Query 039286
Match_columns 191
No_of_seqs 104 out of 330
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 08:11:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01569 A_tha_TIGR01569 plan 100.0 3.5E-38 7.6E-43 254.0 14.6 141 28-185 1-154 (154)
2 PF04535 DUF588: Domain of unk 100.0 3.2E-33 6.8E-38 222.7 12.9 135 21-173 1-149 (149)
3 PF01284 MARVEL: Membrane-asso 96.1 0.037 7.9E-07 42.2 8.0 129 24-179 3-143 (144)
4 PHA03048 IMV membrane protein; 22.4 3.4E+02 0.0074 20.3 5.8 54 117-184 15-68 (93)
5 PF14880 COX14: Cytochrome oxi 18.8 1.9E+02 0.004 19.4 3.4 38 153-190 6-44 (59)
6 PHA02898 virion envelope prote 18.7 3.7E+02 0.0081 20.1 5.2 55 117-185 15-70 (92)
7 smart00574 POX domain associat 16.1 1.1E+02 0.0024 24.6 2.0 45 146-191 87-136 (140)
8 PF07526 POX: Associated with 15.6 1E+02 0.0023 24.5 1.8 45 146-191 87-136 (140)
9 COG3647 Predicted membrane pro 15.4 5.5E+02 0.012 21.6 5.9 35 129-170 162-196 (205)
10 PF05702 Herpes_UL49_5: Herpes 14.3 2.7E+02 0.0058 21.1 3.6 47 137-184 37-83 (98)
No 1
>TIGR01569 A_tha_TIGR01569 plant integral membrane protein TIGR01569. This model describes a region of ~160 residues found exclusively in plant proteins, generally as the near complete length of the protein. At least 24 different members are found in Arabidopsis thaliana. Members have four predicted transmembrane regions, the last of which is preceded by an invariant CXXXXX[FY]C motif. The family is not functionally characterized.
Probab=100.00 E-value=3.5e-38 Score=253.95 Aligned_cols=141 Identities=36% Similarity=0.545 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccceeecCCCcceeeEeEEEeecchhHHHHH------HHHHH-------Hhhccccch
Q 039286 28 IALRILLFVFSFVAILLIVTSKQTNLFPVPGTTFSVKIPAKFTYFPAFIFITA------LTSLS-------AIRKLAYRK 94 (191)
Q Consensus 28 l~LR~la~~~sl~A~vvM~t~~qt~~~~~~~~~~~~~~~ak~~d~~Af~yl~~------~~S~~-------~~~~~~~~~ 94 (191)
++||+++++++++|+++|+|||||.++.. +.+++++||+|+++|+|++. .|++. .+++++ ..
T Consensus 1 l~LR~~~~~~sl~A~vvm~t~~qt~~~~~----~~~~~~a~f~d~~af~y~v~anai~~~Ysll~l~~~~~~~~~~~-~~ 75 (154)
T TIGR01569 1 LILRVLAFSATLAAAIVMGTNRETKVVFV----QLITFKAKFSDLPAFVYFVVANAIACGYSLLSLVVSIFGLLKRR-VF 75 (154)
T ss_pred CcHHHHHHHHHHHHHHHhhcccceeeeec----ccceeeeeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ch
Confidence 46999999999999999999999998721 13788999999999999743 35541 122222 22
Q ss_pred hhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCchhhhhhhhhhHhhHHHHHHHHHHHHHHHH
Q 039286 95 RLLLLIAFLDTFHHVEIVPMMQLMLGVVASAIGAALAVAYIGLKGNSHAGWNKVANAGYDKFIKHTATAIALSIFAVTDL 174 (191)
Q Consensus 95 ~~~w~~f~~D~~~~~~~~~~~~v~~yll~Sa~aAA~av~~l~~~G~~~~~W~~vC~~~~~~FC~~~~~Si~lsflA~~~l 174 (191)
...|++|++|| +++|+++||++||++++|++++||+|++|+|+|++ |++||||+++|++++|+|++++
T Consensus 76 ~~~~~~f~~D~-----------v~~~Ll~sa~sAA~av~~l~~~G~~~~~W~~iC~~-~~~FC~~~~~sl~~s~~a~v~~ 143 (154)
T TIGR01569 76 FKLIALFFLDL-----------VMLALLSSGTSAAAAVAYVGKLGNKEAGWLKICGV-FGKFCDRIAGSLALSLFAVILL 143 (154)
T ss_pred hHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHccccccchhhHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999 99999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhHhh
Q 039286 175 VTLTMHSTYTL 185 (191)
Q Consensus 175 ~~ls~lSa~~L 185 (191)
++++++|++++
T Consensus 144 ~llsv~Sa~~~ 154 (154)
T TIGR01569 144 VLLSILSAISL 154 (154)
T ss_pred HHHHHHHHhcC
Confidence 99999999975
No 2
>PF04535 DUF588: Domain of unknown function (DUF588); InterPro: IPR006702 This family of plant proteins contains a domain that may have a catalytic activity. It has a conserved arginine and aspartate that could form an active site. These proteins are predicted to contain 3 or 4 transmembrane helices.
Probab=100.00 E-value=3.2e-33 Score=222.68 Aligned_cols=135 Identities=37% Similarity=0.566 Sum_probs=119.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhccccceeecCCCcceeeEeEEEeecchhHHHH------HHHHHH-------Hh
Q 039286 21 VIYFRIDIALRILLFVFSFVAILLIVTSKQTNLFPVPGTTFSVKIPAKFTYFPAFIFIT------ALTSLS-------AI 87 (191)
Q Consensus 21 ~~~~~~~l~LR~la~~~sl~A~vvM~t~~qt~~~~~~~~~~~~~~~ak~~d~~Af~yl~------~~~S~~-------~~ 87 (191)
|..+.++++||+++++++++|+++|++|+||.++ ..++++++|+|+++|+|++ ++|++. .+
T Consensus 1 ~~~~~~~l~LR~~~~~~sl~a~~vm~t~~qt~~~------~~~~~~~~f~~~~af~ylv~a~~i~~~Ysl~~~~~~~~~~ 74 (149)
T PF04535_consen 1 RSLRIASLVLRLLAFVLSLAALAVMATNKQTVSV------FSIQFTAKFSDYPAFRYLVAANVIACVYSLLQLVLSIYSL 74 (149)
T ss_pred CCchhhhHHHHHHHHHHHHHHHHHHHhcCCccee------eccccceeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999999999999999999988 3678899999999999973 346641 12
Q ss_pred -hccccchhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCchhhhhhhhhhHhhHHHHHHHH
Q 039286 88 -RKLAYRKRLLLLIAFLDTFHHVEIVPMMQLMLGVVASAIGAALAVAYIGLKGNSHAGWNKVANAGYDKFIKHTATAIAL 166 (191)
Q Consensus 88 -~~~~~~~~~~w~~f~~D~~~~~~~~~~~~v~~yll~Sa~aAA~av~~l~~~G~~~~~W~~vC~~~~~~FC~~~~~Si~l 166 (191)
+++..++...|++|++|| +++|+++||++||++++|++++||+|++|+++|+. |++||+|+++|+++
T Consensus 75 ~~~~~~~~~~~~~~f~~Dq-----------v~~~ll~sa~~Aa~~~~~~~~~g~~~~~W~~vC~~-~~~FC~~~~~sv~l 142 (149)
T PF04535_consen 75 SRGKLRSKLLAWFLFILDQ-----------VLAYLLFSAASAAAAVAYLGKKGNSHVQWSKVCSQ-FGKFCNRAAASVAL 142 (149)
T ss_pred HccCCcccchhhhhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHhccccccchhhccc-hhhHHHHHHHHHHH
Confidence 222345678999999999 99999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHH
Q 039286 167 SIFAVTD 173 (191)
Q Consensus 167 sflA~~~ 173 (191)
+|+|+++
T Consensus 143 sf~a~~~ 149 (149)
T PF04535_consen 143 SFLAFVA 149 (149)
T ss_pred HHHHHHC
Confidence 9999864
No 3
>PF01284 MARVEL: Membrane-associating domain; InterPro: IPR021128 This entry represents the ~130-residue MARVEL (MAL and related proteins for vesicle trafficking and membrane link) domain. The MARVEL domain is a module with a four transmembrane-helix architecture that has been identified in proteins of the myelin and lymphocyte (MAL), physins, gyrins and occludin families. All described MARVEL domain-containing proteins are consistent with the M-shaped topology: four transmembrane-helix region architecture with cytoplasmic N- and C-terminal regions. Their function could be related to cholesterol-rich membrane apposition events in a variety of cellular processes, such as biogenesis of vesicular transport carriers or tight junction regulation [].
Probab=96.15 E-value=0.037 Score=42.18 Aligned_cols=129 Identities=19% Similarity=0.020 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccccceeecCCCcceeeEeEEEeecchhHHH--HHH----HHH----HHh-h-ccc
Q 039286 24 FRIDIALRILLFVFSFVAILLIVTSKQTNLFPVPGTTFSVKIPAKFTYFPAFIFI--TAL----TSL----SAI-R-KLA 91 (191)
Q Consensus 24 ~~~~l~LR~la~~~sl~A~vvM~t~~qt~~~~~~~~~~~~~~~ak~~d~~Af~yl--~~~----~S~----~~~-~-~~~ 91 (191)
+....++|++-++++++...+++....+... ......+...|. +.. +++ ..+ + +..
T Consensus 3 ~s~~~ilR~lq~~~~~i~~~l~~~~~~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~ 70 (144)
T PF01284_consen 3 RSPSGILRILQLVFALIIFGLVASSIATGSQ------------IYGGSPSACGFALFVAVLSFLYTLIFLLLYLFSLKYR 70 (144)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHHhcccc------------ccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3467899999999999999999887743221 111223334442 111 221 111 1 112
Q ss_pred cchhhhhhhhhccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCchhhhhhhhhhHhhHHHHHHHHHHHHH
Q 039286 92 YRKRLLLLIAFLDTFHHVEIVPMMQLMLGVVASAIGAALAVAYIGLKGNSHAGWNKVANAGYDKFIKHTATAIALSIFAV 171 (191)
Q Consensus 92 ~~~~~~w~~f~~D~~~~~~~~~~~~v~~yll~Sa~aAA~av~~l~~~G~~~~~W~~vC~~~~~~FC~~~~~Si~lsflA~ 171 (191)
.+....+..+..|. ++..+-+.+..+-+.-....+.+++ ++..+.. .++-|+...++.+++++..
T Consensus 71 ~~~~~~~~~~~~~~-----------v~~il~l~a~~~~a~~~~~~~~~~~---~~~~~~~-~~~~~~~~~Aa~~f~~~~~ 135 (144)
T PF01284_consen 71 PRIPWPLVEFIFDA-----------VFAILWLAAFIALAAYLSDHSCSNT---GNDYSYS-GCSRCGAWKAAAAFGFLNW 135 (144)
T ss_pred cccccchhHHHHHH-----------HHHHHHHHHHHHHHHHhcCcccccC---CCCcCCC-CCCcchhHHHHHHHHHHHH
Confidence 23344566788999 8888888765443333222112211 3333445 6788999999999999999
Q ss_pred HHHHHHHH
Q 039286 172 TDLVTLTM 179 (191)
Q Consensus 172 ~~l~~ls~ 179 (191)
+.++....
T Consensus 136 ~l~~~s~~ 143 (144)
T PF01284_consen 136 LLFIVSAV 143 (144)
T ss_pred HHHHHHHH
Confidence 98887654
No 4
>PHA03048 IMV membrane protein; Provisional
Probab=22.37 E-value=3.4e+02 Score=20.33 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCccCchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 039286 117 LMLGVVASAIGAALAVAYIGLKGNSHAGWNKVANAGYDKFIKHTATAIALSIFAVTDLVTLTMHSTYT 184 (191)
Q Consensus 117 v~~yll~Sa~aAA~av~~l~~~G~~~~~W~~vC~~~~~~FC~~~~~Si~lsflA~~~l~~ls~lSa~~ 184 (191)
++.++++=+++--+|--...|..+....|...|.. +=.++.+.++-+.+.|.|+
T Consensus 15 li~GIiLL~~aCIfAfidfsK~k~~~~~wRalsii--------------~FIlgivl~lG~~ifsmy~ 68 (93)
T PHA03048 15 LIGGIILLAASCIFAFVDFSKNKATVTVWRALSGI--------------AFVLGIVMTIGMLIYSMWG 68 (93)
T ss_pred HHHHHHHHHHHHHHhhhhhhcCCCcchhHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Confidence 55666666666777888888888777788887765 3345556666667777766
No 5
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=18.85 E-value=1.9e+02 Score=19.43 Aligned_cols=38 Identities=13% Similarity=0.127 Sum_probs=28.7
Q ss_pred hhhHhhHHHHHHHHHHHHH-HHHHHHHHHHhHhhhcccC
Q 039286 153 YDKFIKHTATAIALSIFAV-TDLVTLTMHSTYTLYKGVH 190 (191)
Q Consensus 153 ~~~FC~~~~~Si~lsflA~-~~l~~ls~lSa~~L~r~~~ 190 (191)
..+.-|.+.=..+.+++++ +....+...++|..++.+|
T Consensus 6 ~~r~~D~~HR~tV~~Lig~T~~~g~~~~~~~y~~~~~~r 44 (59)
T PF14880_consen 6 GRRLADIAHRTTVLGLIGFTVYGGGLTVYTVYSYFKYNR 44 (59)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777788888887 7777888888888877554
No 6
>PHA02898 virion envelope protein; Provisional
Probab=18.72 E-value=3.7e+02 Score=20.09 Aligned_cols=55 Identities=9% Similarity=0.211 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCC-ccCchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 039286 117 LMLGVVASAIGAALAVAYIGLKGNS-HAGWNKVANAGYDKFIKHTATAIALSIFAVTDLVTLTMHSTYTL 185 (191)
Q Consensus 117 v~~yll~Sa~aAA~av~~l~~~G~~-~~~W~~vC~~~~~~FC~~~~~Si~lsflA~~~l~~ls~lSa~~L 185 (191)
++.++++=+++-=+|--...|.++. ...|...|.. +=.++.+.++-+.+.|.|+-
T Consensus 15 li~GIiLL~~ACIfAfidfSK~~~~~~~~wRalSii--------------~FIlgivl~lG~~ifs~y~r 70 (92)
T PHA02898 15 VAFGIILLIVACICAYIELSKSEKPADSALRSISII--------------SFILAIILILGIIFFKGYNM 70 (92)
T ss_pred HHHHHHHHHHHHHHheehhhcCCCcchhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhh
Confidence 4555555566667777788888865 6678877755 44456666666777777763
No 7
>smart00574 POX domain associated with HOX domains.
Probab=16.07 E-value=1.1e+02 Score=24.62 Aligned_cols=45 Identities=13% Similarity=0.325 Sum_probs=29.4
Q ss_pred hhhhhhhhhhHhhHHHHHHH-----HHHHHHHHHHHHHHHHhHhhhcccCC
Q 039286 146 NKVANAGYDKFIKHTATAIA-----LSIFAVTDLVTLTMHSTYTLYKGVHD 191 (191)
Q Consensus 146 ~~vC~~~~~~FC~~~~~Si~-----lsflA~~~l~~ls~lSa~~L~r~~~~ 191 (191)
.+||.. |..||+|...-+. .++-+...+..+.+=...+.||..||
T Consensus 87 ~eVd~R-Y~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~SrhFr~Lrd 136 (140)
T smart00574 87 EEVDRR-YKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTISRHFRCLKD 136 (140)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 568999 9999999876431 23334455566666666666765543
No 8
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=15.55 E-value=1e+02 Score=24.46 Aligned_cols=45 Identities=11% Similarity=0.314 Sum_probs=31.0
Q ss_pred hhhhhhhhhhHhhHHHHHH-----HHHHHHHHHHHHHHHHHhHhhhcccCC
Q 039286 146 NKVANAGYDKFIKHTATAI-----ALSIFAVTDLVTLTMHSTYTLYKGVHD 191 (191)
Q Consensus 146 ~~vC~~~~~~FC~~~~~Si-----~lsflA~~~l~~ls~lSa~~L~r~~~~ 191 (191)
.+||.. |..||+|...-+ +.++-+...+..+.+=...+.||..||
T Consensus 87 ~eVd~R-Y~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqamSrhFR~LRd 136 (140)
T PF07526_consen 87 DEVDRR-YRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAMSRHFRCLRD 136 (140)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHHHH
Confidence 569999 999999987633 223344556666777777777776554
No 9
>COG3647 Predicted membrane protein [Function unknown]
Probab=15.38 E-value=5.5e+02 Score=21.60 Aligned_cols=35 Identities=23% Similarity=0.504 Sum_probs=24.0
Q ss_pred HHHHHHHHhhCCCccCchhhhhhhhhhHhhHHHHHHHHHHHH
Q 039286 129 ALAVAYIGLKGNSHAGWNKVANAGYDKFIKHTATAIALSIFA 170 (191)
Q Consensus 129 A~av~~l~~~G~~~~~W~~vC~~~~~~FC~~~~~Si~lsflA 170 (191)
--+++.+|-.|+ ||+. + -|-||+..++=-++.+++
T Consensus 162 eegiaFLGsQGD---qWDa---Q-kDmlcdtlGAltal~lla 196 (205)
T COG3647 162 EEGIAFLGSQGD---QWDA---Q-KDMLCDTLGALTALILLA 196 (205)
T ss_pred chhHHHhhcccc---hhhh---H-HhHHHHHHHHHHHHHHHH
Confidence 345778877776 6885 3 477999887766666554
No 10
>PF05702 Herpes_UL49_5: Herpesvirus UL49.5 envelope/tegument protein; InterPro: IPR008647 UL49.5 protein consists of 98 amino acids with a calculated molecular mass of 10,155 Da. It contains putative signal peptide and transmembrane domains but lacks a consensus sequence for N glycosylation. UL49.5 protein is an O-glycosylated structural component of the viral envelope [].
Probab=14.33 E-value=2.7e+02 Score=21.12 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=26.3
Q ss_pred hhCCCccCchhhhhhhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHhHh
Q 039286 137 LKGNSHAGWNKVANAGYDKFIKHTATAIALSIFAVTDLVTLTMHSTYT 184 (191)
Q Consensus 137 ~~G~~~~~W~~vC~~~~~~FC~~~~~Si~lsflA~~~l~~ls~lSa~~ 184 (191)
+.++.+--|..-|+. -|=.-++-.++.++=+++.+...+..+.-+|+
T Consensus 37 ~~e~~~~FW~a~CSA-rGv~i~~~s~asV~FY~sL~aV~vall~~aY~ 83 (98)
T PF05702_consen 37 REESRRDFWSAACSA-RGVPIDFPSAASVLFYVSLLAVCVALLAYAYR 83 (98)
T ss_pred HhHHHhccccccccc-CceecCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334344469999988 66555555555555555544444444444444
Done!