Identities=16% Similarity=0.226 Sum_probs=198.7
Q ss_pred cccccccCCCCceeeEE------eeeecCccceEEEEEEEEeccCCcccCChhhHhhh---cccCCCCcccHHHHHHHHH
Q 039285 139 ESQDWDAHGLPANIAVQ------LSKLSGFRKYKLSEILFFDRQRGATVGTEDSFFEM---VSLRPGGVYTRTQLLKELE 209 (813)
Q Consensus 139 ~~~~~~~~g~~~~~~~~------~~~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~---l~~~~g~~~~~~~l~~d~~ 209 (813)
|+++| ++|+|.|+.+. +..|.| +|+|++|.|+| ++.++++.|++. +.+++|+.|+++.++++++
T Consensus 46 i~~l~-~~g~F~dv~v~~~g~~l~~~v~e--~p~I~~I~~~G----n~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~ 118 (395)
T 3efc_A 46 IRALF-ATGNFEDVRVLRDGDTLLVQVKE--RPTIASITFSG----NKSVKDDMLKQNLEASGVRVGESLDRTTIADIEK 118 (395)
T ss_dssp HHHHH-HHCCEEEEEEECCSSEEEEEEEE--CCEEEEEEEES----CTTSCHHHHHHHHHHHTCCSSSCCCGGGHHHHHH
T ss_pred HHHHH-HcCCccEEEEEEeCCEEEEEEEE--ccEEEEEEEEC----CccCCHHHHHHHHHhcCCCCCCccCHHHHHHHHH
Confidence 58999 78999987663 334444 57899999995 567888888765 4689999999999999998
Q ss_pred HH----HHcCCcc-eEEEEEEEcCCCceEEEEEEEeeecccceeEEEeeccccccccceecCccCChHHHHHHhhhhhhh
Q 039285 210 TL----ATCGMFE-KVDMEAKTKPDGTLGLTISFLESTWQSAERIRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKD 284 (813)
Q Consensus 210 ~L----~~~Gyf~-~V~~~~~~~~d~~~~v~i~~~v~e~p~g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~ 284 (813)
+| .++|||+ +|++.+...+++ .+.|+|.|+ ||+++++ .+|.|+||..+++++|++.|..++..
T Consensus 119 ~l~~~y~~~Gy~~a~V~~~~~~~~~~--~v~l~~~V~---eG~~~~I-------~~I~~~Gn~~~~~~~L~~~~~~~~g~ 186 (395)
T 3efc_A 119 GLEDFYYSVGKYSASVKAVVTPLPRN--RVDLKLVFQ---EGVSAEI-------QQINIVGNHAFTTDELISHFQLRDEV 186 (395)
T ss_dssp HHHHHHHTTTCCSCEEEEECCBCTTS--EEEEEEEEE---CCCCCCC-------CCCEEESCCSSCTTTTGGGCCCCSSC
T ss_pred HHHHHHHHcCccceEEEEEEEECCCC--EEEEEEEEe---cCCeEEE-------EEEEEECCcccCHHHHHHHHhCCCCc
Confidence 88 5599999 998876544343 688999998 5666664 57789999999998887665421100
Q ss_pred hhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCceeEEeee-eee--c--CeEEEEEEeec
Q 039285 285 YKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYACAQVVNF-GNL--N--TREVVCEVVEG 359 (813)
Q Consensus 285 y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~~a~V~~~-~~~--~--~~~i~i~I~EG 359 (813)
..+.++ .+++|+.+.+++++++|.++|+++||++|+|.+. ... + ...|++.|+||
T Consensus 187 -------------------~~~~~~-~~~~~~~~~l~~d~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~~v~v~i~V~eG 246 (395)
T 3efc_A 187 -------------------PWWNVV-GDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEG 246 (395)
T ss_dssp -------------------CSCCSC-TTTHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCCEECTTSCSEECEEEEECC
T ss_pred -------------------cchhhc-cCCccCHHHHHhHHHHHHHHHHhCCCceEEEeccEEEECCCCcEEEEEEEEecC
Confidence 001111 3499999999999999999999999999999765 333 2 23689999999
Q ss_pred eeeee-EEeeeccCCceeecCc--cHHHHHHhccccCCCCCccChHHHHHHHHHH----hcCCC-ceeeEeeecCCCCCC
Q 039285 360 DITQL-VVQFQDKLGNVVEGNT--QLAVVKRELPKQLRQGNVFNIEAGKQALRNI----NSLSL-FSNIEVNPRPDEKNE 431 (813)
Q Consensus 360 ~~~~i-~i~~i~~~G~~i~Gnt--~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L----~~~g~-F~~V~i~~~~~~~~~ 431 (813)
+++++ .+ .|.||+ .+..|++.+. +++|++|+..++++++++| .+.|| |.+|...+..... .
T Consensus 247 ~~y~i~~I--------~i~Gn~~~~~~~l~~~~~--l~~G~~y~~~~l~~~~~~l~~~~~~~GY~~~~v~~~~~~~~~-~ 315 (395)
T 3efc_A 247 DQYKLSGV--------EVSGNLAGHSAEIEQLTK--IEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDA-D 315 (395)
T ss_dssp CCCEEEEE--------CCBSCCTTCHHHHHHTCC--CCSSCBCCHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEETT-T
T ss_pred CCEEEEEE--------EEECCCCCCHHHHHHHhc--cCCCCCcCHHHHHHHHHHHHHHHHhCCCCccEEEEeeEecCC-C
Confidence 99887 33 356774 6889999999 9999999999999986544 57898 4566655444443 3
Q ss_pred CeEEEEEEEEEccCceE
Q 039285 432 GGIIVEIKLKELDQKSA 448 (813)
Q Consensus 432 ~~v~l~i~V~E~~~~~~ 448 (813)
+.++|.+.|.|+++..+
T Consensus 316 ~~v~l~~~v~eG~~~~i 332 (395)
T 3efc_A 316 KTVKLRVNVDAGNRFYV 332 (395)
T ss_dssp TEEEEEEEEECCCCCCC
T ss_pred CEEEEEEEEEeCCeEEE
Confidence 78999999999987653
No 6
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=99.91 E-value=1.8e-23 Score=229.04 Aligned_cols=270 Identities=16% Similarity=0.207 Sum_probs=201.0
Q ss_pred eeccchhhccccccccccccCCCCceeeE------EeeeecCccceEEEEEEEEeccCCcccCChhhHhhhcccC---CC
Q 039285 126 VFGTELAIADEDNESQDWDAHGLPANIAV------QLSKLSGFRKYKLSEILFFDRQRGATVGTEDSFFEMVSLR---PG 196 (813)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~------~~~~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~---~g 196 (813)
.+++..+..+ ++.+| +.|+|.++.+ .++.|.|++ .|++|.|.| ++..+++.|.+.|..+ +|
T Consensus 37 ~~~~~~i~~~---i~~L~-~~g~f~~v~v~~~~~~l~~~V~e~p--~I~~i~~~G----n~~~~~~~l~~~l~~~~l~~g 106 (335)
T 2qdf_A 37 TVNDEDISNT---IRALF-ATGNFEDVRVLRDGDTLLVQVKERP--TIASITFSG----NKSVKDDMLKQNLEASGVRVG 106 (335)
T ss_dssp EECHHHHHHH---HHHHH-TTSCEEEEEEEEETTEEEEEEEECC--EEEEEEEES----CCSSCHHHHHHHHHTTTCCTT
T ss_pred ccCHHHHHHH---HHHHH-hCCCcceEEEEeCCCEEEEEEEecc--EEEEEEEEC----CccCCHHHHHHHHHhcCCCCC
Confidence 3444444433 47788 7799987654 344566665 499999995 5567778888887544 89
Q ss_pred CcccHHHHHHHHHHHHH----cCCcc-eEEEEEEEcCCCceEEEEEEEeeecccceeEEEeeccccccccceecCccCCh
Q 039285 197 GVYTRTQLLKELETLAT----CGMFE-KVDMEAKTKPDGTLGLTISFLESTWQSAERIRCINVGLMQQSKPIEMDADMTE 271 (813)
Q Consensus 197 ~~~~~~~l~~d~~~L~~----~Gyf~-~V~~~~~~~~d~~~~v~i~~~v~e~p~g~~~k~~~vg~~~~~i~i~Gn~~~~~ 271 (813)
+.|+++.++++.++|.+ +|||+ +|.......+++ .+.|+|.|+ +|++|++ .+|.|+||..+++
T Consensus 107 ~~~~~~~~~~~~~~l~~~y~~~GY~~a~v~~~~~~~~~~--~~~v~~~i~---eG~~~~i-------~~I~~~G~~~~~~ 174 (335)
T 2qdf_A 107 ESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRN--RVDLKLVFQ---EGVSAEI-------QQINIVGNHAFTT 174 (335)
T ss_dssp SBCCTTSHHHHHHHHHHHGGGGTBSSCEEEEEEEEETTT--EEEEEEEEE---CCCBCEE-------EEEEEESCCSSCH
T ss_pred cccCHHHHHHHHHHHHHHHHHcCCcceEEEEEEEECCCC--eEEEEEEEe---cCCEEEE-------EEEEEECCccCCH
Confidence 99999999999988865 99999 997766543444 688999998 5777776 4568999999999
Q ss_pred HHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCceeEEee-eeeec--
Q 039285 272 REKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYACAQVVN-FGNLN-- 348 (813)
Q Consensus 272 ~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~~a~V~~-~~~~~-- 348 (813)
++|++.|... .. ..++.++ .|++|+.+.+++++++|.++|.++||++|+|.. ....+
T Consensus 175 ~~l~~~~~~~-----------------~g--~~~~~~~-~g~~~~~~~l~~~~~~l~~~y~~~GY~~~~v~~~~~~~~~~ 234 (335)
T 2qdf_A 175 DELISHFQLR-----------------DE--VPWWNVV-GDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPD 234 (335)
T ss_dssp HHHHGGGSCC----------------------------------CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTT
T ss_pred HHHHHHhccC-----------------CC--ccccccc-cCCeeCHHHHHHHHHHHHHHHHHCCCeEEEEcCCEEEEcCC
Confidence 8887765310 00 0022234 579999999999999999999999999999965 44442
Q ss_pred Ce--EEEEEEeeceeeee-EEeeeccCCceeecC--ccHHHHHHhccccCCCCCccChHHHHHHHHHHh----cCCC-ce
Q 039285 349 TR--EVVCEVVEGDITQL-VVQFQDKLGNVVEGN--TQLAVVKRELPKQLRQGNVFNIEAGKQALRNIN----SLSL-FS 418 (813)
Q Consensus 349 ~~--~i~i~I~EG~~~~i-~i~~i~~~G~~i~Gn--t~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L~----~~g~-F~ 418 (813)
++ .|++.|.||+++++ .| .|.|| +.+.+|++++. +++|++||..++++++++|. ++|| |.
T Consensus 235 ~~~v~v~i~v~eG~~~~i~~I--------~i~g~~~~~~~~l~~~~~--~~~G~~~~~~~l~~~~~~l~~~~~~~Gy~f~ 304 (335)
T 2qdf_A 235 KKGIYVTVNITEGDQYKLSGV--------EVSGNLAGHSAEIEQLTK--IEPGELYNGTKVTKMEDDIKKLLGRYGYAYP 304 (335)
T ss_dssp SSEEEEEEEEECCCCCEEEEE--------EEEEECTTCHHHHHHHTC--CCTTEECCHHHHHHHHHHHHHHHHTTTBSSC
T ss_pred CCEEEEEEEEccCCcEEEEEE--------EEEccccCChHHHHHhcC--CCCCCccCHHHHHHHHHHHHHHHHhCCCCce
Confidence 22 68899999998876 33 35677 47899999999 99999999999999999887 5697 88
Q ss_pred eeEeeecCCCCCCCeEEEEEEEEEccCceE
Q 039285 419 NIEVNPRPDEKNEGGIIVEIKLKELDQKSA 448 (813)
Q Consensus 419 ~V~i~~~~~~~~~~~v~l~i~V~E~~~~~~ 448 (813)
+|.+.+.++.. ++.++|.+.|.|+++..+
T Consensus 305 ~v~~~~~~~~~-~~~vdv~i~v~e~~~~~v 333 (335)
T 2qdf_A 305 RVQSMPEINDA-DKTVKLRVNVDAGNRFYV 333 (335)
T ss_dssp EEEEEEEEETT-TTEEEEEEEEECCCBCCC
T ss_pred EEEEeeEecCC-CCEEEEEEEEeeCCeEEe
Confidence 88887776554 479999999999987653
No 7
>2qdf_A OMP85, outer membrane protein assembly factor YAET; potra domain, protein transport; 2.20A {Escherichia coli K12} PDB: 2qcz_A 2v9h_A
Probab=99.83 E-value=1.4e-19 Score=198.14 Aligned_cols=225 Identities=15% Similarity=0.197 Sum_probs=172.4
Q ss_pred ceEEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHHHHcCCcceEEEEEEEcCCCceEEEEEEEeeec
Q 039285 164 KYKLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETLATCGMFEKVDMEAKTKPDGTLGLTISFLESTW 243 (813)
Q Consensus 164 ~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~~~Gyf~~V~~~~~~~~d~~~~v~i~~~v~e~ 243 (813)
.+.|.+|+|.| ++.+.++.|+..|.+++|+.++++.+++++++|+++|||++|+++. ++ ..|+|.|+|+
T Consensus 7 ~~~i~~i~v~G----~~~~~~~~i~~~l~~~~g~~~~~~~i~~~i~~L~~~g~f~~v~v~~----~~---~~l~~~V~e~ 75 (335)
T 2qdf_A 7 GFVVKDIHFEG----LQRVAVGAALLSMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLR----DG---DTLLVQVKER 75 (335)
T ss_dssp CEECCEEEEES----CSSSCHHHHHHTSSCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEE----ET---TEEEEEEEEC
T ss_pred CceEeEEEEEC----CEEcCHHHHHHhcCCCCCCccCHHHHHHHHHHHHhCCCcceEEEEe----CC---CEEEEEEEec
Confidence 47799999995 5668889999999999999999999999999999999999886663 22 2477888876
Q ss_pred ccceeEEEeeccccccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHH
Q 039285 244 QSAERIRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRI 323 (813)
Q Consensus 244 p~g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~ 323 (813)
|.+. +|.|+||+.+++++|++.|+.. . ++.|.+|+...++++
T Consensus 76 p~I~------------~i~~~Gn~~~~~~~l~~~l~~~-------------------------~-l~~g~~~~~~~~~~~ 117 (335)
T 2qdf_A 76 PTIA------------SITFSGNKSVKDDMLKQNLEAS-------------------------G-VRVGESLDRTTIADI 117 (335)
T ss_dssp CEEE------------EEEEESCCSSCHHHHHHHHHTT-------------------------T-CCTTSBCCTTSHHHH
T ss_pred cEEE------------EEEEECCccCCHHHHHHHHHhc-------------------------C-CCCCcccCHHHHHHH
Confidence 6533 3468999999999888766521 1 557999999999999
Q ss_pred HHHHHHHHHHCCCceeEEeeeee-ecCe--EEEEEEeeceeeee-EEeeeccCCceeecCc--cHHHHHHhccccCCCC-
Q 039285 324 RDRVQKWYHDEGYACAQVVNFGN-LNTR--EVVCEVVEGDITQL-VVQFQDKLGNVVEGNT--QLAVVKRELPKQLRQG- 396 (813)
Q Consensus 324 ~~~I~~~Y~~~GY~~a~V~~~~~-~~~~--~i~i~I~EG~~~~i-~i~~i~~~G~~i~Gnt--~~~vI~r~l~~~l~~G- 396 (813)
+++|+++|+++||++|+|..... .+++ .|++.|+||+++++ .+. +.||+ .+..|++.+. +++|
T Consensus 118 ~~~l~~~y~~~GY~~a~v~~~~~~~~~~~~~v~~~i~eG~~~~i~~I~--------~~G~~~~~~~~l~~~~~--~~~g~ 187 (335)
T 2qdf_A 118 EKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQIN--------IVGNHAFTTDELISHFQ--LRDEV 187 (335)
T ss_dssp HHHHHHHGGGGTBSSCEEEEEEEEETTTEEEEEEEEECCCBCEEEEEE--------EESCCSSCHHHHHGGGS--CC---
T ss_pred HHHHHHHHHHcCCcceEEEEEEEECCCCeEEEEEEEecCCEEEEEEEE--------EECCccCCHHHHHHHhc--cCCCc
Confidence 99999999999999999976543 2333 68999999998877 333 56774 5788999888 8887
Q ss_pred --------CccChHHHHHHHHHHh----cCCCce-eeEe-eecCCCCCCCeEEEEEEEEEccCceE
Q 039285 397 --------NVFNIEAGKQALRNIN----SLSLFS-NIEV-NPRPDEKNEGGIIVEIKLKELDQKSA 448 (813)
Q Consensus 397 --------~~yn~~~l~~~~~~L~----~~g~F~-~V~i-~~~~~~~~~~~v~l~i~V~E~~~~~~ 448 (813)
++|+.+++++++++|. +.||+. .|.. .+..+.. ++.++|.+.|.|+++..+
T Consensus 188 ~~~~~~~g~~~~~~~l~~~~~~l~~~y~~~GY~~~~v~~~~~~~~~~-~~~v~v~i~v~eG~~~~i 252 (335)
T 2qdf_A 188 PWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARFNIDSTQVSLTPD-KKGIYVTVNITEGDQYKL 252 (335)
T ss_dssp -----------CCSCHHHHHHHHHHHHHTTTCTTCEEEEEEEEECTT-SSEEEEEEEEECCCCCEE
T ss_pred cccccccCCeeCHHHHHHHHHHHHHHHHHCCCeEEEEcCCEEEEcCC-CCEEEEEEEEccCCcEEE
Confidence 9999999999887763 568764 3322 2233222 367999999999987653
No 8
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=99.78 E-value=1.2e-18 Score=174.67 Aligned_cols=152 Identities=18% Similarity=0.255 Sum_probs=124.2
Q ss_pred cceeEEEeeccccccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHH
Q 039285 245 SAERIRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIR 324 (813)
Q Consensus 245 ~g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~ 324 (813)
++++|++ .+|.|+||..+++++|+ +++. +++|++|+.+.+++++
T Consensus 31 ~~~~y~i-------~~I~i~G~~~~~~~~L~----------------------------~~~~-~~~G~~~~~~~l~~~~ 74 (189)
T 3q6b_A 31 QMGRYKL-------SGVEVSGNLAGHSAEIE----------------------------QLTK-IEPGELYNGTKVTKME 74 (189)
T ss_dssp ----CEE-------EEEEEEEECTTCHHHHH----------------------------HHTC-CCTTCBCCHHHHHHHH
T ss_pred CCCCEEE-------EEEEEECCCcCCHHHHH----------------------------HhhC-CCCCCeeCHHHHHHHH
Confidence 5677776 45689999887765554 3444 7899999999999999
Q ss_pred HHHHHHHHHCCCceeEEeeee--eecCe--EEEEEEeeceeeee-EEeeeccCCceeecC--ccHHHHHHhccccCCCCC
Q 039285 325 DRVQKWYHDEGYACAQVVNFG--NLNTR--EVVCEVVEGDITQL-VVQFQDKLGNVVEGN--TQLAVVKRELPKQLRQGN 397 (813)
Q Consensus 325 ~~I~~~Y~~~GY~~a~V~~~~--~~~~~--~i~i~I~EG~~~~i-~i~~i~~~G~~i~Gn--t~~~vI~r~l~~~l~~G~ 397 (813)
++|+++|+++||++|+|.+.. +.+++ .|++.|+||++++| +| .|.|| +++.+|+++++ +++|+
T Consensus 75 ~~I~~~y~~~GY~~a~v~~~~~~d~~~~~v~l~~~V~eG~~~~i~~I--------~i~Gn~~~~~~~i~r~l~--~~~G~ 144 (189)
T 3q6b_A 75 DDIKKLLGRYGYAYPRVQSMPEINDADKTVKLRVNVDAGNRFYVRKI--------RFEGNDTSKDAVLRREMR--QMEGA 144 (189)
T ss_dssp HHHHHHHHTTTCCSCEEEEEEEEETTTTEEEEEEEEECCCCCEEEEE--------EEESCSSSCHHHHHTTCC--SCTTS
T ss_pred HHHHHHHHhCCCceEEeeEEEEecCCCCEEEEEEEECCCCeEEEEEE--------EEECCccCCHHHHHhhcc--CCCCC
Confidence 999999999999999997643 33333 68899999998776 33 36677 57999999999 99999
Q ss_pred ccChHHHHHHHHHHhcCCCceeeEeeecCCCCCCCeEEEEEEEEE
Q 039285 398 VFNIEAGKQALRNINSLSLFSNIEVNPRPDEKNEGGIIVEIKLKE 442 (813)
Q Consensus 398 ~yn~~~l~~~~~~L~~~g~F~~V~i~~~~~~~~~~~v~l~i~V~E 442 (813)
+||..++++++++|.++|||+.|++.+.+.+..++.++|.|.|+|
T Consensus 145 ~~n~~~l~~~~~~L~~lg~F~~V~i~~~~~~~~~~~vdv~v~V~E 189 (189)
T 3q6b_A 145 WLGSDLVDQGKERLNRLGFFETVDTDTQRVPGSPDQVDVVYKVKE 189 (189)
T ss_dssp BCCHHHHHHHHHHHHHHSCCSEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred ccCHHHHHHHHHHHHhCCCceeeEEEeccCCCCCCEEEEEEEEEC
Confidence 999999999999999999999999998876544689999999987
No 9
>3q6b_A Outer membrane protein assembly complex, YAET Pro; potra fold, insertion of outer membrane proteins, protein BI; 1.50A {Escherichia coli} PDB: 3og5_A
Probab=99.21 E-value=3.6e-10 Score=112.93 Aligned_cols=153 Identities=14% Similarity=0.205 Sum_probs=108.2
Q ss_pred eecCccceEEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHHH----HcCCcc-eEEEEEEEcCCCce
Q 039285 158 KLSGFRKYKLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETLA----TCGMFE-KVDMEAKTKPDGTL 232 (813)
Q Consensus 158 ~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~----~~Gyf~-~V~~~~~~~~d~~~ 232 (813)
...++++++|.+|.|.|+ ...+++.|.+.+.+++|+.|+.+.++++.++|. +.||+. +|...++...+..
T Consensus 28 ~~~~~~~y~i~~I~i~G~----~~~~~~~L~~~~~~~~G~~~~~~~l~~~~~~I~~~y~~~GY~~a~v~~~~~~d~~~~- 102 (189)
T 3q6b_A 28 GGQQMGRYKLSGVEVSGN----LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADK- 102 (189)
T ss_dssp -------CEEEEEEEEEE----CTTCHHHHHHHTCCCTTCBCCHHHHHHHHHHHHHHHHTTTCCSCEEEEEEEEETTTT-
T ss_pred CCCCCCCEEEEEEEEECC----CcCCHHHHHHhhCCCCCCeeCHHHHHHHHHHHHHHHHhCCCceEEeeEEEEecCCCC-
Confidence 356889999999999974 456678899999999999999999999987774 499999 9977544333332
Q ss_pred EEEEEEEeeecccceeEEEeeccccccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCC
Q 039285 233 GLTISFLESTWQSAERIRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDH 312 (813)
Q Consensus 233 ~v~i~~~v~e~p~g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g 312 (813)
.+.|+|.|+ +|++|+| .+|.|+||....++.|++ .+. +++|
T Consensus 103 ~v~l~~~V~---eG~~~~i-------~~I~i~Gn~~~~~~~i~r----------------------------~l~-~~~G 143 (189)
T 3q6b_A 103 TVKLRVNVD---AGNRFYV-------RKIRFEGNDTSKDAVLRR----------------------------EMR-QMEG 143 (189)
T ss_dssp EEEEEEEEE---CCCCCEE-------EEEEEESCSSSCHHHHHT----------------------------TCC-SCTT
T ss_pred EEEEEEEEC---CCCeEEE-------EEEEEECCccCCHHHHHh----------------------------hcc-CCCC
Confidence 688999998 5778887 456899998877655443 233 7899
Q ss_pred CeecHHHHHHHHHHHHHHHHHCCC-ceeEEeeeeee-cCe--EEEEEEee
Q 039285 313 GKVSARLLQRIRDRVQKWYHDEGY-ACAQVVNFGNL-NTR--EVVCEVVE 358 (813)
Q Consensus 313 ~~~~~~~l~~~~~~I~~~Y~~~GY-~~a~V~~~~~~-~~~--~i~i~I~E 358 (813)
++|+.+++++.+++|.+ .|| ..+.|.+.... .++ +|.++|.|
T Consensus 144 ~~~n~~~l~~~~~~L~~----lg~F~~V~i~~~~~~~~~~~vdv~v~V~E 189 (189)
T 3q6b_A 144 AWLGSDLVDQGKERLNR----LGFFETVDTDTQRVPGSPDQVDVVYKVKE 189 (189)
T ss_dssp SBCCHHHHHHHHHHHHH----HSCCSEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred CccCHHHHHHHHHHHHh----CCCceeeEEEeccCCCCCCEEEEEEEEEC
Confidence 99999999999888755 587 45666555321 233 35555544
No 10
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=99.08 E-value=2.4e-09 Score=110.26 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=124.8
Q ss_pred eeccchhhccccccccccccCCCCceeeE----------EeeeecCccceEEEEEEEEeccCCcccCChhhHhhhcccCC
Q 039285 126 VFGTELAIADEDNESQDWDAHGLPANIAV----------QLSKLSGFRKYKLSEILFFDRQRGATVGTEDSFFEMVSLRP 195 (813)
Q Consensus 126 i~~~~~~~~~~~~~~~~~~~~g~~~~~~~----------~~~~i~e~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~ 195 (813)
.|++..+..|...| | ++|+|.++.+ .+..|.||+ .|.+|.|.| +...+++.+.+.+.+++
T Consensus 34 ~~~~~~~~~~~~~L---~-~~Gyf~~~~v~~~~~~~~~~l~~~v~eg~--~i~~i~~~G----~~~~~~~~l~~~~~~~~ 103 (235)
T 2x8x_X 34 TTTRTQLQQDTNAI---F-ATGFFADVNAVPRDTPLGVRITFVVRPYP--VLRAVQVAG----NQVLTQEKVNEIFAPQI 103 (235)
T ss_dssp EECHHHHHHHHHHH---H-TTSCEEEEEEEEEEETTEEEEEEEEEECC--BCCEEEEES----CSSSCHHHHHHHHGGGT
T ss_pred ccCHHHHHHHHHHH---H-HCCCcEEEEEEEecCCCcEEEEEEEEecc--eEEEEEEEC----CccCCHHHHHHHhCccC
Confidence 56666666666544 6 6888654333 344677876 899999995 45567788889999999
Q ss_pred CCcccHHHHHHHHHHHH----HcCCcc-eEEEEEEEcCCCceEEEEEEEeeecccceeEEEeeccccccccceecCc---
Q 039285 196 GGVYTRTQLLKELETLA----TCGMFE-KVDMEAKTKPDGTLGLTISFLESTWQSAERIRCINVGLMQQSKPIEMDA--- 267 (813)
Q Consensus 196 g~~~~~~~l~~d~~~L~----~~Gyf~-~V~~~~~~~~d~~~~v~i~~~v~e~p~g~~~k~~~vg~~~~~i~i~Gn~--- 267 (813)
|+.|+.+.++++.++|. ++||+. +|....+..+++ .|++.|+|++.. +|++ ..|.|+||.
T Consensus 104 G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~~----~l~~~v~eG~~~-~i~i-------~~i~~~G~~~~~ 171 (235)
T 2x8x_X 104 GRTLNLRELQAGIEKINTFYRDNGYILGQVVGTPQVDPDG----VVTLQVAEGVVE-QVTY-------RFLNKEGEPTKQ 171 (235)
T ss_dssp TSBCCHHHHHHHHHHHHHHHHHTTCTTCEEEEEEEECTTS----EEEEEEECCBEE-EEEE-------EEBCTTSCBCCC
T ss_pred CCCcCHHHHHHHHHHHHHHHHhCCCeeEEEEeecccCCCc----EEEEEEEeCceE-EEEE-------EEecccCCcCCC
Confidence 99999999999988774 499998 887765444443 467777754332 5554 345788886
Q ss_pred cCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHCCCc-eeEEeeeee
Q 039285 268 DMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDEGYA-CAQVVNFGN 346 (813)
Q Consensus 268 ~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~GY~-~a~V~~~~~ 346 (813)
.+.+.- ++..+. +++|++|+.+.+++++++|. +.||. .+.+.....
T Consensus 172 ~~~~~~----------------------------i~~~~~-~~~G~~~~~~~l~~~~~~L~----~~g~f~~v~i~~~~~ 218 (235)
T 2x8x_X 172 RTRDFV----------------------------ISREMD-TQPGVVLNQKTVQADLRRLF----ELGLFEDVQVALEPG 218 (235)
T ss_dssp CSCHHH----------------------------HHTTCS-CCTTSBCCHHHHHHHHHHHH----HHTCEEEEEEEEEEC
T ss_pred ccchhh----------------------------eeeeee-cCCCCccCHHHHHHHHHHHH----hcCCcccceEEeccC
Confidence 443322 223333 78999999999999999886 56986 455544332
Q ss_pred --ecCeEEEEEEeece
Q 039285 347 --LNTREVVCEVVEGD 360 (813)
Q Consensus 347 --~~~~~i~i~I~EG~ 360 (813)
.....|++.|.|++
T Consensus 219 ~~~~~~~l~i~v~e~~ 234 (235)
T 2x8x_X 219 QNPRRVNLILNIKERN 234 (235)
T ss_dssp SSTTSEEEEEEEEECC
T ss_pred CCCCeeEEEEEEEeCC
Confidence 12336888888875
No 11
>3mc9_A ALR2269 protein; polypeptide transport associated, potra, outer bacterial MEM protein membrane transport, beta barrel biogenesis, membran; 2.20A {Nostoc SP} PDB: 3mc8_A
Probab=98.74 E-value=4.9e-08 Score=105.32 Aligned_cols=145 Identities=13% Similarity=0.203 Sum_probs=100.8
Q ss_pred ccceeEEEeeccccccccceecC----ccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcCCCCeecHHH
Q 039285 244 QSAERIRCINVGLMQQSKPIEMD----ADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILKDHGKVSARL 319 (813)
Q Consensus 244 p~g~~~k~~~vg~~~~~i~i~Gn----~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~ 319 (813)
.+|+++++ .+|.|+|| ..+++++|+ +.+. +++|+.|+.+.
T Consensus 57 ~Eg~~~~I-------~~I~i~Gn~~~~~~~~~~~l~----------------------------~~l~-~k~G~~~~~~~ 100 (316)
T 3mc9_A 57 TTEPRVLV-------SEVLVRPQSGQLTPELETQVY----------------------------NVIR-TQPGRTTTRSQ 100 (316)
T ss_dssp -CCCCEEE-------EEEEEEESSSCCCHHHHHHHH----------------------------HHCC-CCTTSEECHHH
T ss_pred CCCCceEE-------EEEEEECCcccccccCHHHHH----------------------------hhcc-CCCCCccCHHH
Confidence 37888886 56689999 555554443 4444 78999999999
Q ss_pred HHHHHHHHHHHHHHCCCceeEEeeeeeec-C-eEEEEEEeeceeeeeEEeeeccCCceeecC------c--cHHHHHHhc
Q 039285 320 LQRIRDRVQKWYHDEGYACAQVVNFGNLN-T-REVVCEVVEGDITQLVVQFQDKLGNVVEGN------T--QLAVVKREL 389 (813)
Q Consensus 320 l~~~~~~I~~~Y~~~GY~~a~V~~~~~~~-~-~~i~i~I~EG~~~~i~i~~i~~~G~~i~Gn------t--~~~vI~r~l 389 (813)
+++++++|. +.|| |+.|......+ . ..|+|.|+||+... .| .|.|| + .++.|++.+
T Consensus 101 l~~di~~L~----~~Gy-F~~V~v~~~~~~~~v~l~~~V~egp~I~-~I--------~~~Gn~~~~~~~~~~~~~L~~~l 166 (316)
T 3mc9_A 101 LQEDINAIF----GTGF-FSNVQASPEDTPLGVRVSFIVQPNPVLS-KV--------EIQANPGTNVPSVLPQATADEIF 166 (316)
T ss_dssp HHHHHHHHH----HTSC-EEEEEEEEEEETTEEEEEEEEEECCBCC-EE--------EEECCC----CCSSCTTHHHHHH
T ss_pred HHHHHHHHH----HCCC-ceEEEEEEecCCCeEEEEEEEecCceEE-EE--------EEeccccccccccCCHHHHHHHh
Confidence 999987775 4799 56665443222 2 35889999997321 33 35566 4 577899999
Q ss_pred cccCCCCCccChHHHHHHHHHHh----cCCC-ceeeEeeecCCCCCCCeEEEEEEEEEcc
Q 039285 390 PKQLRQGNVFNIEAGKQALRNIN----SLSL-FSNIEVNPRPDEKNEGGIIVEIKLKELD 444 (813)
Q Consensus 390 ~~~l~~G~~yn~~~l~~~~~~L~----~~g~-F~~V~i~~~~~~~~~~~v~l~i~V~E~~ 444 (813)
. +++|++|+...+++..++|. +.|| |..|.+.+.... .+ + |.|.|.|+.
T Consensus 167 ~--l~~G~~~n~~~l~~~~~~I~~~y~~~GY~~A~V~~~~~~~~--~g-~-l~i~V~eG~ 220 (316)
T 3mc9_A 167 R--AQYGKILNLRDLQEGIKELTKRYQDQGYVLANVVGAPQVSE--NG-V-VTLQVAEGV 220 (316)
T ss_dssp G--GGTTSBCCHHHHHHHHHHHHHHHHHTTCTTCEECSSCEECT--TS-E-EEEEEECCE
T ss_pred c--ccCCCeeCHHHHHHHHHHHHHHHHHCCCeeEEeeeccEECC--CC-E-EEEEEEcCc
Confidence 8 99999999999998777663 5787 556654332222 23 3 889999983
No 12
>2qdz_A TPSB transporter FHAC; beta barrel, potra domain, membrane, protein transport; 3.15A {Bordetella pertussis} PDB: 3njt_A
Probab=98.72 E-value=2.5e-06 Score=99.25 Aligned_cols=267 Identities=9% Similarity=-0.003 Sum_probs=156.9
Q ss_pred ecC---ccceEEEEEEEEeccCCcccCChhhHhhhcccCCCCcccHHHHHHHHHHHH----HcCCcc-eEEEEEEEcCCC
Q 039285 159 LSG---FRKYKLSEILFFDRQRGATVGTEDSFFEMVSLRPGGVYTRTQLLKELETLA----TCGMFE-KVDMEAKTKPDG 230 (813)
Q Consensus 159 i~e---~~~~~I~~I~f~G~~~g~~~~~~~~l~~~l~~~~g~~~~~~~l~~d~~~L~----~~Gyf~-~V~~~~~~~~d~ 230 (813)
..| |++++|++|+|+| +...+++.+.+.+..++|+.|+.+.|++++++|. ++||+. +|.+......++
T Consensus 50 ~~e~~~g~~~~i~~I~~~G----~~~~~~~~l~~~~~~~~G~~~~~~~l~~~~~~i~~~y~~~GY~~a~v~~~~~~~~~g 125 (554)
T 2qdz_A 50 KPDATSGHTVTVHAVDLDF----GVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDG 125 (554)
T ss_dssp ---CBCCCSSSSCCEEEEC----CSSSCCCSCSTTSTTSSSSCBCSTTHHHHHHHHHHHHHHTTCTTCEEEEEEEEEETT
T ss_pred CccccCCceEEEEEEEEEC----CccCCHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHHcCceeeeEEcccccccCC
Confidence 357 8999999999996 4455666777888888999999999999988884 499998 885533222343
Q ss_pred ceEEEEEEEeeecccceeEEEeeccccccccceecCccCChHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHhhcC
Q 039285 231 TLGLTISFLESTWQSAERIRCINVGLMQQSKPIEMDADMTEREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQILK 310 (813)
Q Consensus 231 ~~~v~i~~~v~e~p~g~~~k~~~vg~~~~~i~i~Gn~~~~~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~~lk 310 (813)
+|++.|.|+ + + .+|.|+||...++..++... ..+. ++
T Consensus 126 ----~l~i~v~eG---~-i---------~~I~i~G~~~~~~~~l~~~~-------------------------~~~~-~~ 162 (554)
T 2qdz_A 126 ----VLKLKVEWG---R-I---------KGWLIDGKPLEGTRDRMMVF-------------------------SAMP-GW 162 (554)
T ss_dssp ----EEEEEEECC---E-E---------EEEEETTEECCSHHHHHHHH-------------------------HHST-TC
T ss_pred ----EEEEEEEeE---E-E---------EEEEECCCCccchhhhhhhh-------------------------hhcc-cc
Confidence 267777754 2 1 23467898776655443200 0333 78
Q ss_pred CCCeecHHHHHHHHHHHHHHHHHCCCceeEEeeeeeecC--eEEEEEEeeceeeeeEEeeeccCCceeec--CccHHHHH
Q 039285 311 DHGKVSARLLQRIRDRVQKWYHDEGYACAQVVNFGNLNT--REVVCEVVEGDITQLVVQFQDKLGNVVEG--NTQLAVVK 386 (813)
Q Consensus 311 ~g~~~~~~~l~~~~~~I~~~Y~~~GY~~a~V~~~~~~~~--~~i~i~I~EG~~~~i~i~~i~~~G~~i~G--nt~~~vI~ 386 (813)
+|++|+.++|++.+++|.+. + ..+.+......++ ..|+|+|.|++...+.+-+- -.| .+.
T Consensus 163 ~G~~~n~~~le~~~~~L~~~----~-~~v~~~~~p~~~~g~~~l~v~v~e~~~~~~~~g~~------~~g~g~~~----- 226 (554)
T 2qdz_A 163 QDKVLNVFDIDQAIYNINNG----G-KTGNITIVPADEYGYSYLDLQLQRRALPRVSLGMD------NSGPGTPE----- 226 (554)
T ss_dssp TTCBCCHHHHHHHHHHHCSS----S-EEEEEEEEECSSTTEEEEEEEEEECCSCEEEEEEE------ECSCSSSC-----
T ss_pred CCCcCCHHHHHHHHHHHhcC----c-hhceEEEecCCCCCeeEEEEEEeeCCcEEEEEEEc------CCCCCCCC-----
Confidence 99999999999999888654 4 4444443332222 35888898887655432210 011 100
Q ss_pred HhccccCCCCCccChHHHHHHHHHHhcCC-CceeeEeeecCCCCCCCeEEEEEEEEE----ccCceEEEeEEEeecCCCC
Q 039285 387 RELPKQLRQGNVFNIEAGKQALRNINSLS-LFSNIEVNPRPDEKNEGGIIVEIKLKE----LDQKSAEVSAEWSLVPGRG 461 (813)
Q Consensus 387 r~l~~~l~~G~~yn~~~l~~~~~~L~~~g-~F~~V~i~~~~~~~~~~~v~l~i~V~E----~~~~~~~lg~g~s~~~G~~ 461 (813)
. | +--.+.+....--...+.+.+.+.+.+ ++.....++++|+..-+
T Consensus 227 ------t---------------------g~~~~~~~~~~~n~~g~gd~l~~~~~~~~~~~~~~~~~~~~~~~y~~P~~-- 277 (554)
T 2qdz_A 227 ------N---------------------GRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLG-- 277 (554)
T ss_dssp ------S---------------------SCEEEEEEEEEECSSSSSCEEEEEEEEECCSCCSSCEEEEEEEEEEEEET--
T ss_pred ------c---------------------cceEEEEEEEeCCCCCCCcEEEEEEEecCccccCCCCceEEEEEEEEEEe--
Confidence 0 1 101111211111112367888888876 34456777777877532
Q ss_pred CCCCcccCCCeEEEEEeeec--ccCCcceEEEEEEeecccCCCccceEEEEEEeccccCCCCCCcceEEEEEeec
Q 039285 462 GRPTFASLQPGGTVSFEHRN--LQGLNRSILGSVTTSNFLNPQDDLAFKLEYVHPYLDGVYNPRNRTFRASCFNS 534 (813)
Q Consensus 462 G~st~~~~~~~~~~s~~~~N--l~G~G~~l~~~~~~s~~~~~~~~~~~~lsy~~P~l~~~~~p~~~s~~~~~~~~ 534 (813)
+ .++ .+.+.+.+.| +.|.+..+... .....+.+.+..|+.... ...+++++.+.+.
T Consensus 278 -~---~~~--~~~~~~~~~~~~~~~~~~~~~~~---------~~s~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 335 (554)
T 2qdz_A 278 -R---TRL--DLQTGYSTYRNLLKTRYGQYQSA---------GNSRSFGLKATRLLYRDT--RSQFSVYGGLKLR 335 (554)
T ss_dssp -T---EEE--EEEEEEEEEECCCSSSSCCCCCE---------EEEEEEEEEEEEEEECCS--SEEEEEEEEEEEE
T ss_pred -c---CeE--EEEEEEeEEEEEccCCcceEEEE---------eeEEEEEEEEEEEEEECC--CeEEEEEEEEEEE
Confidence 1 122 5566666654 54544322221 244678888999976541 1234555555444
No 13
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=47.98 E-value=5.4 Score=38.82 Aligned_cols=12 Identities=58% Similarity=1.049 Sum_probs=4.5
Q ss_pred cCCCCCCCCCCC
Q 039285 97 LGGGSGGDGFGG 108 (813)
Q Consensus 97 ~~~~~~~~~~~~ 108 (813)
+||++|.||.|+
T Consensus 176 sg~~~~~~~~~~ 187 (215)
T 2l6f_A 176 SGSGSGSGGSGG 187 (215)
Confidence 343333333333
No 14
>2vh1_A FTSQ, cell division protein FTSQ; potra, membrane, septation, cell cycle, transmembrane, inner membrane; 2.7A {Escherichia coli}
Probab=41.04 E-value=49 Score=32.43 Aligned_cols=66 Identities=15% Similarity=0.267 Sum_probs=44.8
Q ss_pred EEEEEEEeccCCcc-cCChhhHhhhc-ccCCCCcccHHHHHHHHHHHH-HcCCcceEEEEEEEcCCCceEEEEEEEe
Q 039285 167 LSEILFFDRQRGAT-VGTEDSFFEMV-SLRPGGVYTRTQLLKELETLA-TCGMFEKVDMEAKTKPDGTLGLTISFLE 240 (813)
Q Consensus 167 I~~I~f~G~~~g~~-~~~~~~l~~~l-~~~~g~~~~~~~l~~d~~~L~-~~Gyf~~V~~~~~~~~d~~~~v~i~~~v 240 (813)
|++|.|.| +. .++++.|.+.+ .+..|..+-.-.+++-.++|. +.-+.++|++.. .-|+ .+.|.+.+
T Consensus 1 v~~V~V~G----~~~~~s~~~I~~~~~~~~~~~~~~~vd~~~i~~~l~~~~P~V~~a~V~r-~~P~---~l~I~V~E 69 (220)
T 2vh1_A 1 MSKLVLTG----ERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQRLPWIKQVSVRK-QWPD---ELKIHLVE 69 (220)
T ss_dssp -CEEEEES----CCSSCCHHHHHHHHHTTSCTTCGGGSCHHHHHHHHHHHCTTEEEEEEEE-ETTT---EEEEEEEE
T ss_pred CcEEEEeC----CCccCCHHHHHHHHhhccCCCCeEEECHHHHHHHHHhcCCCEEEEEEEE-eCCC---ceEEEEEE
Confidence 56899995 55 58889999988 566655554445555556888 889999888774 4565 35455544
No 15
>2vh2_A FTSQ, cell division protein FTSQ; potra, cell cycle; 3.4A {Yersinia enterocolitica}
Probab=32.58 E-value=51 Score=33.35 Aligned_cols=71 Identities=17% Similarity=0.261 Sum_probs=45.8
Q ss_pred ccceEEEEEEEEeccCCcc-cCChhhHhhhc-ccCCCCcccHHHHHHHHHHHHHcCCcceEEEEEEEcCCCceEEEEEEE
Q 039285 162 FRKYKLSEILFFDRQRGAT-VGTEDSFFEMV-SLRPGGVYTRTQLLKELETLATCGMFEKVDMEAKTKPDGTLGLTISFL 239 (813)
Q Consensus 162 ~~~~~I~~I~f~G~~~g~~-~~~~~~l~~~l-~~~~g~~~~~~~l~~d~~~L~~~Gyf~~V~~~~~~~~d~~~~v~i~~~ 239 (813)
-+.+.|++|.|.| +. .++++.|.+.+ .+..|..+-.-.+++-.++|.+.-+.++|++.. .-|+ .+.|.+.
T Consensus 23 sp~f~v~~I~V~G----~~~~vs~~eI~~~~~~~~~g~~~~~vd~~~i~~~l~~~PwV~~a~V~r-~~P~---~L~I~V~ 94 (255)
T 2vh2_A 23 SSRLPLSKLVVTG----ERHYTTNDDIRQAILSLGAPGTFMTQDVNIIQQQIERLPWIQQASVRK-QWPD---ELKIHLV 94 (255)
T ss_dssp ----CCCEEEEES----CCSSCCHHHHHHHHTTSCCSSTTTSCHHHHHHHHTSCCSSEEEEEEEE-ETTT---EEEEEEE
T ss_pred CCCceEeEEEEEC----CCcccCHHHHHHHHhcccCCCccEEEcHHHHHHHHHcCCCeeEEEEEE-ECCC---eEEEEEE
Confidence 3456789999995 45 47888999987 566655554445555556777788888887775 3455 3545554
Q ss_pred e
Q 039285 240 E 240 (813)
Q Consensus 240 v 240 (813)
+
T Consensus 95 E 95 (255)
T 2vh2_A 95 E 95 (255)
T ss_dssp E
T ss_pred E
Confidence 4
Done!