BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039288
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HFJ|A Chain A, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFJ|B Chain B, X-ray Crystal Structure Of A Double Bond Reductase From
Nicotiana Tabacum
pdb|4HFM|A Chain A, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFM|B Chain B, X-ray Crystal Structure Of A Nadp(h)-bound Double Bond
Reductase From Nicotiana Tabacum
pdb|4HFN|A Chain A, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
pdb|4HFN|B Chain B, X-ray Crystal Structure Of A Ternary Complex Of Double
Bond Reductase From Nicotiana Tabacum
Length = 351
Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/172 (37%), Positives = 84/172 (48%), Gaps = 53/172 (30%)
Query: 1 MPGLTAYANLFENFSPKMGEEYVFISAAFSSV---------------------------- 32
MPG+TAYA E SPK GE VF+SAA +V
Sbjct: 136 MPGMTAYAGFHEVCSPKKGET-VFVSAASGAVGQLVGQFAKMLGCYVVGSAGSKEKVDLL 194
Query: 33 -YRSGFDDAFNYKEELDLNATLKRSVRFFPTCHQT--------------------AALRF 71
+ GFD+AFNYKEE DL+A LKR +FP +
Sbjct: 195 KSKFGFDEAFNYKEEQDLSAALKR---YFPDGIDIYFENVGGKMLDAVLVNMKLYGRIAV 251
Query: 72 CEMTSQYNLDLPENVHNLMFVVFGRSRMQGFIVFDYSSVYPEFLEMILPYIR 123
C M SQYNL+ E VHNL ++ R RM+GF+VFDY +YP++LEM++P I+
Sbjct: 252 CGMISQYNLEQTEGVHNLFCLITKRIRMEGFLVFDYYHLYPKYLEMVIPQIK 303
>pdb|2J3H|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3H|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Apo Form
pdb|2J3I|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3I|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Binary Complex
pdb|2J3J|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3J|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex I
pdb|2J3K|A Chain A, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
pdb|2J3K|B Chain B, Crystal Structure Of Arabidopsis Thaliana Double Bond
Reductase (At5g16970)-Ternary Complex Ii
Length = 345
Score = 102 bits (253), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/173 (37%), Positives = 84/173 (48%), Gaps = 53/173 (30%)
Query: 1 MPGLTAYANLFENFSPKMGEEYVFISAAFSSV---------------------------- 32
MPG+TAYA +E SPK GE V++SAA +V
Sbjct: 138 MPGMTAYAGFYEVCSPKEGET-VYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLL 196
Query: 33 -YRSGFDDAFNYKEELDLNATLKRSVRFFPTC--------------------HQTAALRF 71
+ GFDDAFNYKEE DL A LKR FP + +
Sbjct: 197 KTKFGFDDAFNYKEESDLTAALKRC---FPNGIDIYFENVGGKMLDAVLVNMNMHGRIAV 253
Query: 72 CEMTSQYNLDLPENVHNLMFVVFGRSRMQGFIVFDYSSVYPEFLEMILPYIRE 124
C M SQYNL+ E VHNL +++ R+R+QGF+V D+ Y +FLE +LP+IRE
Sbjct: 254 CGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYDKYSKFLEFVLPHIRE 306
>pdb|4B7C|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7C|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|A Chain A, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|B Chain B, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|C Chain C, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|D Chain D, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|E Chain E, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|F Chain F, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|G Chain G, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|H Chain H, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|I Chain I, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|J Chain J, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|K Chain K, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa.
pdb|4B7X|L Chain L, Crystal Structure Of Hypothetical Protein Pa1648 From
Pseudomonas Aeruginosa
Length = 336
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 69/178 (38%), Gaps = 48/178 (26%)
Query: 1 MPGLTAYANLFENFSPKMGEEYVFISAAFSS----------------------------V 32
M G+TAY L + PK GE V AA + V
Sbjct: 132 MTGMTAYFALLDVGQPKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLV 191
Query: 33 YRSGFDDAFNYKEELDLNATLKRSVR-----FFPTCHQ------------TAALRFCEMT 75
GFD A +YK E DL A LKR FF A + C
Sbjct: 192 EELGFDGAIDYKNE-DLAAGLKRECPKGIDVFFDNVGGEILDTVLTRIAFKARIVLCGAI 250
Query: 76 SQYN-LDLPENVHNLMFVVFGRSRMQGFIVFDYSSVYPEFLEMILPYIREKARLSMRK 132
SQYN + N + ++ R+RM+G +V DY+ +PE L+ + ++ E +L R+
Sbjct: 251 SQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEGLKEMATWLAE-GKLQSRE 307
>pdb|1V3T|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3T|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
pdb|1V3U|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3U|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase In
Apo Form
pdb|1V3V|A Chain A, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|1V3V|B Chain B, Crystal Structure Of Leukotriene B4 12-
Hydroxydehydrogenase15-Oxo-Prostaglandin 13-Reductase
Complexed With Nadp And 15-Oxo-Pge2
pdb|2DM6|A Chain A, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
pdb|2DM6|B Chain B, Crystal Structure Of Anti-Configuration Of Indomethacin
And Leukotriene B4 12-Hydroxydehydrogenase15-Oxo-
Prostaglandin 13-Reductase Complex
Length = 333
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 64/171 (37%), Gaps = 48/171 (28%)
Query: 1 MPGLTAYANLFENFSPKMGEEYVFISAAFSSV---------------------------- 32
MPGLTAY L E K G E V +SAA +V
Sbjct: 128 MPGLTAYFGLLEVCGVK-GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL 186
Query: 33 YRSGFDDAFNYKEELDLNATLKRSVRFFPTCH-----------------QTAALRFCEMT 75
+ GFD AFNYK L LK++ C+ + C
Sbjct: 187 KQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVGGEFLNTVLSQMKDFGKIAICGAI 246
Query: 76 SQYN-LDLPENVHNLMFVVFGRSRMQGFIVFDYSS-VYPEFLEMILPYIRE 124
S YN +D + +++ + R++GFIV+ + V + L ++ ++ E
Sbjct: 247 SVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRWQGDVREKALRDLMKWVLE 297
>pdb|2Y05|A Chain A, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|B Chain B, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|C Chain C, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
pdb|2Y05|D Chain D, Crystal Structure Of Human Leukotriene B4
12-Hydroxydehydrogenase In Complex With Nadp And
Raloxifene
Length = 328
Score = 33.1 bits (74), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 53/155 (34%), Gaps = 47/155 (30%)
Query: 1 MPGLTAYANLFENFSPKMGEEYVFISAAFSSV---------------------------- 32
MPGLTAY L E K G E V ++AA +V
Sbjct: 123 MPGLTAYFGLLEICGVK-GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYL 181
Query: 33 YRSGFDDAFNYKEELDLNATLKRSVRFFPTCH-----------------QTAALRFCEMT 75
+ GFD FNYK L TLK++ C+ + + C
Sbjct: 182 QKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAI 241
Query: 76 SQYNLDLPENVHNLM-FVVFGRSRMQGFIVFDYSS 109
S YN P V++ RM+ F+V+ +
Sbjct: 242 STYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQG 276
>pdb|1ZSV|A Chain A, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|B Chain B, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|C Chain C, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
pdb|1ZSV|D Chain D, Crystal Structure Of Human Nadp-Dependent Leukotriene B4
12- Hydroxydehydrogenase
Length = 349
Score = 33.1 bits (74), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 61/171 (35%), Gaps = 48/171 (28%)
Query: 1 MPGLTAYANLFENFSPKMGEEYVFISAAFSSV---------------------------- 32
MPGLTAY L E K G E V ++AA +V
Sbjct: 144 MPGLTAYFGLLEICGVK-GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAVGSDEKVAYL 202
Query: 33 YRSGFDDAFNYKEELDLNATLKRSVRFFPTCH-----------------QTAALRFCEMT 75
+ GFD FNYK L TLK++ C+ + + C
Sbjct: 203 QKLGFDVVFNYKTVESLEETLKKASPDGYDCYFDNVGGEFSNTVIGQMKKFGRIAICGAI 262
Query: 76 SQYNLDLPENVHNLM-FVVFGRSRMQGFIVFDYSS-VYPEFLEMILPYIRE 124
S YN P V++ RM+ F+V+ + + L+ +L ++ E
Sbjct: 263 STYNRTGPLPPGPPPEIVIYQELRMEAFVVYRWQGDARQKALKDLLKWVLE 313
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 28.9 bits (63), Expect = 0.96, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 9/42 (21%)
Query: 70 RFCEMTSQYNLDLPENVHNLMFVVFGRSRM-----QGFIVFD 106
R M YNL N HN+M+ V GR R+ QG VFD
Sbjct: 332 RNAMMAPHYNL----NAHNIMYCVRGRGRIQIVNDQGQSVFD 369
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 16 PKMGEEYVFISAAFSSVYRSGFDDAFNYKEELDLNATLKRSVRFFP 61
PK E ++ +S A + DAFN LD N LK++ F P
Sbjct: 364 PKDTEVFLILSTALHDPHYFEKPDAFNPDHFLDANGALKKTEAFIP 409
>pdb|2WPN|B Chain B, Structure Of The Oxidised, As-Isolated Nifese Hydrogenase
From D. Vulgaris Hildenborough
Length = 482
Score = 28.1 bits (61), Expect = 1.7, Method: Composition-based stats.
Identities = 19/92 (20%), Positives = 39/92 (42%), Gaps = 2/92 (2%)
Query: 25 ISAAFSSVYRSGFDDAFNYKEELDLNATLKRSVRFFPTCHQTAALRFCEMTSQYNLDLPE 84
+ A S GF+ ++ D + ++R PT H TA++ + + +P
Sbjct: 29 VDARLSGGMYRGFETILRGRDPRDASQIVQRIXGVCPTAHSTASV--LALDEAFGAKVPN 86
Query: 85 NVHNLMFVVFGRSRMQGFIVFDYSSVYPEFLE 116
N ++FG + +Q I+ Y +F++
Sbjct: 87 NGRITRNLIFGANYLQSHILHFYHLSAQDFVQ 118
>pdb|1WKQ|A Chain A, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
pdb|1WKQ|B Chain B, Crystal Structure Of Bacillus Subtilis Guanine Deaminase.
The First Domain-Swapped Structure In The Cytidine
Deaminase Superfamily
Length = 164
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 23 VFISAAFSSVYRSGFDDAFNYKEELDLNATLKRSVRFF 60
VF +A + +GFDD+F YK E+D A +R++ F+
Sbjct: 106 VFYAAEHTDAAEAGFDDSFIYK-EIDKPAE-ERTIPFY 141
>pdb|1TIY|A Chain A, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium Target
Sr160
pdb|1TIY|B Chain B, X-Ray Structure Of Guanine Deaminase From Bacillus
Subtilis Northeast Structural Genomics Consortium Target
Sr160
Length = 164
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 23 VFISAAFSSVYRSGFDDAFNYKEELDLNATLKRSVRFF 60
VF +A + +GFDD+F YK E+D A +R++ F+
Sbjct: 98 VFYAAEHTDAAEAGFDDSFIYK-EIDKPAE-ERTIPFY 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,767,534
Number of Sequences: 62578
Number of extensions: 133828
Number of successful extensions: 341
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 20
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 46 (22.3 bits)