Query 039285
Match_columns 813
No_of_seqs 369 out of 2314
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 13:41:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039285.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039285hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fnaa1 a.4.5.11 (A:284-356) H 26.8 17 0.0012 27.5 2.5 35 185-219 22-56 (73)
2 d1qjpa_ f.4.1.1 (A:) Outer mem 16.5 1.8E+02 0.013 24.0 8.1 78 733-813 77-170 (171)
3 d1vqza1 d.224.1.3 (A:242-329) 14.6 93 0.0068 23.9 4.7 60 351-421 19-78 (88)
4 d1t6sa1 a.4.5.60 (A:1-85) Segr 14.2 1.2E+02 0.009 22.8 5.4 43 294-341 20-64 (85)
5 d2cc0a1 c.6.2.3 (A:1-192) Acet 10.8 1.1E+02 0.0083 26.7 4.7 35 309-343 146-184 (192)
6 d1fw4a_ a.39.1.5 (A:) Calmodul 9.6 1.1E+02 0.0082 21.4 3.4 33 290-324 13-45 (65)
7 d2hf5a1 a.39.1.5 (A:81-113) Tr 9.5 1.3E+02 0.0095 18.7 3.2 29 271-307 2-30 (33)
8 d1eexg_ a.23.2.1 (G:) Diol deh 9.2 1.6E+02 0.012 24.4 4.5 40 294-334 75-114 (137)
9 d1qj8a_ f.4.1.1 (A:) Outer mem 8.3 3.1E+02 0.022 22.3 6.5 37 777-813 105-148 (148)
10 d1x2ga1 d.224.1.3 (A:247-337) 8.3 2.2E+02 0.016 21.7 4.9 51 351-412 19-69 (91)
No 1
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=26.80 E-value=17 Score=27.53 Aligned_cols=35 Identities=14% Similarity=0.158 Sum_probs=31.5
Q ss_pred hhHhhhcccCCCCcccHHHHHHHHHHHHHcCCcce
Q 039285 185 DSFFEMVSLRPGGVYTRTQLLKELETLATCGMFEK 219 (813)
Q Consensus 185 ~~l~~~l~~~~g~~~~~~~l~~d~~~L~~~Gyf~~ 219 (813)
+.|+..+..+.|..++...|.+.+++|.+.||.++
T Consensus 22 s~IK~yle~~~G~~I~d~~ls~lL~nL~k~~~iek 56 (73)
T d2fnaa1 22 SDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIK 56 (73)
T ss_dssp HHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHHcCceee
Confidence 45788888889999999999999999999999974
No 2
>d1qjpa_ f.4.1.1 (A:) Outer membrane protein A (OMPA) transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=16.48 E-value=1.8e+02 Score=24.02 Aligned_cols=78 Identities=18% Similarity=0.273 Sum_probs=35.8
Q ss_pred eEEeEEEEEEec-ceeEEEEEeecccCCCCCCCCCCCccccccCCceeeeeEEEE--Ee---eEEEEEEEecC-------
Q 039285 733 LELGAEIRIPVK-NTHVYAFVEHGNDLGSSKDVKGNPTEVYRRMGHGSSYGVGAK--LG---LVRAEYAVDHN------- 799 (813)
Q Consensus 733 ~~~s~Elr~pl~-~~~~~~F~D~G~vw~~~~~~~~~~~~~~~~~~~~~s~G~Glr--lG---pirld~a~~~~------- 799 (813)
+.+++-+++|+. .+..++.+-++........ +.........+...+|+|+. |- -+|++|-+-..
T Consensus 77 ~~l~~~~~~~~~~~~~~y~~~G~~~~~~~~~~---~~~~~~~~~~~~~~~G~G~~y~i~~~~~l~~ey~~~~~~~~~~~~ 153 (171)
T d1qjpa_ 77 VQLTAKLGYPITDDLDIYTRLGGMVWRADTYS---NVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQWTNNIGDAHTI 153 (171)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEEEEEEEEC---SSSCEEEEEEEEEEEEEEEEEEEETTEEEEEEEEEEC--------
T ss_pred EEEEEEEEEecCCceeEEEEeeeEEEEEEeec---ccccccccCccceEEEeEEEEEeCCCEEEEEEEEEEeccCccccc
Confidence 456667777875 3555444443322111100 00000011224556667766 54 36777766211
Q ss_pred ---CCCeEEEEEeccCC
Q 039285 800 ---TGTGALFFRFGERY 813 (813)
Q Consensus 800 ---~~~~~f~F~iG~~F 813 (813)
.....+.+++..+|
T Consensus 154 ~~~~~~~~~~~G~~Y~F 170 (171)
T d1qjpa_ 154 GTRPDNGMLSLGVSYRF 170 (171)
T ss_dssp ------CEEEEEEEEEC
T ss_pred cccccccEEEEEEEEEC
Confidence 11345666666665
No 3
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=14.61 E-value=93 Score=23.88 Aligned_cols=60 Identities=28% Similarity=0.398 Sum_probs=38.8
Q ss_pred EEEEEEeeceeeeeEEeeeccCCceeecCccHHHHHHhccccCCCCCccChHHHHHHHHHHhcCCCceeeE
Q 039285 351 EVVCEVVEGDITQLVVQFQDKLGNVVEGNTQLAVVKRELPKQLRQGNVFNIEAGKQALRNINSLSLFSNIE 421 (813)
Q Consensus 351 ~i~i~I~EG~~~~i~i~~i~~~G~~i~Gnt~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L~~~g~F~~V~ 421 (813)
++.++|..|.+..+.+. -| +-+...-..|...| .|-+|+.+.+.+.+..+.-..||.++.
T Consensus 19 ev~l~V~~G~I~~iki~-GD-----ff~~~~i~~le~~L-----~G~~y~~~~i~~~L~~~~~~~Yf~~i~ 78 (88)
T d1vqza1 19 EVFANVTESKIQDIKIY-GD-----FFGIEDVAAVEDVL-----RGVKYEREDVLKALKTIDITRYFAGIS 78 (88)
T ss_dssp EEEEEEETTEEEEEEEE-ES-----CCCSSCTHHHHHHH-----TTCBSSHHHHHHHHTTSCGGGTSTTCC
T ss_pred EEEEEEeCCEEEEEEEE-ec-----CCCchhHHHHHHHH-----cCCCCCHHHHHHHHHhCCHHHHhCCCC
Confidence 46788999998877443 11 11222234455555 489999999999888775555776543
No 4
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=14.24 E-value=1.2e+02 Score=22.83 Aligned_cols=43 Identities=14% Similarity=0.155 Sum_probs=31.0
Q ss_pred CCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHH--CCCceeEE
Q 039285 294 PCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHD--EGYACAQV 341 (813)
Q Consensus 294 ~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~--~GY~~a~V 341 (813)
...++.+.|.+++. ...+...+.+..+.|.+.|.+ +|+...++
T Consensus 20 ~~Pls~~~L~~~l~-----~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~ 64 (85)
T d1t6sa1 20 EEPVNLQTLSQITA-----HKFTPSELQEAVDELNRDYEATGRTFRIHAI 64 (85)
T ss_dssp SSCBCHHHHHHHTT-----CCCCHHHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred CCCCCHHHHHHHHc-----cCCCHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 34577777777763 457788999999999999966 56544443
No 5
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces lividans [TaxId: 1916]}
Probab=10.76 E-value=1.1e+02 Score=26.75 Aligned_cols=35 Identities=9% Similarity=0.053 Sum_probs=24.7
Q ss_pred cCCCCeec----HHHHHHHHHHHHHHHHHCCCceeEEee
Q 039285 309 LKDHGKVS----ARLLQRIRDRVQKWYHDEGYACAQVVN 343 (813)
Q Consensus 309 lk~g~~~~----~~~l~~~~~~I~~~Y~~~GY~~a~V~~ 343 (813)
+++|.++= ...--+....|.++++++||.++.|.+
T Consensus 146 ~~~G~IiL~Hd~~~~t~~aL~~ii~~lk~~Gy~fvtlse 184 (192)
T d2cc0a1 146 LGNGQVILMHDWPANTLAAIPRIAQTLAGKGLCSGMISP 184 (192)
T ss_dssp CCTTCEEEEESSCHHHHHHHHHHHHHHHHTTEEECEECT
T ss_pred cCCCeEEEEeCCchhHHHHHHHHHHHHHHCCCEEEEccc
Confidence 56666551 222334578899999999999999864
No 6
>d1fw4a_ a.39.1.5 (A:) Calmodulin {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.61 E-value=1.1e+02 Score=21.41 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=18.9
Q ss_pred cccCCCCCChhHHHHHHhhcCCCCeecHHHHHHHH
Q 039285 290 DKARPCLLPQSVHNEILQILKDHGKVSARLLQRIR 324 (813)
Q Consensus 290 ~~~g~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~ 324 (813)
+..+...|+.++++.++. .-|..++...++...
T Consensus 13 D~d~~G~I~~~el~~~l~--~lg~~~~~~e~~~l~ 45 (65)
T d1fw4a_ 13 DKDGNGYISAAELRHVMT--NLGEKLTDEEVDEMI 45 (65)
T ss_dssp CTTCSSEECHHHHHHHHH--HTTCCCCHHHHHHHH
T ss_pred cCCCCCcCCHHHHHHHHH--HhCCCCCHHHHHHHH
Confidence 334455566667766665 336666666655443
No 7
>d2hf5a1 a.39.1.5 (A:81-113) Troponin C {Human (Homo sapiens), cardiac isoform [TaxId: 9606]}
Probab=9.54 E-value=1.3e+02 Score=18.65 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=17.6
Q ss_pred hHHHHHHhhhhhhhhhhhccccCCCCCChhHHHHHHh
Q 039285 271 EREKLEYYQSQEKDYKRRIDKARPCLLPQSVHNEILQ 307 (813)
Q Consensus 271 ~~~l~~~~~~~~~~y~~~i~~~g~~~l~~~~l~~~~~ 307 (813)
+++|+++++. -++.|+-.+..++|+.++.
T Consensus 2 eeel~eAF~~--------FDkDg~G~Is~~EL~~vm~ 30 (33)
T d2hf5a1 2 EEEIREAFRV--------FDKDGNGYISAAELRHVMT 30 (33)
T ss_dssp HHHHHHHHHH--------HSSSCCSCBCHHHHHHHTT
T ss_pred HHHHHHHHHH--------hCCCCCCcCcHHHHHHHHH
Confidence 4566666553 2445666677777776654
No 8
>d1eexg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella oxytoca [TaxId: 571]}
Probab=9.15 E-value=1.6e+02 Score=24.39 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=33.3
Q ss_pred CCCCChhHHHHHHhhcCCCCeecHHHHHHHHHHHHHHHHHC
Q 039285 294 PCLLPQSVHNEILQILKDHGKVSARLLQRIRDRVQKWYHDE 334 (813)
Q Consensus 294 ~~~l~~~~l~~~~~~lk~g~~~~~~~l~~~~~~I~~~Y~~~ 334 (813)
.+.+|.+.+.++...|+|+.- +.++|....+.|.+.|+..
T Consensus 75 Lt~vpD~rvLeiYnaLRP~RS-tk~ELl~iA~eL~~~Y~A~ 114 (137)
T d1eexg_ 75 LTAVPDDRILEIYNALRPYRS-TKEELLAIADDLESRYQAK 114 (137)
T ss_dssp HTTSCHHHHHHHHHHHSTTSC-CHHHHHHHHHHHHHHHCCH
T ss_pred cccCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHHhCcH
Confidence 346899999999988898886 8888999999999888653
No 9
>d1qj8a_ f.4.1.1 (A:) Outer membrane protein X (OMPX) {Escherichia coli [TaxId: 562]}
Probab=8.28 E-value=3.1e+02 Score=22.26 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=24.5
Q ss_pred ceeeeeEEEE--Ee---eEEEEEEEecCC--CCeEEEEEeccCC
Q 039285 777 HGSSYGVGAK--LG---LVRAEYAVDHNT--GTGALFFRFGERY 813 (813)
Q Consensus 777 ~~~s~G~Glr--lG---pirld~a~~~~~--~~~~f~F~iG~~F 813 (813)
+...+|+|+. +- -+|++|-+...+ ....|.++++.+|
T Consensus 105 ~g~~~G~Gvey~l~~n~~~~~eY~~~~~~~~d~~~~~~Gv~YrF 148 (148)
T d1qj8a_ 105 YGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF 148 (148)
T ss_dssp EEEEEEEEEEECSSTTEEEEEEEEEEEETTEEEEEEEEEEEEEC
T ss_pred cceeEeeeEEEEecCCEEEEEEEEEEeCCCceeeeEEEEEEEEC
Confidence 5577888888 43 367777663221 2467888888877
No 10
>d1x2ga1 d.224.1.3 (A:247-337) Two-domain LplA, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=8.28 E-value=2.2e+02 Score=21.68 Aligned_cols=51 Identities=24% Similarity=0.302 Sum_probs=31.9
Q ss_pred EEEEEEeeceeeeeEEeeeccCCceeecCccHHHHHHhccccCCCCCccChHHHHHHHHHHh
Q 039285 351 EVVCEVVEGDITQLVVQFQDKLGNVVEGNTQLAVVKRELPKQLRQGNVFNIEAGKQALRNIN 412 (813)
Q Consensus 351 ~i~i~I~EG~~~~i~i~~i~~~G~~i~Gnt~~~vI~r~l~~~l~~G~~yn~~~l~~~~~~L~ 412 (813)
++.++|..|.+..+.+. -|- -+...-..|...| .|-+|+.+.+.+.+..+.
T Consensus 19 e~~l~V~~G~I~~~~i~-gDf-----l~~~~i~~le~~L-----~G~~y~~~~i~~~l~~~~ 69 (91)
T d1x2ga1 19 ELHFDVEKGHITRAQVF-TDS-----LNPAPLEALAGRL-----QGCLYRADMLQQECEALL 69 (91)
T ss_dssp EEEEEEETTEEEEEEEE-ECC-----SCCHHHHHHHHHH-----TTCBSSHHHHHHHHHHTG
T ss_pred EEEEEEeCCEEEEEEEE-cCC-----CCcHHHHHHHHHH-----cCCCcCHHHHHHHHHHHH
Confidence 46788999998887433 111 0111122333333 489999999999988775
Done!