Query 039286
Match_columns 191
No_of_seqs 104 out of 330
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 13:43:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039286.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039286hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rrza_ a.7.10.1 (A:) Glycogen 10.7 36 0.0026 21.1 0.7 20 141-163 40-59 (66)
2 d1ppje2 f.23.12.1 (E:1-69) Iro 5.5 2.4E+02 0.018 17.3 3.0 16 117-132 34-49 (69)
3 d1wpga4 f.33.1.1 (A:1-124,A:24 4.6 3.3E+02 0.024 21.6 4.2 38 4-41 287-324 (472)
4 d3cx5e2 f.23.12.1 (E:31-86) Ir 3.9 4E+02 0.029 15.6 3.0 17 117-133 24-40 (56)
5 d1oede_ f.36.1.1 (E:) Acetylch 3.8 4.3E+02 0.032 18.6 3.9 15 143-158 220-234 (260)
6 d2hh8a1 d.358.1.1 (A:7-133) Hy 3.1 1.9E+02 0.014 19.8 1.0 11 153-163 87-97 (127)
7 d1ezfa_ a.128.1.2 (A:) Squalen 3.1 2.7E+02 0.02 21.4 2.2 19 153-171 131-149 (333)
8 d2np5a1 a.4.1.9 (A:9-77) Trans 2.9 3.3E+02 0.024 15.2 2.0 22 130-151 9-30 (69)
9 d1f16a_ f.1.4.1 (A:) Proapopto 2.8 4.7E+02 0.034 18.5 3.1 16 134-154 151-166 (192)
10 d1pw4a_ f.38.1.1 (A:) Glycerol 2.7 7.5E+02 0.055 17.5 4.4 19 6-24 2-20 (447)
No 1
>d1rrza_ a.7.10.1 (A:) Glycogen synthesis protein GlgS {Escherichia coli [TaxId: 562]}
Probab=10.73 E-value=36 Score=21.11 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=14.5
Q ss_pred CccCchhhhhhhhhhHhhHHHHH
Q 039286 141 SHAGWNKVANAGYDKFIKHTATA 163 (191)
Q Consensus 141 ~~~~W~~vC~~~~~~FC~~~~~S 163 (191)
.|-.| +|.. |.-||.|+.-+
T Consensus 40 e~r~W--Fc~R-y~~Yc~q~~qa 59 (66)
T d1rrza_ 40 EHRTW--FCAR-YAWYCQQMMQA 59 (66)
T ss_dssp HHHHH--HHHH-HHHHHHHHHHH
T ss_pred HHHHH--HHHH-HHHHHHHHHHH
Confidence 33346 4999 99999998643
No 2
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.50 E-value=2.4e+02 Score=17.26 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 039286 117 LMLGVVASAIGAALAV 132 (191)
Q Consensus 117 v~~yll~Sa~aAA~av 132 (191)
.+.|++..+++++.+.
T Consensus 34 ~fsYl~~g~~~v~~ay 49 (69)
T d1ppje2 34 GFSYLVTATTTVGVAY 49 (69)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred eehhhhhhhHHHHHHH
Confidence 8899888877655443
No 3
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=4.62 E-value=3.3e+02 Score=21.59 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=18.2
Q ss_pred CCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHH
Q 039286 4 LDNPASELKNVTPRPSRVIYFRIDIALRILLFVFSFVA 41 (191)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~l~LR~la~~~sl~A 41 (191)
.|.||++--...||+++.....-.+..|+...+.....
T Consensus 287 ~ep~d~~iM~~~Pr~~~~~li~~~~~~~i~~~g~~~~~ 324 (472)
T d1wpga4 287 FNPPDLDIMDRPPRSPKEPLISGWLFFRYMAIGGYVGA 324 (472)
T ss_dssp TCCCCSGGGGSCCCCTTCCSSCTHHHHHHHHHHHHHHH
T ss_pred cCCCchhhhcCCCCCCCccccCHHHHHHHHHHHHHHHH
Confidence 47777774344455443222223445555554444433
No 4
>d3cx5e2 f.23.12.1 (E:31-86) Iron-sulfur subunit (ISP) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane region {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.87 E-value=4e+02 Score=15.59 Aligned_cols=17 Identities=12% Similarity=0.069 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039286 117 LMLGVVASAIGAALAVA 133 (191)
Q Consensus 117 v~~yll~Sa~aAA~av~ 133 (191)
.+.|++..+.+...+.+
T Consensus 24 ~fsY~mvGs~g~~~a~~ 40 (56)
T d3cx5e2 24 SYAYFMVGAMGLLSSAG 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eEEEEeeehhHHHHHHH
Confidence 78888887776655443
No 5
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=3.76 E-value=4.3e+02 Score=18.55 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=7.9
Q ss_pred cCchhhhhhhhhhHhh
Q 039286 143 AGWNKVANAGYDKFIK 158 (191)
Q Consensus 143 ~~W~~vC~~~~~~FC~ 158 (191)
-.|..+... .||+|-
T Consensus 220 ~eW~~vA~v-iDR~~l 234 (260)
T d1oede_ 220 ENWVLIGKV-IDKACF 234 (260)
T ss_dssp ------CCH-HHHHHH
T ss_pred HHHHHHHHH-HHHHHH
Confidence 359999999 999885
No 6
>d2hh8a1 d.358.1.1 (A:7-133) Hypothetical protein YdfO {Escherichia coli [TaxId: 562]}
Probab=3.14 E-value=1.9e+02 Score=19.81 Aligned_cols=11 Identities=18% Similarity=0.528 Sum_probs=9.0
Q ss_pred hhhHhhHHHHH
Q 039286 153 YDKFIKHTATA 163 (191)
Q Consensus 153 ~~~FC~~~~~S 163 (191)
|..||++++.|
T Consensus 87 f~~Fc~~~a~A 97 (127)
T d2hh8a1 87 FQEYRRNLAKA 97 (127)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 88999988765
No 7
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.11 E-value=2.7e+02 Score=21.35 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=15.5
Q ss_pred hhhHhhHHHHHHHHHHHHH
Q 039286 153 YDKFIKHTATAIALSIFAV 171 (191)
Q Consensus 153 ~~~FC~~~~~Si~lsflA~ 171 (191)
++.||.+++++++..+.-.
T Consensus 131 L~~Ycy~VAG~VG~~l~~l 149 (333)
T d1ezfa_ 131 WDKYCHYVAGLVGIGLSRL 149 (333)
T ss_dssp HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999988765543
No 8
>d2np5a1 a.4.1.9 (A:9-77) Transcriptional regulator RHA1_ro04179 {Rhodococcus sp. [TaxId: 1831]}
Probab=2.89 E-value=3.3e+02 Score=15.17 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=17.4
Q ss_pred HHHHHHHhhCCCccCchhhhhh
Q 039286 130 LAVAYIGLKGNSHAGWNKVANA 151 (191)
Q Consensus 130 ~av~~l~~~G~~~~~W~~vC~~ 151 (191)
++.-.+.++|-..+...++|..
T Consensus 9 aa~~l~~~~G~~~~ti~~Ia~~ 30 (69)
T d2np5a1 9 ALFDVAAESGLEGASVREVAKR 30 (69)
T ss_dssp HHHHHHHHHCGGGCCHHHHHHH
T ss_pred HHHHHHHHhCccccCHHHHHHH
Confidence 4566778999999998888864
No 9
>d1f16a_ f.1.4.1 (A:) Proapoptotic molecule Bax {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.79 E-value=4.7e+02 Score=18.46 Aligned_cols=16 Identities=25% Similarity=0.783 Sum_probs=9.4
Q ss_pred HHHhhCCCccCchhhhhhhhh
Q 039286 134 YIGLKGNSHAGWNKVANAGYD 154 (191)
Q Consensus 134 ~l~~~G~~~~~W~~vC~~~~~ 154 (191)
.+.++| +|..+|+. |+
T Consensus 151 WI~~~G----GW~g~~~~-f~ 166 (192)
T d1f16a_ 151 WIQDQG----GWDGLLSY-FG 166 (192)
T ss_dssp HHHHTC----STHHHHHH-CC
T ss_pred HHHHCC----CHHHHHHH-cC
Confidence 444455 57777766 54
No 10
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=2.67 E-value=7.5e+02 Score=17.47 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCCCCcchhh
Q 039286 6 NPASELKNVTPRPSRVIYF 24 (191)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~ 24 (191)
+|+|+..+....+.++..+
T Consensus 2 ~pap~~~~~p~~~~~~~~~ 20 (447)
T d1pw4a_ 2 KPAPHKARLPAAEIDPTYR 20 (447)
T ss_dssp CCCCCCCCCCCSCCHHHHH
T ss_pred CCCCCCCCCChhhhccchh
Confidence 4666644333333333333
Done!