Query 039286
Match_columns 191
No_of_seqs 104 out of 330
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:42:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039286.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039286hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 11.8 1.2E+02 0.0043 20.7 2.2 26 162-187 11-36 (79)
2 1emz_A Envelope glycoprotein E 6.8 1.2E+02 0.004 16.8 0.2 16 131-150 9-24 (26)
3 2l2t_A Receptor tyrosine-prote 6.7 4.9E+02 0.017 15.8 4.0 26 162-187 10-35 (44)
4 2k9j_B Integrin beta-3; transm 5.9 3.5E+02 0.012 16.2 2.2 28 162-189 10-37 (43)
5 3ns4_A Vacuolar protein sortin 5.5 5.4E+02 0.018 21.7 3.8 22 153-174 24-45 (271)
6 2yfv_C SCM3, KLLA0F05115P; cel 5.2 1.4E+02 0.0048 19.9 -0.0 16 144-160 37-52 (63)
7 1iij_A ERBB-2 receptor protein 5.2 3.8E+02 0.013 15.7 1.9 19 163-182 9-27 (35)
8 3m03_A ORC6, origin recognitio 5.1 1.8E+02 0.0062 20.7 0.5 21 138-159 73-93 (95)
9 2ks1_B Epidermal growth factor 4.9 4.1E+02 0.014 16.1 2.0 7 164-170 13-19 (44)
10 2jpw_A Troponin I, cardiac mus 4.5 2E+02 0.0069 16.4 0.3 13 9-21 9-21 (32)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=11.80 E-value=1.2e+02 Score=20.66 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhc
Q 039286 162 TAIALSIFAVTDLVTLTMHSTYTLYK 187 (191)
Q Consensus 162 ~Si~lsflA~~~l~~ls~lSa~~L~r 187 (191)
.+++++.++.++++.+.++=.+++..
T Consensus 11 ~~Iv~gvi~gilliGllllliwk~~~ 36 (79)
T 2knc_B 11 LVVLLSVMGAILLIGLAALLIWKLLI 36 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666544
No 2
>1emz_A Envelope glycoprotein E1; peptide, transmembrane domain, envelope protein E1, hepatitis C virus, viral protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=6.79 E-value=1.2e+02 Score=16.82 Aligned_cols=16 Identities=38% Similarity=0.898 Sum_probs=9.8
Q ss_pred HHHHHHhhCCCccCchhhhh
Q 039286 131 AVAYIGLKGNSHAGWNKVAN 150 (191)
Q Consensus 131 av~~l~~~G~~~~~W~~vC~ 150 (191)
+++|.+..|| |-|++-
T Consensus 9 glayfsm~gn----WaKVl~ 24 (26)
T 1emz_A 9 GIAYFSMVGN----WAKXXX 24 (26)
T ss_dssp HHHHHHHHHH----HHC---
T ss_pred HHHHHHHhhH----Hhhhcc
Confidence 5777777775 888763
No 3
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=6.69 E-value=4.9e+02 Score=15.83 Aligned_cols=26 Identities=8% Similarity=0.011 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhc
Q 039286 162 TAIALSIFAVTDLVTLTMHSTYTLYK 187 (191)
Q Consensus 162 ~Si~lsflA~~~l~~ls~lSa~~L~r 187 (191)
.+|+..-++-++.+++..+..+-+.|
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~R 35 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVR 35 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhh
Confidence 45666666644444444444443433
No 4
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=5.86 E-value=3.5e+02 Score=16.20 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhhhccc
Q 039286 162 TAIALSIFAVTDLVTLTMHSTYTLYKGV 189 (191)
Q Consensus 162 ~Si~lsflA~~~l~~ls~lSa~~L~r~~ 189 (191)
.+++.+.++.+.+..+..+=.+++.-..
T Consensus 10 ~~Iv~gvi~~ivliGl~lLliwk~~~~i 37 (43)
T 2k9j_B 10 LVVLLSVMGAILLIGLAALLIWKLLITI 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence 4566667777666666666666665443
No 5
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=5.48 E-value=5.4e+02 Score=21.69 Aligned_cols=22 Identities=9% Similarity=0.033 Sum_probs=19.7
Q ss_pred hhhHhhHHHHHHHHHHHHHHHH
Q 039286 153 YDKFIKHTATAIALSIFAVTDL 174 (191)
Q Consensus 153 ~~~FC~~~~~Si~lsflA~~~l 174 (191)
+..||++...+++-.|+..+..
T Consensus 24 ~rnFcDK~ve~~~~~Fi~~Ii~ 45 (271)
T 3ns4_A 24 KWNFLDKVIDIMTTNFVSNTIR 45 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999854
No 6
>2yfv_C SCM3, KLLA0F05115P; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140}
Probab=5.25 E-value=1.4e+02 Score=19.86 Aligned_cols=16 Identities=13% Similarity=0.513 Sum_probs=13.1
Q ss_pred CchhhhhhhhhhHhhHH
Q 039286 144 GWNKVANAGYDKFIKHT 160 (191)
Q Consensus 144 ~W~~vC~~~~~~FC~~~ 160 (191)
.|..+|.. |++|=+|.
T Consensus 37 ~w~~Ii~K-Y~~~edqg 52 (63)
T 2yfv_C 37 VWSQIIQK-YESIDNQG 52 (63)
T ss_dssp HHHHHHHH-HHSGGGSS
T ss_pred HHHHHHHH-HhcccCCC
Confidence 59999999 99986653
No 7
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=5.24 E-value=3.8e+02 Score=15.65 Aligned_cols=19 Identities=11% Similarity=0.069 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 039286 163 AIALSIFAVTDLVTLTMHST 182 (191)
Q Consensus 163 Si~lsflA~~~l~~ls~lSa 182 (191)
+++.+.++ ++++++..++.
T Consensus 9 sIaagVvg-lll~vii~l~~ 27 (35)
T 1iij_A 9 FIIATVVG-VLLFLILVVVV 27 (35)
T ss_dssp HHHHHHHH-HHHHHHHTTTT
T ss_pred EeHHHHHH-HHHHHHHHHHh
Confidence 56666666 33333333333
No 8
>3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens}
Probab=5.09 E-value=1.8e+02 Score=20.70 Aligned_cols=21 Identities=14% Similarity=0.313 Sum_probs=16.5
Q ss_pred hCCCccCchhhhhhhhhhHhhH
Q 039286 138 KGNSHAGWNKVANAGYDKFIKH 159 (191)
Q Consensus 138 ~G~~~~~W~~vC~~~~~~FC~~ 159 (191)
-|-+..+|..+|.+ +.+|=.+
T Consensus 73 s~lk~~~f~~l~~~-~e~~~~~ 93 (95)
T 3m03_A 73 SGVKKAIFDRLCKQ-LEKIGQQ 93 (95)
T ss_dssp TCBCHHHHHHHHHH-HHHHHTT
T ss_pred HCCCHHHHHHHHHH-HHHHHHh
Confidence 36677789999999 8888654
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=4.90 E-value=4.1e+02 Score=16.12 Aligned_cols=7 Identities=29% Similarity=0.411 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 039286 164 IALSIFA 170 (191)
Q Consensus 164 i~lsflA 170 (191)
|+..-++
T Consensus 13 IA~gVVg 19 (44)
T 2ks1_B 13 IATGMVG 19 (44)
T ss_dssp STHHHHH
T ss_pred EEeehhH
Confidence 4444444
No 10
>2jpw_A Troponin I, cardiac muscle; poly (L-proline) II helix, contractIle protein; HET: SEP; NMR {Synthetic}
Probab=4.55 E-value=2e+02 Score=16.43 Aligned_cols=13 Identities=23% Similarity=0.327 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCcc
Q 039286 9 SELKNVTPRPSRV 21 (191)
Q Consensus 9 ~~~~~~~~~~~~~ 21 (191)
+|...+.|+|-+|
T Consensus 9 ~~~~~PaP~p~RR 21 (32)
T 2jpw_A 9 AGEPQPAPAPVRR 21 (32)
T ss_dssp HSCCCCCCCCCCC
T ss_pred CCCCCCCCccccc
Confidence 3344444444333
Done!