Query 039292
Match_columns 520
No_of_seqs 416 out of 2765
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 08:17:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039292.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039292hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0389 SNF2 family DNA-depend 100.0 1.1E-75 2.4E-80 608.9 28.9 329 167-520 399-739 (941)
2 KOG0385 Chromatin remodeling c 100.0 2.6E-68 5.7E-73 552.0 28.3 332 160-518 159-514 (971)
3 KOG0391 SNF2 family DNA-depend 100.0 1E-64 2.2E-69 538.9 20.9 292 159-478 607-908 (1958)
4 KOG0387 Transcription-coupled 100.0 5.5E-62 1.2E-66 507.6 23.1 295 158-478 196-512 (923)
5 KOG0384 Chromodomain-helicase 100.0 6.3E-62 1.4E-66 525.8 20.9 319 166-512 369-697 (1373)
6 KOG0388 SNF2 family DNA-depend 100.0 1.7E-58 3.6E-63 473.5 24.5 290 158-480 558-859 (1185)
7 PLN03142 Probable chromatin-re 100.0 7.7E-57 1.7E-61 502.3 31.2 290 160-478 162-454 (1033)
8 KOG0386 Chromatin remodeling c 100.0 3.3E-57 7.2E-62 481.0 15.9 288 165-478 392-692 (1157)
9 KOG0392 SNF2 family DNA-depend 100.0 1.8E-55 3.9E-60 473.6 22.2 326 160-509 968-1321(1549)
10 KOG1015 Transcription regulato 100.0 2.1E-53 4.5E-58 446.3 22.4 306 155-478 656-1000(1567)
11 PF00176 SNF2_N: SNF2 family N 100.0 4.6E-48 1E-52 388.4 23.3 284 171-475 1-299 (299)
12 KOG1002 Nucleotide excision re 100.0 2.4E-47 5.2E-52 379.1 23.8 298 157-477 174-523 (791)
13 KOG0390 DNA repair protein, SN 100.0 6.2E-47 1.4E-51 405.2 27.1 290 158-476 229-544 (776)
14 KOG4439 RNA polymerase II tran 100.0 6.8E-47 1.5E-51 389.5 20.8 311 160-482 318-674 (901)
15 KOG1016 Predicted DNA helicase 100.0 2.4E-44 5.1E-49 371.9 19.7 300 158-480 245-612 (1387)
16 KOG0383 Predicted helicase [Ge 100.0 7.8E-42 1.7E-46 363.2 7.4 288 166-478 294-596 (696)
17 COG0553 HepA Superfamily II DN 100.0 8.5E-39 1.9E-43 366.2 22.0 306 162-478 333-661 (866)
18 KOG1000 Chromatin remodeling p 100.0 9.8E-36 2.1E-40 296.8 19.1 242 160-428 191-444 (689)
19 KOG1001 Helicase-like transcri 100.0 1.6E-33 3.5E-38 303.9 18.6 279 170-478 135-430 (674)
20 PRK04914 ATP-dependent helicas 100.0 1.6E-31 3.5E-36 298.4 23.5 244 164-422 149-446 (956)
21 KOG0298 DEAD box-containing he 99.9 1.4E-27 3E-32 261.0 11.5 281 190-480 377-696 (1394)
22 TIGR00603 rad25 DNA repair hel 99.9 2.6E-23 5.6E-28 225.7 21.7 204 165-424 253-464 (732)
23 COG1061 SSL2 DNA or RNA helica 99.8 6.9E-18 1.5E-22 178.0 19.2 210 162-432 31-245 (442)
24 PF04851 ResIII: Type III rest 99.7 8.4E-18 1.8E-22 156.0 12.4 166 167-343 3-184 (184)
25 KOG1123 RNA polymerase II tran 99.7 9.7E-18 2.1E-22 168.7 8.2 157 165-345 300-462 (776)
26 PRK13766 Hef nuclease; Provisi 99.7 8.3E-16 1.8E-20 174.2 23.3 169 167-357 15-187 (773)
27 smart00487 DEXDc DEAD-like hel 99.7 3.5E-15 7.5E-20 139.2 16.4 163 165-344 6-173 (201)
28 PHA02558 uvsW UvsW helicase; P 99.7 1.8E-15 3.9E-20 162.5 16.5 146 166-344 113-262 (501)
29 COG1111 MPH1 ERCC4-like helica 99.6 3.6E-14 7.7E-19 144.5 21.6 168 167-356 15-186 (542)
30 PRK11448 hsdR type I restricti 99.6 8.9E-15 1.9E-19 168.0 17.2 167 166-345 412-598 (1123)
31 cd00046 DEXDc DEAD-like helica 99.6 1.4E-14 3.1E-19 127.2 11.6 140 189-341 2-144 (144)
32 TIGR00348 hsdR type I site-spe 99.5 1.4E-13 3E-18 152.3 16.3 164 164-344 235-405 (667)
33 COG4096 HsdR Type I site-speci 99.5 5.1E-14 1.1E-18 150.9 9.9 181 161-361 159-351 (875)
34 cd00268 DEADc DEAD-box helicas 99.5 7.4E-13 1.6E-17 125.4 15.2 159 167-342 21-185 (203)
35 PF00270 DEAD: DEAD/DEAH box h 99.5 1.4E-12 3E-17 119.4 14.3 161 170-348 2-168 (169)
36 TIGR00643 recG ATP-dependent D 99.4 9.5E-12 2.1E-16 137.3 17.3 163 165-346 233-401 (630)
37 KOG0354 DEAD-box like helicase 99.4 6.5E-12 1.4E-16 135.1 14.9 174 166-359 61-238 (746)
38 PRK10917 ATP-dependent DNA hel 99.3 1.9E-11 4.2E-16 135.9 15.8 161 164-345 258-423 (681)
39 PRK11776 ATP-dependent RNA hel 99.3 2.4E-11 5.1E-16 129.8 15.1 158 166-342 25-189 (460)
40 PRK11192 ATP-dependent RNA hel 99.3 3.2E-11 6.9E-16 127.8 15.8 167 167-350 23-197 (434)
41 TIGR00614 recQ_fam ATP-depende 99.3 3.9E-11 8.4E-16 128.3 16.0 173 166-358 10-189 (470)
42 PTZ00424 helicase 45; Provisio 99.3 3.2E-11 6.9E-16 126.5 13.2 158 167-342 50-212 (401)
43 TIGR00580 mfd transcription-re 99.2 1.2E-10 2.6E-15 132.0 16.9 160 166-346 450-614 (926)
44 TIGR01389 recQ ATP-dependent D 99.2 1.5E-10 3.2E-15 127.5 16.5 171 167-358 13-189 (591)
45 PRK02362 ski2-like helicase; P 99.2 1.4E-10 3.1E-15 130.5 16.4 161 166-351 22-189 (737)
46 PRK11634 ATP-dependent RNA hel 99.2 1.4E-10 3.1E-15 127.3 15.6 158 166-342 27-191 (629)
47 PF13872 AAA_34: P-loop contai 99.2 3.3E-10 7.2E-15 110.7 16.3 242 165-425 35-302 (303)
48 PRK11057 ATP-dependent DNA hel 99.2 2.5E-10 5.4E-15 125.6 17.3 170 167-358 25-201 (607)
49 PRK10590 ATP-dependent RNA hel 99.2 1.2E-10 2.6E-15 124.1 14.0 159 166-342 22-191 (456)
50 PRK01172 ski2-like helicase; P 99.2 2.3E-10 4.9E-15 127.9 16.5 159 167-350 22-186 (674)
51 COG4889 Predicted helicase [Ge 99.2 2.3E-11 4.9E-16 130.1 7.9 172 160-342 154-351 (1518)
52 PRK10689 transcription-repair 99.2 1.9E-10 4.2E-15 133.1 16.1 161 165-346 598-763 (1147)
53 PTZ00110 helicase; Provisional 99.2 1.5E-10 3.2E-15 125.7 14.2 157 166-341 151-318 (545)
54 PRK00254 ski2-like helicase; P 99.2 2.6E-10 5.7E-15 128.1 16.3 161 166-351 22-187 (720)
55 PLN00206 DEAD-box ATP-dependen 99.2 1.6E-10 3.6E-15 124.8 13.9 157 166-342 142-311 (518)
56 PRK13767 ATP-dependent helicas 99.2 6.3E-10 1.4E-14 127.0 18.9 166 167-349 32-223 (876)
57 COG1205 Distinct helicase fami 99.1 9.7E-10 2.1E-14 123.8 17.6 160 167-341 70-242 (851)
58 PRK04837 ATP-dependent RNA hel 99.1 5.2E-10 1.1E-14 118.2 14.7 159 167-342 30-201 (423)
59 TIGR03817 DECH_helic helicase/ 99.1 1E-09 2.3E-14 122.8 17.4 165 166-349 35-210 (742)
60 COG1200 RecG RecG-like helicas 99.1 6.2E-10 1.3E-14 118.4 14.6 163 164-347 259-427 (677)
61 PRK01297 ATP-dependent RNA hel 99.1 4.8E-10 1E-14 120.2 13.5 161 166-342 108-281 (475)
62 KOG0342 ATP-dependent RNA heli 99.1 8.2E-10 1.8E-14 112.3 12.9 164 167-349 104-278 (543)
63 PRK04537 ATP-dependent RNA hel 99.1 1.1E-09 2.5E-14 119.3 15.0 161 166-342 30-203 (572)
64 COG1204 Superfamily II helicas 99.1 6E-10 1.3E-14 123.9 12.5 168 167-360 31-204 (766)
65 PRK05580 primosome assembly pr 99.1 4E-09 8.6E-14 117.2 18.0 157 165-343 142-306 (679)
66 TIGR03158 cas3_cyano CRISPR-as 99.0 3.4E-09 7.3E-14 109.3 15.3 162 171-343 1-193 (357)
67 KOG0350 DEAD-box ATP-dependent 99.0 2.5E-09 5.5E-14 108.8 12.7 144 166-315 158-309 (620)
68 PRK09401 reverse gyrase; Revie 99.0 3.2E-09 7E-14 123.3 15.4 129 167-314 80-214 (1176)
69 COG1201 Lhr Lhr-like helicases 99.0 2.7E-09 5.9E-14 117.7 13.9 174 166-359 21-206 (814)
70 KOG0338 ATP-dependent RNA heli 99.0 7.3E-10 1.6E-14 112.9 8.6 167 167-352 203-378 (691)
71 TIGR01587 cas3_core CRISPR-ass 99.0 5.7E-09 1.2E-13 107.8 14.0 151 190-342 2-166 (358)
72 PLN03137 ATP-dependent DNA hel 99.0 7.8E-09 1.7E-13 116.7 15.0 177 166-358 459-643 (1195)
73 TIGR01054 rgy reverse gyrase. 98.9 1.8E-08 4E-13 117.3 16.3 129 167-315 78-213 (1171)
74 KOG0331 ATP-dependent RNA heli 98.9 5.1E-09 1.1E-13 109.6 9.9 157 167-341 113-281 (519)
75 KOG0343 RNA Helicase [RNA proc 98.9 5.1E-09 1.1E-13 107.7 8.2 172 167-359 91-272 (758)
76 TIGR00595 priA primosomal prot 98.8 4.7E-08 1E-12 104.9 14.2 133 191-343 1-141 (505)
77 KOG0330 ATP-dependent RNA heli 98.8 1.4E-08 3E-13 100.7 8.9 159 166-343 82-247 (476)
78 COG4098 comFA Superfamily II D 98.8 1.2E-07 2.6E-12 92.8 14.8 152 163-344 93-246 (441)
79 PF07652 Flavi_DEAD: Flaviviru 98.8 5.9E-08 1.3E-12 84.8 10.7 129 191-343 8-138 (148)
80 COG0610 Type I site-specific r 98.8 4.9E-08 1.1E-12 111.8 12.6 146 188-348 274-420 (962)
81 PRK14701 reverse gyrase; Provi 98.7 1.8E-07 3.8E-12 111.6 17.0 129 167-314 79-213 (1638)
82 TIGR02621 cas3_GSU0051 CRISPR- 98.7 6.3E-08 1.4E-12 107.6 12.2 165 168-343 16-217 (844)
83 KOG0947 Cytoplasmic exosomal R 98.7 2.5E-08 5.3E-13 108.4 7.6 149 164-341 294-444 (1248)
84 PRK09751 putative ATP-dependen 98.7 1.5E-07 3.2E-12 110.5 14.5 147 192-351 1-177 (1490)
85 PHA02653 RNA helicase NPH-II; 98.7 1.8E-07 3.9E-12 103.0 13.3 160 162-342 155-332 (675)
86 COG4581 Superfamily II RNA hel 98.7 1.3E-07 2.9E-12 106.1 12.3 165 163-356 115-283 (1041)
87 PRK15483 type III restriction- 98.7 5.1E-07 1.1E-11 101.2 16.3 150 189-343 61-240 (986)
88 TIGR03714 secA2 accessory Sec 98.6 4E-07 8.7E-12 100.3 14.8 159 167-353 68-232 (762)
89 COG1197 Mfd Transcription-repa 98.6 6E-07 1.3E-11 101.2 15.5 162 164-347 591-758 (1139)
90 KOG0952 DNA/RNA helicase MER3/ 98.6 4.9E-07 1.1E-11 99.7 14.2 154 188-360 127-299 (1230)
91 COG0513 SrmB Superfamily II DN 98.6 4.6E-07 1E-11 97.7 13.9 163 167-349 51-222 (513)
92 KOG0345 ATP-dependent RNA heli 98.6 6.7E-07 1.5E-11 90.9 13.0 136 166-315 27-171 (567)
93 PRK09694 helicase Cas3; Provis 98.6 1.5E-06 3.2E-11 98.3 16.7 179 166-350 285-489 (878)
94 COG0514 RecQ Superfamily II DN 98.5 8E-07 1.7E-11 95.0 12.9 173 167-361 17-196 (590)
95 KOG0348 ATP-dependent RNA heli 98.4 1.4E-06 3.1E-11 89.8 9.8 159 167-342 159-342 (708)
96 PRK09200 preprotein translocas 98.3 7.6E-06 1.6E-10 91.1 15.1 127 167-314 76-212 (790)
97 PRK12899 secA preprotein trans 98.3 7.5E-06 1.6E-10 91.3 14.9 151 163-344 86-245 (970)
98 KOG0347 RNA helicase [RNA proc 98.3 4.1E-06 8.9E-11 86.8 11.4 160 169-342 205-387 (731)
99 TIGR00963 secA preprotein tran 98.3 6.1E-07 1.3E-11 98.3 5.4 129 168-314 55-189 (745)
100 TIGR01970 DEAH_box_HrpB ATP-de 98.3 6.5E-06 1.4E-10 92.9 13.7 137 188-347 18-162 (819)
101 PF13086 AAA_11: AAA domain; P 98.2 9.5E-06 2.1E-10 77.8 11.3 68 167-239 1-75 (236)
102 PRK12898 secA preprotein trans 98.2 2E-05 4.3E-10 86.0 14.2 127 167-313 103-254 (656)
103 PRK11664 ATP-dependent RNA hel 98.2 1.4E-05 3.1E-10 90.4 12.3 136 188-346 21-164 (812)
104 KOG0339 ATP-dependent RNA heli 98.1 1E-05 2.2E-10 83.1 9.6 139 189-341 262-411 (731)
105 KOG0948 Nuclear exosomal RNA h 98.1 5.9E-06 1.3E-10 88.4 7.8 149 163-341 125-276 (1041)
106 smart00488 DEXDc2 DEAD-like he 98.1 5.6E-05 1.2E-09 75.6 14.4 73 167-240 8-84 (289)
107 smart00489 DEXDc3 DEAD-like he 98.1 5.6E-05 1.2E-09 75.6 14.4 73 167-240 8-84 (289)
108 COG1110 Reverse gyrase [DNA re 98.1 3.6E-05 7.8E-10 85.4 13.5 127 167-313 82-215 (1187)
109 KOG0335 ATP-dependent RNA heli 98.1 7.4E-06 1.6E-10 84.9 7.5 159 166-342 95-273 (482)
110 COG1203 CRISPR-associated heli 98.1 1.7E-05 3.7E-10 89.3 10.7 183 166-350 194-389 (733)
111 PRK13104 secA preprotein trans 98.0 4.7E-05 1E-09 85.1 13.3 143 167-342 82-230 (896)
112 TIGR01407 dinG_rel DnaQ family 98.0 4.2E-05 9.2E-10 87.7 12.9 82 167-252 245-332 (850)
113 KOG0353 ATP-dependent DNA heli 98.0 6E-05 1.3E-09 74.8 11.2 175 166-354 93-273 (695)
114 TIGR03117 cas_csf4 CRISPR-asso 98.0 9.1E-05 2E-09 81.0 13.5 79 172-252 2-86 (636)
115 KOG1513 Nuclear helicase MOP-3 98.0 2.6E-05 5.6E-10 83.9 8.8 249 161-430 258-541 (1300)
116 COG1198 PriA Primosomal protei 97.9 9.7E-05 2.1E-09 81.5 13.5 158 165-342 196-360 (730)
117 COG1202 Superfamily II helicas 97.9 4.5E-05 9.7E-10 79.7 9.5 170 166-354 215-393 (830)
118 KOG0340 ATP-dependent RNA heli 97.9 5.3E-05 1.1E-09 74.9 9.5 158 167-341 29-194 (442)
119 KOG0328 Predicted ATP-dependen 97.9 2.3E-05 5.1E-10 75.1 6.6 170 170-360 52-225 (400)
120 PRK13103 secA preprotein trans 97.9 0.00013 2.9E-09 81.4 13.2 139 167-341 82-229 (913)
121 PRK11131 ATP-dependent RNA hel 97.9 7.3E-05 1.6E-09 87.0 11.6 132 188-342 90-229 (1294)
122 PRK12904 preprotein translocas 97.8 0.00015 3.3E-09 80.9 12.8 128 167-314 81-214 (830)
123 KOG0351 ATP-dependent DNA heli 97.8 7.1E-05 1.5E-09 84.9 9.4 179 166-363 263-452 (941)
124 KOG0334 RNA helicase [RNA proc 97.8 3.1E-05 6.6E-10 86.2 5.9 162 166-343 386-558 (997)
125 PRK12326 preprotein translocas 97.8 0.00033 7.2E-09 76.5 13.6 159 167-358 78-243 (764)
126 PF07517 SecA_DEAD: SecA DEAD- 97.7 0.00021 4.6E-09 70.0 10.5 161 166-350 76-266 (266)
127 KOG4284 DEAD box protein [Tran 97.7 6.2E-05 1.3E-09 79.6 7.1 161 168-349 48-216 (980)
128 TIGR00604 rad3 DNA repair heli 97.7 0.00041 9E-09 78.1 14.3 72 167-239 10-82 (705)
129 KOG1802 RNA helicase nonsense 97.7 0.00023 5.1E-09 75.6 10.6 80 166-254 409-489 (935)
130 PF02562 PhoH: PhoH-like prote 97.7 0.00032 7E-09 66.0 10.6 150 168-347 5-161 (205)
131 KOG1803 DNA helicase [Replicat 97.7 0.00027 5.9E-09 74.7 11.1 68 162-236 180-248 (649)
132 PRK13107 preprotein translocas 97.6 0.00043 9.3E-09 77.4 12.4 153 167-354 82-240 (908)
133 PF13604 AAA_30: AAA domain; P 97.6 0.00084 1.8E-08 63.2 12.7 132 167-343 1-132 (196)
134 TIGR01967 DEAH_box_HrpA ATP-de 97.6 0.00021 4.5E-09 83.5 9.9 132 188-342 83-222 (1283)
135 KOG0352 ATP-dependent DNA heli 97.6 0.00074 1.6E-08 68.4 11.4 173 170-358 23-203 (641)
136 KOG0337 ATP-dependent RNA heli 97.5 0.00012 2.7E-09 73.9 5.5 157 167-342 43-206 (529)
137 PRK10536 hypothetical protein; 97.5 0.00043 9.4E-09 67.1 9.0 152 166-346 58-217 (262)
138 KOG0926 DEAH-box RNA helicase 97.5 0.00063 1.4E-08 73.8 11.0 103 188-312 272-383 (1172)
139 PRK12906 secA preprotein trans 97.5 0.0009 1.9E-08 74.5 12.7 128 167-314 80-213 (796)
140 KOG0951 RNA helicase BRR2, DEA 97.5 0.00034 7.4E-09 79.1 9.2 142 188-342 326-485 (1674)
141 PRK14873 primosome assembly pr 97.5 0.0012 2.7E-08 73.0 13.5 134 191-342 164-304 (665)
142 KOG0341 DEAD-box protein abstr 97.5 6.9E-05 1.5E-09 74.7 3.3 157 167-342 192-368 (610)
143 PF13401 AAA_22: AAA domain; P 97.5 0.00027 5.8E-09 61.4 6.6 115 189-341 6-125 (131)
144 KOG0333 U5 snRNP-like RNA heli 97.5 0.00036 7.8E-09 72.4 8.1 129 167-313 267-408 (673)
145 KOG0346 RNA helicase [RNA proc 97.4 0.00054 1.2E-08 69.7 8.2 154 171-341 45-211 (569)
146 PRK08074 bifunctional ATP-depe 97.4 0.0019 4E-08 74.9 13.8 84 167-253 257-346 (928)
147 PRK07246 bifunctional ATP-depe 97.4 0.0026 5.6E-08 72.6 14.4 79 167-251 245-328 (820)
148 TIGR00376 DNA helicase, putati 97.3 0.0032 6.9E-08 69.8 14.4 79 165-252 155-234 (637)
149 PF09848 DUF2075: Uncharacteri 97.3 0.00073 1.6E-08 69.7 8.8 46 190-236 4-49 (352)
150 KOG0336 ATP-dependent RNA heli 97.3 0.00083 1.8E-08 67.7 8.5 137 189-340 259-407 (629)
151 COG0556 UvrB Helicase subunit 97.2 0.00083 1.8E-08 70.1 7.5 70 171-246 16-86 (663)
152 KOG0922 DEAH-box RNA helicase 97.1 0.0023 4.9E-08 68.7 9.7 144 188-354 67-218 (674)
153 KOG0949 Predicted helicase, DE 97.1 0.0077 1.7E-07 67.0 13.3 164 170-354 514-682 (1330)
154 COG1643 HrpA HrpA-like helicas 97.0 0.003 6.6E-08 71.1 10.1 142 188-352 66-216 (845)
155 TIGR01448 recD_rel helicase, p 97.0 0.0081 1.7E-07 67.7 13.4 65 166-236 322-386 (720)
156 COG3587 Restriction endonuclea 97.0 0.0039 8.5E-08 68.5 10.4 138 190-341 77-242 (985)
157 KOG1805 DNA replication helica 96.9 0.0048 1E-07 68.7 10.3 157 157-343 655-831 (1100)
158 PRK12902 secA preprotein trans 96.9 0.0047 1E-07 69.1 10.3 125 167-314 85-218 (939)
159 KOG0326 ATP-dependent RNA heli 96.9 0.00047 1E-08 67.4 2.2 154 169-341 109-268 (459)
160 PRK11747 dinG ATP-dependent DN 96.9 0.0085 1.9E-07 67.3 12.5 84 167-252 25-118 (697)
161 CHL00122 secA preprotein trans 96.9 0.0077 1.7E-07 67.4 11.5 124 167-313 76-208 (870)
162 PF11496 HDA2-3: Class II hist 96.8 0.0011 2.3E-08 66.3 4.2 77 407-483 4-81 (297)
163 PRK04296 thymidine kinase; Pro 96.8 0.0056 1.2E-07 57.3 8.6 34 190-226 5-38 (190)
164 KOG1131 RNA polymerase II tran 96.8 0.017 3.7E-07 60.3 12.5 72 166-238 15-88 (755)
165 KOG1132 Helicase of the DEAD s 96.7 0.0068 1.5E-07 66.9 9.6 87 161-248 15-141 (945)
166 KOG0329 ATP-dependent RNA heli 96.7 0.0027 5.8E-08 60.4 5.4 137 190-342 82-228 (387)
167 PRK14956 DNA polymerase III su 96.7 0.025 5.4E-07 60.0 13.1 42 171-212 22-65 (484)
168 PF12340 DUF3638: Protein of u 96.7 0.0094 2E-07 56.8 9.0 72 166-241 22-93 (229)
169 PRK12901 secA preprotein trans 96.7 0.024 5.3E-07 64.4 13.5 140 167-340 169-316 (1112)
170 KOG0344 ATP-dependent RNA heli 96.6 0.0022 4.8E-08 67.7 4.8 136 167-316 158-303 (593)
171 TIGR01447 recD exodeoxyribonuc 96.6 0.017 3.6E-07 63.4 11.8 146 170-343 148-297 (586)
172 smart00382 AAA ATPases associa 96.6 0.015 3.2E-07 50.0 9.4 44 189-235 4-47 (148)
173 cd00009 AAA The AAA+ (ATPases 96.6 0.046 9.9E-07 47.4 12.5 39 188-229 20-58 (151)
174 PF00448 SRP54: SRP54-type pro 96.6 0.03 6.5E-07 52.6 11.7 138 190-359 4-143 (196)
175 KOG0332 ATP-dependent RNA heli 96.5 0.0055 1.2E-07 61.4 6.6 152 171-342 116-275 (477)
176 TIGR02881 spore_V_K stage V sp 96.5 0.025 5.5E-07 55.7 11.2 25 189-213 44-68 (261)
177 PRK12723 flagellar biosynthesi 96.5 0.037 8.1E-07 57.5 12.7 134 190-359 177-315 (388)
178 TIGR00631 uvrb excinuclease AB 96.4 0.032 6.8E-07 62.1 12.6 75 169-249 11-86 (655)
179 PF02399 Herpes_ori_bp: Origin 96.4 0.015 3.3E-07 64.5 9.5 130 190-342 52-191 (824)
180 PRK10875 recD exonuclease V su 96.4 0.015 3.2E-07 64.1 9.5 59 169-232 154-213 (615)
181 COG1875 NYN ribonuclease and A 96.3 0.024 5.2E-07 57.1 9.5 56 169-227 230-285 (436)
182 KOG0920 ATP-dependent RNA heli 96.2 0.03 6.5E-07 63.3 10.9 141 189-351 190-339 (924)
183 PRK12903 secA preprotein trans 96.2 0.049 1.1E-06 61.0 12.4 127 167-313 78-210 (925)
184 TIGR03015 pepcterm_ATPase puta 96.2 0.043 9.4E-07 54.0 11.1 43 169-211 25-67 (269)
185 PRK14974 cell division protein 96.2 0.092 2E-06 53.5 13.2 34 190-226 143-176 (336)
186 PRK07003 DNA polymerase III su 96.1 0.052 1.1E-06 60.3 11.9 43 171-213 20-64 (830)
187 PRK12900 secA preprotein trans 96.1 0.05 1.1E-06 61.8 11.9 142 167-340 138-284 (1025)
188 TIGR02562 cas3_yersinia CRISPR 96.1 0.084 1.8E-06 60.4 13.7 76 273-351 563-644 (1110)
189 KOG0925 mRNA splicing factor A 96.1 0.019 4.1E-07 59.5 7.9 52 301-356 159-216 (699)
190 PF13245 AAA_19: Part of AAA d 96.0 0.02 4.2E-07 45.0 6.0 44 189-232 12-56 (76)
191 PF05876 Terminase_GpA: Phage 96.0 0.02 4.4E-07 62.5 8.2 174 159-353 8-191 (557)
192 KOG0951 RNA helicase BRR2, DEA 96.0 0.043 9.3E-07 62.9 10.5 103 188-315 1160-1267(1674)
193 PRK09112 DNA polymerase III su 96.0 0.087 1.9E-06 54.2 12.1 47 166-213 23-71 (351)
194 PRK12323 DNA polymerase III su 95.9 0.14 2.9E-06 56.3 13.8 25 189-213 40-64 (700)
195 PRK14960 DNA polymerase III su 95.9 0.14 3E-06 56.3 13.7 41 172-212 20-62 (702)
196 KOG0950 DNA polymerase theta/e 95.9 0.068 1.5E-06 59.9 11.3 156 188-363 241-408 (1008)
197 PRK06526 transposase; Provisio 95.8 0.12 2.5E-06 50.8 11.7 44 188-238 99-142 (254)
198 PLN03025 replication factor C 95.7 0.097 2.1E-06 53.2 11.4 41 172-212 18-59 (319)
199 PRK07952 DNA replication prote 95.7 0.29 6.3E-06 47.6 14.0 63 170-239 79-144 (244)
200 PTZ00112 origin recognition co 95.7 0.2 4.3E-06 56.5 14.0 45 168-212 759-806 (1164)
201 PRK14949 DNA polymerase III su 95.7 0.14 3E-06 58.0 13.0 42 172-213 21-64 (944)
202 TIGR03420 DnaA_homol_Hda DnaA 95.6 0.16 3.5E-06 48.4 12.0 25 188-212 39-63 (226)
203 PRK05298 excinuclease ABC subu 95.6 0.14 3.1E-06 57.1 13.0 77 167-249 12-89 (652)
204 TIGR02768 TraA_Ti Ti-type conj 95.6 0.12 2.7E-06 58.5 12.4 60 166-232 351-410 (744)
205 PRK05707 DNA polymerase III su 95.5 0.11 2.4E-06 52.9 10.7 46 167-213 3-48 (328)
206 KOG0924 mRNA splicing factor A 95.5 0.063 1.4E-06 57.9 9.1 145 188-359 372-529 (1042)
207 KOG0327 Translation initiation 95.4 0.019 4.1E-07 57.9 4.7 156 169-342 50-211 (397)
208 PRK08084 DNA replication initi 95.3 0.21 4.5E-06 48.3 11.7 24 188-211 46-69 (235)
209 PRK05703 flhF flagellar biosyn 95.3 0.21 4.6E-06 52.7 12.4 57 301-358 299-359 (424)
210 PRK00771 signal recognition pa 95.3 0.31 6.6E-06 51.6 13.4 34 190-226 98-131 (437)
211 TIGR02880 cbbX_cfxQ probable R 95.2 0.062 1.3E-06 53.6 7.7 25 189-213 60-84 (284)
212 cd01121 Sms Sms (bacterial rad 95.2 0.26 5.6E-06 51.1 12.5 116 190-343 85-211 (372)
213 CHL00181 cbbX CbbX; Provisiona 95.2 0.13 2.9E-06 51.3 10.0 24 190-213 62-85 (287)
214 PRK14952 DNA polymerase III su 95.2 0.39 8.6E-06 52.6 14.3 43 171-213 17-61 (584)
215 PRK06645 DNA polymerase III su 95.1 0.25 5.4E-06 53.3 12.3 43 171-213 25-69 (507)
216 cd01124 KaiC KaiC is a circadi 95.1 0.19 4.2E-06 46.3 10.2 48 190-240 2-49 (187)
217 PRK06893 DNA replication initi 95.0 0.38 8.2E-06 46.3 12.4 23 190-212 42-64 (229)
218 PRK08691 DNA polymerase III su 95.0 0.72 1.6E-05 51.2 15.8 41 172-212 21-63 (709)
219 PRK04195 replication factor C 95.0 0.26 5.7E-06 53.1 12.4 42 170-211 20-63 (482)
220 cd01120 RecA-like_NTPases RecA 95.0 0.42 9.2E-06 42.4 12.0 34 191-227 3-36 (165)
221 PRK08181 transposase; Validate 95.0 0.41 8.9E-06 47.3 12.7 47 166-213 86-132 (269)
222 PRK13889 conjugal transfer rel 95.0 0.19 4.2E-06 58.2 11.7 130 167-346 346-475 (988)
223 PF13177 DNA_pol3_delta2: DNA 95.0 0.71 1.5E-05 41.9 13.3 43 172-214 2-46 (162)
224 KOG0989 Replication factor C, 95.0 0.16 3.5E-06 50.2 9.4 42 171-212 40-82 (346)
225 PRK11889 flhF flagellar biosyn 95.0 0.51 1.1E-05 48.9 13.5 127 190-358 244-379 (436)
226 PRK14958 DNA polymerase III su 94.9 0.54 1.2E-05 50.9 14.4 42 172-213 21-64 (509)
227 PRK12402 replication factor C 94.9 0.24 5.3E-06 50.4 11.4 40 173-212 21-61 (337)
228 PRK14088 dnaA chromosomal repl 94.9 0.56 1.2E-05 49.8 14.3 26 188-213 131-156 (440)
229 PRK14087 dnaA chromosomal repl 94.9 0.28 6.1E-06 52.2 12.1 43 187-230 141-183 (450)
230 TIGR00362 DnaA chromosomal rep 94.8 0.26 5.7E-06 51.8 11.5 36 188-224 137-172 (405)
231 PHA02533 17 large terminase pr 94.8 0.29 6.2E-06 53.2 11.9 159 166-353 58-222 (534)
232 PRK07994 DNA polymerase III su 94.8 0.58 1.2E-05 51.8 14.3 42 172-213 21-64 (647)
233 cd03115 SRP The signal recogni 94.8 1.6 3.6E-05 39.7 15.4 24 190-213 3-26 (173)
234 COG0464 SpoVK ATPases of the A 94.7 0.2 4.4E-06 54.1 10.6 68 167-240 249-323 (494)
235 PRK00149 dnaA chromosomal repl 94.7 0.3 6.6E-06 52.1 11.7 26 188-213 149-174 (450)
236 PRK14957 DNA polymerase III su 94.6 0.61 1.3E-05 50.7 13.7 41 172-212 21-63 (546)
237 PRK14961 DNA polymerase III su 94.5 0.34 7.3E-06 50.2 11.3 42 171-212 20-63 (363)
238 PRK14964 DNA polymerase III su 94.5 0.87 1.9E-05 48.9 14.4 42 172-213 18-61 (491)
239 PRK07940 DNA polymerase III su 94.5 0.35 7.5E-06 50.6 11.2 26 188-213 37-62 (394)
240 PRK08727 hypothetical protein; 94.4 0.5 1.1E-05 45.7 11.6 25 188-212 42-66 (233)
241 PRK14962 DNA polymerase III su 94.4 0.39 8.5E-06 51.4 11.7 24 189-212 38-61 (472)
242 PF05621 TniB: Bacterial TniB 94.4 0.64 1.4E-05 46.3 12.2 48 294-341 138-189 (302)
243 PRK06835 DNA replication prote 94.4 0.7 1.5E-05 47.1 12.9 47 167-213 160-209 (329)
244 TIGR03345 VI_ClpV1 type VI sec 94.3 0.39 8.5E-06 55.3 12.0 40 172-211 192-232 (852)
245 PF00004 AAA: ATPase family as 94.3 0.22 4.7E-06 42.8 7.9 35 190-230 1-35 (132)
246 PRK07764 DNA polymerase III su 94.3 0.53 1.1E-05 53.8 12.9 25 189-213 39-63 (824)
247 PRK06921 hypothetical protein; 94.2 0.63 1.4E-05 45.9 12.0 27 187-213 117-143 (266)
248 TIGR00596 rad1 DNA repair prot 94.2 0.81 1.8E-05 52.1 14.2 125 273-431 8-138 (814)
249 PF05496 RuvB_N: Holliday junc 94.2 0.46 9.9E-06 45.3 10.4 23 187-209 50-72 (233)
250 COG0653 SecA Preprotein transl 94.2 0.34 7.4E-06 54.3 10.9 142 188-356 94-241 (822)
251 PRK14951 DNA polymerase III su 94.1 0.62 1.4E-05 51.4 12.8 42 172-213 21-64 (618)
252 COG1435 Tdk Thymidine kinase [ 94.1 0.39 8.6E-06 44.5 9.3 36 302-340 83-118 (201)
253 TIGR02928 orc1/cdc6 family rep 94.1 0.91 2E-05 46.8 13.4 46 168-213 19-66 (365)
254 KOG0991 Replication factor C, 94.0 0.12 2.6E-06 49.1 5.9 26 187-212 48-73 (333)
255 COG2256 MGS1 ATPase related to 94.0 0.41 9E-06 49.1 10.0 25 185-209 46-70 (436)
256 PRK00411 cdc6 cell division co 93.9 1.2 2.6E-05 46.4 14.2 45 169-213 35-81 (394)
257 PRK10416 signal recognition pa 93.9 1.6 3.5E-05 44.3 14.3 34 190-226 117-150 (318)
258 PHA03372 DNA packaging termina 93.9 0.074 1.6E-06 57.2 4.8 140 195-360 210-367 (668)
259 PLN00020 ribulose bisphosphate 93.8 0.62 1.3E-05 47.8 11.1 45 187-237 148-192 (413)
260 cd01122 GP4d_helicase GP4d_hel 93.8 0.87 1.9E-05 44.8 12.1 48 190-239 33-80 (271)
261 PRK13826 Dtr system oriT relax 93.8 0.48 1E-05 55.4 11.5 131 166-346 380-510 (1102)
262 KOG0738 AAA+-type ATPase [Post 93.7 0.27 5.9E-06 50.1 8.1 48 187-240 245-292 (491)
263 COG1484 DnaC DNA replication p 93.6 1.4 3E-05 43.2 12.9 63 169-235 88-150 (254)
264 TIGR01075 uvrD DNA helicase II 93.6 1 2.2E-05 51.1 13.7 55 167-228 4-59 (715)
265 PF00308 Bac_DnaA: Bacterial d 93.6 2 4.2E-05 41.1 13.7 38 301-339 97-137 (219)
266 PRK14086 dnaA chromosomal repl 93.5 0.73 1.6E-05 50.5 11.8 27 186-212 313-339 (617)
267 PRK11823 DNA repair protein Ra 93.5 1 2.2E-05 47.9 12.8 47 190-239 83-129 (446)
268 PRK08116 hypothetical protein; 93.5 0.74 1.6E-05 45.5 11.0 62 188-252 115-187 (268)
269 PRK14963 DNA polymerase III su 93.5 1.5 3.2E-05 47.5 14.1 42 172-213 19-62 (504)
270 PRK00440 rfc replication facto 93.5 1.1 2.4E-05 45.1 12.5 40 172-211 22-62 (319)
271 COG3421 Uncharacterized protei 93.3 0.063 1.4E-06 57.2 3.2 113 194-313 4-124 (812)
272 TIGR00064 ftsY signal recognit 93.3 2.7 5.9E-05 41.6 14.7 34 190-226 75-108 (272)
273 PRK08903 DnaA regulatory inact 93.3 1.5 3.2E-05 42.0 12.6 24 188-211 43-66 (227)
274 PRK14955 DNA polymerase III su 93.3 1.2 2.7E-05 46.6 12.8 42 172-213 21-64 (397)
275 PF00580 UvrD-helicase: UvrD/R 93.2 0.14 3E-06 51.2 5.4 56 168-230 1-57 (315)
276 PRK11773 uvrD DNA-dependent he 93.2 1.3 2.8E-05 50.2 13.7 55 167-228 9-64 (721)
277 PRK09111 DNA polymerase III su 93.1 1 2.3E-05 49.6 12.4 43 171-213 28-72 (598)
278 PRK08451 DNA polymerase III su 93.1 1.4 3.1E-05 47.7 13.1 42 172-213 19-62 (535)
279 PHA03368 DNA packaging termina 93.1 0.14 3.1E-06 55.9 5.4 148 190-361 257-421 (738)
280 PRK05896 DNA polymerase III su 93.0 1.1 2.4E-05 49.1 12.1 42 172-213 21-64 (605)
281 PRK14722 flhF flagellar biosyn 93.0 1.2 2.7E-05 46.0 11.9 129 189-354 139-270 (374)
282 PRK07993 DNA polymerase III su 93.0 0.84 1.8E-05 46.6 10.7 47 167-213 2-50 (334)
283 PRK06090 DNA polymerase III su 92.8 1.2 2.7E-05 45.0 11.6 48 167-214 3-52 (319)
284 PRK08769 DNA polymerase III su 92.8 1.1 2.3E-05 45.5 11.1 48 166-213 3-52 (319)
285 TIGR00416 sms DNA repair prote 92.8 1.5 3.2E-05 46.8 12.7 47 190-239 97-143 (454)
286 PRK07471 DNA polymerase III su 92.8 1.6 3.4E-05 45.3 12.5 44 171-214 23-68 (365)
287 PRK14959 DNA polymerase III su 92.7 2.8 6.1E-05 46.2 14.9 38 176-213 25-64 (624)
288 PHA02544 44 clamp loader, smal 92.7 1.3 2.8E-05 44.7 11.8 49 301-351 100-150 (316)
289 PRK10867 signal recognition pa 92.7 2 4.3E-05 45.4 13.2 35 190-226 103-137 (433)
290 TIGR01073 pcrA ATP-dependent D 92.6 0.69 1.5E-05 52.5 10.6 54 167-227 4-58 (726)
291 PRK12422 chromosomal replicati 92.6 0.74 1.6E-05 49.0 10.0 35 188-225 142-176 (445)
292 KOG0780 Signal recognition par 92.6 0.75 1.6E-05 47.0 9.3 58 190-250 104-161 (483)
293 PTZ00293 thymidine kinase; Pro 92.5 1.4 3E-05 41.8 10.7 35 191-228 8-42 (211)
294 COG3267 ExeA Type II secretory 92.5 1.1 2.4E-05 43.3 10.1 66 169-239 34-105 (269)
295 PRK14969 DNA polymerase III su 92.4 3.8 8.3E-05 44.6 15.5 42 171-212 20-63 (527)
296 PRK05642 DNA replication initi 92.4 1.4 3E-05 42.6 10.9 24 188-211 46-69 (234)
297 PRK08058 DNA polymerase III su 92.4 2.6 5.7E-05 43.0 13.4 77 170-251 9-87 (329)
298 PRK06647 DNA polymerase III su 92.3 2.4 5.1E-05 46.6 13.6 42 172-213 21-64 (563)
299 CHL00095 clpC Clp protease ATP 92.2 1 2.3E-05 51.8 11.4 25 188-212 201-225 (821)
300 PF06733 DEAD_2: DEAD_2; Inte 92.2 0.15 3.2E-06 46.9 3.7 38 272-314 119-158 (174)
301 PRK06871 DNA polymerase III su 92.2 1.7 3.6E-05 44.2 11.5 46 168-213 3-50 (325)
302 PHA03333 putative ATPase subun 92.1 1.8 4E-05 47.7 12.3 149 170-342 172-332 (752)
303 COG4626 Phage terminase-like p 92.1 1.7 3.7E-05 46.6 11.8 173 162-356 56-242 (546)
304 PRK13342 recombination factor 92.0 2 4.3E-05 45.3 12.4 23 188-210 37-59 (413)
305 TIGR01242 26Sp45 26S proteasom 91.9 1.3 2.8E-05 45.9 10.7 23 188-210 157-179 (364)
306 KOG0923 mRNA splicing factor A 91.8 0.33 7.1E-06 52.6 6.1 148 189-360 282-440 (902)
307 COG1199 DinG Rad3-related DNA 91.7 0.58 1.3E-05 52.4 8.5 70 166-238 14-84 (654)
308 COG0552 FtsY Signal recognitio 91.7 1.8 4E-05 43.5 10.9 127 190-349 142-277 (340)
309 PRK08533 flagellar accessory p 91.6 3.2 7E-05 39.9 12.4 46 189-237 26-71 (230)
310 KOG0952 DNA/RNA helicase MER3/ 91.6 0.2 4.3E-06 56.8 4.4 112 189-316 945-1061(1230)
311 TIGR00959 ffh signal recogniti 91.6 2.8 6.1E-05 44.3 12.9 35 190-226 102-136 (428)
312 PRK10865 protein disaggregatio 91.6 1.2 2.6E-05 51.5 10.9 38 174-211 185-223 (857)
313 TIGR01425 SRP54_euk signal rec 91.5 3.9 8.4E-05 43.1 13.7 34 190-226 103-136 (429)
314 PRK00080 ruvB Holliday junctio 91.5 3.5 7.6E-05 41.9 13.3 43 169-211 30-75 (328)
315 COG1066 Sms Predicted ATP-depe 91.3 4.2 9.1E-05 42.2 13.1 113 190-341 96-219 (456)
316 CHL00206 ycf2 Ycf2; Provisiona 91.3 0.77 1.7E-05 56.0 9.0 42 187-234 1630-1671(2281)
317 TIGR03346 chaperone_ClpB ATP-d 91.3 0.87 1.9E-05 52.6 9.4 40 172-211 178-218 (852)
318 PRK05563 DNA polymerase III su 91.2 3.2 6.9E-05 45.6 13.3 25 189-213 40-64 (559)
319 PRK14948 DNA polymerase III su 91.2 2 4.4E-05 47.6 11.8 43 171-213 20-64 (620)
320 PF00265 TK: Thymidine kinase; 91.1 0.67 1.5E-05 42.7 6.8 34 191-227 5-38 (176)
321 PRK14953 DNA polymerase III su 91.0 6 0.00013 42.6 15.0 42 171-212 20-63 (486)
322 PRK07133 DNA polymerase III su 90.9 2.1 4.5E-05 48.0 11.5 42 172-213 23-66 (725)
323 COG2842 Uncharacterized ATPase 90.9 2.1 4.6E-05 42.3 10.2 157 137-342 47-203 (297)
324 PRK14712 conjugal transfer nic 90.8 1.7 3.6E-05 52.9 11.2 64 164-230 832-896 (1623)
325 TIGR02639 ClpA ATP-dependent C 90.8 2.8 6E-05 47.7 12.7 27 186-212 202-228 (731)
326 COG0470 HolB ATPase involved i 90.8 2.1 4.6E-05 43.0 10.8 24 190-213 27-50 (325)
327 PRK12377 putative replication 90.7 2.7 5.9E-05 41.0 10.9 64 186-252 100-172 (248)
328 PRK03992 proteasome-activating 90.6 0.42 9E-06 50.0 5.5 24 188-211 166-189 (389)
329 PRK11034 clpA ATP-dependent Cl 90.6 1.4 2.9E-05 50.1 9.9 24 188-211 208-231 (758)
330 TIGR03877 thermo_KaiC_1 KaiC d 90.5 1.8 3.9E-05 41.9 9.5 48 189-239 23-70 (237)
331 TIGR00635 ruvB Holliday juncti 90.5 2.8 6.1E-05 42.0 11.3 24 188-211 31-54 (305)
332 PRK13709 conjugal transfer nic 90.4 2 4.4E-05 52.8 11.6 63 165-230 965-1028(1747)
333 PRK09183 transposase/IS protei 90.4 3 6.6E-05 40.9 11.2 24 188-211 103-126 (259)
334 PRK11054 helD DNA helicase IV; 90.4 0.77 1.7E-05 51.5 7.7 69 166-241 195-265 (684)
335 TIGR01243 CDC48 AAA family ATP 90.3 1 2.2E-05 51.3 8.7 40 188-233 488-527 (733)
336 PRK14954 DNA polymerase III su 90.3 3.1 6.7E-05 46.1 12.1 43 171-213 20-64 (620)
337 PRK14950 DNA polymerase III su 90.2 4.4 9.5E-05 44.8 13.3 42 171-212 20-63 (585)
338 PRK06731 flhF flagellar biosyn 90.1 8.2 0.00018 38.1 13.8 57 301-358 154-213 (270)
339 PRK06067 flagellar accessory p 90.1 5.5 0.00012 38.2 12.5 49 189-240 27-75 (234)
340 KOG0740 AAA+-type ATPase [Post 90.1 0.42 9.1E-06 49.9 4.9 48 187-240 186-233 (428)
341 PF13481 AAA_25: AAA domain; P 90.1 5.5 0.00012 36.7 12.2 52 190-241 35-93 (193)
342 PRK05986 cob(I)alamin adenolsy 90.0 4.8 0.0001 37.5 11.3 33 189-224 24-56 (191)
343 PRK06964 DNA polymerase III su 89.9 2.6 5.7E-05 43.1 10.5 46 168-213 2-47 (342)
344 PRK12724 flagellar biosynthesi 89.9 4.4 9.6E-05 42.5 12.2 62 297-359 295-362 (432)
345 PRK14965 DNA polymerase III su 89.8 6.1 0.00013 43.6 13.9 42 172-213 21-64 (576)
346 PRK09087 hypothetical protein; 89.7 3.3 7.1E-05 39.8 10.5 37 303-340 89-125 (226)
347 CHL00176 ftsH cell division pr 89.4 3.2 6.9E-05 46.2 11.5 22 188-209 217-238 (638)
348 PRK12727 flagellar biosynthesi 89.4 8.1 0.00018 41.8 13.9 35 190-225 353-387 (559)
349 TIGR03878 thermo_KaiC_2 KaiC d 89.4 3.3 7.1E-05 40.7 10.5 34 190-226 39-72 (259)
350 PRK09376 rho transcription ter 89.3 1.2 2.5E-05 46.2 7.4 36 175-212 159-194 (416)
351 KOG0739 AAA+-type ATPase [Post 89.3 1.1 2.3E-05 44.3 6.7 48 187-240 166-213 (439)
352 PRK13341 recombination factor 89.2 3.4 7.3E-05 46.7 11.6 24 187-210 52-75 (725)
353 PF01443 Viral_helicase1: Vira 89.2 1.5 3.4E-05 41.8 8.0 43 300-347 61-103 (234)
354 cd00984 DnaB_C DnaB helicase C 89.2 8.2 0.00018 37.1 13.1 37 190-228 16-52 (242)
355 COG2255 RuvB Holliday junction 89.1 1.5 3.3E-05 43.1 7.5 22 188-209 53-74 (332)
356 COG0541 Ffh Signal recognition 89.1 6.2 0.00014 41.2 12.4 59 190-251 103-161 (451)
357 PRK12726 flagellar biosynthesi 89.1 11 0.00023 39.2 14.1 43 190-235 209-255 (407)
358 cd00561 CobA_CobO_BtuR ATP:cor 89.1 4.5 9.8E-05 36.6 10.2 135 190-351 5-147 (159)
359 PF07015 VirC1: VirC1 protein; 89.1 5.2 0.00011 38.4 11.1 42 194-238 9-52 (231)
360 PTZ00454 26S protease regulato 89.0 0.66 1.4E-05 48.6 5.4 23 188-210 180-202 (398)
361 KOG0737 AAA+-type ATPase [Post 88.9 0.84 1.8E-05 46.4 5.8 49 187-241 127-175 (386)
362 PRK06904 replicative DNA helic 88.8 7.4 0.00016 41.8 13.4 49 190-240 224-272 (472)
363 PRK13894 conjugal transfer ATP 88.7 18 0.0004 36.6 15.5 40 168-211 133-172 (319)
364 COG0593 DnaA ATPase involved i 88.3 7.1 0.00015 40.8 12.4 55 301-356 175-236 (408)
365 TIGR00678 holB DNA polymerase 88.3 3.4 7.3E-05 38.2 9.3 25 189-213 16-40 (188)
366 PRK04132 replication factor C 88.3 2.4 5.2E-05 48.5 9.6 49 301-352 630-680 (846)
367 PRK06305 DNA polymerase III su 88.3 8.5 0.00018 41.1 13.4 43 171-213 21-65 (451)
368 TIGR02760 TraI_TIGR conjugativ 88.2 2.1 4.5E-05 53.8 9.9 62 166-230 1018-1080(1960)
369 PF13173 AAA_14: AAA domain 88.2 2.4 5.2E-05 36.5 7.7 39 301-343 61-100 (128)
370 TIGR03880 KaiC_arch_3 KaiC dom 88.2 4.1 8.8E-05 38.8 10.0 49 190-241 19-67 (224)
371 TIGR02397 dnaX_nterm DNA polym 88.1 7 0.00015 39.9 12.5 41 172-212 19-61 (355)
372 cd01125 repA Hexameric Replica 88.0 9 0.0002 36.9 12.5 37 190-226 4-49 (239)
373 TIGR01074 rep ATP-dependent DN 87.6 1.8 4E-05 48.6 8.4 67 168-241 2-70 (664)
374 TIGR00708 cobA cob(I)alamin ad 87.6 2.3 5E-05 38.9 7.4 56 294-351 90-149 (173)
375 PF05707 Zot: Zonular occluden 87.5 1.1 2.3E-05 41.9 5.4 17 191-207 4-20 (193)
376 TIGR03689 pup_AAA proteasome A 87.5 1.2 2.6E-05 48.0 6.4 24 188-211 217-240 (512)
377 PRK09361 radB DNA repair and r 87.4 13 0.00028 35.4 13.0 35 190-227 26-60 (225)
378 PRK04328 hypothetical protein; 87.3 4.3 9.3E-05 39.6 9.7 47 190-239 26-72 (249)
379 PRK08760 replicative DNA helic 87.2 5.1 0.00011 43.1 11.0 50 190-241 232-281 (476)
380 PF06564 YhjQ: YhjQ protein; 87.0 2.8 6.1E-05 40.6 8.0 37 191-230 6-44 (243)
381 TIGR02237 recomb_radB DNA repa 87.0 5.8 0.00013 37.2 10.2 36 190-228 15-50 (209)
382 PF03354 Terminase_1: Phage Te 86.9 2.2 4.8E-05 45.9 8.1 58 170-227 1-63 (477)
383 PRK10919 ATP-dependent DNA hel 86.8 0.77 1.7E-05 51.6 4.7 55 167-228 2-57 (672)
384 PRK06995 flhF flagellar biosyn 86.6 4.2 9.1E-05 43.6 9.8 23 190-212 259-281 (484)
385 COG3973 Superfamily I DNA and 86.5 1.3 2.7E-05 47.9 5.7 63 167-235 212-277 (747)
386 COG1419 FlhF Flagellar GTP-bin 86.4 8.5 0.00018 40.0 11.5 59 301-360 281-342 (407)
387 PRK05748 replicative DNA helic 86.3 9.6 0.00021 40.6 12.5 47 190-238 206-252 (448)
388 TIGR01547 phage_term_2 phage t 86.2 2.6 5.7E-05 44.0 8.1 134 190-343 4-142 (396)
389 cd02037 MRP-like MRP (Multiple 86.0 13 0.00029 33.5 11.7 53 300-358 66-118 (169)
390 KOG0731 AAA+-type ATPase conta 85.7 4.7 0.0001 45.2 9.9 57 293-363 464-520 (774)
391 PRK08699 DNA polymerase III su 85.5 12 0.00025 38.2 12.1 46 168-213 2-47 (325)
392 PF01695 IstB_IS21: IstB-like 85.3 1.3 2.8E-05 40.9 4.6 36 187-225 47-82 (178)
393 TIGR02760 TraI_TIGR conjugativ 84.9 11 0.00024 47.6 13.7 153 166-356 428-581 (1960)
394 PRK14721 flhF flagellar biosyn 84.8 11 0.00024 39.7 11.7 58 301-359 269-329 (420)
395 CHL00195 ycf46 Ycf46; Provisio 84.8 1.3 2.9E-05 47.6 5.0 34 188-227 260-293 (489)
396 TIGR02655 circ_KaiC circadian 84.7 4.6 9.9E-05 43.6 9.2 48 190-240 266-313 (484)
397 TIGR03346 chaperone_ClpB ATP-d 84.6 7.5 0.00016 45.1 11.4 23 189-211 597-619 (852)
398 PHA02542 41 41 helicase; Provi 84.6 8.8 0.00019 41.2 11.1 45 190-237 193-237 (473)
399 cd02034 CooC The accessory pro 84.4 14 0.00031 31.3 10.4 58 190-252 2-59 (116)
400 PHA00012 I assembly protein 84.4 2.2 4.8E-05 43.0 6.0 21 191-211 5-25 (361)
401 PF06745 KaiC: KaiC; InterPro 84.2 2.1 4.5E-05 40.9 5.7 51 189-241 21-71 (226)
402 PRK10923 glnG nitrogen regulat 84.1 31 0.00067 36.8 15.3 43 188-233 162-204 (469)
403 TIGR00665 DnaB replicative DNA 84.1 14 0.0003 39.2 12.5 47 190-238 198-244 (434)
404 PRK07399 DNA polymerase III su 84.0 17 0.00037 36.8 12.5 42 172-213 9-52 (314)
405 TIGR03600 phage_DnaB phage rep 84.0 9.7 0.00021 40.2 11.2 46 190-237 197-242 (421)
406 COG1702 PhoH Phosphate starvat 83.9 0.54 1.2E-05 47.3 1.5 54 167-226 128-181 (348)
407 PRK14971 DNA polymerase III su 83.9 23 0.00049 39.4 14.3 41 172-212 22-64 (614)
408 TIGR02640 gas_vesic_GvpN gas v 83.8 3.6 7.9E-05 40.4 7.4 49 170-225 5-53 (262)
409 COG2812 DnaX DNA polymerase II 83.7 2.1 4.6E-05 46.0 5.9 42 172-213 21-64 (515)
410 PRK13833 conjugal transfer pro 83.6 3.6 7.7E-05 41.8 7.3 41 167-211 128-168 (323)
411 TIGR00767 rho transcription te 83.4 5.3 0.00012 41.6 8.5 25 186-211 168-192 (415)
412 PHA02244 ATPase-like protein 83.4 11 0.00023 39.0 10.6 23 188-210 120-142 (383)
413 CHL00095 clpC Clp protease ATP 83.4 8.5 0.00018 44.4 11.1 42 171-212 513-564 (821)
414 cd01129 PulE-GspE PulE/GspE Th 83.3 2.8 6.1E-05 41.3 6.3 42 167-211 63-104 (264)
415 PRK05973 replicative DNA helic 83.2 3 6.4E-05 40.4 6.3 48 189-239 66-113 (237)
416 PRK10865 protein disaggregatio 83.2 8.3 0.00018 44.7 10.9 23 189-211 600-622 (857)
417 TIGR01241 FtsH_fam ATP-depende 83.2 1.6 3.4E-05 47.2 4.9 22 188-209 89-110 (495)
418 TIGR02012 tigrfam_recA protein 83.1 14 0.00031 37.4 11.3 55 174-232 41-97 (321)
419 KOG2028 ATPase related to the 83.0 6.1 0.00013 40.3 8.4 24 185-208 160-183 (554)
420 PRK08840 replicative DNA helic 82.8 15 0.00033 39.3 12.0 48 190-239 220-267 (464)
421 PF03237 Terminase_6: Terminas 82.4 8.6 0.00019 39.1 9.9 50 294-345 90-141 (384)
422 PTZ00361 26 proteosome regulat 82.3 1.6 3.4E-05 46.3 4.3 23 188-210 218-240 (438)
423 PRK15429 formate hydrogenlyase 82.2 61 0.0013 36.6 17.3 35 188-225 400-434 (686)
424 PRK05022 anaerobic nitric oxid 82.0 70 0.0015 34.7 17.1 40 185-227 208-247 (509)
425 PF06068 TIP49: TIP49 C-termin 82.0 2.3 5E-05 43.6 5.1 61 163-229 25-88 (398)
426 TIGR03499 FlhF flagellar biosy 81.9 6.1 0.00013 39.3 8.2 36 190-226 197-232 (282)
427 TIGR02974 phageshock_pspF psp 81.5 21 0.00045 36.4 12.1 43 188-233 23-65 (329)
428 PF03796 DnaB_C: DnaB-like hel 81.5 7 0.00015 38.2 8.4 41 190-232 22-62 (259)
429 KOG0734 AAA+-type ATPase conta 81.2 11 0.00024 40.4 9.9 60 299-363 394-464 (752)
430 COG1224 TIP49 DNA helicase TIP 81.0 2.2 4.7E-05 43.4 4.4 52 160-211 37-89 (450)
431 PRK09165 replicative DNA helic 81.0 24 0.00052 38.2 12.9 51 190-240 220-282 (497)
432 COG1373 Predicted ATPase (AAA+ 80.6 9.5 0.00021 40.0 9.4 110 233-349 25-138 (398)
433 TIGR02639 ClpA ATP-dependent C 80.3 16 0.00035 41.5 11.9 23 189-211 486-508 (731)
434 PRK07004 replicative DNA helic 80.2 19 0.00041 38.6 11.7 47 190-238 216-262 (460)
435 COG1474 CDC6 Cdc6-related prot 80.0 44 0.00096 34.6 14.0 47 167-213 20-68 (366)
436 PRK08939 primosomal protein Dn 79.9 5.8 0.00012 40.0 7.3 34 188-224 157-190 (306)
437 cd01128 rho_factor Transcripti 79.6 12 0.00026 36.5 9.2 20 190-209 19-38 (249)
438 KOG1133 Helicase of the DEAD s 79.3 1.2 2.5E-05 48.7 2.1 62 234-313 299-360 (821)
439 PRK14723 flhF flagellar biosyn 79.1 16 0.00035 41.4 11.0 36 190-226 188-223 (767)
440 TIGR02782 TrbB_P P-type conjug 78.9 5.8 0.00013 39.9 6.9 34 177-211 123-156 (299)
441 PRK10733 hflB ATP-dependent me 78.8 8.1 0.00018 43.3 8.7 22 188-209 186-207 (644)
442 PRK08006 replicative DNA helic 78.2 27 0.00059 37.5 12.1 48 190-239 227-274 (471)
443 COG0467 RAD55 RecA-superfamily 77.7 6.3 0.00014 38.5 6.7 47 189-238 25-71 (260)
444 TIGR02533 type_II_gspE general 77.6 5.1 0.00011 43.2 6.4 41 167-211 225-266 (486)
445 COG2804 PulE Type II secretory 77.4 20 0.00044 38.2 10.5 43 167-213 241-284 (500)
446 PRK09302 circadian clock prote 77.2 7.2 0.00016 42.3 7.6 49 190-241 276-324 (509)
447 PRK05595 replicative DNA helic 77.1 24 0.00051 37.6 11.3 49 190-240 204-252 (444)
448 PRK11034 clpA ATP-dependent Cl 77.1 16 0.00035 41.6 10.5 24 188-211 489-512 (758)
449 KOG2543 Origin recognition com 77.0 97 0.0021 32.2 18.7 229 167-427 9-256 (438)
450 COG0553 HepA Superfamily II DN 77.0 3.1 6.7E-05 48.0 5.0 187 165-363 82-289 (866)
451 TIGR01243 CDC48 AAA family ATP 77.0 4.4 9.6E-05 46.1 6.1 23 188-210 213-235 (733)
452 PF01637 Arch_ATPase: Archaeal 76.6 23 0.0005 33.1 10.2 24 188-211 21-44 (234)
453 COG3972 Superfamily I DNA and 76.3 33 0.00072 36.6 11.4 36 196-232 185-220 (660)
454 PRK10436 hypothetical protein; 76.3 6.4 0.00014 42.1 6.7 42 167-211 201-242 (462)
455 PRK06620 hypothetical protein; 76.1 33 0.00072 32.5 11.0 105 221-344 17-125 (214)
456 TIGR02915 PEP_resp_reg putativ 76.0 1.1E+02 0.0024 32.3 16.3 43 188-233 163-205 (445)
457 PRK07276 DNA polymerase III su 75.7 35 0.00076 34.1 11.3 46 167-213 2-48 (290)
458 TIGR02329 propionate_PrpR prop 75.7 30 0.00066 37.7 11.7 59 176-237 224-283 (526)
459 TIGR03881 KaiC_arch_4 KaiC dom 75.5 8.4 0.00018 36.7 6.8 45 190-237 23-67 (229)
460 PF00437 T2SE: Type II/IV secr 75.3 4.7 0.0001 39.6 5.1 24 188-211 128-151 (270)
461 PRK08506 replicative DNA helic 74.9 47 0.001 35.7 12.9 46 190-238 195-240 (472)
462 PRK09302 circadian clock prote 74.9 16 0.00034 39.7 9.4 65 174-241 18-83 (509)
463 cd01393 recA_like RecA is a b 74.8 73 0.0016 30.0 13.2 40 190-229 22-64 (226)
464 PRK11361 acetoacetate metaboli 74.5 97 0.0021 32.8 15.3 43 188-233 167-209 (457)
465 TIGR03345 VI_ClpV1 type VI sec 73.7 18 0.0004 41.9 9.9 23 190-212 599-621 (852)
466 KOG0726 26S proteasome regulat 73.5 1.9 4.2E-05 42.4 1.7 24 186-209 218-241 (440)
467 PF12846 AAA_10: AAA-like doma 73.4 7.8 0.00017 38.2 6.2 45 189-236 3-47 (304)
468 KOG1807 Helicases [Replication 73.3 21 0.00045 39.9 9.5 81 166-252 377-461 (1025)
469 cd00983 recA RecA is a bacter 73.3 23 0.0005 36.0 9.5 39 190-231 58-96 (325)
470 PF10446 DUF2457: Protein of u 73.2 0.55 1.2E-05 48.4 -2.1 18 9-26 8-25 (458)
471 PRK09354 recA recombinase A; P 72.9 14 0.00031 37.8 7.9 40 190-232 63-102 (349)
472 PF02572 CobA_CobO_BtuR: ATP:c 72.8 35 0.00076 31.3 9.6 59 294-355 89-149 (172)
473 KOG1942 DNA helicase, TBP-inte 72.7 5.8 0.00013 39.3 4.7 51 161-211 37-88 (456)
474 PRK05564 DNA polymerase III su 72.5 35 0.00075 34.4 10.7 24 189-212 28-51 (313)
475 COG0542 clpA ATP-binding subun 72.5 8.7 0.00019 43.4 6.7 22 190-211 194-215 (786)
476 TIGR00602 rad24 checkpoint pro 72.5 30 0.00065 38.5 10.9 20 190-209 113-132 (637)
477 COG4172 ABC-type uncharacteriz 72.4 9 0.00019 39.8 6.2 24 190-213 39-62 (534)
478 PRK15424 propionate catabolism 72.4 33 0.00071 37.5 10.9 62 176-237 231-298 (538)
479 PF02456 Adeno_IVa2: Adenoviru 72.2 8.9 0.00019 38.3 5.9 104 190-312 90-207 (369)
480 PF05970 PIF1: PIF1-like helic 72.1 12 0.00025 38.8 7.2 61 167-230 1-62 (364)
481 KOG0733 Nuclear AAA ATPase (VC 72.0 4.6 0.0001 43.9 4.2 45 188-238 546-590 (802)
482 PRK12608 transcription termina 71.9 16 0.00035 37.7 8.0 42 169-212 117-158 (380)
483 PF05729 NACHT: NACHT domain 71.8 6.3 0.00014 34.9 4.6 25 190-214 3-27 (166)
484 TIGR01817 nifA Nif-specific re 71.5 42 0.00091 36.6 11.8 43 188-233 220-262 (534)
485 PRK07773 replicative DNA helic 71.5 31 0.00068 40.2 11.3 48 190-239 220-267 (886)
486 COG0003 ArsA Predicted ATPase 71.2 21 0.00046 36.2 8.6 31 191-224 6-36 (322)
487 TIGR02538 type_IV_pilB type IV 71.0 10 0.00022 41.7 6.8 42 167-211 299-340 (564)
488 PHA00350 putative assembly pro 70.7 23 0.00049 37.1 8.9 17 191-207 5-21 (399)
489 PF01580 FtsK_SpoIIIE: FtsK/Sp 70.6 7.3 0.00016 36.5 5.0 39 189-227 40-79 (205)
490 COG3598 RepA RecA-family ATPas 70.4 30 0.00064 35.0 9.0 41 185-226 88-135 (402)
491 COG0305 DnaB Replicative DNA h 70.4 41 0.00088 35.6 10.7 136 176-317 186-322 (435)
492 TIGR03574 selen_PSTK L-seryl-t 70.3 31 0.00067 33.4 9.5 23 190-212 2-24 (249)
493 PRK15115 response regulator Gl 70.2 62 0.0013 34.2 12.6 43 188-233 158-200 (444)
494 PRK07414 cob(I)yrinic acid a,c 70.0 89 0.0019 28.8 11.6 53 294-348 108-164 (178)
495 TIGR02785 addA_Gpos recombinat 70.0 11 0.00023 45.7 7.2 59 168-233 2-60 (1232)
496 TIGR00150 HI0065_YjeE ATPase, 69.9 14 0.00031 32.3 6.2 37 190-232 25-61 (133)
497 TIGR02788 VirB11 P-type DNA tr 69.9 50 0.0011 33.2 11.1 23 188-210 145-167 (308)
498 TIGR03575 selen_PSTK_euk L-ser 69.3 31 0.00067 35.3 9.4 35 190-226 2-36 (340)
499 KOG0736 Peroxisome assembly fa 69.1 11 0.00024 42.2 6.4 22 188-209 706-727 (953)
500 cd01983 Fer4_NifH The Fer4_Nif 68.8 11 0.00023 29.7 5.0 32 191-225 3-34 (99)
No 1
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-75 Score=608.94 Aligned_cols=329 Identities=48% Similarity=0.793 Sum_probs=290.3
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeE
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSV 246 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v 246 (520)
+|+|||+.||+||.-++.++.+| |||||||||||+|+|||+++|+. .+..||+|||||.|++.||.+||.+|||.++|
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~g-ILADEMGLGKTiQvIaFlayLkq-~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~V 476 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNG-ILADEMGLGKTIQVIAFLAYLKQ-IGNPGPHLVVVPSSTLENWLREFAKWCPSLKV 476 (941)
T ss_pred cccchhhhhHHHHHHHHHccccc-eehhhccCcchhHHHHHHHHHHH-cCCCCCcEEEecchhHHHHHHHHHHhCCceEE
Confidence 69999999999999999999987 99999999999999999999987 55699999999999999999999999999999
Q ss_pred EEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHH
Q 039292 247 LQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMS 326 (520)
Q Consensus 247 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~ 326 (520)
..|+|+...+ +.++........ +|+|++|||..+.. .++++.+|+..+|+++|+||+|.+||..|.+|+.++.
T Consensus 477 e~YyGSq~ER--~~lR~~i~~~~~-~ydVllTTY~la~~----~kdDRsflk~~~~n~viyDEgHmLKN~~SeRy~~LM~ 549 (941)
T KOG0389|consen 477 EPYYGSQDER--RELRERIKKNKD-DYDVLLTTYNLAAS----SKDDRSFLKNQKFNYVIYDEGHMLKNRTSERYKHLMS 549 (941)
T ss_pred EeccCcHHHH--HHHHHHHhccCC-CccEEEEEeecccC----ChHHHHHHHhccccEEEecchhhhhccchHHHHHhcc
Confidence 9999998443 333333333333 79999999998874 5569999999999999999999999999999999999
Q ss_pred HhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCCc------------hHHHHHHHHhhcchhhhe
Q 039292 327 VARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGED------------RDLIGRMKSILGPFILRR 394 (520)
Q Consensus 327 l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~~------------~~~~~~L~~~l~~~~lRR 394 (520)
+ ++.+||+|||||+|||+.|||+||.|+.|++|.+....+..++.... .+.+.+.+.+|+||+|||
T Consensus 550 I--~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 550 I--NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred c--cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 9 89999999999999999999999999999999999888888776433 456899999999999999
Q ss_pred eHhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCccc
Q 039292 395 LKSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHPLL 474 (520)
Q Consensus 395 ~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP~L 474 (520)
.|++|+++||||+.++.+|+|+..|+++|..+++.+.... ...+. + + ...-.++||+|||++|||.|
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~----~~~~~-n--s------~~~~~~vlmqlRK~AnHPLL 694 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKL----NEVSK-N--S------ELKSGNVLMQLRKAANHPLL 694 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhc----ccccc-c--c------ccccchHHHHHHHHhcChhH
Confidence 9999999999999999999999999999999988762111 11111 0 0 00115689999999999999
Q ss_pred ccccCCChHHHHHHHhhCCCCCccccccHHHHHHHHhcCCCcccCC
Q 039292 475 VRRIYSDDDVVRFAKKLHPMGAFGFECTLERVIEELKNYSDFSIHQ 520 (520)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~h~ 520 (520)
+|.+|+++.+.+|+++++.++.+.+ ++.++|+|+|.+||||+|||
T Consensus 695 ~R~~Y~de~L~~mak~il~e~ay~~-~n~qyIfEDm~~msDfelHq 739 (941)
T KOG0389|consen 695 FRSIYTDEKLRKMAKRILNEPAYKK-ANEQYIFEDMEVMSDFELHQ 739 (941)
T ss_pred HHHhccHHHHHHHHHHHhCchhhhh-cCHHHHHHHHHhhhHHHHHH
Confidence 9999999999999999999999965 99999999999999999996
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.6e-68 Score=552.05 Aligned_cols=332 Identities=36% Similarity=0.626 Sum_probs=277.9
Q ss_pred CCCCCc-cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 160 EDSDFQ-PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 160 ~~~~~~-~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
.|..+. ..|||||++|++||..++..|++| |||||||||||+|+|+|+.+++...+..||+||+||.|++.||.+||.
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~enging-ILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~ 237 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGING-ILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFK 237 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCccc-EeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHH
Confidence 455566 799999999999999999999865 999999999999999999999998888999999999999999999999
Q ss_pred HhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch
Q 039292 239 KWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 239 ~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
+|+|++++++|+|....+.... .... ..+.++|+||||++..+ +..+|..+.|.++||||||||||.+|
T Consensus 238 rf~P~l~~~~~~Gdk~eR~~~~-r~~~---~~~~fdV~iTsYEi~i~-------dk~~lk~~~W~ylvIDEaHRiKN~~s 306 (971)
T KOG0385|consen 238 RFTPSLNVVVYHGDKEERAALR-RDIM---LPGRFDVCITSYEIAIK-------DKSFLKKFNWRYLVIDEAHRIKNEKS 306 (971)
T ss_pred HhCCCcceEEEeCCHHHHHHHH-HHhh---ccCCCceEeehHHHHHh-------hHHHHhcCCceEEEechhhhhcchhh
Confidence 9999999999999975443222 2222 22379999999999998 88999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhc---CCchHHHHHHHHhhcchhhhee
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLN---GEDRDLIGRMKSILGPFILRRL 395 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~---~~~~~~~~~L~~~l~~~~lRR~ 395 (520)
..++.++.+ ++.+|++|||||+|||+.|||+||+||.|++|++.+.|-..|.. ..+.+.+.+||.+|+||+|||.
T Consensus 307 ~L~~~lr~f--~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~ 384 (971)
T KOG0385|consen 307 KLSKILREF--KTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRI 384 (971)
T ss_pred HHHHHHHHh--cccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHH
Confidence 999999999 89999999999999999999999999999999997766555433 4566799999999999999999
Q ss_pred HhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCcccc
Q 039292 396 KSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHPLLV 475 (520)
Q Consensus 396 k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP~L~ 475 (520)
|.+|...||||.+.+++|.||..|++.|+.++..-...+ ... +......++|++|+||||||||||+
T Consensus 385 K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~-------n~~------~~~~k~kL~NI~mQLRKccnHPYLF 451 (971)
T KOG0385|consen 385 KSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDAL-------NGE------GKGEKTKLQNIMMQLRKCCNHPYLF 451 (971)
T ss_pred HHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhh-------ccc------ccchhhHHHHHHHHHHHhcCCcccc
Confidence 999999999999999999999999999999876422211 000 1113568999999999999999999
Q ss_pred cccCC------ChH----------HHHHHHhhCC----CCCccccccHHHHHHHHhcCCCccc
Q 039292 476 RRIYS------DDD----------VVRFAKKLHP----MGAFGFECTLERVIEELKNYSDFSI 518 (520)
Q Consensus 476 ~~~~~------~~~----------~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~ 518 (520)
.++.. ++. +.++...+.. ...|+.+..+-.|++++..+.+|+.
T Consensus 452 ~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~y 514 (971)
T KOG0385|consen 452 DGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEY 514 (971)
T ss_pred CCCCCCCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCcee
Confidence 88533 233 2333444433 3357666677778887777776653
No 3
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1e-64 Score=538.90 Aligned_cols=292 Identities=40% Similarity=0.660 Sum_probs=257.4
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 159 DEDSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 159 ~~~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
-+|..+.+.||.||..|++||..++.++.+| |||||||||||||+|+|+++|....+++||+|||||++++.||.-||+
T Consensus 607 pvPsLLrGqLReYQkiGLdWLatLYeknlNG-ILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElK 685 (1958)
T KOG0391|consen 607 PVPSLLRGQLREYQKIGLDWLATLYEKNLNG-ILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELK 685 (1958)
T ss_pred CchHHHHHHHHHHHHhhHHHHHHHHHhcccc-eehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHh
Confidence 3678889999999999999999999999988 999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch
Q 039292 239 KWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 239 ~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
+|||+++++.|+|+.+.+..++..+ ..+..|+|+||+|..+.. +...|.+.+|.|+|+||||+|||..|
T Consensus 686 RwcPglKILTYyGs~kErkeKRqgW----~kPnaFHVCItSYklv~q-------d~~AFkrkrWqyLvLDEaqnIKnfks 754 (1958)
T KOG0391|consen 686 RWCPGLKILTYYGSHKERKEKRQGW----AKPNAFHVCITSYKLVFQ-------DLTAFKRKRWQYLVLDEAQNIKNFKS 754 (1958)
T ss_pred hhCCcceEeeecCCHHHHHHHhhcc----cCCCeeEEeehhhHHHHh-------HHHHHHhhccceeehhhhhhhcchhH
Confidence 9999999999999987664443221 224468999999999988 88899999999999999999999999
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcC----------CchHHHHHHHHhhc
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNG----------EDRDLIGRMKSILG 388 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~----------~~~~~~~~L~~~l~ 388 (520)
.+|+++..+ ++.+|++|||||+||++.|||+|++||+|..|.+.+.|...|.+. .....+.+||++|+
T Consensus 755 qrWQAllnf--nsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPltgmiEgsqeyn~klV~RLHkVlr 832 (1958)
T KOG0391|consen 755 QRWQALLNF--NSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLTGMIEGSQEYNHKLVIRLHKVLR 832 (1958)
T ss_pred HHHHHHhcc--chhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcchhhcccchhhchHHHHHHHHHhH
Confidence 999999999 999999999999999999999999999999998887766655552 12467899999999
Q ss_pred chhhheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhh
Q 039292 389 PFILRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKI 468 (520)
Q Consensus 389 ~~~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRki 468 (520)
||+|||+|.||.++||.|.|++++|.||..|+.+|++++.+-... .. +....-.+++|+||+||||
T Consensus 833 PfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TK-----et---------LkSGhfmsVlnilmqLrKv 898 (1958)
T KOG0391|consen 833 PFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTK-----ET---------LKSGHFMSVLNILMQLRKV 898 (1958)
T ss_pred HHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchh-----hH---------hhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988643211 01 1111334789999999999
Q ss_pred ccCccccccc
Q 039292 469 ANHPLLVRRI 478 (520)
Q Consensus 469 cnHP~L~~~~ 478 (520)
||||.||...
T Consensus 899 CNHPnLfEpR 908 (1958)
T KOG0391|consen 899 CNHPNLFEPR 908 (1958)
T ss_pred cCCCCcCCCC
Confidence 9999999753
No 4
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.5e-62 Score=507.58 Aligned_cols=295 Identities=33% Similarity=0.529 Sum_probs=247.3
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHH
Q 039292 158 GDEDSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWEREL 237 (520)
Q Consensus 158 ~~~~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 237 (520)
..+|..+...|.|||++||+|||.+++++ .||||+||||||||||+|+||+.+.+.....+|+|||||++++.||.+||
T Consensus 196 ~~vPg~I~~~Lf~yQreGV~WL~~L~~q~-~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~ 274 (923)
T KOG0387|consen 196 FKVPGFIWSKLFPYQREGVQWLWELYCQR-AGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEF 274 (923)
T ss_pred ccccHHHHHHhhHHHHHHHHHHHHHHhcc-CCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHH
Confidence 34677788899999999999999999998 46699999999999999999999988656779999999999999999999
Q ss_pred HHhcCCCeEEEecCCCchhhhHHHH------HHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcc
Q 039292 238 KKWCPSFSVLQYHGAGRTAYSRELS------SLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAH 311 (520)
Q Consensus 238 ~~~~p~~~v~~~~g~~~~~~~~~~~------~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH 311 (520)
.+|+|.++|.+|||........... .+.........+|+||||+.|+. ....+..+.|+++|+||+|
T Consensus 275 ~~w~p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~-------~~d~l~~~~W~y~ILDEGH 347 (923)
T KOG0387|consen 275 QTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI-------QGDDLLGILWDYVILDEGH 347 (923)
T ss_pred HHhCcceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc-------cCcccccccccEEEecCcc
Confidence 9999999999999987632211111 10111223456899999999987 4556788999999999999
Q ss_pred ccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcC---------------Cc
Q 039292 312 ALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNG---------------ED 376 (520)
Q Consensus 312 ~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~---------------~~ 376 (520)
+|+|++|+++.+++.+ ++.+||+||||||||++.|||+|++|+.|+.+|+...|...|... ..
T Consensus 348 ~IrNpns~islackki--~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~a 425 (923)
T KOG0387|consen 348 RIRNPNSKISLACKKI--RTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTA 425 (923)
T ss_pred cccCCccHHHHHHHhc--cccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999998887776431 12
Q ss_pred hHHHHHHHHhhcchhhheeHhHHhh-hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCCh
Q 039292 377 RDLIGRMKSILGPFILRRLKSDVMQ-QLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQ 455 (520)
Q Consensus 377 ~~~~~~L~~~l~~~~lRR~k~~v~~-~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (520)
+.....|+.+|.||+|||+|.+|.. .||.|.++|++|.||+.|+.+|..+++...-. ..-++ .
T Consensus 426 ykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~------~i~ng----------~ 489 (923)
T KOG0387|consen 426 YKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVN------KILNG----------K 489 (923)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHH------HHHcC----------C
Confidence 3556779999999999999999999 99999999999999999999999998753211 11111 1
Q ss_pred hHHHHHHHHHhhhccCccccccc
Q 039292 456 RQISNYFVQFRKIANHPLLVRRI 478 (520)
Q Consensus 456 ~~i~~~l~~LRkicnHP~L~~~~ 478 (520)
.+++.-+.-||+|||||.|+.+-
T Consensus 490 ~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 490 RNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred ccceechHHHHhhcCCcccccCc
Confidence 23445577899999999999884
No 5
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=6.3e-62 Score=525.80 Aligned_cols=319 Identities=34% Similarity=0.572 Sum_probs=270.2
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCe
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFS 245 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~ 245 (520)
..||+||++|++||+..|.++. .||||||||||||+|+|+||.++.+.....||+|||+|.|++.+|.+||..|+ ..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~-n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn 446 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRN-NCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMN 446 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcc-cceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhc
Confidence 4899999999999999999994 67999999999999999999999998889999999999999999999999999 999
Q ss_pred EEEecCCCchhhhHHHHHHhhcC--CCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHH
Q 039292 246 VLQYHGAGRTAYSRELSSLAKAG--LPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKN 323 (520)
Q Consensus 246 v~~~~g~~~~~~~~~~~~~~~~~--~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~ 323 (520)
+++|+|....+...+.-.+.... ..-.++++||||+++.+ +..+|..+.|.++++||||++||..|..+..
T Consensus 447 ~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~Lk-------Dk~~L~~i~w~~~~vDeahrLkN~~~~l~~~ 519 (1373)
T KOG0384|consen 447 VIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLK-------DKAELSKIPWRYLLVDEAHRLKNDESKLYES 519 (1373)
T ss_pred eeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhc-------cHhhhccCCcceeeecHHhhcCchHHHHHHH
Confidence 99999997655433333332222 22368999999999998 8999999999999999999999999999999
Q ss_pred HHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCCchHHHHHHHHhhcchhhheeHhHHhhhc
Q 039292 324 LMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGEDRDLIGRMKSILGPFILRRLKSDVMQQL 403 (520)
Q Consensus 324 l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~L 403 (520)
+..+ +..+|+++||||+||++.|||+|++||+|+.|..+..|...+ .......+..|+.+|.||||||.|+||.+.|
T Consensus 520 l~~f--~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~-~~~~e~~~~~L~~~L~P~~lRr~kkdveksl 596 (1373)
T KOG0384|consen 520 LNQF--KMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEF-DEETEEQVRKLQQILKPFLLRRLKKDVEKSL 596 (1373)
T ss_pred HHHh--cccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhh-cchhHHHHHHHHHHhhHHHHHHHHhhhccCC
Confidence 9988 899999999999999999999999999999999999998888 6677788999999999999999999999999
Q ss_pred CCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCcccccccCCChH
Q 039292 404 VPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHPLLVRRIYSDDD 483 (520)
Q Consensus 404 P~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP~L~~~~~~~~~ 483 (520)
|+|.|+++.|+||..|+++|++++++.-..+ .++..+ +...++|++|.||||||||||++++.....
T Consensus 597 p~k~E~IlrVels~lQk~yYk~ILtkN~~~L----tKG~~g---------~~~~lLNimmELkKccNHpyLi~gaee~~~ 663 (1373)
T KOG0384|consen 597 PPKEETILRVELSDLQKQYYKAILTKNFSAL----TKGAKG---------STPSLLNIMMELKKCCNHPYLIKGAEEKIL 663 (1373)
T ss_pred CCCcceEEEeehhHHHHHHHHHHHHhhHHHH----hccCCC---------CCchHHHHHHHHHHhcCCccccCcHHHHHH
Confidence 9999999999999999999999998654443 122221 124689999999999999999998633211
Q ss_pred --H------HHHHHhhCCCCCccccccHHHHHHHHhc
Q 039292 484 --V------VRFAKKLHPMGAFGFECTLERVIEELKN 512 (520)
Q Consensus 484 --~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 512 (520)
. ..+..++. ..|+.-.||.|+..|+.
T Consensus 664 ~~~~~~~~d~~L~~lI~---sSGKlVLLDKLL~rLk~ 697 (1373)
T KOG0384|consen 664 GDFRDKMRDEALQALIQ---SSGKLVLLDKLLPRLKE 697 (1373)
T ss_pred HhhhhcchHHHHHHHHH---hcCcEEeHHHHHHHHhc
Confidence 1 01112222 24455577777777765
No 6
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-58 Score=473.53 Aligned_cols=290 Identities=39% Similarity=0.665 Sum_probs=255.3
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHH
Q 039292 158 GDEDSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWEREL 237 (520)
Q Consensus 158 ~~~~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 237 (520)
..+|.-+..+|+.||+.|++||...+.+|.+| |||||||||||+|+|+++++|......+||+|||+|+++++||..||
T Consensus 558 V~qPkil~ctLKEYQlkGLnWLvnlYdqGiNG-ILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaqEi 636 (1185)
T KOG0388|consen 558 VPQPKILKCTLKEYQLKGLNWLVNLYDQGING-ILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQEI 636 (1185)
T ss_pred ccCchhhhhhhHHHhhccHHHHHHHHHccccc-eehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHHHH
Confidence 34678888999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCeEEEecCCCchhhh-HHHH-HHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC
Q 039292 238 KKWCPSFSVLQYHGAGRTAYS-RELS-SLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD 315 (520)
Q Consensus 238 ~~~~p~~~v~~~~g~~~~~~~-~~~~-~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn 315 (520)
.+|+|+++++.|.|+...+.. +.++ .-..-....+++|+||+|+++.. +...|..++|.++|+|||+.||.
T Consensus 637 srFlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVt-------Deky~qkvKWQYMILDEAQAIKS 709 (1185)
T KOG0388|consen 637 SRFLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVT-------DEKYLQKVKWQYMILDEAQAIKS 709 (1185)
T ss_pred HHhCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeec-------hHHHHHhhhhhheehhHHHHhhh
Confidence 999999999999998654321 1111 00112234579999999999987 88999999999999999999999
Q ss_pred cchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcC----------CchHHHHHHHH
Q 039292 316 KNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNG----------EDRDLIGRMKS 385 (520)
Q Consensus 316 ~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~----------~~~~~~~~L~~ 385 (520)
..|.+|+.+..+ +++.|++||||||||+..|||+||+|++|.+|.+.++|...|... -....+.+||.
T Consensus 710 SsS~RWKtLLsF--~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ 787 (1185)
T KOG0388|consen 710 SSSSRWKTLLSF--KCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHA 787 (1185)
T ss_pred hhhhHHHHHhhh--hccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHH
Confidence 999999999998 999999999999999999999999999999999988776665442 34678999999
Q ss_pred hhcchhhheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHH
Q 039292 386 ILGPFILRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQF 465 (520)
Q Consensus 386 ~l~~~~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~L 465 (520)
+|+||||||.|++|..+|-.|+++.++|.||-.|+.+|..+...+... .+.+++|+|
T Consensus 788 ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~-----------------------E~~~~vmQl 844 (1185)
T KOG0388|consen 788 ILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSM-----------------------EMENLVMQL 844 (1185)
T ss_pred HHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHH-----------------------HHHHHHHHH
Confidence 999999999999999999999999999999999999999887654321 244689999
Q ss_pred hhhccCcccccccCC
Q 039292 466 RKIANHPLLVRRIYS 480 (520)
Q Consensus 466 RkicnHP~L~~~~~~ 480 (520)
||+||||.|+.+...
T Consensus 845 rKVCNHPdLFer~e~ 859 (1185)
T KOG0388|consen 845 RKVCNHPDLFERLEP 859 (1185)
T ss_pred HHhcCChHHHhhcCC
Confidence 999999999987644
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=7.7e-57 Score=502.26 Aligned_cols=290 Identities=36% Similarity=0.662 Sum_probs=250.6
Q ss_pred CCCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 160 EDSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 160 ~~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
+|+.+..+|||||+.|++||+..+..+. ||||||+||||||+|+|+++.++....+..+|+|||||.+++.||.+||.+
T Consensus 162 qP~~i~~~Lr~YQleGlnWLi~l~~~g~-gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~k 240 (1033)
T PLN03142 162 QPSCIKGKMRDYQLAGLNWLIRLYENGI-NGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRR 240 (1033)
T ss_pred CChHhccchHHHHHHHHHHHHHHHhcCC-CEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHH
Confidence 5677778999999999999999888884 669999999999999999999987767788999999999999999999999
Q ss_pred hcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchH
Q 039292 240 WCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSY 319 (520)
Q Consensus 240 ~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~ 319 (520)
|+|.++++.|+|....+.......+ ....++|+||||+++.+ ....+..+.|++|||||||+|||..|.
T Consensus 241 w~p~l~v~~~~G~~~eR~~~~~~~~----~~~~~dVvITSYe~l~~-------e~~~L~k~~W~~VIvDEAHrIKN~~Sk 309 (1033)
T PLN03142 241 FCPVLRAVKFHGNPEERAHQREELL----VAGKFDVCVTSFEMAIK-------EKTALKRFSWRYIIIDEAHRIKNENSL 309 (1033)
T ss_pred HCCCCceEEEeCCHHHHHHHHHHHh----cccCCCcceecHHHHHH-------HHHHhccCCCCEEEEcCccccCCHHHH
Confidence 9999999999998654322211111 12368999999999987 677888999999999999999999999
Q ss_pred HHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcC---CchHHHHHHHHhhcchhhheeH
Q 039292 320 RWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNG---EDRDLIGRMKSILGPFILRRLK 396 (520)
Q Consensus 320 ~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~---~~~~~~~~L~~~l~~~~lRR~k 396 (520)
+++++..+ ++.+||+|||||++|++.|||++++||.|+.|++...|...|... .....+.+|+.+|+||++||+|
T Consensus 310 lskalr~L--~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~K 387 (1033)
T PLN03142 310 LSKTMRLF--STNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLK 387 (1033)
T ss_pred HHHHHHHh--hcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhH
Confidence 99999998 899999999999999999999999999999999988776665432 3456788999999999999999
Q ss_pred hHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCccccc
Q 039292 397 SDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHPLLVR 476 (520)
Q Consensus 397 ~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP~L~~ 476 (520)
++|...||++.+.+++|+||+.|+++|+.++......+.. ......+++++++||+|||||+|+.
T Consensus 388 sdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~---------------g~~~~~LlnilmqLRk~cnHP~L~~ 452 (1033)
T PLN03142 388 SDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNA---------------GGERKRLLNIAMQLRKCCNHPYLFQ 452 (1033)
T ss_pred HHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhc---------------cccHHHHHHHHHHHHHHhCCHHhhh
Confidence 9999999999999999999999999999988764433210 1123468999999999999999987
Q ss_pred cc
Q 039292 477 RI 478 (520)
Q Consensus 477 ~~ 478 (520)
..
T Consensus 453 ~~ 454 (1033)
T PLN03142 453 GA 454 (1033)
T ss_pred cc
Confidence 64
No 8
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=3.3e-57 Score=481.05 Aligned_cols=288 Identities=36% Similarity=0.628 Sum_probs=244.3
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSF 244 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~ 244 (520)
.++|++||+.|+.||..++.++.+| |||||||||||+|+|+++.++.......||+|||||.+++.||..||.+|.|++
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNG-ILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv 470 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNG-ILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSV 470 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCccc-ccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccce
Confidence 4689999999999999999999888 999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHH
Q 039292 245 SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNL 324 (520)
Q Consensus 245 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l 324 (520)
..+.|.|....+....-. ... ++|+|++|||+.+.+ +...|..+.|.++||||+|++||..++....+
T Consensus 471 ~~i~YkGtp~~R~~l~~q--ir~---gKFnVLlTtyEyiik-------dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L 538 (1157)
T KOG0386|consen 471 QKIQYKGTPQQRSGLTKQ--QRH---GKFNVLLTTYEYIIK-------DKALLSKISWKYMIIDEGHRMKNAICKLTDTL 538 (1157)
T ss_pred eeeeeeCCHHHHhhHHHH--Hhc---ccceeeeeeHHHhcC-------CHHHHhccCCcceeecccccccchhhHHHHHh
Confidence 999999986544322111 111 479999999999988 89999999999999999999999999999999
Q ss_pred HHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHH---HHH-hhcCCc---------hHHHHHHHHhhcchh
Q 039292 325 MSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVD---LKK-LLNGED---------RDLIGRMKSILGPFI 391 (520)
Q Consensus 325 ~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~---~~~-~~~~~~---------~~~~~~L~~~l~~~~ 391 (520)
.. ...+.+|++|||||+||++.|||+||+|+.|++|.+...| |+. |.+.++ --.+.+||++|.||+
T Consensus 539 ~t-~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFl 617 (1157)
T KOG0386|consen 539 NT-HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFL 617 (1157)
T ss_pred hc-cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHH
Confidence 86 3389999999999999999999999999999999887543 333 222221 234789999999999
Q ss_pred hheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccC
Q 039292 392 LRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANH 471 (520)
Q Consensus 392 lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnH 471 (520)
|||.|++|..+||.|++.++.|.||..|+.+|..+.+.-.-. . ++ ..+....+.+.|.+|+|||||||
T Consensus 618 LRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~------~--d~----~~g~~g~k~L~N~imqLRKiCNH 685 (1157)
T KOG0386|consen 618 LRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLL------K--DT----AKGKKGYKPLFNTIMQLRKLCNH 685 (1157)
T ss_pred HHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCC------c--Cc----hhccccchhhhhHhHHHHHhcCC
Confidence 999999999999999999999999999999999876431110 0 00 11222345789999999999999
Q ss_pred ccccccc
Q 039292 472 PLLVRRI 478 (520)
Q Consensus 472 P~L~~~~ 478 (520)
|+|+...
T Consensus 686 P~lf~~v 692 (1157)
T KOG0386|consen 686 PYLFANV 692 (1157)
T ss_pred chhhhhh
Confidence 9999443
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.8e-55 Score=473.60 Aligned_cols=326 Identities=30% Similarity=0.492 Sum_probs=261.3
Q ss_pred CCCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC------CCCCEEEEeCCcchhhH
Q 039292 160 EDSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN------DPGPHLIVCPASVLENW 233 (520)
Q Consensus 160 ~~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~------~~~~~LIV~P~sll~~W 233 (520)
+|-.+...||.||.+||+|+....+.+..| ||||+||||||+|+|++++.-...++ ..-|.|||||.++..+|
T Consensus 968 Ip~pI~a~LRkYQqEGVnWLaFLnky~LHG-ILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLtGHW 1046 (1549)
T KOG0392|consen 968 IPVPISAKLRKYQQEGVNWLAFLNKYKLHG-ILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLTGHW 1046 (1549)
T ss_pred cccchhHHHHHHHHhccHHHHHHHHhcccc-eeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhhhHH
Confidence 344566799999999999999999999888 99999999999999999875433221 34689999999999999
Q ss_pred HHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcccc
Q 039292 234 ERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHAL 313 (520)
Q Consensus 234 ~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~i 313 (520)
..|+.+|+|.++|+.|.|....+...+-. ..+.+|+||+|+.+++ +...|..+.|.|+|+||+|-|
T Consensus 1047 ~~E~~kf~pfL~v~~yvg~p~~r~~lR~q-------~~~~~iiVtSYDv~Rn-------D~d~l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1047 KSEVKKFFPFLKVLQYVGPPAERRELRDQ-------YKNANIIVTSYDVVRN-------DVDYLIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred HHHHHHhcchhhhhhhcCChHHHHHHHhh-------ccccceEEeeHHHHHH-------HHHHHHhcccceEEecCccee
Confidence 99999999999999999986544322211 1246999999999999 889999999999999999999
Q ss_pred CCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCC---------------chH
Q 039292 314 KDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGE---------------DRD 378 (520)
Q Consensus 314 kn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~---------------~~~ 378 (520)
||..++.+++++.+ .+.||++|||||||||+.|||++++||+|+++|+...|..+|..+. ..-
T Consensus 1113 kN~ktkl~kavkqL--~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~l 1190 (1549)
T KOG0392|consen 1113 KNSKTKLTKAVKQL--RANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVL 1190 (1549)
T ss_pred cchHHHHHHHHHHH--hhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHH
Confidence 99999999999999 8999999999999999999999999999999999999988876521 123
Q ss_pred HHHHHHHhhcchhhheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHH
Q 039292 379 LIGRMKSILGPFILRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQI 458 (520)
Q Consensus 379 ~~~~L~~~l~~~~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 458 (520)
+++.||+.+=||||||+|.||.++||||+.+-.+|+|||.|+++|+.+..+...... ...+++..+ .+. ...++
T Consensus 1191 AleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~----~~~d~~~~S-~gt-~~~Hv 1264 (1549)
T KOG0392|consen 1191 ALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVS----SQIDGGEES-LGT-DKTHV 1264 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccc----cccccchhc-cCc-chHHH
Confidence 578899999999999999999999999999999999999999999998876222111 111111111 111 26789
Q ss_pred HHHHHHHhhhccCcccccccCCChHHHHH-------HHhhCCCCCccccccHHHHHHH
Q 039292 459 SNYFVQFRKIANHPLLVRRIYSDDDVVRF-------AKKLHPMGAFGFECTLERVIEE 509 (520)
Q Consensus 459 ~~~l~~LRkicnHP~L~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~ 509 (520)
+++|..|||.||||.|+... ...++..+ ...+|+....++...|..++.+
T Consensus 1265 FqaLqYlrKLcnHpaLvlt~-~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~e 1321 (1549)
T KOG0392|consen 1265 FQALQYLRKLCNHPALVLTP-VHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSE 1321 (1549)
T ss_pred HHHHHHHHHhcCCcceeeCC-CcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHH
Confidence 99999999999999999864 22233332 2344444444444455555543
No 10
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.1e-53 Score=446.34 Aligned_cols=306 Identities=25% Similarity=0.316 Sum_probs=245.0
Q ss_pred ccCCCCCCCCccCCcHHHHHHHHHHHHHHhc--------CCCceEEeCCCCCCHHHHHHHHHHHH-HHhCCCCCCEEEEe
Q 039292 155 DACGDEDSDFQPVLKPYQLVGVNFLLLLYRK--------GIAGAILADEMGLGKTIQAITYLMLL-KHLNNDPGPHLIVC 225 (520)
Q Consensus 155 ~~~~~~~~~~~~~Lr~~Q~~gv~~l~~~~~~--------~~~g~ILademGlGKTi~aia~l~~l-~~~~~~~~~~LIV~ 225 (520)
.....++..+...|+|||..||+|||...+. ...||||||.||||||+|+|+|++.+ ........++||||
T Consensus 656 e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~ 735 (1567)
T KOG1015|consen 656 EPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVC 735 (1567)
T ss_pred cchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEc
Confidence 3344567888899999999999999975543 22689999999999999999999765 34455678999999
Q ss_pred CCcchhhHHHHHHHhcCCC------eEEEecCCCc-hhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccc------
Q 039292 226 PASVLENWERELKKWCPSF------SVLQYHGAGR-TAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKD------ 292 (520)
Q Consensus 226 P~sll~~W~~E~~~~~p~~------~v~~~~g~~~-~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~------ 292 (520)
|.+++.||.+||.+|.+++ .|..+....+ ..+...+..|...+ .|+|+.|++|+........
T Consensus 736 PlNt~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~g-----gVmIiGYdmyRnLa~gr~vk~rk~k 810 (1567)
T KOG1015|consen 736 PLNTALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDG-----GVMIIGYDMYRNLAQGRNVKSRKLK 810 (1567)
T ss_pred chHHHHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcC-----CEEEEehHHHHHHhcccchhhhHHH
Confidence 9999999999999999863 3333333333 33444566666544 9999999999986543221
Q ss_pred --hHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHH
Q 039292 293 --DRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKK 370 (520)
Q Consensus 293 --~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~ 370 (520)
....+..-.+|+|||||||.|||..|.+++++..+ ++.+||+|||||+||||.|+|+|++|+.|+++|+..+|.++
T Consensus 811 e~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~i--rtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNR 888 (1567)
T KOG1015|consen 811 EIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSI--RTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNR 888 (1567)
T ss_pred HHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHH--HhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHh
Confidence 22345555799999999999999999999999999 89999999999999999999999999999999999999999
Q ss_pred hhcCCch---------------HHHHHHHHhhcchhhheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 039292 371 LLNGEDR---------------DLIGRMKSILGPFILRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSR 435 (520)
Q Consensus 371 ~~~~~~~---------------~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~ 435 (520)
|.|.... .....|+.+|..|+.|+....+...||||+++||.|.||+.|..+|..+++ +...
T Consensus 889 FvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~-h~~~-- 965 (1567)
T KOG1015|consen 889 FVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLD-HLTG-- 965 (1567)
T ss_pred hcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHh-hccc--
Confidence 9885321 234569999999999999999999999999999999999999999999987 3211
Q ss_pred HHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCccccccc
Q 039292 436 ARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHPLLVRRI 478 (520)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP~L~~~~ 478 (520)
.+ .....+..-..+++..+.-|++|++||+.+.-.
T Consensus 966 -------~G-~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~ 1000 (1567)
T KOG1015|consen 966 -------VG-NDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLD 1000 (1567)
T ss_pred -------cC-CccccccchhhhHHHHHHHHHHHhcCCCceeec
Confidence 11 111112223457899999999999999998654
No 11
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=4.6e-48 Score=388.42 Aligned_cols=284 Identities=35% Similarity=0.572 Sum_probs=221.2
Q ss_pred HHHHHHHHHHHHH--------hcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCC--CCEEEEeCCcchhhHHHHHHHh
Q 039292 171 YQLVGVNFLLLLY--------RKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDP--GPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 171 ~Q~~gv~~l~~~~--------~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~--~~~LIV~P~sll~~W~~E~~~~ 240 (520)
||+.||+||+..+ ....+||||||+||+|||+++++++..+....... +++|||||.+++.+|..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 44457899999999999999999998776543333 3699999999999999999999
Q ss_pred c-C-CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch
Q 039292 241 C-P-SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 241 ~-p-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
+ | .++++++.|..... .........++++|+||+.+.. .........+...+|++||+||+|+++|..+
T Consensus 81 ~~~~~~~v~~~~~~~~~~-------~~~~~~~~~~~vvi~ty~~~~~--~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s 151 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERR-------RLSKNQLPKYDVVITTYETLRK--ARKKKDKEDLKQIKWDRVIVDEAHRLKNKDS 151 (299)
T ss_dssp SGT-TS-EEEESSSCHHH-------HTTSSSCCCSSEEEEEHHHHH----TSTHTTHHHHTSEEEEEEETTGGGGTTTTS
T ss_pred cccccccccccccccccc-------cccccccccceeeecccccccc--ccccccccccccccceeEEEecccccccccc
Confidence 9 4 68899998887111 1112233468999999999981 0111145667778899999999999999999
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhh---cCCchHHHHHHHHhhcchhhhee
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLL---NGEDRDLIGRMKSILGPFILRRL 395 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~---~~~~~~~~~~L~~~l~~~~lRR~ 395 (520)
.+++++..+ .+.++|+|||||++|++.|+|++++||.|+.++....|...+. .........+|+.+++++++||+
T Consensus 152 ~~~~~l~~l--~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~ 229 (299)
T PF00176_consen 152 KRYKALRKL--RARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLRELLSEFMIRRT 229 (299)
T ss_dssp HHHHHHHCC--CECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHC
T ss_pred ccccccccc--ccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccccccccccchhhhhhh
Confidence 999999997 7999999999999999999999999999999998777766653 34456778899999999999999
Q ss_pred HhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCcccc
Q 039292 396 KSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHPLLV 475 (520)
Q Consensus 396 k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP~L~ 475 (520)
+.++...||++.++++.|+||+.|+.+|+.+....+..+.... .........+++.+++|||+||||+|+
T Consensus 230 ~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 230 KKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQSS----------RKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp GGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT-T------------TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred cccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhhc----------ccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 9999888999999999999999999999988776543321111 011123457899999999999999986
No 12
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=2.4e-47 Score=379.05 Aligned_cols=298 Identities=29% Similarity=0.469 Sum_probs=243.2
Q ss_pred CCCCCCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHH
Q 039292 157 CGDEDSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERE 236 (520)
Q Consensus 157 ~~~~~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E 236 (520)
...+|.++...|-|||++|+.|+.......++|||||||||+|||||+|+++.. .....|+|||||.-.+.||..|
T Consensus 174 ~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~~ra~tLVvaP~VAlmQW~nE 249 (791)
T KOG1002|consen 174 RAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EVDRAPTLVVAPTVALMQWKNE 249 (791)
T ss_pred cccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----ccccCCeeEEccHHHHHHHHHH
Confidence 345788999999999999999999888888889999999999999999998864 4466789999999999999999
Q ss_pred HHHhc-CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcc----------ccchHHHHhhcCccEE
Q 039292 237 LKKWC-PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQ----------QKDDRKILKRWRWSCV 305 (520)
Q Consensus 237 ~~~~~-p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~----------~~~~~~~l~~~~~~~v 305 (520)
|.++. ..+++++|+|..+......+. +|+||+|||..+.+.... .....+.|+.+.|..|
T Consensus 250 I~~~T~gslkv~~YhG~~R~~nikel~---------~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~Ri 320 (791)
T KOG1002|consen 250 IERHTSGSLKVYIYHGAKRDKNIKELM---------NYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRI 320 (791)
T ss_pred HHHhccCceEEEEEecccccCCHHHhh---------cCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeee
Confidence 99997 468999999999887666654 589999999998764332 1123467899999999
Q ss_pred EEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChH--------------------
Q 039292 306 LMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATED-------------------- 365 (520)
Q Consensus 306 IiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~-------------------- 365 (520)
|+||||.||+..|.+.+++..+ .+.+||+|||||+||.+.|||++++||+.+.|..+.
T Consensus 321 IlDEAH~IK~R~snTArAV~~L--~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~ 398 (791)
T KOG1002|consen 321 ILDEAHNIKDRQSNTARAVFAL--ETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCD 398 (791)
T ss_pred ehhhhcccccccccHHHHHHhh--HhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCC
Confidence 9999999999999999999998 899999999999999999999999999988765421
Q ss_pred ----------HHHHHhhc---------CCchHHHHHHHHhhcchhhheeHhHHhh--hcCCcEEEEEEeCCCHHHHHHHH
Q 039292 366 ----------VDLKKLLN---------GEDRDLIGRMKSILGPFILRRLKSDVMQ--QLVPKIQWVEYVTMERPQEDAYR 424 (520)
Q Consensus 366 ----------~~~~~~~~---------~~~~~~~~~L~~~l~~~~lRR~k~~v~~--~LP~k~e~~v~v~ms~~Q~~~Y~ 424 (520)
-|++.+.- +.....+...+.+|..+||||+|=.-+. .|||.+..+..=-++..+..+|+
T Consensus 399 ~c~h~~m~h~~~~n~~mlk~IqkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~Ye 478 (791)
T KOG1002|consen 399 HCSHNIMQHTCFFNHFMLKPIQKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYE 478 (791)
T ss_pred cccchhhhhhhhhcccccccchhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHH
Confidence 01111110 1223456678999999999999976544 38999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCcccccc
Q 039292 425 VAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHPLLVRR 477 (520)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP~L~~~ 477 (520)
.+.......+......+.. .....+|+.++++|||++.||+||-.
T Consensus 479 SLY~dSkrkfntyieeGvv--------lNNYAnIF~LitRmRQ~aDHP~LVl~ 523 (791)
T KOG1002|consen 479 SLYKDSKRKFNTYIEEGVV--------LNNYANIFTLITRMRQAADHPDLVLY 523 (791)
T ss_pred HHHHhhHHhhhhHHhhhhh--------hhhHHHHHHHHHHHHHhccCcceeee
Confidence 9987665544444333221 12456899999999999999999965
No 13
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=6.2e-47 Score=405.21 Aligned_cols=290 Identities=27% Similarity=0.432 Sum_probs=238.2
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHHHhc-----CCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCC----CCEEEEeCCc
Q 039292 158 GDEDSDFQPVLKPYQLVGVNFLLLLYRK-----GIAGAILADEMGLGKTIQAITYLMLLKHLNNDP----GPHLIVCPAS 228 (520)
Q Consensus 158 ~~~~~~~~~~Lr~~Q~~gv~~l~~~~~~-----~~~g~ILademGlGKTi~aia~l~~l~~~~~~~----~~~LIV~P~s 228 (520)
..++|.+...|||||.+|++||+..... +.+|||+||+||+|||+|.|+||..+......+ ...|||||.+
T Consensus 229 v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~s 308 (776)
T KOG0390|consen 229 VVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSS 308 (776)
T ss_pred EEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHH
Confidence 3478899999999999999999964432 457999999999999999999999888766553 3459999999
Q ss_pred chhhHHHHHHHhcC--CCeEEEecCCCchhhhHHHHHHhh-cCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEE
Q 039292 229 VLENWERELKKWCP--SFSVLQYHGAGRTAYSRELSSLAK-AGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCV 305 (520)
Q Consensus 229 ll~~W~~E~~~~~p--~~~v~~~~g~~~~~~~~~~~~~~~-~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~v 305 (520)
++.||.+||.+|.. .+..+.+.|..... .....++.. ....-..-|++.+|++++. ....+....++++
T Consensus 309 Lv~nWkkEF~KWl~~~~i~~l~~~~~~~~~-w~~~~sil~~~~~~~~~~vli~sye~~~~-------~~~~il~~~~glL 380 (776)
T KOG0390|consen 309 LVNNWKKEFGKWLGNHRINPLDFYSTKKSS-WIKLKSILFLGYKQFTTPVLIISYETASD-------YCRKILLIRPGLL 380 (776)
T ss_pred HHHHHHHHHHHhccccccceeeeecccchh-hhhhHHHHHhhhhheeEEEEeccHHHHHH-------HHHHHhcCCCCeE
Confidence 99999999999985 56667777766541 122222221 1122245799999999987 6677888899999
Q ss_pred EEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCC----c-----
Q 039292 306 LMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGE----D----- 376 (520)
Q Consensus 306 IiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~----~----- 376 (520)
|+||+|++||..|.+++++..+ ++++|++|||||+||++.|+|++|+|++|+++++...|.+.+.... +
T Consensus 381 VcDEGHrlkN~~s~~~kaL~~l--~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~ 458 (776)
T KOG0390|consen 381 VCDEGHRLKNSDSLTLKALSSL--KTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASE 458 (776)
T ss_pred EECCCCCccchhhHHHHHHHhc--CCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcch
Confidence 9999999999999999999999 9999999999999999999999999999999999988887765421 1
Q ss_pred -----hHHHHHHHHhhcchhhheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhc
Q 039292 377 -----RDLIGRMKSILGPFILRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVG 451 (520)
Q Consensus 377 -----~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (520)
.+.++.|+.+...|++||+-+.+.+.||++.++++.|.+|+.|+.+|..+.+.. ... ..
T Consensus 459 e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~~--~~------------- 522 (776)
T KOG0390|consen 459 EDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KMR--TL------------- 522 (776)
T ss_pred hhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hhh--hh-------------
Confidence 234788999999999999998899999999999999999999999999988753 110 00
Q ss_pred CCChhHHHHHHHHHhhhccCccccc
Q 039292 452 VLPQRQISNYFVQFRKIANHPLLVR 476 (520)
Q Consensus 452 ~~~~~~i~~~l~~LRkicnHP~L~~ 476 (520)
....+..++.|.++||||.|+.
T Consensus 523 ---~~~~l~~~~~L~k~cnhP~L~~ 544 (776)
T KOG0390|consen 523 ---KGYALELITKLKKLCNHPSLLL 544 (776)
T ss_pred ---hcchhhHHHHHHHHhcCHHhhc
Confidence 0014566889999999999996
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.8e-47 Score=389.50 Aligned_cols=311 Identities=25% Similarity=0.421 Sum_probs=247.7
Q ss_pred CCCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC-------CCCCCEEEEeCCcchhh
Q 039292 160 EDSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN-------NDPGPHLIVCPASVLEN 232 (520)
Q Consensus 160 ~~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~-------~~~~~~LIV~P~sll~~ 232 (520)
.|.++...|.|||+.|++||.....+...||||||+||+|||+++|+++..-+... ....++|||||.+++.|
T Consensus 318 ~P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~q 397 (901)
T KOG4439|consen 318 TPDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQ 397 (901)
T ss_pred CCCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHH
Confidence 46678889999999999999988888778899999999999999999986543321 12336999999999999
Q ss_pred HHHHHHHhc--CCCeEEEecCCCc-hhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhc---cccchHHHHhhcCccEEE
Q 039292 233 WERELKKWC--PSFSVLQYHGAGR-TAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSV---QQKDDRKILKRWRWSCVL 306 (520)
Q Consensus 233 W~~E~~~~~--p~~~v~~~~g~~~-~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~---~~~~~~~~l~~~~~~~vI 306 (520)
|..|+..-. ..+.|++|||.++ ....+.+. .|+||||||..+.+... ....+...+..+.|.+||
T Consensus 398 W~~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~---------~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVI 468 (901)
T KOG4439|consen 398 WEAEVARRLEQNALSVYLYHGPNKREISAKELR---------KYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVI 468 (901)
T ss_pred HHHHHHHHHhhcceEEEEecCCccccCCHHHHh---------hcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhh
Confidence 999998765 3589999999984 33333333 48999999998876211 122355678999999999
Q ss_pred EeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCCchHHHHHHHHh
Q 039292 307 MDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGEDRDLIGRMKSI 386 (520)
Q Consensus 307 iDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 386 (520)
+||||.|||.+++.+.++..+ .+..|||||||||||++-|+|+|+.||+...|++...|...+.+ .......+|.-+
T Consensus 469 LDEAH~IrN~~tq~S~AVC~L--~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~-~s~~g~~rlnll 545 (901)
T KOG4439|consen 469 LDEAHNIRNSNTQCSKAVCKL--SAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDN-MSKGGANRLNLL 545 (901)
T ss_pred hhhhhhhcccchhHHHHHHHH--hhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccC-ccccchhhhhhh
Confidence 999999999999999999999 79999999999999999999999999999999998876665554 344556788889
Q ss_pred hcchhhheeHhHHhh-----hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhh----hcccchhh---------
Q 039292 387 LGPFILRRLKSDVMQ-----QLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAK----LSDADLAT--------- 448 (520)
Q Consensus 387 l~~~~lRR~k~~v~~-----~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~----~~~~~~~~--------- 448 (520)
.++.||||||..+.. .||.+...++.++|+..+...|.-++...+.++...+.. ..+++..+
T Consensus 546 ~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~ 625 (901)
T KOG4439|consen 546 TKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHD 625 (901)
T ss_pred hhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccc
Confidence 999999999998866 799999999999999999999998887766655442211 11111100
Q ss_pred ---------------hhcCCChhHHHHHHHHHhhhccCcccccccCCCh
Q 039292 449 ---------------IVGVLPQRQISNYFVQFRKIANHPLLVRRIYSDD 482 (520)
Q Consensus 449 ---------------~~~~~~~~~i~~~l~~LRkicnHP~L~~~~~~~~ 482 (520)
-.......+|+..|++|||+||||.+++...+.+
T Consensus 626 e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~ 674 (901)
T KOG4439|consen 626 EFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPE 674 (901)
T ss_pred cccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcchhccccCHH
Confidence 0001122468999999999999999988775543
No 15
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=2.4e-44 Score=371.87 Aligned_cols=300 Identities=27% Similarity=0.385 Sum_probs=235.9
Q ss_pred CCCCCCCccCCcHHHHHHHHHHHHHH-------hc-CCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc
Q 039292 158 GDEDSDFQPVLKPYQLVGVNFLLLLY-------RK-GIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV 229 (520)
Q Consensus 158 ~~~~~~~~~~Lr~~Q~~gv~~l~~~~-------~~-~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl 229 (520)
....+.+...|+|||+-||+||+... .+ ...||||||.||||||+|+|+|+..+++ ...++++|+|+|.++
T Consensus 245 iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflR-hT~AKtVL~ivPiNT 323 (1387)
T KOG1016|consen 245 IFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLR-HTKAKTVLVIVPINT 323 (1387)
T ss_pred eeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhh-cCccceEEEEEehHH
Confidence 34567888999999999999997422 11 2258999999999999999999987765 778899999999999
Q ss_pred hhhHHHHHHHhcCC-----------CeEEEecCCCch--hhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc-----
Q 039292 230 LENWERELKKWCPS-----------FSVLQYHGAGRT--AYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK----- 291 (520)
Q Consensus 230 l~~W~~E~~~~~p~-----------~~v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~----- 291 (520)
+.||..||..|.|. +.|.+++...+. .+...+..|.. ...|+++.|++|+-......
T Consensus 324 lQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~-----~GGVlLvGYemfRLL~lk~~~~~gr 398 (1387)
T KOG1016|consen 324 LQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQ-----TGGVLLVGYEMFRLLILKTLPKKGR 398 (1387)
T ss_pred HHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhc-----cCCEEEehHHHHHHHHHhcccccCC
Confidence 99999999999975 456666544332 22233344433 45999999999975322100
Q ss_pred --------------------------chHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCC
Q 039292 292 --------------------------DDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQND 345 (520)
Q Consensus 292 --------------------------~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~ 345 (520)
...+.|-.-.+|+|||||+|+|||..+.++.++..+ ++++||+|||-|+|||
T Consensus 399 pkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~I--rtrRRiVLTGYPLQNN 476 (1387)
T KOG1016|consen 399 PKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAI--RTRRRIVLTGYPLQNN 476 (1387)
T ss_pred ccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHh--hhceeEEEeccccccc
Confidence 012234455789999999999999999999999999 8999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHhhcCC-----------c----hHHHHHHHHhhcchhhheeHhHHhhhcCCcEEEE
Q 039292 346 LHELWSLLEFMMPDLFATEDVDLKKLLNGE-----------D----RDLIGRMKSILGPFILRRLKSDVMQQLVPKIQWV 410 (520)
Q Consensus 346 ~~el~~ll~fl~p~~~~~~~~~~~~~~~~~-----------~----~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~e~~ 410 (520)
+-|+|+|++|++|+++|+...|.+.|.... + +-....|+.+|..|+.||+...+..-||.|.|+|
T Consensus 477 LlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyV 556 (1387)
T KOG1016|consen 477 LLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYV 556 (1387)
T ss_pred hHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceE
Confidence 999999999999999999999888776421 1 1234569999999999999999988999999999
Q ss_pred EEeCCCHHHHHHHHHHHH-HHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCcccccccCC
Q 039292 411 EYVTMERPQEDAYRVAIE-EYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHPLLVRRIYS 480 (520)
Q Consensus 411 v~v~ms~~Q~~~Y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP~L~~~~~~ 480 (520)
+.|.||..|+++|+.++. .++... .. +..+. +-+.++.-+.||+|||.++.....
T Consensus 557 iLvr~s~iQR~LY~~Fm~d~~r~~~--------~~---~~~~~----NPLkAF~vCcKIWNHPDVLY~~l~ 612 (1387)
T KOG1016|consen 557 ILVRKSQIQRQLYRNFMLDAKREIA--------AN---NDAVF----NPLKAFSVCCKIWNHPDVLYRLLE 612 (1387)
T ss_pred EEEeHHHHHHHHHHHHHHHHHHhhc--------cc---ccccc----ChHHHHHHHHHhcCChHHHHHHHH
Confidence 999999999999999884 333321 01 11111 346678889999999999876544
No 16
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=7.8e-42 Score=363.18 Aligned_cols=288 Identities=36% Similarity=0.594 Sum_probs=251.8
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCe
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFS 245 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~ 245 (520)
..|.+||.+|++|+...+..+.. +|||||||+|||++++.|+..+.......+|.|+++|.+++.+|.+++..|+|++.
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~-~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~~wap~~~ 372 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVD-AILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWEREFELWAPSFY 372 (696)
T ss_pred ccccccchhhhhhhhcccccCCC-cccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCchhccCCCcc
Confidence 68999999999999999999965 59999999999999999999998877788999999999999999999999999999
Q ss_pred EEEecCCCchhhhHHHHHHhhc---------------CCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCc
Q 039292 246 VLQYHGAGRTAYSRELSSLAKA---------------GLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEA 310 (520)
Q Consensus 246 v~~~~g~~~~~~~~~~~~~~~~---------------~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEa 310 (520)
++.|.|....+.......+... .....+.|.+++|++... +...+..+.|.++|+||+
T Consensus 373 vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~-------~~~il~~v~w~~livde~ 445 (696)
T KOG0383|consen 373 VVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEI-------DQSILFSVQWGLLIVDEA 445 (696)
T ss_pred cccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhccc-------CHHHHhhhhcceeEeech
Confidence 9999998754322221111110 112357899999999987 888999999999999999
Q ss_pred cccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCCchHHHHHHHHhhcch
Q 039292 311 HALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGEDRDLIGRMKSILGPF 390 (520)
Q Consensus 311 H~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~ 390 (520)
|+++|..|..+..+... ...++++|||||.+|++.+|+++|+|+.|+.|....+|...|..-...+.+..|+.++.|+
T Consensus 446 ~rlkn~~s~~f~~l~~~--~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~l~~p~ 523 (696)
T KOG0383|consen 446 HRLKNKQSKRFRVLTAY--PIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHLLLCPH 523 (696)
T ss_pred hhcccchhhhhhhcccc--ccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhccccCch
Confidence 99999999999998877 8899999999999999999999999999999999999999888888889999999999999
Q ss_pred hhheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhcc
Q 039292 391 ILRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIAN 470 (520)
Q Consensus 391 ~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicn 470 (520)
|+||.|.||++.+|+|++-++.+.|++.|+++|+.++...-..+.+ +...-.++|++|+|||+||
T Consensus 524 ~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~---------------~~~~~s~~n~~mel~K~~~ 588 (696)
T KOG0383|consen 524 MLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQGLLA---------------GVHQYSLLNIVMELRKQCN 588 (696)
T ss_pred hhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChHHHhh---------------cchhHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999988754333211 1133467899999999999
Q ss_pred Cccccccc
Q 039292 471 HPLLVRRI 478 (520)
Q Consensus 471 HP~L~~~~ 478 (520)
||||+...
T Consensus 589 hpy~~~~~ 596 (696)
T KOG0383|consen 589 HPYLSPLE 596 (696)
T ss_pred CcccCccc
Confidence 99999873
No 17
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=8.5e-39 Score=366.23 Aligned_cols=306 Identities=40% Similarity=0.599 Sum_probs=241.0
Q ss_pred CCCccCCcHHHHHHHHHHH-HHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCC-CCCEEEEeCCcchhhHHHHHHH
Q 039292 162 SDFQPVLKPYQLVGVNFLL-LLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNND-PGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 162 ~~~~~~Lr~~Q~~gv~~l~-~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~-~~~~LIV~P~sll~~W~~E~~~ 239 (520)
..+...|+|||..|++||. .....+ .||||||+||+|||+|+|+++..+...... .+|+|||||.+++.||.+|+.+
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~-~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k 411 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNL-LGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEK 411 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhcc-CCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhh
Confidence 4556789999999999999 666666 466999999999999999999875554444 5899999999999999999999
Q ss_pred hcCCCe-EEEecCCCch--hhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc
Q 039292 240 WCPSFS-VLQYHGAGRT--AYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK 316 (520)
Q Consensus 240 ~~p~~~-v~~~~g~~~~--~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~ 316 (520)
|.|.++ +..++|.... .....+..+........+++++|||+.+.... .+...+....|+++|+||||+|||.
T Consensus 412 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~----~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 412 FAPDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL----VDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred hCccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh----hhHHHHhhceeeeeehhhHHHHhhh
Confidence 999999 9999998752 11222222222111123799999999998743 2567789999999999999999999
Q ss_pred chHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHH-HhCCCCCCCh-HHHHHHhhcC----Cc-------hHHHHHH
Q 039292 317 NSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLE-FMMPDLFATE-DVDLKKLLNG----ED-------RDLIGRM 383 (520)
Q Consensus 317 ~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~-fl~p~~~~~~-~~~~~~~~~~----~~-------~~~~~~L 383 (520)
.+..++++..+ ++.++++|||||++|++.|||++++ |++|+.++.. ..|...|... .. ...+..|
T Consensus 488 ~s~~~~~l~~~--~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l 565 (866)
T COG0553 488 QSSEGKALQFL--KALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELL 565 (866)
T ss_pred hhHHHHHHHHH--hhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHH
Confidence 99999999977 8999999999999999999999999 9999999955 4444444332 11 2345558
Q ss_pred HHhhcchhhheeHhH--HhhhcCCcEEEEEEeCCCHHHHHHHHHHHH---HHHHHHHHHHhhhcccchhhhhcCCChhHH
Q 039292 384 KSILGPFILRRLKSD--VMQQLVPKIQWVEYVTMERPQEDAYRVAIE---EYRAVSRARIAKLSDADLATIVGVLPQRQI 458 (520)
Q Consensus 384 ~~~l~~~~lRR~k~~--v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 458 (520)
+.+++||++||+|.+ +...||++.+.++.|.|++.|+.+|..... .....+.......... . ..+. ....+
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~-~~~~~ 641 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDE--N-RIGD-SELNI 641 (866)
T ss_pred HHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--c-cccc-hhhHH
Confidence 999999999999999 888999999999999999999999999988 4333332221111110 0 0000 24578
Q ss_pred HHHHHHHhhhccCccccccc
Q 039292 459 SNYFVQFRKIANHPLLVRRI 478 (520)
Q Consensus 459 ~~~l~~LRkicnHP~L~~~~ 478 (520)
++.+++||++||||.|+...
T Consensus 642 l~~~~~lr~~~~~p~l~~~~ 661 (866)
T COG0553 642 LALLTRLRQICNHPALVDEG 661 (866)
T ss_pred HHHHHHHHHhccCccccccc
Confidence 99999999999999999875
No 18
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=9.8e-36 Score=296.83 Aligned_cols=242 Identities=30% Similarity=0.430 Sum_probs=198.0
Q ss_pred CCCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 160 EDSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 160 ~~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
.++.+...|.|||++||.|.+. +| +.||||||||||||+|||+++.+.+ ..+|.|||||.++...|.+++.+
T Consensus 191 ~d~kLvs~LlPFQreGv~faL~---Rg-GR~llADeMGLGKTiQAlaIA~yyr----aEwplliVcPAsvrftWa~al~r 262 (689)
T KOG1000|consen 191 MDPKLVSRLLPFQREGVIFALE---RG-GRILLADEMGLGKTIQALAIARYYR----AEWPLLIVCPASVRFTWAKALNR 262 (689)
T ss_pred cCHHHHHhhCchhhhhHHHHHh---cC-CeEEEecccccchHHHHHHHHHHHh----hcCcEEEEecHHHhHHHHHHHHH
Confidence 3677778899999999999984 34 5799999999999999999987664 47899999999999999999999
Q ss_pred hcCCCeE--EEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc
Q 039292 240 WCPSFSV--LQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN 317 (520)
Q Consensus 240 ~~p~~~v--~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~ 317 (520)
|+|.... ++..+...-. ..+....|.|++|+++.. ....+..-.|.+||+||+|++|+..
T Consensus 263 ~lps~~pi~vv~~~~D~~~-----------~~~t~~~v~ivSye~ls~-------l~~~l~~~~~~vvI~DEsH~Lk~sk 324 (689)
T KOG1000|consen 263 FLPSIHPIFVVDKSSDPLP-----------DVCTSNTVAIVSYEQLSL-------LHDILKKEKYRVVIFDESHMLKDSK 324 (689)
T ss_pred hcccccceEEEecccCCcc-----------ccccCCeEEEEEHHHHHH-------HHHHHhcccceEEEEechhhhhccc
Confidence 9998654 3333332210 112234799999999987 5667778789999999999999999
Q ss_pred hHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCC---------chHHHHHHHHhhc
Q 039292 318 SYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGE---------DRDLIGRMKSILG 388 (520)
Q Consensus 318 s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~---------~~~~~~~L~~~l~ 388 (520)
+++.+++.-+...+.+.|+|||||.-.++.|||.++..+++.+|....+|-..|.++. ...+..+|+.+|.
T Consensus 325 tkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~ 404 (689)
T KOG1000|consen 325 TKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLF 404 (689)
T ss_pred hhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHH
Confidence 9999999999889999999999999999999999999999999999999988887753 2345778888886
Q ss_pred ch-hhheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHH
Q 039292 389 PF-ILRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIE 428 (520)
Q Consensus 389 ~~-~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~ 428 (520)
.+ |+||+|.+|+.+||||...+ .+..+..+-..-+++..
T Consensus 405 k~lMIRRlK~dvL~qLPpKrr~V-v~~~~gr~da~~~~lv~ 444 (689)
T KOG1000|consen 405 KRLMIRRLKADVLKQLPPKRREV-VYVSGGRIDARMDDLVK 444 (689)
T ss_pred HHHHHHHHHHHHHhhCCccceEE-EEEcCCccchHHHHHHH
Confidence 55 89999999999999995544 44455555555455544
No 19
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.6e-33 Score=303.89 Aligned_cols=279 Identities=29% Similarity=0.475 Sum_probs=224.4
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC------CCCCEEEEeCCcchhhHHHHHHHhcC-
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN------DPGPHLIVCPASVLENWERELKKWCP- 242 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~------~~~~~LIV~P~sll~~W~~E~~~~~p- 242 (520)
.+|..+-.|+.........|||+||+||+|||+++++++........ ..+.+|||||.+++.||..|+.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 56666655555555556678999999999999999999876544333 56789999999999999999966553
Q ss_pred -CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHH
Q 039292 243 -SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRW 321 (520)
Q Consensus 243 -~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~ 321 (520)
.+.+.+|+| +......+ ..++||||||+++.. ..+..+.|-++|+||||.++|.+++.+
T Consensus 215 ~~l~v~v~~g--r~kd~~el---------~~~dVVltTy~il~~---------~~l~~i~w~Riildea~~ikn~~tq~~ 274 (674)
T KOG1001|consen 215 DKLSIYVYHG--RTKDKSEL---------NSYDVVLTTYDILKN---------SPLVKIKWLRIVLDEAHTIKNKDTQIF 274 (674)
T ss_pred cceEEEEecc--cccccchh---------cCCceEEeeHHHhhc---------ccccceeEEEEEeccccccCCcchHhh
Confidence 578889999 33322222 257899999999864 346678999999999999999999999
Q ss_pred HHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCC---c-hHHHHHHHHhhcchhhheeHh
Q 039292 322 KNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGE---D-RDLIGRMKSILGPFILRRLKS 397 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~---~-~~~~~~L~~~l~~~~lRR~k~ 397 (520)
+++..+ .+.+||+|||||+||++.+||+++.|+.-+.+..+..|-..+.... . ...+..++.+|.++++||+|.
T Consensus 275 ~a~~~L--~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~ 352 (674)
T KOG1001|consen 275 KAVCQL--DAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKE 352 (674)
T ss_pred hhheee--ccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhccccc
Confidence 999988 8999999999999999999999999999999998887765554432 2 466888999999999999997
Q ss_pred HH-----hhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCc
Q 039292 398 DV-----MQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHP 472 (520)
Q Consensus 398 ~v-----~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP 472 (520)
.- ...|||++..++.+.++..++.+|..+....+.........+... .....++-.+.+|||+|+||
T Consensus 353 ~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~--------~~Y~~~l~~lLrlrq~c~h~ 424 (674)
T KOG1001|consen 353 MEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVS--------STYAFFLKNLLRLRQACDHS 424 (674)
T ss_pred ccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhh--------hhHHHHHHHHHHHHHHccch
Confidence 32 236999999999999999999999999887766554433332221 13456788899999999999
Q ss_pred cccccc
Q 039292 473 LLVRRI 478 (520)
Q Consensus 473 ~L~~~~ 478 (520)
+|+...
T Consensus 425 ~lv~~~ 430 (674)
T KOG1001|consen 425 LLVMYE 430 (674)
T ss_pred Hhhhhh
Confidence 999754
No 20
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.98 E-value=1.6e-31 Score=298.43 Aligned_cols=244 Identities=19% Similarity=0.229 Sum_probs=181.3
Q ss_pred CccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCC
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPS 243 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~ 243 (520)
....|.|||...+.++.... ..++|||||||||||++|++++..+.. .+..+|+|||||.+++.||..|+.+|+ +
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~---~~R~LLADEvGLGKTIeAglil~~l~~-~g~~~rvLIVvP~sL~~QW~~El~~kF-~ 223 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRH---APRVLLADEVGLGKTIEAGMIIHQQLL-TGRAERVLILVPETLQHQWLVEMLRRF-N 223 (956)
T ss_pred CCCCCCHHHHHHHHHHhhcc---CCCEEEEeCCcCcHHHHHHHHHHHHHH-cCCCCcEEEEcCHHHHHHHHHHHHHHh-C
Confidence 34579999999998776543 256899999999999999999987754 567789999999999999999998776 3
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC---cchHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD---KNSYR 320 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn---~~s~~ 320 (520)
+.+.++.+..-..... .........+++|+||+.+.++.. ....+....|++|||||||++++ ..|..
T Consensus 224 l~~~i~~~~~~~~~~~-----~~~~pf~~~~~vI~S~~~l~~~~~----~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~ 294 (956)
T PRK04914 224 LRFSLFDEERYAEAQH-----DADNPFETEQLVICSLDFLRRNKQ----RLEQALAAEWDLLVVDEAHHLVWSEEAPSRE 294 (956)
T ss_pred CCeEEEcCcchhhhcc-----cccCccccCcEEEEEHHHhhhCHH----HHHHHhhcCCCEEEEechhhhccCCCCcCHH
Confidence 4555555443111000 000111246899999999986321 23456677999999999999995 35677
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhc-------------CC--chHHHHHHHH
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLN-------------GE--DRDLIGRMKS 385 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~-------------~~--~~~~~~~L~~ 385 (520)
++.+..++.+++++++|||||++|+..++|++|+||+|+.|++...|...... +. .......|..
T Consensus 295 y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ 374 (956)
T PRK04914 295 YQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGE 374 (956)
T ss_pred HHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 99999887788999999999999999999999999999999999888653221 11 1111112211
Q ss_pred h------------------------------------hcchhhheeHhHHhhhcCCcEEEEEEeCCCHHHHHH
Q 039292 386 I------------------------------------LGPFILRRLKSDVMQQLVPKIQWVEYVTMERPQEDA 422 (520)
Q Consensus 386 ~------------------------------------l~~~~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~ 422 (520)
+ .+++|+|+++++|.. +|.+..+.+.++|.+.-...
T Consensus 375 ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~-fp~R~~~~~~l~~~~~y~~~ 446 (956)
T PRK04914 375 LLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKG-FPKRELHPIPLPLPEQYQTA 446 (956)
T ss_pred HhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcC-CCcCceeEeecCCCHHHHHH
Confidence 1 237789999999875 99999999999997653333
No 21
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=99.94 E-value=1.4e-27 Score=260.99 Aligned_cols=281 Identities=22% Similarity=0.327 Sum_probs=208.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHH---------------hCCCCCCEEEEeCCcchhhHHHHHHHhcCCC-eEEEecCCC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKH---------------LNNDPGPHLIVCPASVLENWERELKKWCPSF-SVLQYHGAG 253 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~---------------~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~-~v~~~~g~~ 253 (520)
+++|++||+|||.-.++....-+. .....|.+|||||.+++.||..||.++++.. +++.|.|..
T Consensus 377 ~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~Gir 456 (1394)
T KOG0298|consen 377 VQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYFGIR 456 (1394)
T ss_pred eeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEechh
Confidence 499999999999887766532211 1123478999999999999999999999877 999999986
Q ss_pred chhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccc---------------hHHHHhhcCccEEEEeCccccCCcch
Q 039292 254 RTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKD---------------DRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~---------------~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
....... . -...++||+|||+.++........ ..+.|..+.|.+|++|||+.+....|
T Consensus 457 k~~~~~~-~------el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS 529 (1394)
T KOG0298|consen 457 KTFWLSP-F------ELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSS 529 (1394)
T ss_pred hhcccCc-h------hhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHH
Confidence 5432222 0 112589999999999875443311 22346777899999999999999889
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCC-chHHHHHHHHhhcchhhheeHh
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGE-DRDLIGRMKSILGPFILRRLKS 397 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~-~~~~~~~L~~~l~~~~lRR~k~ 397 (520)
...++++.+ .+.++|+.||||+|+ +.+|+.+|.||.-..|+....|..-..... .+.....+.+++...+.|+.|.
T Consensus 530 ~~a~M~~rL--~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~iq~v~~~~~~ra~~~~~~dl~~q~l~R~~k~ 606 (1394)
T KOG0298|consen 530 AAAEMVRRL--HAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDFIQTVDKAYQLRAKCEPLLDLFKQLLWRTFKS 606 (1394)
T ss_pred HHHHHHHHh--hhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHHHHHHHHHHHHHhhhhhHHHHHHhhhhhhhhH
Confidence 999999998 899999999999999 999999999999888998876665433211 1234557888899999999999
Q ss_pred HHhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhc-----ccchhhhhcCCChhHHHHHHHHHhhhcc
Q 039292 398 DVMQQ--LVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLS-----DADLATIVGVLPQRQISNYFVQFRKIAN 470 (520)
Q Consensus 398 ~v~~~--LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~l~~LRkicn 470 (520)
+|..+ +||..+.+.+..|++.|..+|+......-...+....+.. ..+....+.......+++.+.+||++||
T Consensus 607 ~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~~~t~v~e~~~~~~~~k~~~l~~~sd~~~l~~~~~a~i~~~l~rLRq~Cc 686 (1394)
T KOG0298|consen 607 KVEHELGLPPQTEVVHRLELSAVESHVYREEHFTCVEEFAAAVEKLKRHNLDNSSDLASLSPQLLAIILKWLLRLRQACC 686 (1394)
T ss_pred HHHHHhCCCchHHHHHHHHhcchhhhhhHHHHhhHHHHHHHHHHHHHHhccccccccccCChhhHHHHHHHHHHHHHhhc
Confidence 99875 7999999999999999888887654332222222222211 1111122233345678999999999999
Q ss_pred CcccccccCC
Q 039292 471 HPLLVRRIYS 480 (520)
Q Consensus 471 HP~L~~~~~~ 480 (520)
||.......+
T Consensus 687 hplv~~~~ls 696 (1394)
T KOG0298|consen 687 HPLVGNSNLS 696 (1394)
T ss_pred ccccccCCcc
Confidence 9999876544
No 22
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=2.6e-23 Score=225.67 Aligned_cols=204 Identities=19% Similarity=0.321 Sum_probs=140.5
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhc--
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWC-- 241 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~-- 241 (520)
...|||||.+++.+|+.... .++|||..+||+|||++++++++.+ .+++|||||... +.||.++|.+|+
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr--~r~GIIvLPtGaGKTlvai~aa~~l------~k~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVTAACTV------KKSCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCC--CCCcEEEeCCCCChHHHHHHHHHHh------CCCEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 46899999999999974211 1346999999999999999988755 368999999765 889999999996
Q ss_pred CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc---chHHHHhhcCccEEEEeCccccCCcch
Q 039292 242 PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK---DDRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 242 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~---~~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
+...+..|.|..+... .....|+|+||+++........ .....|....|++||+||||++.+ .
T Consensus 325 ~~~~I~~~tg~~k~~~------------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA--~ 390 (732)
T TIGR00603 325 DDSQICRFTSDAKERF------------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA--A 390 (732)
T ss_pred CCceEEEEecCccccc------------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH--H
Confidence 3456777777543321 1135899999999875322111 123445566899999999999943 2
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCCchHHHHHHHHhhcchhhheeHhH
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGEDRDLIGRMKSILGPFILRRLKSD 398 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~ 398 (520)
...+.+..+ .+.+||+|||||++++- .+..+.|+ ++|.+.+....+
T Consensus 391 ~fr~il~~l--~a~~RLGLTATP~ReD~--~~~~L~~L------------------------------iGP~vye~~~~e 436 (732)
T TIGR00603 391 MFRRVLTIV--QAHCKLGLTATLVREDD--KITDLNFL------------------------------IGPKLYEANWME 436 (732)
T ss_pred HHHHHHHhc--CcCcEEEEeecCcccCC--chhhhhhh------------------------------cCCeeeecCHHH
Confidence 233344445 78899999999998762 23333332 233333333333
Q ss_pred Hh--hhcCCcEEEEEEeCCCHHHHHHHH
Q 039292 399 VM--QQLVPKIQWVEYVTMERPQEDAYR 424 (520)
Q Consensus 399 v~--~~LP~k~e~~v~v~ms~~Q~~~Y~ 424 (520)
+. ..|.+.....++|+|++.....|-
T Consensus 437 Li~~G~LA~~~~~ev~v~~t~~~~~~yl 464 (732)
T TIGR00603 437 LQKKGFIANVQCAEVWCPMTPEFYREYL 464 (732)
T ss_pred HHhCCccccceEEEEEecCCHHHHHHHH
Confidence 33 246777778899999997655553
No 23
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.78 E-value=6.9e-18 Score=177.96 Aligned_cols=210 Identities=22% Similarity=0.340 Sum_probs=149.2
Q ss_pred CCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHh
Q 039292 162 SDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKW 240 (520)
Q Consensus 162 ~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~ 240 (520)
..+...|||||.+++..|......+ +.+++..+||+|||+.++.++..+.. ++|||||. .++.||.+.+.++
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~-~~gvivlpTGaGKT~va~~~~~~~~~------~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTE-RRGVIVLPTGAGKTVVAAEAIAELKR------STLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccC-CceEEEeCCCCCHHHHHHHHHHHhcC------CEEEEECcHHHHHHHHHHHHHh
Confidence 3445689999999999998776653 45699999999999999999876632 39999996 5689999888888
Q ss_pred cCCC-eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchH
Q 039292 241 CPSF-SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSY 319 (520)
Q Consensus 241 ~p~~-~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~ 319 (520)
+... .+..+.|...... +..|.|+||+++.+.. ....+....|++||+||||++..+..
T Consensus 104 ~~~~~~~g~~~~~~~~~~--------------~~~i~vat~qtl~~~~-----~l~~~~~~~~~liI~DE~Hh~~a~~~- 163 (442)
T COG1061 104 LLLNDEIGIYGGGEKELE--------------PAKVTVATVQTLARRQ-----LLDEFLGNEFGLIIFDEVHHLPAPSY- 163 (442)
T ss_pred cCCccccceecCceeccC--------------CCcEEEEEhHHHhhhh-----hhhhhcccccCEEEEEccccCCcHHH-
Confidence 7543 5566666543321 0379999999998732 22344445799999999999965433
Q ss_pred HHHHHHHHhhhcCc-EEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCCchHHHHHHHHhhcchhhheeHhH
Q 039292 320 RWKNLMSVARNANQ-RLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGEDRDLIGRMKSILGPFILRRLKSD 398 (520)
Q Consensus 320 ~~~~l~~l~~~~~~-rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~ 398 (520)
+.+.... .+.+ +++|||||.......... +...++|.+......+
T Consensus 164 --~~~~~~~-~~~~~~LGLTATp~R~D~~~~~~-------------------------------l~~~~g~~vy~~~~~~ 209 (442)
T COG1061 164 --RRILELL-SAAYPRLGLTATPEREDGGRIGD-------------------------------LFDLIGPIVYEVSLKE 209 (442)
T ss_pred --HHHHHhh-hcccceeeeccCceeecCCchhH-------------------------------HHHhcCCeEeecCHHH
Confidence 3333332 4455 999999998554333333 3333445555555554
Q ss_pred Hhh--hcCCcEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 039292 399 VMQ--QLVPKIQWVEYVTMERPQEDAYRVAIEEYRA 432 (520)
Q Consensus 399 v~~--~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~ 432 (520)
... .|.|.....+.+.++......|......+..
T Consensus 210 li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~ 245 (442)
T COG1061 210 LIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRE 245 (442)
T ss_pred HHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhh
Confidence 433 5888999999999999999999987766553
No 24
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.75 E-value=8.4e-18 Score=156.00 Aligned_cols=166 Identities=23% Similarity=0.351 Sum_probs=109.0
Q ss_pred CCcHHHHHHHHHHHHHHhcC--CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCC
Q 039292 167 VLKPYQLVGVNFLLLLYRKG--IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPS 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~--~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~ 243 (520)
.|||||.+++..+....... .+.+++..+||+|||++++.++..+.. ++|||||. +++.||..+|..+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~~~~~~ 76 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFDDFGSE 76 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHHHhhhh
Confidence 68999999999999876654 456799999999999999998877743 89999997 7789999999888766
Q ss_pred CeEEEecCC---Cch----hhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccc------hHHHHhhcCccEEEEeCc
Q 039292 244 FSVLQYHGA---GRT----AYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKD------DRKILKRWRWSCVLMDEA 310 (520)
Q Consensus 244 ~~v~~~~g~---~~~----~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~------~~~~l~~~~~~~vIiDEa 310 (520)
......... ... ........ .........++++++|+.+......... .........+++||+|||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEa 155 (184)
T PF04851_consen 77 KYNFFEKSIKPAYDSKEFISIQDDISD-KSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEA 155 (184)
T ss_dssp SEEEEE--GGGCCE-SEEETTTTEEEH-HHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETG
T ss_pred hhhhccccccccccccccccccccccc-ccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehh
Confidence 544422211 000 00000000 0001123568999999999864322111 112234457899999999
Q ss_pred cccCCcchHHHHHHHHHhhhcCcEEEEeccCCC
Q 039292 311 HALKDKNSYRWKNLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 311 H~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~ 343 (520)
|++.+... ++.+... .+.++|+|||||.+
T Consensus 156 H~~~~~~~--~~~i~~~--~~~~~l~lTATp~r 184 (184)
T PF04851_consen 156 HHYPSDSS--YREIIEF--KAAFILGLTATPFR 184 (184)
T ss_dssp GCTHHHHH--HHHHHHS--SCCEEEEEESS-S-
T ss_pred hhcCCHHH--HHHHHcC--CCCeEEEEEeCccC
Confidence 99954332 6666654 78899999999963
No 25
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.72 E-value=9.7e-18 Score=168.70 Aligned_cols=157 Identities=22% Similarity=0.454 Sum_probs=119.5
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcC-
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCP- 242 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p- 242 (520)
..+|||||...++.|..+-+.. .+|+.-++|+|||++.++.++.+ .+.+||+|..++ +.||..+|..|..
T Consensus 300 st~iRpYQEksL~KMFGNgRAR--SGiIVLPCGAGKtLVGvTAa~ti------kK~clvLcts~VSVeQWkqQfk~wsti 371 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKTLVGVTAACTI------KKSCLVLCTSAVSVEQWKQQFKQWSTI 371 (776)
T ss_pred ccccCchHHHHHHHHhCCCccc--CceEEEecCCCCceeeeeeeeee------cccEEEEecCccCHHHHHHHHHhhccc
Confidence 4589999999999998654433 34888999999999998887655 457899999776 8999999999973
Q ss_pred -CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcc---ccchHHHHhhcCccEEEEeCccccCCcch
Q 039292 243 -SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQ---QKDDRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 243 -~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~---~~~~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
+-.+..++...+.. .+.+.+|+|+||.++...... ......++....|+++|+||+|.+ -+
T Consensus 372 ~d~~i~rFTsd~Ke~------------~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv---PA 436 (776)
T KOG1123|consen 372 QDDQICRFTSDAKER------------FPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV---PA 436 (776)
T ss_pred CccceEEeecccccc------------CCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc---hH
Confidence 34556666554332 234679999999999753322 223456788889999999999998 55
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCCCC
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQND 345 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~n~ 345 (520)
.+++.+..+. .+..+++||||-+...
T Consensus 437 ~MFRRVlsiv-~aHcKLGLTATLvRED 462 (776)
T KOG1123|consen 437 KMFRRVLSIV-QAHCKLGLTATLVRED 462 (776)
T ss_pred HHHHHHHHHH-HHHhhccceeEEeecc
Confidence 6666666654 6788999999998653
No 26
>PRK13766 Hef nuclease; Provisional
Probab=99.71 E-value=8.3e-16 Score=174.21 Aligned_cols=169 Identities=19% Similarity=0.195 Sum_probs=118.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC--C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP--S 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--~ 243 (520)
.+|+||...+..++. + ++|++.+||+|||++++.++..+.. ...+++|||||+ .++.||...+.+++. .
T Consensus 15 ~~r~yQ~~~~~~~l~----~--n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~ 86 (773)
T PRK13766 15 EARLYQQLLAATALK----K--NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIPE 86 (773)
T ss_pred CccHHHHHHHHHHhc----C--CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCC
Confidence 689999999887763 2 4699999999999998887766543 456799999997 678899999998863 2
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKN 323 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~ 323 (520)
..+..++|......+..+.. ..+|+|+|++.+..... ...+....|++||+||||++.+..+..+-+
T Consensus 87 ~~v~~~~g~~~~~~r~~~~~--------~~~iiv~T~~~l~~~l~-----~~~~~~~~~~liVvDEaH~~~~~~~~~~i~ 153 (773)
T PRK13766 87 EKIVVFTGEVSPEKRAELWE--------KAKVIVATPQVIENDLI-----AGRISLEDVSLLIFDEAHRAVGNYAYVYIA 153 (773)
T ss_pred ceEEEEeCCCCHHHHHHHHh--------CCCEEEECHHHHHHHHH-----cCCCChhhCcEEEEECCccccccccHHHHH
Confidence 47788888755433222221 35899999999876431 122334469999999999998765544322
Q ss_pred HHHH-hhhcCcEEEEeccCCCCCHHHHHHHHHHhC
Q 039292 324 LMSV-ARNANQRLMLTGTPLQNDLHELWSLLEFMM 357 (520)
Q Consensus 324 l~~l-~~~~~~rl~LTgTPi~n~~~el~~ll~fl~ 357 (520)
-... ..+.+++++|||||..+ ...+..++..|.
T Consensus 154 ~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~ 187 (773)
T PRK13766 154 ERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLG 187 (773)
T ss_pred HHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCC
Confidence 2211 11345699999999876 455555555554
No 27
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.65 E-value=3.5e-15 Score=139.21 Aligned_cols=163 Identities=27% Similarity=0.323 Sum_probs=112.7
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC-CcchhhHHHHHHHhcCC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP-ASVLENWERELKKWCPS 243 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P-~sll~~W~~E~~~~~p~ 243 (520)
..+++++|..++.++.... +.+++..++|+|||..++.++..... ....+++||++| ..+..+|..++..+++.
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~----~~~~i~~~~GsGKT~~~~~~~~~~~~-~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~ 80 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL----RDVILAAPTGSGKTLAALLPALEALK-RGKGKRVLVLVPTRELAEQWAEELKKLGPS 80 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC----CcEEEECCCCCchhHHHHHHHHHHhc-ccCCCcEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 3478999999999887321 46799999999999977777665543 233578999999 56778899999998865
Q ss_pred ---CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC-cchH
Q 039292 244 ---FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD-KNSY 319 (520)
Q Consensus 244 ---~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn-~~s~ 319 (520)
.....+++........ .+.. ...+++++||+.+........ +....++++|+||+|.+.+ ....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~---~~~~----~~~~v~~~t~~~l~~~~~~~~-----~~~~~~~~iIiDE~h~~~~~~~~~ 148 (201)
T smart00487 81 LGLKVVGLYGGDSKREQLR---KLES----GKTDILVTTPGRLLDLLENDL-----LELSNVDLVILDEAHRLLDGGFGD 148 (201)
T ss_pred CCeEEEEEeCCcchHHHHH---HHhc----CCCCEEEeChHHHHHHHHcCC-----cCHhHCCEEEEECHHHHhcCCcHH
Confidence 3444555544322111 1111 124999999999887432211 3445688999999999986 4444
Q ss_pred HHHHHHHHhhhcCcEEEEeccCCCC
Q 039292 320 RWKNLMSVARNANQRLMLTGTPLQN 344 (520)
Q Consensus 320 ~~~~l~~l~~~~~~rl~LTgTPi~n 344 (520)
.+..+........+++++||||..+
T Consensus 149 ~~~~~~~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 149 QLEKLLKLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HHHHHHHhCCccceEEEEecCCchh
Confidence 4444444333578899999999744
No 28
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.65 E-value=1.8e-15 Score=162.54 Aligned_cols=146 Identities=17% Similarity=0.215 Sum_probs=102.2
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc--C
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC--P 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~--p 242 (520)
..|+|||..++..++. + ..+|+..+||+|||++++.++..+.. ...+++|||||+ .|+.||.++|.+|. +
T Consensus 113 ~~~r~~Q~~av~~~l~----~-~~~il~apTGsGKT~i~~~l~~~~~~--~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----N-NRRLLNLPTSAGKSLIQYLLSRYYLE--NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCCHHHHHHHHHHHh----c-CceEEEeCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 5899999999987763 3 23599999999999988766544332 234489999996 67899999999986 3
Q ss_pred CCeE-EEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHH
Q 039292 243 SFSV-LQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRW 321 (520)
Q Consensus 243 ~~~v-~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~ 321 (520)
...+ .++.|.... ....|+|+|++.+.+.. ...+ ..+++||+||||++.... ..
T Consensus 186 ~~~~~~i~~g~~~~---------------~~~~I~VaT~qsl~~~~------~~~~--~~~~~iIvDEaH~~~~~~--~~ 240 (501)
T PHA02558 186 REAMHKIYSGTAKD---------------TDAPIVVSTWQSAVKQP------KEWF--DQFGMVIVDECHLFTGKS--LT 240 (501)
T ss_pred ccceeEEecCcccC---------------CCCCEEEeeHHHHhhch------hhhc--cccCEEEEEchhcccchh--HH
Confidence 3333 344454321 13589999999986521 1122 368999999999996432 22
Q ss_pred HHHHHHhhhcCcEEEEeccCCCC
Q 039292 322 KNLMSVARNANQRLMLTGTPLQN 344 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi~n 344 (520)
..+..+ .+++++++|||||...
T Consensus 241 ~il~~~-~~~~~~lGLTATp~~~ 262 (501)
T PHA02558 241 SIITKL-DNCKFKFGLTGSLRDG 262 (501)
T ss_pred HHHHhh-hccceEEEEeccCCCc
Confidence 333333 3578899999999654
No 29
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.63 E-value=3.6e-14 Score=144.53 Aligned_cols=168 Identities=20% Similarity=0.188 Sum_probs=120.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc--CC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC--PS 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~--p~ 243 (520)
.-|.||..-..-.+. +.++++.+||||||++|+.++...+.. .++.+|+++|+ .|+.|-.+-+.+++ |.
T Consensus 15 e~R~YQ~~i~a~al~------~NtLvvlPTGLGKT~IA~~V~~~~l~~--~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 15 EPRLYQLNIAAKALF------KNTLVVLPTGLGKTFIAAMVIANRLRW--FGGKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred cHHHHHHHHHHHHhh------cCeEEEecCCccHHHHHHHHHHHHHHh--cCCeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 568899987766652 247999999999999998888754332 33489999994 68888888888886 66
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKN 323 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~ 323 (520)
..+..+.|..+...+...+. ...|+++|++++.++. ....+....+.+||+|||||.-+..+..+-+
T Consensus 87 ~~i~~ltGev~p~~R~~~w~--------~~kVfvaTPQvveNDl-----~~Grid~~dv~~lifDEAHRAvGnyAYv~Va 153 (542)
T COG1111 87 DEIAALTGEVRPEEREELWA--------KKKVFVATPQVVENDL-----KAGRIDLDDVSLLIFDEAHRAVGNYAYVFVA 153 (542)
T ss_pred hheeeecCCCChHHHHHHHh--------hCCEEEeccHHHHhHH-----hcCccChHHceEEEechhhhccCcchHHHHH
Confidence 88999999877665554443 4599999999998854 2334555578999999999998776655443
Q ss_pred HHHHhh-hcCcEEEEeccCCCCCHHHHHHHHHHh
Q 039292 324 LMSVAR-NANQRLMLTGTPLQNDLHELWSLLEFM 356 (520)
Q Consensus 324 l~~l~~-~~~~rl~LTgTPi~n~~~el~~ll~fl 356 (520)
-.-+.. +.++.++|||||- ++.+.+...++-|
T Consensus 154 ~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nL 186 (542)
T COG1111 154 KEYLRSAKNPLILGLTASPG-SDLEKIQEVVENL 186 (542)
T ss_pred HHHHHhccCceEEEEecCCC-CCHHHHHHHHHhC
Confidence 333322 3456899999995 3444444444443
No 30
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.61 E-value=8.9e-15 Score=168.01 Aligned_cols=167 Identities=18% Similarity=0.144 Sum_probs=110.5
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC-CcchhhHHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP-ASVLENWERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P-~sll~~W~~E~~~~~p~~ 244 (520)
..||+||..+|..+......+.+++||.+.+|+|||+++++++..+.. ....+++|+||| ..|+.||..+|..+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~-~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK-AKRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh-cCccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 479999999999988777666667899999999999999998877754 345578999999 467899999999875321
Q ss_pred e--EE-EecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc----
Q 039292 245 S--VL-QYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN---- 317 (520)
Q Consensus 245 ~--v~-~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~---- 317 (520)
. +. ++... .+. .........|+|+|++++.+...........+....|++||+|||||.....
T Consensus 491 ~~~~~~i~~i~-------~L~---~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~ 560 (1123)
T PRK11448 491 DQTFASIYDIK-------GLE---DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMS 560 (1123)
T ss_pred ccchhhhhchh-------hhh---hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccc
Confidence 1 10 11100 000 0111224699999999986632211111111233568999999999963100
Q ss_pred ------------hHHHHHHHHHhhhcCcEEEEeccCCCCC
Q 039292 318 ------------SYRWKNLMSVARNANQRLMLTGTPLQND 345 (520)
Q Consensus 318 ------------s~~~~~l~~l~~~~~~rl~LTgTPi~n~ 345 (520)
...++.+.... . ..+|+|||||..+.
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yF-d-A~~IGLTATP~r~t 598 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYF-D-AVKIGLTATPALHT 598 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhc-C-ccEEEEecCCccch
Confidence 12333333321 3 57899999999754
No 31
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.58 E-value=1.4e-14 Score=127.20 Aligned_cols=140 Identities=21% Similarity=0.240 Sum_probs=95.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh-HHHHHHHhcC-CCeEEEecCCCchhhhHHHHHHhh
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN-WERELKKWCP-SFSVLQYHGAGRTAYSRELSSLAK 266 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~-W~~E~~~~~p-~~~v~~~~g~~~~~~~~~~~~~~~ 266 (520)
++++.+++|+|||.+++.++..+... ...++++|+||...+.+ |...+..+.. ...+..+.+..........
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~-~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDS-LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKL----- 75 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhc-ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHH-----
Confidence 57999999999999999999877553 46689999999876655 5566677765 4666666665433322210
Q ss_pred cCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHH-HHHHHhhhcCcEEEEeccC
Q 039292 267 AGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWK-NLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 267 ~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~-~l~~l~~~~~~rl~LTgTP 341 (520)
.....+|+++||+.+....... .+....++++|+||+|.+.+....... ..........+++++||||
T Consensus 76 --~~~~~~i~i~t~~~~~~~~~~~-----~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 76 --LSGKTDIVVGTPGRLLDELERL-----KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred --hcCCCCEEEECcHHHHHHHHcC-----CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 1125799999999887633211 123447999999999999876544431 1112223677899999998
No 32
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.53 E-value=1.4e-13 Score=152.26 Aligned_cols=164 Identities=16% Similarity=0.140 Sum_probs=107.7
Q ss_pred CccCCcHHHHHHHHHHHHHHhc-----CCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHH
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRK-----GIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWEREL 237 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~-----~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~ 237 (520)
.+...|+||..||+.+...... +.+++|+.+.+|+|||++++.++..+.. .....++|||||. .|..||.++|
T Consensus 235 ~k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~-~~~~~~vl~lvdR~~L~~Q~~~~f 313 (667)
T TIGR00348 235 TKPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE-LLKNPKVFFVVDRRELDYQLMKEF 313 (667)
T ss_pred eeeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh-hcCCCeEEEEECcHHHHHHHHHHH
Confidence 3456899999999999887655 3356799999999999999998877754 3455689999995 5789999999
Q ss_pred HHhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcC-ccEEEEeCccccCCc
Q 039292 238 KKWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWR-WSCVLMDEAHALKDK 316 (520)
Q Consensus 238 ~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~-~~~vIiDEaH~ikn~ 316 (520)
..+.+... .+... ...+..... .....|+|+|++.|...... ....+.... ..+||+|||||...
T Consensus 314 ~~~~~~~~----~~~~s---~~~L~~~l~---~~~~~iivtTiQk~~~~~~~---~~~~~~~~~~~~lvIvDEaHrs~~- 379 (667)
T TIGR00348 314 QSLQKDCA----ERIES---IAELKRLLE---KDDGGIIITTIQKFDKKLKE---EEEKFPVDRKEVVVIFDEAHRSQY- 379 (667)
T ss_pred HhhCCCCC----cccCC---HHHHHHHHh---CCCCCEEEEEhHHhhhhHhh---hhhccCCCCCCEEEEEEcCccccc-
Confidence 99875311 11111 111111111 12358999999999752110 001111111 23899999998742
Q ss_pred chHHHHHHHHHhhhcCcEEEEeccCCCC
Q 039292 317 NSYRWKNLMSVARNANQRLMLTGTPLQN 344 (520)
Q Consensus 317 ~s~~~~~l~~l~~~~~~rl~LTgTPi~n 344 (520)
....+.++... +..++++|||||+..
T Consensus 380 -~~~~~~l~~~~-p~a~~lGfTaTP~~~ 405 (667)
T TIGR00348 380 -GELAKNLKKAL-KNASFFGFTGTPIFK 405 (667)
T ss_pred -hHHHHHHHhhC-CCCcEEEEeCCCccc
Confidence 22334454332 567899999999853
No 33
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.50 E-value=5.1e-14 Score=150.87 Aligned_cols=181 Identities=18% Similarity=0.219 Sum_probs=132.7
Q ss_pred CCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC-CcchhhHHHHHHH
Q 039292 161 DSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP-ASVLENWERELKK 239 (520)
Q Consensus 161 ~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P-~sll~~W~~E~~~ 239 (520)
+......+|+||..||+...+...+|.+.++|...||+|||.+||+++..|.. .+..+++|.++- ++++.|-..+|+.
T Consensus 159 ~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r-~~~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 159 DIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIK-SGWVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHh-cchhheeeEEechHHHHHHHHHHHHH
Confidence 34456689999999999999999999888999999999999999999998866 677889999998 5778888889999
Q ss_pred hcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchH
Q 039292 240 WCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSY 319 (520)
Q Consensus 240 ~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~ 319 (520)
|.|....+........ ...+.|+|+||+++.....+.......+....||+||+|||||-- - .
T Consensus 238 ~~P~~~~~n~i~~~~~--------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi--~-~ 300 (875)
T COG4096 238 FLPFGTKMNKIEDKKG--------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI--Y-S 300 (875)
T ss_pred hCCCccceeeeecccC--------------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH--H-h
Confidence 9998665543322111 113699999999998765544344455666679999999999751 2 2
Q ss_pred HHHHHHHHhhhcCcEEEEeccCCC-----------CCHHHHHHHHHHhCCCCC
Q 039292 320 RWKNLMSVARNANQRLMLTGTPLQ-----------NDLHELWSLLEFMMPDLF 361 (520)
Q Consensus 320 ~~~~l~~l~~~~~~rl~LTgTPi~-----------n~~~el~~ll~fl~p~~~ 361 (520)
.++.+... -...+++|||||-. ..+...|++=.-+..+++
T Consensus 301 ~~~~I~dY--FdA~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfL 351 (875)
T COG4096 301 EWSSILDY--FDAATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFL 351 (875)
T ss_pred hhHHHHHH--HHHHHHhhccCcccccccccccccCCCcceeecHHHHhhcccc
Confidence 23333333 24457788999976 344445666555544443
No 34
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.48 E-value=7.4e-13 Score=125.37 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=105.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHH-HHHHHHHHHhC-CCCCCEEEEeCC-cchhhHHHHHHHhcC-
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQA-ITYLMLLKHLN-NDPGPHLIVCPA-SVLENWERELKKWCP- 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~a-ia~l~~l~~~~-~~~~~~LIV~P~-sll~~W~~E~~~~~p- 242 (520)
.++++|.+++..+.. + .++++..++|+|||+.. +.++..+.... .....+|||||. .++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~~----~-~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~ 95 (203)
T cd00268 21 KPTPIQARAIPPLLS----G-RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKH 95 (203)
T ss_pred CCCHHHHHHHHHHhc----C-CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 589999999988874 4 46799999999999884 44444443321 345579999996 467889998888864
Q ss_pred -CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-hHH
Q 039292 243 -SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-SYR 320 (520)
Q Consensus 243 -~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-s~~ 320 (520)
+..+..++|......... .+ ....+|+|+|.+.+........ +.-..++++|+||+|.+.+.. ...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~--~~-----~~~~~iiv~T~~~l~~~l~~~~-----~~~~~l~~lIvDE~h~~~~~~~~~~ 163 (203)
T cd00268 96 TNLKVVVIYGGTSIDKQIR--KL-----KRGPHIVVATPGRLLDLLERGK-----LDLSKVKYLVLDEADRMLDMGFEDQ 163 (203)
T ss_pred CCceEEEEECCCCHHHHHH--Hh-----cCCCCEEEEChHHHHHHHHcCC-----CChhhCCEEEEeChHHhhccChHHH
Confidence 566677777554322211 11 1246899999988866443221 223357899999999986432 222
Q ss_pred HHHHHHHhhhcCcEEEEeccCC
Q 039292 321 WKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi 342 (520)
...+........+.+++||||-
T Consensus 164 ~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 164 IREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred HHHHHHhCCcccEEEEEeccCC
Confidence 2333322224567899999998
No 35
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.45 E-value=1.4e-12 Score=119.41 Aligned_cols=161 Identities=19% Similarity=0.275 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCC--CeE
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPS--FSV 246 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~--~~v 246 (520)
|+|.+++..+. .+ ..+|+..++|+|||..++..+....... ....+||++|. .++.+-.+++..++.. .++
T Consensus 2 ~~Q~~~~~~i~----~~-~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~ 75 (169)
T PF00270_consen 2 PLQQEAIEAII----SG-KNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNTNVRV 75 (169)
T ss_dssp HHHHHHHHHHH----TT-SEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSE
T ss_pred HHHHHHHHHHH----cC-CCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccccccc
Confidence 79999998887 33 4589999999999998876554433322 45689999996 5677788889888754 677
Q ss_pred EEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc-chHHHHHHH
Q 039292 247 LQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK-NSYRWKNLM 325 (520)
Q Consensus 247 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~-~s~~~~~l~ 325 (520)
..++|......... ..+ ....+|+|+|++.|....... ...-...++||+||+|.+... .......+.
T Consensus 76 ~~~~~~~~~~~~~~-~~~-----~~~~~ilv~T~~~l~~~~~~~-----~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~ 144 (169)
T PF00270_consen 76 VLLHGGQSISEDQR-EVL-----SNQADILVTTPEQLLDLISNG-----KINISRLSLIVIDEAHHLSDETFRAMLKSIL 144 (169)
T ss_dssp EEESTTSCHHHHHH-HHH-----HTTSSEEEEEHHHHHHHHHTT-----SSTGTTESEEEEETHHHHHHTTHHHHHHHHH
T ss_pred cccccccccccccc-ccc-----cccccccccCcchhhcccccc-----ccccccceeeccCcccccccccHHHHHHHHH
Confidence 77766554221111 111 114699999999998754320 011234899999999999652 222333333
Q ss_pred HHhh--hcCcEEEEeccCCCCCHHH
Q 039292 326 SVAR--NANQRLMLTGTPLQNDLHE 348 (520)
Q Consensus 326 ~l~~--~~~~rl~LTgTPi~n~~~e 348 (520)
.... ...+.+++||||- .++..
T Consensus 145 ~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 145 RRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp HHSHTTTTSEEEEEESSST-HHHHH
T ss_pred HHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 3221 2366899999998 55543
No 36
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.38 E-value=9.5e-12 Score=137.34 Aligned_cols=163 Identities=18% Similarity=0.215 Sum_probs=110.0
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCC-CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGI-AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCP 242 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~-~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p 242 (520)
.-.|.++|..++..+........ -..||..++|+|||+.++..+..... .+..++|++|+. |..||.+.+.++++
T Consensus 233 pf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~---~g~qvlilaPT~~LA~Q~~~~~~~l~~ 309 (630)
T TIGR00643 233 PFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE---AGYQVALMAPTEILAEQHYNSLRNLLA 309 (630)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEECCHHHHHHHHHHHHHHHhc
Confidence 34799999999999986543321 12589999999999987654433322 356899999975 55889999999987
Q ss_pred --CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHH
Q 039292 243 --SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYR 320 (520)
Q Consensus 243 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~ 320 (520)
++++.+++|............... .+..+|+|.|+..+... +.-.+.++||+||+|++.- ..
T Consensus 310 ~~gi~v~lltg~~~~~~r~~~~~~i~---~g~~~IiVgT~~ll~~~----------~~~~~l~lvVIDEaH~fg~---~q 373 (630)
T TIGR00643 310 PLGIEVALLTGSLKGKRRKELLETIA---SGQIHLVVGTHALIQEK----------VEFKRLALVIIDEQHRFGV---EQ 373 (630)
T ss_pred ccCcEEEEEecCCCHHHHHHHHHHHh---CCCCCEEEecHHHHhcc----------ccccccceEEEechhhccH---HH
Confidence 478888888765443332222111 22469999999887531 1224578999999999732 22
Q ss_pred HHHHHHHhh--hcCcEEEEeccCCCCCH
Q 039292 321 WKNLMSVAR--NANQRLMLTGTPLQNDL 346 (520)
Q Consensus 321 ~~~l~~l~~--~~~~rl~LTgTPi~n~~ 346 (520)
...+..... ...+.++|||||+...+
T Consensus 374 r~~l~~~~~~~~~~~~l~~SATp~prtl 401 (630)
T TIGR00643 374 RKKLREKGQGGFTPHVLVMSATPIPRTL 401 (630)
T ss_pred HHHHHHhcccCCCCCEEEEeCCCCcHHH
Confidence 223333221 15779999999987554
No 37
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.37 E-value=6.5e-12 Score=135.06 Aligned_cols=174 Identities=19% Similarity=0.220 Sum_probs=117.0
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~ 244 (520)
-.||+||.+-+.-.+ + ..+|+|.+||+|||..|+.++....+ -...+++++.+|+. ++.|-...+..++-.-
T Consensus 61 ~~lR~YQ~eivq~AL-----g-kNtii~lPTG~GKTfIAa~Vm~nh~r-w~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~ 133 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-----G-KNTIIALPTGSGKTFIAAVIMKNHFE-WRPKGKVVFLAPTRPLVNQQIACFSIYLIPY 133 (746)
T ss_pred ccccHHHHHHhHHhh-----c-CCeEEEeecCCCccchHHHHHHHHHh-cCCcceEEEeeCCchHHHHHHHHHhhccCcc
Confidence 379999999997776 1 34799999999999988777655544 34458999999964 6677668888877444
Q ss_pred eEEEecCCC-chhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch--HHH
Q 039292 245 SVLQYHGAG-RTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS--YRW 321 (520)
Q Consensus 245 ~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s--~~~ 321 (520)
.+....|.. .......+. ...+|+|+|.+.+.+.......+. -..|.++||||||+.....+ ...
T Consensus 134 ~~T~~l~~~~~~~~r~~i~--------~s~~vff~TpQil~ndL~~~~~~~----ls~fs~iv~DE~Hra~kn~~Y~~Vm 201 (746)
T KOG0354|consen 134 SVTGQLGDTVPRSNRGEIV--------ASKRVFFRTPQILENDLKSGLHDE----LSDFSLIVFDECHRTSKNHPYNNIM 201 (746)
T ss_pred cceeeccCccCCCchhhhh--------cccceEEeChHhhhhhcccccccc----cceEEEEEEcccccccccccHHHHH
Confidence 444444442 222222211 135999999999988553222111 24589999999999865433 333
Q ss_pred HHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCC
Q 039292 322 KNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPD 359 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~ 359 (520)
+.+........+.|+|||||- ++.....+.+.=|...
T Consensus 202 r~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as 238 (746)
T KOG0354|consen 202 REYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS 238 (746)
T ss_pred HHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee
Confidence 333333224447899999998 7777777776666555
No 38
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.32 E-value=1.9e-11 Score=135.85 Aligned_cols=161 Identities=19% Similarity=0.203 Sum_probs=109.9
Q ss_pred CccCCcHHHHHHHHHHHHHHhcCC-CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhc
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRKGI-AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWC 241 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~~~-~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~ 241 (520)
+.-.|.++|..++..+......+. ...||..++|+|||+.++..+.... ..+..+||++|+. |..|+.+.+.+++
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~---~~g~q~lilaPT~~LA~Q~~~~l~~l~ 334 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAI---EAGYQAALMAPTEILAEQHYENLKKLL 334 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEeccHHHHHHHHHHHHHHH
Confidence 344799999999999886544321 1369999999999998765543332 2356799999975 5677999999988
Q ss_pred CC--CeEEEecCCCchhhhHH-HHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch
Q 039292 242 PS--FSVLQYHGAGRTAYSRE-LSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 242 p~--~~v~~~~g~~~~~~~~~-~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
+. +++.+++|......... +..+.. +..+|+|+|+..+... +.-.+.++||+||+|++. .
T Consensus 335 ~~~~i~v~ll~G~~~~~~r~~~~~~l~~----g~~~IvVgT~~ll~~~----------v~~~~l~lvVIDE~Hrfg---~ 397 (681)
T PRK10917 335 EPLGIRVALLTGSLKGKERREILEAIAS----GEADIVIGTHALIQDD----------VEFHNLGLVIIDEQHRFG---V 397 (681)
T ss_pred hhcCcEEEEEcCCCCHHHHHHHHHHHhC----CCCCEEEchHHHhccc----------chhcccceEEEechhhhh---H
Confidence 65 77888888765433322 222222 2479999999877531 122357899999999983 2
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCCCC
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQND 345 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~n~ 345 (520)
.....+.... ...+.++|||||+...
T Consensus 398 ~qr~~l~~~~-~~~~iL~~SATp~prt 423 (681)
T PRK10917 398 EQRLALREKG-ENPHVLVMTATPIPRT 423 (681)
T ss_pred HHHHHHHhcC-CCCCEEEEeCCCCHHH
Confidence 2233333321 3578999999998654
No 39
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.31 E-value=2.4e-11 Score=129.80 Aligned_cols=158 Identities=19% Similarity=0.231 Sum_probs=103.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHH-HHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc--
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAIT-YLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC-- 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia-~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~-- 241 (520)
..+.|+|..++..++ .| ..+|+..+||+|||...+. ++..+ ........+||+||+ .+..||.+++..+.
T Consensus 25 ~~~t~iQ~~ai~~~l----~g-~dvi~~a~TGsGKT~a~~lpil~~l-~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~ 98 (460)
T PRK11776 25 TEMTPIQAQSLPAIL----AG-KDVIAQAKTGSGKTAAFGLGLLQKL-DVKRFRVQALVLCPTRELADQVAKEIRRLARF 98 (460)
T ss_pred CCCCHHHHHHHHHHh----cC-CCEEEECCCCCcHHHHHHHHHHHHh-hhccCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 368899999999887 44 4579999999999976433 33333 212223358999996 46688999888764
Q ss_pred -CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--h
Q 039292 242 -PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN--S 318 (520)
Q Consensus 242 -p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~--s 318 (520)
++.++..++|....... ...+. ...+|+|+|++.+..+... ..+.-..+++||+||||++.+.. .
T Consensus 99 ~~~~~v~~~~Gg~~~~~~--~~~l~-----~~~~IvV~Tp~rl~~~l~~-----~~~~l~~l~~lViDEad~~l~~g~~~ 166 (460)
T PRK11776 99 IPNIKVLTLCGGVPMGPQ--IDSLE-----HGAHIIVGTPGRILDHLRK-----GTLDLDALNTLVLDEADRMLDMGFQD 166 (460)
T ss_pred CCCcEEEEEECCCChHHH--HHHhc-----CCCCEEEEChHHHHHHHHc-----CCccHHHCCEEEEECHHHHhCcCcHH
Confidence 46777777765433221 11111 2569999999999775422 12223467899999999986432 1
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCC
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
.....+..+ ....+.+++|||+-
T Consensus 167 ~l~~i~~~~-~~~~q~ll~SAT~~ 189 (460)
T PRK11776 167 AIDAIIRQA-PARRQTLLFSATYP 189 (460)
T ss_pred HHHHHHHhC-CcccEEEEEEecCc
Confidence 222222222 24456899999984
No 40
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.31 E-value=3.2e-11 Score=127.85 Aligned_cols=167 Identities=13% Similarity=0.151 Sum_probs=105.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHH-HHHHHh---CCCCCCEEEEeCCc-chhhHHHHHHHhc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYL-MLLKHL---NNDPGPHLIVCPAS-VLENWERELKKWC 241 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l-~~l~~~---~~~~~~~LIV~P~s-ll~~W~~E~~~~~ 241 (520)
.+.++|..++..++ .| ..+|+..++|+|||+.++..+ ..+... ......+||++|+. +..|+.+.+..+.
T Consensus 23 ~p~~iQ~~ai~~~~----~g-~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 23 RPTAIQAEAIPPAL----DG-RDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCHHHHHHHHHHh----CC-CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 57899999999887 34 457999999999998754333 333221 12235789999965 5677888777765
Q ss_pred C--CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-h
Q 039292 242 P--SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-S 318 (520)
Q Consensus 242 p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-s 318 (520)
. ++.+..++|.......... .....+|+|+|++.+..... ...+....+++||+||||++.... .
T Consensus 98 ~~~~~~v~~~~gg~~~~~~~~~-------l~~~~~IlV~Tp~rl~~~~~-----~~~~~~~~v~~lViDEah~~l~~~~~ 165 (434)
T PRK11192 98 KHTHLDIATITGGVAYMNHAEV-------FSENQDIVVATPGRLLQYIK-----EENFDCRAVETLILDEADRMLDMGFA 165 (434)
T ss_pred ccCCcEEEEEECCCCHHHHHHH-------hcCCCCEEEEChHHHHHHHH-----cCCcCcccCCEEEEECHHHHhCCCcH
Confidence 3 4677777765433222111 11246899999998876432 122334467899999999986432 1
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCCCCHHHHH
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQNDLHELW 350 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~ 350 (520)
.....+........+.+++|||+-...+.++.
T Consensus 166 ~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~ 197 (434)
T PRK11192 166 QDIETIAAETRWRKQTLLFSATLEGDAVQDFA 197 (434)
T ss_pred HHHHHHHHhCccccEEEEEEeecCHHHHHHHH
Confidence 22222222222345679999999654455543
No 41
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=3.9e-11 Score=128.29 Aligned_cols=173 Identities=19% Similarity=0.182 Sum_probs=111.0
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~ 244 (520)
..++|+|.+++..++ .+ +.+++..+||+|||+..+.-+ +. ..+.+|||+|. .|+.+|...+.... .
T Consensus 10 ~~~r~~Q~~ai~~~l----~g-~dvlv~apTGsGKTl~y~lp~--l~----~~~~~lVi~P~~~L~~dq~~~l~~~g--i 76 (470)
T TIGR00614 10 SSFRPVQLEVINAVL----LG-RDCFVVMPTGGGKSLCYQLPA--LC----SDGITLVISPLISLMEDQVLQLKASG--I 76 (470)
T ss_pred CCCCHHHHHHHHHHH----cC-CCEEEEcCCCCcHhHHHHHHH--HH----cCCcEEEEecHHHHHHHHHHHHHHcC--C
Confidence 368999999999887 44 357999999999997543222 21 24678999996 56677888888653 4
Q ss_pred eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHH-hhcCccEEEEeCccccCCcch---HH
Q 039292 245 SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKIL-KRWRWSCVLMDEAHALKDKNS---YR 320 (520)
Q Consensus 245 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l-~~~~~~~vIiDEaH~ikn~~s---~~ 320 (520)
.+..+.+.........+.... ..+.++++++|++.+..... ....+ ....+.+|||||||++..... ..
T Consensus 77 ~~~~l~~~~~~~~~~~i~~~~---~~~~~~il~~TPe~l~~~~~----~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~ 149 (470)
T TIGR00614 77 PATFLNSSQSKEQQKNVLTDL---KDGKIKLLYVTPEKCSASNR----LLQTLEERKGITLIAVDEAHCISQWGHDFRPD 149 (470)
T ss_pred cEEEEeCCCCHHHHHHHHHHH---hcCCCCEEEECHHHHcCchh----HHHHHHhcCCcCEEEEeCCcccCccccccHHH
Confidence 555566654433222221111 12357999999999865211 12223 455789999999999864221 12
Q ss_pred HHHHHHHh--hhcCcEEEEeccCCCCCHHHHHHHHHHhCC
Q 039292 321 WKNLMSVA--RNANQRLMLTGTPLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 321 ~~~l~~l~--~~~~~rl~LTgTPi~n~~~el~~ll~fl~p 358 (520)
+..+..+. ....+.++|||||-.....++...+.+-.|
T Consensus 150 ~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~ 189 (470)
T TIGR00614 150 YKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNP 189 (470)
T ss_pred HHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCC
Confidence 22222221 135568999999988777777776655444
No 42
>PTZ00424 helicase 45; Provisional
Probab=99.27 E-value=3.2e-11 Score=126.47 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=98.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCC--
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPS-- 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~-- 243 (520)
.+.|+|..++..+. .+ ..+|+..+||+|||+.++..+............+|||+|.. +..|+.+.+..++..
T Consensus 50 ~~~~~Q~~ai~~i~----~~-~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~ 124 (401)
T PTZ00424 50 KPSAIQQRGIKPIL----DG-YDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLK 124 (401)
T ss_pred CCCHHHHHHHHHHh----CC-CCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcC
Confidence 68999999999887 44 35689999999999876543333222223456799999965 556677777766543
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--hHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN--SYRW 321 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~--s~~~ 321 (520)
..+....|..... .....+. ...+|+|+|++.+..... ...+....+++||+||||++.... ....
T Consensus 125 ~~~~~~~g~~~~~--~~~~~~~-----~~~~Ivv~Tp~~l~~~l~-----~~~~~l~~i~lvViDEah~~~~~~~~~~~~ 192 (401)
T PTZ00424 125 VRCHACVGGTVVR--DDINKLK-----AGVHMVVGTPGRVYDMID-----KRHLRVDDLKLFILDEADEMLSRGFKGQIY 192 (401)
T ss_pred ceEEEEECCcCHH--HHHHHHc-----CCCCEEEECcHHHHHHHH-----hCCcccccccEEEEecHHHHHhcchHHHHH
Confidence 3333334433221 1111111 235899999998865432 112233467899999999985422 2233
Q ss_pred HHHHHHhhhcCcEEEEeccCC
Q 039292 322 KNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi 342 (520)
..+..+. ...+.+++|||+-
T Consensus 193 ~i~~~~~-~~~~~i~~SAT~~ 212 (401)
T PTZ00424 193 DVFKKLP-PDVQVALFSATMP 212 (401)
T ss_pred HHHhhCC-CCcEEEEEEecCC
Confidence 3333331 3456899999974
No 43
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.25 E-value=1.2e-10 Score=132.02 Aligned_cols=160 Identities=16% Similarity=0.181 Sum_probs=105.4
Q ss_pred cCCcHHHHHHHHHHHHHHhcCC-CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGI-AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPS 243 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~-~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~ 243 (520)
-.+.|+|..++..+......+. ..+|++.++|+|||..++..+..... .+..++|+||+. |..|+...|.+++..
T Consensus 450 f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~---~g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 450 FEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL---DGKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH---hCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 3688999999999986543331 24699999999999887644332211 346799999975 567799999988764
Q ss_pred --CeEEEecCCCchhhhH-HHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHH
Q 039292 244 --FSVLQYHGAGRTAYSR-ELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYR 320 (520)
Q Consensus 244 --~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~ 320 (520)
+++..++|........ .+..+.. +..+|+|+|+..+... +.-.+..+||+||+|++.. ..
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~~l~~----g~~dIVIGTp~ll~~~----------v~f~~L~llVIDEahrfgv---~~ 589 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILKELAS----GKIDILIGTHKLLQKD----------VKFKDLGLLIIDEEQRFGV---KQ 589 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHHHHHc----CCceEEEchHHHhhCC----------CCcccCCEEEeecccccch---hH
Confidence 4556666654332222 2222222 2468999999655321 1223578999999999732 23
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCCCH
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQNDL 346 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n~~ 346 (520)
...+..+. ...+.++|||||+...+
T Consensus 590 ~~~L~~~~-~~~~vL~~SATpiprtl 614 (926)
T TIGR00580 590 KEKLKELR-TSVDVLTLSATPIPRTL 614 (926)
T ss_pred HHHHHhcC-CCCCEEEEecCCCHHHH
Confidence 34444442 45679999999987554
No 44
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.24 E-value=1.5e-10 Score=127.46 Aligned_cols=171 Identities=18% Similarity=0.217 Sum_probs=113.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCCe
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSFS 245 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~ 245 (520)
.++|+|.+++..++ .| ..++++.+||+|||+.....+ +. ..+.+|||+|. +++.++...+... +..
T Consensus 13 ~fr~~Q~~~i~~il----~g-~dvlv~~PTG~GKTl~y~lpa--l~----~~g~~lVisPl~sL~~dq~~~l~~~--gi~ 79 (591)
T TIGR01389 13 DFRPGQEEIISHVL----DG-RDVLVVMPTGGGKSLCYQVPA--LL----LKGLTVVISPLISLMKDQVDQLRAA--GVA 79 (591)
T ss_pred CCCHHHHHHHHHHH----cC-CCEEEEcCCCccHhHHHHHHH--HH----cCCcEEEEcCCHHHHHHHHHHHHHc--CCc
Confidence 69999999999887 44 467999999999998764332 21 24678999995 5678898888875 455
Q ss_pred EEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc---hHHHH
Q 039292 246 VLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN---SYRWK 322 (520)
Q Consensus 246 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~---s~~~~ 322 (520)
+..+++.........+.... ..+..+++++|++.+.... ....+....+++|||||||.+.... -..+.
T Consensus 80 ~~~~~s~~~~~~~~~~~~~l---~~~~~~il~~tpe~l~~~~-----~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~ 151 (591)
T TIGR01389 80 AAYLNSTLSAKEQQDIEKAL---VNGELKLLYVAPERLEQDY-----FLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQ 151 (591)
T ss_pred EEEEeCCCCHHHHHHHHHHH---hCCCCCEEEEChhHhcChH-----HHHHHhcCCCCEEEEeCCcccccccCccHHHHH
Confidence 66666654433222221111 1235789999999886422 3445666789999999999985321 11223
Q ss_pred HHHHHhh--hcCcEEEEeccCCCCCHHHHHHHHHHhCC
Q 039292 323 NLMSVAR--NANQRLMLTGTPLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 323 ~l~~l~~--~~~~rl~LTgTPi~n~~~el~~ll~fl~p 358 (520)
.+..+.. .....++||||+-.....++...+.+-.+
T Consensus 152 ~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~ 189 (591)
T TIGR01389 152 RLGSLAERFPQVPRIALTATADAETRQDIRELLRLADA 189 (591)
T ss_pred HHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCC
Confidence 3333221 24458999999988877777776654433
No 45
>PRK02362 ski2-like helicase; Provisional
Probab=99.23 E-value=1.4e-10 Score=130.53 Aligned_cols=161 Identities=20% Similarity=0.162 Sum_probs=105.8
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHH-HHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC-
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITY-LMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP- 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~-l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p- 242 (520)
..|+|+|.+++..++. .+ ..+|++.+||+|||+.+... +..+. ..+++|+|+|. .++.++.++|.++.+
T Consensus 22 ~~l~p~Q~~ai~~~~~---~g-~nvlv~APTGSGKTlia~lail~~l~----~~~kal~i~P~raLa~q~~~~~~~~~~~ 93 (737)
T PRK02362 22 EELYPPQAEAVEAGLL---DG-KNLLAAIPTASGKTLIAELAMLKAIA----RGGKALYIVPLRALASEKFEEFERFEEL 93 (737)
T ss_pred CcCCHHHHHHHHHHHh---CC-CcEEEECCCcchHHHHHHHHHHHHHh----cCCcEEEEeChHHHHHHHHHHHHHhhcC
Confidence 3699999999976432 34 45799999999999987543 33332 45789999995 677889999888753
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-hHHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-SYRW 321 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-s~~~ 321 (520)
+.++..++|....... .....+|+|+|++.+...... ...++ ...++||+||+|.+.+.. ....
T Consensus 94 g~~v~~~tGd~~~~~~----------~l~~~~IiV~Tpek~~~llr~---~~~~l--~~v~lvViDE~H~l~d~~rg~~l 158 (737)
T PRK02362 94 GVRVGISTGDYDSRDE----------WLGDNDIIVATSEKVDSLLRN---GAPWL--DDITCVVVDEVHLIDSANRGPTL 158 (737)
T ss_pred CCEEEEEeCCcCcccc----------ccCCCCEEEECHHHHHHHHhc---Chhhh--hhcCEEEEECccccCCCcchHHH
Confidence 6788888886432211 112469999999988654321 11112 257999999999996532 2222
Q ss_pred HH-HHHHh--hhcCcEEEEeccCCCCCHHHHHH
Q 039292 322 KN-LMSVA--RNANQRLMLTGTPLQNDLHELWS 351 (520)
Q Consensus 322 ~~-l~~l~--~~~~~rl~LTgTPi~n~~~el~~ 351 (520)
.. +..+. ....+.++||||.- +..++..
T Consensus 159 e~il~rl~~~~~~~qii~lSATl~--n~~~la~ 189 (737)
T PRK02362 159 EVTLAKLRRLNPDLQVVALSATIG--NADELAD 189 (737)
T ss_pred HHHHHHHHhcCCCCcEEEEcccCC--CHHHHHH
Confidence 22 22221 13457899999974 4555543
No 46
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.23 E-value=1.4e-10 Score=127.33 Aligned_cols=158 Identities=17% Similarity=0.181 Sum_probs=103.4
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHH-HHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc--
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAI-TYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC-- 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~ai-a~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~-- 241 (520)
..+.|+|..++..++ .+ +.+|+..+||+|||+..+ .++..+.. ......+||+||+ .|..||..++..|.
T Consensus 27 ~~ptpiQ~~ai~~ll----~g-~dvl~~ApTGsGKT~af~lpll~~l~~-~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~ 100 (629)
T PRK11634 27 EKPSPIQAECIPHLL----NG-RDVLGMAQTGSGKTAAFSLPLLHNLDP-ELKAPQILVLAPTRELAVQVAEAMTDFSKH 100 (629)
T ss_pred CCCCHHHHHHHHHHH----cC-CCEEEEcCCCCcHHHHHHHHHHHHhhh-ccCCCeEEEEeCcHHHHHHHHHHHHHHHhh
Confidence 368899999999887 34 457999999999998753 33433322 2234468999996 46688998887764
Q ss_pred -CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--h
Q 039292 242 -PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN--S 318 (520)
Q Consensus 242 -p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~--s 318 (520)
+++.++.++|...... .+..+. ...+|+|+|++.+..+.. ...+.-..+.+|||||||.+-+.. .
T Consensus 101 ~~~i~v~~~~gG~~~~~--q~~~l~-----~~~~IVVgTPgrl~d~l~-----r~~l~l~~l~~lVlDEAd~ml~~gf~~ 168 (629)
T PRK11634 101 MRGVNVVALYGGQRYDV--QLRALR-----QGPQIVVGTPGRLLDHLK-----RGTLDLSKLSGLVLDEADEMLRMGFIE 168 (629)
T ss_pred cCCceEEEEECCcCHHH--HHHHhc-----CCCCEEEECHHHHHHHHH-----cCCcchhhceEEEeccHHHHhhcccHH
Confidence 5677777666543221 122211 246899999999876542 122333467889999999875432 2
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCC
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
.....+..+ ....+.+++|||.-
T Consensus 169 di~~Il~~l-p~~~q~llfSAT~p 191 (629)
T PRK11634 169 DVETIMAQI-PEGHQTALFSATMP 191 (629)
T ss_pred HHHHHHHhC-CCCCeEEEEEccCC
Confidence 233333333 24456799999963
No 47
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.22 E-value=3.3e-10 Score=110.71 Aligned_cols=242 Identities=18% Similarity=0.144 Sum_probs=143.5
Q ss_pred ccCCcHHHHHHHHHHHHHHhc-----CCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 165 QPVLKPYQLVGVNFLLLLYRK-----GIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~-----~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
...|-+-|+++|-+....... ...|.+|+|.+|.||.-|+.++|..... .+..+++.|-+...|...-.+.+..
T Consensus 35 ~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l-~Gr~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 35 SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWL-RGRKRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHH-cCCCceEEEECChhhhhHHHHHHHH
Confidence 357889999999998766553 2368999999999999999888865533 4444455555556666666677765
Q ss_pred hcC-CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhh------cCc-cEEEEeCcc
Q 039292 240 WCP-SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKR------WRW-SCVLMDEAH 311 (520)
Q Consensus 240 ~~p-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~------~~~-~~vIiDEaH 311 (520)
... .+.+..+........ .....+|+++||.+|.............+.. ..| .+||+||||
T Consensus 114 IG~~~i~v~~l~~~~~~~~-----------~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH 182 (303)
T PF13872_consen 114 IGADNIPVHPLNKFKYGDI-----------IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECH 182 (303)
T ss_pred hCCCcccceechhhccCcC-----------CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccch
Confidence 542 222222222111100 1124589999999998764321111222221 123 488899999
Q ss_pred ccCCcch------HHHHHHHHHhh--hcCcEEEEeccCCCC--CHHHHHHHHHHhCC-CCCCChHHHHHHhhcCCchHHH
Q 039292 312 ALKDKNS------YRWKNLMSVAR--NANQRLMLTGTPLQN--DLHELWSLLEFMMP-DLFATEDVDLKKLLNGEDRDLI 380 (520)
Q Consensus 312 ~ikn~~s------~~~~~l~~l~~--~~~~rl~LTgTPi~n--~~~el~~ll~fl~p-~~~~~~~~~~~~~~~~~~~~~~ 380 (520)
+.+|..+ ++..++..+.. ...+.+..|||...+ |+. ++.-+.+-.+ ..|.+...|...+..+. ...+
T Consensus 183 ~akn~~~~~~~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~Nma-Ym~RLGLWG~gtpf~~~~~f~~a~~~gG-v~am 260 (303)
T PF13872_consen 183 KAKNLSSGSKKPSKTGIAVLELQNRLPNARVVYASATGASEPRNMA-YMSRLGLWGPGTPFPDFDDFLEAMEKGG-VGAM 260 (303)
T ss_pred hcCCCCccCccccHHHHHHHHHHHhCCCCcEEEecccccCCCceee-eeeeccccCCCCCCCCHHHHHHHHHhcC-chHH
Confidence 9998644 55566555532 234578899999843 221 1111111122 13555566665554432 2223
Q ss_pred HHHHHhh--cchhhheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHH
Q 039292 381 GRMKSIL--GPFILRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRV 425 (520)
Q Consensus 381 ~~L~~~l--~~~~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~ 425 (520)
+-+..-| ....++|..+ +-.....++.++||+.|.++|+.
T Consensus 261 E~vA~dlKa~G~yiaR~LS-----f~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 261 EMVAMDLKARGMYIARQLS-----FEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred HHHHHHHHhcchheeeecc-----cCCceEEEEEecCCHHHHHHhcC
Confidence 3322222 3445666543 44556788999999999999985
No 48
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.22 E-value=2.5e-10 Score=125.60 Aligned_cols=170 Identities=17% Similarity=0.191 Sum_probs=110.2
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCCe
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSFS 245 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~ 245 (520)
.++|+|.+++..++ .| +.+|+..+||+|||+..+..+ +. ..+.+|||+|. +++.+|...+... +..
T Consensus 25 ~~r~~Q~~ai~~il----~g-~dvlv~apTGsGKTl~y~lpa--l~----~~g~tlVisPl~sL~~dqv~~l~~~--gi~ 91 (607)
T PRK11057 25 QFRPGQQEIIDAVL----SG-RDCLVVMPTGGGKSLCYQIPA--LV----LDGLTLVVSPLISLMKDQVDQLLAN--GVA 91 (607)
T ss_pred CCCHHHHHHHHHHH----cC-CCEEEEcCCCchHHHHHHHHH--HH----cCCCEEEEecHHHHHHHHHHHHHHc--CCc
Confidence 68999999999887 44 457999999999998654222 21 24579999995 5667788888775 344
Q ss_pred EEEecCCCchhhhHH-HHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc---hHHH
Q 039292 246 VLQYHGAGRTAYSRE-LSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN---SYRW 321 (520)
Q Consensus 246 v~~~~g~~~~~~~~~-~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~---s~~~ 321 (520)
...+++......... ..... .+...++++|++.+.... ....+...++++|||||||.+.... ...+
T Consensus 92 ~~~~~s~~~~~~~~~~~~~~~----~g~~~il~~tPe~l~~~~-----~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y 162 (607)
T PRK11057 92 AACLNSTQTREQQLEVMAGCR----TGQIKLLYIAPERLMMDN-----FLEHLAHWNPALLAVDEAHCISQWGHDFRPEY 162 (607)
T ss_pred EEEEcCCCCHHHHHHHHHHHh----CCCCcEEEEChHHhcChH-----HHHHHhhCCCCEEEEeCccccccccCcccHHH
Confidence 555555443322211 11111 235689999999886421 2344556678999999999986421 1122
Q ss_pred HHHHHHhh--hcCcEEEEeccCCCCCHHHHHHHHHHhCC
Q 039292 322 KNLMSVAR--NANQRLMLTGTPLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 322 ~~l~~l~~--~~~~rl~LTgTPi~n~~~el~~ll~fl~p 358 (520)
..+..+.. .....++||||+-.....++...+.+-.|
T Consensus 163 ~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~ 201 (607)
T PRK11057 163 AALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201 (607)
T ss_pred HHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCe
Confidence 33333311 34568999999988777777776654433
No 49
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.21 E-value=1.2e-10 Score=124.06 Aligned_cols=159 Identities=18% Similarity=0.183 Sum_probs=99.7
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHH-HHHHHHhC-----CCCCCEEEEeCC-cchhhHHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITY-LMLLKHLN-----NDPGPHLIVCPA-SVLENWERELK 238 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~-l~~l~~~~-----~~~~~~LIV~P~-sll~~W~~E~~ 238 (520)
..+.|+|..++..++ .+ ..+|+..+||+|||+..+.. +..+.... .....+|||||+ .|..||.+.+.
T Consensus 22 ~~pt~iQ~~ai~~il----~g-~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~ 96 (456)
T PRK10590 22 REPTPIQQQAIPAVL----EG-RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVR 96 (456)
T ss_pred CCCCHHHHHHHHHHh----CC-CCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHH
Confidence 368899999999887 34 46899999999999875443 33332211 112258999996 46688999998
Q ss_pred HhcC--CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc
Q 039292 239 KWCP--SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK 316 (520)
Q Consensus 239 ~~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~ 316 (520)
.+.. .+.+..+.|...... ....+ ....+|+|+|++.+...... ..+.....++|||||||++...
T Consensus 97 ~~~~~~~~~~~~~~gg~~~~~--~~~~l-----~~~~~IiV~TP~rL~~~~~~-----~~~~l~~v~~lViDEah~ll~~ 164 (456)
T PRK10590 97 DYSKYLNIRSLVVFGGVSINP--QMMKL-----RGGVDVLVATPGRLLDLEHQ-----NAVKLDQVEILVLDEADRMLDM 164 (456)
T ss_pred HHhccCCCEEEEEECCcCHHH--HHHHH-----cCCCcEEEEChHHHHHHHHc-----CCcccccceEEEeecHHHHhcc
Confidence 8764 344554544432221 11111 12569999999998764321 1223346789999999998643
Q ss_pred ch--HHHHHHHHHhhhcCcEEEEeccCC
Q 039292 317 NS--YRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 317 ~s--~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
.- .....+..+ ....+.+++|||+-
T Consensus 165 ~~~~~i~~il~~l-~~~~q~l~~SAT~~ 191 (456)
T PRK10590 165 GFIHDIRRVLAKL-PAKRQNLLFSATFS 191 (456)
T ss_pred ccHHHHHHHHHhC-CccCeEEEEeCCCc
Confidence 21 112222222 23456799999974
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=99.21 E-value=2.3e-10 Score=127.85 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=102.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC-CC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP-SF 244 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p-~~ 244 (520)
.|+|+|.+++..+. .+ ..+|++.+||+|||+++...+..... ..+++++|+|. .+..++.+++.++.. +.
T Consensus 22 ~l~~~Q~~ai~~l~----~~-~nvlv~apTGSGKTl~a~lail~~l~---~~~k~v~i~P~raLa~q~~~~~~~l~~~g~ 93 (674)
T PRK01172 22 ELYDHQRMAIEQLR----KG-ENVIVSVPTAAGKTLIAYSAIYETFL---AGLKSIYIVPLRSLAMEKYEELSRLRSLGM 93 (674)
T ss_pred CCCHHHHHHHHHHh----cC-CcEEEECCCCchHHHHHHHHHHHHHH---hCCcEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 58999999998764 34 45799999999999987655433322 24678999995 566788888887643 46
Q ss_pred eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-hHHHHH
Q 039292 245 SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-SYRWKN 323 (520)
Q Consensus 245 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-s~~~~~ 323 (520)
.+....|....... .+ ...+|+|+|++.+...... .... -.++++||+||+|.+.... ......
T Consensus 94 ~v~~~~G~~~~~~~-~~---------~~~dIiv~Tpek~~~l~~~---~~~~--l~~v~lvViDEaH~l~d~~rg~~le~ 158 (674)
T PRK01172 94 RVKISIGDYDDPPD-FI---------KRYDVVILTSEKADSLIHH---DPYI--INDVGLIVADEIHIIGDEDRGPTLET 158 (674)
T ss_pred eEEEEeCCCCCChh-hh---------ccCCEEEECHHHHHHHHhC---ChhH--HhhcCEEEEecchhccCCCccHHHHH
Confidence 66666665432211 11 1469999999987654321 1112 2357899999999996422 222232
Q ss_pred HHH-Hh--hhcCcEEEEeccCCCCCHHHHH
Q 039292 324 LMS-VA--RNANQRLMLTGTPLQNDLHELW 350 (520)
Q Consensus 324 l~~-l~--~~~~~rl~LTgTPi~n~~~el~ 350 (520)
+.. +. ....+.++||||+- +..++-
T Consensus 159 ll~~~~~~~~~~riI~lSATl~--n~~~la 186 (674)
T PRK01172 159 VLSSARYVNPDARILALSATVS--NANELA 186 (674)
T ss_pred HHHHHHhcCcCCcEEEEeCccC--CHHHHH
Confidence 222 11 13456799999973 345543
No 51
>COG4889 Predicted helicase [General function prediction only]
Probab=99.21 E-value=2.3e-11 Score=130.06 Aligned_cols=172 Identities=20% Similarity=0.170 Sum_probs=109.1
Q ss_pred CCCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHH
Q 039292 160 EDSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELK 238 (520)
Q Consensus 160 ~~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~ 238 (520)
++..-..++||||..|+....+.+..+-+| =|-..+|+|||.+++-+...+.. .++|.++|. +|+.|-.+|..
T Consensus 154 l~l~~~kk~R~hQq~Aid~a~~~F~~n~RG-kLIMAcGTGKTfTsLkisEala~-----~~iL~LvPSIsLLsQTlrew~ 227 (1518)
T COG4889 154 LPLKKPKKPRPHQQTAIDAAKEGFSDNDRG-KLIMACGTGKTFTSLKISEALAA-----ARILFLVPSISLLSQTLREWT 227 (1518)
T ss_pred cccCCCCCCChhHHHHHHHHHhhcccccCC-cEEEecCCCccchHHHHHHHHhh-----hheEeecchHHHHHHHHHHHh
Confidence 344456789999999999999888877666 66677999999999998877643 679999995 67777554433
Q ss_pred Hhc-CCCeEEEecCCC---c---------------hhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhh
Q 039292 239 KWC-PSFSVLQYHGAG---R---------------TAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKR 299 (520)
Q Consensus 239 ~~~-p~~~v~~~~g~~---~---------------~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~ 299 (520)
.-. -.++....+... + ......+..+.......+.-||++||+.+.... ......-
T Consensus 228 ~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~-----eAQe~G~ 302 (1518)
T COG4889 228 AQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIK-----EAQEAGL 302 (1518)
T ss_pred hccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHH-----HHHHcCC
Confidence 211 122222222211 1 112223344444444556789999999987633 2233344
Q ss_pred cCccEEEEeCccccCC------cchHHHHHHHHHhhhcCcEEEEeccCC
Q 039292 300 WRWSCVLMDEAHALKD------KNSYRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 300 ~~~~~vIiDEaH~ikn------~~s~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
-.|++||||||||--+ ..|...+....-..++..|+.|||||-
T Consensus 303 ~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPk 351 (1518)
T COG4889 303 DEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPK 351 (1518)
T ss_pred CCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCch
Confidence 5799999999998643 112111111111116778999999994
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.21 E-value=1.9e-10 Score=133.07 Aligned_cols=161 Identities=16% Similarity=0.214 Sum_probs=106.0
Q ss_pred ccCCcHHHHHHHHHHHHHHhcC-CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKG-IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCP 242 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~-~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p 242 (520)
.-.+.+.|..++.-+......+ ...+|++.+||+|||.+++-.+.... ..+..+||+||+.. ..|..+.|.+++.
T Consensus 598 ~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~---~~g~qvlvLvPT~eLA~Q~~~~f~~~~~ 674 (1147)
T PRK10689 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV---ENHKQVAVLVPTTLLAQQHYDNFRDRFA 674 (1147)
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHH---HcCCeEEEEeCcHHHHHHHHHHHHHhhc
Confidence 3478999999999887644322 13579999999999998764332221 24568999999765 4778888887664
Q ss_pred C--CeEEEecCCCchhhhHH-HHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchH
Q 039292 243 S--FSVLQYHGAGRTAYSRE-LSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSY 319 (520)
Q Consensus 243 ~--~~v~~~~g~~~~~~~~~-~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~ 319 (520)
. +++.++.|......... +..+.. +..+|+|+|++.+... +...++++|||||+|++...
T Consensus 675 ~~~v~i~~l~g~~s~~e~~~il~~l~~----g~~dIVVgTp~lL~~~----------v~~~~L~lLVIDEahrfG~~--- 737 (1147)
T PRK10689 675 NWPVRIEMLSRFRSAKEQTQILAEAAE----GKIDILIGTHKLLQSD----------VKWKDLGLLIVDEEHRFGVR--- 737 (1147)
T ss_pred cCCceEEEEECCCCHHHHHHHHHHHHh----CCCCEEEECHHHHhCC----------CCHhhCCEEEEechhhcchh---
Confidence 3 45666666544333222 222221 2468999999866431 12236889999999998422
Q ss_pred HHHHHHHHhhhcCcEEEEeccCCCCCH
Q 039292 320 RWKNLMSVARNANQRLMLTGTPLQNDL 346 (520)
Q Consensus 320 ~~~~l~~l~~~~~~rl~LTgTPi~n~~ 346 (520)
....+..+. ...+.+++||||++..+
T Consensus 738 ~~e~lk~l~-~~~qvLl~SATpiprtl 763 (1147)
T PRK10689 738 HKERIKAMR-ADVDILTLTATPIPRTL 763 (1147)
T ss_pred HHHHHHhcC-CCCcEEEEcCCCCHHHH
Confidence 233344332 45679999999987654
No 53
>PTZ00110 helicase; Provisional
Probab=99.20 E-value=1.5e-10 Score=125.67 Aligned_cols=157 Identities=21% Similarity=0.264 Sum_probs=98.8
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHH-HHHHHHHHhC----CCCCCEEEEeCCc-chhhHHHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAI-TYLMLLKHLN----NDPGPHLIVCPAS-VLENWERELKK 239 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~ai-a~l~~l~~~~----~~~~~~LIV~P~s-ll~~W~~E~~~ 239 (520)
..+.|+|..++..++ .| +.+|+..+||+|||+..+ ..+..+.... .....+|||||+. |..|+..++.+
T Consensus 151 ~~pt~iQ~~aip~~l----~G-~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~ 225 (545)
T PTZ00110 151 TEPTPIQVQGWPIAL----SG-RDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNK 225 (545)
T ss_pred CCCCHHHHHHHHHHh----cC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHH
Confidence 368899999998877 45 468999999999998753 2333332211 1223479999964 56789999998
Q ss_pred hcCC--CeEE-EecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc
Q 039292 240 WCPS--FSVL-QYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK 316 (520)
Q Consensus 240 ~~p~--~~v~-~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~ 316 (520)
+... +++. +|.|.........+. ...+|+|+|++.+...... ..+.-..+.+|||||||++...
T Consensus 226 ~~~~~~i~~~~~~gg~~~~~q~~~l~--------~~~~IlVaTPgrL~d~l~~-----~~~~l~~v~~lViDEAd~mld~ 292 (545)
T PTZ00110 226 FGASSKIRNTVAYGGVPKRGQIYALR--------RGVEILIACPGRLIDFLES-----NVTNLRRVTYLVLDEADRMLDM 292 (545)
T ss_pred HhcccCccEEEEeCCCCHHHHHHHHH--------cCCCEEEECHHHHHHHHHc-----CCCChhhCcEEEeehHHhhhhc
Confidence 8754 3444 444444332222221 1469999999988764321 1122235789999999998653
Q ss_pred c--hHHHHHHHHHhhhcCcEEEEeccC
Q 039292 317 N--SYRWKNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 317 ~--s~~~~~l~~l~~~~~~rl~LTgTP 341 (520)
. ....+.+..+ ....+.+++|||.
T Consensus 293 gf~~~i~~il~~~-~~~~q~l~~SAT~ 318 (545)
T PTZ00110 293 GFEPQIRKIVSQI-RPDRQTLMWSATW 318 (545)
T ss_pred chHHHHHHHHHhC-CCCCeEEEEEeCC
Confidence 2 1222222222 2445679999996
No 54
>PRK00254 ski2-like helicase; Provisional
Probab=99.20 E-value=2.6e-10 Score=128.08 Aligned_cols=161 Identities=20% Similarity=0.185 Sum_probs=105.9
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHH-HHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC-
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQA-ITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP- 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~a-ia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p- 242 (520)
..|.|+|..++.-.+ ..+ ..+|++.+||+|||+.+ ++++..+. ...+++|+|+|. .++.++.+++..|..
T Consensus 22 ~~l~~~Q~~ai~~~~---~~g-~nvlv~apTGsGKT~~~~l~il~~l~---~~~~~~l~l~P~~aLa~q~~~~~~~~~~~ 94 (720)
T PRK00254 22 EELYPPQAEALKSGV---LEG-KNLVLAIPTASGKTLVAEIVMVNKLL---REGGKAVYLVPLKALAEEKYREFKDWEKL 94 (720)
T ss_pred CCCCHHHHHHHHHHH---hCC-CcEEEECCCCcHHHHHHHHHHHHHHH---hcCCeEEEEeChHHHHHHHHHHHHHHhhc
Confidence 468999999997422 134 45799999999999988 44444432 235689999996 566778888887643
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc--chHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK--NSYR 320 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~--~s~~ 320 (520)
+.++..++|....... . ....+|+|+|++.+...... ...++ .+.++||+||+|.+... ....
T Consensus 95 g~~v~~~~Gd~~~~~~-~---------~~~~~IiV~Tpe~~~~ll~~---~~~~l--~~l~lvViDE~H~l~~~~rg~~l 159 (720)
T PRK00254 95 GLRVAMTTGDYDSTDE-W---------LGKYDIIIATAEKFDSLLRH---GSSWI--KDVKLVVADEIHLIGSYDRGATL 159 (720)
T ss_pred CCEEEEEeCCCCCchh-h---------hccCCEEEEcHHHHHHHHhC---Cchhh--hcCCEEEEcCcCccCCccchHHH
Confidence 5777888876533211 1 12469999999988654321 11122 35789999999999642 2223
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCCCHHHHHH
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQNDLHELWS 351 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ 351 (520)
...+..+ ....+.++||||.- +..++-.
T Consensus 160 e~il~~l-~~~~qiI~lSATl~--n~~~la~ 187 (720)
T PRK00254 160 EMILTHM-LGRAQILGLSATVG--NAEELAE 187 (720)
T ss_pred HHHHHhc-CcCCcEEEEEccCC--CHHHHHH
Confidence 3333333 24567899999984 3555543
No 55
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.19 E-value=1.6e-10 Score=124.82 Aligned_cols=157 Identities=13% Similarity=0.154 Sum_probs=99.9
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHH-HHHHHHh------CCCCCCEEEEeCCc-chhhHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITY-LMLLKHL------NNDPGPHLIVCPAS-VLENWEREL 237 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~-l~~l~~~------~~~~~~~LIV~P~s-ll~~W~~E~ 237 (520)
..+.|+|..++..++ .| +.+|+..+||+|||+..+.. +..+... ......+|||+|+. |..|+.+++
T Consensus 142 ~~ptpiQ~~aip~il----~g-~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~ 216 (518)
T PLN00206 142 EFPTPIQMQAIPAAL----SG-RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQA 216 (518)
T ss_pred CCCCHHHHHHHHHHh----cC-CCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHH
Confidence 478999999999887 44 46799999999999875443 3322211 11345689999975 557788888
Q ss_pred HHhcCC--CeE-EEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccC
Q 039292 238 KKWCPS--FSV-LQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 238 ~~~~p~--~~v-~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
..+... +++ .+++|.........+ ..+.+|+|+|++.+....... .+.-.+..+||+||||++.
T Consensus 217 ~~l~~~~~~~~~~~~gG~~~~~q~~~l--------~~~~~IiV~TPgrL~~~l~~~-----~~~l~~v~~lViDEad~ml 283 (518)
T PLN00206 217 KVLGKGLPFKTALVVGGDAMPQQLYRI--------QQGVELIVGTPGRLIDLLSKH-----DIELDNVSVLVLDEVDCML 283 (518)
T ss_pred HHHhCCCCceEEEEECCcchHHHHHHh--------cCCCCEEEECHHHHHHHHHcC-----CccchheeEEEeecHHHHh
Confidence 777643 333 344454332211111 124699999999987643211 2223357899999999985
Q ss_pred Ccc--hHHHHHHHHHhhhcCcEEEEeccCC
Q 039292 315 DKN--SYRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 315 n~~--s~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
... ....+.+..+ ...+.+++|||.-
T Consensus 284 ~~gf~~~i~~i~~~l--~~~q~l~~SATl~ 311 (518)
T PLN00206 284 ERGFRDQVMQIFQAL--SQPQVLLFSATVS 311 (518)
T ss_pred hcchHHHHHHHHHhC--CCCcEEEEEeeCC
Confidence 432 2233333333 4568899999974
No 56
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.19 E-value=6.3e-10 Score=126.95 Aligned_cols=166 Identities=20% Similarity=0.242 Sum_probs=101.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHH-HHHHHHhC-----CCCCCEEEEeCCc-chhhHHHH---
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITY-LMLLKHLN-----NDPGPHLIVCPAS-VLENWERE--- 236 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~-l~~l~~~~-----~~~~~~LIV~P~s-ll~~W~~E--- 236 (520)
.|+|+|..++..+. .| ..+|++.+||+|||+.++.. +..+.... .....+|+|+|.. |..++.+.
T Consensus 32 ~~tpiQ~~Ai~~il----~g-~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 32 TFTPPQRYAIPLIH----EG-KNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCHHHHHHHHHHH----cC-CCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 59999999998875 44 35799999999999876543 33333211 1233589999965 44555543
Q ss_pred ----HHHhc-------CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEE
Q 039292 237 ----LKKWC-------PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCV 305 (520)
Q Consensus 237 ----~~~~~-------p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~v 305 (520)
+..++ +.+++.+.+|............ .+.+|+|||++.+....... .....+ .+..+|
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~-------~~p~IlVtTPE~L~~ll~~~-~~~~~l--~~l~~V 176 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK-------KPPHILITTPESLAILLNSP-KFREKL--RTVKWV 176 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh-------CCCCEEEecHHHHHHHhcCh-hHHHHH--hcCCEE
Confidence 33333 3667888888765443222111 14699999999986543211 111222 357889
Q ss_pred EEeCccccCCcc--hHHHHHH---HHHhhhcCcEEEEeccCCCCCHHHH
Q 039292 306 LMDEAHALKDKN--SYRWKNL---MSVARNANQRLMLTGTPLQNDLHEL 349 (520)
Q Consensus 306 IiDEaH~ikn~~--s~~~~~l---~~l~~~~~~rl~LTgTPi~n~~~el 349 (520)
|+||+|.+.+.. ......+ ..+.....++|+||||.- ++.++
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~v 223 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE--PLEEV 223 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHH
Confidence 999999986432 2222222 233223467899999973 34444
No 57
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.15 E-value=9.7e-10 Score=123.85 Aligned_cols=160 Identities=18% Similarity=0.227 Sum_probs=109.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHH-HHHHHhCCCCCCEEEEeCCcchhh-HHHHHHHhc---
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYL-MLLKHLNNDPGPHLIVCPASVLEN-WERELKKWC--- 241 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l-~~l~~~~~~~~~~LIV~P~sll~~-W~~E~~~~~--- 241 (520)
.|+.||.++++.+. .| ..+|+.-.||+|||..-+-.| ..+. .....+.|+|-|+..|.| -.+.|.+|.
T Consensus 70 ~lY~HQ~~A~~~~~----~G-~~vvVtTgTgSGKTe~FllPIld~~l--~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~ 142 (851)
T COG1205 70 RLYSHQVDALRLIR----EG-RNVVVTTGTGSGKTESFLLPILDHLL--RDPSARALLLYPTNALANDQAERLRELISDL 142 (851)
T ss_pred cccHHHHHHHHHHH----CC-CCEEEECCCCCchhHHHHHHHHHHHh--hCcCccEEEEechhhhHhhHHHHHHHHHHhC
Confidence 49999999999887 45 568999999999998754443 3443 344558899999776655 777777775
Q ss_pred C-CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc-chH
Q 039292 242 P-SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK-NSY 319 (520)
Q Consensus 242 p-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~-~s~ 319 (520)
| .+++..|+|.......+.+.. .+.+|++|||+|+-......... ..+...++.+||+||+|.+++- .|.
T Consensus 143 ~~~v~~~~y~Gdt~~~~r~~~~~-------~pp~IllTNpdMLh~~llr~~~~-~~~~~~~Lk~lVvDElHtYrGv~GS~ 214 (851)
T COG1205 143 PGKVTFGRYTGDTPPEERRAIIR-------NPPDILLTNPDMLHYLLLRNHDA-WLWLLRNLKYLVVDELHTYRGVQGSE 214 (851)
T ss_pred CCcceeeeecCCCChHHHHHHHh-------CCCCEEEeCHHHHHHHhccCcch-HHHHHhcCcEEEEecceeccccchhH
Confidence 4 577889999876655432221 25799999999996633332222 2233334999999999999763 444
Q ss_pred HHHHHHHHhh------hcCcEEEEeccC
Q 039292 320 RWKNLMSVAR------NANQRLMLTGTP 341 (520)
Q Consensus 320 ~~~~l~~l~~------~~~~rl~LTgTP 341 (520)
+...++.+.. .....++.|||-
T Consensus 215 vA~llRRL~~~~~~~~~~~q~i~~SAT~ 242 (851)
T COG1205 215 VALLLRRLLRRLRRYGSPLQIICTSATL 242 (851)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeccc
Confidence 4444444422 134568888885
No 58
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.14 E-value=5.2e-10 Score=118.18 Aligned_cols=159 Identities=15% Similarity=0.131 Sum_probs=99.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHH-HHHHHhC------CCCCCEEEEeCCc-chhhHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYL-MLLKHLN------NDPGPHLIVCPAS-VLENWERELK 238 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l-~~l~~~~------~~~~~~LIV~P~s-ll~~W~~E~~ 238 (520)
.+.|+|..++..++ .| ..+|+..++|+|||+..+..+ ..+.... .....+|||||+. |..||.+++.
T Consensus 30 ~pt~iQ~~aip~il----~g-~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~ 104 (423)
T PRK04837 30 NCTPIQALALPLTL----AG-RDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAE 104 (423)
T ss_pred CCCHHHHHHHHHHh----CC-CcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHH
Confidence 67899999998877 44 468999999999998764333 2332211 1234589999964 6688888887
Q ss_pred HhcC--CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc
Q 039292 239 KWCP--SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK 316 (520)
Q Consensus 239 ~~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~ 316 (520)
.+.. ++++..+.|....... ...+ ..+.+|+|+|++.+..... ...+.-..+.+||+||||++...
T Consensus 105 ~l~~~~~~~v~~~~gg~~~~~~--~~~l-----~~~~~IlV~TP~~l~~~l~-----~~~~~l~~v~~lViDEad~l~~~ 172 (423)
T PRK04837 105 PLAQATGLKLGLAYGGDGYDKQ--LKVL-----ESGVDILIGTTGRLIDYAK-----QNHINLGAIQVVVLDEADRMFDL 172 (423)
T ss_pred HHhccCCceEEEEECCCCHHHH--HHHh-----cCCCCEEEECHHHHHHHHH-----cCCcccccccEEEEecHHHHhhc
Confidence 7653 4666666665432211 1111 1246999999999976442 12233446889999999998643
Q ss_pred c--hHHHHHHHHHhh-hcCcEEEEeccCC
Q 039292 317 N--SYRWKNLMSVAR-NANQRLMLTGTPL 342 (520)
Q Consensus 317 ~--s~~~~~l~~l~~-~~~~rl~LTgTPi 342 (520)
. ......+..+.. .....+++|||.-
T Consensus 173 ~f~~~i~~i~~~~~~~~~~~~~l~SAT~~ 201 (423)
T PRK04837 173 GFIKDIRWLFRRMPPANQRLNMLFSATLS 201 (423)
T ss_pred ccHHHHHHHHHhCCCccceeEEEEeccCC
Confidence 2 112222222210 1233588999975
No 59
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.14 E-value=1e-09 Score=122.83 Aligned_cols=165 Identities=16% Similarity=0.139 Sum_probs=105.3
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHH-HHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhc-C
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAI-TYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWC-P 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~ai-a~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~-p 242 (520)
..|++||..++..+. .| ..+|++.+||+|||+..+ .++..+.. .....+|||+|+.. ..|-.+.+.++. .
T Consensus 35 ~~p~~~Q~~ai~~il----~G-~nvvv~apTGSGKTla~~LPiL~~l~~--~~~~~aL~l~PtraLa~q~~~~l~~l~~~ 107 (742)
T TIGR03817 35 HRPWQHQARAAELAH----AG-RHVVVATGTASGKSLAYQLPVLSALAD--DPRATALYLAPTKALAADQLRAVRELTLR 107 (742)
T ss_pred CcCCHHHHHHHHHHH----CC-CCEEEECCCCCcHHHHHHHHHHHHHhh--CCCcEEEEEcChHHHHHHHHHHHHHhccC
Confidence 369999999999886 45 457999999999998653 33444432 23457899999755 466777787775 3
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcc-ccchHHHHhhcCccEEEEeCccccCC-cchHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQ-QKDDRKILKRWRWSCVLMDEAHALKD-KNSYR 320 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~-~~~~~~~l~~~~~~~vIiDEaH~ikn-~~s~~ 320 (520)
++++.+|+|.........+.. ..+|+|+|++++...... ......++ .+..+||+||||.+.+ ..+..
T Consensus 108 ~i~v~~~~Gdt~~~~r~~i~~--------~~~IivtTPd~L~~~~L~~~~~~~~~l--~~l~~vViDEah~~~g~fg~~~ 177 (742)
T TIGR03817 108 GVRPATYDGDTPTEERRWARE--------HARYVLTNPDMLHRGILPSHARWARFL--RRLRYVVIDECHSYRGVFGSHV 177 (742)
T ss_pred CeEEEEEeCCCCHHHHHHHhc--------CCCEEEEChHHHHHhhccchhHHHHHH--hcCCEEEEeChhhccCccHHHH
Confidence 578888888765433222221 358999999988632111 00011222 3578999999999865 23333
Q ss_pred HHHHHHH---hh---hcCcEEEEeccCCCCCHHHH
Q 039292 321 WKNLMSV---AR---NANQRLMLTGTPLQNDLHEL 349 (520)
Q Consensus 321 ~~~l~~l---~~---~~~~rl~LTgTPi~n~~~el 349 (520)
...+..+ +. ...+.+++|||.- +..++
T Consensus 178 ~~il~rL~ri~~~~g~~~q~i~~SATi~--n~~~~ 210 (742)
T TIGR03817 178 ALVLRRLRRLCARYGASPVFVLASATTA--DPAAA 210 (742)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEecCCC--CHHHH
Confidence 3333333 21 2356899999953 34444
No 60
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.14 E-value=6.2e-10 Score=118.40 Aligned_cols=163 Identities=18% Similarity=0.253 Sum_probs=115.5
Q ss_pred CccCCcHHHHHHHHHHHHHHhcC--CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHh
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRKG--IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKW 240 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~~--~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~ 240 (520)
+.-.|...|..+++-+..-.... .+. +|-.++|+|||++|+..+... -..+.-+.+.+|+.++ .|-...+.+|
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~R-LlQGDVGSGKTvVA~laml~a---i~~G~Q~ALMAPTEILA~QH~~~~~~~ 334 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNR-LLQGDVGSGKTVVALLAMLAA---IEAGYQAALMAPTEILAEQHYESLRKW 334 (677)
T ss_pred CCCCccHHHHHHHHHHHhhhcCchhhHH-HhccCcCCCHHHHHHHHHHHH---HHcCCeeEEeccHHHHHHHHHHHHHHH
Confidence 34478899999999887544332 134 788899999999876555443 2356678899998876 6688999999
Q ss_pred cC--CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch
Q 039292 241 CP--SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 241 ~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
++ ++.|..+.|.-+.........--.. +..+++|=|+..+... ....+..+||+||-||+. .
T Consensus 335 l~~~~i~V~lLtG~~kgk~r~~~l~~l~~---G~~~ivVGTHALiQd~----------V~F~~LgLVIiDEQHRFG---V 398 (677)
T COG1200 335 LEPLGIRVALLTGSLKGKARKEILEQLAS---GEIDIVVGTHALIQDK----------VEFHNLGLVIIDEQHRFG---V 398 (677)
T ss_pred hhhcCCeEEEeecccchhHHHHHHHHHhC---CCCCEEEEcchhhhcc----------eeecceeEEEEecccccc---H
Confidence 97 5778888888765544443332222 3579999998887542 234568899999999994 3
Q ss_pred HHHHHHHHHhhh-cCcEEEEeccCCCCCHH
Q 039292 319 YRWKNLMSVARN-ANQRLMLTGTPLQNDLH 347 (520)
Q Consensus 319 ~~~~~l~~l~~~-~~~rl~LTgTPi~n~~~ 347 (520)
..-..+..-. . .++.+.||||||+..+.
T Consensus 399 ~QR~~L~~KG-~~~Ph~LvMTATPIPRTLA 427 (677)
T COG1200 399 HQRLALREKG-EQNPHVLVMTATPIPRTLA 427 (677)
T ss_pred HHHHHHHHhC-CCCCcEEEEeCCCchHHHH
Confidence 3334444432 3 57999999999998863
No 61
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.13 E-value=4.8e-10 Score=120.21 Aligned_cols=161 Identities=18% Similarity=0.207 Sum_probs=100.0
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHH-HHHHHHHhCC------CCCCEEEEeCCc-chhhHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAIT-YLMLLKHLNN------DPGPHLIVCPAS-VLENWEREL 237 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia-~l~~l~~~~~------~~~~~LIV~P~s-ll~~W~~E~ 237 (520)
..+.|||..++..++ .| +.+|++..+|+|||+..+- ++..+..... ....+|||+|+. |..||.+.+
T Consensus 108 ~~~~~iQ~~ai~~~~----~G-~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~ 182 (475)
T PRK01297 108 PYCTPIQAQVLGYTL----AG-HDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDA 182 (475)
T ss_pred CCCCHHHHHHHHHHh----CC-CCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHH
Confidence 368999999998876 45 4579999999999976533 3333322111 134689999964 567788888
Q ss_pred HHhcC--CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC
Q 039292 238 KKWCP--SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD 315 (520)
Q Consensus 238 ~~~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn 315 (520)
..+.. ++.+..+.|....... ...+.. ...+|+|+|++++..... ...+.-.+..+|||||||++.+
T Consensus 183 ~~l~~~~~~~v~~~~gg~~~~~~--~~~~~~----~~~~Iiv~TP~~Ll~~~~-----~~~~~l~~l~~lViDEah~l~~ 251 (475)
T PRK01297 183 AALTKYTGLNVMTFVGGMDFDKQ--LKQLEA----RFCDILVATPGRLLDFNQ-----RGEVHLDMVEVMVLDEADRMLD 251 (475)
T ss_pred HHhhccCCCEEEEEEccCChHHH--HHHHhC----CCCCEEEECHHHHHHHHH-----cCCcccccCceEEechHHHHHh
Confidence 87753 4567667665432211 111111 246999999999965331 1112233578999999999965
Q ss_pred cch--HHHHHHHHHhh-hcCcEEEEeccCC
Q 039292 316 KNS--YRWKNLMSVAR-NANQRLMLTGTPL 342 (520)
Q Consensus 316 ~~s--~~~~~l~~l~~-~~~~rl~LTgTPi 342 (520)
..- .....+..+.. ...+.+++|||..
T Consensus 252 ~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~ 281 (475)
T PRK01297 252 MGFIPQVRQIIRQTPRKEERQTLLFSATFT 281 (475)
T ss_pred cccHHHHHHHHHhCCCCCCceEEEEEeecC
Confidence 321 12222222211 1346899999964
No 62
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.10 E-value=8.2e-10 Score=112.30 Aligned_cols=164 Identities=24% Similarity=0.308 Sum_probs=112.2
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHH----HHHHHHHHHHHHhCCCCCCEEEEeCCcchh-h---HHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKT----IQAITYLMLLKHLNNDPGPHLIVCPASVLE-N---WERELK 238 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKT----i~aia~l~~l~~~~~~~~~~LIV~P~sll~-~---W~~E~~ 238 (520)
+|.+.|...+.-++ .| ..++.+.-+|+||| +.|+.++...+...+....+|||||+.-+. | -.+++.
T Consensus 104 ~MT~VQ~~ti~pll----~g-kDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll 178 (543)
T KOG0342|consen 104 TMTPVQQKTIPPLL----EG-KDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELL 178 (543)
T ss_pred chhHHHHhhcCccC----CC-ccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHH
Confidence 56677777766665 34 35799999999999 667777777777777777899999976543 3 555677
Q ss_pred HhcCCCeEE-EecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC--
Q 039292 239 KWCPSFSVL-QYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD-- 315 (520)
Q Consensus 239 ~~~p~~~v~-~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn-- 315 (520)
+++++..+. +.+|+++......+.. +.+++|+|++.|..|..... .|.....+++|+|||.++..
T Consensus 179 ~~h~~~~v~~viGG~~~~~e~~kl~k--------~~niliATPGRLlDHlqNt~----~f~~r~~k~lvlDEADrlLd~G 246 (543)
T KOG0342|consen 179 KYHESITVGIVIGGNNFSVEADKLVK--------GCNILIATPGRLLDHLQNTS----GFLFRNLKCLVLDEADRLLDIG 246 (543)
T ss_pred hhCCCcceEEEeCCccchHHHHHhhc--------cccEEEeCCchHHhHhhcCC----cchhhccceeEeecchhhhhcc
Confidence 888665554 4555555544444433 57999999999998875322 23344458999999999963
Q ss_pred cchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHH
Q 039292 316 KNSYRWKNLMSVARNANQRLMLTGTPLQNDLHEL 349 (520)
Q Consensus 316 ~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el 349 (520)
..-.+-+.+..+. +.++.+++|||-- ..+.++
T Consensus 247 F~~di~~Ii~~lp-k~rqt~LFSAT~~-~kV~~l 278 (543)
T KOG0342|consen 247 FEEDVEQIIKILP-KQRQTLLFSATQP-SKVKDL 278 (543)
T ss_pred cHHHHHHHHHhcc-ccceeeEeeCCCc-HHHHHH
Confidence 3333444444443 6677899999953 334444
No 63
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.10 E-value=1.1e-09 Score=119.31 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=100.7
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHH-HHHHHhC------CCCCCEEEEeCCc-chhhHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYL-MLLKHLN------NDPGPHLIVCPAS-VLENWEREL 237 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l-~~l~~~~------~~~~~~LIV~P~s-ll~~W~~E~ 237 (520)
..+.|+|..++..++ .| +.+|+..++|+|||+..+..+ ..+.... .....+|||||+. |..|+.+.+
T Consensus 30 ~~ptpiQ~~~ip~~l----~G-~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~ 104 (572)
T PRK04537 30 TRCTPIQALTLPVAL----PG-GDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA 104 (572)
T ss_pred CCCCHHHHHHHHHHh----CC-CCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH
Confidence 368899999999887 45 468999999999998765443 3332111 1135799999964 567899999
Q ss_pred HHhcCC--CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC
Q 039292 238 KKWCPS--FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD 315 (520)
Q Consensus 238 ~~~~p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn 315 (520)
.+|... +.+..++|......... .+. ...+|+|+|++.|...... ...+....+.+|||||||++..
T Consensus 105 ~~l~~~~~i~v~~l~Gg~~~~~q~~--~l~-----~~~dIiV~TP~rL~~~l~~----~~~~~l~~v~~lViDEAh~lld 173 (572)
T PRK04537 105 VKFGADLGLRFALVYGGVDYDKQRE--LLQ-----QGVDVIIATPGRLIDYVKQ----HKVVSLHACEICVLDEADRMFD 173 (572)
T ss_pred HHHhccCCceEEEEECCCCHHHHHH--HHh-----CCCCEEEECHHHHHHHHHh----ccccchhheeeeEecCHHHHhh
Confidence 888754 45666666543322211 111 2468999999998764321 1122333567899999998854
Q ss_pred cc--hHHHHHHHHHhh-hcCcEEEEeccCC
Q 039292 316 KN--SYRWKNLMSVAR-NANQRLMLTGTPL 342 (520)
Q Consensus 316 ~~--s~~~~~l~~l~~-~~~~rl~LTgTPi 342 (520)
.. ......+..+.. ...+.+++|||.-
T Consensus 174 ~gf~~~i~~il~~lp~~~~~q~ll~SATl~ 203 (572)
T PRK04537 174 LGFIKDIRFLLRRMPERGTRQTLLFSATLS 203 (572)
T ss_pred cchHHHHHHHHHhcccccCceEEEEeCCcc
Confidence 21 111122222211 1345789999964
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.09 E-value=6e-10 Score=123.85 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=110.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc-CCC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC-PSF 244 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~-p~~ 244 (520)
.|.|.|..+|...... + ..+|++.+||+|||+.|..++.... ....++++.|||. +|..+-.++|.+|- -++
T Consensus 31 el~~~qq~av~~~~~~---~-~N~li~aPTgsGKTlIA~lai~~~l--~~~~~k~vYivPlkALa~Ek~~~~~~~~~~Gi 104 (766)
T COG1204 31 ELFNPQQEAVEKGLLS---D-ENVLISAPTGSGKTLIALLAILSTL--LEGGGKVVYIVPLKALAEEKYEEFSRLEELGI 104 (766)
T ss_pred HhhHHHHHHhhccccC---C-CcEEEEcCCCCchHHHHHHHHHHHH--HhcCCcEEEEeChHHHHHHHHHHhhhHHhcCC
Confidence 7899999999766633 2 4589999999999998866554332 2337899999995 56666888888443 378
Q ss_pred eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc-chHHHHH
Q 039292 245 SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK-NSYRWKN 323 (520)
Q Consensus 245 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~-~s~~~~~ 323 (520)
+|.+++|........ ...++|+||||+.+-........ --...++||+||+|.+... .......
T Consensus 105 rV~~~TgD~~~~~~~----------l~~~~ViVtT~EK~Dsl~R~~~~-----~~~~V~lvViDEiH~l~d~~RG~~lE~ 169 (766)
T COG1204 105 RVGISTGDYDLDDER----------LARYDVIVTTPEKLDSLTRKRPS-----WIEEVDLVVIDEIHLLGDRTRGPVLES 169 (766)
T ss_pred EEEEecCCcccchhh----------hccCCEEEEchHHhhHhhhcCcc-----hhhcccEEEEeeeeecCCcccCceehh
Confidence 999999987644311 12579999999998653321111 2235789999999999764 2222222
Q ss_pred HHH-Hhh-h-cCcEEEEeccCCCCCHHHHHHHHHHhCCCC
Q 039292 324 LMS-VAR-N-ANQRLMLTGTPLQNDLHELWSLLEFMMPDL 360 (520)
Q Consensus 324 l~~-l~~-~-~~~rl~LTgTPi~n~~~el~~ll~fl~p~~ 360 (520)
+.. ... . .-+.++||||- .|..|+ ..||+-..
T Consensus 170 iv~r~~~~~~~~rivgLSATl--pN~~ev---A~wL~a~~ 204 (766)
T COG1204 170 IVARMRRLNELIRIVGLSATL--PNAEEV---ADWLNAKL 204 (766)
T ss_pred HHHHHHhhCcceEEEEEeeec--CCHHHH---HHHhCCcc
Confidence 211 111 1 24678899996 344554 45555443
No 65
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.07 E-value=4e-09 Score=117.19 Aligned_cols=157 Identities=16% Similarity=0.152 Sum_probs=102.8
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPS 243 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~ 243 (520)
...|.++|..++..+.... +...++|...||+|||...+..+..... .++.+||++|. .+..||.+.|.++++
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~--~~~~~Ll~~~TGSGKT~v~l~~i~~~l~---~g~~vLvLvPt~~L~~Q~~~~l~~~fg- 215 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAA--GFSPFLLDGVTGSGKTEVYLQAIAEVLA---QGKQALVLVPEIALTPQMLARFRARFG- 215 (679)
T ss_pred CCCCCHHHHHHHHHHHhcc--CCCcEEEECCCCChHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhC-
Confidence 3479999999999987543 2245799999999999988766654432 35679999996 567889999998874
Q ss_pred CeEEEecCCCchhhhH-HHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC--cchHH
Q 039292 244 FSVLQYHGAGRTAYSR-ELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD--KNSYR 320 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn--~~s~~ 320 (520)
..+.+++|........ .+.... .+..+|+|.|++.+. +.-.++++||+||+|...- .....
T Consensus 216 ~~v~~~~s~~s~~~r~~~~~~~~----~g~~~IVVgTrsal~------------~p~~~l~liVvDEeh~~s~~~~~~p~ 279 (679)
T PRK05580 216 APVAVLHSGLSDGERLDEWRKAK----RGEAKVVIGARSALF------------LPFKNLGLIIVDEEHDSSYKQQEGPR 279 (679)
T ss_pred CCEEEEECCCCHHHHHHHHHHHH----cCCCCEEEeccHHhc------------ccccCCCEEEEECCCccccccCcCCC
Confidence 5777788764433222 222211 124689999986552 1234689999999997632 11111
Q ss_pred H--H--HHHHHhhhcCcEEEEeccCCC
Q 039292 321 W--K--NLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 321 ~--~--~l~~l~~~~~~rl~LTgTPi~ 343 (520)
+ + ++..........+++||||..
T Consensus 280 y~~r~va~~ra~~~~~~~il~SATps~ 306 (679)
T PRK05580 280 YHARDLAVVRAKLENIPVVLGSATPSL 306 (679)
T ss_pred CcHHHHHHHHhhccCCCEEEEcCCCCH
Confidence 1 1 111111134568889999963
No 66
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.05 E-value=3.4e-09 Score=109.26 Aligned_cols=162 Identities=17% Similarity=0.139 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHhcCCC-ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc------C
Q 039292 171 YQLVGVNFLLLLYRKGIA-GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC------P 242 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~~~-g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~------p 242 (520)
||.++++.|.. +.. .++++.+||+|||..++..+. . ...++++++|. .++.+|.+.+..++ .
T Consensus 1 hQ~~~~~~~~~----~~~~~~~i~apTGsGKT~~~~~~~l--~----~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~ 70 (357)
T TIGR03158 1 HQVATFEALQS----KDADIIFNTAPTGAGKTLAWLTPLL--H----GENDTIALYPTNALIEDQTEAIKEFVDVFKPER 70 (357)
T ss_pred CHHHHHHHHHc----CCCCEEEEECCCCCCHHHHHHHHHH--H----cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCC
Confidence 79999988873 322 368899999999987654432 1 23578999996 46677888887775 2
Q ss_pred CCeEEEecCCCchhhhHHH-------------HHHhhcCCCCCccEEEeehhhHhhhhcc---ccchHHHHhhcCccEEE
Q 039292 243 SFSVLQYHGAGRTAYSREL-------------SSLAKAGLPPPFNVLLVCYSLFERHSVQ---QKDDRKILKRWRWSCVL 306 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~-------------~~~~~~~~~~~~~vlitty~~l~~~~~~---~~~~~~~l~~~~~~~vI 306 (520)
+..+..+.|.......... ..+..........+++|++++|...... ............+.+||
T Consensus 71 ~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV 150 (357)
T TIGR03158 71 DVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVI 150 (357)
T ss_pred CceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEE
Confidence 4556667775222100000 0000001123468899999988643211 01011111123689999
Q ss_pred EeCccccCCcch-------HHHHHHHHHhhhcCcEEEEeccCCC
Q 039292 307 MDEAHALKDKNS-------YRWKNLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 307 iDEaH~ikn~~s-------~~~~~l~~l~~~~~~rl~LTgTPi~ 343 (520)
+||+|.+..... .....+... ....+.++|||||-.
T Consensus 151 ~DE~H~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~i~lSAT~~~ 193 (357)
T TIGR03158 151 FDEFHLYDAKQLVGMLFLLAYMQLIRFF-ECRRKFVFLSATPDP 193 (357)
T ss_pred EecccccCcccchhhhhhhHHHHHHHhh-hcCCcEEEEecCCCH
Confidence 999999874221 111111111 124578999999853
No 67
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.02 E-value=2.5e-09 Score=108.84 Aligned_cols=144 Identities=19% Similarity=0.184 Sum_probs=99.2
Q ss_pred cCCcHHHHHHHHHHHHHHhcC----CCceEEeCCCCCCHHHH-HHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKG----IAGAILADEMGLGKTIQ-AITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKK 239 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~----~~g~ILademGlGKTi~-aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~ 239 (520)
..+.|-|...+-|++...... .+.++++..+|+|||+. +|-++..+....-..-+.+||+|+. +..|..+.|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 478999999999998655421 24578999999999965 3333344433223445789999965 56789999999
Q ss_pred hcCC--CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC
Q 039292 240 WCPS--FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD 315 (520)
Q Consensus 240 ~~p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn 315 (520)
|+++ +.|....|.+. .......+.........+|+|+|++.|..|... .+.|.-.+..++|||||.|+.+
T Consensus 238 ~~~~tgL~V~~~sgq~s--l~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~----~k~f~Lk~LrfLVIDEADRll~ 309 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNS--LEDEARQLASDPPECRIDILVATPGRLVDHLNN----TKSFDLKHLRFLVIDEADRLLD 309 (620)
T ss_pred hccCCceEEEecccccc--hHHHHHHHhcCCCccccceEEcCchHHHHhccC----CCCcchhhceEEEechHHHHHH
Confidence 9975 45555555543 233333444433334579999999999987642 3344555678999999999965
No 68
>PRK09401 reverse gyrase; Reviewed
Probab=99.02 E-value=3.2e-09 Score=123.32 Aligned_cols=129 Identities=18% Similarity=0.221 Sum_probs=86.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCC--
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPS-- 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~-- 243 (520)
.++|+|..++..++ .| ..+++..+||+|||..++.++..+ ...+..+|||+|+ .|+.||.+.+.+++..
T Consensus 80 ~pt~iQ~~~i~~il----~g-~dv~i~ApTGsGKT~f~l~~~~~l---~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~ 151 (1176)
T PRK09401 80 KPWSLQRTWAKRLL----LG-ESFAIIAPTGVGKTTFGLVMSLYL---AKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVG 151 (1176)
T ss_pred CCcHHHHHHHHHHH----CC-CcEEEEcCCCCCHHHHHHHHHHHH---HhcCCeEEEEeccHHHHHHHHHHHHHHhhhcC
Confidence 68899999988776 45 457888899999996544333333 2346789999996 5678899999998754
Q ss_pred CeEEEecCCCc---hhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccC
Q 039292 244 FSVLQYHGAGR---TAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 244 ~~v~~~~g~~~---~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
..+.+..|... .........+.. ..++|+|+|++.+.++ ...+....+++||+||||++-
T Consensus 152 ~~~~~~~g~~~~~~~ek~~~~~~l~~----~~~~IlV~Tp~rL~~~-------~~~l~~~~~~~lVvDEaD~~L 214 (1176)
T PRK09401 152 CGVKILYYHSSLKKKEKEEFLERLKE----GDFDILVTTSQFLSKN-------FDELPKKKFDFVFVDDVDAVL 214 (1176)
T ss_pred ceEEEEEccCCcchhHHHHHHHHHhc----CCCCEEEECHHHHHHH-------HHhccccccCEEEEEChHHhh
Confidence 33333333221 111112222221 2479999999999773 234555669999999999875
No 69
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.02 E-value=2.7e-09 Score=117.66 Aligned_cols=174 Identities=22% Similarity=0.207 Sum_probs=115.7
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHH-HHHHHHhC-C---CCCCEEEEeCCcchhh-HHHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITY-LMLLKHLN-N---DPGPHLIVCPASVLEN-WERELKK 239 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~-l~~l~~~~-~---~~~~~LIV~P~sll~~-W~~E~~~ 239 (520)
..++|+|..++..+. .| ..+++..+||+|||..|+-- +..+.... + .+-.+|.|.|.-.+.+ -.+.+..
T Consensus 21 ~~~t~~Q~~a~~~i~----~G-~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 21 TSLTPPQRYAIPEIH----SG-ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred CCCCHHHHHHHHHHh----CC-CceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 478999999998876 56 45799999999999987544 44444431 1 1234799999776655 5555555
Q ss_pred hc--CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc-
Q 039292 240 WC--PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK- 316 (520)
Q Consensus 240 ~~--p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~- 316 (520)
|. -++.+.+-+|.........+ ...+.+|+|||++++.-..... .....|. +..+||+||.|.+.+.
T Consensus 96 ~~~~~G~~v~vRhGDT~~~er~r~-------~~~PPdILiTTPEsL~lll~~~-~~r~~l~--~vr~VIVDEiHel~~sK 165 (814)
T COG1201 96 PLRELGIEVAVRHGDTPQSEKQKM-------LKNPPHILITTPESLAILLNSP-KFRELLR--DVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHcCCccceecCCCChHHhhhc-------cCCCCcEEEeChhHHHHHhcCH-HHHHHhc--CCcEEEeehhhhhhccc
Confidence 54 35667777887655433332 2246899999999997654322 2333343 4667999999999753
Q ss_pred -chHHHHHHHHHhhh--cCcEEEEeccCCCCCHHHHHHHHHHhCCC
Q 039292 317 -NSYRWKNLMSVARN--ANQRLMLTGTPLQNDLHELWSLLEFMMPD 359 (520)
Q Consensus 317 -~s~~~~~l~~l~~~--~~~rl~LTgTPi~n~~~el~~ll~fl~p~ 359 (520)
.++.+-.+..+... ...||+||||=- +..-+..||.+.
T Consensus 166 RG~~Lsl~LeRL~~l~~~~qRIGLSATV~-----~~~~varfL~g~ 206 (814)
T COG1201 166 RGVQLALSLERLRELAGDFQRIGLSATVG-----PPEEVAKFLVGF 206 (814)
T ss_pred cchhhhhhHHHHHhhCcccEEEeehhccC-----CHHHHHHHhcCC
Confidence 34555555555332 467999999964 445556777665
No 70
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.02 E-value=7.3e-10 Score=112.86 Aligned_cols=167 Identities=17% Similarity=0.206 Sum_probs=104.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHH-HHHHHHHHHHhC--CCCCCEEEEeCCcc----hhhHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQ-AITYLMLLKHLN--NDPGPHLIVCPASV----LENWERELKK 239 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~-aia~l~~l~~~~--~~~~~~LIV~P~sl----l~~W~~E~~~ 239 (520)
...|.|...|--.+ -| ...+-|.-+|+|||.. ++-.|..|...+ ....++||+||+.- +++..+.+..
T Consensus 203 ~PTpIQ~a~IPval----lg-kDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaq 277 (691)
T KOG0338|consen 203 KPTPIQVATIPVAL----LG-KDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQ 277 (691)
T ss_pred CCCchhhhcccHHh----hc-chhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHh
Confidence 45678888876443 12 2345567799999943 233333343322 33568999999654 4667788888
Q ss_pred hcCCCeEEEec-CCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-
Q 039292 240 WCPSFSVLQYH-GAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN- 317 (520)
Q Consensus 240 ~~p~~~v~~~~-g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~- 317 (520)
|+. +.+.+.- |-+-..-...+.+ ..+|||+|++.|..|.. +...|.--..-++|+|||.|+....
T Consensus 278 Ft~-I~~~L~vGGL~lk~QE~~LRs--------~PDIVIATPGRlIDHlr----Ns~sf~ldsiEVLvlDEADRMLeegF 344 (691)
T KOG0338|consen 278 FTD-ITVGLAVGGLDLKAQEAVLRS--------RPDIVIATPGRLIDHLR----NSPSFNLDSIEVLVLDEADRMLEEGF 344 (691)
T ss_pred hcc-ceeeeeecCccHHHHHHHHhh--------CCCEEEecchhHHHHhc----cCCCccccceeEEEechHHHHHHHHH
Confidence 885 5555544 4443322222222 56999999999988764 3344555567789999999986421
Q ss_pred hHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHH
Q 039292 318 SYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSL 352 (520)
Q Consensus 318 s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~l 352 (520)
.....-+..++.+.++.+++|||-- ..+.+|.++
T Consensus 345 ademnEii~lcpk~RQTmLFSATMt-eeVkdL~sl 378 (691)
T KOG0338|consen 345 ADEMNEIIRLCPKNRQTMLFSATMT-EEVKDLASL 378 (691)
T ss_pred HHHHHHHHHhccccccceeehhhhH-HHHHHHHHh
Confidence 1223344455668888999999963 455666553
No 71
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=98.98 E-value=5.7e-09 Score=107.76 Aligned_cols=151 Identities=15% Similarity=0.086 Sum_probs=89.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCCeEEEecCCCchhh---------hH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSFSVLQYHGAGRTAY---------SR 259 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~v~~~~g~~~~~~---------~~ 259 (520)
+++..+||+|||..++.++..... ....+++++|+|. +++.|+.+.+..++.. .+..++|...... ..
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~-~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~~~~~~~~~ 79 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIK-SQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKEMGDSEEFE 79 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-hCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhccCCchhHH
Confidence 588999999999998877665433 3456789999994 6778899999988754 4444554322100 00
Q ss_pred HHHHHhhcC--CCCCccEEEeehhhHhhhhcc-ccchHHHHhhcCccEEEEeCccccCCcch-HHHHHHHHHhhhcCcEE
Q 039292 260 ELSSLAKAG--LPPPFNVLLVCYSLFERHSVQ-QKDDRKILKRWRWSCVLMDEAHALKDKNS-YRWKNLMSVARNANQRL 335 (520)
Q Consensus 260 ~~~~~~~~~--~~~~~~vlitty~~l~~~~~~-~~~~~~~l~~~~~~~vIiDEaH~ikn~~s-~~~~~l~~l~~~~~~rl 335 (520)
......... ......|+++|++.+...... .......+......+||+||+|.+..... .....+..+.....+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 80 HLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCCCEE
Confidence 000000000 012357999999988664332 11112223344558999999999864322 22222333322345679
Q ss_pred EEeccCC
Q 039292 336 MLTGTPL 342 (520)
Q Consensus 336 ~LTgTPi 342 (520)
++|||+-
T Consensus 160 ~~SATlp 166 (358)
T TIGR01587 160 LMSATLP 166 (358)
T ss_pred EEecCch
Confidence 9999974
No 72
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.96 E-value=7.8e-09 Score=116.68 Aligned_cols=177 Identities=18% Similarity=0.149 Sum_probs=106.4
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~ 244 (520)
..+||+|.++|..++ .| +.+|+..+||.|||+...--+ +. ..+.+|||+|. +|+.++...+... ++
T Consensus 459 ~sFRp~Q~eaI~aiL----~G-rDVLVimPTGSGKSLcYQLPA--L~----~~GiTLVISPLiSLmqDQV~~L~~~--GI 525 (1195)
T PLN03137 459 HSFRPNQREIINATM----SG-YDVFVLMPTGGGKSLTYQLPA--LI----CPGITLVISPLVSLIQDQIMNLLQA--NI 525 (1195)
T ss_pred CCCCHHHHHHHHHHH----cC-CCEEEEcCCCccHHHHHHHHH--HH----cCCcEEEEeCHHHHHHHHHHHHHhC--CC
Confidence 479999999999887 44 468999999999998643222 21 24679999996 4555465665543 45
Q ss_pred eEEEecCCCchh-hhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHh-hcCccEEEEeCccccCCcch---H
Q 039292 245 SVLQYHGAGRTA-YSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILK-RWRWSCVLMDEAHALKDKNS---Y 319 (520)
Q Consensus 245 ~v~~~~g~~~~~-~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~-~~~~~~vIiDEaH~ikn~~s---~ 319 (520)
....+.|..... ....+..+.. ..+..+|+++|++.+........ ....+. ...+.+|||||||.+..... .
T Consensus 526 ~Aa~L~s~~s~~eq~~ilr~l~s--~~g~~~ILyvTPERL~~~d~ll~-~L~~L~~~~~LslIVIDEAHcVSqWGhDFRp 602 (1195)
T PLN03137 526 PAASLSAGMEWAEQLEILQELSS--EYSKYKLLYVTPEKVAKSDSLLR-HLENLNSRGLLARFVIDEAHCVSQWGHDFRP 602 (1195)
T ss_pred eEEEEECCCCHHHHHHHHHHHHh--cCCCCCEEEEChHHhhcchHHHH-HHHhhhhccccceeccCcchhhhhcccchHH
Confidence 555555543322 2222222221 12357999999998864210000 111111 23478999999999854211 1
Q ss_pred HHHHHHHHh--hhcCcEEEEeccCCCCCHHHHHHHHHHhCC
Q 039292 320 RWKNLMSVA--RNANQRLMLTGTPLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 320 ~~~~l~~l~--~~~~~rl~LTgTPi~n~~~el~~ll~fl~p 358 (520)
-++.+..+. ......++||||.-.....++...|.+..+
T Consensus 603 dYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~ 643 (1195)
T PLN03137 603 DYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNC 643 (1195)
T ss_pred HHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCc
Confidence 222222221 134568999999988887888777655443
No 73
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.92 E-value=1.8e-08 Score=117.26 Aligned_cols=129 Identities=15% Similarity=0.252 Sum_probs=88.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCCC-
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPSF- 244 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~- 244 (520)
.+.|+|..++..++ .| ..+++..+||+|||..++.++..+.. .+..+|||+|+. +..|+.+.+.+++...
T Consensus 78 ~p~~iQ~~~i~~il----~G-~d~vi~ApTGsGKT~f~l~~~~~l~~---~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 149 (1171)
T TIGR01054 78 EPWSIQKMWAKRVL----RG-DSFAIIAPTGVGKTTFGLAMSLFLAK---KGKRCYIILPTTLLVIQVAEKISSLAEKAG 149 (1171)
T ss_pred CCcHHHHHHHHHHh----CC-CeEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence 68899999998777 45 45788999999999755544443322 356799999964 5688999999887532
Q ss_pred -e---EEEecCCCchhhhH-HHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC
Q 039292 245 -S---VLQYHGAGRTAYSR-ELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD 315 (520)
Q Consensus 245 -~---v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn 315 (520)
. +..|+|........ .+..+.. +.++|+|+|++.+..+ ...+.. .++++|+||||++-.
T Consensus 150 i~~~~i~~~~Gg~~~~e~~~~~~~l~~----~~~dIlV~Tp~rL~~~-------~~~l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKEKKEFMERIEN----GDFDILITTTMFLSKN-------YDELGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CceeeeeeecCCCCHHHHHHHHHHHhc----CCCCEEEECHHHHHHH-------HHHhcC-CCCEEEEeChHhhhh
Confidence 2 33466654333222 2222222 2479999999998763 222333 799999999999854
No 74
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.90 E-value=5.1e-09 Score=109.61 Aligned_cols=157 Identities=23% Similarity=0.292 Sum_probs=105.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHH-HHHHHHHHH----hCCCCCC-EEEEeCCcc-hhhHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQA-ITYLMLLKH----LNNDPGP-HLIVCPASV-LENWERELKK 239 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~a-ia~l~~l~~----~~~~~~~-~LIV~P~sl-l~~W~~E~~~ 239 (520)
.+.|.|..+.-.++ .| +.+|....+|+|||+-- |-.+.++.. .....+| +||++|+.- ..|-.+++..
T Consensus 113 ~PtpIQaq~wp~~l----~G-rD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~ 187 (519)
T KOG0331|consen 113 KPTPIQAQGWPIAL----SG-RDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEARE 187 (519)
T ss_pred CCchhhhcccceec----cC-CceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHH
Confidence 57789998877766 45 57899999999999542 222222221 1233344 899999764 5668888999
Q ss_pred hcCCCe---EEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC-
Q 039292 240 WCPSFS---VLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD- 315 (520)
Q Consensus 240 ~~p~~~---v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn- 315 (520)
++..+. +++|+|.....-...+.. +.+|+|+|++.+..+. ....+.-.+..++|+|||.++-.
T Consensus 188 ~~~~~~~~~~cvyGG~~~~~Q~~~l~~--------gvdiviaTPGRl~d~l-----e~g~~~l~~v~ylVLDEADrMldm 254 (519)
T KOG0331|consen 188 FGKSLRLRSTCVYGGAPKGPQLRDLER--------GVDVVIATPGRLIDLL-----EEGSLNLSRVTYLVLDEADRMLDM 254 (519)
T ss_pred HcCCCCccEEEEeCCCCccHHHHHHhc--------CCcEEEeCChHHHHHH-----HcCCccccceeEEEeccHHhhhcc
Confidence 886654 455666554433333332 5799999999998754 23334445688999999999853
Q ss_pred -cchHHHHHHHHHhhhcCcEEEEeccC
Q 039292 316 -KNSYRWKNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 316 -~~s~~~~~l~~l~~~~~~rl~LTgTP 341 (520)
...+.-+.+..+....+..++.|+|=
T Consensus 255 GFe~qI~~Il~~i~~~~rQtlm~saTw 281 (519)
T KOG0331|consen 255 GFEPQIRKILSQIPRPDRQTLMFSATW 281 (519)
T ss_pred ccHHHHHHHHHhcCCCcccEEEEeeec
Confidence 56677777777733344578888874
No 75
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=98.86 E-value=5.1e-09 Score=107.74 Aligned_cols=172 Identities=20% Similarity=0.185 Sum_probs=113.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHH----HHHHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHH---
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKT----IQAITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELK--- 238 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKT----i~aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~--- 238 (520)
.+...|...|...+ .| ..+|-|.-+|+||| +.+|.-+..+.+.+..+-..|||.|+.-+ .|-..-+.
T Consensus 91 ~~teiQ~~~Ip~aL----~G-~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvg 165 (758)
T KOG0343|consen 91 KMTEIQRDTIPMAL----QG-HDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVG 165 (758)
T ss_pred cHHHHHHhhcchhc----cC-cccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHh
Confidence 67889999998776 45 46788999999999 55666667777766777789999997644 44444444
Q ss_pred HhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc--
Q 039292 239 KWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK-- 316 (520)
Q Consensus 239 ~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~-- 316 (520)
+++.--..++++|..-.-...++. ..||+|+|++.+..|.. ....|...+..++|+|||.++-..
T Consensus 166 k~h~fSaGLiiGG~~~k~E~eRi~---------~mNILVCTPGRLLQHmd----e~~~f~t~~lQmLvLDEADR~LDMGF 232 (758)
T KOG0343|consen 166 KHHDFSAGLIIGGKDVKFELERIS---------QMNILVCTPGRLLQHMD----ENPNFSTSNLQMLVLDEADRMLDMGF 232 (758)
T ss_pred hccccccceeecCchhHHHHHhhh---------cCCeEEechHHHHHHhh----hcCCCCCCcceEEEeccHHHHHHHhH
Confidence 444333445555554332222222 46999999999998764 344566678899999999998542
Q ss_pred chHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCC
Q 039292 317 NSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPD 359 (520)
Q Consensus 317 ~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~ 359 (520)
....-..+..+ ...+..+++|||+- +++.+|.- |++-+|.
T Consensus 233 k~tL~~Ii~~l-P~~RQTLLFSATqt-~svkdLaR-LsL~dP~ 272 (758)
T KOG0343|consen 233 KKTLNAIIENL-PKKRQTLLFSATQT-KSVKDLAR-LSLKDPV 272 (758)
T ss_pred HHHHHHHHHhC-Chhheeeeeecccc-hhHHHHHH-hhcCCCc
Confidence 22222233333 36677899999996 45566533 3334443
No 76
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.82 E-value=4.7e-08 Score=104.93 Aligned_cols=133 Identities=14% Similarity=0.067 Sum_probs=85.3
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGL 269 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~ 269 (520)
+|...||+|||...+.++..... .++.+||++|. ++..|+.+.|.+.++ ..+.++++...............
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~---~g~~vLvlvP~i~L~~Q~~~~l~~~f~-~~v~vlhs~~~~~er~~~~~~~~--- 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA---LGKSVLVLVPEIALTPQMIQRFKYRFG-SQVAVLHSGLSDSEKLQAWRKVK--- 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhC-CcEEEEECCCCHHHHHHHHHHHH---
Confidence 35567999999988777655533 35679999996 577899999998774 46777777644332222111111
Q ss_pred CCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccC--CcchHHH-----HHHHHHhhhcCcEEEEeccCC
Q 039292 270 PPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALK--DKNSYRW-----KNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 270 ~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik--n~~s~~~-----~~l~~l~~~~~~rl~LTgTPi 342 (520)
.+...|+|+|+..+.. .-.++++|||||.|... ......+ ..++.. ......+++||||.
T Consensus 74 ~g~~~IVVGTrsalf~------------p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~-~~~~~vil~SATPs 140 (505)
T TIGR00595 74 NGEILVVIGTRSALFL------------PFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK-KFNCPVVLGSATPS 140 (505)
T ss_pred cCCCCEEECChHHHcC------------cccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-hcCCCEEEEeCCCC
Confidence 2246899999876532 23467999999999864 2222111 111111 14566899999997
Q ss_pred C
Q 039292 343 Q 343 (520)
Q Consensus 343 ~ 343 (520)
.
T Consensus 141 l 141 (505)
T TIGR00595 141 L 141 (505)
T ss_pred H
Confidence 3
No 77
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.81 E-value=1.4e-08 Score=100.75 Aligned_cols=159 Identities=19% Similarity=0.144 Sum_probs=108.7
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHH-HHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhcC-
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQ-AITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWCP- 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~-aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p- 242 (520)
..+.+.|.+++-..+ .| +.||.+.++|+|||.. +|-++..|.. ....-..||++|+.-+ .|-...|+....
T Consensus 82 ~~PT~IQ~~aiP~~L----~g-~dvIglAeTGSGKT~afaLPIl~~LL~-~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~ 155 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVAL----GG-RDVIGLAETGSGKTGAFALPILQRLLQ-EPKLFFALVLTPTRELAQQIAEQFEALGSG 155 (476)
T ss_pred CCCchhhhhhcchhh----CC-CcEEEEeccCCCchhhhHHHHHHHHHc-CCCCceEEEecCcHHHHHHHHHHHHHhccc
Confidence 356789999998887 44 5799999999999976 4555666655 3344567999998765 456666777754
Q ss_pred -CCeEEEecCCCc-hhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--h
Q 039292 243 -SFSVLQYHGAGR-TAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN--S 318 (520)
Q Consensus 243 -~~~v~~~~g~~~-~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~--s 318 (520)
++++.++-|... ......+. ...+|+|+|++.+..+.. +.+.|.-....++|+|||.++-|.. -
T Consensus 156 iglr~~~lvGG~~m~~q~~~L~--------kkPhilVaTPGrL~dhl~----~Tkgf~le~lk~LVlDEADrlLd~dF~~ 223 (476)
T KOG0330|consen 156 IGLRVAVLVGGMDMMLQANQLS--------KKPHILVATPGRLWDHLE----NTKGFSLEQLKFLVLDEADRLLDMDFEE 223 (476)
T ss_pred cCeEEEEEecCchHHHHHHHhh--------cCCCEEEeCcHHHHHHHH----hccCccHHHhHHHhhchHHhhhhhhhHH
Confidence 456665555433 22222221 246999999999988764 2344455567789999999998743 3
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCC
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~ 343 (520)
..-+.+..+. ..++.++.|||--.
T Consensus 224 ~ld~ILk~ip-~erqt~LfsATMt~ 247 (476)
T KOG0330|consen 224 ELDYILKVIP-RERQTFLFSATMTK 247 (476)
T ss_pred HHHHHHHhcC-ccceEEEEEeecch
Confidence 4555666553 45667888999653
No 78
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.80 E-value=1.2e-07 Score=92.83 Aligned_cols=152 Identities=16% Similarity=0.185 Sum_probs=107.9
Q ss_pred CCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc
Q 039292 163 DFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC 241 (520)
Q Consensus 163 ~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~ 241 (520)
.+.++|-|+|..+-+.+.....+.. ..|+..-+|+|||-+....+.... ..++.+.|..|. .++-.-...+..-+
T Consensus 93 ~W~G~Ls~~Q~~as~~l~q~i~~k~-~~lv~AV~GaGKTEMif~~i~~al---~~G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 93 QWKGTLSPGQKKASNQLVQYIKQKE-DTLVWAVTGAGKTEMIFQGIEQAL---NQGGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred eeccccChhHHHHHHHHHHHHHhcC-cEEEEEecCCCchhhhHHHHHHHH---hcCCeEEEecCcccchHHHHHHHHHhh
Confidence 3467999999999999998888774 568888899999977666665443 367889999994 56666677788878
Q ss_pred CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccC-CcchHH
Q 039292 242 PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALK-DKNSYR 320 (520)
Q Consensus 242 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik-n~~s~~ 320 (520)
++..+.+++|.+..... ..++|+|...+.+ ....||++||||+..+= ..+-..
T Consensus 169 ~~~~I~~Lyg~S~~~fr--------------~plvVaTtHQLlr------------Fk~aFD~liIDEVDAFP~~~d~~L 222 (441)
T COG4098 169 SNCDIDLLYGDSDSYFR--------------APLVVATTHQLLR------------FKQAFDLLIIDEVDAFPFSDDQSL 222 (441)
T ss_pred ccCCeeeEecCCchhcc--------------ccEEEEehHHHHH------------HHhhccEEEEeccccccccCCHHH
Confidence 88888888887654321 2455555444433 23369999999999873 123334
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCC
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQN 344 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n 344 (520)
..++.........+|.|||||-..
T Consensus 223 ~~Av~~ark~~g~~IylTATp~k~ 246 (441)
T COG4098 223 QYAVKKARKKEGATIYLTATPTKK 246 (441)
T ss_pred HHHHHHhhcccCceEEEecCChHH
Confidence 555555444556689999999743
No 79
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.78 E-value=5.9e-08 Score=84.81 Aligned_cols=129 Identities=17% Similarity=0.224 Sum_probs=70.0
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCCC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGLP 270 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~ 270 (520)
+|-.-+|+|||-.++--+.. +.-....++||+.|+.++. +|+.+...+..+.. +...... ...
T Consensus 8 ~~d~hpGaGKTr~vlp~~~~--~~i~~~~rvLvL~PTRvva---~em~~aL~~~~~~~-~t~~~~~-----------~~~ 70 (148)
T PF07652_consen 8 VLDLHPGAGKTRRVLPEIVR--EAIKRRLRVLVLAPTRVVA---EEMYEALKGLPVRF-HTNARMR-----------THF 70 (148)
T ss_dssp EEE--TTSSTTTTHHHHHHH--HHHHTT--EEEEESSHHHH---HHHHHHTTTSSEEE-ESTTSS---------------
T ss_pred EEecCCCCCCcccccHHHHH--HHHHccCeEEEecccHHHH---HHHHHHHhcCCccc-Cceeeec-----------ccc
Confidence 67778999999876553322 2233567899999987763 44444444444322 2211111 011
Q ss_pred CCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhc--CcEEEEeccCCC
Q 039292 271 PPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNA--NQRLMLTGTPLQ 343 (520)
Q Consensus 271 ~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~--~~rl~LTgTPi~ 343 (520)
++..|-++||.++..... ......+|++||+||||-. ++.|........-.... ...+++||||--
T Consensus 71 g~~~i~vMc~at~~~~~~------~p~~~~~yd~II~DEcH~~-Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG 138 (148)
T PF07652_consen 71 GSSIIDVMCHATYGHFLL------NPCRLKNYDVIIMDECHFT-DPTSIAARGYLRELAESGEAKVIFMTATPPG 138 (148)
T ss_dssp SSSSEEEEEHHHHHHHHH------TSSCTTS-SEEEECTTT---SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT
T ss_pred CCCcccccccHHHHHHhc------CcccccCccEEEEeccccC-CHHHHhhheeHHHhhhccCeeEEEEeCCCCC
Confidence 245788999999876432 1233468999999999984 44554444333221122 357889999963
No 80
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.76 E-value=4.9e-08 Score=111.82 Aligned_cols=146 Identities=18% Similarity=0.191 Sum_probs=93.5
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhh
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAK 266 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~ 266 (520)
+||++.|-.|+|||++++-++..+... .....+++|+-. -|-.|-..+|..+........ ...+... +.....
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-~~~s~~~----Lk~~l~ 347 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-KAESTSE----LKELLE 347 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-cccCHHH----HHHHHh
Confidence 467999999999999999888877664 444456666664 566788899998875544433 2222222 222222
Q ss_pred cCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCH
Q 039292 267 AGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDL 346 (520)
Q Consensus 267 ~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~ 346 (520)
.+ ...|+|||-+.|....... .........-+||+|||||--.. ...+.+.... +...-+++||||+...-
T Consensus 348 ~~---~~~ii~TTIQKf~~~~~~~---~~~~~~~~~ivvI~DEaHRSQ~G--~~~~~~~~~~-~~a~~~gFTGTPi~~~d 418 (962)
T COG0610 348 DG---KGKIIVTTIQKFNKAVKED---ELELLKRKNVVVIIDEAHRSQYG--ELAKLLKKAL-KKAIFIGFTGTPIFKED 418 (962)
T ss_pred cC---CCcEEEEEecccchhhhcc---cccccCCCcEEEEEechhhcccc--HHHHHHHHHh-ccceEEEeeCCcccccc
Confidence 22 4589999999997743221 11123445668899999987533 3334444332 44678999999996543
Q ss_pred HH
Q 039292 347 HE 348 (520)
Q Consensus 347 ~e 348 (520)
..
T Consensus 419 ~~ 420 (962)
T COG0610 419 KD 420 (962)
T ss_pred cc
Confidence 33
No 81
>PRK14701 reverse gyrase; Provisional
Probab=98.74 E-value=1.8e-07 Score=111.61 Aligned_cols=129 Identities=16% Similarity=0.316 Sum_probs=87.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC---
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP--- 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--- 242 (520)
.+++.|..++..++ .| +.+++..+||+|||...+.++..+ ...+..+|||+|+ .|+.|....|..++.
T Consensus 79 ~pt~iQ~~~i~~il----~G-~d~li~APTGsGKTl~~~~~al~~---~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~ 150 (1638)
T PRK14701 79 EFWSIQKTWAKRIL----RG-KSFSIVAPTGMGKSTFGAFIALFL---ALKGKKCYIILPTTLLVKQTVEKIESFCEKAN 150 (1638)
T ss_pred CCCHHHHHHHHHHH----cC-CCEEEEEcCCCCHHHHHHHHHHHH---HhcCCeEEEEECHHHHHHHHHHHHHHHHhhcC
Confidence 58899999998887 44 457899999999998332222211 1234579999996 566889999988764
Q ss_pred -CCeEEEecCCCchhhhHH-HHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccC
Q 039292 243 -SFSVLQYHGAGRTAYSRE-LSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 243 -~~~v~~~~g~~~~~~~~~-~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
+..+..++|......... +..+.. +.++|+|+|.+.+.... ..+....++++|+||||++.
T Consensus 151 ~~v~v~~~~g~~s~~e~~~~~~~l~~----g~~dILV~TPgrL~~~~-------~~l~~~~i~~iVVDEAD~ml 213 (1638)
T PRK14701 151 LDVRLVYYHSNLRKKEKEEFLERIEN----GDFDILVTTAQFLARNF-------PEMKHLKFDFIFVDDVDAFL 213 (1638)
T ss_pred CceeEEEEeCCCCHHHHHHHHHHHhc----CCCCEEEECCchhHHhH-------HHHhhCCCCEEEEECceecc
Confidence 345666777654433222 222221 24799999999876532 22233679999999999884
No 82
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.74 E-value=6.3e-08 Score=107.57 Aligned_cols=165 Identities=16% Similarity=0.090 Sum_probs=91.0
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcC----
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCP---- 242 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p---- 242 (520)
.+|||.+++..++ .|..-.++..++|+|||....+++..+.........++++||.. +..|-.+++.+|.-
T Consensus 16 PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~ 91 (844)
T TIGR02621 16 PFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPD 91 (844)
T ss_pred CCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhcc
Confidence 7899999998876 44334577799999999755444443322122233445577964 55777777776652
Q ss_pred ---------------------CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcc----ccchHHHH
Q 039292 243 ---------------------SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQ----QKDDRKIL 297 (520)
Q Consensus 243 ---------------------~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~----~~~~~~~l 297 (520)
.+++..+.|...... .... .....+|+|.|.+++.+.... .......+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~--q~~~-----l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi 164 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQFADND--EWML-----DPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPL 164 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECCCChHH--HHHh-----cCCCCcEEEECHHHHcCCccccccccccccccc
Confidence 245555555432221 1111 122468999998877652210 00000001
Q ss_pred h---hcCccEEEEeCccccCCcchHHHHHHHHHh-hhc---CcEEEEeccCCC
Q 039292 298 K---RWRWSCVLMDEAHALKDKNSYRWKNLMSVA-RNA---NQRLMLTGTPLQ 343 (520)
Q Consensus 298 ~---~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~-~~~---~~rl~LTgTPi~ 343 (520)
. -.+..++|+||||..........+.+..+. ... .+.+++|||+-.
T Consensus 165 ~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ 217 (844)
T TIGR02621 165 HAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRT 217 (844)
T ss_pred hhhhhccceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCc
Confidence 1 234679999999933333332222222210 011 368999999843
No 83
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.71 E-value=2.5e-08 Score=108.44 Aligned_cols=149 Identities=18% Similarity=0.279 Sum_probs=105.9
Q ss_pred CccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh-HHHHHHHhcC
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN-WERELKKWCP 242 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~-W~~E~~~~~p 242 (520)
+.-.|-.||+.||-.|. +| ..+++|..|.+|||++|=..++.- ....++++...|.-.++| =.++|+.-+.
T Consensus 294 ~pFelD~FQk~Ai~~le----rg-~SVFVAAHTSAGKTvVAEYAiala---q~h~TR~iYTSPIKALSNQKfRDFk~tF~ 365 (1248)
T KOG0947|consen 294 YPFELDTFQKEAIYHLE----RG-DSVFVAAHTSAGKTVVAEYAIALA---QKHMTRTIYTSPIKALSNQKFRDFKETFG 365 (1248)
T ss_pred CCCCccHHHHHHHHHHH----cC-CeEEEEecCCCCcchHHHHHHHHH---HhhccceEecchhhhhccchHHHHHHhcc
Confidence 34478899999997775 45 468999999999999986655432 235678899999766655 7788887776
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc-chHHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK-NSYRW 321 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~-~s~~~ 321 (520)
+.. +++|... ..+...++|+|.+.|+++.+...+. +.. ...||+||+|.+-+- ..-.|
T Consensus 366 Dvg--LlTGDvq--------------inPeAsCLIMTTEILRsMLYrgadl---iRD--vE~VIFDEVHYiND~eRGvVW 424 (1248)
T KOG0947|consen 366 DVG--LLTGDVQ--------------INPEASCLIMTTEILRSMLYRGADL---IRD--VEFVIFDEVHYINDVERGVVW 424 (1248)
T ss_pred ccc--eeeccee--------------eCCCcceEeehHHHHHHHHhcccch---hhc--cceEEEeeeeecccccccccc
Confidence 654 5666542 2235799999999999987653332 333 567999999999652 23455
Q ss_pred HHHHHHhhhcCcEEEEeccC
Q 039292 322 KNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTP 341 (520)
..+.-...+.-..|+||||-
T Consensus 425 EEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 425 EEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred eeeeeeccccceEEEEeccC
Confidence 55554444556678999995
No 84
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.70 E-value=1.5e-07 Score=110.51 Aligned_cols=147 Identities=20% Similarity=0.195 Sum_probs=89.2
Q ss_pred EeCCCCCCHHHHHHH-HHHHHHHhC---------CCCCCEEEEeCCcchhh-HHHHHHH----h----------cCCCeE
Q 039292 192 LADEMGLGKTIQAIT-YLMLLKHLN---------NDPGPHLIVCPASVLEN-WERELKK----W----------CPSFSV 246 (520)
Q Consensus 192 LademGlGKTi~aia-~l~~l~~~~---------~~~~~~LIV~P~sll~~-W~~E~~~----~----------~p~~~v 246 (520)
++.+||+|||+.+.- +|..+.... .....+|+|+|...+.+ -.+.+.. + .+++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 356899999998754 454443321 12457899999765533 3333332 1 246788
Q ss_pred EEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc--chHHHHHH
Q 039292 247 LQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK--NSYRWKNL 324 (520)
Q Consensus 247 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~--~s~~~~~l 324 (520)
.+++|.........+.. .+.+|+|||++.+..+... + ....+ .+..+|||||+|.+.+. .+.....+
T Consensus 81 ~vrtGDt~~~eR~rll~-------~ppdILVTTPEsL~~LLts-k-~r~~L--~~Vr~VIVDE~H~L~g~kRG~~Lel~L 149 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTR-------NPPDILITTPESLYLMLTS-R-ARETL--RGVETVIIDEVHAVAGSKRGAHLALSL 149 (1490)
T ss_pred EEEECCCCHHHHHHHhc-------CCCCEEEecHHHHHHHHhh-h-hhhhh--ccCCEEEEecHHHhcccccccHHHHHH
Confidence 88998865544332211 1469999999999764321 1 12223 34789999999999753 23332333
Q ss_pred ---HHHhhhcCcEEEEeccCCCCCHHHHHH
Q 039292 325 ---MSVARNANQRLMLTGTPLQNDLHELWS 351 (520)
Q Consensus 325 ---~~l~~~~~~rl~LTgTPi~n~~~el~~ 351 (520)
..+.....++|+||||-- ++.++-.
T Consensus 150 eRL~~l~~~~~QrIgLSATI~--n~eevA~ 177 (1490)
T PRK09751 150 ERLDALLHTSAQRIGLSATVR--SASDVAA 177 (1490)
T ss_pred HHHHHhCCCCCeEEEEEeeCC--CHHHHHH
Confidence 333323467999999973 4566543
No 85
>PHA02653 RNA helicase NPH-II; Provisional
Probab=98.68 E-value=1.8e-07 Score=102.97 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=92.7
Q ss_pred CCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHH----------HHHHH--hCCCCCCEEEEeCCc-
Q 039292 162 SDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYL----------MLLKH--LNNDPGPHLIVCPAS- 228 (520)
Q Consensus 162 ~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l----------~~l~~--~~~~~~~~LIV~P~s- 228 (520)
|-....|++.|...=..++.....+ +.+|+..+||+|||.|.--++ ..+.. .....++++|++|..
T Consensus 155 ~~~~~~l~~~~~~iQ~qil~~i~~g-kdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~Prre 233 (675)
T PHA02653 155 PFSKIPLASLQPDVQLKIFEAWISR-KPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVA 233 (675)
T ss_pred ccccccCCchhHHHHHHHHHHHHhC-CCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHH
Confidence 3445578887777666666666666 578999999999998743222 11110 022456899999964
Q ss_pred chhhHHHHHHHhc-----CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCcc
Q 039292 229 VLENWERELKKWC-----PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWS 303 (520)
Q Consensus 229 ll~~W~~E~~~~~-----p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~ 303 (520)
+..|...++.+.. ++..+.+..|........ ......+++|.|...... .-..++
T Consensus 234 La~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~--------t~~k~~~Ilv~T~~L~l~------------~L~~v~ 293 (675)
T PHA02653 234 LVRLHSITLLKSLGFDEIDGSPISLKYGSIPDELIN--------TNPKPYGLVFSTHKLTLN------------KLFDYG 293 (675)
T ss_pred HHHHHHHHHHHHhCccccCCceEEEEECCcchHHhh--------cccCCCCEEEEeCccccc------------ccccCC
Confidence 4456677776533 233444444443211000 011135888888543111 123588
Q ss_pred EEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCC
Q 039292 304 CVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 304 ~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
+||+||||......-.....++.+..+.++.+++|||+-
T Consensus 294 ~VVIDEaHEr~~~~DllL~llk~~~~~~rq~ILmSATl~ 332 (675)
T PHA02653 294 TVIIDEVHEHDQIGDIIIAVARKHIDKIRSLFLMTATLE 332 (675)
T ss_pred EEEccccccCccchhHHHHHHHHhhhhcCEEEEEccCCc
Confidence 999999999754333332233333222346899999984
No 86
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.67 E-value=1.3e-07 Score=106.12 Aligned_cols=165 Identities=16% Similarity=0.212 Sum_probs=115.3
Q ss_pred CCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhc
Q 039292 163 DFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWC 241 (520)
Q Consensus 163 ~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~ 241 (520)
.+.-.|.++|.+++.-+- .+ .+++++..+|+|||+++-.++..-. ..+.+++...|.-. -.|=.++|..-+
T Consensus 115 ~~~F~LD~fQ~~a~~~Le----r~-esVlV~ApTssGKTvVaeyAi~~al---~~~qrviYTsPIKALsNQKyrdl~~~f 186 (1041)
T COG4581 115 EYPFELDPFQQEAIAILE----RG-ESVLVCAPTSSGKTVVAEYAIALAL---RDGQRVIYTSPIKALSNQKYRDLLAKF 186 (1041)
T ss_pred hCCCCcCHHHHHHHHHHh----CC-CcEEEEccCCCCcchHHHHHHHHHH---HcCCceEeccchhhhhhhHHHHHHHHh
Confidence 355689999999997775 44 5789999999999999977765442 24455999999554 455677776655
Q ss_pred C--CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc-ch
Q 039292 242 P--SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK-NS 318 (520)
Q Consensus 242 p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~-~s 318 (520)
. ...+.+++|...- .++..++++|.+.|+++.... . ........||+||+|.+... ..
T Consensus 187 gdv~~~vGL~TGDv~I--------------N~~A~clvMTTEILRnMlyrg---~--~~~~~i~~ViFDEvHyi~D~eRG 247 (1041)
T COG4581 187 GDVADMVGLMTGDVSI--------------NPDAPCLVMTTEILRNMLYRG---S--ESLRDIEWVVFDEVHYIGDRERG 247 (1041)
T ss_pred hhhhhhccceecceee--------------CCCCceEEeeHHHHHHHhccC---c--ccccccceEEEEeeeeccccccc
Confidence 4 2345666776432 346789999999999876542 1 12224567999999999753 34
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHh
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFM 356 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl 356 (520)
..|..+..+..+.-+.++||||= .|..||-..+.-+
T Consensus 248 ~VWEE~Ii~lP~~v~~v~LSATv--~N~~EF~~Wi~~~ 283 (1041)
T COG4581 248 VVWEEVIILLPDHVRFVFLSATV--PNAEEFAEWIQRV 283 (1041)
T ss_pred hhHHHHHHhcCCCCcEEEEeCCC--CCHHHHHHHHHhc
Confidence 56666666554666889999995 4566666555544
No 87
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.66 E-value=5.1e-07 Score=101.23 Aligned_cols=150 Identities=17% Similarity=0.256 Sum_probs=93.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh-HHH---------HHHHhcCC--CeEEEecCCC---
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN-WER---------ELKKWCPS--FSVLQYHGAG--- 253 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~-W~~---------E~~~~~p~--~~v~~~~g~~--- 253 (520)
.+.+..+||+|||.+++..+..|.. .-....+|||||...+.. ... .|...+++ ....+|.+..
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~-~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k 139 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQ-KYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK 139 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH-HcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc
Confidence 5678999999999999999988865 445688999999765533 222 22222322 4555665443
Q ss_pred --chhhhHHHHHHhhcC--CCCCccEEEeehhhHhhhhccccc-----------hHHHHhhcCccEEEEeCccccCCcch
Q 039292 254 --RTAYSRELSSLAKAG--LPPPFNVLLVCYSLFERHSVQQKD-----------DRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 254 --~~~~~~~~~~~~~~~--~~~~~~vlitty~~l~~~~~~~~~-----------~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
+......+..+.... ......|+|+|.++|.+....... ....+... --+||+||.|++.. ..
T Consensus 140 ~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~-~PivIiDEPh~~~~-~~ 217 (986)
T PRK15483 140 SGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAAT-RPVVIIDEPHRFPR-DN 217 (986)
T ss_pred cccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhC-CCEEEEECCCCCCc-ch
Confidence 112233444444433 112469999999999663211111 11111111 23799999999965 23
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCC
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~ 343 (520)
+.++++..+ +..+.+..|||--.
T Consensus 218 k~~~~i~~l--npl~~lrysAT~~~ 240 (986)
T PRK15483 218 KFYQAIEAL--KPQMIIRFGATFPD 240 (986)
T ss_pred HHHHHHHhc--CcccEEEEeeecCC
Confidence 467888777 77788889999854
No 88
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=98.64 E-value=4e-07 Score=100.27 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=90.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcC--C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCP--S 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~ 243 (520)
.|+|||...+..+.. + .|.|....||.|||++++..+. +.. ..+..++||+|+. |..+|..++..++. +
T Consensus 68 glrpydVQlig~l~l----~-~G~Iaem~TGeGKTLta~Lpa~-l~a--L~g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 68 GMFPYDVQVLGAIVL----H-QGNIAEMKTGEGKTLTATMPLY-LNA--LTGKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CCCccHHHHHHHHHh----c-CCceeEecCCcchHHHHHHHHH-HHh--hcCCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 478888777766652 2 3569999999999998765542 222 2345699999976 45666666654432 4
Q ss_pred CeEEEe-cCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccCCcchHH
Q 039292 244 FSVLQY-HGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALKDKNSYR 320 (520)
Q Consensus 244 ~~v~~~-~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ikn~~s~~ 320 (520)
+.+.+. .|.............. ...+|+++|.+.|........ .....+....+.++|+||||.+.-.
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~-----y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD---- 210 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKI-----YNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD---- 210 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHh-----CCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc----
Confidence 555443 3322111111111111 136999999999843211000 0111122346889999999987322
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHH
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQNDLHELWSLL 353 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll 353 (520)
.++.-+++||.|-.. ..+|..+
T Consensus 211 ---------eartpliisg~~~~~--~~~y~~~ 232 (762)
T TIGR03714 211 ---------SAQTPLVISGAPRVQ--SNLYHIA 232 (762)
T ss_pred ---------cCcCCeeeeCCCccc--hHHHHHH
Confidence 344457788876433 3355544
No 89
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=98.62 E-value=6e-07 Score=101.18 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=107.5
Q ss_pred CccCCcHHHHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchh-hHHHHHHHh
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLE-NWERELKKW 240 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~-~W~~E~~~~ 240 (520)
|.-.-.|-|..+|+....-..++. -. ++|.++|-|||-+|+=.+.. .-.+++-+.|+||+.++. |-.+.|..-
T Consensus 591 FPyeET~DQl~AI~eVk~DM~~~kpMDR-LiCGDVGFGKTEVAmRAAFk---AV~~GKQVAvLVPTTlLA~QHy~tFkeR 666 (1139)
T COG1197 591 FPYEETPDQLKAIEEVKRDMESGKPMDR-LICGDVGFGKTEVAMRAAFK---AVMDGKQVAVLVPTTLLAQQHYETFKER 666 (1139)
T ss_pred CCCcCCHHHHHHHHHHHHHhccCCcchh-eeecCcCCcHHHHHHHHHHH---HhcCCCeEEEEcccHHhHHHHHHHHHHH
Confidence 344667899999999886555442 13 88999999999888654422 234568899999988874 466667655
Q ss_pred cCCCe--EEEecCCCchhhhHH-HHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc
Q 039292 241 CPSFS--VLQYHGAGRTAYSRE-LSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN 317 (520)
Q Consensus 241 ~p~~~--v~~~~g~~~~~~~~~-~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~ 317 (520)
+-++. |-++..-...+.... +..+. .+..+|||=|+..+.+. +...+.+++||||=||+.-..
T Consensus 667 F~~fPV~I~~LSRF~s~kE~~~il~~la----~G~vDIvIGTHrLL~kd----------v~FkdLGLlIIDEEqRFGVk~ 732 (1139)
T COG1197 667 FAGFPVRIEVLSRFRSAKEQKEILKGLA----EGKVDIVIGTHRLLSKD----------VKFKDLGLLIIDEEQRFGVKH 732 (1139)
T ss_pred hcCCCeeEEEecccCCHHHHHHHHHHHh----cCCccEEEechHhhCCC----------cEEecCCeEEEechhhcCccH
Confidence 54443 333333333322222 22322 23679999999888653 234467899999999996444
Q ss_pred hHHHHHHHHHhhhcCcEEEEeccCCCCCHH
Q 039292 318 SYRWKNLMSVARNANQRLMLTGTPLQNDLH 347 (520)
Q Consensus 318 s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~ 347 (520)
-..++.+. ..-..+-||||||+..+.
T Consensus 733 ---KEkLK~Lr-~~VDvLTLSATPIPRTL~ 758 (1139)
T COG1197 733 ---KEKLKELR-ANVDVLTLSATPIPRTLN 758 (1139)
T ss_pred ---HHHHHHHh-ccCcEEEeeCCCCcchHH
Confidence 34555552 456788899999998864
No 90
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.61 E-value=4.9e-07 Score=99.67 Aligned_cols=154 Identities=16% Similarity=0.225 Sum_probs=96.4
Q ss_pred CceEEeCCCCCCHHHHHHHHH-HHHHHh------CCCCCCEEEEeCCcch-----hhHHHHHHHhcCCCeEEEecCCCch
Q 039292 188 AGAILADEMGLGKTIQAITYL-MLLKHL------NNDPGPHLIVCPASVL-----ENWERELKKWCPSFSVLQYHGAGRT 255 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l-~~l~~~------~~~~~~~LIV~P~sll-----~~W~~E~~~~~p~~~v~~~~g~~~~ 255 (520)
..+|++.++|+|||..|.-.| ..++.. ..+.-+++.|+|.-.+ .+|...|.-| ++.|.-++|....
T Consensus 127 eNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~~--gi~v~ELTGD~ql 204 (1230)
T KOG0952|consen 127 ENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAPL--GISVRELTGDTQL 204 (1230)
T ss_pred CCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcccc--cceEEEecCcchh
Confidence 468999999999998775444 344321 1244578999995433 3455555444 5788889998754
Q ss_pred hhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHH-----HHHHH--h
Q 039292 256 AYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWK-----NLMSV--A 328 (520)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~-----~l~~l--~ 328 (520)
...+. . ..+|+|||++.+--.......+..++. ...+|||||+|.+......... .++.. .
T Consensus 205 ~~tei-~---------~tqiiVTTPEKwDvvTRk~~~d~~l~~--~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vess 272 (1230)
T KOG0952|consen 205 TKTEI-A---------DTQIIVTTPEKWDVVTRKSVGDSALFS--LVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESS 272 (1230)
T ss_pred hHHHH-H---------hcCEEEecccceeeeeeeeccchhhhh--heeeEEeeeehhhcCcccchHHHHHHHHHHHHHhh
Confidence 43332 1 369999999987543333333333333 3679999999999875543333 22221 1
Q ss_pred hhcCcEEEEeccCCCCCHHHHHHHHHHhCCCC
Q 039292 329 RNANQRLMLTGTPLQNDLHELWSLLEFMMPDL 360 (520)
Q Consensus 329 ~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~ 360 (520)
...-+.++||||-- .+..+..||..+.
T Consensus 273 qs~IRivgLSATlP-----N~eDvA~fL~vn~ 299 (1230)
T KOG0952|consen 273 QSMIRIVGLSATLP-----NYEDVARFLRVNP 299 (1230)
T ss_pred hhheEEEEeeccCC-----CHHHHHHHhcCCC
Confidence 23445688999953 2444577887653
No 91
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=4.6e-07 Score=97.74 Aligned_cols=163 Identities=20% Similarity=0.216 Sum_probs=106.2
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHH-HHHHHHHHHH-hCCCCCCEEEEeCCcc-hhhHHHHHHHhcC-
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQ-AITYLMLLKH-LNNDPGPHLIVCPASV-LENWERELKKWCP- 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~-aia~l~~l~~-~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p- 242 (520)
...|.|..++..++ .| +.+|..+.+|+|||.. +|-++..+.. ......+.||++|+.. ..|-.+++..+..
T Consensus 51 ~pt~IQ~~~IP~~l----~g-~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~ 125 (513)
T COG0513 51 EPTPIQLAAIPLIL----AG-RDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKN 125 (513)
T ss_pred CCCHHHHHHHHHHh----CC-CCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhh
Confidence 56799999998888 44 5689999999999954 3333444321 1112222899999764 5667777776653
Q ss_pred --CCeEEEecCC-CchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc--c
Q 039292 243 --SFSVLQYHGA-GRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK--N 317 (520)
Q Consensus 243 --~~~v~~~~g~-~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~--~ 317 (520)
.+++..+.|. ........+. . +.+|||.|++.+..+... ..+......++|+|||.++-+. .
T Consensus 126 ~~~~~~~~i~GG~~~~~q~~~l~---~-----~~~ivVaTPGRllD~i~~-----~~l~l~~v~~lVlDEADrmLd~Gf~ 192 (513)
T COG0513 126 LGGLRVAVVYGGVSIRKQIEALK---R-----GVDIVVATPGRLLDLIKR-----GKLDLSGVETLVLDEADRMLDMGFI 192 (513)
T ss_pred cCCccEEEEECCCCHHHHHHHHh---c-----CCCEEEECccHHHHHHHc-----CCcchhhcCEEEeccHhhhhcCCCH
Confidence 4555555444 3332222222 2 369999999999876632 2456667889999999999764 2
Q ss_pred hHHHHHHHHHhhhcCcEEEEeccCCCCCHHHH
Q 039292 318 SYRWKNLMSVARNANQRLMLTGTPLQNDLHEL 349 (520)
Q Consensus 318 s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el 349 (520)
..+...+..+. ...+.++.|||--. .+.++
T Consensus 193 ~~i~~I~~~~p-~~~qtllfSAT~~~-~i~~l 222 (513)
T COG0513 193 DDIEKILKALP-PDRQTLLFSATMPD-DIREL 222 (513)
T ss_pred HHHHHHHHhCC-cccEEEEEecCCCH-HHHHH
Confidence 23344444432 34678999999876 44444
No 92
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.58 E-value=6.7e-07 Score=90.93 Aligned_cols=136 Identities=18% Similarity=0.274 Sum_probs=91.6
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHH-HHHHH--hCCCCC--CEEEEeCCcc----hhhHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYL-MLLKH--LNNDPG--PHLIVCPASV----LENWERE 236 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l-~~l~~--~~~~~~--~~LIV~P~sl----l~~W~~E 236 (520)
..+.|-|..+|-.++ .+ ..+++-..||+|||+.-+.-+ ..+.. ....++ ..|||+|+.- +.+....
T Consensus 27 ~~mTpVQa~tIPlll----~~-KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~ 101 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLL----KN-KDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQP 101 (567)
T ss_pred cccCHHHHhhhHHHh----cC-CceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHH
Confidence 468899999998887 33 567888899999996543332 22211 222233 4699999654 4556777
Q ss_pred HHHhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC
Q 039292 237 LKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD 315 (520)
Q Consensus 237 ~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn 315 (520)
|..++++++..++.|... ....+..+... +.+|+|.|++.+...... ....+......++|+|||.++-.
T Consensus 102 F~~~l~~l~~~l~vGG~~--v~~Di~~fkee----~~nIlVgTPGRL~di~~~---~~~~l~~rsLe~LVLDEADrLld 171 (567)
T KOG0345|consen 102 FLEHLPNLNCELLVGGRS--VEEDIKTFKEE----GPNILVGTPGRLLDILQR---EAEKLSFRSLEILVLDEADRLLD 171 (567)
T ss_pred HHHhhhccceEEEecCcc--HHHHHHHHHHh----CCcEEEeCchhHHHHHhc---hhhhccccccceEEecchHhHhc
Confidence 888888999888887733 22334444333 469999999999875432 22334444688999999999853
No 93
>PRK09694 helicase Cas3; Provisional
Probab=98.56 E-value=1.5e-06 Score=98.29 Aligned_cols=179 Identities=15% Similarity=0.041 Sum_probs=101.9
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHH----h
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKK----W 240 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~----~ 240 (520)
...+|+|..+..-. .+.+-.||-.+||+|||..|+.++..+.. .+..+.+++..|+..+ .+-...+.. .
T Consensus 285 ~~p~p~Q~~~~~~~-----~~pgl~ileApTGsGKTEAAL~~A~~l~~-~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 285 YQPRQLQTLVDALP-----LQPGLTIIEAPTGSGKTEAALAYAWRLID-QGLADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCChHHHHHHHhhc-----cCCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 36899999763221 12123688999999999999988876654 4456789999997654 344444443 4
Q ss_pred cCCCeEEEecCCCchhhh-HH-----------------HHHHhhc--CCCCCccEEEeehhhHhhhhccccchHHHHhhc
Q 039292 241 CPSFSVLQYHGAGRTAYS-RE-----------------LSSLAKA--GLPPPFNVLLVCYSLFERHSVQQKDDRKILKRW 300 (520)
Q Consensus 241 ~p~~~v~~~~g~~~~~~~-~~-----------------~~~~~~~--~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~ 300 (520)
++...+.+.||...-... .. ...|... ...--..|+|+|.+.+.......+...-.....
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 455667777776431100 00 0011110 000125899999988875333222111112233
Q ss_pred CccEEEEeCccccCCcch-HHHHHHHHHhhhcCcEEEEeccCCCCCHHHHH
Q 039292 301 RWSCVLMDEAHALKDKNS-YRWKNLMSVARNANQRLMLTGTPLQNDLHELW 350 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s-~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~ 350 (520)
.-.+|||||+|.+=...+ .....+..+.......|+||||+-..-..+|.
T Consensus 439 a~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~ 489 (878)
T PRK09694 439 GRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLL 489 (878)
T ss_pred ccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHH
Confidence 456899999999832222 22233333333346689999998654444443
No 94
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.53 E-value=8e-07 Score=95.03 Aligned_cols=173 Identities=20% Similarity=0.219 Sum_probs=119.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC-CcchhhHHHHHHHhcCCCe
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP-ASVLENWERELKKWCPSFS 245 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P-~sll~~W~~E~~~~~p~~~ 245 (520)
..||=|.++|..++ .+ +.+|.-.+||.||++.- .|-.+. ..|.+|||.| .+|+..-.+.+.... +.
T Consensus 17 ~FR~gQ~evI~~~l----~g-~d~lvvmPTGgGKSlCy--QiPAll----~~G~TLVVSPLiSLM~DQV~~l~~~G--i~ 83 (590)
T COG0514 17 SFRPGQQEIIDALL----SG-KDTLVVMPTGGGKSLCY--QIPALL----LEGLTLVVSPLISLMKDQVDQLEAAG--IR 83 (590)
T ss_pred ccCCCHHHHHHHHH----cC-CcEEEEccCCCCcchHh--hhHHHh----cCCCEEEECchHHHHHHHHHHHHHcC--ce
Confidence 68899999999998 44 56899999999999632 222221 2679999999 577777888888764 55
Q ss_pred EEEecCCCchh-hhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc---hHHH
Q 039292 246 VLQYHGAGRTA-YSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN---SYRW 321 (520)
Q Consensus 246 v~~~~g~~~~~-~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~---s~~~ 321 (520)
+..+++.-... ....+..+.. +...++..+++.+.... ....+......+++|||||.+..-. -.-|
T Consensus 84 A~~lnS~l~~~e~~~v~~~l~~----g~~klLyisPErl~~~~-----f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y 154 (590)
T COG0514 84 AAYLNSTLSREERQQVLNQLKS----GQLKLLYISPERLMSPR-----FLELLKRLPISLVAIDEAHCISQWGHDFRPDY 154 (590)
T ss_pred eehhhcccCHHHHHHHHHHHhc----CceeEEEECchhhcChH-----HHHHHHhCCCceEEechHHHHhhcCCccCHhH
Confidence 55556553322 2222222222 24799999999998742 5566778899999999999985421 1123
Q ss_pred HHHHHHhh--hcCcEEEEeccCCCCCHHHHHHHHHHhCCCCC
Q 039292 322 KNLMSVAR--NANQRLMLTGTPLQNDLHELWSLLEFMMPDLF 361 (520)
Q Consensus 322 ~~l~~l~~--~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~ 361 (520)
..+..+.. ....+++||||--..--.|+...|..-.+..|
T Consensus 155 ~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~ 196 (590)
T COG0514 155 RRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIF 196 (590)
T ss_pred HHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceE
Confidence 33333311 34578999999988888899888887766544
No 95
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.38 E-value=1.4e-06 Score=89.79 Aligned_cols=159 Identities=21% Similarity=0.259 Sum_probs=100.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHH-HHHHh----CCCCCC-EEEEeCCcc-hhhHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLM-LLKHL----NNDPGP-HLIVCPASV-LENWERELKK 239 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~-~l~~~----~~~~~~-~LIV~P~sl-l~~W~~E~~~ 239 (520)
.+...|..+|--++. | +.+++-..+|+|||+.-+.-+. .|... .+..|+ .|||+|+.- ..|-.+-+.+
T Consensus 159 ~pTsVQkq~IP~lL~----g-rD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qK 233 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLE----G-RDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQK 233 (708)
T ss_pred ccchHhhcchhhhhc----C-cceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHH
Confidence 355678888888873 4 5689999999999976444333 33221 123343 599999754 4555555555
Q ss_pred hcCCC----eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC
Q 039292 240 WCPSF----SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD 315 (520)
Q Consensus 240 ~~p~~----~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn 315 (520)
....+ ..++++|..+.....++.+ +.+|+|.|++.+..|.. +...+...+...||+|||.+|..
T Consensus 234 Ll~~~hWIVPg~lmGGEkkKSEKARLRK--------GiNILIgTPGRLvDHLk----nT~~i~~s~LRwlVlDEaDrlle 301 (708)
T KOG0348|consen 234 LLKPFHWIVPGVLMGGEKKKSEKARLRK--------GINILIGTPGRLVDHLK----NTKSIKFSRLRWLVLDEADRLLE 301 (708)
T ss_pred HhcCceEEeeceeecccccccHHHHHhc--------CceEEEcCchHHHHHHh----ccchheeeeeeEEEecchhHHHh
Confidence 54322 2344566666555555543 68999999999998765 45556666778899999999853
Q ss_pred --cchHHHHHHHHH---hh---h------cCcEEEEeccCC
Q 039292 316 --KNSYRWKNLMSV---AR---N------ANQRLMLTGTPL 342 (520)
Q Consensus 316 --~~s~~~~~l~~l---~~---~------~~~rl~LTgTPi 342 (520)
..-.+.+.+..+ .. + ....++||||--
T Consensus 302 LGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLt 342 (708)
T KOG0348|consen 302 LGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLT 342 (708)
T ss_pred ccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhH
Confidence 222333333333 10 1 134688999864
No 96
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=98.34 E-value=7.6e-06 Score=91.12 Aligned_cols=127 Identities=14% Similarity=0.150 Sum_probs=78.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh----HHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN----WERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~----W~~E~~~~~p 242 (520)
.++||+...+..+... .|.|....||.|||++++..+... ...+..++||+|+..|.. |...+.+++
T Consensus 76 g~~p~~vQl~~~~~l~-----~G~Iaem~TGeGKTL~a~lp~~l~---al~G~~v~VvTpt~~LA~qd~e~~~~l~~~l- 146 (790)
T PRK09200 76 GMRPYDVQLIGALVLH-----EGNIAEMQTGEGKTLTATMPLYLN---ALEGKGVHLITVNDYLAKRDAEEMGQVYEFL- 146 (790)
T ss_pred CCCCchHHHHhHHHHc-----CCceeeecCCCcchHHHHHHHHHH---HHcCCCeEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 3455554444444321 355999999999999765443322 124668999999876633 777777776
Q ss_pred CCeEEEecCCCc-hhhhHHHHHHhhcCCCCCccEEEeehhhH-----hhhhccccchHHHHhhcCccEEEEeCccccC
Q 039292 243 SFSVLQYHGAGR-TAYSRELSSLAKAGLPPPFNVLLVCYSLF-----ERHSVQQKDDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 243 ~~~v~~~~g~~~-~~~~~~~~~~~~~~~~~~~~vlitty~~l-----~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
++.+.++.|... ....+. . ...+|++.|...+ +.+... .........+.++|+||||++.
T Consensus 147 Gl~v~~i~g~~~~~~~r~~-~--------y~~dIvygT~~~l~fDyLrd~~~~---~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 147 GLTVGLNFSDIDDASEKKA-I--------YEADIIYTTNSELGFDYLRDNLAD---SKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred CCeEEEEeCCCCcHHHHHH-h--------cCCCEEEECCccccchhHHhcccc---chhhhcccccceEEEeccccce
Confidence 677777766544 222211 1 1369999997766 332211 1122333568999999999884
No 97
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=98.34 E-value=7.5e-06 Score=91.27 Aligned_cols=151 Identities=16% Similarity=0.201 Sum_probs=93.3
Q ss_pred CCccC--CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch----hhHHHH
Q 039292 163 DFQPV--LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL----ENWERE 236 (520)
Q Consensus 163 ~~~~~--Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll----~~W~~E 236 (520)
++... |+|||...+.-+. .+ .|.|.-..+|+|||+.++.-+..... .+.+++||+|+.-| .+|...
T Consensus 86 G~~~p~~~tp~qvQ~I~~i~----l~-~gvIAeaqTGeGKTLAf~LP~l~~aL---~g~~v~IVTpTrELA~Qdae~m~~ 157 (970)
T PRK12899 86 GYHQQWDMVPYDVQILGAIA----MH-KGFITEMQTGEGKTLTAVMPLYLNAL---TGKPVHLVTVNDYLAQRDCEWVGS 157 (970)
T ss_pred cccCCCCCChHHHHHhhhhh----cC-CCeEEEeCCCCChHHHHHHHHHHHHh---hcCCeEEEeCCHHHHHHHHHHHHH
Confidence 44455 8999999987776 33 57788999999999876544332211 22468999996544 348888
Q ss_pred HHHhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhH-hhhhccccch--HHHHhhcCccEEEEeCcccc
Q 039292 237 LKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLF-ERHSVQQKDD--RKILKRWRWSCVLMDEAHAL 313 (520)
Q Consensus 237 ~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l-~~~~~~~~~~--~~~l~~~~~~~vIiDEaH~i 313 (520)
+.+|. ++++.++.|........ ... ..+|++.|.+.| .......... ........+.++|||||..+
T Consensus 158 L~k~l-GLsV~~i~GG~~~~eq~--~~y-------~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsm 227 (970)
T PRK12899 158 VLRWL-GLTTGVLVSGSPLEKRK--EIY-------QCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSI 227 (970)
T ss_pred HHhhc-CCeEEEEeCCCCHHHHH--HHc-------CCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhh
Confidence 88776 46666655543322211 111 259999999988 3322211001 11122346789999999977
Q ss_pred CCcchHHHHHHHHHhhhcCcEEEEeccCCCC
Q 039292 314 KDKNSYRWKNLMSVARNANQRLMLTGTPLQN 344 (520)
Q Consensus 314 kn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n 344 (520)
-- ..++.=+++||.+-..
T Consensus 228 Li-------------DEArTPLIISg~~~~~ 245 (970)
T PRK12899 228 LI-------------DEARTPLIISGPGEKH 245 (970)
T ss_pred hh-------------hccCCceeeeCCCccc
Confidence 31 2455558888876433
No 98
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=98.32 E-value=4.1e-06 Score=86.78 Aligned_cols=160 Identities=18% Similarity=0.189 Sum_probs=96.0
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHH-HHHHHHHHHHhC------------CCCCCEEEEeCCc-chhhHH
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQ-AITYLMLLKHLN------------NDPGPHLIVCPAS-VLENWE 234 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~-aia~l~~l~~~~------------~~~~~~LIV~P~s-ll~~W~ 234 (520)
.|.|...+.... .|...+|-|.++|+|||+. +|-++..+.+.. ....-.|||+|+. |..|..
T Consensus 205 t~IQsl~lp~ai----~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~ 280 (731)
T KOG0347|consen 205 TEIQSLVLPAAI----RGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVK 280 (731)
T ss_pred ccchhhcccHhh----ccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHH
Confidence 355655554444 3323467899999999953 233333222211 1111269999975 567788
Q ss_pred HHHHHhc--CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhc-CccEEEEeCcc
Q 039292 235 RELKKWC--PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRW-RWSCVLMDEAH 311 (520)
Q Consensus 235 ~E~~~~~--p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~-~~~~vIiDEaH 311 (520)
..|...+ +++++..+.|.-......++... ..+|||+|++.|-..... +...+..+ ...|+|+||+.
T Consensus 281 ~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~-------~p~IVVATPGRlweli~e---~n~~l~~~k~vkcLVlDEaD 350 (731)
T KOG0347|consen 281 QHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ-------RPDIVVATPGRLWELIEE---DNTHLGNFKKVKCLVLDEAD 350 (731)
T ss_pred HHHHHhccccCeEEEEeechhHHHHHHHHHhc-------CCCEEEecchHHHHHHHh---hhhhhhhhhhceEEEEccHH
Confidence 8888776 46777777776544433333221 359999999999765433 22223332 46899999999
Q ss_pred ccC--CcchHHHHHHHHHhh----hcCcEEEEeccCC
Q 039292 312 ALK--DKNSYRWKNLMSVAR----NANQRLMLTGTPL 342 (520)
Q Consensus 312 ~ik--n~~s~~~~~l~~l~~----~~~~rl~LTgTPi 342 (520)
|+- +.-....+.+..+.. ..+..+++|||--
T Consensus 351 RmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt 387 (731)
T KOG0347|consen 351 RMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLT 387 (731)
T ss_pred HHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEee
Confidence 984 333444455554421 2345799999963
No 99
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=98.31 E-value=6.1e-07 Score=98.33 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=75.8
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh----HHHHHHHhcCC
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN----WERELKKWCPS 243 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~----W~~E~~~~~p~ 243 (520)
++||+...+..+.. . .|.|.-..||.|||+.++..+ ++... .+..++||+|+..|.. |...+-+++ +
T Consensus 55 ~~p~~vQlig~~~l----~-~G~Iaem~TGeGKTLva~lpa-~l~aL--~G~~V~VvTpt~~LA~qdae~~~~l~~~L-G 125 (745)
T TIGR00963 55 MRPFDVQLIGGIAL----H-KGKIAEMKTGEGKTLTATLPA-YLNAL--TGKGVHVVTVNDYLAQRDAEWMGQVYRFL-G 125 (745)
T ss_pred CCccchHHhhhhhh----c-CCceeeecCCCccHHHHHHHH-HHHHH--hCCCEEEEcCCHHHHHHHHHHHHHHhccC-C
Confidence 45554444444432 1 355888999999998764333 22222 2457999999876633 666666665 4
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccC
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
+.+.+..|........... ..+|++.|...|........ .....+....+.++|+||+|++.
T Consensus 126 Lsv~~i~g~~~~~~r~~~y---------~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 126 LSVGLILSGMSPEERREAY---------ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred CeEEEEeCCCCHHHHHHhc---------CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 7777766654322111110 25899999987732221111 01123444568999999999984
No 100
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.30 E-value=6.5e-06 Score=92.91 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=79.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhcC---CCeEE-EecCCCchhhhHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWCP---SFSVL-QYHGAGRTAYSRELS 262 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p---~~~v~-~~~g~~~~~~~~~~~ 262 (520)
+.+|+..++|+|||.+..-++.... ...+.++|+.|..++ .+..+.+.+... +..|. .+.+...
T Consensus 18 ~~vIi~a~TGSGKTT~vpl~lL~~~---~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~-------- 86 (819)
T TIGR01970 18 PQVVLEAPPGAGKSTAVPLALLDAP---GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENK-------- 86 (819)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhh---ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccc--------
Confidence 4689999999999998876654321 245689999997664 444444543321 12221 1112111
Q ss_pred HHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcc-ccCCcchH--HHHHHHHHhhhcCcEEEEec
Q 039292 263 SLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAH-ALKDKNSY--RWKNLMSVARNANQRLMLTG 339 (520)
Q Consensus 263 ~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH-~ikn~~s~--~~~~l~~l~~~~~~rl~LTg 339 (520)
......|+++|.+.+.+.... ...-..+++|||||+| +.-+..-. ..+.+........+.++|||
T Consensus 87 ------~s~~t~I~v~T~G~Llr~l~~------d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSA 154 (819)
T TIGR01970 87 ------VSRRTRLEVVTEGILTRMIQD------DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSA 154 (819)
T ss_pred ------cCCCCcEEEECCcHHHHHHhh------CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeC
Confidence 112358999999998874421 1123468999999999 44443211 11222222223456789999
Q ss_pred cCCCCCHH
Q 039292 340 TPLQNDLH 347 (520)
Q Consensus 340 TPi~n~~~ 347 (520)
|.-...+.
T Consensus 155 Tl~~~~l~ 162 (819)
T TIGR01970 155 TLDGERLS 162 (819)
T ss_pred CCCHHHHH
Confidence 98654433
No 101
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.23 E-value=9.5e-06 Score=77.82 Aligned_cols=68 Identities=24% Similarity=0.303 Sum_probs=47.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCc-eEEeCCCCCCHHHHHHHHHHHHH-----HhCCCCCCEEEEeCCc-chhhHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAG-AILADEMGLGKTIQAITYLMLLK-----HLNNDPGPHLIVCPAS-VLENWERELKK 239 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g-~ILademGlGKTi~aia~l~~l~-----~~~~~~~~~LIV~P~s-ll~~W~~E~~~ 239 (520)
+|-+.|..+|..++ .. ++ +++..++|+|||.+..+++..+. ......+++||++|.+ .+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~~----~~-~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSAL----SS-NGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHC----TS-SE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH----cC-CCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47789999998776 22 34 78999999999988877777662 2256788999999965 46777676666
No 102
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=98.20 E-value=2e-05 Score=86.00 Aligned_cols=127 Identities=17% Similarity=0.061 Sum_probs=80.3
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchh----hHHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLE----NWERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~----~W~~E~~~~~p 242 (520)
..+|-|..|+-.|+ .|.|.-..||.|||+.++..+... ...+..++||+|+.-|. +|...+-+++
T Consensus 103 ~p~~VQ~~~~~~ll-------~G~Iae~~TGeGKTla~~lp~~~~---al~G~~v~VvTptreLA~qdae~~~~l~~~l- 171 (656)
T PRK12898 103 RHFDVQLMGGLALL-------SGRLAEMQTGEGKTLTATLPAGTA---ALAGLPVHVITVNDYLAERDAELMRPLYEAL- 171 (656)
T ss_pred CCChHHHHHHHHHh-------CCCeeeeeCCCCcHHHHHHHHHHH---hhcCCeEEEEcCcHHHHHHHHHHHHHHHhhc-
Confidence 56788999987776 344889999999998876544332 22356899999987664 3777777765
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccc---------------------hHHHHhhcC
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKD---------------------DRKILKRWR 301 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~---------------------~~~~l~~~~ 301 (520)
++.+.+..|...... +... ...+|++.|-..|.-+.....- ....+....
T Consensus 172 Glsv~~i~gg~~~~~-r~~~--------y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~ 242 (656)
T PRK12898 172 GLTVGCVVEDQSPDE-RRAA--------YGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRG 242 (656)
T ss_pred CCEEEEEeCCCCHHH-HHHH--------cCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccc
Confidence 567766666543221 1111 1458999887666432211110 112223346
Q ss_pred ccEEEEeCcccc
Q 039292 302 WSCVLMDEAHAL 313 (520)
Q Consensus 302 ~~~vIiDEaH~i 313 (520)
++++||||+..+
T Consensus 243 ~~~aIvDEvDSi 254 (656)
T PRK12898 243 LHFAIVDEADSV 254 (656)
T ss_pred cceeEeecccce
Confidence 899999999977
No 103
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=98.16 E-value=1.4e-05 Score=90.35 Aligned_cols=136 Identities=16% Similarity=0.153 Sum_probs=76.9
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhc---CCCeEE-EecCCCchhhhHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWC---PSFSVL-QYHGAGRTAYSRELS 262 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~---p~~~v~-~~~g~~~~~~~~~~~ 262 (520)
+.+|+..++|+|||.+..-++... ....+.+||++|..++ .|..+.+.... .+..+. .+.+....
T Consensus 21 ~~vvv~A~TGSGKTt~~pl~lL~~---~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~------- 90 (812)
T PRK11664 21 PQVLLKAPTGAGKSTWLPLQLLQH---GGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKV------- 90 (812)
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHc---CCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcccc-------
Confidence 458999999999999876444321 2234689999997664 44445454332 122222 22222111
Q ss_pred HHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccc-cCCcchHH--HHHHHHHhhhcCcEEEEec
Q 039292 263 SLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHA-LKDKNSYR--WKNLMSVARNANQRLMLTG 339 (520)
Q Consensus 263 ~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~-ikn~~s~~--~~~l~~l~~~~~~rl~LTg 339 (520)
.....|+++|.+.+.+.... ...-..+++|||||+|. .-+.+-.. .+.+........+.++|||
T Consensus 91 -------~~~t~I~v~T~G~Llr~l~~------d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSA 157 (812)
T PRK11664 91 -------GPNTRLEVVTEGILTRMIQR------DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSA 157 (812)
T ss_pred -------CCCCcEEEEChhHHHHHHhh------CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEec
Confidence 11347999999998764321 12234689999999996 22222111 1111111113346799999
Q ss_pred cCCCCCH
Q 039292 340 TPLQNDL 346 (520)
Q Consensus 340 TPi~n~~ 346 (520)
|.-...+
T Consensus 158 Tl~~~~l 164 (812)
T PRK11664 158 TLDNDRL 164 (812)
T ss_pred CCCHHHH
Confidence 9865433
No 104
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.14 E-value=1e-05 Score=83.07 Aligned_cols=139 Identities=22% Similarity=0.242 Sum_probs=83.3
Q ss_pred ceEEeCCCCCCHHHHHHHH-HHHH---HHhCCCCCCE-EEEeCC-cchhhHHHHHHHhc--CCCeEEEec-CCCchhhhH
Q 039292 189 GAILADEMGLGKTIQAITY-LMLL---KHLNNDPGPH-LIVCPA-SVLENWERELKKWC--PSFSVLQYH-GAGRTAYSR 259 (520)
Q Consensus 189 g~ILademGlGKTi~aia~-l~~l---~~~~~~~~~~-LIV~P~-sll~~W~~E~~~~~--p~~~v~~~~-g~~~~~~~~ 259 (520)
.+|--.-+|+|||-.-+-- +..+ .......+|+ ||+||+ .+..|-..|.++|+ -+++++..+ |.....-..
T Consensus 262 dvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k 341 (731)
T KOG0339|consen 262 DVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSK 341 (731)
T ss_pred cchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHH
Confidence 3455567999999532211 1111 1223455676 667885 56677888888885 356655554 444333223
Q ss_pred HHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc--chHHHHHHHHHhhhcCcEEEE
Q 039292 260 ELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK--NSYRWKNLMSVARNANQRLML 337 (520)
Q Consensus 260 ~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~--~s~~~~~l~~l~~~~~~rl~L 337 (520)
.+. .+..+||+|++.+..++ ..+...-.+..++||||+.++... ..+. +.+..-...-++.|++
T Consensus 342 ~Lk--------~g~EivVaTPgRlid~V-----kmKatn~~rvS~LV~DEadrmfdmGfe~qV-rSI~~hirpdrQtllF 407 (731)
T KOG0339|consen 342 ELK--------EGAEIVVATPGRLIDMV-----KMKATNLSRVSYLVLDEADRMFDMGFEPQV-RSIKQHIRPDRQTLLF 407 (731)
T ss_pred hhh--------cCCeEEEechHHHHHHH-----HhhcccceeeeEEEEechhhhhccccHHHH-HHHHhhcCCcceEEEe
Confidence 222 25799999999998754 223333446789999999998642 2222 3333323355678999
Q ss_pred eccC
Q 039292 338 TGTP 341 (520)
Q Consensus 338 TgTP 341 (520)
|+|-
T Consensus 408 saTf 411 (731)
T KOG0339|consen 408 SATF 411 (731)
T ss_pred eccc
Confidence 9985
No 105
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.12 E-value=5.9e-06 Score=88.38 Aligned_cols=149 Identities=19% Similarity=0.343 Sum_probs=100.9
Q ss_pred CCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHH-HHHHhCCCCCCEEEEeCCcchhh-HHHHHHHh
Q 039292 163 DFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLM-LLKHLNNDPGPHLIVCPASVLEN-WERELKKW 240 (520)
Q Consensus 163 ~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~-~l~~~~~~~~~~LIV~P~sll~~-W~~E~~~~ 240 (520)
...-+|-|||..+|.-+- ++ ..+++..-+.+|||++|--.|+ .|+ ...+++...|--.++| -.+||..-
T Consensus 125 ~YPF~LDpFQ~~aI~Cid----r~-eSVLVSAHTSAGKTVVAeYAIA~sLr----~kQRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 125 TYPFTLDPFQSTAIKCID----RG-ESVLVSAHTSAGKTVVAEYAIAMSLR----EKQRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred CCCcccCchHhhhhhhhc----CC-ceEEEEeecCCCcchHHHHHHHHHHH----hcCeEEeeChhhhhcchhHHHHHHH
Confidence 444589999999996553 33 4678888899999998854444 333 4568999999655554 67787765
Q ss_pred cCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-hH
Q 039292 241 CPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-SY 319 (520)
Q Consensus 241 ~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-s~ 319 (520)
+.+ |.+.+|...- .+....+|+|.+.|+++.+. ....++.+.| ||+||.|.++... .-
T Consensus 196 F~D--VGLMTGDVTI--------------nP~ASCLVMTTEILRsMLYR---GSEvmrEVaW--VIFDEIHYMRDkERGV 254 (1041)
T KOG0948|consen 196 FKD--VGLMTGDVTI--------------NPDASCLVMTTEILRSMLYR---GSEVMREVAW--VIFDEIHYMRDKERGV 254 (1041)
T ss_pred hcc--cceeecceee--------------CCCCceeeeHHHHHHHHHhc---cchHhheeee--EEeeeehhccccccce
Confidence 543 5555665432 24578999999999987754 3445555555 9999999998633 22
Q ss_pred HHHHHHHHhhhcCcEEEEeccC
Q 039292 320 RWKNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 320 ~~~~l~~l~~~~~~rl~LTgTP 341 (520)
.|....-+..+.-+-+.||||-
T Consensus 255 VWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 255 VWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred eeeeeEEeccccceEEEEeccC
Confidence 3332222333566677888884
No 106
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.12 E-value=5.6e-05 Score=75.61 Aligned_cols=73 Identities=19% Similarity=0.149 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCC---CCCEEEEeCCc-chhhHHHHHHHh
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNND---PGPHLIVCPAS-VLENWERELKKW 240 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~---~~~~LIV~P~s-ll~~W~~E~~~~ 240 (520)
..||.|+.-.+.+......+. .+|+-.++|+|||+..+..+......... ..++++++++. ++.+-..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~-~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGK-IGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCC-cEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 349999999988888887774 56899999999998887665332221222 23777777753 344444555543
No 107
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.12 E-value=5.6e-05 Score=75.61 Aligned_cols=73 Identities=19% Similarity=0.149 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCC---CCCEEEEeCCc-chhhHHHHHHHh
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNND---PGPHLIVCPAS-VLENWERELKKW 240 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~---~~~~LIV~P~s-ll~~W~~E~~~~ 240 (520)
..||.|+.-.+.+......+. .+|+-.++|+|||+..+..+......... ..++++++++. ++.+-..++++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~-~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGK-IGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCC-cEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 349999999988888887774 56899999999998887665332221222 23777777753 344444555543
No 108
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.10 E-value=3.6e-05 Score=85.37 Aligned_cols=127 Identities=21% Similarity=0.330 Sum_probs=89.0
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcC---
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCP--- 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--- 242 (520)
.+...|+.=.+.+. .|.+=.|+ .+||+|||.-.+.+..++. ..+++++||+|+. |+.|-.+.+.++..
T Consensus 82 ~~ws~QR~WakR~~----rg~SFaii-APTGvGKTTfg~~~sl~~a---~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~ 153 (1187)
T COG1110 82 RPWSAQRVWAKRLV----RGKSFAII-APTGVGKTTFGLLMSLYLA---KKGKRVYIIVPTTTLVRQVYERLKKFAEDAG 153 (1187)
T ss_pred CchHHHHHHHHHHH----cCCceEEE-cCCCCchhHHHHHHHHHHH---hcCCeEEEEecCHHHHHHHHHHHHHHHhhcC
Confidence 56778876444444 34222344 5699999987666555553 3458999999975 56888888988873
Q ss_pred --CCeEEEecCCCchhh-hHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcccc
Q 039292 243 --SFSVLQYHGAGRTAY-SRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHAL 313 (520)
Q Consensus 243 --~~~v~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~i 313 (520)
...++ ||+.-.... ...+..+.. ++++|+|||-+.+.+ +...+...+|++|++|.++.+
T Consensus 154 ~~~~~~~-yh~~l~~~ekee~le~i~~----gdfdIlitTs~FL~k-------~~e~L~~~kFdfifVDDVDA~ 215 (1187)
T COG1110 154 SLDVLVV-YHSALPTKEKEEALERIES----GDFDILITTSQFLSK-------RFEELSKLKFDFIFVDDVDAI 215 (1187)
T ss_pred Ccceeee-eccccchHHHHHHHHHHhc----CCccEEEEeHHHHHh-------hHHHhcccCCCEEEEccHHHH
Confidence 33344 888854443 333444333 368999999999887 778888899999999999875
No 109
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.08 E-value=7.4e-06 Score=84.91 Aligned_cols=159 Identities=19% Similarity=0.214 Sum_probs=96.9
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHH-HHHHHHHHHhCC---------CCCCEEEEeCCc-chhhHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQA-ITYLMLLKHLNN---------DPGPHLIVCPAS-VLENWE 234 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~a-ia~l~~l~~~~~---------~~~~~LIV~P~s-ll~~W~ 234 (520)
....|+|+.++.-+. .| ++.+.+..+|+|||.-- +-++.+++.... .....||++|+. |..|-.
T Consensus 95 ~~ptpvQk~sip~i~----~G-rdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~ 169 (482)
T KOG0335|consen 95 TKPTPVQKYSIPIIS----GG-RDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIY 169 (482)
T ss_pred cCCCcceeeccceee----cC-CceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHH
Confidence 467899999997665 45 57788999999999432 122233333211 123579999965 678888
Q ss_pred HHHHHhcCC--Ce-EEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcc
Q 039292 235 RELKKWCPS--FS-VLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAH 311 (520)
Q Consensus 235 ~E~~~~~p~--~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH 311 (520)
.|..++... ++ +.+|.|..-.. ..... ...++|+++|.+.+.... ....+..-...++|||||.
T Consensus 170 nea~k~~~~s~~~~~~~ygg~~~~~---q~~~~-----~~gcdIlvaTpGrL~d~~-----e~g~i~l~~~k~~vLDEAD 236 (482)
T KOG0335|consen 170 NEARKFSYLSGMKSVVVYGGTDLGA---QLRFI-----KRGCDILVATPGRLKDLI-----ERGKISLDNCKFLVLDEAD 236 (482)
T ss_pred HHHHhhcccccceeeeeeCCcchhh---hhhhh-----ccCccEEEecCchhhhhh-----hcceeehhhCcEEEecchH
Confidence 999988643 33 44555532211 11111 126899999999987643 2233333345699999999
Q ss_pred ccCC---cchHHHHHHHHHhh---hcCcEEEEeccCC
Q 039292 312 ALKD---KNSYRWKNLMSVAR---NANQRLMLTGTPL 342 (520)
Q Consensus 312 ~ikn---~~s~~~~~l~~l~~---~~~~rl~LTgTPi 342 (520)
++-. ....+.+.+..... ...+.+++|||=-
T Consensus 237 rMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp 273 (482)
T KOG0335|consen 237 RMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFP 273 (482)
T ss_pred HhhhhccccccHHHHhcccCCCCccceeEEEEeccCC
Confidence 9853 22233333332211 3456788888853
No 110
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.07 E-value=1.7e-05 Score=89.29 Aligned_cols=183 Identities=19% Similarity=0.115 Sum_probs=103.6
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh-CCCCCCEEEEeCCc-chhhHHHHHHHhcCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL-NNDPGPHLIVCPAS-VLENWERELKKWCPS 243 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~-~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~ 243 (520)
...+++|..++++.......+. -++|-.+||.|||..++..+...... .....+++.|.|.. ++.+-.+.+..++..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~-~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~ 272 (733)
T COG1203 194 HEGYELQEKALELILRLEKRSL-LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGL 272 (733)
T ss_pred chhhHHHHHHHHHHHhcccccc-cEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcc
Confidence 3458999999999987766652 36899999999999988887766554 23567788888855 456677788887755
Q ss_pred CeEEEe--cCCCchhhhHHHHH-------HhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccC
Q 039292 244 FSVLQY--HGAGRTAYSRELSS-------LAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 244 ~~v~~~--~g~~~~~~~~~~~~-------~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
..+... +|............ ........-+.+.+++................ +..+...++|+||+|.+-
T Consensus 273 ~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 273 FSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEF-LALLLTSLVILDEVHLYA 351 (733)
T ss_pred cccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHH-HHHHHhhchhhccHHhhc
Confidence 444433 55433221111100 00000000011222222222111111111122 555667899999999986
Q ss_pred Cc-chHH-HHHHHHHhhhcCcEEEEeccCCCCCHHHHH
Q 039292 315 DK-NSYR-WKNLMSVARNANQRLMLTGTPLQNDLHELW 350 (520)
Q Consensus 315 n~-~s~~-~~~l~~l~~~~~~rl~LTgTPi~n~~~el~ 350 (520)
.. .+.. ...+..+.......+++|||+-.---..|.
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~ 389 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLK 389 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHH
Confidence 54 2222 222333333467789999999654433333
No 111
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=98.05 E-value=4.7e-05 Score=85.10 Aligned_cols=143 Identities=16% Similarity=0.131 Sum_probs=86.3
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch----hhHHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL----ENWERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~~~~p 242 (520)
..++-|+.|--.|. .|-|.-..||.|||+.++..+.... . .+..++||+|+.-| .+|...+-+|+
T Consensus 82 ~~ydvQliGg~~Lh-------~G~Iaem~TGeGKTL~a~Lpa~~~a-l--~G~~V~VvTpn~yLA~qd~e~m~~l~~~l- 150 (896)
T PRK13104 82 RHFDVQLIGGMVLH-------EGNIAEMRTGEGKTLVATLPAYLNA-I--SGRGVHIVTVNDYLAKRDSQWMKPIYEFL- 150 (896)
T ss_pred CcchHHHhhhhhhc-------cCccccccCCCCchHHHHHHHHHHH-h--cCCCEEEEcCCHHHHHHHHHHHHHHhccc-
Confidence 34556888775554 3558889999999997654433221 1 23569999997654 33777777776
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccCCcchHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALKDKNSYR 320 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ikn~~s~~ 320 (520)
++.+.++.|.......... . ..+|++.|.+.|..+..... ..........+.++|+|||+++--
T Consensus 151 GLtv~~i~gg~~~~~r~~~-y--------~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLI----- 216 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEA-Y--------KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILI----- 216 (896)
T ss_pred CceEEEEeCCCCHHHHHHH-h--------CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhh-----
Confidence 4677666655332221111 1 35999999999722211100 011112234789999999998732
Q ss_pred HHHHHHHhhhcCcEEEEeccCC
Q 039292 321 WKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi 342 (520)
..++.-+++||.+-
T Consensus 217 --------DeArtPLIISg~~~ 230 (896)
T PRK13104 217 --------DEARTPLIISGAAE 230 (896)
T ss_pred --------hccCCceeeeCCCc
Confidence 23444577788553
No 112
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.02 E-value=4.2e-05 Score=87.75 Aligned_cols=82 Identities=15% Similarity=0.179 Sum_probs=55.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHH-HHH---Hhc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWER-ELK---KWC 241 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~-E~~---~~~ 241 (520)
..||+|...+..+......+ ..+++-..||+|||+..+.-+.... . ...+++|.||+.. ..||.. ++. +.+
T Consensus 245 ~~r~~Q~~~~~~i~~~~~~~-~~~~~eA~TG~GKT~ayLlp~~~~~--~-~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~ 320 (850)
T TIGR01407 245 EYRPEQLKLAELVLDQLTHS-EKSLIEAPTGTGKTLGYLLPALYYA--I-TEKPVVISTNTKVLQSQLLEKDIPLLNEIL 320 (850)
T ss_pred ccCHHHHHHHHHHHHHhccC-CcEEEECCCCCchhHHHHHHHHHHh--c-CCCeEEEEeCcHHHHHHHHHHHHHHHHHHc
Confidence 57999999888887777666 4557788999999987655543332 2 4568999999755 566644 443 443
Q ss_pred C-CCeEEEecCC
Q 039292 242 P-SFSVLQYHGA 252 (520)
Q Consensus 242 p-~~~v~~~~g~ 252 (520)
+ .+++.+..|.
T Consensus 321 ~~~~~~~~~kG~ 332 (850)
T TIGR01407 321 NFKINAALIKGK 332 (850)
T ss_pred CCCceEEEEEcc
Confidence 3 3666655554
No 113
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=97.98 E-value=6e-05 Score=74.81 Aligned_cols=175 Identities=20% Similarity=0.222 Sum_probs=103.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~ 244 (520)
.+.||-|+.+|+... .+ ..++|..++|-||++.- .| ..-...|-.|||||. +++..-.-.+....-+.
T Consensus 93 ekfrplq~~ain~~m----a~-ed~~lil~tgggkslcy-----ql-pal~adg~alvi~plislmedqil~lkqlgi~a 161 (695)
T KOG0353|consen 93 EKFRPLQLAAINATM----AG-EDAFLILPTGGGKSLCY-----QL-PALCADGFALVICPLISLMEDQILQLKQLGIDA 161 (695)
T ss_pred HhcChhHHHHhhhhh----cc-CceEEEEeCCCccchhh-----hh-hHHhcCCceEeechhHHHHHHHHHHHHHhCcch
Confidence 368999999998776 33 35789999999999631 11 111245678999995 66665555555554322
Q ss_pred eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc---hHHH
Q 039292 245 SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN---SYRW 321 (520)
Q Consensus 245 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~---s~~~ 321 (520)
. .++.+.......... ..-......+.++.+|++.+.+.........+.+....|.+|-+||+|....-. -.-+
T Consensus 162 s--~lnansske~~k~v~-~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy 238 (695)
T KOG0353|consen 162 S--MLNANSSKEEAKRVE-AAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDY 238 (695)
T ss_pred h--hccCcccHHHHHHHH-HHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcch
Confidence 2 222222221111111 111223346788999999887632221222334455568899999999763200 0112
Q ss_pred HHHHHH--hhhcCcEEEEeccCCCCCHHHHHHHHH
Q 039292 322 KNLMSV--ARNANQRLMLTGTPLQNDLHELWSLLE 354 (520)
Q Consensus 322 ~~l~~l--~~~~~~rl~LTgTPi~n~~~el~~ll~ 354 (520)
+++.-+ ..+....++||||...+-+.|.-.+|.
T Consensus 239 ~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ 273 (695)
T KOG0353|consen 239 KALGILKRQFKGAPIIGLTATATNHVLDDAKDILC 273 (695)
T ss_pred HHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHh
Confidence 333222 115667899999999998888766654
No 114
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.96 E-value=9.1e-05 Score=80.99 Aligned_cols=79 Identities=18% Similarity=0.172 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhc-----CCCe
Q 039292 172 QLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWC-----PSFS 245 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~-----p~~~ 245 (520)
|.+-..++......+ +.+++-..+|+|||+..+.-+..... .....++||++|+. +..|+.+++..+. ..++
T Consensus 2 Q~~~~~~i~~al~~~-~~lliEA~TGtGKTlAYLlpal~~~~-~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~ 79 (636)
T TIGR03117 2 QALFYLNCLTSLRQK-RIGMLEASTGVGKTLAMIMAALTMLK-ERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQ 79 (636)
T ss_pred HHHHHHHHHHHHhcC-CeEEEEcCCCCcHHHHHHHHHHHHHH-hccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCee
Confidence 677777777777665 45677789999999766544432211 22357899999964 5677887776554 2455
Q ss_pred EEEecCC
Q 039292 246 VLQYHGA 252 (520)
Q Consensus 246 v~~~~g~ 252 (520)
+.+..|.
T Consensus 80 ~~~lkGr 86 (636)
T TIGR03117 80 AGFFPGS 86 (636)
T ss_pred EEEEECC
Confidence 5554443
No 115
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=97.95 E-value=2.6e-05 Score=83.86 Aligned_cols=249 Identities=16% Similarity=0.169 Sum_probs=133.3
Q ss_pred CCCCccCCcHHHHHHHHHHHHHHhcC-----CCceEEeCCCCCCHHHHHHHHH--HHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 161 DSDFQPVLKPYQLVGVNFLLLLYRKG-----IAGAILADEMGLGKTIQAITYL--MLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 161 ~~~~~~~Lr~~Q~~gv~~l~~~~~~~-----~~g~ILademGlGKTi~aia~l--~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
|..-...|-.-|+++|.+.......- ..|.+++|.-|.||-.++..+| .+| .+..+.+.+-|...|-..-
T Consensus 258 P~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyL---kGRKrAlW~SVSsDLKfDA 334 (1300)
T KOG1513|consen 258 PSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYL---KGRKRALWFSVSSDLKFDA 334 (1300)
T ss_pred ccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhh---cccceeEEEEeccccccch
Confidence 33334678899999999987654431 2478999998888865544444 344 3344444444556666667
Q ss_pred HHHHHHhc-CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcc-ccchHHHHhhc-Cc------cE
Q 039292 234 ERELKKWC-PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQ-QKDDRKILKRW-RW------SC 304 (520)
Q Consensus 234 ~~E~~~~~-p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~-~~~~~~~l~~~-~~------~~ 304 (520)
.+.+.... +.+.|..++...-..... +....-+..|+++||..|.-.+.. ....+..|..+ +| .+
T Consensus 335 ERDL~DigA~~I~V~alnK~KYakIss------~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGv 408 (1300)
T KOG1513|consen 335 ERDLRDIGATGIAVHALNKFKYAKISS------KENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGV 408 (1300)
T ss_pred hhchhhcCCCCccceehhhcccccccc------cccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcccee
Confidence 77777654 344443332221111000 001112358999999998654431 11122222222 23 58
Q ss_pred EEEeCccccCC-------cchHHHHHHHHHhh--hcCcEEEEeccCCCCCHHHHHHHHHHhCCCC------CCChHHHHH
Q 039292 305 VLMDEAHALKD-------KNSYRWKNLMSVAR--NANQRLMLTGTPLQNDLHELWSLLEFMMPDL------FATEDVDLK 369 (520)
Q Consensus 305 vIiDEaH~ikn-------~~s~~~~~l~~l~~--~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~------~~~~~~~~~ 369 (520)
||+||||+.|| ..+++.+.+..+.. ...+.+..|||-... =-+|...++-++ |+....|+.
T Consensus 409 IvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsE----PrNMaYM~RLGlWGegtaf~eF~eFi~ 484 (1300)
T KOG1513|consen 409 IVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASE----PRNMAYMVRLGLWGEGTAFPEFEEFIH 484 (1300)
T ss_pred EEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCC----cchhhhhhhhccccCCCcCccHHHHHH
Confidence 99999999998 34455555555432 334566788887533 223333333343 444444443
Q ss_pred HhhcCCchHHHHH--HHHhhcchhhheeHhHHhhh--cCCcEEEEEEeCCCHHHHHHHHHHHHHH
Q 039292 370 KLLNGEDRDLIGR--MKSILGPFILRRLKSDVMQQ--LVPKIQWVEYVTMERPQEDAYRVAIEEY 430 (520)
Q Consensus 370 ~~~~~~~~~~~~~--L~~~l~~~~lRR~k~~v~~~--LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~ 430 (520)
...... -+.++. +.-.++...+ +.+ +-.-...+..|+||+.=+..|+....-.
T Consensus 485 AvEkRG-vGAMEIVAMDMK~rGmYi-------ARQLSFkgVsFrieEv~ls~eF~k~Yn~a~~LW 541 (1300)
T KOG1513|consen 485 AVEKRG-VGAMEIVAMDMKLRGMYI-------ARQLSFKGVSFRIEEVPLSKEFRKVYNRAAELW 541 (1300)
T ss_pred HHHhcC-Cceeeeeehhhhhhhhhh-------hhhccccCceEEEEecccCHHHHHHHHHHHHHH
Confidence 332211 111110 1101111111 123 3445667899999999999999866533
No 116
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=97.95 E-value=9.7e-05 Score=81.55 Aligned_cols=158 Identities=17% Similarity=0.152 Sum_probs=104.5
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC-CcchhhHHHHHHHhcCC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP-ASVLENWERELKKWCPS 243 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P-~sll~~W~~E~~~~~p~ 243 (520)
...|-+-|..++..+.... .++.-.+|..-||+|||-.-+.++..... .++.+||++| -++..|-...|...++
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~-~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~---~GkqvLvLVPEI~Ltpq~~~rf~~rFg- 270 (730)
T COG1198 196 WLALNQEQQAAVEAILSSL-GGFAPFLLDGVTGSGKTEVYLEAIAKVLA---QGKQVLVLVPEIALTPQLLARFKARFG- 270 (730)
T ss_pred ccccCHHHHHHHHHHHHhc-ccccceeEeCCCCCcHHHHHHHHHHHHHH---cCCEEEEEeccccchHHHHHHHHHHhC-
Confidence 3578899999999998765 44566799999999999777766665543 4578999999 5788887788887775
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcccc--CCcchHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHAL--KDKNSYRW 321 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~i--kn~~s~~~ 321 (520)
.++.++|+.-....+...+.... .+...|||=|...+- ..-.+..+||+||=|-- |..++.++
T Consensus 271 ~~v~vlHS~Ls~~er~~~W~~~~---~G~~~vVIGtRSAlF------------~Pf~~LGLIIvDEEHD~sYKq~~~prY 335 (730)
T COG1198 271 AKVAVLHSGLSPGERYRVWRRAR---RGEARVVIGTRSALF------------LPFKNLGLIIVDEEHDSSYKQEDGPRY 335 (730)
T ss_pred CChhhhcccCChHHHHHHHHHHh---cCCceEEEEechhhc------------CchhhccEEEEeccccccccCCcCCCc
Confidence 77777776643332222222111 235688888766542 23346789999999954 43332222
Q ss_pred H----HHHHHhhhcCcEEEEeccCC
Q 039292 322 K----NLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 322 ~----~l~~l~~~~~~rl~LTgTPi 342 (520)
. ++..-....-..++-||||-
T Consensus 336 hARdvA~~Ra~~~~~pvvLgSATPS 360 (730)
T COG1198 336 HARDVAVLRAKKENAPVVLGSATPS 360 (730)
T ss_pred CHHHHHHHHHHHhCCCEEEecCCCC
Confidence 2 22221113445788899995
No 117
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=97.92 E-value=4.5e-05 Score=79.74 Aligned_cols=170 Identities=20% Similarity=0.192 Sum_probs=105.5
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHH-HHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhcCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQA-ITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWCPS 243 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~a-ia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~ 243 (520)
..|.|-|.-+|..-+- .| ...++...|++|||+++ +|-+.. .-..+++.|.++|.-.+ .|-.++|..-+..
T Consensus 215 ~eLlPVQ~laVe~GLL---eG-~nllVVSaTasGKTLIgElAGi~~---~l~~g~KmlfLvPLVALANQKy~dF~~rYs~ 287 (830)
T COG1202 215 EELLPVQVLAVEAGLL---EG-ENLLVVSATASGKTLIGELAGIPR---LLSGGKKMLFLVPLVALANQKYEDFKERYSK 287 (830)
T ss_pred ceecchhhhhhhhccc---cC-CceEEEeccCCCcchHHHhhCcHH---HHhCCCeEEEEehhHHhhcchHHHHHHHhhc
Confidence 4789999999975442 23 23577888999999865 333333 33467899999997655 4466678755533
Q ss_pred --CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc-ch--
Q 039292 244 --FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK-NS-- 318 (520)
Q Consensus 244 --~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~-~s-- 318 (520)
+.+-+--|..+-+..... .......+.+|++-||+.+.-.... --.-.+...|||||.|.+... ..
T Consensus 288 LglkvairVG~srIk~~~~p---v~~~t~~dADIIVGTYEGiD~lLRt------g~~lgdiGtVVIDEiHtL~deERG~R 358 (830)
T COG1202 288 LGLKVAIRVGMSRIKTREEP---VVVDTSPDADIIVGTYEGIDYLLRT------GKDLGDIGTVVIDEIHTLEDEERGPR 358 (830)
T ss_pred ccceEEEEechhhhcccCCc---cccCCCCCCcEEEeechhHHHHHHc------CCcccccceEEeeeeeeccchhcccc
Confidence 444444455443322111 1122345789999999987542211 012235789999999999752 11
Q ss_pred --HHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHH
Q 039292 319 --YRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLE 354 (520)
Q Consensus 319 --~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~ 354 (520)
-....++.++ ...+.|.||||- .|+.||...|.
T Consensus 359 LdGLI~RLr~l~-~~AQ~i~LSATV--gNp~elA~~l~ 393 (830)
T COG1202 359 LDGLIGRLRYLF-PGAQFIYLSATV--GNPEELAKKLG 393 (830)
T ss_pred hhhHHHHHHHhC-CCCeEEEEEeec--CChHHHHHHhC
Confidence 1223344443 456789999996 56777766655
No 118
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.91 E-value=5.3e-05 Score=74.94 Aligned_cols=158 Identities=18% Similarity=0.117 Sum_probs=97.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHH-HHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhc--C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQ-AITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWC--P 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~-aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~--p 242 (520)
+-.|.|...|..++ .| +.||-+..+|+|||.. |+-.+..+.. ...+-=.||++|+.-+ .|-.+.|.... -
T Consensus 29 ~pTpiQ~~cIpkIL----eG-rdcig~AkTGsGKT~AFaLPil~rLse-dP~giFalvlTPTrELA~QiaEQF~alGk~l 102 (442)
T KOG0340|consen 29 KPTPIQQACIPKIL----EG-RDCIGCAKTGSGKTAAFALPILNRLSE-DPYGIFALVLTPTRELALQIAEQFIALGKLL 102 (442)
T ss_pred CCCchHhhhhHHHh----cc-cccccccccCCCcchhhhHHHHHhhcc-CCCcceEEEecchHHHHHHHHHHHHHhcccc
Confidence 45689999998888 45 5799999999999963 2333333322 2233346999997654 55555565443 2
Q ss_pred CCeEEEecCCCc-hhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHH
Q 039292 243 SFSVLQYHGAGR-TAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRW 321 (520)
Q Consensus 243 ~~~v~~~~g~~~-~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~ 321 (520)
++++.++.|... -.... ......+||++|.+.+..+.....+... +...+..++|+|||.++.+.. ..
T Consensus 103 ~lK~~vivGG~d~i~qa~--------~L~~rPHvVvatPGRlad~l~sn~~~~~-~~~~rlkflVlDEADrvL~~~--f~ 171 (442)
T KOG0340|consen 103 NLKVSVIVGGTDMIMQAA--------ILSDRPHVVVATPGRLADHLSSNLGVCS-WIFQRLKFLVLDEADRVLAGC--FP 171 (442)
T ss_pred cceEEEEEccHHHhhhhh--------hcccCCCeEecCccccccccccCCccch-hhhhceeeEEecchhhhhccc--hh
Confidence 455655555432 11111 1233569999999999877654432222 233357789999999996532 22
Q ss_pred HHHHHH---hhhcCcEEEEeccC
Q 039292 322 KNLMSV---ARNANQRLMLTGTP 341 (520)
Q Consensus 322 ~~l~~l---~~~~~~rl~LTgTP 341 (520)
..+..+ ....+..+++|||-
T Consensus 172 d~L~~i~e~lP~~RQtLlfSATi 194 (442)
T KOG0340|consen 172 DILEGIEECLPKPRQTLLFSATI 194 (442)
T ss_pred hHHhhhhccCCCccceEEEEeeh
Confidence 333322 12345789999995
No 119
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=2.3e-05 Score=75.06 Aligned_cols=170 Identities=19% Similarity=0.202 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHH-HHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhcCCCeEE
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQ-AITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWCPSFSVL 247 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~-aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~~~v~ 247 (520)
..|..|+..++ +| +.+|.....|+|||.+ +|+++..+. .......+||+.|+.-+ .|-.+-+.......++.
T Consensus 52 ~IQqrAi~~Il----kG-rdViaQaqSGTGKTa~~si~vlq~~d-~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 52 AIQQRAIPQIL----KG-RDVIAQAQSGTGKTATFSISVLQSLD-ISVRETQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred HHHhhhhhhhh----cc-cceEEEecCCCCceEEEEeeeeeecc-cccceeeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 57888888777 55 5689999999999965 455554332 23334568999997655 44555555555544444
Q ss_pred EecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC--cchHHHHHHH
Q 039292 248 QYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD--KNSYRWKNLM 325 (520)
Q Consensus 248 ~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn--~~s~~~~~l~ 325 (520)
++...+.......+..+. -+.+|+.-|++.+..+. ....|......++|+|||..+.| ...+.+...+
T Consensus 126 ~hacigg~n~gedikkld-----~G~hvVsGtPGrv~dmi-----kr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr 195 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKLD-----YGQHVVSGTPGRVLDMI-----KRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYR 195 (400)
T ss_pred EEEEecCCccchhhhhhc-----ccceEeeCCCchHHHHH-----HhccccccceeEEEeccHHHHHHhhHHHHHHHHHH
Confidence 332221111122222222 14688888998887654 34556677789999999998865 4556777777
Q ss_pred HHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCC
Q 039292 326 SVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDL 360 (520)
Q Consensus 326 ~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~ 360 (520)
.+. +....+++|||- +.|+..+.++..++.
T Consensus 196 ~lp-~~~Qvv~~SATl----p~eilemt~kfmtdp 225 (400)
T KOG0328|consen 196 YLP-PGAQVVLVSATL----PHEILEMTEKFMTDP 225 (400)
T ss_pred hCC-CCceEEEEeccC----cHHHHHHHHHhcCCc
Confidence 663 577899999997 467777888877765
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=97.89 E-value=0.00013 Score=81.40 Aligned_cols=139 Identities=18% Similarity=0.147 Sum_probs=88.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh----HHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN----WERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~----W~~E~~~~~p 242 (520)
..++-|+.|---|. .|.|.-..||.|||++|...+. +. ...+..+-||+|+..|.. |...+-.|+
T Consensus 82 ~~ydVQliGg~~Lh-------~G~iaEM~TGEGKTLvA~l~a~-l~--al~G~~VhvvT~ndyLA~RD~e~m~~l~~~l- 150 (913)
T PRK13103 82 RHFDVQLIGGMTLH-------EGKIAEMRTGEGKTLVGTLAVY-LN--ALSGKGVHVVTVNDYLARRDANWMRPLYEFL- 150 (913)
T ss_pred CcchhHHHhhhHhc-------cCccccccCCCCChHHHHHHHH-HH--HHcCCCEEEEeCCHHHHHHHHHHHHHHhccc-
Confidence 45567888865553 3568889999999997643332 21 235678899999877643 766666665
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhH-----hhhhccccchHHHHhhcCccEEEEeCccccCCcc
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLF-----ERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN 317 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l-----~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~ 317 (520)
++.+.++.+......++..- ..+|++.|...| +..... .........+.++||||+|.+.-.
T Consensus 151 Gl~v~~i~~~~~~~err~~Y---------~~dI~YGT~~e~gFDYLrD~~~~---~~~~~vqr~l~~aIVDEvDsiLID- 217 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAY---------AADITYGTNNEFGFDYLRDNMAF---SLDDKFQRELNFAVIDEVDSILID- 217 (913)
T ss_pred CCEEEEECCCCCHHHHHHHh---------cCCEEEEcccccccchhhcccee---chhhhcccccceeEechhhheecc-
Confidence 67888777664433222211 258999988876 332221 112223457899999999988422
Q ss_pred hHHHHHHHHHhhhcCcEEEEeccC
Q 039292 318 SYRWKNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 318 s~~~~~l~~l~~~~~~rl~LTgTP 341 (520)
.++.-+++||.+
T Consensus 218 ------------EArtPLIISg~~ 229 (913)
T PRK13103 218 ------------EARTPLIISGQA 229 (913)
T ss_pred ------------ccCCceeecCCC
Confidence 344457788754
No 121
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=97.88 E-value=7.3e-05 Score=86.97 Aligned_cols=132 Identities=17% Similarity=0.077 Sum_probs=72.2
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-----cchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-----SVLENWERELKKWCPSFSVLQYHGAGRTAYSRELS 262 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-----sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~ 262 (520)
.-+|++.+||+|||.|.=.++..+ ..+..+.+++.-|. ++..+...|+..-......+.......
T Consensus 90 ~VviI~GeTGSGKTTqlPq~lle~--g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~-------- 159 (1294)
T PRK11131 90 QVVIVAGETGSGKTTQLPKICLEL--GRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQ-------- 159 (1294)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc--CCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCccc--------
Confidence 357899999999999755444322 11222333334464 333445555554222211111000000
Q ss_pred HHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcc-ccCCcchHHHHHHHHHhh--hcCcEEEEec
Q 039292 263 SLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAH-ALKDKNSYRWKNLMSVAR--NANQRLMLTG 339 (520)
Q Consensus 263 ~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH-~ikn~~s~~~~~l~~l~~--~~~~rl~LTg 339 (520)
......|+++|.+.+....... . .-..+++||||||| +.-|.+-.. ..++.+.. ...+.+++||
T Consensus 160 ------~s~~t~I~v~TpG~LL~~l~~d-----~-~Ls~~~~IIIDEAHERsLn~DfLL-g~Lk~lL~~rpdlKvILmSA 226 (1294)
T PRK11131 160 ------VSDNTMVKLMTDGILLAEIQQD-----R-LLMQYDTIIIDEAHERSLNIDFIL-GYLKELLPRRPDLKVIITSA 226 (1294)
T ss_pred ------cCCCCCEEEEChHHHHHHHhcC-----C-ccccCcEEEecCccccccccchHH-HHHHHhhhcCCCceEEEeeC
Confidence 0124689999999998754311 1 13468999999999 565544322 22333322 2346799999
Q ss_pred cCC
Q 039292 340 TPL 342 (520)
Q Consensus 340 TPi 342 (520)
|.-
T Consensus 227 Tid 229 (1294)
T PRK11131 227 TID 229 (1294)
T ss_pred CCC
Confidence 984
No 122
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=97.84 E-value=0.00015 Score=80.87 Aligned_cols=128 Identities=19% Similarity=0.134 Sum_probs=78.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh----HHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN----WERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~----W~~E~~~~~p 242 (520)
..++-|+.|.-.|. .|.|.-..||.|||+++...+. +... .+..+-||+|+..|.. |...+-+++
T Consensus 81 ~~~dvQlig~l~L~-------~G~Iaem~TGeGKTLva~lpa~-l~aL--~G~~V~IvTpn~yLA~rd~e~~~~l~~~L- 149 (830)
T PRK12904 81 RHFDVQLIGGMVLH-------EGKIAEMKTGEGKTLVATLPAY-LNAL--TGKGVHVVTVNDYLAKRDAEWMGPLYEFL- 149 (830)
T ss_pred CCCccHHHhhHHhc-------CCchhhhhcCCCcHHHHHHHHH-HHHH--cCCCEEEEecCHHHHHHHHHHHHHHHhhc-
Confidence 45667888875453 3568999999999997654332 2222 2345779999876533 666666665
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccC
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
++.+.+..|........... ..+|++.|...|..+..... .....+....+.++|+|||.++.
T Consensus 150 Glsv~~i~~~~~~~er~~~y---------~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAY---------AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhc---------CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 67777776654333222111 25899999988833221111 01222344578999999999873
No 123
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.79 E-value=7.1e-05 Score=84.87 Aligned_cols=179 Identities=20% Similarity=0.182 Sum_probs=112.5
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~ 244 (520)
...||-|.++|+..+ .| ..|++-..+|.||.+.- -.-.--.++-+|||.|. +|+.--...+.. .++
T Consensus 263 ~~FR~~Q~eaI~~~l----~G-kd~fvlmpTG~GKSLCY------QlPA~l~~gitvVISPL~SLm~DQv~~L~~--~~I 329 (941)
T KOG0351|consen 263 KGFRPNQLEAINATL----SG-KDCFVLMPTGGGKSLCY------QLPALLLGGVTVVISPLISLMQDQVTHLSK--KGI 329 (941)
T ss_pred ccCChhHHHHHHHHH----cC-CceEEEeecCCceeeEe------eccccccCCceEEeccHHHHHHHHHHhhhh--cCc
Confidence 468999999998555 44 56899999999999521 11112234578999994 666555445522 245
Q ss_pred eEEEecCCCchhhhHH-HHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhc----CccEEEEeCccccCCcc--
Q 039292 245 SVLQYHGAGRTAYSRE-LSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRW----RWSCVLMDEAHALKDKN-- 317 (520)
Q Consensus 245 ~v~~~~g~~~~~~~~~-~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~----~~~~vIiDEaH~ikn~~-- 317 (520)
....+++......... +..+.. ..+.+.++-+|++.+..... -...+... ...++|+||||.+..-.
T Consensus 330 ~a~~L~s~q~~~~~~~i~q~l~~--~~~~ikilYvtPE~v~~~~~----l~~~~~~L~~~~~lal~vIDEAHCVSqWgHd 403 (941)
T KOG0351|consen 330 PACFLSSIQTAAERLAILQKLAN--GNPIIKILYVTPEKVVASEG----LLESLADLYARGLLALFVIDEAHCVSQWGHD 403 (941)
T ss_pred ceeeccccccHHHHHHHHHHHhC--CCCeEEEEEeCHHHhhcccc----hhhHHHhccCCCeeEEEEecHHHHhhhhccc
Confidence 5566666655443322 222222 12457899999999876322 11122222 26899999999885311
Q ss_pred -hHHHHHHHHH--hhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCC
Q 039292 318 -SYRWKNLMSV--ARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFAT 363 (520)
Q Consensus 318 -s~~~~~l~~l--~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~ 363 (520)
-.-|+.+..+ .......|+||||--..--.|+...|+.-+|.+|..
T Consensus 404 FRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~ 452 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS 452 (941)
T ss_pred ccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc
Confidence 1122333322 223456899999999999999999999988877654
No 124
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=97.78 E-value=3.1e-05 Score=86.22 Aligned_cols=162 Identities=18% Similarity=0.200 Sum_probs=95.4
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHH-HHHHHHhC---CCCCC-EEEEeCCc-chhh---HHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITY-LMLLKHLN---NDPGP-HLIVCPAS-VLEN---WERE 236 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~-l~~l~~~~---~~~~~-~LIV~P~s-ll~~---W~~E 236 (520)
...+|.|..|+-.+. .| +.||.-..+|+|||+--+-- +......+ ...|| .||+||+. +..| |.+-
T Consensus 386 ~k~~~IQ~qAiP~Im----sG-rdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~k 460 (997)
T KOG0334|consen 386 EKPTPIQAQAIPAIM----SG-RDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRK 460 (997)
T ss_pred CCCcchhhhhcchhc----cC-cceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 367888988887776 45 57899999999999744221 22211111 12355 48899964 3344 6666
Q ss_pred HHHhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccC--
Q 039292 237 LKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALK-- 314 (520)
Q Consensus 237 ~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik-- 314 (520)
|.+.....-+.+|+|.....-...+. + ...|+|+|.+.+............ .-.+..++|+|||.++.
T Consensus 461 f~k~l~ir~v~vygg~~~~~qiaelk---R-----g~eIvV~tpGRmiD~l~~n~grvt--nlrR~t~lv~deaDrmfdm 530 (997)
T KOG0334|consen 461 FLKLLGIRVVCVYGGSGISQQIAELK---R-----GAEIVVCTPGRMIDILCANSGRVT--NLRRVTYLVLDEADRMFDM 530 (997)
T ss_pred HHhhcCceEEEecCCccHHHHHHHHh---c-----CCceEEeccchhhhhHhhcCCccc--cccccceeeechhhhhhee
Confidence 66664444455666665444333332 2 358999999887654332221111 12235689999999984
Q ss_pred CcchHHHHHHHHHhhhcCcEEEEeccCCC
Q 039292 315 DKNSYRWKNLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 315 n~~s~~~~~l~~l~~~~~~rl~LTgTPi~ 343 (520)
...-+.++.+..+. .-+..++.|+|-..
T Consensus 531 gfePq~~~Ii~nlr-pdrQtvlfSatfpr 558 (997)
T KOG0334|consen 531 GFEPQITRILQNLR-PDRQTVLFSATFPR 558 (997)
T ss_pred ccCcccchHHhhcc-hhhhhhhhhhhhhH
Confidence 23334455555552 44556777777543
No 125
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=97.77 E-value=0.00033 Score=76.54 Aligned_cols=159 Identities=18% Similarity=0.124 Sum_probs=94.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh----HHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN----WERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~----W~~E~~~~~p 242 (520)
..++-|+.|...|+ .|-|.-..||.|||++|...+... ...+..+-||+|+..|.. |...+-.|+
T Consensus 78 r~ydvQlig~l~Ll-------~G~VaEM~TGEGKTLvA~l~a~l~---AL~G~~VhvvT~NdyLA~RDae~m~~ly~~L- 146 (764)
T PRK12326 78 RPFDVQLLGALRLL-------AGDVIEMATGEGKTLAGAIAAAGY---ALQGRRVHVITVNDYLARRDAEWMGPLYEAL- 146 (764)
T ss_pred CcchHHHHHHHHHh-------CCCcccccCCCCHHHHHHHHHHHH---HHcCCCeEEEcCCHHHHHHHHHHHHHHHHhc-
Confidence 55678998887776 355888899999999886555433 235678899999877643 877777776
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccCCcchHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALKDKNSYR 320 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ikn~~s~~ 320 (520)
++.+.+..+.......+..- ..+|+-+|-..|..+..... ..........+.++|+||+..+.
T Consensus 147 GLsvg~i~~~~~~~err~aY---------~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL------ 211 (764)
T PRK12326 147 GLTVGWITEESTPEERRAAY---------ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL------ 211 (764)
T ss_pred CCEEEEECCCCCHHHHHHHH---------cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe------
Confidence 67777776654433222111 24666666554432111100 01223344568999999998763
Q ss_pred HHHHHHHhhhcCcEEEEeccCCC-CCHHHHHHHHHHhCC
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQ-NDLHELWSLLEFMMP 358 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~-n~~~el~~ll~fl~p 358 (520)
...++.-+++||.+-. +.....+.++.-|.+
T Consensus 212 -------IDeArtPLiISg~~~~~~~y~~~~~~v~~L~~ 243 (764)
T PRK12326 212 -------VDEALVPLVLAGSTPGEAPRGEIAELVRRLRE 243 (764)
T ss_pred -------eccccCceeeeCCCcchhHHHHHHHHHHhcCc
Confidence 2234555777775532 233333444444433
No 126
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.73 E-value=0.00021 Score=69.99 Aligned_cols=161 Identities=18% Similarity=0.155 Sum_probs=90.2
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchh----hHHHHHHHhc
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLE----NWERELKKWC 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~----~W~~E~~~~~ 241 (520)
..+++-|+.|+-.|. .|-|.-..||=|||+++...+ ++.. -.+.++=||+.+.-+. +|...|-+++
T Consensus 76 ~~p~~vQll~~l~L~-------~G~laEm~TGEGKTli~~l~a-~~~A--L~G~~V~vvT~NdyLA~RD~~~~~~~y~~L 145 (266)
T PF07517_consen 76 LRPYDVQLLGALALH-------KGRLAEMKTGEGKTLIAALPA-ALNA--LQGKGVHVVTSNDYLAKRDAEEMRPFYEFL 145 (266)
T ss_dssp ----HHHHHHHHHHH-------TTSEEEESTTSHHHHHHHHHH-HHHH--TTSS-EEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CcccHHHHhhhhhcc-------cceeEEecCCCCcHHHHHHHH-HHHH--HhcCCcEEEeccHHHhhccHHHHHHHHHHh
Confidence 356778888875552 345999999999999875433 3433 2456788888877663 3888888887
Q ss_pred CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccCC----
Q 039292 242 PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALKD---- 315 (520)
Q Consensus 242 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ikn---- 315 (520)
++.+....+......++..- ..+|+-+|-..|..+..... ..........++++||||+..+.-
T Consensus 146 -Glsv~~~~~~~~~~~r~~~Y---------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiDea~ 215 (266)
T PF07517_consen 146 -GLSVGIITSDMSSEERREAY---------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILIDEAR 215 (266)
T ss_dssp -T--EEEEETTTEHHHHHHHH---------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTTGCC
T ss_pred -hhccccCccccCHHHHHHHH---------hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEecCc
Confidence 56666555544322111111 14788777766654211100 011111235789999999987521
Q ss_pred --------------------cchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHH
Q 039292 316 --------------------KNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELW 350 (520)
Q Consensus 316 --------------------~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~ 350 (520)
..+..++.+.. .-....+|||| ....-.|||
T Consensus 216 ~pl~is~~Ke~~~i~~~~~t~a~is~q~~f~---~Y~~l~GmTGT-a~~~~~e~~ 266 (266)
T PF07517_consen 216 TPLIISGAKEGLKITPESLTLASISYQNFFR---LYPKLSGMTGT-AKTEAKEFW 266 (266)
T ss_dssp SEEEEEEHHTTS----SEEEEEEEEHHHHHT---TSSEEEEEESS-TGGGHHHHH
T ss_pred ccccccccccCCccCCCCeEEEEeehHHHHH---hcchheeeCCC-ChhhHhhcC
Confidence 01112222222 23447789999 777777776
No 127
>KOG4284 consensus DEAD box protein [Transcription]
Probab=97.73 E-value=6.2e-05 Score=79.57 Aligned_cols=161 Identities=16% Similarity=0.152 Sum_probs=103.4
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhcC---C
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWCP---S 243 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p---~ 243 (520)
-.+.|..||-..+ .+. ..|+....|+|||++-..++...+.......-.+||+|+.-+ -|-..-|.+.+| +
T Consensus 48 ptkiQaaAIP~~~----~km-DliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 48 PTKIQAAAIPAIF----SKM-DLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred CCchhhhhhhhhh----ccc-ceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 3468888886655 232 469999999999976333222222334445567999997654 556666777776 4
Q ss_pred CeEEEecCCCc-hhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHH--
Q 039292 244 FSVLQYHGAGR-TAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYR-- 320 (520)
Q Consensus 244 ~~v~~~~g~~~-~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~-- 320 (520)
++..+|.|... .....++. ...|+|-|++.+.... ....|.-....++|+|||..+-...|..
T Consensus 123 ~~csvfIGGT~~~~d~~rlk---------~~rIvIGtPGRi~qL~-----el~~~n~s~vrlfVLDEADkL~~t~sfq~~ 188 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLIRLK---------QTRIVIGTPGRIAQLV-----ELGAMNMSHVRLFVLDEADKLMDTESFQDD 188 (980)
T ss_pred cceEEEecCchhhhhhhhhh---------hceEEecCchHHHHHH-----HhcCCCccceeEEEeccHHhhhchhhHHHH
Confidence 66777766543 33333333 3589999999987644 3444555578899999999997655533
Q ss_pred -HHHHHHHhhhcCcEEEEeccCCCCCHHHH
Q 039292 321 -WKNLMSVARNANQRLMLTGTPLQNDLHEL 349 (520)
Q Consensus 321 -~~~l~~l~~~~~~rl~LTgTPi~n~~~el 349 (520)
...+..+ .+.+..+++|||=-+| |.++
T Consensus 189 In~ii~sl-P~~rQv~a~SATYp~n-Ldn~ 216 (980)
T KOG4284|consen 189 INIIINSL-PQIRQVAAFSATYPRN-LDNL 216 (980)
T ss_pred HHHHHHhc-chhheeeEEeccCchh-HHHH
Confidence 3333333 2567789999996544 4443
No 128
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.73 E-value=0.00041 Score=78.09 Aligned_cols=72 Identities=25% Similarity=0.257 Sum_probs=53.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKK 239 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~ 239 (520)
.+||.|++....+......+ +.+++-.+||+|||+.++..+.......+...++++.+.+ +.+.|-.+|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~-~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRG-DEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccC-CceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 57999999999999888877 4569999999999998776654432222333456666664 558889999988
No 129
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.70 E-value=0.00023 Score=75.59 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=62.7
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~ 244 (520)
++|-.-|..||+..+.. . =-|+..++|+|||++..+++..+.. ...+|+||++|.++ ++|-+..|.+-. +
T Consensus 409 pkLN~SQ~~AV~~VL~r---p--lsLIQGPPGTGKTvtsa~IVyhl~~--~~~~~VLvcApSNiAVDqLaeKIh~tg--L 479 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQR---P--LSLIQGPPGTGKTVTSATIVYHLAR--QHAGPVLVCAPSNIAVDQLAEKIHKTG--L 479 (935)
T ss_pred hhhchHHHHHHHHHHcC---C--ceeeecCCCCCceehhHHHHHHHHH--hcCCceEEEcccchhHHHHHHHHHhcC--c
Confidence 47889999999988832 2 2489999999999999888887754 37899999999765 788888887753 7
Q ss_pred eEEEecCCCc
Q 039292 245 SVLQYHGAGR 254 (520)
Q Consensus 245 ~v~~~~g~~~ 254 (520)
+|+.+....+
T Consensus 480 KVvRl~aksR 489 (935)
T KOG1802|consen 480 KVVRLCAKSR 489 (935)
T ss_pred eEeeeehhhh
Confidence 7776655443
No 130
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.69 E-value=0.00032 Score=66.01 Aligned_cols=150 Identities=18% Similarity=0.179 Sum_probs=67.2
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHH-----HHHhcC
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERE-----LKKWCP 242 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E-----~~~~~p 242 (520)
+-+.|...+..|. .. .-+++....|+|||+.|++....+.. .+...+++|+-|..-...+.-- -++..|
T Consensus 5 ~~~~Q~~~~~al~---~~--~~v~~~G~AGTGKT~LA~a~Al~~v~-~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p 78 (205)
T PF02562_consen 5 KNEEQKFALDALL---NN--DLVIVNGPAGTGKTFLALAAALELVK-EGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEP 78 (205)
T ss_dssp -SHHHHHHHHHHH---H---SEEEEE--TTSSTTHHHHHHHHHHHH-TTS-SEEEEEE-S--TT----SS---------T
T ss_pred CCHHHHHHHHHHH---hC--CeEEEECCCCCcHHHHHHHHHHHHHH-hCCCcEEEEEecCCCCccccccCCCCHHHHHHH
Confidence 4579999999888 22 23688889999999999998876654 4667788888776533222110 011111
Q ss_pred CCeEEE--ecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHH
Q 039292 243 SFSVLQ--YHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYR 320 (520)
Q Consensus 243 ~~~v~~--~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~ 320 (520)
-+..+. +..--... .+..+.. ...|-+.+...++- ..+...+||+|||+++.. ...
T Consensus 79 ~~~p~~d~l~~~~~~~---~~~~~~~-----~~~Ie~~~~~~iRG------------rt~~~~~iIvDEaQN~t~--~~~ 136 (205)
T PF02562_consen 79 YLRPIYDALEELFGKE---KLEELIQ-----NGKIEIEPLAFIRG------------RTFDNAFIIVDEAQNLTP--EEL 136 (205)
T ss_dssp TTHHHHHHHTTTS-TT---CHHHHHH-----TTSEEEEEGGGGTT--------------B-SEEEEE-SGGG--H--HHH
T ss_pred HHHHHHHHHHHHhChH---hHHHHhh-----cCeEEEEehhhhcC------------ccccceEEEEecccCCCH--HHH
Confidence 100000 00000000 0111111 12455555554432 234468999999998842 222
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCCCHH
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQNDLH 347 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n~~~ 347 (520)
...+.++ ....+++++|-|.|.+..
T Consensus 137 k~ilTR~--g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 137 KMILTRI--GEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp HHHHTTB---TT-EEEEEE--------
T ss_pred HHHHccc--CCCcEEEEecCceeecCC
Confidence 2333333 456799999999877643
No 131
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.69 E-value=0.00027 Score=74.70 Aligned_cols=68 Identities=22% Similarity=0.248 Sum_probs=52.1
Q ss_pred CCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHH
Q 039292 162 SDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERE 236 (520)
Q Consensus 162 ~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E 236 (520)
..+...|-+-|..++.+..... . -.++-.++|+|||.+.+.++..+.. .+..+||.+|+++ +.|-...
T Consensus 180 ~~~~~~ln~SQk~Av~~~~~~k--~--l~~I~GPPGTGKT~TlvEiI~qlvk---~~k~VLVcaPSn~AVdNiver 248 (649)
T KOG1803|consen 180 TFFNKNLNSSQKAAVSFAINNK--D--LLIIHGPPGTGKTRTLVEIISQLVK---QKKRVLVCAPSNVAVDNIVER 248 (649)
T ss_pred ccCCccccHHHHHHHHHHhccC--C--ceEeeCCCCCCceeeHHHHHHHHHH---cCCeEEEEcCchHHHHHHHHH
Confidence 4456789999999999887432 2 3577889999999999998877744 4588999999765 6776554
No 132
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=97.65 E-value=0.00043 Score=77.44 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=91.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch----hhHHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL----ENWERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~~~~p 242 (520)
.-++-|+.|--.|. .|-|.-..||.|||++++..+. +.. ..+.++.||+|+.-| ..|...+-.|+
T Consensus 82 ~~ydVQliGgl~L~-------~G~IaEm~TGEGKTL~a~lp~~-l~a--l~g~~VhIvT~ndyLA~RD~e~m~~l~~~l- 150 (908)
T PRK13107 82 RHFDVQLLGGMVLD-------SNRIAEMRTGEGKTLTATLPAY-LNA--LTGKGVHVITVNDYLARRDAENNRPLFEFL- 150 (908)
T ss_pred CcCchHHhcchHhc-------CCccccccCCCCchHHHHHHHH-HHH--hcCCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 44667888765553 3568889999999997654332 222 244569999997655 34999999986
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccCCcchHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALKDKNSYR 320 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ikn~~s~~ 320 (520)
++.+.+..+...... ... . -..+|+..|...|..+..... ..........+.++|+||+..+...
T Consensus 151 Glsv~~i~~~~~~~~--r~~----~---Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD---- 217 (908)
T PRK13107 151 GLTVGINVAGLGQQE--KKA----A---YNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID---- 217 (908)
T ss_pred CCeEEEecCCCCHHH--HHh----c---CCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc----
Confidence 677766655432211 111 0 035899999887732221111 0112233457899999999977432
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHH
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQNDLHELWSLLE 354 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~ 354 (520)
.++.-+++||.+ ... .++|..+.
T Consensus 218 ---------EArtPLIISg~~-~~~-~~~y~~~~ 240 (908)
T PRK13107 218 ---------EARTPLIISGAA-EDS-SELYIKIN 240 (908)
T ss_pred ---------cCCCceeecCCC-ccc-hHHHHHHH
Confidence 344557788854 333 34444433
No 133
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.63 E-value=0.00084 Score=63.17 Aligned_cols=132 Identities=20% Similarity=0.196 Sum_probs=69.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeE
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSV 246 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v 246 (520)
+|.+-|..++..++. .+.+-++|....|+|||.....+...+.. .+.++++++|+.-...= +..-.
T Consensus 1 ~L~~~Q~~a~~~~l~---~~~~~~~l~G~aGtGKT~~l~~~~~~~~~---~g~~v~~~apT~~Aa~~---L~~~~----- 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILT---SGDRVSVLQGPAGTGKTTLLKALAEALEA---AGKRVIGLAPTNKAAKE---LREKT----- 66 (196)
T ss_dssp -S-HHHHHHHHHHHH---CTCSEEEEEESTTSTHHHHHHHHHHHHHH---TT--EEEEESSHHHHHH---HHHHH-----
T ss_pred CCCHHHHHHHHHHHh---cCCeEEEEEECCCCCHHHHHHHHHHHHHh---CCCeEEEECCcHHHHHH---HHHhh-----
Confidence 477899999998874 23234678889999999876665555543 34789999998654332 22211
Q ss_pred EEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHH
Q 039292 247 LQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMS 326 (520)
Q Consensus 247 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~ 326 (520)
.+-..|...+........ ..........++||||||-.+. +.....+..
T Consensus 67 ---------------------------~~~a~Ti~~~l~~~~~~~-~~~~~~~~~~~vliVDEasmv~---~~~~~~ll~ 115 (196)
T PF13604_consen 67 ---------------------------GIEAQTIHSFLYRIPNGD-DEGRPELPKKDVLIVDEASMVD---SRQLARLLR 115 (196)
T ss_dssp ---------------------------TS-EEEHHHHTTEECCEE-CCSSCC-TSTSEEEESSGGG-B---HHHHHHHHH
T ss_pred ---------------------------CcchhhHHHHHhcCCccc-ccccccCCcccEEEEecccccC---HHHHHHHHH
Confidence 001111111111000000 0000002346799999999983 334444444
Q ss_pred HhhhcCcEEEEeccCCC
Q 039292 327 VARNANQRLMLTGTPLQ 343 (520)
Q Consensus 327 l~~~~~~rl~LTgTPi~ 343 (520)
.+....-+++|.|-|-|
T Consensus 116 ~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 116 LAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp HS-T-T-EEEEEE-TTS
T ss_pred HHHhcCCEEEEECCcch
Confidence 44355679999999875
No 134
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=97.62 E-value=0.00021 Score=83.47 Aligned_cols=132 Identities=17% Similarity=0.101 Sum_probs=70.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhcC-C-CeEEEec--CCCchhhhHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWCP-S-FSVLQYH--GAGRTAYSRELS 262 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p-~-~~v~~~~--g~~~~~~~~~~~ 262 (520)
.-+||+.+||+|||.|.=.++... ..+..+.+++.-|..+. .....-+..-.. . ...+-|. .....
T Consensus 83 ~vvii~g~TGSGKTTqlPq~lle~--~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~------- 153 (1283)
T TIGR01967 83 QVVIIAGETGSGKTTQLPKICLEL--GRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQV------- 153 (1283)
T ss_pred ceEEEeCCCCCCcHHHHHHHHHHc--CCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCccc-------
Confidence 357999999999999875554322 11223444455565442 223333332221 1 1122221 11110
Q ss_pred HHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcc-ccCCcchHHHHHHHHHhh--hcCcEEEEec
Q 039292 263 SLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAH-ALKDKNSYRWKNLMSVAR--NANQRLMLTG 339 (520)
Q Consensus 263 ~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH-~ikn~~s~~~~~l~~l~~--~~~~rl~LTg 339 (520)
.....|.++|.+.+...... + . .-..+++|||||+| +.-+.+-... .++.+.. ...+.+++||
T Consensus 154 -------s~~T~I~~~TdGiLLr~l~~---d-~--~L~~~~~IIIDEaHERsL~~D~LL~-lLk~il~~rpdLKlIlmSA 219 (1283)
T TIGR01967 154 -------SSNTLVKLMTDGILLAETQQ---D-R--FLSRYDTIIIDEAHERSLNIDFLLG-YLKQLLPRRPDLKIIITSA 219 (1283)
T ss_pred -------CCCceeeeccccHHHHHhhh---C-c--ccccCcEEEEcCcchhhccchhHHH-HHHHHHhhCCCCeEEEEeC
Confidence 12458999999999875422 1 1 12468999999999 5655443221 1222211 2345789999
Q ss_pred cCC
Q 039292 340 TPL 342 (520)
Q Consensus 340 TPi 342 (520)
|.-
T Consensus 220 Tld 222 (1283)
T TIGR01967 220 TID 222 (1283)
T ss_pred CcC
Confidence 984
No 135
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=97.55 E-value=0.00074 Score=68.45 Aligned_cols=173 Identities=20% Similarity=0.203 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCCCeEEE
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPSFSVLQ 248 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~v~~ 248 (520)
|-|..+++-.. ++...+.++.++|+||++.-- +-.|. ..+-++||.|.. |+..-...+.+.- +.+-.
T Consensus 23 ~LQE~A~~c~V----K~k~DVyVsMPTGaGKSLCyQ--LPaL~----~~gITIV~SPLiALIkDQiDHL~~LK--Vp~~S 90 (641)
T KOG0352|consen 23 RLQEQAINCIV----KRKCDVYVSMPTGAGKSLCYQ--LPALV----HGGITIVISPLIALIKDQIDHLKRLK--VPCES 90 (641)
T ss_pred hHHHHHHHHHH----hccCcEEEeccCCCchhhhhh--chHHH----hCCeEEEehHHHHHHHHHHHHHHhcC--CchhH
Confidence 67899998877 444578999999999996310 11111 234788889964 4444555555431 11111
Q ss_pred ecCCC-chhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC------cchHHH
Q 039292 249 YHGAG-RTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD------KNSYRW 321 (520)
Q Consensus 249 ~~g~~-~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn------~~s~~~ 321 (520)
++..- ...+.+.+..+.+. .+...++-+|+++......+ .-...........++++||||.+.. ++-.+.
T Consensus 91 LNSKlSt~ER~ri~~DL~~e--kp~~K~LYITPE~AAt~~FQ-~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~L 167 (641)
T KOG0352|consen 91 LNSKLSTVERSRIMGDLAKE--KPTIKMLYITPEGAATDGFQ-KLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTL 167 (641)
T ss_pred hcchhhHHHHHHHHHHHHhc--CCceeEEEEchhhhhhhhHH-HHHHHHhhhceeeeEEechhhhHhhhccccCcchhhh
Confidence 12211 11222223333222 23467788888876553211 1122233444678999999998742 222222
Q ss_pred HHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCC
Q 039292 322 KNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p 358 (520)
-.++... .....++||||.-..--+|++..|.+-.|
T Consensus 168 G~LRS~~-~~vpwvALTATA~~~VqEDi~~qL~L~~P 203 (641)
T KOG0352|consen 168 GSLRSVC-PGVPWVALTATANAKVQEDIAFQLKLRNP 203 (641)
T ss_pred hhHHhhC-CCCceEEeecccChhHHHHHHHHHhhcCc
Confidence 2333322 33457889999998889999999998776
No 136
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.52 E-value=0.00012 Score=73.86 Aligned_cols=157 Identities=19% Similarity=0.148 Sum_probs=96.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHH-HHHHHHHHHHhCCCCCCEEEEeCCcch-hh---HHHHHHHhc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQ-AITYLMLLKHLNNDPGPHLIVCPASVL-EN---WERELKKWC 241 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~-aia~l~~l~~~~~~~~~~LIV~P~sll-~~---W~~E~~~~~ 241 (520)
+-.|.|+..+.-+++ + ..++--.-+|+|||.. .|-++..++.....+-+.||+.|+.-+ .| ...++.++.
T Consensus 43 ~ptpiqRKTipliLe----~-~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt 117 (529)
T KOG0337|consen 43 TPTPIQRKTIPLILE----G-RDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT 117 (529)
T ss_pred CCCchhcccccceee----c-cccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc
Confidence 456788888876663 2 2223334599999954 233344454434455688999997544 33 555565655
Q ss_pred CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC--cchH
Q 039292 242 PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD--KNSY 319 (520)
Q Consensus 242 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn--~~s~ 319 (520)
.--..+.++|.........+. .+.+|+++|...+..... .-.+.-....|||+||+.+|-. ..-+
T Consensus 118 ~lr~s~~~ggD~~eeqf~~l~--------~npDii~ATpgr~~h~~v-----em~l~l~sveyVVfdEadrlfemgfqeq 184 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEEQFILLN--------ENPDIIIATPGRLLHLGV-----EMTLTLSSVEYVVFDEADRLFEMGFQEQ 184 (529)
T ss_pred chhhhhhcccchHHHHHHHhc--------cCCCEEEecCceeeeeeh-----heeccccceeeeeehhhhHHHhhhhHHH
Confidence 333344666665443333222 246999999998865321 1113344577999999999954 3455
Q ss_pred HHHHHHHHhhhcCcEEEEeccCC
Q 039292 320 RWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 320 ~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
..+.+..+. .....+++|||--
T Consensus 185 l~e~l~rl~-~~~QTllfSatlp 206 (529)
T KOG0337|consen 185 LHEILSRLP-ESRQTLLFSATLP 206 (529)
T ss_pred HHHHHHhCC-CcceEEEEeccCc
Confidence 666676664 4568999999964
No 137
>PRK10536 hypothetical protein; Provisional
Probab=97.52 E-value=0.00043 Score=67.08 Aligned_cols=152 Identities=16% Similarity=0.100 Sum_probs=80.0
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCe
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFS 245 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~ 245 (520)
..+-..|...+.++.. + .=+++-.+.|+|||..++++...... .+....++|+=|.-.. .+...|.|+.-
T Consensus 58 ~p~n~~Q~~~l~al~~----~-~lV~i~G~aGTGKT~La~a~a~~~l~-~~~~~kIiI~RP~v~~----ge~LGfLPG~~ 127 (262)
T PRK10536 58 LARNEAQAHYLKAIES----K-QLIFATGEAGCGKTWISAAKAAEALI-HKDVDRIIVTRPVLQA----DEDLGFLPGDI 127 (262)
T ss_pred cCCCHHHHHHHHHHhc----C-CeEEEECCCCCCHHHHHHHHHHHHHh-cCCeeEEEEeCCCCCc----hhhhCcCCCCH
Confidence 3566789888887763 2 23578899999999999998875432 2334444444443222 23333443310
Q ss_pred ---EEEecCC-----CchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc
Q 039292 246 ---VLQYHGA-----GRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN 317 (520)
Q Consensus 246 ---v~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~ 317 (520)
+..|... ..-.....+..+.. .....|-|.+...++- ..+.-++||+|||+++..
T Consensus 128 ~eK~~p~~~pi~D~L~~~~~~~~~~~~~~---~~~~~Iei~~l~ymRG------------rtl~~~~vIvDEaqn~~~-- 190 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRLGASFMQYCLR---PEIGKVEIAPFAYMRG------------RTFENAVVILDEAQNVTA-- 190 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHH---hccCcEEEecHHHhcC------------CcccCCEEEEechhcCCH--
Confidence 0000000 00000000111100 0012455555444432 123457999999999843
Q ss_pred hHHHHHHHHHhhhcCcEEEEeccCCCCCH
Q 039292 318 SYRWKNLMSVARNANQRLMLTGTPLQNDL 346 (520)
Q Consensus 318 s~~~~~l~~l~~~~~~rl~LTgTPi~n~~ 346 (520)
......+..+ ....+++++|-|-|.++
T Consensus 191 ~~~k~~ltR~--g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 191 AQMKMFLTRL--GENVTVIVNGDITQCDL 217 (262)
T ss_pred HHHHHHHhhc--CCCCEEEEeCChhhccC
Confidence 3344444455 67789999999987653
No 138
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00063 Score=73.81 Aligned_cols=103 Identities=22% Similarity=0.289 Sum_probs=64.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhC---CCCCCEEEEeCCcc--h---hhHHHHHHHhcCCCe-EEEecCCCchhhh
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLN---NDPGPHLIVCPASV--L---ENWERELKKWCPSFS-VLQYHGAGRTAYS 258 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~---~~~~~~LIV~P~sl--l---~~W~~E~~~~~p~~~-v~~~~g~~~~~~~ 258 (520)
.-+|+|.++|+|||.|.=-|+..--+.. ..++=+=|.-|..+ + .-...|+..+..... -+.|.|...
T Consensus 272 ~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti~---- 347 (1172)
T KOG0926|consen 272 PVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTIG---- 347 (1172)
T ss_pred CeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccccC----
Confidence 3589999999999999988886432211 11223344455333 2 225556666333222 233444432
Q ss_pred HHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccc
Q 039292 259 RELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHA 312 (520)
Q Consensus 259 ~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ 312 (520)
.+..|.++|-+.|.+.. ...|.-..+.+||+||||-
T Consensus 348 ------------e~T~IkFMTDGVLLrEi------~~DflL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 348 ------------EDTSIKFMTDGVLLREI------ENDFLLTKYSVIILDEAHE 383 (1172)
T ss_pred ------------CCceeEEecchHHHHHH------HHhHhhhhceeEEechhhh
Confidence 24689999999998742 3445566899999999995
No 139
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=97.51 E-value=0.0009 Score=74.54 Aligned_cols=128 Identities=16% Similarity=0.116 Sum_probs=79.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh----HHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN----WERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~----W~~E~~~~~p 242 (520)
..++-|+.|.--|. .|.|.-..||.|||++|...+... ...+..+-||+|+..|.. |...+-+++
T Consensus 80 ~~~dvQlig~l~l~-------~G~iaEm~TGEGKTLvA~l~a~l~---al~G~~v~vvT~neyLA~Rd~e~~~~~~~~L- 148 (796)
T PRK12906 80 RPFDVQIIGGIVLH-------EGNIAEMKTGEGKTLTATLPVYLN---ALTGKGVHVVTVNEYLSSRDATEMGELYRWL- 148 (796)
T ss_pred CCchhHHHHHHHHh-------cCCcccccCCCCCcHHHHHHHHHH---HHcCCCeEEEeccHHHHHhhHHHHHHHHHhc-
Confidence 56677888875553 356899999999999875444333 235677889999877643 777777776
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccC
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
++.+.+..|.......+..- ..+|+-+|-..|..+..... .....+....+.++||||+..+.
T Consensus 149 Gl~vg~i~~~~~~~~r~~~y---------~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAAY---------NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred CCeEEEeCCCCCHHHHHHHh---------cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 57787777654333222111 24777666555432211110 01122334578999999999773
No 140
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=97.51 E-value=0.00034 Score=79.08 Aligned_cols=142 Identities=16% Similarity=0.194 Sum_probs=80.9
Q ss_pred CceEEeCCCCCCHHHHHHHHH-HHHHHhCC-------CCCCEEEEeC-CcchhhHHHHHHHhcCCCe--EEEecCCCchh
Q 039292 188 AGAILADEMGLGKTIQAITYL-MLLKHLNN-------DPGPHLIVCP-ASVLENWERELKKWCPSFS--VLQYHGAGRTA 256 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l-~~l~~~~~-------~~~~~LIV~P-~sll~~W~~E~~~~~p~~~--v~~~~g~~~~~ 256 (520)
...+|+.++|+|||..|+--+ ..+....+ ....+..|+| ..|+..|...|.++...+. |.-.+|.....
T Consensus 326 EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~ 405 (1674)
T KOG0951|consen 326 ENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLG 405 (1674)
T ss_pred CcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccch
Confidence 457999999999998765433 33321111 1235788999 5667779999999986554 44455654322
Q ss_pred hhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc-chH----HHHHHHHHh--h
Q 039292 257 YSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK-NSY----RWKNLMSVA--R 329 (520)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~-~s~----~~~~l~~l~--~ 329 (520)
.... ....|+++|.+..--.... ..+.... .-+.++|+||.|.+-.. .+. ..+..+... .
T Consensus 406 ~~qi----------eeTqVIV~TPEK~DiITRk-~gdraY~--qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~ 472 (1674)
T KOG0951|consen 406 KEQI----------EETQVIVTTPEKWDIITRK-SGDRAYE--QLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTE 472 (1674)
T ss_pred hhhh----------hcceeEEeccchhhhhhcc-cCchhHH--HHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcc
Confidence 2111 1358999998766211100 0011111 12568999999999432 222 222222210 0
Q ss_pred hcCcEEEEeccCC
Q 039292 330 NANQRLMLTGTPL 342 (520)
Q Consensus 330 ~~~~rl~LTgTPi 342 (520)
...+.++||||--
T Consensus 473 e~~RlVGLSATLP 485 (1674)
T KOG0951|consen 473 EGSRLVGLSATLP 485 (1674)
T ss_pred cCceeeeecccCC
Confidence 2355688999964
No 141
>PRK14873 primosome assembly protein PriA; Provisional
Probab=97.50 E-value=0.0012 Score=73.02 Aligned_cols=134 Identities=10% Similarity=-0.094 Sum_probs=85.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC-CcchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP-ASVLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGL 269 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P-~sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~ 269 (520)
|+..-+|+|||-.-+.++..... .++.+||++| .++..|+.+.|...++...+.+||+.-....+........
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~---~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~--- 237 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLR---AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVL--- 237 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHH---cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHh---
Confidence 33333599999988888776644 4567999999 4678999999999998677888888754433322222222
Q ss_pred CCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcccc--CCcchHH----HHHHHHHhhhcCcEEEEeccCC
Q 039292 270 PPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHAL--KDKNSYR----WKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 270 ~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~i--kn~~s~~----~~~l~~l~~~~~~rl~LTgTPi 342 (520)
.+...|+|=|...+- .--.+.++|||||=|.- |...+.. --++.......-..++-|+||-
T Consensus 238 ~G~~~IViGtRSAvF------------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 238 RGQARVVVGTRSAVF------------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred CCCCcEEEEcceeEE------------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 234688888876552 22336799999999953 3332222 1122222223445677799995
No 142
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=97.49 E-value=6.9e-05 Score=74.74 Aligned_cols=157 Identities=21% Similarity=0.330 Sum_probs=86.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHH----HHHHHHHH----HHHhCCCCCCE-EEEeCCcchhhHHHH-
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTI----QAITYLML----LKHLNNDPGPH-LIVCPASVLENWERE- 236 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi----~aia~l~~----l~~~~~~~~~~-LIV~P~sll~~W~~E- 236 (520)
+..|.|..|+--.+ .| +..|--.-+|+|||+ .+|.|+.. +.. .+..||+ |||||..-+..-..+
T Consensus 192 ~PTpIQvQGlPvvL----sG-RDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf-~~~EGP~gLiicPSRELArQt~~i 265 (610)
T KOG0341|consen 192 HPTPIQVQGLPVVL----SG-RDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPF-ARGEGPYGLIICPSRELARQTHDI 265 (610)
T ss_pred CCCceeecCcceEe----ec-CceeeEEeecCCceEEEeHHHHHHHHHHHhcCcc-ccCCCCeeEEEcCcHHHHHHHHHH
Confidence 34466777765554 33 345656679999994 34443321 111 2344554 999997655333333
Q ss_pred HHHhc--------CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEe
Q 039292 237 LKKWC--------PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMD 308 (520)
Q Consensus 237 ~~~~~--------p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiD 308 (520)
+..|+ |.++..+..|.-.-+ ..+.... .+.+|+++|++.+..... .+.+.---..++.+|
T Consensus 266 ie~~~~~L~e~g~P~lRs~LciGG~~v~--eql~~v~-----~GvHivVATPGRL~DmL~-----KK~~sLd~CRyL~lD 333 (610)
T KOG0341|consen 266 IEQYVAALQEAGYPELRSLLCIGGVPVR--EQLDVVR-----RGVHIVVATPGRLMDMLA-----KKIMSLDACRYLTLD 333 (610)
T ss_pred HHHHHHHHHhcCChhhhhhhhhcCccHH--HHHHHHh-----cCeeEEEcCcchHHHHHH-----HhhccHHHHHHhhhh
Confidence 22222 455544443332221 2222222 257999999999987652 233333346689999
Q ss_pred CccccCC--cchHHHHHHHHHhhhcCcEEEEeccCC
Q 039292 309 EAHALKD--KNSYRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 309 EaH~ikn--~~s~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
||.|+-. ..-.. +.+..+....+..+++|||--
T Consensus 334 EADRmiDmGFEddi-r~iF~~FK~QRQTLLFSATMP 368 (610)
T KOG0341|consen 334 EADRMIDMGFEDDI-RTIFSFFKGQRQTLLFSATMP 368 (610)
T ss_pred hHHHHhhccchhhH-HHHHHHHhhhhheeeeecccc
Confidence 9999853 22222 233333334566899999963
No 143
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.48 E-value=0.00027 Score=61.44 Aligned_cols=115 Identities=22% Similarity=0.243 Sum_probs=63.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHh---CCCCCCEEEEeCCcc-hhhHHHHHHHhcC-CCeEEEecCCCchhhhHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHL---NNDPGPHLIVCPASV-LENWERELKKWCP-SFSVLQYHGAGRTAYSRELSS 263 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~---~~~~~~~LIV~P~sl-l~~W~~E~~~~~p-~~~v~~~~g~~~~~~~~~~~~ 263 (520)
.+++..++|+|||..+-.++..+... .....-+.+-||... ...+..++..... .... +.
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~----~~----------- 70 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS----RQ----------- 70 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----TS-----------
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----cC-----------
Confidence 46888899999999988887655321 111222344445433 3445555543321 1000 00
Q ss_pred HhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccC
Q 039292 264 LAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 264 ~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTP 341 (520)
+...+... -...+....-.+|||||+|++. .......++.+.......++++|||
T Consensus 71 ---------------~~~~l~~~------~~~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 71 ---------------TSDELRSL------LIDALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp ----------------HHHHHHH------HHHHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred ---------------CHHHHHHH------HHHHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 00111110 2233444444799999999984 2556667777766677789999999
No 144
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=97.46 E-value=0.00036 Score=72.41 Aligned_cols=129 Identities=20% Similarity=0.229 Sum_probs=83.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHH----HHHHHHHHHHHH-----hCCCCCCEEEEeCCcchhh-HHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKT----IQAITYLMLLKH-----LNNDPGPHLIVCPASVLEN-WERE 236 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKT----i~aia~l~~l~~-----~~~~~~~~LIV~P~sll~~-W~~E 236 (520)
.--|.|+.++--++ +. +..|+-.|+|+||| +..+..|..+.. ....+...+|++|+..+.| -..|
T Consensus 267 eptpIqR~aipl~l----Q~-rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeE 341 (673)
T KOG0333|consen 267 EPTPIQRQAIPLGL----QN-RDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEE 341 (673)
T ss_pred CCchHHHhhccchh----cc-CCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHH
Confidence 45688999987555 22 45799999999999 333444433321 0112234688999876655 6677
Q ss_pred HHHhcC--CCeEEE-ecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcccc
Q 039292 237 LKKWCP--SFSVLQ-YHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHAL 313 (520)
Q Consensus 237 ~~~~~p--~~~v~~-~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~i 313 (520)
-.+|+- +++++. .+|.........+.. ++.|+|.|++.|.... ....|......+||+|||.++
T Consensus 342 t~kf~~~lg~r~vsvigg~s~EEq~fqls~--------gceiviatPgrLid~L-----enr~lvl~qctyvvldeadrm 408 (673)
T KOG0333|consen 342 TNKFGKPLGIRTVSVIGGLSFEEQGFQLSM--------GCEIVIATPGRLIDSL-----ENRYLVLNQCTYVVLDEADRM 408 (673)
T ss_pred HHHhcccccceEEEEecccchhhhhhhhhc--------cceeeecCchHHHHHH-----HHHHHHhccCceEeccchhhh
Confidence 777752 345444 445444333233332 5799999999987644 455566678899999999987
No 145
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=97.40 E-value=0.00054 Score=69.74 Aligned_cols=154 Identities=18% Similarity=0.199 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHH-HHHHHHHHHHhC----C-CCCCEEEEeCCc-chhhHHHHHH---Hh
Q 039292 171 YQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQ-AITYLMLLKHLN----N-DPGPHLIVCPAS-VLENWERELK---KW 240 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~-aia~l~~l~~~~----~-~~~~~LIV~P~s-ll~~W~~E~~---~~ 240 (520)
.|..+|-.++ .| ..++.-.-+|+|||.. +|-++..+.... . .+-..+|++|+. +..|-...+. .+
T Consensus 45 IQs~aIplaL----Eg-KDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~ 119 (569)
T KOG0346|consen 45 IQSSAIPLAL----EG-KDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEY 119 (569)
T ss_pred hhhcccchhh----cC-cceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHH
Confidence 6778887777 33 3456667899999954 233333333211 1 122468999975 4555555544 45
Q ss_pred cC-CCeEEEecCC-CchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch
Q 039292 241 CP-SFSVLQYHGA-GRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 241 ~p-~~~v~~~~g~-~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
|+ .++++-+..+ +....+..+ ....+|+|+|+..+..+..... ........++|+|||..+....-
T Consensus 120 c~k~lr~~nl~s~~sdsv~~~~L--------~d~pdIvV~TP~~ll~~~~~~~----~~~~~~l~~LVvDEADLllsfGY 187 (569)
T KOG0346|consen 120 CSKDLRAINLASSMSDSVNSVAL--------MDLPDIVVATPAKLLRHLAAGV----LEYLDSLSFLVVDEADLLLSFGY 187 (569)
T ss_pred HHHhhhhhhhhcccchHHHHHHH--------ccCCCeEEeChHHHHHHHhhcc----chhhhheeeEEechhhhhhhccc
Confidence 65 4454444422 222221111 1245999999999988653211 12333577899999998854221
Q ss_pred -HHHHHHHHHhhhcCcEEEEeccC
Q 039292 319 -YRWKNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 319 -~~~~~l~~l~~~~~~rl~LTgTP 341 (520)
.-.+.+.....+.-..++||||-
T Consensus 188 eedlk~l~~~LPr~~Q~~LmSATl 211 (569)
T KOG0346|consen 188 EEDLKKLRSHLPRIYQCFLMSATL 211 (569)
T ss_pred HHHHHHHHHhCCchhhheeehhhh
Confidence 11122222222344567777775
No 146
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.39 E-value=0.0019 Score=74.90 Aligned_cols=84 Identities=15% Similarity=0.180 Sum_probs=55.3
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh--HHHHH---HHhc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN--WEREL---KKWC 241 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~--W~~E~---~~~~ 241 (520)
..||-|..-.+.+......+ .-+++=..||+|||+--+.-+ +.......++++|-+++..+.+ +.+++ .+.+
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~-~~~~iEA~TGtGKTlaYLlpa--~~~a~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~ 333 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDS-EHALIEAGTGTGKSLAYLLPA--AYFAKKKEEPVVISTYTIQLQQQLLEKDIPLLQKIF 333 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcC-CCEEEECCCCCchhHHHHHHH--HHHhhccCCeEEEEcCCHHHHHHHHHhhHHHHHHHc
Confidence 67999999888888777766 345677799999997543332 2223345688888888766543 55543 4444
Q ss_pred C-CCeEEEecCCC
Q 039292 242 P-SFSVLQYHGAG 253 (520)
Q Consensus 242 p-~~~v~~~~g~~ 253 (520)
+ .+++.+..|..
T Consensus 334 ~~~~~~~~lKGr~ 346 (928)
T PRK08074 334 PFPVEAALLKGRS 346 (928)
T ss_pred CCCceEEEEEccc
Confidence 3 45666655543
No 147
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.37 E-value=0.0026 Score=72.57 Aligned_cols=79 Identities=19% Similarity=0.313 Sum_probs=51.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh--HHHHHH---Hhc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN--WERELK---KWC 241 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~--W~~E~~---~~~ 241 (520)
..||-|..-...+......+ .-+++-..+|+|||+.-+.-+ +.. ....+++|.||+..+.+ +.+++. +++
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~-~~~~~eA~tGtGKT~ayllp~--l~~--~~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~ 319 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDG-PASFIEAQTGIGKTYGYLLPL--LAQ--SDQRQIIVSVPTKILQDQIMAEEVKAIQEVF 319 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCC-CcEEEECCCCCcHHHHHHHHH--HHh--cCCCcEEEEeCcHHHHHHHHHHHHHHHHHhc
Confidence 68999999888888777766 445778899999997543332 211 13578999999876644 445544 443
Q ss_pred CCCeEEEecC
Q 039292 242 PSFSVLQYHG 251 (520)
Q Consensus 242 p~~~v~~~~g 251 (520)
++++.+..|
T Consensus 320 -~~~~~~~kg 328 (820)
T PRK07246 320 -HIDCHSLKG 328 (820)
T ss_pred -CCcEEEEEC
Confidence 344444433
No 148
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.35 E-value=0.0032 Score=69.83 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=57.1
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPS 243 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~ 243 (520)
...|-+.|..+|.+.+. ...-.|+-..+|+|||.++++++..+.. .+.++||++|++. +.+....+... +
T Consensus 155 ~~~ln~~Q~~Av~~~l~----~~~~~lI~GpPGTGKT~t~~~ii~~~~~---~g~~VLv~a~sn~Avd~l~e~l~~~--~ 225 (637)
T TIGR00376 155 DPNLNESQKEAVSFALS----SKDLFLIHGPPGTGKTRTLVELIRQLVK---RGLRVLVTAPSNIAVDNLLERLALC--D 225 (637)
T ss_pred CCCCCHHHHHHHHHHhc----CCCeEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEEcCcHHHHHHHHHHHHhC--C
Confidence 35789999999988762 2124688889999999999888876643 2448999999765 66777777653 4
Q ss_pred CeEEEecCC
Q 039292 244 FSVLQYHGA 252 (520)
Q Consensus 244 ~~v~~~~g~ 252 (520)
.+++.++..
T Consensus 226 ~~vvRlg~~ 234 (637)
T TIGR00376 226 QKIVRLGHP 234 (637)
T ss_pred CcEEEeCCc
Confidence 555555443
No 149
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.34 E-value=0.00073 Score=69.68 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=34.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERE 236 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E 236 (520)
+|+-..+|+|||+.++.++..+.. .......+++|+...+.+..++
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~-~~~~~~~~~l~~n~~l~~~l~~ 49 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQN-SEEGKKVLYLCGNHPLRNKLRE 49 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhc-cccCCceEEEEecchHHHHHHH
Confidence 467778999999999999887722 3456677888888777665554
No 150
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.33 E-value=0.00083 Score=67.73 Aligned_cols=137 Identities=18% Similarity=0.275 Sum_probs=83.7
Q ss_pred ceEEeCCCCCCHHHHHHH--HHHHH----HHhCCCCCCEEEEeCCcch-hhHHHHHHHhc--CCCeEEEecCCCchhhhH
Q 039292 189 GAILADEMGLGKTIQAIT--YLMLL----KHLNNDPGPHLIVCPASVL-ENWERELKKWC--PSFSVLQYHGAGRTAYSR 259 (520)
Q Consensus 189 g~ILademGlGKTi~aia--~l~~l----~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~--p~~~v~~~~g~~~~~~~~ 259 (520)
.+|....+|.|||+.-+- |+... .......-.+||+.|+.-| .|-.-|..++. ....+.+|.|.++..-..
T Consensus 259 DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie 338 (629)
T KOG0336|consen 259 DLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIE 338 (629)
T ss_pred ceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHH
Confidence 578888999999974321 11111 0112233457999997655 44555655553 345567777777665444
Q ss_pred HHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC--cchHHHHHHHHHhhhcCcEEEE
Q 039292 260 ELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD--KNSYRWKNLMSVARNANQRLML 337 (520)
Q Consensus 260 ~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn--~~s~~~~~l~~l~~~~~~rl~L 337 (520)
.+.. ++.++|+|+..|.... ....+.-....++|+|||.++.. ...+..+.+..+ +..+..+|
T Consensus 339 ~lkr--------gveiiiatPgrlndL~-----~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldi--RPDRqtvm 403 (629)
T KOG0336|consen 339 DLKR--------GVEIIIATPGRLNDLQ-----MDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDI--RPDRQTVM 403 (629)
T ss_pred HHhc--------CceEEeeCCchHhhhh-----hcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhc--CCcceeee
Confidence 4433 6799999999997643 22233333577999999999854 455666666666 34444444
Q ss_pred -ecc
Q 039292 338 -TGT 340 (520)
Q Consensus 338 -TgT 340 (520)
|||
T Consensus 404 TSAT 407 (629)
T KOG0336|consen 404 TSAT 407 (629)
T ss_pred eccc
Confidence 444
No 151
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.00083 Score=70.10 Aligned_cols=70 Identities=20% Similarity=0.260 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCCeE
Q 039292 171 YQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSFSV 246 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~v 246 (520)
-|-.||.-|......|.+--.|-.-+|+|||.++.-+|... .+|+||++|+ .|..|-..||+.|+|.-.|
T Consensus 16 DQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~AnVI~~~------~rPtLV~AhNKTLAaQLy~Efk~fFP~NaV 86 (663)
T COG0556 16 DQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMANVIAKV------QRPTLVLAHNKTLAAQLYSEFKEFFPENAV 86 (663)
T ss_pred CcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHHHHHHHh------CCCeEEEecchhHHHHHHHHHHHhCcCcce
Confidence 57889999998888877666777779999999988877644 5799999995 5568899999999998543
No 152
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=97.12 E-value=0.0023 Score=68.66 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=80.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-----hhHHHHHHHhcCCCeEEEecCCCchhhhHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-----ENWERELKKWCPSFSVLQYHGAGRTAYSRELS 262 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-----~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~ 262 (520)
.-+|+..|||+|||.|.--++..--. ...|.+-|.-|..+. .-...|..--......+...-....
T Consensus 67 qvlIviGeTGsGKSTQipQyL~eaG~--~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~t------- 137 (674)
T KOG0922|consen 67 QVLIVIGETGSGKSTQIPQYLAEAGF--ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDST------- 137 (674)
T ss_pred CEEEEEcCCCCCccccHhHHHHhccc--ccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccC-------
Confidence 35899999999999998877753322 233446666674332 2244444332222222211111111
Q ss_pred HHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchH-HHHHHHHHhh-hcC-cEEEEec
Q 039292 263 SLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSY-RWKNLMSVAR-NAN-QRLMLTG 339 (520)
Q Consensus 263 ~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~-~~~~l~~l~~-~~~-~rl~LTg 339 (520)
.....|..+|-++|.+..... -.-.++++||+||||-= .-++. ..-.++.+.. +.. +.|++||
T Consensus 138 -------s~~TrikymTDG~LLRE~l~D------p~LskYsvIIlDEAHER-sl~TDiLlGlLKki~~~R~~LklIimSA 203 (674)
T KOG0922|consen 138 -------SKDTRIKYMTDGMLLREILKD------PLLSKYSVIILDEAHER-SLHTDILLGLLKKILKKRPDLKLIIMSA 203 (674)
T ss_pred -------CCceeEEEecchHHHHHHhcC------CccccccEEEEechhhh-hhHHHHHHHHHHHHHhcCCCceEEEEee
Confidence 113588999999998743211 11236899999999941 11222 1222223321 222 5688999
Q ss_pred cCCCCCHHHHHHHHH
Q 039292 340 TPLQNDLHELWSLLE 354 (520)
Q Consensus 340 TPi~n~~~el~~ll~ 354 (520)
|-=-..+.++|+-..
T Consensus 204 Tlda~kfS~yF~~a~ 218 (674)
T KOG0922|consen 204 TLDAEKFSEYFNNAP 218 (674)
T ss_pred eecHHHHHHHhcCCc
Confidence 998778888877633
No 153
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.06 E-value=0.0077 Score=67.04 Aligned_cols=164 Identities=16% Similarity=0.222 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc--CCCe-
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC--PSFS- 245 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~--p~~~- 245 (520)
.+|.+-+ .....+ ..+++..++-+|||....-++....+ ....+-++.|+|+ .++.|-..++..-+ +.+.
T Consensus 514 ~WQ~elL----DsvDr~-eSavIVAPTSaGKTfisfY~iEKVLR-esD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~r 587 (1330)
T KOG0949|consen 514 EWQRELL----DSVDRN-ESAVIVAPTSAGKTFISFYAIEKVLR-ESDSDVVIYVAPTKALVNQVSANVYARFDTKTFLR 587 (1330)
T ss_pred HHHHHHh----hhhhcc-cceEEEeeccCCceeccHHHHHHHHh-hcCCCEEEEecchHHHhhhhhHHHHHhhccCcccc
Confidence 3666543 333344 45688888999999988777766655 4567788999995 56677666665332 2211
Q ss_pred EEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc-chHHHHHH
Q 039292 246 VLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK-NSYRWKNL 324 (520)
Q Consensus 246 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~-~s~~~~~l 324 (520)
.....|.-.... ... +....|+||.++.+......-.....+. -+..++|+||+|.|.|. .+..+..+
T Consensus 588 g~sl~g~ltqEY--------sin-p~nCQVLITvPecleslLlspp~~q~~c--erIRyiIfDEVH~iG~~ed~l~~Eql 656 (1330)
T KOG0949|consen 588 GVSLLGDLTQEY--------SIN-PWNCQVLITVPECLESLLLSPPHHQKFC--ERIRYIIFDEVHLIGNEEDGLLWEQL 656 (1330)
T ss_pred chhhHhhhhHHh--------cCC-chhceEEEEchHHHHHHhcCchhhhhhh--hcceEEEechhhhccccccchHHHHH
Confidence 111122211111 111 2357899999999877543321111222 24679999999999885 45666666
Q ss_pred HHHhhhcCcEEEEeccCCCCCHHHHHHHHH
Q 039292 325 MSVARNANQRLMLTGTPLQNDLHELWSLLE 354 (520)
Q Consensus 325 ~~l~~~~~~rl~LTgTPi~n~~~el~~ll~ 354 (520)
..+ -....++||||- +|+..++..++
T Consensus 657 l~l--i~CP~L~LSATi--gN~~l~qkWln 682 (1330)
T KOG0949|consen 657 LLL--IPCPFLVLSATI--GNPNLFQKWLN 682 (1330)
T ss_pred HHh--cCCCeeEEeccc--CCHHHHHHHHH
Confidence 665 355689999994 66666666665
No 154
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=97.02 E-value=0.003 Score=71.07 Aligned_cols=142 Identities=18% Similarity=0.156 Sum_probs=79.5
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-hh----HHHHHHHhcCCCeEEEecCCCchhhhHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-EN----WERELKKWCPSFSVLQYHGAGRTAYSRELS 262 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-~~----W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~ 262 (520)
.-+|+..++|+|||.|.=-++...-. ...+.+.+.=|..+- .+ -.+|+..-.+..-.+.....+...
T Consensus 66 ~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s------ 137 (845)
T COG1643 66 QVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVS------ 137 (845)
T ss_pred CEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCC------
Confidence 45899999999999998777654422 445566666674432 22 333443333333333333333221
Q ss_pred HHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHH-H-Hhh-h-cCcEEEEe
Q 039292 263 SLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLM-S-VAR-N-ANQRLMLT 338 (520)
Q Consensus 263 ~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~-~-l~~-~-~~~rl~LT 338 (520)
....|-++|-++|.+.... . ..-..+++||+||+|.= +-++.....+. . +.. + --+.|+||
T Consensus 138 --------~~Trik~mTdGiLlrei~~----D--~~Ls~ys~vIiDEaHER-Sl~tDilLgllk~~~~~rr~DLKiIimS 202 (845)
T COG1643 138 --------PRTRIKVMTDGILLREIQN----D--PLLSGYSVVIIDEAHER-SLNTDILLGLLKDLLARRRDDLKLIIMS 202 (845)
T ss_pred --------CCceeEEeccHHHHHHHhh----C--cccccCCEEEEcchhhh-hHHHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 2357888999998874321 1 12336899999999941 11222222221 1 111 1 13457899
Q ss_pred ccCCCCCHHHHHHH
Q 039292 339 GTPLQNDLHELWSL 352 (520)
Q Consensus 339 gTPi~n~~~el~~l 352 (520)
||-=...+..++.-
T Consensus 203 ATld~~rfs~~f~~ 216 (845)
T COG1643 203 ATLDAERFSAYFGN 216 (845)
T ss_pred cccCHHHHHHHcCC
Confidence 99876666666553
No 155
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.01 E-value=0.0081 Score=67.65 Aligned_cols=65 Identities=18% Similarity=0.097 Sum_probs=47.3
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERE 236 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E 236 (520)
..|.+-|+.++..+.. .+ -++|...+|+|||..+-+++..+.. .+...++++++|+........+
T Consensus 322 ~~l~~~Q~~Ai~~~~~---~~--~~iitGgpGTGKTt~l~~i~~~~~~-~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQ---HK--VVILTGGPGTGKTTITRAIIELAEE-LGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCHHHHHHHHHHHh---CC--eEEEECCCCCCHHHHHHHHHHHHHH-cCCCceEEEEeCchHHHHHHHH
Confidence 4789999999988752 22 4689999999999888777766643 2222678888998766654444
No 156
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.00 E-value=0.0039 Score=68.49 Aligned_cols=138 Identities=20% Similarity=0.165 Sum_probs=81.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh----H----HHHH-HHhcCC--CeEEEecCCCchhhh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN----W----EREL-KKWCPS--FSVLQYHGAGRTAYS 258 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~----W----~~E~-~~~~p~--~~v~~~~g~~~~~~~ 258 (520)
|=+-.|||+|||.+-+-++..|... -....++||||+..+.- - .++| ..++.+ ...++|....
T Consensus 77 iDI~METGTGKTy~YlrtmfeLhk~-YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~----- 150 (985)
T COG3587 77 IDILMETGTGKTYTYLRTMFELHKK-YGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDI----- 150 (985)
T ss_pred eeEEEecCCCceeeHHHHHHHHHHH-hCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHH-----
Confidence 3456799999999988888877653 35568999999665422 2 2233 233322 2333333111
Q ss_pred HHHHHHhhcCCCCCccEEEeehhhHhhhh---ccc--------------cchHHHHhhcCccEEEEeCccccCCcchHHH
Q 039292 259 RELSSLAKAGLPPPFNVLLVCYSLFERHS---VQQ--------------KDDRKILKRWRWSCVLMDEAHALKDKNSYRW 321 (520)
Q Consensus 259 ~~~~~~~~~~~~~~~~vlitty~~l~~~~---~~~--------------~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~ 321 (520)
... ..+......|++++.+.+.+.. ... ......+...+ -.||+||-|++... .+.+
T Consensus 151 -~~~---~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~r-PIvIvDEPh~f~~~-~k~~ 224 (985)
T COG3587 151 -EKF---KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMR-PIVIVDEPHRFLGD-DKTY 224 (985)
T ss_pred -HHH---hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcC-CEEEecChhhcccc-hHHH
Confidence 011 1122235688999888886641 100 00111122222 37999999999765 6788
Q ss_pred HHHHHHhhhcCcEEEEeccC
Q 039292 322 KNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTP 341 (520)
.++..+ +....+=.+||-
T Consensus 225 ~~i~~l--~pl~ilRfgATf 242 (985)
T COG3587 225 GAIKQL--NPLLILRFGATF 242 (985)
T ss_pred HHHHhh--CceEEEEecccc
Confidence 888888 666666677775
No 157
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.93 E-value=0.0048 Score=68.71 Aligned_cols=157 Identities=15% Similarity=0.116 Sum_probs=92.4
Q ss_pred CCCCCCCCcc----CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchh
Q 039292 157 CGDEDSDFQP----VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLE 231 (520)
Q Consensus 157 ~~~~~~~~~~----~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~ 231 (520)
...++|.+.. .|-.-|+.|+...+...... .|++. +|+|||.+..+++..|.. .++.+|+.+=+ +.+.
T Consensus 655 ~~~~~p~~~~~~~~~LN~dQr~A~~k~L~aedy~---LI~GM-PGTGKTTtI~~LIkiL~~---~gkkVLLtsyThsAVD 727 (1100)
T KOG1805|consen 655 SKVLIPKIKKIILLRLNNDQRQALLKALAAEDYA---LILGM-PGTGKTTTISLLIKILVA---LGKKVLLTSYTHSAVD 727 (1100)
T ss_pred ccccCchhhHHHHhhcCHHHHHHHHHHHhccchh---eeecC-CCCCchhhHHHHHHHHHH---cCCeEEEEehhhHHHH
Confidence 3344555555 88899999998777654433 36665 999999998888877744 56788888875 5578
Q ss_pred hHHHHHHHhcCCCeEEEecCCCchhhh---------------HHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHH
Q 039292 232 NWERELKKWCPSFSVLQYHGAGRTAYS---------------RELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKI 296 (520)
Q Consensus 232 ~W~~E~~~~~p~~~v~~~~g~~~~~~~---------------~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~ 296 (520)
|-.-.+..+. ..++.++...+.... ..+..+ .....||.+|--.+ +...
T Consensus 728 NILiKL~~~~--i~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~-----~~~~~IVa~TClgi---------~~pl 791 (1100)
T KOG1805|consen 728 NILIKLKGFG--IYILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKF-----LDQTSIVACTCLGI---------NHPL 791 (1100)
T ss_pred HHHHHHhccC--cceeecCCccccchHHHHHhcccccchhhHHHHHHH-----hCCCcEEEEEccCC---------Cchh
Confidence 8777776653 222222222111100 011111 11234444443222 3345
Q ss_pred HhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCC
Q 039292 297 LKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 297 l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~ 343 (520)
|....||++|+|||-.+.-+- .+.-+ ....+++|-|-+.|
T Consensus 792 f~~R~FD~cIiDEASQI~lP~-----~LgPL--~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 792 FVNRQFDYCIIDEASQILLPL-----CLGPL--SFSNKFVLVGDHYQ 831 (1100)
T ss_pred hhccccCEEEEccccccccch-----hhhhh--hhcceEEEeccccc
Confidence 666789999999998774332 22223 34567777776543
No 158
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=96.92 E-value=0.0047 Score=69.08 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=78.3
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch----hhHHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL----ENWERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~~~~p 242 (520)
..++-|+.|--.|. .|.|.-..||=|||++|... .++. .-.++++-||+++.-| ..|...+-+|+
T Consensus 85 r~ydVQliGgl~Lh-------~G~IAEM~TGEGKTL~atlp-ayln--AL~GkgVhVVTvNdYLA~RDae~m~~vy~~L- 153 (939)
T PRK12902 85 RHFDVQLIGGMVLH-------EGQIAEMKTGEGKTLVATLP-SYLN--ALTGKGVHVVTVNDYLARRDAEWMGQVHRFL- 153 (939)
T ss_pred CcchhHHHhhhhhc-------CCceeeecCCCChhHHHHHH-HHHH--hhcCCCeEEEeCCHHHHHhHHHHHHHHHHHh-
Confidence 45567888775553 46699999999999975433 3332 2356678888886655 34999999998
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhH-----hhhhccccchHHHHhhcCccEEEEeCccccC
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLF-----ERHSVQQKDDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l-----~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
++.|.+..+.......+. .. ..+|+.+|...| +.+.... ........+.++||||+..+.
T Consensus 154 GLtvg~i~~~~~~~err~-aY--------~~DItYgTn~e~gFDYLRDnm~~~---~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 154 GLSVGLIQQDMSPEERKK-NY--------ACDITYATNSELGFDYLRDNMATD---ISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CCeEEEECCCCChHHHHH-hc--------CCCeEEecCCcccccchhhhhccc---ccccccCccceEEEeccccee
Confidence 677766654332221111 11 358888877666 3322211 111234578899999999873
No 159
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.91 E-value=0.00047 Score=67.41 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=89.3
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHH-HHHHHHHHHhCCCCCCEEEEeCCcc----hhhHHHHHHHhcCC
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQA-ITYLMLLKHLNNDPGPHLIVCPASV----LENWERELKKWCPS 243 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~a-ia~l~~l~~~~~~~~~~LIV~P~sl----l~~W~~E~~~~~p~ 243 (520)
-|.|.++|--.+ .| +..+.-...|+|||-.- |-.+..+ ......--.+|++|..- .+|-..++.++..
T Consensus 109 SPiQeesIPiaL----tG-rdiLaRaKNGTGKT~a~~IP~Leki-d~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~- 181 (459)
T KOG0326|consen 109 SPIQEESIPIAL----TG-RDILARAKNGTGKTAAYCIPVLEKI-DPKKNVIQAIILVPTRELALQTSQVCKELSKHLG- 181 (459)
T ss_pred CCccccccceee----cc-hhhhhhccCCCCCccceechhhhhc-CccccceeEEEEeecchhhHHHHHHHHHHhcccC-
Confidence 467777775554 23 34333357899999431 1112111 11222334699999543 4678889999884
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch-HHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS-YRWK 322 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s-~~~~ 322 (520)
+.+++..|...-+.. + .......+++|.|++.+.....+ ..-.-.....+|+|||..+....- ....
T Consensus 182 i~vmvttGGT~lrDD--I-----~Rl~~~VH~~vgTPGRIlDL~~K-----gVa~ls~c~~lV~DEADKlLs~~F~~~~e 249 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDD--I-----MRLNQTVHLVVGTPGRILDLAKK-----GVADLSDCVILVMDEADKLLSVDFQPIVE 249 (459)
T ss_pred eEEEEecCCcccccc--e-----eeecCceEEEEcCChhHHHHHhc-----ccccchhceEEEechhhhhhchhhhhHHH
Confidence 777777665322110 0 11223679999999998775421 111223467899999999865321 1222
Q ss_pred HHHHHhhhcCcEEEEeccC
Q 039292 323 NLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 323 ~l~~l~~~~~~rl~LTgTP 341 (520)
.+..+..+.+..++.|||-
T Consensus 250 ~li~~lP~~rQillySATF 268 (459)
T KOG0326|consen 250 KLISFLPKERQILLYSATF 268 (459)
T ss_pred HHHHhCCccceeeEEeccc
Confidence 3333344777888899984
No 160
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.90 E-value=0.0085 Score=67.29 Aligned_cols=84 Identities=13% Similarity=0.102 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHHHHhcC----CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchh-h-HHHHHH--
Q 039292 167 VLKPYQLVGVNFLLLLYRKG----IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLE-N-WERELK-- 238 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~----~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~-~-W~~E~~-- 238 (520)
.-|+-|..-...+......+ .+-+++=..||+|||+--+.-+... .....++++|-+.+..|. | +.+++-
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~--A~~~~k~vVIST~T~~LQeQL~~kDlP~l 102 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPI--ARAEKKKLVISTATVALQEQLVSKDLPLL 102 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHH--HHHcCCeEEEEcCCHHHHHHHHhhhhhHH
Confidence 57899999888887776652 1335666799999997543322222 223456666666654443 3 555543
Q ss_pred -HhcC-CCeEEEecCC
Q 039292 239 -KWCP-SFSVLQYHGA 252 (520)
Q Consensus 239 -~~~p-~~~v~~~~g~ 252 (520)
+.++ .+++.+..|.
T Consensus 103 ~~~l~~~~~~~llKGr 118 (697)
T PRK11747 103 LKISGLDFKFTLAKGR 118 (697)
T ss_pred HHHcCCCceEEEEcCc
Confidence 3332 3445544443
No 161
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=96.87 E-value=0.0077 Score=67.39 Aligned_cols=124 Identities=17% Similarity=0.160 Sum_probs=75.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch----hhHHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL----ENWERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~~~~p 242 (520)
..++-|+.|.-.|. .|.|.-..||-|||+++...+ ++.. -.++++-||+++.-| ..|...+-+|+
T Consensus 76 r~ydvQlig~l~L~-------~G~IaEm~TGEGKTL~a~l~a-yl~a--L~G~~VhVvT~NdyLA~RD~e~m~pvy~~L- 144 (870)
T CHL00122 76 RHFDVQLIGGLVLN-------DGKIAEMKTGEGKTLVATLPA-YLNA--LTGKGVHIVTVNDYLAKRDQEWMGQIYRFL- 144 (870)
T ss_pred CCCchHhhhhHhhc-------CCccccccCCCCchHHHHHHH-HHHH--hcCCceEEEeCCHHHHHHHHHHHHHHHHHc-
Confidence 46677888865443 356888999999999754333 3322 246778888887655 34999999998
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhH-----hhhhccccchHHHHhhcCccEEEEeCcccc
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLF-----ERHSVQQKDDRKILKRWRWSCVLMDEAHAL 313 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l-----~~~~~~~~~~~~~l~~~~~~~vIiDEaH~i 313 (520)
++.+.+..+......++. .. ..+|+-+|-..| +.+... .........+.++|+||+..+
T Consensus 145 GLsvg~i~~~~~~~err~-aY--------~~DItYgTn~e~gFDyLRDnm~~---~~~~~v~r~~~faIVDEvDSi 208 (870)
T CHL00122 145 GLTVGLIQEGMSSEERKK-NY--------LKDITYVTNSELGFDYLRDNMAL---SLSDVVQRPFNYCIIDEVDSI 208 (870)
T ss_pred CCceeeeCCCCChHHHHH-hc--------CCCCEecCCccccccchhhccCc---ChHHhhccccceeeeecchhh
Confidence 466665544332221111 10 246666665433 332211 112223456889999999977
No 162
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=96.84 E-value=0.0011 Score=66.29 Aligned_cols=77 Identities=16% Similarity=0.113 Sum_probs=43.9
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhh-hhcCCChhHHHHHHHHHhhhccCcccccccCCChH
Q 039292 407 IQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLAT-IVGVLPQRQISNYFVQFRKIANHPLLVRRIYSDDD 483 (520)
Q Consensus 407 ~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~LRkicnHP~L~~~~~~~~~ 483 (520)
.++.+.++|+..|+++|+.++......+.............. .........+-.++.+|+.||+||+|+-.+|.+..
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ 81 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQ 81 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccc
Confidence 368899999999999999999876655545443333222111 11112234667789999999999999988776543
No 163
>PRK04296 thymidine kinase; Provisional
Probab=96.81 E-value=0.0056 Score=57.30 Aligned_cols=34 Identities=15% Similarity=0.175 Sum_probs=25.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
.++..+||+|||..++.++..+.. ...+++|+-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~---~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE---RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH---cCCeEEEEec
Confidence 367888999999999988876643 3567777755
No 164
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.81 E-value=0.017 Score=60.32 Aligned_cols=72 Identities=24% Similarity=0.265 Sum_probs=45.7
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc--hhhHHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV--LENWERELK 238 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl--l~~W~~E~~ 238 (520)
..++|-|..-..-+......+ +.|+|-.+.|+|||+.-++++..........-.-||-|...+ +..-..|++
T Consensus 15 ~~iYPEQ~~YM~elKrsLDak-Gh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 15 DYIYPEQYEYMRELKRSLDAK-GHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred cccCHHHHHHHHHHHHhhccC-CcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 367888876444443333334 458999999999999999988655443443445577777433 444444443
No 165
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.74 E-value=0.0068 Score=66.93 Aligned_cols=87 Identities=18% Similarity=0.195 Sum_probs=56.8
Q ss_pred CCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHH----HHHHHHH---------hC--------C---
Q 039292 161 DSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAIT----YLMLLKH---------LN--------N--- 216 (520)
Q Consensus 161 ~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia----~l~~l~~---------~~--------~--- 216 (520)
+-.|.-+.+|-|+.-...++.......+ |+|-.++|+|||+..|. +...+.. .. .
T Consensus 15 ~V~fP~qpY~~Q~a~M~rvl~~L~~~q~-~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~ 93 (945)
T KOG1132|consen 15 PVEFPFQPYPTQLAFMTRVLSCLDRKQN-GLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSG 93 (945)
T ss_pred eeeccCCcchHHHHHHHHHHHHHHHhhh-hhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCC
Confidence 3445567799999988888887777765 49999999999975433 3322220 00 0
Q ss_pred --------------CCCCEEEEeCCc--chhhHHHHHHHhcCCCeEEE
Q 039292 217 --------------DPGPHLIVCPAS--VLENWERELKKWCPSFSVLQ 248 (520)
Q Consensus 217 --------------~~~~~LIV~P~s--ll~~W~~E~~~~~p~~~v~~ 248 (520)
-.-|.++.+... -+.|-.+|+.+..-..+..+
T Consensus 94 g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtV 141 (945)
T KOG1132|consen 94 GEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTV 141 (945)
T ss_pred CCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEE
Confidence 013557777743 48889999998764444443
No 166
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.70 E-value=0.0027 Score=60.37 Aligned_cols=137 Identities=17% Similarity=0.217 Sum_probs=85.6
Q ss_pred eEEeCCCCCCHHHH-HHHHHHHHHHhCCCCC--CEEEEeCCc-chhhHHHH---HHHhcCCCeEEEecCCCchhhhHHHH
Q 039292 190 AILADEMGLGKTIQ-AITYLMLLKHLNNDPG--PHLIVCPAS-VLENWERE---LKKWCPSFSVLQYHGAGRTAYSRELS 262 (520)
Q Consensus 190 ~ILademGlGKTi~-aia~l~~l~~~~~~~~--~~LIV~P~s-ll~~W~~E---~~~~~p~~~v~~~~g~~~~~~~~~~~ 262 (520)
++.....|+|||.. +++.+..+ ....| .+||+|.+. +..|-.+| |.++.|+.++-++.|.-.-.....+.
T Consensus 82 vlcqaksgmgktavfvl~tlqqi---epv~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~l 158 (387)
T KOG0329|consen 82 VLCQAKSGMGKTAVFVLATLQQI---EPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELL 158 (387)
T ss_pred hheecccCCCceeeeehhhhhhc---CCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHH
Confidence 46677899999954 34434333 33333 568888864 44566666 55678999999888775444333332
Q ss_pred HHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhh---hcCcEEEEec
Q 039292 263 SLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVAR---NANQRLMLTG 339 (520)
Q Consensus 263 ~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~---~~~~rl~LTg 339 (520)
.. -.+|++.|++.+.... ....+.-.+....|+|||..+.. .-.+.+-+..+.+ ..+..+.+|+
T Consensus 159 k~-------~PhivVgTPGrilALv-----r~k~l~lk~vkhFvlDEcdkmle-~lDMrRDvQEifr~tp~~KQvmmfsa 225 (387)
T KOG0329|consen 159 KN-------CPHIVVGTPGRILALV-----RNRSLNLKNVKHFVLDECDKMLE-QLDMRRDVQEIFRMTPHEKQVMMFSA 225 (387)
T ss_pred hC-------CCeEEEcCcHHHHHHH-----HhccCchhhcceeehhhHHHHHH-HHHHHHHHHHHhhcCcccceeeeeee
Confidence 21 3589999999887654 23344555677899999997642 2234444444432 4455688888
Q ss_pred cCC
Q 039292 340 TPL 342 (520)
Q Consensus 340 TPi 342 (520)
|--
T Consensus 226 tls 228 (387)
T KOG0329|consen 226 TLS 228 (387)
T ss_pred ecc
Confidence 864
No 167
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.68 E-value=0.025 Score=59.99 Aligned_cols=42 Identities=24% Similarity=0.188 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHhcCC-C-ceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKGI-A-GAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~~-~-g~ILademGlGKTi~aia~l~~l~ 212 (520)
.|...+..|......+. + ..|+..+.|.|||..|..++..+.
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45555555554444432 2 369999999999999999887764
No 168
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.67 E-value=0.0094 Score=56.80 Aligned_cols=72 Identities=19% Similarity=0.286 Sum_probs=54.2
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhc
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWC 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 241 (520)
-.|||-|.+.+..|... ..+ .+.++-.-||-|||-+.+=+++.+.. ...+=+-+|||..++.+-..-+..-+
T Consensus 22 iliR~~Q~~ia~~mi~~-~~~-~n~v~QlnMGeGKTsVI~Pmla~~LA--dg~~LvrviVpk~Ll~q~~~~L~~~l 93 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISP-PSG-KNSVMQLNMGEGKTSVIVPMLALALA--DGSRLVRVIVPKALLEQMRQMLRSRL 93 (229)
T ss_pred ceeeHHHHHHHHHHhCC-CCC-CCeEeeecccCCccchHHHHHHHHHc--CCCcEEEEEcCHHHHHHHHHHHHHHH
Confidence 37999999999999853 333 45689999999999777776665542 33455778999999998877776544
No 169
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.66 E-value=0.024 Score=64.37 Aligned_cols=140 Identities=19% Similarity=0.240 Sum_probs=79.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch---hhHHHHHHHhcCC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL---ENWERELKKWCPS 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll---~~W~~E~~~~~p~ 243 (520)
.-++-|+.|--.|. .|.|.=..||=|||++|...+ ++.. -...+-++|-+-..|. ..|...+-.|+ +
T Consensus 169 ~~yDVQliGgivLh-------~G~IAEM~TGEGKTLvAtlp~-yLnA-L~GkgVHvVTVNDYLA~RDaewmgply~fL-G 238 (1112)
T PRK12901 169 VHYDVQLIGGVVLH-------QGKIAEMATGEGKTLVATLPV-YLNA-LTGNGVHVVTVNDYLAKRDSEWMGPLYEFH-G 238 (1112)
T ss_pred cccchHHhhhhhhc-------CCceeeecCCCCchhHHHHHH-HHHH-HcCCCcEEEEechhhhhccHHHHHHHHHHh-C
Confidence 44556777765553 456889999999999875433 2222 1233444444444443 45999999998 6
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHh-----hhhccccchHHHHhhcCccEEEEeCccccCCcch
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFE-----RHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~-----~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
+.|.+..........++... .++|.-.|-.-|. ..... ....+....+.+.||||+..+.
T Consensus 239 Lsvg~i~~~~~~~~~rr~aY--------~~DItYgTn~EfGFDYLRDnm~~---~~~~~vqR~~~fAIVDEvDSIL---- 303 (1112)
T PRK12901 239 LSVDCIDKHQPNSEARRKAY--------NADITYGTNNEFGFDYLRDNMAH---SPEDLVQRKHNYAIVDEVDSVL---- 303 (1112)
T ss_pred CceeecCCCCCCHHHHHHhC--------CCcceecCCCccccccchhcccc---chHhhhCcCCceeEeechhhhh----
Confidence 67666543221111111111 3466666654443 22211 1223345578999999998762
Q ss_pred HHHHHHHHHhhhcCcEEEEecc
Q 039292 319 YRWKNLMSVARNANQRLMLTGT 340 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgT 340 (520)
...++.-+++||.
T Consensus 304 ---------IDEARTPLIISGp 316 (1112)
T PRK12901 304 ---------IDDARTPLIISGP 316 (1112)
T ss_pred ---------hccccCcEEEeCC
Confidence 2245556888885
No 170
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.63 E-value=0.0022 Score=67.68 Aligned_cols=136 Identities=18% Similarity=0.188 Sum_probs=80.0
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHH-HHHHHHHhC----CCCCCEEEEeCC-cchhhHHHHHHHh
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAIT-YLMLLKHLN----NDPGPHLIVCPA-SVLENWERELKKW 240 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia-~l~~l~~~~----~~~~~~LIV~P~-sll~~W~~E~~~~ 240 (520)
.-.|.|..++-.++. + +.++-+..+|+|||+.-+. ++..+.... ..+-..+|+.|. .+..|-.+|+.++
T Consensus 158 ~Pt~iq~~aipvfl~----~-r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~ 232 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLE----K-RDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKY 232 (593)
T ss_pred CCCcccchhhhhhhc----c-cceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhc
Confidence 345789999888873 3 4568899999999864322 223333322 334467999995 5678899999988
Q ss_pred c--CC--CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc
Q 039292 241 C--PS--FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK 316 (520)
Q Consensus 241 ~--p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~ 316 (520)
. +. +.+..+........ ...... ...+++++.|+-.+........ ..+.-....++|+|||.++.++
T Consensus 233 ~~~~~t~~~a~~~~~~~~~~q--k~a~~~----~~k~dili~TP~ri~~~~~~~~---~~idl~~V~~lV~dEaD~lfe~ 303 (593)
T KOG0344|consen 233 SIDEGTSLRAAQFSKPAYPSQ--KPAFLS----DEKYDILISTPMRIVGLLGLGK---LNIDLSKVEWLVVDEADLLFEP 303 (593)
T ss_pred CCCCCCchhhhhcccccchhh--ccchhH----HHHHHHHhcCHHHHHHHhcCCC---ccchhheeeeEeechHHhhhCh
Confidence 7 32 22222222211100 000000 0136899999988766443211 0122234567999999999887
No 171
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.62 E-value=0.017 Score=63.41 Aligned_cols=146 Identities=18% Similarity=0.165 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCC--CCCEEEEeCCcchhh-HHHHHHHhcCCCeE
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNND--PGPHLIVCPASVLEN-WERELKKWCPSFSV 246 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~--~~~~LIV~P~sll~~-W~~E~~~~~p~~~v 246 (520)
+.|+.++...+. . +-++|...+|+|||.++..++..+...... ..++++++|+.-... ..+-+......+..
T Consensus 148 ~~Qk~A~~~al~---~--~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~ 222 (586)
T TIGR01447 148 NWQKVAVALALK---S--NFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA 222 (586)
T ss_pred HHHHHHHHHHhh---C--CeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc
Confidence 799999877763 2 236899999999999988888776543322 246899999765443 22223222111110
Q ss_pred EEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccc-hHHHHhhcCccEEEEeCccccCCcchHHHHHHH
Q 039292 247 LQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKD-DRKILKRWRWSCVLMDEAHALKDKNSYRWKNLM 325 (520)
Q Consensus 247 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~-~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~ 325 (520)
. . . ... ...+-..|...+......... ....-....+++||||||-++- .....+.+.
T Consensus 223 ~-----~-~-----~~~--------~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd--~~l~~~ll~ 281 (586)
T TIGR01447 223 A-----E-A-----LIA--------ALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD--LPLMAKLLK 281 (586)
T ss_pred c-----h-h-----hhh--------ccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC--HHHHHHHHH
Confidence 0 0 0 000 001111222222211000000 0000112368999999999983 233444444
Q ss_pred HHhhhcCcEEEEeccCCC
Q 039292 326 SVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 326 ~l~~~~~~rl~LTgTPi~ 343 (520)
.+ ...-|++|.|=|-|
T Consensus 282 al--~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 282 AL--PPNTKLILLGDKNQ 297 (586)
T ss_pred hc--CCCCEEEEECChhh
Confidence 44 55678999998764
No 172
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.61 E-value=0.015 Score=50.04 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=30.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWER 235 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~ 235 (520)
.++|..++|+|||..+..++..+.. ....++++.+......|..
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGP---PGGGVIYIDGEDILEEVLD 47 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCC---CCCCEEEECCEEccccCHH
Confidence 4688999999999999888765532 1136777777665555433
No 173
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.59 E-value=0.046 Score=47.43 Aligned_cols=39 Identities=23% Similarity=0.202 Sum_probs=25.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV 229 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl 229 (520)
+.+++..++|+|||..+-.++..+. ....+++++.....
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~---~~~~~v~~~~~~~~ 58 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELF---RPGAPFLYLNASDL 58 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh---cCCCCeEEEehhhh
Confidence 4688999999999987777665553 22345555544333
No 174
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.56 E-value=0.03 Score=52.61 Aligned_cols=138 Identities=18% Similarity=0.181 Sum_probs=75.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGL 269 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~ 269 (520)
.+|...+|.|||.++.-++.++... +.++.+||--.-...=.++++.|+-.+.+-++.........
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~----------- 69 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA----------- 69 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH-----------
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH-----------
Confidence 4678899999999999888877542 66677777654444444555555433333322211110000
Q ss_pred CCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHH--HHHHHHHhhhcCcEEEEeccCCCCCHH
Q 039292 270 PPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYR--WKNLMSVARNANQRLMLTGTPLQNDLH 347 (520)
Q Consensus 270 ~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~--~~~l~~l~~~~~~rl~LTgTPi~n~~~ 347 (520)
+.+.. ....+...++++|+||-+-+.-+..... .+.+..........++|++|--+..+.
T Consensus 70 -----------~~~~~-------~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 70 -----------EIARE-------ALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp -----------HHHHH-------HHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred -----------HHHHH-------HHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHH
Confidence 00100 1223445568999999988765433321 222222222344567799998777777
Q ss_pred HHHHHHHHhCCC
Q 039292 348 ELWSLLEFMMPD 359 (520)
Q Consensus 348 el~~ll~fl~p~ 359 (520)
........+.+.
T Consensus 132 ~~~~~~~~~~~~ 143 (196)
T PF00448_consen 132 QALAFYEAFGID 143 (196)
T ss_dssp HHHHHHHHSSTC
T ss_pred HHHHHhhcccCc
Confidence 666666665544
No 175
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.53 E-value=0.0055 Score=61.37 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHH-HHHHHHHHHHhCCCCCCEEEEeCCcch-hh---HHHHHHHhcCCCe
Q 039292 171 YQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQ-AITYLMLLKHLNNDPGPHLIVCPASVL-EN---WERELKKWCPSFS 245 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~-aia~l~~l~~~~~~~~~~LIV~P~sll-~~---W~~E~~~~~p~~~ 245 (520)
.|..++--|+....++ .|-....|+|||.. +++++...-- ....--.+.++|..-+ .| ...|+-+|. .+.
T Consensus 116 IQe~aLPlll~~Pp~n---lIaQsqsGtGKTaaFvL~MLsrvd~-~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~it 190 (477)
T KOG0332|consen 116 IQETALPLLLAEPPQN---LIAQSQSGTGKTAAFVLTMLSRVDP-DVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELT 190 (477)
T ss_pred HHHhhcchhhcCCchh---hhhhhcCCCchhHHHHHHHHHhcCc-cccCCCceeeCchHHHHHHHHHHHHHhcCce-eee
Confidence 5666666555443333 35666899999953 3333332211 1111224667996543 34 334444554 222
Q ss_pred -EEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--hHHHH
Q 039292 246 -VLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN--SYRWK 322 (520)
Q Consensus 246 -v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~--s~~~~ 322 (520)
-+.+.|+... ... .-...|+|-|.+++..... ..+.+.-....++|+|||..+-+.. ...+.
T Consensus 191 a~yair~sk~~-rG~----------~i~eqIviGTPGtv~Dlm~----klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~ 255 (477)
T KOG0332|consen 191 ASYAIRGSKAK-RGN----------KLTEQIVIGTPGTVLDLML----KLKCIDLEKIKVFVLDEADVMIDTQGFQDQSI 255 (477)
T ss_pred EEEEecCcccc-cCC----------cchhheeeCCCccHHHHHH----HHHhhChhhceEEEecchhhhhhcccccccch
Confidence 2334444111 111 1124899999999987331 1133344467899999999886644 22222
Q ss_pred HHHHHhhhcCcEEEEeccCC
Q 039292 323 NLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 323 ~l~~l~~~~~~rl~LTgTPi 342 (520)
.++....+....++.|+|-.
T Consensus 256 rI~~~lP~~~QllLFSATf~ 275 (477)
T KOG0332|consen 256 RIMRSLPRNQQLLLFSATFV 275 (477)
T ss_pred hhhhhcCCcceEEeeechhH
Confidence 33333224667889999864
No 176
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.50 E-value=0.025 Score=55.66 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=20.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.+||..++|+|||..|-++...+..
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999888766644
No 177
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.037 Score=57.46 Aligned_cols=134 Identities=11% Similarity=0.126 Sum_probs=73.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhC-CCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLN-NDPGPHLIVCPASVLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAG 268 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~-~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~ 268 (520)
+++...+|.|||.++.-++..+.... ..+.++.+|+=..-...=...+..|+..+.+-+.
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~------------------- 237 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK------------------- 237 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceE-------------------
Confidence 56888999999999877776654322 2345566665433211111114444422222111
Q ss_pred CCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhh----hcCcEEEEeccCCCC
Q 039292 269 LPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVAR----NANQRLMLTGTPLQN 344 (520)
Q Consensus 269 ~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~----~~~~rl~LTgTPi~n 344 (520)
++.++..+.. ... .....++||||++.+....... ...+..+.. .....++|+||-=++
T Consensus 238 -------~~~~~~~l~~-------~L~--~~~~~DlVLIDTaGr~~~~~~~-l~el~~~l~~~~~~~e~~LVlsat~~~~ 300 (388)
T PRK12723 238 -------AIESFKDLKE-------EIT--QSKDFDLVLVDTIGKSPKDFMK-LAEMKELLNACGRDAEFHLAVSSTTKTS 300 (388)
T ss_pred -------eeCcHHHHHH-------HHH--HhCCCCEEEEcCCCCCccCHHH-HHHHHHHHHhcCCCCeEEEEEcCCCCHH
Confidence 1112333322 111 1246899999999988543222 222222211 123568899999888
Q ss_pred CHHHHHHHHHHhCCC
Q 039292 345 DLHELWSLLEFMMPD 359 (520)
Q Consensus 345 ~~~el~~ll~fl~p~ 359 (520)
.+.+.+.-+..+.+.
T Consensus 301 ~~~~~~~~~~~~~~~ 315 (388)
T PRK12723 301 DVKEIFHQFSPFSYK 315 (388)
T ss_pred HHHHHHHHhcCCCCC
Confidence 888888777665544
No 178
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.44 E-value=0.032 Score=62.09 Aligned_cols=75 Identities=19% Similarity=0.187 Sum_probs=58.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCCCeEE
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPSFSVL 247 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v~ 247 (520)
.-.|-.++..|......+.+..+|..-+|+|||+++..++.. ..+|+|||+|... ..||..+|..|+|+..|.
T Consensus 11 ~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a~~~~~------~~~p~Lvi~~n~~~A~ql~~el~~f~p~~~V~ 84 (655)
T TIGR00631 11 AGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMANVIAQ------VNRPTLVIAHNKTLAAQLYNEFKEFFPENAVE 84 (655)
T ss_pred ChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHHHHHHH------hCCCEEEEECCHHHHHHHHHHHHHhCCCCeEE
Confidence 458889999998777666434467788999999998776643 3569999999755 578999999999986566
Q ss_pred Ee
Q 039292 248 QY 249 (520)
Q Consensus 248 ~~ 249 (520)
.|
T Consensus 85 ~f 86 (655)
T TIGR00631 85 YF 86 (655)
T ss_pred EE
Confidence 55
No 179
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=96.38 E-value=0.015 Score=64.47 Aligned_cols=130 Identities=21% Similarity=0.270 Sum_probs=79.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC-CcchhhHHHHHHHhc-CCCeEEEecCCCchhhhHHHHHHhhc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP-ASVLENWERELKKWC-PSFSVLQYHGAGRTAYSRELSSLAKA 267 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P-~sll~~W~~E~~~~~-p~~~v~~~~g~~~~~~~~~~~~~~~~ 267 (520)
-++-.+||+|||...+-++.... ......+|+|.- .+++.+-...|.... +++. .|.........
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l--~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv--~Y~d~~~~~i~--------- 118 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDAL--KNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFV--NYLDSDDYIID--------- 118 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhc--cCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcce--eeecccccccc---------
Confidence 36778999999987776664331 245677888866 566677777776543 2332 33333211110
Q ss_pred CCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC--------cchHHHHHHHHHhhhcCcEEEEec
Q 039292 268 GLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD--------KNSYRWKNLMSVARNANQRLMLTG 339 (520)
Q Consensus 268 ~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn--------~~s~~~~~l~~l~~~~~~rl~LTg 339 (520)
...++-+++..+.+-+.. ... -.+||+|||||+-.+-+ ........+..+..++++.|++-|
T Consensus 119 --~~~~~rLivqIdSL~R~~------~~~--l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA 188 (824)
T PF02399_consen 119 --GRPYDRLIVQIDSLHRLD------GSL--LDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDA 188 (824)
T ss_pred --ccccCeEEEEehhhhhcc------ccc--ccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecC
Confidence 013578888888886631 111 12499999999864422 122344556666668899999999
Q ss_pred cCC
Q 039292 340 TPL 342 (520)
Q Consensus 340 TPi 342 (520)
|--
T Consensus 189 ~ln 191 (824)
T PF02399_consen 189 DLN 191 (824)
T ss_pred CCC
Confidence 753
No 180
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.38 E-value=0.015 Score=64.06 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=42.6
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC-CCCCCEEEEeCCcchhh
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN-NDPGPHLIVCPASVLEN 232 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~-~~~~~~LIV~P~sll~~ 232 (520)
-+.|+.++.-.+. . +-+|+...+|+|||.++..++..+.... ....++++++|+.-...
T Consensus 154 ~d~Qk~Av~~a~~---~--~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~ 213 (615)
T PRK10875 154 VDWQKVAAAVALT---R--RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAA 213 (615)
T ss_pred CHHHHHHHHHHhc---C--CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHH
Confidence 4899999976652 2 2368999999999999888887765432 22346888899765544
No 181
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.29 E-value=0.024 Score=57.10 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=37.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
--+|..++..|+. ....=+.|...-|+|||+-|+|....--......++++|-=|.
T Consensus 230 n~eQ~~ALdlLld---~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~ 285 (436)
T COG1875 230 NAEQRVALDLLLD---DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPT 285 (436)
T ss_pred cHHHHHHHHHhcC---CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCC
Confidence 3489999987763 3333367888999999998887754333334455566665553
No 182
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=96.22 E-value=0.03 Score=63.33 Aligned_cols=141 Identities=11% Similarity=0.102 Sum_probs=79.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc--c--hhhHHHHHHHhcCCCeEEEec--CCCchhhhHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS--V--LENWERELKKWCPSFSVLQYH--GAGRTAYSRELS 262 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s--l--l~~W~~E~~~~~p~~~v~~~~--g~~~~~~~~~~~ 262 (520)
-+++..++|.|||.|+-.|+..-....+...++++--|.. . +.+|...=.-+.++ ..+-|. ......
T Consensus 190 VvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g-~~VGYqvrl~~~~s------ 262 (924)
T KOG0920|consen 190 VVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG-EEVGYQVRLESKRS------ 262 (924)
T ss_pred eEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC-CeeeEEEeeecccC------
Confidence 4789999999999999999876554455444444444532 2 33433322222222 222221 111111
Q ss_pred HHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHH-HHHhh--hcCcEEEEec
Q 039292 263 SLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNL-MSVAR--NANQRLMLTG 339 (520)
Q Consensus 263 ~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l-~~l~~--~~~~rl~LTg 339 (520)
....++++|++.+.+.... .-.-.....||+||+|- ++-++...-.+ +.+.. ..-+.|+|||
T Consensus 263 --------~~t~L~fcTtGvLLr~L~~------~~~l~~vthiivDEVHE-R~i~~DflLi~lk~lL~~~p~LkvILMSA 327 (924)
T KOG0920|consen 263 --------RETRLLFCTTGVLLRRLQS------DPTLSGVTHIIVDEVHE-RSINTDFLLILLKDLLPRNPDLKVILMSA 327 (924)
T ss_pred --------CceeEEEecHHHHHHHhcc------CcccccCceeeeeeEEE-ccCCcccHHHHHHHHhhhCCCceEEEeee
Confidence 1248899999999874432 11223577899999995 23333332222 22211 3445789999
Q ss_pred cCCCCCHHHHHH
Q 039292 340 TPLQNDLHELWS 351 (520)
Q Consensus 340 TPi~n~~~el~~ 351 (520)
|--...+.++|.
T Consensus 328 T~dae~fs~YF~ 339 (924)
T KOG0920|consen 328 TLDAELFSDYFG 339 (924)
T ss_pred ecchHHHHHHhC
Confidence 987555556555
No 183
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=96.22 E-value=0.049 Score=61.04 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=72.3
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch----hhHHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL----ENWERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~~~~p 242 (520)
..++-|+.|.-.|. .|.|.-..||=|||++|...+ ++.. -.++++=||+.+.-| ..|...+-.|+
T Consensus 78 r~ydVQliGglvLh-------~G~IAEMkTGEGKTLvAtLpa-yLnA--L~GkgVhVVTvNdYLA~RDae~mg~vy~fL- 146 (925)
T PRK12903 78 RPYDVQIIGGIILD-------LGSVAEMKTGEGKTITSIAPV-YLNA--LTGKGVIVSTVNEYLAERDAEEMGKVFNFL- 146 (925)
T ss_pred CcCchHHHHHHHHh-------cCCeeeecCCCCccHHHHHHH-HHHH--hcCCceEEEecchhhhhhhHHHHHHHHHHh-
Confidence 45667888875543 355888899999999765332 3322 244556666665444 34999999998
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCcccc
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHAL 313 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~i 313 (520)
++.|.+..........+. . . ..+|+-+|...|..+..... .....+....+.++|+||+..+
T Consensus 147 GLsvG~i~~~~~~~~rr~-a--Y------~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSI 210 (925)
T PRK12903 147 GLSVGINKANMDPNLKRE-A--Y------ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSI 210 (925)
T ss_pred CCceeeeCCCCChHHHHH-h--c------cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhe
Confidence 566655443221111111 0 0 24777776655433211100 0122334456889999999876
No 184
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.21 E-value=0.043 Score=53.98 Aligned_cols=43 Identities=19% Similarity=0.135 Sum_probs=29.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
.+.+..++..+......+.+-++|..+.|+|||..+-.++..+
T Consensus 25 ~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 25 SKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 3455667777765555443236789999999998877766543
No 185
>PRK14974 cell division protein FtsY; Provisional
Probab=96.15 E-value=0.092 Score=53.52 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=24.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+++...+|+|||.++..++..+.. .+.+++++..
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~---~g~~V~li~~ 176 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK---NGFSVVIAAG 176 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---cCCeEEEecC
Confidence 567889999999988888776643 3346666654
No 186
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.11 E-value=0.052 Score=60.31 Aligned_cols=43 Identities=21% Similarity=0.174 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcC-C-CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKG-I-AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~-~-~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.|...++.|......+ . +..||....|+|||..+..|+..+..
T Consensus 20 GQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 20 GQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred CcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3555555555444443 1 24588999999999999998887743
No 187
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=96.11 E-value=0.05 Score=61.80 Aligned_cols=142 Identities=18% Similarity=0.231 Sum_probs=81.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch---hhHHHHHHHhcCC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL---ENWERELKKWCPS 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll---~~W~~E~~~~~p~ 243 (520)
.-++-|+.|--.|. .|-|-=..||=|||++|..-+ ++.. -...+-++|-|-..|. ..|..-+-.|+ +
T Consensus 138 ~~ydVQLiGgivLh-------~G~IAEM~TGEGKTLvatlp~-yLnA-L~G~gVHvVTvNDYLA~RDaewm~p~y~fl-G 207 (1025)
T PRK12900 138 VPYDVQLIGGIVLH-------SGKISEMATGEGKTLVSTLPT-FLNA-LTGRGVHVVTVNDYLAQRDKEWMNPVFEFH-G 207 (1025)
T ss_pred cccchHHhhhHHhh-------cCCccccCCCCCcchHhHHHH-HHHH-HcCCCcEEEeechHhhhhhHHHHHHHHHHh-C
Confidence 45567888876664 355888899999999865332 2222 2233445555554443 44999999998 6
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccCCcchHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALKDKNSYRW 321 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~ 321 (520)
+.|.+.........++. . . ..+|+-.|-.-|..+..... .....+....+.+.||||+..+.
T Consensus 208 LtVg~i~~~~~~~~Rr~-a--Y------~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL------- 271 (1025)
T PRK12900 208 LSVGVILNTMRPEERRE-Q--Y------LCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL------- 271 (1025)
T ss_pred CeeeeeCCCCCHHHHHH-h--C------CCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh-------
Confidence 66665543322211111 1 0 34676666544432211100 02223445678999999998762
Q ss_pred HHHHHHhhhcCcEEEEecc
Q 039292 322 KNLMSVARNANQRLMLTGT 340 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgT 340 (520)
...++.-+++||.
T Consensus 272 ------IDeARTPLIISgp 284 (1025)
T PRK12900 272 ------IDEARTPLIISGP 284 (1025)
T ss_pred ------hccccCceEEeCC
Confidence 2245666888884
No 188
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=96.10 E-value=0.084 Score=60.41 Aligned_cols=76 Identities=13% Similarity=0.113 Sum_probs=47.4
Q ss_pred ccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccCCcchHHHHHHHHH----hhhcCcEEEEeccCCCCCH
Q 039292 273 FNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSV----ARNANQRLMLTGTPLQNDL 346 (520)
Q Consensus 273 ~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l----~~~~~~rl~LTgTPi~n~~ 346 (520)
..|+|+|.+.+.......+ .....+....-..|||||+|.+-. .....+..+ ..-..+.++||||--..-.
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~---~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~ 639 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEP---EDLPALLRLVQLAGLLGSRVLLSSATLPPALV 639 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCH---HHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH
Confidence 4788888888876442212 223334455678999999998843 333333332 2245778999999876655
Q ss_pred HHHHH
Q 039292 347 HELWS 351 (520)
Q Consensus 347 ~el~~ 351 (520)
..|+.
T Consensus 640 ~~L~~ 644 (1110)
T TIGR02562 640 KTLFR 644 (1110)
T ss_pred HHHHH
Confidence 55544
No 189
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=96.10 E-value=0.019 Score=59.49 Aligned_cols=52 Identities=15% Similarity=0.332 Sum_probs=34.2
Q ss_pred CccEEEEeCccccCCcchHHHHHHHHHhh-----h-cCcEEEEeccCCCCCHHHHHHHHHHh
Q 039292 301 RWSCVLMDEAHALKDKNSYRWKNLMSVAR-----N-ANQRLMLTGTPLQNDLHELWSLLEFM 356 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s~~~~~l~~l~~-----~-~~~rl~LTgTPi~n~~~el~~ll~fl 356 (520)
.|++||+||||. .|..+..++.+.. + --..+++|+|-.-.++..+|+-.-++
T Consensus 159 ~y~viiLDeahE----RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll 216 (699)
T KOG0925|consen 159 RYGVIILDEAHE----RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLL 216 (699)
T ss_pred cccEEEechhhh----hhHHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCee
Confidence 699999999994 3333344433321 2 23357899999888888887655444
No 190
>PF13245 AAA_19: Part of AAA domain
Probab=96.00 E-value=0.02 Score=45.03 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=33.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHh-CCCCCCEEEEeCCcchhh
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHL-NNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~-~~~~~~~LIV~P~sll~~ 232 (520)
-+++-..+|+|||.+++..+..+... .....++||++|+...-+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 35668999999999988888877631 222778999999865544
No 191
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.00 E-value=0.02 Score=62.49 Aligned_cols=174 Identities=17% Similarity=0.200 Sum_probs=104.8
Q ss_pred CCCCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHH-
Q 039292 159 DEDSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERE- 236 (520)
Q Consensus 159 ~~~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E- 236 (520)
..|..+.....|||++-...|... ....+.+.-..-+|||..++.++.+. ....++|+|+|.|+. ....|..+
T Consensus 8 ~~pG~w~~~~~Py~~eimd~~~~~---~v~~Vv~~k~aQ~GkT~~~~n~~g~~--i~~~P~~~l~v~Pt~~~a~~~~~~r 82 (557)
T PF05876_consen 8 AEPGPWRTDRTPYLREIMDALSDP---SVREVVVMKSAQVGKTELLLNWIGYS--IDQDPGPMLYVQPTDDAAKDFSKER 82 (557)
T ss_pred CCCCCCCCCCChhHHHHHHhcCCc---CccEEEEEEcchhhHhHHHHhhceEE--EEeCCCCEEEEEEcHHHHHHHHHHH
Confidence 345667778999999988877643 34567888889999999888777655 356779999999975 45556643
Q ss_pred HHHh---cCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcccc
Q 039292 237 LKKW---CPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHAL 313 (520)
Q Consensus 237 ~~~~---~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~i 313 (520)
|... .|.++-.+.....+........ .... +..+.+++...- ..|......++++||....
T Consensus 83 l~Pmi~~sp~l~~~~~~~~~~~~~~t~~~----k~f~-gg~l~~~ga~S~-----------~~l~s~~~r~~~~DEvD~~ 146 (557)
T PF05876_consen 83 LDPMIRASPVLRRKLSPSKSRDSGNTILY----KRFP-GGFLYLVGANSP-----------SNLRSRPARYLLLDEVDRY 146 (557)
T ss_pred HHHHHHhCHHHHHHhCchhhcccCCchhh----eecC-CCEEEEEeCCCC-----------cccccCCcCEEEEechhhc
Confidence 4332 3443322222111111000000 0111 235555554432 3467778999999999988
Q ss_pred C----CcchHHHHHHHHHhh-hcCcEEEEeccCCCCCHHHHHHHH
Q 039292 314 K----DKNSYRWKNLMSVAR-NANQRLMLTGTPLQNDLHELWSLL 353 (520)
Q Consensus 314 k----n~~s~~~~~l~~l~~-~~~~rl~LTgTPi~n~~~el~~ll 353 (520)
- +.......+...... ....++++..||.......++.++
T Consensus 147 p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 147 PDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred cccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 2 223333333333211 467899999999977554444443
No 192
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=95.96 E-value=0.043 Score=62.90 Aligned_cols=103 Identities=17% Similarity=0.299 Sum_probs=73.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-----hhHHHHHHHhcCCCeEEEecCCCchhhhHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-----ENWERELKKWCPSFSVLQYHGAGRTAYSRELS 262 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-----~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~ 262 (520)
..++++...|+|||+.|--.+ +. +...+++..|+|...+ .-|.+.|..- .+..++..+|...-.... +.
T Consensus 1160 d~v~vga~~gsgkt~~ae~a~--l~--~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~~lkl-~~ 1233 (1674)
T KOG0951|consen 1160 DNVLVGAPNGSGKTACAELAL--LR--PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSLDLKL-LQ 1233 (1674)
T ss_pred ceEEEecCCCCchhHHHHHHh--cC--CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCccccchHH-hh
Confidence 368999999999998764332 22 5567889999997665 4488888877 577777777765432211 11
Q ss_pred HHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC
Q 039292 263 SLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD 315 (520)
Q Consensus 263 ~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn 315 (520)
..+|+|.|++.+... . .....++.|+||.|.+.+
T Consensus 1234 ---------~~~vii~tpe~~d~l-------q---~iQ~v~l~i~d~lh~igg 1267 (1674)
T KOG0951|consen 1234 ---------KGQVIISTPEQWDLL-------Q---SIQQVDLFIVDELHLIGG 1267 (1674)
T ss_pred ---------hcceEEechhHHHHH-------h---hhhhcceEeeehhhhhcc
Confidence 359999999988652 1 334578999999999975
No 193
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.95 E-value=0.087 Score=54.18 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=34.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
..|. -|..++..|...+..+. ...|+..+.|+|||..|..++..+..
T Consensus 23 ~~l~-Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 23 TRLF-GHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred hhcc-CcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 3443 34556677777666653 24788999999999999999887754
No 194
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.92 E-value=0.14 Score=56.28 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=21.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~ 213 (520)
..|+....|+|||..+..|+..+..
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4588999999999999999887753
No 195
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.14 Score=56.29 Aligned_cols=41 Identities=22% Similarity=0.139 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~ 212 (520)
|...++.|......+. ...|+....|.|||..|.+++..+.
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3344444444333331 3459999999999999999887774
No 196
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=95.86 E-value=0.068 Score=59.87 Aligned_cols=156 Identities=17% Similarity=0.144 Sum_probs=89.3
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh-HHHHHHHhc--CCCeEEEecCCCchhhhHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN-WERELKKWC--PSFSVLQYHGAGRTAYSRELSSL 264 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~-W~~E~~~~~--p~~~v~~~~g~~~~~~~~~~~~~ 264 (520)
+.+|.+.+++.|||+.|--++... .-...+.+|.+.|--.+.+ =..++..+. -++.|-.|.|.......
T Consensus 241 ~nliys~Pts~gktlvaeilml~~--~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~------ 312 (1008)
T KOG0950|consen 241 KNLIYSLPTSAGKTLVAEILMLRE--VLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR------ 312 (1008)
T ss_pred cceEEeCCCccchHHHHHHHHHHH--HHHHhhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCc------
Confidence 468999999999998874443221 1223456788888544433 444555554 24566666655322211
Q ss_pred hhcCCCCCccEEEeehhhHhhhhccccchHHHHhhc---CccEEEEeCccccCCc--chHHHHHHHHHhh--h--cCcEE
Q 039292 265 AKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRW---RWSCVLMDEAHALKDK--NSYRWKNLMSVAR--N--ANQRL 335 (520)
Q Consensus 265 ~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~---~~~~vIiDEaH~ikn~--~s~~~~~l~~l~~--~--~~~rl 335 (520)
.....|.|+|.++-.... ...+... ..++||+||-|.+... ....-..+..+.. . .-+.+
T Consensus 313 -----~k~~sv~i~tiEkansli------n~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iI 381 (1008)
T KOG0950|consen 313 -----RKRESVAIATIEKANSLI------NSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQII 381 (1008)
T ss_pred -----ccceeeeeeehHhhHhHH------HHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEe
Confidence 123589999988765532 2223222 3578999999999542 2222222222222 1 12368
Q ss_pred EEeccCCCCCHHHHHHHHHHhCCCCCCC
Q 039292 336 MLTGTPLQNDLHELWSLLEFMMPDLFAT 363 (520)
Q Consensus 336 ~LTgTPi~n~~~el~~ll~fl~p~~~~~ 363 (520)
+||||-..|.+-.-|-- .|+.+..|..
T Consensus 382 GMSATi~N~~lL~~~L~-A~~y~t~fRP 408 (1008)
T KOG0950|consen 382 GMSATIPNNSLLQDWLD-AFVYTTRFRP 408 (1008)
T ss_pred eeecccCChHHHHHHhh-hhheecccCc
Confidence 99999877765443332 5665555544
No 197
>PRK06526 transposase; Provisional
Probab=95.78 E-value=0.12 Score=50.77 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=29.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
.+++|..++|+|||..+.++...+.. .+.+++++. ...|..++.
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~---~g~~v~f~t----~~~l~~~l~ 142 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQ---AGHRVLFAT----AAQWVARLA 142 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHH---CCCchhhhh----HHHHHHHHH
Confidence 56899999999999999998876643 233444432 234555554
No 198
>PLN03025 replication factor C subunit; Provisional
Probab=95.73 E-value=0.097 Score=53.16 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhc-CCCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRK-GIAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 172 Q~~gv~~l~~~~~~-~~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
|...+.++...... +....|+..++|+|||..+.+++..+.
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34444444433332 234579999999999999999887663
No 199
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.70 E-value=0.29 Score=47.62 Aligned_cols=63 Identities=19% Similarity=0.118 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHH---hcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 170 PYQLVGVNFLLLLY---RKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~---~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
+.|..++..+.... ..+.+|.+|...+|+|||..+.+++..+.. .+.+++++ .+..|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~i----t~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLII----TVADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEE----EHHHHHHHHHH
Confidence 45666665554322 223357899999999999999999887754 23455555 24556555543
No 200
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.67 E-value=0.2 Score=56.50 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=30.5
Q ss_pred CcHHHHHHHHHHHHHHhc--CCCceE-EeCCCCCCHHHHHHHHHHHHH
Q 039292 168 LKPYQLVGVNFLLLLYRK--GIAGAI-LADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~--~~~g~I-LademGlGKTi~aia~l~~l~ 212 (520)
=|.-|...|...+...-. +.+++| +...+|+|||.++-.++..+.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 366677777555543222 223454 899999999999988887664
No 201
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.14 Score=58.04 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhc-CCCce-EEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRK-GIAGA-ILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~-~~~g~-ILademGlGKTi~aia~l~~l~~ 213 (520)
|...+..|...... ....+ |+..++|+|||..|..|+..+..
T Consensus 21 Qe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 21 QSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred cHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 33444434333333 33444 79999999999999999877743
No 202
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.62 E-value=0.16 Score=48.44 Aligned_cols=25 Identities=20% Similarity=-0.012 Sum_probs=20.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~ 212 (520)
+..+|..+.|+|||..+.+++....
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~ 63 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAE 63 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999988776553
No 203
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=95.61 E-value=0.14 Score=57.14 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=60.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCCCe
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPSFS 245 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~ 245 (520)
.|.++|..++.-+......+.+..++..-+|+|||+.+.+++.. ..+|+|||+|.. ...+|..+|..|+|...
T Consensus 12 ~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~------~~r~vLIVt~~~~~A~~l~~dL~~~~~~~~ 85 (652)
T PRK05298 12 KPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIAR------LQRPTLVLAHNKTLAAQLYSEFKEFFPENA 85 (652)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHH------hCCCEEEEECCHHHHHHHHHHHHHhcCCCe
Confidence 68899999999998777655334578888999999987665532 246899999975 56789999999998866
Q ss_pred EEEe
Q 039292 246 VLQY 249 (520)
Q Consensus 246 v~~~ 249 (520)
|..|
T Consensus 86 v~~f 89 (652)
T PRK05298 86 VEYF 89 (652)
T ss_pred EEEe
Confidence 6665
No 204
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.57 E-value=0.12 Score=58.50 Aligned_cols=60 Identities=13% Similarity=-0.023 Sum_probs=43.6
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
..|-+-|+.++..++.. + +-++|....|+|||..+-+++..+.. .+.++++++|+.....
T Consensus 351 ~~Ls~~Q~~Av~~i~~s---~-~~~il~G~aGTGKTtll~~i~~~~~~---~g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGS---G-DIAVVVGRAGTGKSTMLKAAREAWEA---AGYRVIGAALSGKAAE 410 (744)
T ss_pred CCCCHHHHHHHHHHhcC---C-CEEEEEecCCCCHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHH
Confidence 46889999999887632 1 23688999999999887776655533 3567888899865433
No 205
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.50 E-value=0.11 Score=52.90 Aligned_cols=46 Identities=22% Similarity=0.094 Sum_probs=35.3
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.++|+|....+-+....+- ....|+..+.|.|||..|.+|+..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~-~ha~Lf~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRH-PHAYLLHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred cCCCCcHHHHHHHHHCCCc-ceeeeeECCCCCCHHHHHHHHHHHHcC
Confidence 4678888888888765221 235678999999999999999988854
No 206
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.50 E-value=0.063 Score=57.94 Aligned_cols=145 Identities=19% Similarity=0.258 Sum_probs=71.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC--Ccc-----hhhHHHHHHHhcCCCeEE--EecCCCchhhh
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP--ASV-----LENWERELKKWCPSFSVL--QYHGAGRTAYS 258 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P--~sl-----l~~W~~E~~~~~p~~~v~--~~~g~~~~~~~ 258 (520)
.-+|+..|+|+|||.|..-+|..- .....| +|.|. ..+ .....+|+.--......+ .+.....
T Consensus 372 ~vvvivgETGSGKTTQl~QyL~ed--GY~~~G--mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~---- 443 (1042)
T KOG0924|consen 372 QVVVIVGETGSGKTTQLAQYLYED--GYADNG--MIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTS---- 443 (1042)
T ss_pred cEEEEEecCCCCchhhhHHHHHhc--ccccCC--eeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCC----
Confidence 457899999999999987766421 122333 55553 222 233444442222111111 1111110
Q ss_pred HHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHh--hhcCc-EE
Q 039292 259 RELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVA--RNANQ-RL 335 (520)
Q Consensus 259 ~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~--~~~~~-rl 335 (520)
...-|=.+|-+.|.+.... .. .-.++.+||+||||-=. -++.....+.... .+... .|
T Consensus 444 ------------~~T~IkymTDGiLLrEsL~----d~--~L~kYSviImDEAHERs-lNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 444 ------------EDTKIKYMTDGILLRESLK----DR--DLDKYSVIIMDEAHERS-LNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred ------------CceeEEEeccchHHHHHhh----hh--hhhheeEEEechhhhcc-cchHHHHHHHHHHHHhhccceEE
Confidence 1234556777777653221 11 12258899999999532 2333322222221 12222 46
Q ss_pred EEeccCCCCCHHHHHH-HHHHhCCC
Q 039292 336 MLTGTPLQNDLHELWS-LLEFMMPD 359 (520)
Q Consensus 336 ~LTgTPi~n~~~el~~-ll~fl~p~ 359 (520)
+.|||-=-.++..+|+ .=.|-.|+
T Consensus 505 VtSATm~a~kf~nfFgn~p~f~IpG 529 (1042)
T KOG0924|consen 505 VTSATMDAQKFSNFFGNCPQFTIPG 529 (1042)
T ss_pred EeeccccHHHHHHHhCCCceeeecC
Confidence 6788876666666665 22343444
No 207
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=95.42 E-value=0.019 Score=57.88 Aligned_cols=156 Identities=15% Similarity=0.127 Sum_probs=92.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHH-HHHHHhcCCC--e
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWE-RELKKWCPSF--S 245 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~-~E~~~~~p~~--~ 245 (520)
-..|..||--.. +| ..++.-...|+|||..-...+...........-+||++|...+.+-. .-...++... +
T Consensus 50 SaIQqraI~p~i----~G-~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 50 SAIQQRAILPCI----KG-HDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred hHHHhccccccc----cC-CceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccccee
Confidence 357888776555 45 34677778999999872222221112233345679999988776533 3344555444 3
Q ss_pred EEEe-cCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccC--CcchHHHH
Q 039292 246 VLQY-HGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALK--DKNSYRWK 322 (520)
Q Consensus 246 v~~~-~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik--n~~s~~~~ 322 (520)
+... .|.........+.. ....|++-|.+.+.... +...+......+.|+|||.... +..-+.+.
T Consensus 125 v~~~igg~~~~~~~~~i~~-------~~~hivvGTpgrV~dml-----~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI~~ 192 (397)
T KOG0327|consen 125 VHACIGGTNVRREDQALLK-------DKPHIVVGTPGRVFDML-----NRGSLSTDGIKMFVLDEADEMLSRGFKDQIYD 192 (397)
T ss_pred eeeecCcccchhhhhhhhc-------cCceeecCCchhHHHhh-----ccccccccceeEEeecchHhhhccchHHHHHH
Confidence 4433 33333322222221 13478888887765533 2235566678899999999775 34455555
Q ss_pred HHHHHhhhcCcEEEEeccCC
Q 039292 323 NLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 323 ~l~~l~~~~~~rl~LTgTPi 342 (520)
....+. ...+.+++|||-.
T Consensus 193 if~~lp-~~vQv~l~SAT~p 211 (397)
T KOG0327|consen 193 IFQELP-SDVQVVLLSATMP 211 (397)
T ss_pred HHHHcC-cchhheeecccCc
Confidence 555553 4557889999964
No 208
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.35 E-value=0.21 Score=48.35 Aligned_cols=24 Identities=17% Similarity=0.012 Sum_probs=19.5
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
...+|..++|+|||..+.++...+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~ 69 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAEL 69 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999998877766654
No 209
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.32 E-value=0.21 Score=52.74 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=37.5
Q ss_pred CccEEEEeCccccCCcchHHHHHHHHHhh----hcCcEEEEeccCCCCCHHHHHHHHHHhCC
Q 039292 301 RWSCVLMDEAHALKDKNSYRWKNLMSVAR----NANQRLMLTGTPLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s~~~~~l~~l~~----~~~~rl~LTgTPi~n~~~el~~ll~fl~p 358 (520)
.+++||||-+-+..... .....+..+.. .....++|++|+=.+.+.+++..++.+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~-~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDK-RLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCH-HHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 58999999987654322 22333333321 22447889999988888888887776665
No 210
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.27 E-value=0.31 Score=51.58 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=25.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+++...+|+|||.++..++..+.. .+.++++|+.
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~---~g~kV~lV~~ 131 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKK---KGLKVGLVAA 131 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEecC
Confidence 578889999999999888877753 2345555554
No 211
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.21 E-value=0.062 Score=53.62 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=21.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~ 213 (520)
++++..++|+|||..|.++...+..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~ 84 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHR 84 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999888777654
No 212
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.20 E-value=0.26 Score=51.08 Aligned_cols=116 Identities=17% Similarity=0.194 Sum_probs=66.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGL 269 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~ 269 (520)
.+|..++|.|||..++.++..+.. ..+++|+|.-.....+......++.-..
T Consensus 85 vLI~G~pG~GKStLllq~a~~~a~---~g~~VlYvs~EEs~~qi~~Ra~rlg~~~------------------------- 136 (372)
T cd01121 85 ILIGGDPGIGKSTLLLQVAARLAK---RGGKVLYVSGEESPEQIKLRADRLGIST------------------------- 136 (372)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEECCcCHHHHHHHHHHcCCCc-------------------------
Confidence 578999999999999988876643 3468888876544555443333321100
Q ss_pred CCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--------hHH---HHHHHHHhhhcCcEEEEe
Q 039292 270 PPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN--------SYR---WKNLMSVARNANQRLMLT 338 (520)
Q Consensus 270 ~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~--------s~~---~~~l~~l~~~~~~rl~LT 338 (520)
-++.+.....+.. ....+...+.++||||+.+.+.... ++. ...+..++....-.++++
T Consensus 137 ---~~l~l~~e~~le~-------I~~~i~~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilv 206 (372)
T cd01121 137 ---ENLYLLAETNLED-------ILASIEELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIV 206 (372)
T ss_pred ---ccEEEEccCcHHH-------HHHHHHhcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 0222222111211 2233455688999999998874211 211 223445554556678888
Q ss_pred ccCCC
Q 039292 339 GTPLQ 343 (520)
Q Consensus 339 gTPi~ 343 (520)
|-...
T Consensus 207 ghvtk 211 (372)
T cd01121 207 GHVTK 211 (372)
T ss_pred eeccC
Confidence 76544
No 213
>CHL00181 cbbX CbbX; Provisional
Probab=95.20 E-value=0.13 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=20.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~ 213 (520)
++|..++|+|||..|-+++..+..
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~ 85 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYK 85 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999888776543
No 214
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.17 E-value=0.39 Score=52.63 Aligned_cols=43 Identities=23% Similarity=0.078 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcC-CCc-eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKG-IAG-AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~-~~g-~ILademGlGKTi~aia~l~~l~~ 213 (520)
.|...++.|......+ ... .|+..+.|+|||..|..|+..+..
T Consensus 17 Gq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 17 GQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3556666665544443 233 479999999999999999987754
No 215
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.08 E-value=0.25 Score=53.27 Aligned_cols=43 Identities=26% Similarity=0.156 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
-|...++.+......+. ++.|+..+.|+|||..|-.++..+..
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc 69 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNC 69 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45555555554334432 36789999999999999999887743
No 216
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.07 E-value=0.19 Score=46.26 Aligned_cols=48 Identities=23% Similarity=0.221 Sum_probs=37.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~ 240 (520)
.++..++|+|||..++.++..... .+.++++++......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCHHHHHHHHHHc
Confidence 478899999999999998876643 467899998877777766666554
No 217
>PRK06893 DNA replication initiation factor; Validated
Probab=95.04 E-value=0.38 Score=46.33 Aligned_cols=23 Identities=9% Similarity=-0.174 Sum_probs=19.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~ 212 (520)
.+|..++|+|||..+.++...+.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 58999999999988887776553
No 218
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.03 E-value=0.72 Score=51.20 Aligned_cols=41 Identities=27% Similarity=0.212 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhcC-C-CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-I-AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~-~g~ILademGlGKTi~aia~l~~l~ 212 (520)
|...++.|......+ . .+.|+....|+|||..|..|+..+.
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 444444444433333 2 3468999999999999999887664
No 219
>PRK04195 replication factor C large subunit; Provisional
Probab=95.02 E-value=0.26 Score=53.05 Aligned_cols=42 Identities=19% Similarity=0.071 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhcC--CCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 170 PYQLVGVNFLLLLYRKG--IAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~--~~g~ILademGlGKTi~aia~l~~l 211 (520)
+.+...+.-++..+..| ...+||..++|+|||..|-+++..+
T Consensus 20 ~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 20 EKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 44444444444444332 3568999999999999888776543
No 220
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.01 E-value=0.42 Score=42.37 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=25.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
++..++|+|||..+..++..... ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~---~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT---KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECC
Confidence 67778999999999888876633 45677777664
No 221
>PRK08181 transposase; Validated
Probab=95.01 E-value=0.41 Score=47.27 Aligned_cols=47 Identities=23% Similarity=0.196 Sum_probs=33.2
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
..+.+-|..++.++......+ .+++|..++|+|||..+.++...+..
T Consensus 86 ~~~~~~~~~~L~~~~~~~~~~-~nlll~Gp~GtGKTHLa~Aia~~a~~ 132 (269)
T PRK08181 86 PMVSKAQVMAIAAGDSWLAKG-ANLLLFGPPGGGKSHLAAAIGLALIE 132 (269)
T ss_pred CCCCHHHHHHHHHHHHHHhcC-ceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 456677887775552222234 56899999999999999888776643
No 222
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.97 E-value=0.19 Score=58.15 Aligned_cols=130 Identities=17% Similarity=0.093 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeE
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSV 246 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v 246 (520)
.|-+-|..+|..++. +.+-++|-...|+|||.+.-++...+ . ..+..++.++|+.....=..+-
T Consensus 346 ~Ls~eQr~Av~~il~----s~~v~vv~G~AGTGKTT~l~~~~~~~-e--~~G~~V~~~ApTGkAA~~L~e~--------- 409 (988)
T PRK13889 346 VLSGEQADALAHVTD----GRDLGVVVGYAGTGKSAMLGVAREAW-E--AAGYEVRGAALSGIAAENLEGG--------- 409 (988)
T ss_pred CCCHHHHHHHHHHhc----CCCeEEEEeCCCCCHHHHHHHHHHHH-H--HcCCeEEEecCcHHHHHHHhhc---------
Confidence 689999999988762 21235788899999998654443333 2 2355688888876543222110
Q ss_pred EEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHH
Q 039292 247 LQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMS 326 (520)
Q Consensus 247 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~ 326 (520)
.|.. ...+.+ +.... ..........++|||||+-.+. +.....+..
T Consensus 410 ---tGi~----a~TI~s-------------------ll~~~-----~~~~~~l~~~~vlIVDEASMv~---~~~m~~LL~ 455 (988)
T PRK13889 410 ---SGIA----SRTIAS-------------------LEHGW-----GQGRDLLTSRDVLVIDEAGMVG---TRQLERVLS 455 (988)
T ss_pred ---cCcc----hhhHHH-------------------HHhhh-----cccccccccCcEEEEECcccCC---HHHHHHHHH
Confidence 0110 011111 10000 0000012246799999999984 333444444
Q ss_pred HhhhcCcEEEEeccCCCCCH
Q 039292 327 VARNANQRLMLTGTPLQNDL 346 (520)
Q Consensus 327 l~~~~~~rl~LTgTPi~n~~ 346 (520)
.+.....+++|.|=|-|-..
T Consensus 456 ~a~~~garvVLVGD~~QLps 475 (988)
T PRK13889 456 HAADAGAKVVLVGDPQQLQA 475 (988)
T ss_pred hhhhCCCEEEEECCHHHcCC
Confidence 33356779999998876543
No 223
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.97 E-value=0.71 Score=41.88 Aligned_cols=43 Identities=21% Similarity=0.259 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhcC-CC-ceEEeCCCCCCHHHHHHHHHHHHHHh
Q 039292 172 QLVGVNFLLLLYRKG-IA-GAILADEMGLGKTIQAITYLMLLKHL 214 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~~-g~ILademGlGKTi~aia~l~~l~~~ 214 (520)
|...+..|......+ .. ..|+..+.|.||+..|.+|+..+...
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~ 46 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCS 46 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-T
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 556666666655554 22 35888899999999999999888653
No 224
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.97 E-value=0.16 Score=50.18 Aligned_cols=42 Identities=21% Similarity=0.123 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhc-CCCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRK-GIAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~-~~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
+|...|+-|...... ...-.++-.++|+|||-++.+|...+.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~ 82 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALN 82 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhc
Confidence 788888888765544 333467788999999999999998774
No 225
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.96 E-value=0.51 Score=48.91 Aligned_cols=127 Identities=13% Similarity=0.159 Sum_probs=65.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc----chhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS----VLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLA 265 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s----ll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~ 265 (520)
+.|...+|+|||..+..++..+.. .+.++++|.--. .+.||. .|.....
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~---~GkkVglI~aDt~RiaAvEQLk----~yae~lg-------------------- 296 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHG---KKKTVGFITTDHSRIGTVQQLQ----DYVKTIG-------------------- 296 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---cCCcEEEEecCCcchHHHHHHH----HHhhhcC--------------------
Confidence 467788999999998888776632 344566665522 344444 3321111
Q ss_pred hcCCCCCccEE-EeehhhHhhhhccccchHHHHhh-cCccEEEEeCccccCCcchHHHHHHHHHhh-hcCc--EEEEecc
Q 039292 266 KAGLPPPFNVL-LVCYSLFERHSVQQKDDRKILKR-WRWSCVLMDEAHALKDKNSYRWKNLMSVAR-NANQ--RLMLTGT 340 (520)
Q Consensus 266 ~~~~~~~~~vl-itty~~l~~~~~~~~~~~~~l~~-~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~-~~~~--rl~LTgT 340 (520)
..++ ..+...+.. ....+.. .++++||||-+=+..+..... ..+..+.. ..+. .++|++|
T Consensus 297 -------ipv~v~~d~~~L~~-------aL~~lk~~~~~DvVLIDTaGRs~kd~~lm-~EL~~~lk~~~PdevlLVLsAT 361 (436)
T PRK11889 297 -------FEVIAVRDEAAMTR-------ALTYFKEEARVDYILIDTAGKNYRASETV-EEMIETMGQVEPDYICLTLSAS 361 (436)
T ss_pred -------CcEEecCCHHHHHH-------HHHHHHhccCCCEEEEeCccccCcCHHHH-HHHHHHHhhcCCCeEEEEECCc
Confidence 1111 112222222 2222332 358999999887654333222 22333221 2222 3557777
Q ss_pred CCCCCHHHHHHHHHHhCC
Q 039292 341 PLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 341 Pi~n~~~el~~ll~fl~p 358 (520)
--.+.+.+....++.+..
T Consensus 362 tk~~d~~~i~~~F~~~~i 379 (436)
T PRK11889 362 MKSKDMIEIITNFKDIHI 379 (436)
T ss_pred cChHHHHHHHHHhcCCCC
Confidence 666666666665555433
No 226
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.93 E-value=0.54 Score=50.87 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcC-CCc-eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-IAG-AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~~g-~ILademGlGKTi~aia~l~~l~~ 213 (520)
|...++.|......+ ... .|+..+.|+|||..|..++..+..
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444555555444332 233 489999999999999998887743
No 227
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.92 E-value=0.24 Score=50.36 Aligned_cols=40 Identities=18% Similarity=0.002 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcC-CCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 173 LVGVNFLLLLYRKG-IAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 173 ~~gv~~l~~~~~~~-~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
...+.++......+ .+..++..++|+|||..+.+++..+.
T Consensus 21 ~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 21 DEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred HHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444444433333 23678999999999999999887664
No 228
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.91 E-value=0.56 Score=49.84 Aligned_cols=26 Identities=19% Similarity=0.142 Sum_probs=21.2
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
++.+|..++|+|||..+-++...+..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~ 156 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHH
Confidence 46799999999999888877776643
No 229
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.91 E-value=0.28 Score=52.24 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=28.0
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL 230 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll 230 (520)
.++.+|..++|+|||..+-++...+.. ......++.|.+...+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~-~~~~~~v~yv~~~~f~ 183 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIES-NFSDLKVSYMSGDEFA 183 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEEHHHHH
Confidence 356889999999999888777766543 2233455555444333
No 230
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.82 E-value=0.26 Score=51.80 Aligned_cols=36 Identities=19% Similarity=0.079 Sum_probs=25.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
++.+|..++|+|||..+.++...+... .....++.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~-~~~~~v~yi 172 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILEN-NPNAKVVYV 172 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHh-CCCCcEEEE
Confidence 457899999999999988887766542 223344444
No 231
>PHA02533 17 large terminase protein; Provisional
Probab=94.78 E-value=0.29 Score=53.23 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=79.8
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh-HHHHHHH---hc
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN-WERELKK---WC 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~-W~~E~~~---~~ 241 (520)
-.|.|+|+.-+..|.. .. -.++.-.=..|||..+.+++.++.. ......+++++|..--.. -.+.+.. -.
T Consensus 58 f~L~p~Q~~i~~~~~~---~R--~~ii~~aRq~GKStl~a~~al~~a~-~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~ 131 (534)
T PHA02533 58 VQMRDYQKDMLKIMHK---NR--FNACNLSRQLGKTTVVAIFLLHYVC-FNKDKNVGILAHKASMAAEVLDRTKQAIELL 131 (534)
T ss_pred cCCcHHHHHHHHHHhc---Ce--EEEEEEcCcCChHHHHHHHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 3789999998887741 12 2356666889999887766544332 233457788888322111 1123322 22
Q ss_pred CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHH
Q 039292 242 PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRW 321 (520)
Q Consensus 242 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~ 321 (520)
|.+.-......++. .+ ....+..|.+.+- +.....+...+++|+||+|.+++.. ..+
T Consensus 132 P~l~~~~i~~~~~~----~I------~l~NGS~I~~lss------------~~~t~rG~~~~~liiDE~a~~~~~~-e~~ 188 (534)
T PHA02533 132 PDFLQPGIVEWNKG----SI------ELENGSKIGAYAS------------SPDAVRGNSFAMIYIDECAFIPNFI-DFW 188 (534)
T ss_pred HHHhhcceeecCcc----EE------EeCCCCEEEEEeC------------CCCccCCCCCceEEEeccccCCCHH-HHH
Confidence 32110000000000 00 0001122222221 1123456678899999999997643 344
Q ss_pred HHHHHHhhh-cCcEEEEeccCC-CCCHHHHHHHH
Q 039292 322 KNLMSVARN-ANQRLMLTGTPL-QNDLHELWSLL 353 (520)
Q Consensus 322 ~~l~~l~~~-~~~rl~LTgTPi-~n~~~el~~ll 353 (520)
.++...... ...++.+..||- .|..-++|...
T Consensus 189 ~ai~p~lasg~~~r~iiiSTp~G~n~fye~~~~a 222 (534)
T PHA02533 189 LAIQPVISSGRSSKIIITSTPNGLNHFYDIWTAA 222 (534)
T ss_pred HHHHHHHHcCCCceEEEEECCCchhhHHHHHHHH
Confidence 444433222 234688888885 34455555433
No 232
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.77 E-value=0.58 Score=51.85 Aligned_cols=42 Identities=21% Similarity=0.108 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcC-CCc-eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-IAG-AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~~g-~ILademGlGKTi~aia~l~~l~~ 213 (520)
|...+..|......+ +.. .|+..+.|+|||..|..|+..+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 444455554444433 223 478999999999999999887754
No 233
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.76 E-value=1.6 Score=39.66 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=19.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~ 213 (520)
.++...+|+|||..+..++..+..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 367789999999999888877654
No 234
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.70 E-value=0.2 Score=54.07 Aligned_cols=68 Identities=21% Similarity=0.164 Sum_probs=49.5
Q ss_pred CCcHHHHHHHHHHHHHHh-------cCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYR-------KGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~-------~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
..+....+++.|.+.... ....|+||+..+|+|||+.|-++... ...+++-|-...++..|.-|..+
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~------~~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALE------SRSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhh------CCCeEEEeeCHHHhccccchHHH
Confidence 467788888888875443 23358899999999999998887752 23456655555888889877765
Q ss_pred h
Q 039292 240 W 240 (520)
Q Consensus 240 ~ 240 (520)
-
T Consensus 323 ~ 323 (494)
T COG0464 323 N 323 (494)
T ss_pred H
Confidence 3
No 235
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=94.68 E-value=0.3 Score=52.09 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=21.5
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
++++|..++|+|||..+-++...+..
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~ 174 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILE 174 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999988888776644
No 236
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.57 E-value=0.61 Score=50.73 Aligned_cols=41 Identities=20% Similarity=0.162 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~ 212 (520)
|...+..+......+. ...|+..+.|+|||..|..++..+.
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3444444444444431 2467999999999999999988774
No 237
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.54 E-value=0.34 Score=50.19 Aligned_cols=42 Identities=26% Similarity=0.102 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHhcC-CC-ceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKG-IA-GAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~-~~-g~ILademGlGKTi~aia~l~~l~ 212 (520)
-|...+..+......+ .. ..|+..+.|+|||..|-+++..+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 4556666665544443 22 358999999999999999887664
No 238
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.49 E-value=0.87 Score=48.86 Aligned_cols=42 Identities=29% Similarity=0.250 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcC-C-CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-I-AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~-~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|...++.|......+ . ...|+....|+|||..|..++..+..
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcC
Confidence 444455554443333 2 35789999999999999888876643
No 239
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.47 E-value=0.35 Score=50.56 Aligned_cols=26 Identities=15% Similarity=0.305 Sum_probs=21.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.+.|+..+.|+|||..|.+|+..+..
T Consensus 37 ha~Lf~Gp~G~GKt~lA~~lA~~l~c 62 (394)
T PRK07940 37 HAWLFTGPPGSGRSVAARAFAAALQC 62 (394)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 34679999999999999999877643
No 240
>PRK08727 hypothetical protein; Validated
Probab=94.43 E-value=0.5 Score=45.65 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=20.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~ 212 (520)
..++|..++|+|||..+.++...+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~ 66 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAE 66 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4579999999999988888776654
No 241
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.41 E-value=0.39 Score=51.41 Aligned_cols=24 Identities=33% Similarity=0.274 Sum_probs=20.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~ 212 (520)
+.|+..++|+|||..|-+++..+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999988887663
No 242
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.39 E-value=0.64 Score=46.32 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=29.4
Q ss_pred HHHHhhcCccEEEEeCccccCCcch-H---HHHHHHHHhhhcCcEEEEeccC
Q 039292 294 RKILKRWRWSCVLMDEAHALKDKNS-Y---RWKNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 294 ~~~l~~~~~~~vIiDEaH~ikn~~s-~---~~~~l~~l~~~~~~rl~LTgTP 341 (520)
...|...+..++||||.|++-..+. + ....++.++..-.--+++.||+
T Consensus 138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 4567888999999999999743322 2 2223333332333346667776
No 243
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.38 E-value=0.7 Score=47.05 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHHHH---HHhcCCCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLL---LYRKGIAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~---~~~~~~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
..+.++..++.++.. .+.....+.+|..++|+|||..+.+++..+..
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~ 209 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD 209 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH
Confidence 445556566654432 22233368899999999999999988877754
No 244
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.27 E-value=0.39 Score=55.29 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHH-hcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLY-RKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 172 Q~~gv~~l~~~~-~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
|..-|+.+.... +...+++||..++|.|||..+=+++..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 444577776532 2334578999999999999887777655
No 245
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.26 E-value=0.22 Score=42.77 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=23.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL 230 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll 230 (520)
.+|-.++|+|||..+-.++..+ ..+++.+....+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l------~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL------GFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT------TSEEEEEETTHHH
T ss_pred CEEECcCCCCeeHHHHHHHhhc------ccccccccccccc
Confidence 3677889999999888777654 2345555554444
No 246
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.26 E-value=0.53 Score=53.78 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~ 213 (520)
..|+....|+|||..+..|+..|..
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C 63 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNC 63 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4589999999999999999887754
No 247
>PRK06921 hypothetical protein; Provisional
Probab=94.24 E-value=0.63 Score=45.93 Aligned_cols=27 Identities=22% Similarity=0.067 Sum_probs=22.5
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.++.+|..++|+|||..+.+++..+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 357899999999999999988876643
No 248
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.24 E-value=0.81 Score=52.10 Aligned_cols=125 Identities=9% Similarity=0.050 Sum_probs=73.0
Q ss_pred ccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHh--hhcCcEEEEeccCCCC--CHHH
Q 039292 273 FNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVA--RNANQRLMLTGTPLQN--DLHE 348 (520)
Q Consensus 273 ~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~--~~~~~rl~LTgTPi~n--~~~e 348 (520)
.+|+++|...+..+.. ...+.-..+..||+||||++.+..+..+ .+..+. .+..+..++|+.|-.- ...-
T Consensus 8 ggi~~~T~rIl~~DlL-----~~ri~~~~itgiiv~~Ahr~~~~~~eaF-I~rlyr~~n~~gfIkafSdsP~~~~~g~~~ 81 (814)
T TIGR00596 8 GGIFSITSRILVVDLL-----TGIIPPELITGILVLRADRIIESSQEAF-ILRLYRQKNKTGFIKAFSDNPEAFTMGFSP 81 (814)
T ss_pred CCEEEEechhhHhHHh-----cCCCCHHHccEEEEeecccccccccHHH-HHHHHHHhCCCcceEEecCCCcccccchHH
Confidence 4899999999877542 2233344578999999999975444332 222221 1456789999999752 2333
Q ss_pred HHHHHHHhCCCCCCChHHHHHHhhcCCchHHHHHHHHhhcchhhheeHhHHhhhcCC--cEEEEEEeCCCHHHHHHHHHH
Q 039292 349 LWSLLEFMMPDLFATEDVDLKKLLNGEDRDLIGRMKSILGPFILRRLKSDVMQQLVP--KIQWVEYVTMERPQEDAYRVA 426 (520)
Q Consensus 349 l~~ll~fl~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~--k~e~~v~v~ms~~Q~~~Y~~~ 426 (520)
+-.++.-|.-... ++.=|.-.+|...|-+ .....+.|+||+..+.+...+
T Consensus 82 l~~vmk~L~i~~v----------------------------~l~prf~~~V~~~l~~~~~~V~ei~V~l~~~m~~Iq~~l 133 (814)
T TIGR00596 82 LETKMRNLFLRHV----------------------------YLWPRFHVEVASSLEKHKAEVIELHVSLTDSMSQIQSAI 133 (814)
T ss_pred HHHHHHHhCcCeE----------------------------EEeCCCchHHHHHhccCCCeEEEEEeCCCHHHHHHHHHH
Confidence 3333333322211 1111233344444432 346678999999988888776
Q ss_pred HHHHH
Q 039292 427 IEEYR 431 (520)
Q Consensus 427 ~~~~~ 431 (520)
..-..
T Consensus 134 ~~~l~ 138 (814)
T TIGR00596 134 LECLN 138 (814)
T ss_pred HHHHH
Confidence 65433
No 249
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.22 E-value=0.46 Score=45.33 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=16.9
Q ss_pred CCceEEeCCCCCCHHHHHHHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~ 209 (520)
...+||..++|+|||..|-.++.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~ 72 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIAN 72 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHH
T ss_pred cceEEEECCCccchhHHHHHHHh
Confidence 34689999999999986655443
No 250
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=94.18 E-value=0.34 Score=54.34 Aligned_cols=142 Identities=13% Similarity=0.122 Sum_probs=81.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-c---hhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-V---LENWERELKKWCPSFSVLQYHGAGRTAYSRELSS 263 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-l---l~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~ 263 (520)
.|.|.-.-||=|||++|...+... .-.++.+.||+..- + -..|...+-.|..-...+...+.........-
T Consensus 94 ~g~iaEM~TGEGKTL~atlp~yln---aL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY-- 168 (822)
T COG0653 94 LGDIAEMRTGEGKTLVATLPAYLN---ALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAY-- 168 (822)
T ss_pred CCceeeeecCCchHHHHHHHHHHH---hcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHH--
Confidence 467999999999999886654322 22455566666632 2 24499999999843333344444322211111
Q ss_pred HhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccC
Q 039292 264 LAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 264 ~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTP 341 (520)
..+|.-+|..-|..++.... ..........+.+.|+||+..|- ...++-.+.+|| |
T Consensus 169 --------~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL-------------IDEARtPLiISG-~ 226 (822)
T COG0653 169 --------ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL-------------IDEARTPLIISG-P 226 (822)
T ss_pred --------hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee-------------eeccccceeeec-c
Confidence 23666555544432211100 01111222268899999998762 225667799999 9
Q ss_pred CCCCHHHHHHHHHHh
Q 039292 342 LQNDLHELWSLLEFM 356 (520)
Q Consensus 342 i~n~~~el~~ll~fl 356 (520)
...+...+..+.+|+
T Consensus 227 ~~~~~~~Y~~~~~~v 241 (822)
T COG0653 227 AEDSSELYKKVDDLV 241 (822)
T ss_pred cccCchHHHHHHHHH
Confidence 888865555555555
No 251
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.13 E-value=0.62 Score=51.38 Aligned_cols=42 Identities=19% Similarity=0.078 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|...+..|......+. ...|+....|+|||..+..++..+..
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5556666655544432 23488999999999999999887753
No 252
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.08 E-value=0.39 Score=44.51 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=24.9
Q ss_pred ccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEecc
Q 039292 302 WSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGT 340 (520)
Q Consensus 302 ~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgT 340 (520)
.++|+|||||-+. ......+..++..-...+++.|.
T Consensus 83 ~~~v~IDEaQF~~---~~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 83 VDCVLIDEAQFFD---EELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred cCEEEEehhHhCC---HHHHHHHHHHHhhcCCEEEEecc
Confidence 6899999999984 34455566665333667777764
No 253
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.06 E-value=0.91 Score=46.78 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHHHHHhcC--CCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 168 LKPYQLVGVNFLLLLYRKG--IAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~--~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
=|..|...+...+.....+ .+.+++..++|+|||..+-+++..+..
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3677777776665433222 235789999999999999888876643
No 254
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.02 E-value=0.12 Score=49.08 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.0
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
....|++..+|.|||..+.+++..|.
T Consensus 48 mP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 48 MPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CCceEeeCCCCCchhhHHHHHHHHHh
Confidence 35689999999999999988887663
No 255
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.95 E-value=0.41 Score=49.10 Aligned_cols=25 Identities=28% Similarity=0.129 Sum_probs=19.2
Q ss_pred cCCCceEEeCCCCCCHHHHHHHHHH
Q 039292 185 KGIAGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 185 ~~~~g~ILademGlGKTi~aia~l~ 209 (520)
......||..++|+|||..|-.+..
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHH
Confidence 3456789999999999987655443
No 256
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.93 E-value=1.2 Score=46.39 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHHHhc--CCCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLYRK--GIAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~--~~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|.-|..-+.-.+..... ....+++...+|+|||..+-.++..+..
T Consensus 35 Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 35 REEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 44555554444432222 2235799999999999999888876644
No 257
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.88 E-value=1.6 Score=44.27 Aligned_cols=34 Identities=18% Similarity=0.139 Sum_probs=24.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
..+...+|+|||.++..++..+.. .++.++++.-
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~---~g~~V~Li~~ 150 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKA---QGKKVLLAAG 150 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh---cCCeEEEEec
Confidence 345679999999999888877643 3456676654
No 258
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=93.87 E-value=0.074 Score=57.24 Aligned_cols=140 Identities=16% Similarity=0.219 Sum_probs=75.7
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cch----hhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCC
Q 039292 195 EMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVL----ENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGL 269 (520)
Q Consensus 195 emGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll----~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~ 269 (520)
+=.-|||...+.+|+.+.. .-.+=.+.+|+-. .+. ..-...+.+|+|.-++..-.|.. -... . .
T Consensus 210 PRRHGKTWf~VpiIsllL~-s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~k~~t-I~~s-------~--p 278 (668)
T PHA03372 210 PRRHGKTWFIIPIISFLLK-NIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIENKDNV-ISID-------H--R 278 (668)
T ss_pred cccCCceehHHHHHHHHHH-hhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeeecCcE-EEEe-------c--C
Confidence 4667999888888876654 3344467777773 222 22344467899876653222210 0000 0 0
Q ss_pred CCCccEEEee-hhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhh-hcCcEEEEecc-------
Q 039292 270 PPPFNVLLVC-YSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVAR-NANQRLMLTGT------- 340 (520)
Q Consensus 270 ~~~~~vlitt-y~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~-~~~~rl~LTgT------- 340 (520)
..+..++.++ + +...+++..|+++++||||-++.. ....+..+.. +....|.+|.|
T Consensus 279 g~Kst~~fasc~------------n~NsiRGQ~fnll~VDEA~FI~~~---a~~tilgfm~q~~~KiIfISS~Nsg~~sT 343 (668)
T PHA03372 279 GAKSTALFASCY------------NTNSIRGQNFHLLLVDEAHFIKKD---AFNTILGFLAQNTTKIIFISSTNTTNDAT 343 (668)
T ss_pred CCcceeeehhhc------------cCccccCCCCCEEEEehhhccCHH---HHHHhhhhhcccCceEEEEeCCCCCCccc
Confidence 0011122222 2 333567889999999999999643 2334443322 44445556544
Q ss_pred C----CCCCHHHHHHHHHHhCCCC
Q 039292 341 P----LQNDLHELWSLLEFMMPDL 360 (520)
Q Consensus 341 P----i~n~~~el~~ll~fl~p~~ 360 (520)
. +.|...++.+.+.|++++.
T Consensus 344 SfL~~Lk~~~~~~lnVVsYvC~~H 367 (668)
T PHA03372 344 CFLTKLNNSPFDMLNVVSYVCEEH 367 (668)
T ss_pred hHHHhccCchhhheeeEEEEchhh
Confidence 2 2345566666666776654
No 259
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=93.84 E-value=0.62 Score=47.78 Aligned_cols=45 Identities=11% Similarity=-0.016 Sum_probs=32.8
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWEREL 237 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 237 (520)
..|++|..++|.|||++|-+++..+ +-++++|....+...|.-|=
T Consensus 148 PlgllL~GPPGcGKTllAraiA~el------g~~~i~vsa~eL~sk~vGEs 192 (413)
T PLN00020 148 PLILGIWGGKGQGKSFQCELVFKKM------GIEPIVMSAGELESENAGEP 192 (413)
T ss_pred CeEEEeeCCCCCCHHHHHHHHHHHc------CCCeEEEEHHHhhcCcCCcH
Confidence 3578899999999999998877654 23456666666777775443
No 260
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=93.79 E-value=0.87 Score=44.84 Aligned_cols=48 Identities=21% Similarity=0.121 Sum_probs=33.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
++++..+|+|||..++.++..+.. ..+.+++++.-.....++...+..
T Consensus 33 ~~i~g~~G~GKT~l~~~~~~~~~~--~~g~~vl~iS~E~~~~~~~~r~~~ 80 (271)
T cd01122 33 IILTAGTGVGKTTFLREYALDLIT--QHGVRVGTISLEEPVVRTARRLLG 80 (271)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH--hcCceEEEEEcccCHHHHHHHHHH
Confidence 688999999999999988776532 225678888765544444444433
No 261
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.75 E-value=0.48 Score=55.40 Aligned_cols=131 Identities=19% Similarity=0.083 Sum_probs=74.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCe
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFS 245 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~ 245 (520)
..|-+-|..+|..+. .+.+-++|-...|+|||.+.-++...+. ..+..++.++|+.-...= +..-.
T Consensus 380 ~~Ls~eQ~~Av~~i~----~~~r~~~v~G~AGTGKTt~l~~~~~~~e---~~G~~V~g~ApTgkAA~~---L~e~~---- 445 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA----GPARIAAVVGRAGAGKTTMMKAAREAWE---AAGYRVVGGALAGKAAEG---LEKEA---- 445 (1102)
T ss_pred CCCCHHHHHHHHHHh----ccCCeEEEEeCCCCCHHHHHHHHHHHHH---HcCCeEEEEcCcHHHHHH---HHHhh----
Confidence 368999999998775 2212367888899999987766655442 245678888886544322 22111
Q ss_pred EEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHH
Q 039292 246 VLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLM 325 (520)
Q Consensus 246 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~ 325 (520)
|. --.|...+...... ... .-..-++||||||..+. +.....+.
T Consensus 446 -----Gi-----------------------~a~TIas~ll~~~~---~~~--~l~~~~vlVIDEAsMv~---~~~m~~Ll 489 (1102)
T PRK13826 446 -----GI-----------------------QSRTLSSWELRWNQ---GRD--QLDNKTVFVLDEAGMVA---SRQMALFV 489 (1102)
T ss_pred -----CC-----------------------CeeeHHHHHhhhcc---Ccc--CCCCCcEEEEECcccCC---HHHHHHHH
Confidence 00 00111111000000 000 01124699999999993 33333444
Q ss_pred HHhhhcCcEEEEeccCCCCCH
Q 039292 326 SVARNANQRLMLTGTPLQNDL 346 (520)
Q Consensus 326 ~l~~~~~~rl~LTgTPi~n~~ 346 (520)
.....+..+++|-|=|-|-..
T Consensus 490 ~~~~~~garvVLVGD~~QL~~ 510 (1102)
T PRK13826 490 EAVTRAGAKLVLVGDPEQLQP 510 (1102)
T ss_pred HHHHhcCCEEEEECCHHHcCC
Confidence 443356779999998876544
No 262
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.69 E-value=0.27 Score=50.11 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=34.2
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHh
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~ 240 (520)
.+|+++..++|+|||+.|=|++.. -+.++.=|....+...|.-|=++.
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATE------c~tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATE------CGTTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHh------hcCeEEEechhhhhhhhccchHHH
Confidence 368999999999999988777642 124455555566777797765553
No 263
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.61 E-value=1.4 Score=43.25 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=38.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHH
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWER 235 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~ 235 (520)
.-.+...+.-+...+.++ .|++|-..+|.|||..|+|+...+.. .+.+++++.=+.++.++..
T Consensus 88 ~~~~l~~~~~~~~~~~~~-~nl~l~G~~G~GKThLa~Ai~~~l~~---~g~sv~f~~~~el~~~Lk~ 150 (254)
T COG1484 88 DKKALEDLASLVEFFERG-ENLVLLGPPGVGKTHLAIAIGNELLK---AGISVLFITAPDLLSKLKA 150 (254)
T ss_pred hHHHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEEHHHHHHHHHH
Confidence 333444443333333334 68899999999999999999887752 3445555544444444433
No 264
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.60 E-value=1 Score=51.15 Aligned_cols=55 Identities=20% Similarity=0.135 Sum_probs=40.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh-CCCCCCEEEEeCCc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL-NNDPGPHLIVCPAS 228 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~-~~~~~~~LIV~P~s 228 (520)
.|-|-|..+|.+- . +.+++...+|+|||.+.+.-+.+|... ...+..+|+|+.+.
T Consensus 4 ~Ln~~Q~~av~~~-----~--g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTn 59 (715)
T TIGR01075 4 GLNDKQREAVAAP-----P--GNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTN 59 (715)
T ss_pred ccCHHHHHHHcCC-----C--CCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccH
Confidence 5889999998532 1 346777779999999998888887653 23456688887743
No 265
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.58 E-value=2 Score=41.10 Aligned_cols=38 Identities=16% Similarity=0.273 Sum_probs=24.6
Q ss_pred CccEEEEeCccccCCcch---HHHHHHHHHhhhcCcEEEEec
Q 039292 301 RWSCVLMDEAHALKDKNS---YRWKNLMSVARNANQRLMLTG 339 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s---~~~~~l~~l~~~~~~rl~LTg 339 (520)
..+++|||..|.+.+... ..+..+..+. ....++++|+
T Consensus 97 ~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~-~~~k~li~ts 137 (219)
T PF00308_consen 97 SADLLIIDDIQFLAGKQRTQEELFHLFNRLI-ESGKQLILTS 137 (219)
T ss_dssp TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH-HTTSEEEEEE
T ss_pred cCCEEEEecchhhcCchHHHHHHHHHHHHHH-hhCCeEEEEe
Confidence 689999999999987542 2333333333 3455666666
No 266
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.55 E-value=0.73 Score=50.53 Aligned_cols=27 Identities=22% Similarity=0.150 Sum_probs=21.3
Q ss_pred CCCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 186 GIAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 186 ~~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
..+.++|....|+|||..+.++...+.
T Consensus 313 ~~NpL~LyG~sGsGKTHLL~AIa~~a~ 339 (617)
T PRK14086 313 AYNPLFIYGESGLGKTHLLHAIGHYAR 339 (617)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 335688999999999988877776654
No 267
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.54 E-value=1 Score=47.93 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=34.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
.+|..++|.|||..++.++..+.. ...++|+|.-.....++.....+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~---~g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAA---AGGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccccHHHHHHHHHH
Confidence 578999999999999998876642 35678888876555555444443
No 268
>PRK08116 hypothetical protein; Validated
Probab=93.53 E-value=0.74 Score=45.48 Aligned_cols=62 Identities=21% Similarity=0.174 Sum_probs=40.0
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHH-----------HHHHhcCCCeEEEecCC
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWER-----------ELKKWCPSFSVLQYHGA 252 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~-----------E~~~~~p~~~v~~~~g~ 252 (520)
.|.+|..++|+|||..+.+++..+... ..+++++.-..++..... ++...+.+..++++...
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~---~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDl 187 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK---GVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDL 187 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecc
Confidence 468999999999999999998887542 456666654444444332 23333345566666544
No 269
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.53 E-value=1.5 Score=47.47 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcC-CCce-EEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-IAGA-ILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~~g~-ILademGlGKTi~aia~l~~l~~ 213 (520)
|...+..|......+ .... |+..++|+|||..|.+++..+..
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 445555554444433 2233 89999999999999999887743
No 270
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=93.45 E-value=1.1 Score=45.10 Aligned_cols=40 Identities=25% Similarity=0.182 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcC-CCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-IAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~~g~ILademGlGKTi~aia~l~~l 211 (520)
|...+..+......+ ....+|..++|+|||..+-+++..+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554443333 2357999999999999888877655
No 271
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.35 E-value=0.063 Score=57.20 Aligned_cols=113 Identities=15% Similarity=0.187 Sum_probs=59.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC-CcchhhHHHHHH-----HhcCCCeEEEecCCCchhhhHHHHHHhhc
Q 039292 194 DEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP-ASVLENWERELK-----KWCPSFSVLQYHGAGRTAYSRELSSLAKA 267 (520)
Q Consensus 194 demGlGKTi~aia~l~~l~~~~~~~~~~LIV~P-~sll~~W~~E~~-----~~~p~~~v~~~~g~~~~~~~~~~~~~~~~ 267 (520)
..+|+|||+++.++|.+... .+-+.+|..|- ++++..-...|- ++.- ..++.+.|..-.- +.+..+..
T Consensus 4 matgsgkt~~ma~lil~~y~--kgyr~flffvnq~nilekt~~nftd~~s~kylf-~e~i~~~d~~i~i--kkvn~fse- 77 (812)
T COG3421 4 MATGSGKTLVMAGLILECYK--KGYRNFLFFVNQANILEKTKLNFTDSVSSKYLF-SENININDENIEI--KKVNNFSE- 77 (812)
T ss_pred cccCCChhhHHHHHHHHHHH--hchhhEEEEecchhHHHHHHhhcccchhhhHhh-hhhhhcCCceeee--eeecccCc-
Confidence 46999999999999877754 34455666665 555544333321 1110 1112222221110 00111111
Q ss_pred CCCCCccEEEeehhhHhhhhccccchHHHHhhcC-cc-EEEEeCcccc
Q 039292 268 GLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWR-WS-CVLMDEAHAL 313 (520)
Q Consensus 268 ~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~-~~-~vIiDEaH~i 313 (520)
...+..|++||.+.+-......+++.-.+.... -. +.+-||||++
T Consensus 78 -hnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhl 124 (812)
T COG3421 78 -HNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHL 124 (812)
T ss_pred -cCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhh
Confidence 223568999999988765544444443333332 22 4456999999
No 272
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.35 E-value=2.7 Score=41.60 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=25.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
.++...+|.|||.++..++..+.. .+.++++|.-
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~---~g~~V~li~~ 108 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKK---QGKSVLLAAG 108 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEeC
Confidence 456689999999999888876643 3456777764
No 273
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.34 E-value=1.5 Score=42.02 Aligned_cols=24 Identities=17% Similarity=-0.004 Sum_probs=20.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
++.+|..+.|+|||..+.++....
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999888777654
No 274
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.26 E-value=1.2 Score=46.59 Aligned_cols=42 Identities=24% Similarity=0.235 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHhcC-C-CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-I-AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~-~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|...+..|......+ . ...|+..+.|+|||..|.+++..+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 445555555444443 2 34678999999999999999887754
No 275
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=93.20 E-value=0.14 Score=51.23 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=39.7
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC-CCCCCEEEEeCCcch
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN-NDPGPHLIVCPASVL 230 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~-~~~~~~LIV~P~sll 230 (520)
|-+-|..+|++ . . +.+++-...|+|||.+.+.-+..+.... .....+|+|+++...
T Consensus 1 l~~eQ~~~i~~-~----~--~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~a 57 (315)
T PF00580_consen 1 LTDEQRRIIRS-T----E--GPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAA 57 (315)
T ss_dssp S-HHHHHHHHS------S--SEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHH
T ss_pred CCHHHHHHHhC-C----C--CCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHH
Confidence 45778888876 2 2 2356666799999999988877765544 466789999997664
No 276
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.18 E-value=1.3 Score=50.24 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=40.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh-CCCCCCEEEEeCCc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL-NNDPGPHLIVCPAS 228 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~-~~~~~~~LIV~P~s 228 (520)
.|-|-|+.+|.+- . +.+++-..+|+|||.+.+.-+.+|... .-.+..+|+|+-+.
T Consensus 9 ~Ln~~Q~~av~~~-----~--g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~ 64 (721)
T PRK11773 9 SLNDKQREAVAAP-----L--GNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTN 64 (721)
T ss_pred hcCHHHHHHHhCC-----C--CCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccH
Confidence 5889999998632 2 346777779999999998888887642 33456688887743
No 277
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=93.13 E-value=1 Score=49.61 Aligned_cols=43 Identities=26% Similarity=0.172 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.|...++.|...+..+. ...|+....|+|||..|..++..+..
T Consensus 28 Gq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c 72 (598)
T PRK09111 28 GQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNY 72 (598)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCc
Confidence 45556666655554442 35789999999999999999887754
No 278
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.11 E-value=1.4 Score=47.70 Aligned_cols=42 Identities=24% Similarity=0.149 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcC-CCc-eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-IAG-AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~~g-~ILademGlGKTi~aia~l~~l~~ 213 (520)
|...+..|......+ ... .|+..+.|.|||..|.+++..+..
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 444455554444443 222 378999999999999998887743
No 279
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.09 E-value=0.14 Score=55.86 Aligned_cols=148 Identities=12% Similarity=0.150 Sum_probs=80.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHH----HHHhcCCCeEEEecCCCchhhhHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERE----LKKWCPSFSVLQYHGAGRTAYSRELSSL 264 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E----~~~~~p~~~v~~~~g~~~~~~~~~~~~~ 264 (520)
-+..-+=--|||..+...+..+.. ...+..+++++|. .+...-.++ +++|+|...+....|. .-. ..+
T Consensus 257 tVflVPRR~GKTwivv~iI~~ll~-s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~--i~f--- 329 (738)
T PHA03368 257 TVFLVPRRHGKTWFLVPLIALALA-TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TIS--FSF--- 329 (738)
T ss_pred eEEEecccCCchhhHHHHHHHHHH-hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEE--EEe---
Confidence 355666778999877766654432 3346778999994 333334444 4567765444333331 000 000
Q ss_pred hhcCCCCCccEEEe-ehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccC--
Q 039292 265 AKAGLPPPFNVLLV-CYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTP-- 341 (520)
Q Consensus 265 ~~~~~~~~~~vlit-ty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTP-- 341 (520)
..+ ....+.+. ++ +...+++..++++|+|||+.|+. ......+-.+.......|.+|.|-
T Consensus 330 -~nG--~kstI~FaSar------------ntNsiRGqtfDLLIVDEAqFIk~--~al~~ilp~l~~~n~k~I~ISS~Ns~ 392 (738)
T PHA03368 330 -PDG--SRSTIVFASSH------------NTNGIRGQDFNLLFVDEANFIRP--DAVQTIMGFLNQTNCKIIFVSSTNTG 392 (738)
T ss_pred -cCC--CccEEEEEecc------------CCCCccCCcccEEEEechhhCCH--HHHHHHHHHHhccCccEEEEecCCCC
Confidence 000 00123332 11 23345677899999999999964 222222222332455567776552
Q ss_pred ---------CCCCHHHHHHHHHHhCCCCC
Q 039292 342 ---------LQNDLHELWSLLEFMMPDLF 361 (520)
Q Consensus 342 ---------i~n~~~el~~ll~fl~p~~~ 361 (520)
+.|...++.+.+.|++++..
T Consensus 393 ~~sTSFL~nLk~a~~~lLNVVsYvCdeH~ 421 (738)
T PHA03368 393 KASTSFLYNLKGAADELLNVVTYICDEHM 421 (738)
T ss_pred ccchHHHHhhcCchhhheeeEEEEChhhh
Confidence 34555677777777777654
No 280
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=93.02 E-value=1.1 Score=49.15 Aligned_cols=42 Identities=19% Similarity=0.164 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhcC--CCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG--IAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~--~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|...++.+......+ .++.|+..+.|+|||..|.+++..+..
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444445555444333 134678999999999999999887743
No 281
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.98 E-value=1.2 Score=45.98 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=64.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcC
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAG 268 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~ 268 (520)
-++|...+|.|||.++..++..+.... ...++.+|+.......=.+.+..|+....+-+.
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~------------------- 198 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLTTDSYRIGGHEQLRIFGKILGVPVH------------------- 198 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEecccccccHHHHHHHHHHHcCCceE-------------------
Confidence 367889999999999988887653211 223556665433322222334333311111100
Q ss_pred CCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhh---hcCcEEEEeccCCCCC
Q 039292 269 LPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVAR---NANQRLMLTGTPLQND 345 (520)
Q Consensus 269 ~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~---~~~~rl~LTgTPi~n~ 345 (520)
.+.+...+.. ... .....++|+||.+=+.-... .....+..+.. .....++|++|-=...
T Consensus 199 -------~~~~~~~l~~-------~l~--~l~~~DlVLIDTaG~~~~d~-~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 199 -------AVKDGGDLQL-------ALA--ELRNKHMVLIDTIGMSQRDR-TVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred -------ecCCcccHHH-------HHH--HhcCCCEEEEcCCCCCcccH-HHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 0111111111 111 12346899999996553222 23333333311 1234678899987777
Q ss_pred HHHHHHHHH
Q 039292 346 LHELWSLLE 354 (520)
Q Consensus 346 ~~el~~ll~ 354 (520)
+.+.+.-+.
T Consensus 262 l~evi~~f~ 270 (374)
T PRK14722 262 LNEVVQAYR 270 (374)
T ss_pred HHHHHHHHH
Confidence 776654443
No 282
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=92.98 E-value=0.84 Score=46.64 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=36.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.++|+|...-+.+......+. ...|+..+.|+||+..|.+|+.++..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC 50 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMC 50 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcC
Confidence 367888888888877665532 34568999999999999999988865
No 283
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.85 E-value=1.2 Score=45.03 Aligned_cols=48 Identities=15% Similarity=0.026 Sum_probs=36.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHHh
Q 039292 167 VLKPYQLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKHL 214 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~~ 214 (520)
.++|+|...-+.+......+. .+.++..+.|+||+..|.+|+..+...
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~ 52 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQ 52 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 467888888877776654431 356788999999999999999888653
No 284
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.85 E-value=1.1 Score=45.50 Aligned_cols=48 Identities=19% Similarity=0.314 Sum_probs=38.7
Q ss_pred cCCcHHHHHHHHHHHHHHhcC-C-CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKG-I-AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~-~-~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
..++|+|....+.+......+ . ...++..+.|+||+..|.+|+..+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC 52 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLA 52 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhC
Confidence 368899999998888776554 2 24678999999999999999988754
No 285
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.84 E-value=1.5 Score=46.83 Aligned_cols=47 Identities=15% Similarity=0.210 Sum_probs=34.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
.+|+.++|+|||..++.++..+.. ..+++|+|.......|......+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~---~g~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAK---NQMKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECcCCHHHHHHHHHH
Confidence 578999999999999988876643 34688999886666665544444
No 286
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.81 E-value=1.6 Score=45.26 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHHh
Q 039292 171 YQLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKHL 214 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~~ 214 (520)
-|..++..+......+. ...|+..+.|+|||..|.+|+..+...
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 36666777766655542 346789999999999999999988653
No 287
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.75 E-value=2.8 Score=46.22 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=26.2
Q ss_pred HHHHHHHHhcC--CCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 176 VNFLLLLYRKG--IAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 176 v~~l~~~~~~~--~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
+..|......+ ....|+..+.|+|||..|..|+..+..
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 44444433333 145678999999999999999877743
No 288
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=92.72 E-value=1.3 Score=44.66 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=27.6
Q ss_pred CccEEEEeCccccCCcchHHHHHHHHHhh--hcCcEEEEeccCCCCCHHHHHH
Q 039292 301 RWSCVLMDEAHALKDKNSYRWKNLMSVAR--NANQRLMLTGTPLQNDLHELWS 351 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s~~~~~l~~l~~--~~~~rl~LTgTPi~n~~~el~~ 351 (520)
...+||+||+|++.... ....+..+.. ....++++|++....-...+.+
T Consensus 100 ~~~vliiDe~d~l~~~~--~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 100 GGKVIIIDEFDRLGLAD--AQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred CCeEEEEECcccccCHH--HHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 46789999999983322 2233333221 3455788888765443344433
No 289
>PRK10867 signal recognition particle protein; Provisional
Probab=92.69 E-value=2 Score=45.44 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=26.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+++....|+|||.++.-++.++... .+.++++|+=
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~--~G~kV~lV~~ 137 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK--KKKKVLLVAA 137 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh--cCCcEEEEEc
Confidence 5688899999999999988877542 2455666655
No 290
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.64 E-value=0.69 Score=52.54 Aligned_cols=54 Identities=20% Similarity=0.116 Sum_probs=39.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC-CCCCCEEEEeCC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN-NDPGPHLIVCPA 227 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~-~~~~~~LIV~P~ 227 (520)
.|-|-|+.+|.+. . +.+++-...|+|||.+.+.-+.++.... -.+..+|+++-+
T Consensus 4 ~Ln~~Q~~av~~~-----~--g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 4 HLNPEQREAVKTT-----E--GPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred ccCHHHHHHHhCC-----C--CCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 5889999999632 2 3467777799999999988888776532 244567777664
No 291
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.60 E-value=0.74 Score=48.98 Aligned_cols=35 Identities=26% Similarity=0.176 Sum_probs=25.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
++++|..++|+|||..+-++...+.. ...+++.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~---~~~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRE---SGGKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEee
Confidence 56889999999999988888877643 234555554
No 292
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.56 E-value=0.75 Score=46.95 Aligned_cols=58 Identities=19% Similarity=0.172 Sum_probs=40.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEec
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQYH 250 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~ 250 (520)
+++..=-|+|||.+..-+++++. ..+..+.+||-..-..--..++..|+....+-.|.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~k---kkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYK---KKGYKVALVCADTFRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHH---hcCCceeEEeecccccchHHHHHHHhHhhCCeeEe
Confidence 44566689999998888777764 35667788887666555666677776555555554
No 293
>PTZ00293 thymidine kinase; Provisional
Probab=92.55 E-value=1.4 Score=41.76 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=25.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS 228 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s 228 (520)
+...+||+|||...|-.+.... ..+.+++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~---~ag~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFT---YSEKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHH---HcCCceEEEEecc
Confidence 4678899999987776655442 3567889998863
No 294
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=92.53 E-value=1.1 Score=43.31 Aligned_cols=66 Identities=21% Similarity=0.210 Sum_probs=36.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch------hhHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL------ENWERELKK 239 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll------~~W~~E~~~ 239 (520)
-+|+.. +..+......+.+-+.+..+.|+|||+..=+++..+ ....-++|+.|+.++ .-|..++..
T Consensus 34 a~h~e~-l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~----~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~ 105 (269)
T COG3267 34 ADHNEA-LLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASL----NEDQVAVVVIDKPTLSDATLLEAIVADLES 105 (269)
T ss_pred hhhhHH-HHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhc----CCCceEEEEecCcchhHHHHHHHHHHHhcc
Confidence 344433 333333334443334678899999999877555433 233344467775443 336666643
No 295
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.43 E-value=3.8 Score=44.61 Aligned_cols=42 Identities=21% Similarity=0.108 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHhcC-C-CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKG-I-AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~-~-~g~ILademGlGKTi~aia~l~~l~ 212 (520)
.|...++.+......+ . ...|+..+.|+|||..|-.|+..+.
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444444444433332 2 2358999999999999998887764
No 296
>PRK05642 DNA replication initiation factor; Validated
Probab=92.39 E-value=1.4 Score=42.58 Aligned_cols=24 Identities=13% Similarity=0.081 Sum_probs=18.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
+..+|..+.|+|||.-+-++...+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~ 69 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRF 69 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999998766665444
No 297
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.37 E-value=2.6 Score=42.96 Aligned_cols=77 Identities=21% Similarity=0.180 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhcC-CCc-eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEE
Q 039292 170 PYQLVGVNFLLLLYRKG-IAG-AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVL 247 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~-~~g-~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~ 247 (520)
-.|...+..+......+ ... .|+..+.|.|||..|..++..+......... |-........-....+|++..+
T Consensus 9 ~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-----~cg~C~~c~~~~~~~hpD~~~i 83 (329)
T PRK08058 9 ALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-----PCGTCTNCKRIDSGNHPDVHLV 83 (329)
T ss_pred hhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-----CCCcCHHHHHHhcCCCCCEEEe
Confidence 34666666666555443 233 4899999999999999998877542211111 3333344433344456776665
Q ss_pred EecC
Q 039292 248 QYHG 251 (520)
Q Consensus 248 ~~~g 251 (520)
...|
T Consensus 84 ~~~~ 87 (329)
T PRK08058 84 APDG 87 (329)
T ss_pred cccc
Confidence 4443
No 298
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=92.25 E-value=2.4 Score=46.55 Aligned_cols=42 Identities=26% Similarity=0.213 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHhcC-C-CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-I-AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~-~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|...+..|......+ . +..|+..+.|.|||..|-+++..+..
T Consensus 21 qe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c 64 (563)
T PRK06647 21 QDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNC 64 (563)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcc
Confidence 334444444333333 2 23689999999999999999887743
No 299
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.24 E-value=1 Score=51.80 Aligned_cols=25 Identities=32% Similarity=0.297 Sum_probs=21.0
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~ 212 (520)
++.||..++|.|||..+-+++..+.
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 4679999999999999888776653
No 300
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.20 E-value=0.15 Score=46.90 Aligned_cols=38 Identities=29% Similarity=0.373 Sum_probs=25.4
Q ss_pred CccEEEeehhhHhhhhccccchHHHH--hhcCccEEEEeCccccC
Q 039292 272 PFNVLLVCYSLFERHSVQQKDDRKIL--KRWRWSCVLMDEAHALK 314 (520)
Q Consensus 272 ~~~vlitty~~l~~~~~~~~~~~~~l--~~~~~~~vIiDEaH~ik 314 (520)
..+|+|++|..+.... ....+ ....-.+|||||||+|-
T Consensus 119 ~adivi~~y~yl~~~~-----~~~~~~~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 119 NADIVICNYNYLFDPS-----IRKSLFGIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp G-SEEEEETHHHHSHH-----HHHHHCT--CCCEEEEETTGGGCG
T ss_pred cCCEEEeCHHHHhhHH-----HHhhhccccccCcEEEEecccchH
Confidence 3599999999987632 22222 23355789999999994
No 301
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.17 E-value=1.7 Score=44.20 Aligned_cols=46 Identities=15% Similarity=0.249 Sum_probs=35.5
Q ss_pred CcHHHHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 168 LKPYQLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
++|+|...-+-+......+. .+.|+..+.|.||+..|.+|+..+..
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC 50 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMC 50 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcC
Confidence 56777777777776665542 35568899999999999999988865
No 302
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.13 E-value=1.8 Score=47.74 Aligned_cols=149 Identities=11% Similarity=0.102 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHH----HH-----H
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERE----LK-----K 239 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E----~~-----~ 239 (520)
|+=..-|..+...+.+.. . ++.-+=|-|||..+..++..+... .+..++|.+|.. ....-.+. +. .
T Consensus 172 ~~~~~~id~~~~~fkq~~-t-V~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~ 247 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCY-T-AATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKP 247 (752)
T ss_pred hhhHHHHHHHHHHHhhcc-e-EEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHHHhcccc
Confidence 455566777888888774 3 555669999997776555555331 246789999932 22222222 22 4
Q ss_pred hcCCCe-EEEecCCCchhhhHHHHHHhhcCCC-CCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc
Q 039292 240 WCPSFS-VLQYHGAGRTAYSRELSSLAKAGLP-PPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN 317 (520)
Q Consensus 240 ~~p~~~-v~~~~g~~~~~~~~~~~~~~~~~~~-~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~ 317 (520)
|+|... +....|...... .....+.. +...+.+.+- .....++..++++|+|||+.|..
T Consensus 248 ~fp~~~~iv~vkgg~E~I~-----f~~p~gak~G~sti~F~Ar------------s~~s~RG~~~DLLIVDEAAfI~~-- 308 (752)
T PHA03333 248 WFPEEFKIVTLKGTDENLE-----YISDPAAKEGKTTAHFLAS------------SPNAARGQNPDLVIVDEAAFVNP-- 308 (752)
T ss_pred ccCCCceEEEeeCCeeEEE-----EecCcccccCcceeEEecc------------cCCCcCCCCCCEEEEECcccCCH--
Confidence 666543 222222111000 00000000 0011222111 11224556789999999999954
Q ss_pred hHHHHHHHHHhhhcCcEEEEeccCC
Q 039292 318 SYRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 318 s~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
..+.++.-+......++.+..||.
T Consensus 309 -~~l~aIlP~l~~~~~k~IiISS~~ 332 (752)
T PHA03333 309 -GALLSVLPLMAVKGTKQIHISSPV 332 (752)
T ss_pred -HHHHHHHHHHccCCCceEEEeCCC
Confidence 334444444323456666666775
No 303
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.11 E-value=1.7 Score=46.58 Aligned_cols=173 Identities=14% Similarity=0.099 Sum_probs=90.0
Q ss_pred CCCccCCcHHHHHHHHHHHHHHhcCCC-----ceEEeCCCCCCHHHHHHHHHHHH-HHhCCCCCCEEEEeCCcc-hhhHH
Q 039292 162 SDFQPVLKPYQLVGVNFLLLLYRKGIA-----GAILADEMGLGKTIQAITYLMLL-KHLNNDPGPHLIVCPASV-LENWE 234 (520)
Q Consensus 162 ~~~~~~Lr~~Q~~gv~~l~~~~~~~~~-----g~ILademGlGKTi~aia~l~~l-~~~~~~~~~~LIV~P~sl-l~~W~ 234 (520)
+++...|-|||...+.-++..+.++.+ -+++.-.=|=|||..+.+++.+. ......+..++|++|+.- ..+-.
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 666778999999999888755544422 25677788999997766554322 233466677888888532 22222
Q ss_pred HHHH---HhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcc
Q 039292 235 RELK---KWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAH 311 (520)
Q Consensus 235 ~E~~---~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH 311 (520)
..++ +-.+++.... ......+. +++............+.....+.+..+.|+||-|
T Consensus 136 ~~ar~mv~~~~~l~~~~--------------------~~q~~s~~-i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih 194 (546)
T COG4626 136 NPARDMVKRDDDLRDLC--------------------NVQTHSRT-ITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELH 194 (546)
T ss_pred HHHHHHHHhCcchhhhh--------------------ccccceeE-EEecccceeeeeeccCCCcccCCCcceEEEehhh
Confidence 2222 2112111000 00011112 2222111111111224556778899999999999
Q ss_pred ccCCcchHHHHHHH-HHhhhcCcE-EEEe--ccCCCCCHHHHHHHHHHh
Q 039292 312 ALKDKNSYRWKNLM-SVARNANQR-LMLT--GTPLQNDLHELWSLLEFM 356 (520)
Q Consensus 312 ~ikn~~s~~~~~l~-~l~~~~~~r-l~LT--gTPi~n~~~el~~ll~fl 356 (520)
...+.. ..+..+. .+..+.... +..| |-|...-+.+.+....=+
T Consensus 195 ~f~~~~-~~~~~~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k~v 242 (546)
T COG4626 195 LFGKQE-DMYSEAKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAKDV 242 (546)
T ss_pred hhcCHH-HHHHHHHhhhccCcCceEEEEecCCCCCccHHHHHHHHHHHH
Confidence 998765 3333333 332222233 3332 444444455555544444
No 304
>PRK13342 recombination factor protein RarA; Reviewed
Probab=91.98 E-value=2 Score=45.29 Aligned_cols=23 Identities=30% Similarity=0.156 Sum_probs=18.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
..+||..++|+|||..|-++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999888776543
No 305
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=91.92 E-value=1.3 Score=45.88 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=19.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
.|++|..++|+|||..|-+++..
T Consensus 157 ~gvLL~GppGtGKT~lakaia~~ 179 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLAKAVAHE 179 (364)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999988877653
No 306
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.81 E-value=0.33 Score=52.56 Aligned_cols=148 Identities=17% Similarity=0.130 Sum_probs=71.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCC-EEEEeCCc-----chhhHHHHHHHhcCCCeEE--EecCCCchhhhHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGP-HLIVCPAS-----VLENWERELKKWCPSFSVL--QYHGAGRTAYSRE 260 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~-~LIV~P~s-----ll~~W~~E~~~~~p~~~v~--~~~g~~~~~~~~~ 260 (520)
-.|+-.++|+|||.|.=-+|..--. ...+. +-+.-|.. +-.-..+|+.--.++--.+ .|.....
T Consensus 282 VLiI~GeTGSGKTTQiPQyL~EaGy--tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTS------ 353 (902)
T KOG0923|consen 282 VLIIVGETGSGKTTQIPQYLYEAGY--TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTS------ 353 (902)
T ss_pred EEEEEcCCCCCccccccHHHHhccc--ccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccC------
Confidence 4688899999999998766643211 12222 33334532 3333555553222111111 1111110
Q ss_pred HHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhh-hc-CcEEEEe
Q 039292 261 LSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVAR-NA-NQRLMLT 338 (520)
Q Consensus 261 ~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~-~~-~~rl~LT 338 (520)
...-+=.+|-++|.+.. .....--.+.+|||||||-=--..-..+-.+..++. +. -..++.|
T Consensus 354 ----------ekTvlKYMTDGmLlREf------L~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsS 417 (902)
T KOG0923|consen 354 ----------EKTVLKYMTDGMLLREF------LSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISS 417 (902)
T ss_pred ----------cceeeeeecchhHHHHH------hccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeec
Confidence 12244567778876521 111222358899999999521112223333333321 22 2346678
Q ss_pred ccCCCCCHHHHHHHHH-HhCCCC
Q 039292 339 GTPLQNDLHELWSLLE-FMMPDL 360 (520)
Q Consensus 339 gTPi~n~~~el~~ll~-fl~p~~ 360 (520)
||-=-..+.++|.-.- |..|+.
T Consensus 418 AT~DAekFS~fFDdapIF~iPGR 440 (902)
T KOG0923|consen 418 ATMDAEKFSAFFDDAPIFRIPGR 440 (902)
T ss_pred cccCHHHHHHhccCCcEEeccCc
Confidence 8875555555544322 445543
No 307
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=91.74 E-value=0.58 Score=52.44 Aligned_cols=70 Identities=16% Similarity=0.131 Sum_probs=50.5
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELK 238 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~ 238 (520)
...|+.|...+..+......+ .++++=.++|+|||+-.++.+..... ....+++|.+++. +..|-.++..
T Consensus 14 ~~~r~~Q~~~~~~v~~a~~~~-~~~~iEapTGtGKTl~yL~~al~~~~--~~~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 14 FEPRPEQREMAEAVAEALKGG-EGLLIEAPTGTGKTLAYLLPALAYAR--EEGKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCCHHHHHHHHHHHHHHcCC-CcEEEECCCCccHHHHHHHHHHHHHH--HcCCcEEEECCCHHHHHHHHHhhc
Confidence 378999999999998777766 45799999999999988777655533 2336777777765 3444444443
No 308
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=91.67 E-value=1.8 Score=43.51 Aligned_cols=127 Identities=21% Similarity=0.293 Sum_probs=71.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGL 269 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~ 269 (520)
.++..-.|.|||.+.--++.++.. .+.++++.+--.-..-=.+++..|.-.+.+-++.+.....
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~---~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~D------------- 205 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQ---QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGAD------------- 205 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHH---CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCC-------------
Confidence 456677999999887777666643 5566677666544444555566665433333333221000
Q ss_pred CCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHh-------hhcCcEEEEe--cc
Q 039292 270 PPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVA-------RNANQRLMLT--GT 340 (520)
Q Consensus 270 ~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~-------~~~~~rl~LT--gT 340 (520)
+.. +-|+.+ ..-...++|+|++|=|=|+-|.... ...|..+. ..++|.++|. ||
T Consensus 206 --pAa---VafDAi-----------~~Akar~~DvvliDTAGRLhnk~nL-M~EL~KI~rV~~k~~~~ap~e~llvlDAt 268 (340)
T COG0552 206 --PAA---VAFDAI-----------QAAKARGIDVVLIDTAGRLHNKKNL-MDELKKIVRVIKKDDPDAPHEILLVLDAT 268 (340)
T ss_pred --cHH---HHHHHH-----------HHHHHcCCCEEEEeCcccccCchhH-HHHHHHHHHHhccccCCCCceEEEEEEcc
Confidence 001 112222 2234557999999999999875532 22333332 1345555544 78
Q ss_pred CCCCCHHHH
Q 039292 341 PLQNDLHEL 349 (520)
Q Consensus 341 Pi~n~~~el 349 (520)
-=||.+...
T Consensus 269 tGqnal~QA 277 (340)
T COG0552 269 TGQNALSQA 277 (340)
T ss_pred cChhHHHHH
Confidence 777776543
No 309
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=91.62 E-value=3.2 Score=39.93 Aligned_cols=46 Identities=9% Similarity=0.070 Sum_probs=31.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWEREL 237 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 237 (520)
-.++..++|+|||..++.++..+.. .+.+++.|+......+-.+.+
T Consensus 26 ~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~e~~~~~~~~~~ 71 (230)
T PRK08533 26 LILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVSTQLTTTEFIKQM 71 (230)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHH
Confidence 3678999999999999888876643 346778888654443333333
No 310
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=91.62 E-value=0.2 Score=56.78 Aligned_cols=112 Identities=17% Similarity=0.272 Sum_probs=72.1
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-----hhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-----LENWERELKKWCPSFSVLQYHGAGRTAYSRELSS 263 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-----l~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~ 263 (520)
..++.+++|+|||+.+-..+..... ....+++.+|+|... ...|...+. .|+++++-..|.........
T Consensus 945 ~~~~g~ptgsgkt~~ae~a~~~~~~-~~p~~kvvyIap~kalvker~~Dw~~r~~--~~g~k~ie~tgd~~pd~~~v--- 1018 (1230)
T KOG0952|consen 945 NFLLGAPTGSGKTVVAELAIFRALS-YYPGSKVVYIAPDKALVKERSDDWSKRDE--LPGIKVIELTGDVTPDVKAV--- 1018 (1230)
T ss_pred hhhhcCCccCcchhHHHHHHHHHhc-cCCCccEEEEcCCchhhcccccchhhhcc--cCCceeEeccCccCCChhhe---
Confidence 3578899999999987655544433 345588999999433 344766553 35788888887765442111
Q ss_pred HhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc
Q 039292 264 LAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK 316 (520)
Q Consensus 264 ~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~ 316 (520)
...+++|||++......... ..++.+. .+..+|+||.|.++..
T Consensus 1019 -------~~~~~~ittpek~dgi~Rsw-~~r~~v~--~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1019 -------READIVITTPEKWDGISRSW-QTRKYVQ--SVSLIVLDEIHLLGED 1061 (1230)
T ss_pred -------ecCceEEcccccccCccccc-cchhhhc--cccceeecccccccCC
Confidence 13599999999876533210 1222222 3567999999998654
No 311
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.62 E-value=2.8 Score=44.25 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=25.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
.+++..+|+|||.++.-++.++.. ..+.++++|+=
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~--~~g~kV~lV~~ 136 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKK--KQGKKVLLVAC 136 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH--hCCCeEEEEec
Confidence 678999999999999988877642 12345565554
No 312
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.59 E-value=1.2 Score=51.46 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=26.9
Q ss_pred HHHHHHHHHHh-cCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 174 VGVNFLLLLYR-KGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 174 ~gv~~l~~~~~-~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
.-|+.+..... ...+..||..++|.|||..+-+++..+
T Consensus 185 ~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 185 EEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred HHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 34666765332 233467999999999999988877655
No 313
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.54 E-value=3.9 Score=43.12 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=25.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+.++...|+|||.++..++.++.. .+.++++|+-
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~---~G~kV~lV~~ 136 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR---KGFKPCLVCA 136 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCCEEEEcC
Confidence 457889999999999888877643 2446666665
No 314
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=91.50 E-value=3.5 Score=41.93 Aligned_cols=43 Identities=16% Similarity=0.121 Sum_probs=27.4
Q ss_pred cHHHHHHHHHHHHHH---hcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLY---RKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~---~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
++.....+.-++... ....+.+++..++|+|||..+.+++..+
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 30 QEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh
Confidence 344444444444332 1223468999999999999888777654
No 315
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=4.2 Score=42.18 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=74.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGL 269 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~ 269 (520)
.+++.++|.||+...+-+++.+.. .+++|+|+-.--..||.-...+..-.
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~----~~~vLYVsGEES~~QiklRA~RL~~~-------------------------- 145 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAK----RGKVLYVSGEESLQQIKLRADRLGLP-------------------------- 145 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHh----cCcEEEEeCCcCHHHHHHHHHHhCCC--------------------------
Confidence 467889999999777766666633 23999999998899998777765411
Q ss_pred CCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--------h---HHHHHHHHHhhhcCcEEEEe
Q 039292 270 PPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN--------S---YRWKNLMSVARNANQRLMLT 338 (520)
Q Consensus 270 ~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~--------s---~~~~~l~~l~~~~~~rl~LT 338 (520)
..++.+.....+.. ....+...+++++|+|=.+.+-++. | .....+..++....--+++.
T Consensus 146 --~~~l~l~aEt~~e~-------I~~~l~~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiV 216 (456)
T COG1066 146 --TNNLYLLAETNLED-------IIAELEQEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIV 216 (456)
T ss_pred --ccceEEehhcCHHH-------HHHHHHhcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 12555555555544 4556777889999999988875432 1 23445555554444455666
Q ss_pred ccC
Q 039292 339 GTP 341 (520)
Q Consensus 339 gTP 341 (520)
|-=
T Consensus 217 GHV 219 (456)
T COG1066 217 GHV 219 (456)
T ss_pred EEE
Confidence 544
No 316
>CHL00206 ycf2 Ycf2; Provisional
Probab=91.32 E-value=0.77 Score=55.96 Aligned_cols=42 Identities=17% Similarity=0.205 Sum_probs=31.3
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWE 234 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~ 234 (520)
.+|++|..++|+|||..|=|++.. ..-|.+-|....++..|.
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~e------s~VPFIsISgs~fl~~~~ 1671 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATN------SYVPFITVFLNKFLDNKP 1671 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHh------cCCceEEEEHHHHhhccc
Confidence 368999999999999988777642 345777776666676663
No 317
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.26 E-value=0.87 Score=52.63 Aligned_cols=40 Identities=15% Similarity=0.141 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHhc-CCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRK-GIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 172 Q~~gv~~l~~~~~~-~~~g~ILademGlGKTi~aia~l~~l 211 (520)
|..-|+.+...... ..+..||..++|.|||..+-+++..+
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 33347777654322 33457899999999999988877655
No 318
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=91.25 E-value=3.2 Score=45.58 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=20.4
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~ 213 (520)
..|+..+.|+|||..|-.|+..+..
T Consensus 40 ayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 40 AYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3577999999999999888876643
No 319
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.18 E-value=2 Score=47.64 Aligned_cols=43 Identities=19% Similarity=0.010 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhcC--CCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKG--IAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~--~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.|...+..|......+ ....|+..+.|+|||..|.+++..+..
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 3455555555444443 135689999999999999999987754
No 320
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=91.08 E-value=0.67 Score=42.70 Aligned_cols=34 Identities=21% Similarity=0.211 Sum_probs=24.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
+...+|++|||...|..+..+.. .+.+++++-|.
T Consensus 5 ~i~GpM~sGKS~eLi~~~~~~~~---~~~~v~~~kp~ 38 (176)
T PF00265_consen 5 FITGPMFSGKSTELIRRIHRYEI---AGKKVLVFKPA 38 (176)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHH---TT-EEEEEEES
T ss_pred EEECCcCChhHHHHHHHHHHHHh---CCCeEEEEEec
Confidence 44578999999988877765533 45678888875
No 321
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.04 E-value=6 Score=42.60 Aligned_cols=42 Identities=26% Similarity=0.177 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhcC-CCc-eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKG-IAG-AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~-~~g-~ILademGlGKTi~aia~l~~l~ 212 (520)
-|...+..+......+ ... .|+..+.|.|||..|-.++..+.
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4555556665555443 233 46899999999999988887664
No 322
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=90.93 E-value=2.1 Score=48.04 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcC-C-CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-I-AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~-~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|..+++.+......+ . +..|+..+.|.|||..|-.++..+..
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC 66 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNC 66 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 445555555444443 2 23589999999999999998877643
No 323
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=90.88 E-value=2.1 Score=42.31 Aligned_cols=157 Identities=18% Similarity=0.142 Sum_probs=83.0
Q ss_pred hhhhhccccccccccCccccCCCCCCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC
Q 039292 137 YAEVEASSVRIVTQSDIDDACGDEDSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN 216 (520)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~ 216 (520)
|......-...+............+++|..+=+--+ -+.|+......| .-+++-...|+|||-++..++
T Consensus 47 ~~~~~a~ia~~le~~~~q~~~~~~~~~~l~tkt~r~--~~~~~~~A~k~g-~l~~vyg~~g~gKt~a~~~y~-------- 115 (297)
T COG2842 47 YATNEAKIAAFLEKKGVQAALEKLAPDFLETKTVRR--IFFRTRPASKTG-SLVVVYGYAGLGKTQAAKNYA-------- 115 (297)
T ss_pred HHHHHHHHHHHHcCCCcccccccccccccccchhHh--HhhhhhhhhhcC-ceEEEeccccchhHHHHHhhc--------
Confidence 333333334444444444444434444443322222 233444444444 246788889999998776544
Q ss_pred CCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHH
Q 039292 217 DPGPHLIVCPASVLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKI 296 (520)
Q Consensus 217 ~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~ 296 (520)
+..|.-++.+.+-...-...+...+- ..+..++........ ....
T Consensus 116 ~s~p~~~l~~~~p~~~a~~~i~~i~~-------------------------------~~~~~~~~~~~d~~~----~~~~ 160 (297)
T COG2842 116 PSNPNALLIEADPSYTALVLILIICA-------------------------------AAFGATDGTINDLTE----RLMI 160 (297)
T ss_pred ccCccceeecCChhhHHHHHHHHHHH-------------------------------HHhcccchhHHHHHH----HHHH
Confidence 34455555555555544444433321 222222222222100 1111
Q ss_pred HhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCC
Q 039292 297 LKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 297 l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
.......++|+|||.++. ......++.+..++..-+.|.|+|.
T Consensus 161 ~l~~~~~~iivDEA~~L~---~~ale~lr~i~d~~Gi~~vLvG~pr 203 (297)
T COG2842 161 RLRDTVRLIIVDEADRLP---YRALEELRRIHDKTGIGVVLVGMPR 203 (297)
T ss_pred HHccCcceeeeehhhccC---hHHHHHHHHHHHhhCceEEEecChH
Confidence 114457789999999984 4456667777667777899999996
No 324
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.76 E-value=1.7 Score=52.85 Aligned_cols=64 Identities=16% Similarity=0.122 Sum_probs=42.4
Q ss_pred CccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh-CCCCCCEEEEeCCcch
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL-NNDPGPHLIVCPASVL 230 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~-~~~~~~~LIV~P~sll 230 (520)
+...|-+-|+.++..++.... +-+++..-.|+|||.+.-+++..+... ......++.++|+.-.
T Consensus 832 ~~~~Lt~~Qr~Av~~iLts~d---r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkA 896 (1623)
T PRK14712 832 LMEKLTSGQRAATRMILETSD---RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRA 896 (1623)
T ss_pred hhcccCHHHHHHHHHHHhCCC---ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHH
Confidence 344799999999987764311 236888889999998865555444322 1233457778886544
No 325
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.76 E-value=2.8 Score=47.73 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 186 GIAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 186 ~~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
..+++||..++|.|||..+-+++..+.
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999888776653
No 326
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.75 E-value=2.1 Score=43.01 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~ 213 (520)
.|+..++|.|||..|.+++..+..
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhC
Confidence 789999999999999999988754
No 327
>PRK12377 putative replication protein; Provisional
Probab=90.69 E-value=2.7 Score=40.99 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=40.9
Q ss_pred CCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHH---------HHHHHhcCCCeEEEecCC
Q 039292 186 GIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWE---------RELKKWCPSFSVLQYHGA 252 (520)
Q Consensus 186 ~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~---------~E~~~~~p~~~v~~~~g~ 252 (520)
+..+.+|..++|+|||..+.|++..+.. .+.+++++.-..++.... .++.+......++++...
T Consensus 100 ~~~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 100 GCTNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCC
Confidence 3357899999999999999999887754 234455554444444322 234444456677776654
No 328
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=90.60 E-value=0.42 Score=50.00 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=20.2
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
.|++|..++|+|||..|-+++..+
T Consensus 166 ~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 166 KGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CceEEECCCCCChHHHHHHHHHHh
Confidence 578999999999999888876543
No 329
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.60 E-value=1.4 Score=50.11 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=19.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
+.+||..++|+|||..+-++...+
T Consensus 208 ~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 208 NNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCeEEECCCCCCHHHHHHHHHHHH
Confidence 467999999999999887776544
No 330
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.53 E-value=1.8 Score=41.87 Aligned_cols=48 Identities=19% Similarity=0.176 Sum_probs=33.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
-.+++.++|+|||+.++.|+..... .+.++|+|+-.....+-.+.+..
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~---~ge~~lyvs~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGIYVALEEHPVQVRRNMAQ 70 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH---cCCcEEEEEeeCCHHHHHHHHHH
Confidence 4678999999999999988875432 46688888865444444444443
No 331
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.50 E-value=2.8 Score=41.98 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=19.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
++++|..++|+|||..+.+++..+
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~ 54 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEM 54 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 458999999999998887776543
No 332
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.43 E-value=2 Score=52.83 Aligned_cols=63 Identities=16% Similarity=0.078 Sum_probs=42.6
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC-CCCCCEEEEeCCcch
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN-NDPGPHLIVCPASVL 230 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~-~~~~~~LIV~P~sll 230 (520)
...|-+-|+.++..++... .+-++|-.-.|+|||.+.-+++..+.... .....++.++|+.-.
T Consensus 965 ~~~Lt~~Q~~Av~~il~s~---dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrA 1028 (1747)
T PRK13709 965 MEGLTSGQRAATRMILEST---DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRA 1028 (1747)
T ss_pred cCCCCHHHHHHHHHHHhCC---CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHH
Confidence 3468999999998887421 13468888899999987766665543222 223457778887544
No 333
>PRK09183 transposase/IS protein; Provisional
Probab=90.42 E-value=3 Score=40.92 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=19.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
.+++|..++|+|||..+.++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHH
Confidence 457888999999999988886544
No 334
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.37 E-value=0.77 Score=51.52 Aligned_cols=69 Identities=17% Similarity=0.109 Sum_probs=48.9
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC-CCCCCEEEEeCCcchhhHHHH-HHHhc
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN-NDPGPHLIVCPASVLENWERE-LKKWC 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~-~~~~~~LIV~P~sll~~W~~E-~~~~~ 241 (520)
..|.+-|..+|..- . +.+++-...|+|||.+.++-+.++.... ..+..+|+++.+....+..++ +....
T Consensus 195 ~~L~~~Q~~av~~~-----~--~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNG-----E--DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCC-----C--CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 47999999998522 1 3346666699999999999888776433 345679999998777665554 54444
No 335
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=90.30 E-value=1 Score=51.26 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=28.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
.|++|..++|+|||..|-+++..+ ..+++.|-+..++..|
T Consensus 488 ~giLL~GppGtGKT~lakalA~e~------~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 488 KGVLLFGPPGTGKTLLAKAVATES------GANFIAVRGPEILSKW 527 (733)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhc------CCCEEEEehHHHhhcc
Confidence 578999999999999888776533 3456666665555544
No 336
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.27 E-value=3.1 Score=46.09 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHhcC-C-CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKG-I-AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~-~-~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
-|...+..+......+ . .+.|+..+.|.|||..|..|+..+..
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3566666666555443 2 34679999999999999999887744
No 337
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.15 E-value=4.4 Score=44.82 Aligned_cols=42 Identities=24% Similarity=0.152 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhcC-CCc-eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKG-IAG-AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~-~~g-~ILademGlGKTi~aia~l~~l~ 212 (520)
.|...+..|......+ ... .|+..+.|+|||..+..++..+.
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4556666665544443 223 48899999999999999987774
No 338
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.10 E-value=8.2 Score=38.13 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=33.1
Q ss_pred CccEEEEeCccccCCcchHHHHHHHHHhh---hcCcEEEEeccCCCCCHHHHHHHHHHhCC
Q 039292 301 RWSCVLMDEAHALKDKNSYRWKNLMSVAR---NANQRLMLTGTPLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s~~~~~l~~l~~---~~~~rl~LTgTPi~n~~~el~~ll~fl~p 358 (520)
.+++||+|-+=+.-+.. .....+..+.. .....++|++|--.+...+....++-+.+
T Consensus 154 ~~D~ViIDt~Gr~~~~~-~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~ 213 (270)
T PRK06731 154 RVDYILIDTAGKNYRAS-ETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHI 213 (270)
T ss_pred CCCEEEEECCCCCcCCH-HHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCC
Confidence 58999999887653322 22233333321 12235668888877777776666554443
No 339
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.07 E-value=5.5 Score=38.25 Aligned_cols=49 Identities=6% Similarity=0.194 Sum_probs=36.1
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHh
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~ 240 (520)
-+++..++|+|||+.+..|+..... .+.++++|.=........+.+..+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCCHHHHHHHHHHC
Confidence 4678899999999999998765432 467888887766666666666554
No 340
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.06 E-value=0.42 Score=49.85 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=37.3
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHh
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~ 240 (520)
.+|.+|+.++|.|||..+.+++... ...+.=|.|.++...|..|-.+.
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~------~atff~iSassLtsK~~Ge~eK~ 233 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATES------GATFFNISASSLTSKYVGESEKL 233 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhh------cceEeeccHHHhhhhccChHHHH
Confidence 3578999999999999988877533 34567788899998887766443
No 341
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.05 E-value=5.5 Score=36.72 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=35.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHh-------CCCCCCEEEEeCCcchhhHHHHHHHhc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHL-------NNDPGPHLIVCPASVLENWERELKKWC 241 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~-------~~~~~~~LIV~P~sll~~W~~E~~~~~ 241 (520)
++++...|+|||..++.++..+... ....+++|+|....-..++.+-+....
T Consensus 35 ~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 35 TLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp EEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 5888999999999999888776531 125678999988777767777776655
No 342
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.00 E-value=4.8 Score=37.50 Aligned_cols=33 Identities=18% Similarity=0.074 Sum_probs=24.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
-+++....|-|||..|++++... -+.+.+++||
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra---~g~G~~V~iv 56 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRA---VGHGKKVGVV 56 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHH---HHCCCeEEEE
Confidence 46788899999999999887644 3355677776
No 343
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=89.92 E-value=2.6 Score=43.13 Aligned_cols=46 Identities=26% Similarity=0.147 Sum_probs=33.2
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
++|+|...-+.+.....+-..+.++..+.|.|||..|..|+..+..
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC 47 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLC 47 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4677777766666542222235568899999999999999988755
No 344
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.89 E-value=4.4 Score=42.53 Aligned_cols=62 Identities=16% Similarity=0.088 Sum_probs=37.4
Q ss_pred HhhcCccEEEEeCccccCCcchHHHHHHHHHhh------hcCcEEEEeccCCCCCHHHHHHHHHHhCCC
Q 039292 297 LKRWRWSCVLMDEAHALKDKNSYRWKNLMSVAR------NANQRLMLTGTPLQNDLHELWSLLEFMMPD 359 (520)
Q Consensus 297 l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~------~~~~rl~LTgTPi~n~~~el~~ll~fl~p~ 359 (520)
+....+++||||=+-+.-+. ......+..+.. .....++|+||-=++.+.+....+..+.++
T Consensus 295 l~~~~~D~VLIDTaGr~~rd-~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~ 362 (432)
T PRK12724 295 LARDGSELILIDTAGYSHRN-LEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYR 362 (432)
T ss_pred HHhCCCCEEEEeCCCCCccC-HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCC
Confidence 33457899999977655322 233333333321 123467899998887877777766655544
No 345
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.76 E-value=6.1 Score=43.60 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcC-CC-ceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-IA-GAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~~-g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|...++.|......+ .. ..|+..+.|.|||..+..|+..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 444455554443333 22 3478999999999999998887743
No 346
>PRK09087 hypothetical protein; Validated
Probab=89.67 E-value=3.3 Score=39.79 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=25.3
Q ss_pred cEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEecc
Q 039292 303 SCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGT 340 (520)
Q Consensus 303 ~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgT 340 (520)
++|++|+.|.+.......+..+..+. .....+++|++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~-~~g~~ilits~ 125 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR-QAGTSLLMTSR 125 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH-hCCCeEEEECC
Confidence 58999999988544555555555543 44567888776
No 347
>CHL00176 ftsH cell division protein; Validated
Probab=89.44 E-value=3.2 Score=46.21 Aligned_cols=22 Identities=32% Similarity=0.375 Sum_probs=19.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
.|++|..++|+|||..|=+++.
T Consensus 217 ~gVLL~GPpGTGKT~LAralA~ 238 (638)
T CHL00176 217 KGVLLVGPPGTGKTLLAKAIAG 238 (638)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999998877764
No 348
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.39 E-value=8.1 Score=41.83 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=22.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
.+|...+|.|||..+..++..+.. ....+.+.+|.
T Consensus 353 IaLVGPtGvGKTTtaakLAa~la~-~~~gkkVaLId 387 (559)
T PRK12727 353 IALVGPTGAGKTTTIAKLAQRFAA-QHAPRDVALVT 387 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-hcCCCceEEEe
Confidence 446678999999988777765533 22234555554
No 349
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.38 E-value=3.3 Score=40.68 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=26.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
.+++.++|+|||..++.|+..... .+.++++|+-
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~a~---~Ge~vlyis~ 72 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQAS---RGNPVLFVTV 72 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEe
Confidence 568999999999999998876532 3568888874
No 350
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.34 E-value=1.2 Score=46.23 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 175 GVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 175 gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
+|..+...- +|.+++|+ .+.|.|||..+-.++..+.
T Consensus 159 vID~l~PIG-kGQR~lIv-gppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 159 IIDLIAPIG-KGQRGLIV-APPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eeeeecccc-cCceEEEe-CCCCCChhHHHHHHHHHHH
Confidence 344443332 35456555 5599999987766655553
No 351
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.30 E-value=1.1 Score=44.33 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=36.4
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHh
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~ 240 (520)
.+|.+|..++|+||+..|-|++.. ...++.-|....++..|..|-++.
T Consensus 166 wrgiLLyGPPGTGKSYLAKAVATE------AnSTFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 166 WRGILLYGPPGTGKSYLAKAVATE------ANSTFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred ceeEEEeCCCCCcHHHHHHHHHhh------cCCceEEeehHHHHHHHhccHHHH
Confidence 468899999999999988776641 125667777778889998776554
No 352
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=89.24 E-value=3.4 Score=46.74 Aligned_cols=24 Identities=29% Similarity=0.248 Sum_probs=19.3
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~ 210 (520)
...+||..++|+|||..|-++...
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~ 75 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANH 75 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999888776643
No 353
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.21 E-value=1.5 Score=41.77 Aligned_cols=43 Identities=26% Similarity=0.377 Sum_probs=27.4
Q ss_pred cCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHH
Q 039292 300 WRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLH 347 (520)
Q Consensus 300 ~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~ 347 (520)
...+++||||++.+-. . ....+... .....+.|-|=|.|-...
T Consensus 61 ~~~~~liiDE~~~~~~--g-~l~~l~~~--~~~~~~~l~GDp~Q~~~~ 103 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPP--G-YLLLLLSL--SPAKNVILFGDPLQIPYI 103 (234)
T ss_pred CcCCEEEEeccccCCh--H-HHHHHHhh--ccCcceEEEECchhccCC
Confidence 3588999999998732 1 12223333 333468888999886543
No 354
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.20 E-value=8.2 Score=37.07 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=28.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS 228 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s 228 (520)
.+|+..+|+|||..++.++..... ....++++++...
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~--~~g~~vly~s~E~ 52 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAK--KQGKPVLFFSLEM 52 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--hCCCceEEEeCCC
Confidence 588999999999999988876643 2267889998643
No 355
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=89.14 E-value=1.5 Score=43.14 Aligned_cols=22 Identities=32% Similarity=0.249 Sum_probs=16.9
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
..++|..++|+|||..|--.+.
T Consensus 53 DHvLl~GPPGlGKTTLA~IIA~ 74 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHIIAN 74 (332)
T ss_pred CeEEeeCCCCCcHHHHHHHHHH
Confidence 3589999999999986654444
No 356
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.13 E-value=6.2 Score=41.21 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=40.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEecC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQYHG 251 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g 251 (520)
++++.=-|+|||.++.-++.++.. .+..+|+||--.-..--.++++..+-...+-+|..
T Consensus 103 ImmvGLQGsGKTTt~~KLA~~lkk---~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~ 161 (451)
T COG0541 103 ILMVGLQGSGKTTTAGKLAKYLKK---KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGS 161 (451)
T ss_pred EEEEeccCCChHhHHHHHHHHHHH---cCCceEEEecccCChHHHHHHHHHHHHcCCceecC
Confidence 456777899999999998888854 55666777765545555566666665555655554
No 357
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.13 E-value=11 Score=39.21 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=28.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC----cchhhHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA----SVLENWER 235 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~----sll~~W~~ 235 (520)
.++....|+|||.++..++..+.. .+.++.+|+-- ..+.||..
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~---~g~~V~lItaDtyR~gAveQLk~ 255 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLK---QNRTVGFITTDTFRSGAVEQFQG 255 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCccCccHHHHHHH
Confidence 457778999999998888766533 23456666542 23556644
No 358
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=89.10 E-value=4.5 Score=36.55 Aligned_cols=135 Identities=14% Similarity=0.042 Sum_probs=65.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCCeEEEecCCCc---hhhhHHHHHHh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSFSVLQYHGAGR---TAYSRELSSLA 265 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~v~~~~g~~~---~~~~~~~~~~~ 265 (520)
..+--..|.|||..|++++.... +.+.++++|-=. .-...=...+.+-+|++.+..+..... ......... .
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~---~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~-a 80 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRAL---GHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAA-A 80 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHH-H
Confidence 34556789999999988876442 345667764221 100111112233345555554332210 000000000 0
Q ss_pred hcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc----chHHHHHHHHHhhhcCcEEEEeccC
Q 039292 266 KAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK----NSYRWKNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 266 ~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~----~s~~~~~l~~l~~~~~~rl~LTgTP 341 (520)
...+.. ....+....+++||+||.=..-+. .......+..- ....-++|||--
T Consensus 81 --------------~~~~~~-------a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~r--p~~~evIlTGr~ 137 (159)
T cd00561 81 --------------AEGWAF-------AKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAK--PEDLELVLTGRN 137 (159)
T ss_pred --------------HHHHHH-------HHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcC--CCCCEEEEECCC
Confidence 011111 334456678999999998766332 22233333221 333469999976
Q ss_pred CCCCHHHHHH
Q 039292 342 LQNDLHELWS 351 (520)
Q Consensus 342 i~n~~~el~~ 351 (520)
.+..+.++-.
T Consensus 138 ~p~~l~e~AD 147 (159)
T cd00561 138 APKELIEAAD 147 (159)
T ss_pred CCHHHHHhCc
Confidence 6555544433
No 359
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=89.07 E-value=5.2 Score=38.36 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE--eCCcchhhHHHHHH
Q 039292 194 DEMGLGKTIQAITYLMLLKHLNNDPGPHLIV--CPASVLENWERELK 238 (520)
Q Consensus 194 demGlGKTi~aia~l~~l~~~~~~~~~~LIV--~P~sll~~W~~E~~ 238 (520)
..=|.|||..+++++..+.. .++++.|| =|..-+..|.+...
T Consensus 9 ~KGGaGKTT~~~~LAs~la~---~G~~V~lIDaDpn~pl~~W~~~a~ 52 (231)
T PF07015_consen 9 SKGGAGKTTAAMALASELAA---RGARVALIDADPNQPLAKWAENAQ 52 (231)
T ss_pred CCCCCcHHHHHHHHHHHHHH---CCCeEEEEeCCCCCcHHHHHHhcc
Confidence 34589999999999888744 44566666 35667889966543
No 360
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=88.95 E-value=0.66 Score=48.59 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=19.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
+|++|..++|+|||..+-+++..
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999988776653
No 361
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.90 E-value=0.84 Score=46.37 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=33.6
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhc
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWC 241 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 241 (520)
..|++|-.++|+|||..|-+.... .+.+++=|.-.++...|..|-.+.+
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Ake------aga~fInv~~s~lt~KWfgE~eKlv 175 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKE------AGANFINVSVSNLTSKWFGEAQKLV 175 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHH------cCCCcceeeccccchhhHHHHHHHH
Confidence 368899999999999988876642 2344444444566667876665543
No 362
>PRK06904 replicative DNA helicase; Validated
Probab=88.84 E-value=7.4 Score=41.79 Aligned_cols=49 Identities=18% Similarity=0.100 Sum_probs=36.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~ 240 (520)
+|||.-+|.|||.-++.++..... ..+.|+++++..--..++...+...
T Consensus 224 iiIaarPg~GKTafalnia~~~a~--~~g~~Vl~fSlEMs~~ql~~Rlla~ 272 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAM--ASEKPVLVFSLEMPAEQIMMRMLAS 272 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHH--hcCCeEEEEeccCCHHHHHHHHHHh
Confidence 589999999999998887765432 2357899998877777776665543
No 363
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=88.68 E-value=18 Score=36.64 Aligned_cols=40 Identities=15% Similarity=0.107 Sum_probs=26.1
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
+-+.|...+..+ ...+ +.++++..+|+|||..+-+++..+
T Consensus 133 ~~~~~~~~L~~~---v~~~-~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 133 MTAAQREAIIAA---VRAH-RNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCHHHHHHHHHH---HHcC-CeEEEECCCCCCHHHHHHHHHHhh
Confidence 344555444333 3334 467999999999997777766544
No 364
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=88.35 E-value=7.1 Score=40.79 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=35.9
Q ss_pred CccEEEEeCccccCCcch---HHHHHHHHHhhhcCcEEEEec--cCCCC--CHHHHHHHHHHh
Q 039292 301 RWSCVLMDEAHALKDKNS---YRWKNLMSVARNANQRLMLTG--TPLQN--DLHELWSLLEFM 356 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s---~~~~~l~~l~~~~~~rl~LTg--TPi~n--~~~el~~ll~fl 356 (520)
..++++||-.+.+.+... ..+..+..+. .....|++|+ +|-.- -..+|.+-+.+-
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~-~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G 236 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALL-ENGKQIVLTSDRPPKELNGLEDRLRSRLEWG 236 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHH-hcCCEEEEEcCCCchhhccccHHHHHHHhce
Confidence 688999999999977632 3344444443 3344888988 77543 345777766664
No 365
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=88.32 E-value=3.4 Score=38.19 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.2
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~ 213 (520)
..|+..+.|.|||..+..++..+..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4678999999999999999887743
No 366
>PRK04132 replication factor C small subunit; Provisional
Probab=88.30 E-value=2.4 Score=48.47 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=31.3
Q ss_pred CccEEEEeCccccCCcchHHHHHHHHHhh--hcCcEEEEeccCCCCCHHHHHHH
Q 039292 301 RWSCVLMDEAHALKDKNSYRWKNLMSVAR--NANQRLMLTGTPLQNDLHELWSL 352 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s~~~~~l~~l~~--~~~~rl~LTgTPi~n~~~el~~l 352 (520)
.+.++|+||||++-. ....++..+.. ....+++|+.++...-+.-+.+-
T Consensus 630 ~~KVvIIDEaD~Lt~---~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSR 680 (846)
T PRK04132 630 SFKIIFLDEADALTQ---DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR 680 (846)
T ss_pred CCEEEEEECcccCCH---HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhh
Confidence 478999999999942 23344444432 34567888888876555444443
No 367
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.29 E-value=8.5 Score=41.07 Aligned_cols=43 Identities=23% Similarity=0.096 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcC-C-CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYRKG-I-AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~-~-~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
-|...+.++......+ . +..|+..+.|+|||..|.+++..+..
T Consensus 21 Gq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 21 GQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred CcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 3556677776655544 2 34678999999999999999887743
No 368
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=88.23 E-value=2.1 Score=53.80 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=40.4
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh-CCCCCCEEEEeCCcch
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL-NNDPGPHLIVCPASVL 230 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~-~~~~~~~LIV~P~sll 230 (520)
..|-+-|+.++..++.. ..+-+++-...|+|||.+..+++..+... ...+..++.++|+.-.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~---~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIST---KDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEA 1080 (1960)
T ss_pred CCCCHHHHHHHHHHHhC---CCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 47999999999887632 11345777889999998875544333221 2234567778887543
No 369
>PF13173 AAA_14: AAA domain
Probab=88.20 E-value=2.4 Score=36.53 Aligned_cols=39 Identities=26% Similarity=0.346 Sum_probs=27.7
Q ss_pred CccEEEEeCccccCCcchHHHHHHHHHhhhc-CcEEEEeccCCC
Q 039292 301 RWSCVLMDEAHALKDKNSYRWKNLMSVARNA-NQRLMLTGTPLQ 343 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~-~~rl~LTgTPi~ 343 (520)
...+||+||+|++.+ ....++.+.... ..++++||+-..
T Consensus 61 ~~~~i~iDEiq~~~~----~~~~lk~l~d~~~~~~ii~tgS~~~ 100 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD----WEDALKFLVDNGPNIKIILTGSSSS 100 (128)
T ss_pred CCcEEEEehhhhhcc----HHHHHHHHHHhccCceEEEEccchH
Confidence 567899999999964 445555554343 568999998653
No 370
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=88.16 E-value=4.1 Score=38.83 Aligned_cols=49 Identities=16% Similarity=0.108 Sum_probs=36.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWC 241 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 241 (520)
.+++.++|+|||..++.++..... .+.++++++-.....+-.+.+..+.
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~---~g~~~~y~s~e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLK---NGEKAMYISLEEREERILGYAKSKG 67 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCHHHHHHHHHHcC
Confidence 477889999999999988765432 3678899988776666666665543
No 371
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.15 E-value=7 Score=39.94 Aligned_cols=41 Identities=24% Similarity=0.170 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~ 212 (520)
|...++.+......+. +..|+..+.|+|||..+-+++..+.
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 19 QEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444555544444432 2358899999999999988887764
No 372
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=88.04 E-value=9 Score=36.91 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=27.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHH---------hCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKH---------LNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~---------~~~~~~~~LIV~P 226 (520)
++|+.+.|+|||..++.++..+.. .....+++|+++-
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 489999999999999888766531 1224567888884
No 373
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=87.65 E-value=1.8 Score=48.57 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=45.4
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh-CCCCCCEEEEeCC-cchhhHHHHHHHhc
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL-NNDPGPHLIVCPA-SVLENWERELKKWC 241 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~-~~~~~~~LIV~P~-sll~~W~~E~~~~~ 241 (520)
|.|-|..+|.+- . +.+++-..+|+|||.+.+.-+.++... ...+..+|+|+.+ ....+-.+.+.+..
T Consensus 2 Ln~~Q~~av~~~-----~--~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEYV-----T--GPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhCC-----C--CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 678899988542 1 346777779999999999888877653 2345667777764 34444555565544
No 374
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=87.57 E-value=2.3 Score=38.95 Aligned_cols=56 Identities=23% Similarity=0.225 Sum_probs=32.5
Q ss_pred HHHHhhcCccEEEEeCccccCCcc----hHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHH
Q 039292 294 RKILKRWRWSCVLMDEAHALKDKN----SYRWKNLMSVARNANQRLMLTGTPLQNDLHELWS 351 (520)
Q Consensus 294 ~~~l~~~~~~~vIiDEaH~ikn~~----s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ 351 (520)
...+....+++||+||.-..-+.. ......+..- ...--++|||.-.+..+.++-.
T Consensus 90 ~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~r--p~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 90 KEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQER--PGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred HHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhC--CCCCEEEEECCCCCHHHHHhCc
Confidence 345666789999999997543322 2222333221 3344799999865544444433
No 375
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=87.50 E-value=1.1 Score=41.90 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=12.8
Q ss_pred EEeCCCCCCHHHHHHHH
Q 039292 191 ILADEMGLGKTIQAITY 207 (520)
Q Consensus 191 ILademGlGKTi~aia~ 207 (520)
++..-||+|||.-|+..
T Consensus 4 ~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 4 LITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEE--TTSSHHHHHHHH
T ss_pred EEEcCCCCcHhHHHHHH
Confidence 56667999999988877
No 376
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=87.49 E-value=1.2 Score=47.98 Aligned_cols=24 Identities=33% Similarity=0.344 Sum_probs=21.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
+|++|..++|+|||..+-+++..+
T Consensus 217 ~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 217 KGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred cceEEECCCCCcHHHHHHHHHHhh
Confidence 689999999999999888887765
No 377
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=87.42 E-value=13 Score=35.36 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=26.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
.+++.++|+|||..++.++..... ...++++|.-.
T Consensus 26 ~~i~G~~GsGKT~l~~~la~~~~~---~~~~v~yi~~e 60 (225)
T PRK09361 26 TQIYGPPGSGKTNICLQLAVEAAK---NGKKVIYIDTE 60 (225)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEECC
Confidence 478999999999999998876643 24667776655
No 378
>PRK04328 hypothetical protein; Provisional
Probab=87.27 E-value=4.3 Score=39.57 Aligned_cols=47 Identities=19% Similarity=0.218 Sum_probs=31.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
.+++.++|+|||+.++.|+..... .+.++++|.=.....+-.+.+..
T Consensus 26 ili~G~pGsGKT~l~~~fl~~~~~---~ge~~lyis~ee~~~~i~~~~~~ 72 (249)
T PRK04328 26 VLLSGGPGTGKSIFSQQFLWNGLQ---MGEPGVYVALEEHPVQVRRNMRQ 72 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEEeeCCHHHHHHHHHH
Confidence 568999999999999998875432 35677777654333333333333
No 379
>PRK08760 replicative DNA helicase; Provisional
Probab=87.23 E-value=5.1 Score=43.09 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=38.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWC 241 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 241 (520)
+|+|..+|.|||.-++.++..... ..+.++++++.--...+|...+....
T Consensus 232 ivIaarPg~GKTafal~iA~~~a~--~~g~~V~~fSlEMs~~ql~~Rl~a~~ 281 (476)
T PRK08760 232 IILAARPAMGKTTFALNIAEYAAI--KSKKGVAVFSMEMSASQLAMRLISSN 281 (476)
T ss_pred EEEEeCCCCChhHHHHHHHHHHHH--hcCCceEEEeccCCHHHHHHHHHHhh
Confidence 588999999999999988865532 23568999988777788887776554
No 380
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=87.01 E-value=2.8 Score=40.64 Aligned_cols=37 Identities=24% Similarity=0.296 Sum_probs=26.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE--eCCcch
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV--CPASVL 230 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV--~P~sll 230 (520)
|..--=|.|||..+.++...|.. .+.++|+| +|.+++
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~---~G~~VlaID~dpqN~L 44 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALAR---LGESVLAIDLDPQNLL 44 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHH---CCCcEEEEeCCcHHHH
Confidence 44455699999999999988854 55677776 665544
No 381
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=86.96 E-value=5.8 Score=37.21 Aligned_cols=36 Identities=11% Similarity=0.044 Sum_probs=27.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS 228 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s 228 (520)
..+..++|+|||..++.++..... ...++++|.-..
T Consensus 15 ~~i~G~~GsGKT~l~~~~~~~~~~---~g~~v~yi~~e~ 50 (209)
T TIGR02237 15 TQIYGPPGSGKTNICMILAVNAAR---QGKKVVYIDTEG 50 (209)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCC
Confidence 467889999999999988876643 356778877755
No 382
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=86.92 E-value=2.2 Score=45.90 Aligned_cols=58 Identities=16% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHh----cCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCC-EEEEeCC
Q 039292 170 PYQLVGVNFLLLLYR----KGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGP-HLIVCPA 227 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~----~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~-~LIV~P~ 227 (520)
|+|...+..++.... ..++-++|.-.=|-|||..+.+++.+.....+..++ ++++++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 678877776653211 112346777788999998877766555444444444 5566663
No 383
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=86.76 E-value=0.77 Score=51.60 Aligned_cols=55 Identities=20% Similarity=0.144 Sum_probs=40.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh-CCCCCCEEEEeCCc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL-NNDPGPHLIVCPAS 228 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~-~~~~~~~LIV~P~s 228 (520)
.|-|-|..+|.+- . +.+++...+|+|||.+.+.-+.++... ...+..+|+|+.+.
T Consensus 2 ~Ln~~Q~~av~~~-----~--g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~ 57 (672)
T PRK10919 2 RLNPGQQQAVEFV-----T--GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTN 57 (672)
T ss_pred CCCHHHHHHHhCC-----C--CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechH
Confidence 4778999998642 2 346777779999999999988887653 33456788888743
No 384
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.61 E-value=4.2 Score=43.58 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=18.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~ 212 (520)
..|...+|.|||.++.-++..+.
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHH
Confidence 34778999999998887776653
No 385
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=86.47 E-value=1.3 Score=47.89 Aligned_cols=63 Identities=21% Similarity=0.202 Sum_probs=41.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh---CCCCCCEEEEeCCcchhhHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL---NNDPGPHLIVCPASVLENWER 235 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~---~~~~~~~LIV~P~sll~~W~~ 235 (520)
++.+-|-+.+++= .+ +-.|+....|+|||..|+-=+++|... ....+++||+.|+.+......
T Consensus 212 TIQkEQneIIR~e-----k~-~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 212 TIQKEQNEIIRFE-----KN-KILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred HhhHhHHHHHhcc-----CC-CeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 4555566555432 12 236788899999998887666665443 335678999999887655443
No 386
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=86.45 E-value=8.5 Score=39.98 Aligned_cols=59 Identities=19% Similarity=0.243 Sum_probs=38.5
Q ss_pred CccEEEEeCccccCCcchHHHHHHHHH---hhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCC
Q 039292 301 RWSCVLMDEAHALKDKNSYRWKNLMSV---ARNANQRLMLTGTPLQNDLHELWSLLEFMMPDL 360 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s~~~~~l~~l---~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~ 360 (520)
..++|.+|=+=+---... ....+..+ ......-+.||+|-=.+.+.+.+..+..+...-
T Consensus 281 ~~d~ILVDTaGrs~~D~~-~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~ 342 (407)
T COG1419 281 DCDVILVDTAGRSQYDKE-KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDG 342 (407)
T ss_pred cCCEEEEeCCCCCccCHH-HHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcce
Confidence 468999996654322122 22223333 223455788999999999999999998887653
No 387
>PRK05748 replicative DNA helicase; Provisional
Probab=86.30 E-value=9.6 Score=40.63 Aligned_cols=47 Identities=17% Similarity=0.068 Sum_probs=34.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
.|+|..+|.|||.-++.++..... ..+.++++++..-.-.+....+.
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~--~~g~~v~~fSlEms~~~l~~R~l 252 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVAT--KTDKNVAIFSLEMGAESLVMRML 252 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHH--hCCCeEEEEeCCCCHHHHHHHHH
Confidence 589999999999999998876532 23568889887666666555553
No 388
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=86.24 E-value=2.6 Score=44.04 Aligned_cols=134 Identities=13% Similarity=0.115 Sum_probs=63.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC--cchhhHHHHHHHhcCCCeEE-EecCCCchhhhHHHHHHhh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA--SVLENWERELKKWCPSFSVL-QYHGAGRTAYSRELSSLAK 266 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~--sll~~W~~E~~~~~p~~~v~-~~~g~~~~~~~~~~~~~~~ 266 (520)
.++...-|+|||..++..+............+||+-|. ++..+-..++....+.+.+. .+...... . .+..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~-~--~i~~--- 77 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSS-M--EIKI--- 77 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCc-c--EEEe---
Confidence 35666799999987765554433322245667777773 34444444444333221110 01100000 0 0000
Q ss_pred cCCCCCccEEEeehhhHhhhhccccchHHHHhhc-CccEEEEeCccccCCcchHHHHHHHHHhh-hcCcEEEEeccCCC
Q 039292 267 AGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRW-RWSCVLMDEAHALKDKNSYRWKNLMSVAR-NANQRLMLTGTPLQ 343 (520)
Q Consensus 267 ~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~-~~~~vIiDEaH~ikn~~s~~~~~l~~l~~-~~~~rl~LTgTPi~ 343 (520)
...+..|++-+- .++...+.+. .++++++|||..+. .....+.+..+.. .+..++.+|.||-.
T Consensus 78 --~~~g~~i~f~g~----------~d~~~~ik~~~~~~~~~idEa~~~~--~~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 78 --LNTGKKFIFKGL----------NDKPNKLKSGAGIAIIWFEEASQLT--FEDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred --cCCCeEEEeecc----------cCChhHhhCcceeeeehhhhhhhcC--HHHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 000112222211 0123334443 35899999999984 2333333334421 22235999999964
No 389
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=85.96 E-value=13 Score=33.52 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=34.1
Q ss_pred cCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCC
Q 039292 300 WRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 300 ~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p 358 (520)
..+++||+|=...+.+ ... .+..+ .....+++..+|-...+.+...++.++..
T Consensus 66 ~~yD~VIiD~pp~~~~---~~~-~~~~~--~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 66 GELDYLVIDMPPGTGD---EHL-TLAQS--LPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred CCCCEEEEeCCCCCcH---HHH-HHHhc--cCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 4799999998876521 111 11111 23456666768888888888888887754
No 390
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=85.73 E-value=4.7 Score=45.20 Aligned_cols=57 Identities=18% Similarity=0.262 Sum_probs=34.9
Q ss_pred hHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCC
Q 039292 293 DRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFAT 363 (520)
Q Consensus 293 ~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~ 363 (520)
+...++..+||..|.+....++...+. .. +.++++++.....+|-. +..+-|++-|.
T Consensus 464 d~allrpGRfdr~i~i~~p~~~~r~~i-----~~--------~h~~~~~~~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 464 DPALLRPGRFDRQIQIDLPDVKGRASI-----LK--------VHLRKKKLDDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CHHhcCCCccccceeccCCchhhhHHH-----HH--------HHhhccCCCcchhhHHH-HHhcCCCCcHH
Confidence 667788889999998877766544331 11 22334444444445544 77777776654
No 391
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=85.49 E-value=12 Score=38.17 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=33.5
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
++|+|...-+-+.....+-....|+..+.|.|||..|..++..+..
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC 47 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQALLC 47 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHHcC
Confidence 4677777766666553333235678999999999999999887754
No 392
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=85.28 E-value=1.3 Score=40.91 Aligned_cols=36 Identities=22% Similarity=0.085 Sum_probs=25.9
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
..|.+|..++|.|||..|++++..+.. .+.+++.+.
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~---~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIR---KGYSVLFIT 82 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHH---TT--EEEEE
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhcc---CCcceeEee
Confidence 367899999999999999999877754 345566654
No 393
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=84.90 E-value=11 Score=47.56 Aligned_cols=153 Identities=17% Similarity=0.106 Sum_probs=83.0
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh-HHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN-WERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~-W~~E~~~~~p~~ 244 (520)
..|-+-|..+|..++.. +.+-+||-...|+|||..+-+++..+. ..+..+++++|+.-..+ ..++...-.
T Consensus 428 ~~Ls~~Q~~Av~~il~s---~~~v~ii~G~aGTGKTt~l~~l~~~~~---~~G~~V~~lAPTgrAA~~L~e~~g~~A--- 498 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTS---TKRFIIINGFGGTGSTEIAQLLLHLAS---EQGYEIQIITAGSLSAQELRQKIPRLA--- 498 (1960)
T ss_pred CCCCHHHHHHHHHHHhC---CCCeEEEEECCCCCHHHHHHHHHHHHH---hcCCeEEEEeCCHHHHHHHHHHhcchh---
Confidence 36889999999877643 212368888899999987766665543 24578999999765443 322211100
Q ss_pred eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHH
Q 039292 245 SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNL 324 (520)
Q Consensus 245 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l 324 (520)
......+..+.. ..-..|...|.. . . ..-..-++||||||..+ .+.....+
T Consensus 499 ----------~Ti~~~l~~l~~-------~~~~~tv~~fl~-----~-~---~~l~~~~vlIVDEAsMl---~~~~~~~L 549 (1960)
T TIGR02760 499 ----------STFITWVKNLFN-------DDQDHTVQGLLD-----K-S---SPFSNKDIFVVDEANKL---SNNELLKL 549 (1960)
T ss_pred ----------hhHHHHHHhhcc-------cccchhHHHhhc-----c-c---CCCCCCCEEEEECCCCC---CHHHHHHH
Confidence 000000000000 000011111110 0 0 00124679999999998 44445555
Q ss_pred HHHhhhcCcEEEEeccCCCCCHHHHHHHHHHh
Q 039292 325 MSVARNANQRLMLTGTPLQNDLHELWSLLEFM 356 (520)
Q Consensus 325 ~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl 356 (520)
...+....-+++|-|=+-|-...+-=+.|..|
T Consensus 550 l~~a~~~garvVlvGD~~QL~sV~aG~~f~~L 581 (1960)
T TIGR02760 550 IDKAEQHNSKLILLNDSAQRQGMSAGSAIDLL 581 (1960)
T ss_pred HHHHhhcCCEEEEEcChhhcCccccchHHHHH
Confidence 55444566789988887765544433334433
No 394
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.82 E-value=11 Score=39.73 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=33.5
Q ss_pred CccEEEEeCccccCCcchHHHHHHHHHhh---hcCcEEEEeccCCCCCHHHHHHHHHHhCCC
Q 039292 301 RWSCVLMDEAHALKDKNSYRWKNLMSVAR---NANQRLMLTGTPLQNDLHELWSLLEFMMPD 359 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s~~~~~l~~l~~---~~~~rl~LTgTPi~n~~~el~~ll~fl~p~ 359 (520)
.++.++||.+=+..+ .......+..+.. .....++|++|--.+.+.+....+..+.+.
T Consensus 269 ~~d~VLIDTaGrsqr-d~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~~ 329 (420)
T PRK14721 269 GKHMVLIDTVGMSQR-DQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGIH 329 (420)
T ss_pred CCCEEEecCCCCCcc-hHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCCC
Confidence 467888888644332 2223344444421 224457799998777777777666555443
No 395
>CHL00195 ycf46 Ycf46; Provisional
Probab=84.78 E-value=1.3 Score=47.57 Aligned_cols=34 Identities=24% Similarity=0.194 Sum_probs=25.2
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
+|++|..++|+|||..|=+++..+ ..|++.+-+.
T Consensus 260 kGILL~GPpGTGKTllAkaiA~e~------~~~~~~l~~~ 293 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTAKAIANDW------QLPLLRLDVG 293 (489)
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh------CCCEEEEEhH
Confidence 589999999999999887776543 3455655544
No 396
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=84.71 E-value=4.6 Score=43.57 Aligned_cols=48 Identities=15% Similarity=0.213 Sum_probs=36.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~ 240 (520)
.++..++|+|||+.++.|+..... .+.++++|.---...+-.+....+
T Consensus 266 ~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 266 ILATGATGTGKTLLVSKFLENACA---NKERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEEeeCCHHHHHHHHHHc
Confidence 678999999999999999876643 356788888766666666666554
No 397
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=84.60 E-value=7.5 Score=45.06 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=19.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
..++..++|.|||..|-++...+
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 36799999999999998888766
No 398
>PHA02542 41 41 helicase; Provisional
Probab=84.57 E-value=8.8 Score=41.21 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=32.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWEREL 237 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 237 (520)
+|+|..||.|||..++.++.... ..+.++|++.----..++...+
T Consensus 193 iiIaarPgmGKTtfalniA~~~a---~~g~~Vl~fSLEM~~~ql~~Rl 237 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYL---QQGYNVLYISMEMAEEVIAKRI 237 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHH---hcCCcEEEEeccCCHHHHHHHH
Confidence 68999999999999999886653 2467888886544444544444
No 399
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=84.42 E-value=14 Score=31.31 Aligned_cols=58 Identities=19% Similarity=0.209 Sum_probs=35.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEecCC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQYHGA 252 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~~g~ 252 (520)
+++....|.|||..+..+...+.. ...++++|---. ..+.+++..+......++..|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~---~g~~V~~id~D~--~~~~~~~~~~~~~~~~~i~~g~ 59 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAE---KGKPVLAIDADP--DDLPERLSVEVGEIKLLLVMGM 59 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCc--hhhHHHHhhccCCceEEEEecc
Confidence 467788999999998888777643 345566554322 5566666655543333234443
No 400
>PHA00012 I assembly protein
Probab=84.36 E-value=2.2 Score=42.96 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=15.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHH
Q 039292 191 ILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l 211 (520)
++..-+|+|||+-|++-|...
T Consensus 5 lITGkPGSGKSl~aV~~I~~~ 25 (361)
T PHA00012 5 VVTGKLGAGKTLVAVSRIQDK 25 (361)
T ss_pred EEecCCCCCchHHHHHHHHHH
Confidence 456679999999998855433
No 401
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=84.16 E-value=2.1 Score=40.89 Aligned_cols=51 Identities=20% Similarity=0.115 Sum_probs=36.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhc
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWC 241 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 241 (520)
-.+++.++|+|||+.++.|+...... .+.++++|+-.....++.+.+..+.
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~--~ge~vlyvs~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKN--FGEKVLYVSFEEPPEELIENMKSFG 71 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHH--HT--EEEEESSS-HHHHHHHHHTTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhh--cCCcEEEEEecCCHHHHHHHHHHcC
Confidence 36788899999999999988755431 1567899987777777777777654
No 402
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=84.15 E-value=31 Score=36.84 Aligned_cols=43 Identities=16% Similarity=0.234 Sum_probs=26.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
..+++..|.|+|||..|-++-.. ..+..+|+++|--..+-..|
T Consensus 162 ~~vli~Ge~GtGK~~lA~~ih~~---s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 162 ISVLINGESGTGKELVAHALHRH---SPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred CeEEEEeCCCCcHHHHHHHHHhc---CCCCCCCeEeeeCCCCCHHH
Confidence 46899999999999765543321 23355676666444443333
No 403
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=84.13 E-value=14 Score=39.17 Aligned_cols=47 Identities=19% Similarity=0.129 Sum_probs=33.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
.+++..+|.|||.-++.++..... ..+.++++++..--..+....+.
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~--~~g~~vl~~SlEm~~~~i~~R~~ 244 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAI--KEGKPVAFFSLEMSAEQLAMRML 244 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHH--hCCCeEEEEeCcCCHHHHHHHHH
Confidence 588999999999999988876532 23468899888655555444443
No 404
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=84.04 E-value=17 Score=36.77 Aligned_cols=42 Identities=17% Similarity=0.336 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|..++..+......+. ...|+..+.|.||+..|.+|+..+..
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc 52 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLS 52 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 5556666665555442 46788999999999999999988754
No 405
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=83.98 E-value=9.7 Score=40.20 Aligned_cols=46 Identities=17% Similarity=0.203 Sum_probs=33.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWEREL 237 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 237 (520)
.|+|..+|.|||..++.++..... ..+.++++++.-.-..+....+
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~--~~g~~v~~fSlEm~~~~l~~Rl 242 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVAL--REGKPVLFFSLEMSAEQLGERL 242 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHH
Confidence 589999999999999988865532 2467899998655555544443
No 406
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=83.91 E-value=0.54 Score=47.34 Aligned_cols=54 Identities=19% Similarity=0.043 Sum_probs=32.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
..-+-|..=+..+....-. .| | .+-|+|||+.|.+....... .+..+++|+.=|
T Consensus 128 ~kt~~Q~~y~eai~~~di~--fG-i--GpAGTGKTyLava~av~al~-~~~v~rIiLtRP 181 (348)
T COG1702 128 PKTPGQNMYPEAIEEHDIV--FG-I--GPAGTGKTYLAVAKAVDALG-AGQVRRIILTRP 181 (348)
T ss_pred ecChhHHHHHHHHHhcCee--ee-e--cccccCChhhhHHhHhhhhh-hcccceeeecCc
Confidence 3556888777766532110 11 1 28899999988887765443 445556555555
No 407
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.87 E-value=23 Score=39.43 Aligned_cols=41 Identities=20% Similarity=0.160 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcC-CC-ceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG-IA-GAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~-~~-g~ILademGlGKTi~aia~l~~l~ 212 (520)
|...+..+......+ .. ..|+..+.|.|||..|..++..+.
T Consensus 22 q~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 22 QEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 444444444443333 22 368999999999998888777663
No 408
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=83.81 E-value=3.6 Score=40.41 Aligned_cols=49 Identities=18% Similarity=0.103 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
|+...-+..+......+ ..++|..++|+|||..|-++...+ +.|++.++
T Consensus 5 ~~~~~l~~~~l~~l~~g-~~vLL~G~~GtGKT~lA~~la~~l------g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSG-YPVHLRGPAGTGKTTLAMHVARKR------DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcC-CeEEEEcCCCCCHHHHHHHHHHHh------CCCEEEEe
Confidence 34444455555444455 467999999999999988876532 45666664
No 409
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=83.67 E-value=2.1 Score=46.04 Aligned_cols=42 Identities=24% Similarity=0.160 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhcC--CCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKG--IAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~--~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|...+..|......+ ..+-++...=|.|||..|=-++..+..
T Consensus 21 Qe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC 64 (515)
T COG2812 21 QEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNC 64 (515)
T ss_pred cHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcC
Confidence 444444444333332 145678889999999988777776644
No 410
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=83.61 E-value=3.6 Score=41.78 Aligned_cols=41 Identities=15% Similarity=0.176 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
.+.+.|...+..+. ..+ .++|++..||+|||...-+++..+
T Consensus 128 ~~~~~~~~~L~~~v---~~~-~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 128 IMTEAQASVIRSAI---DSR-LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCCHHHHHHHHHHH---HcC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence 35566665544444 344 467999999999999887777655
No 411
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=83.42 E-value=5.3 Score=41.63 Aligned_cols=25 Identities=20% Similarity=0.274 Sum_probs=16.5
Q ss_pred CCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 186 GIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 186 ~~~g~ILademGlGKTi~aia~l~~l 211 (520)
|..+ ++..++|+|||..+-.++..+
T Consensus 168 Gq~~-~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 168 GQRG-LIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCEE-EEECCCCCChhHHHHHHHHhh
Confidence 4344 555669999998766655444
No 412
>PHA02244 ATPase-like protein
Probab=83.41 E-value=11 Score=39.02 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=19.3
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
..++|..++|+|||..|-++...
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999988877654
No 413
>CHL00095 clpC Clp protease ATP binding subunit
Probab=83.38 E-value=8.5 Score=44.44 Aligned_cols=42 Identities=24% Similarity=0.149 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHh---cC-------CCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 171 YQLVGVNFLLLLYR---KG-------IAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~---~~-------~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
-|..++..+..... .| .+..++..++|.|||..|-+++..+.
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 47777777654332 11 12368999999999999988887663
No 414
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=83.34 E-value=2.8 Score=41.29 Aligned_cols=42 Identities=31% Similarity=0.205 Sum_probs=31.2
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
.+.+.|.+.+.++.. ...+-++++.++|+|||...-+++..+
T Consensus 63 g~~~~~~~~l~~~~~---~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 63 GLKPENLEIFRKLLE---KPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCCHHHHHHHHHHHh---cCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 356788888877763 222337899999999999888887655
No 415
>PRK05973 replicative DNA helicase; Provisional
Probab=83.19 E-value=3 Score=40.37 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=33.4
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
-.+++..+|+|||+.++.|+..... .+.++++++-.-.-.+-.+.+..
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~---~Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMK---SGRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh---cCCeEEEEEEeCCHHHHHHHHHH
Confidence 4688999999999999998876543 35678888764444443333333
No 416
>PRK10865 protein disaggregation chaperone; Provisional
Probab=83.16 E-value=8.3 Score=44.66 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
..++..++|+|||..|-++...+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36889999999999998887665
No 417
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=83.16 E-value=1.6 Score=47.25 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.0
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
+|+||..++|+|||..+=+++.
T Consensus 89 ~giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 89 KGVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999998877764
No 418
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=83.10 E-value=14 Score=37.42 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=35.5
Q ss_pred HHHHHHHH--HHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 174 VGVNFLLL--LYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 174 ~gv~~l~~--~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
.++..++. -+..| +-..++.++|+|||..++.++..... ..+++++|........
T Consensus 41 ~~LD~~Lg~GGlp~G-~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 41 LSLDLALGVGGLPRG-RIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDP 97 (321)
T ss_pred HHHHHHhcCCCCcCC-eEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhHH
Confidence 45555552 12222 23568899999999999988876643 3677788866555444
No 419
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=83.00 E-value=6.1 Score=40.31 Aligned_cols=24 Identities=33% Similarity=0.246 Sum_probs=18.5
Q ss_pred cCCCceEEeCCCCCCHHHHHHHHH
Q 039292 185 KGIAGAILADEMGLGKTIQAITYL 208 (520)
Q Consensus 185 ~~~~g~ILademGlGKTi~aia~l 208 (520)
......||...+|.|||..|=.++
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia 183 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIA 183 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHH
Confidence 445678999999999998664443
No 420
>PRK08840 replicative DNA helicase; Provisional
Probab=82.76 E-value=15 Score=39.33 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=35.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
+|||.-+|.|||.-++.++..... ..+.|+++....--..++...+..
T Consensus 220 iviaarPg~GKTafalnia~~~a~--~~~~~v~~fSlEMs~~ql~~Rlla 267 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAM--DQDKPVLIFSLEMPAEQLMMRMLA 267 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHH--hCCCeEEEEeccCCHHHHHHHHHH
Confidence 588999999999998877765532 235689999887666666655443
No 421
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=82.36 E-value=8.6 Score=39.07 Aligned_cols=50 Identities=10% Similarity=0.198 Sum_probs=24.2
Q ss_pred HHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcC-cE-EEEeccCCCCC
Q 039292 294 RKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNAN-QR-LMLTGTPLQND 345 (520)
Q Consensus 294 ~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~-~r-l~LTgTPi~n~ 345 (520)
...+.+..++++|+||+-.+... .....+........ .. ++.|.||-.++
T Consensus 90 ~~~~~G~~~~~i~iDE~~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~p~~~~~ 141 (384)
T PF03237_consen 90 GDNIRGFEYDLIIIDEAAKVPDD--AFSELIRRLRATWGGSIRMYISTPPNPGG 141 (384)
T ss_dssp HHHHHTS--SEEEEESGGGSTTH--HHHHHHHHHHHCSTT--EEEEEE---SSS
T ss_pred cccccccccceeeeeecccCchH--HHHHHHHhhhhcccCcceEEeecCCCCCC
Confidence 35577789999999998877543 22233333322222 22 25566665544
No 422
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=82.31 E-value=1.6 Score=46.30 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=19.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
.|++|..++|+|||..|=+++..
T Consensus 218 ~gVLL~GPPGTGKT~LAraIA~e 240 (438)
T PTZ00361 218 KGVILYGPPGTGKTLLAKAVANE 240 (438)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58899999999999988777654
No 423
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=82.19 E-value=61 Score=36.63 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=24.2
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
..+++..|+|+|||..|-++-.. .....+|++.|-
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~---s~r~~~~~v~i~ 434 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNL---SGRNNRRMVKMN 434 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHh---cCCCCCCeEEEe
Confidence 46899999999999977665332 133556776653
No 424
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=82.04 E-value=70 Score=34.72 Aligned_cols=40 Identities=18% Similarity=0.167 Sum_probs=26.5
Q ss_pred cCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 185 KGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 185 ~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
.....++|-.|+|+|||..|-++-.. ..+..+|++.|--.
T Consensus 208 ~~~~pVlI~Ge~GtGK~~~A~~ih~~---s~r~~~p~v~v~c~ 247 (509)
T PRK05022 208 ASDLNVLILGETGVGKELVARAIHAA---SPRADKPLVYLNCA 247 (509)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHh---CCcCCCCeEEEEcc
Confidence 34356899999999999987665432 23355676666433
No 425
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=82.00 E-value=2.3 Score=43.61 Aligned_cols=61 Identities=15% Similarity=0.191 Sum_probs=36.7
Q ss_pred CCccCCcHHHHHHHHHHHHHHhc---CCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc
Q 039292 163 DFQPVLKPYQLVGVNFLLLLYRK---GIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV 229 (520)
Q Consensus 163 ~~~~~Lr~~Q~~gv~~l~~~~~~---~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl 229 (520)
++.+++..- +|..-+..+.+. ..++.|++.++|+|||..|+++...| +...|+..++-.-+
T Consensus 25 GlVGQ~~AR--eAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eL----G~~~PF~~isgSEi 88 (398)
T PF06068_consen 25 GLVGQEKAR--EAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKEL----GEDVPFVSISGSEI 88 (398)
T ss_dssp TEES-HHHH--HHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHC----TTTS-EEEEEGGGG
T ss_pred cccChHHHH--HHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHh----CCCCCeeEccccee
Confidence 444555443 333334444433 33678999999999999999887654 45678777776443
No 426
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=81.88 E-value=6.1 Score=39.29 Aligned_cols=36 Identities=14% Similarity=0.115 Sum_probs=24.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+++...+|+|||.++..++..+.... ...++.+|.-
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~~-g~~~V~li~~ 232 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEH-GNKKVALITT 232 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHc-CCCeEEEEEC
Confidence 55778999999999988887764321 2245555553
No 427
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=81.50 E-value=21 Score=36.37 Aligned_cols=43 Identities=26% Similarity=0.283 Sum_probs=26.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
..++|-.|+|+||+..|-++-. . ..+..+|++.|--..+-..|
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~-~--s~r~~~pfv~vnc~~~~~~~ 65 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHY-L--SKRWQGPLVKLNCAALSENL 65 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHH-h--cCccCCCeEEEeCCCCChHH
Confidence 5689999999999987654322 1 23355676666433333333
No 428
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=81.49 E-value=7 Score=38.16 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=31.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
+++|..+|.|||.-++.++..+... ...++++++..-.-.+
T Consensus 22 ~vi~a~pg~GKT~~~l~ia~~~a~~--~~~~vly~SlEm~~~~ 62 (259)
T PF03796_consen 22 TVIAARPGVGKTAFALQIALNAALN--GGYPVLYFSLEMSEEE 62 (259)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--TSSEEEEEESSS-HHH
T ss_pred EEEEecccCCchHHHHHHHHHHHHh--cCCeEEEEcCCCCHHH
Confidence 6899999999999999988766542 2479999998655544
No 429
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.24 E-value=11 Score=40.42 Aligned_cols=60 Identities=15% Similarity=0.266 Sum_probs=36.3
Q ss_pred hcCccEEEEeCccccCC---cch--HHHHHHHHHh------hhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCC
Q 039292 299 RWRWSCVLMDEAHALKD---KNS--YRWKNLMSVA------RNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFAT 363 (520)
Q Consensus 299 ~~~~~~vIiDEaH~ikn---~~s--~~~~~l~~l~------~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~ 363 (520)
...+.+|+|||...+.. +.. ...+.+.++. .+..-.|++-||-+...+.- .+++|+.|..
T Consensus 394 ~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~-----AL~RPGRFD~ 464 (752)
T KOG0734|consen 394 ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK-----ALTRPGRFDR 464 (752)
T ss_pred hcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH-----HhcCCCccce
Confidence 33566778899998853 222 2223333332 13455899999977666554 3678887744
No 430
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=81.00 E-value=2.2 Score=43.38 Aligned_cols=52 Identities=17% Similarity=0.113 Sum_probs=36.3
Q ss_pred CCCCCccCCcHHHHHHH-HHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 160 EDSDFQPVLKPYQLVGV-NFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 160 ~~~~~~~~Lr~~Q~~gv-~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
...++..+.+.--..|| --|...-+.+.+|++++.++|+|||..|+++...|
T Consensus 37 ~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 37 IGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred cCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHh
Confidence 34566666666655554 33444443445789999999999999999988765
No 431
>PRK09165 replicative DNA helicase; Provisional
Probab=80.99 E-value=24 Score=38.18 Aligned_cols=51 Identities=18% Similarity=0.075 Sum_probs=35.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCC------------CCCCEEEEeCCcchhhHHHHHHHh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNN------------DPGPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~------------~~~~~LIV~P~sll~~W~~E~~~~ 240 (520)
+|+|.-+|.|||.-++.++........ .+.++|++..--...++...+...
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~ 282 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSE 282 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHH
Confidence 589999999999999888765533211 256888888766666665555443
No 432
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=80.62 E-value=9.5 Score=40.00 Aligned_cols=110 Identities=15% Similarity=0.144 Sum_probs=59.2
Q ss_pred HHHHHHHhcCCCe-EEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhc---CccEEEEe
Q 039292 233 WERELKKWCPSFS-VLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRW---RWSCVLMD 308 (520)
Q Consensus 233 W~~E~~~~~p~~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~---~~~~vIiD 308 (520)
|...+.++.+... +.++.|..+......+..+.+..... ++.....-+........+....+... .-.++++|
T Consensus 25 ~~~~l~~~~~~~~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLD 101 (398)
T COG1373 25 LLPRLIKKLDLRPFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLD 101 (398)
T ss_pred hhHHHHhhcccCCcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEe
Confidence 4444444444444 77778887776666665555444322 34443333322211111122222222 23599999
Q ss_pred CccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHH
Q 039292 309 EAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHEL 349 (520)
Q Consensus 309 EaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el 349 (520)
|+|++++ +..+++.+.......+++||+-......+.
T Consensus 102 EIq~v~~----W~~~lk~l~d~~~~~v~itgsss~ll~~~~ 138 (398)
T COG1373 102 EIQNVPD----WERALKYLYDRGNLDVLITGSSSSLLSKEI 138 (398)
T ss_pred cccCchh----HHHHHHHHHccccceEEEECCchhhhccch
Confidence 9999976 556777765444436788887654444443
No 433
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=80.31 E-value=16 Score=41.53 Aligned_cols=23 Identities=26% Similarity=0.274 Sum_probs=19.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
.+++..++|+|||..|-++...+
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHh
Confidence 36899999999999888877654
No 434
>PRK07004 replicative DNA helicase; Provisional
Probab=80.22 E-value=19 Score=38.57 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=34.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
+|+|.-+|+|||.-++.++..... ..+.|++++..--.-.++...+.
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~--~~~~~v~~fSlEM~~~ql~~R~l 262 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAV--EYGLPVAVFSMEMPGTQLAMRML 262 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHH--HcCCeEEEEeCCCCHHHHHHHHH
Confidence 589999999999999988865532 24568888887666666555543
No 435
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=80.04 E-value=44 Score=34.59 Aligned_cols=47 Identities=17% Similarity=0.143 Sum_probs=32.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.-|.-|...+...+.-.-.|. ..+++...+|+|||.++--++..+..
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~ 68 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEE 68 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHh
Confidence 557778877765554333321 12788899999999998888777654
No 436
>PRK08939 primosomal protein DnaI; Reviewed
Probab=79.95 E-value=5.8 Score=40.02 Aligned_cols=34 Identities=18% Similarity=0.226 Sum_probs=26.3
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
.|.+|...+|+|||..+.|++..+.. .+.+++++
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~---~g~~v~~~ 190 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAK---KGVSSTLL 190 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEE
Confidence 57889999999999999999887753 33445544
No 437
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=79.57 E-value=12 Score=36.46 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=13.5
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
+++-.+.|.|||..+-.++.
T Consensus 19 ~~I~G~~G~GKTTLlr~I~n 38 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIAN 38 (249)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 46666699999965544443
No 438
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=79.28 E-value=1.2 Score=48.72 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcccc
Q 039292 234 ERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHAL 313 (520)
Q Consensus 234 ~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~i 313 (520)
..++....-..++..|+|+.+..... ++|+..|+.|...+. ....-...+-.+|||||||++
T Consensus 299 iEdLv~lGk~~~~CPYY~SR~avp~a--------------qlV~LPYQ~LL~~st----R~slgI~LkdsIvIiDEAHNl 360 (821)
T KOG1133|consen 299 IEDLVALGKELRGCPYYASRRAVPQA--------------QLVTLPYQLLLHEST----RKSLGISLKDSIVIIDEAHNL 360 (821)
T ss_pred HHHHHHhhhhcCCCCchhhhhccccc--------------cEEeccHHHHHhHHH----HHhcCccccccEEEEechhHH
No 439
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=79.06 E-value=16 Score=41.40 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=22.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+.|...+|.|||.++.-++..+.. ......+.+|+-
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~-~~G~kkV~lit~ 223 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVA-REGADQLALLTT 223 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHH-HcCCCeEEEecC
Confidence 458889999999887777665532 122234555544
No 440
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=78.89 E-value=5.8 Score=39.86 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 177 NFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 177 ~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
.+|......+ ++++++..||+|||..+-+++..+
T Consensus 123 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 123 DVLREAVLAR-KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHHHHHHHHh
Confidence 3444444444 578999999999999888877655
No 441
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=78.79 E-value=8.1 Score=43.25 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
.|++|..++|+|||..+-+++.
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~ 207 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAG 207 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999998877654
No 442
>PRK08006 replicative DNA helicase; Provisional
Probab=78.17 E-value=27 Score=37.47 Aligned_cols=48 Identities=21% Similarity=0.092 Sum_probs=35.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
.|||.-+|.|||.-|+.++..... ..+.+++++...--..++...+..
T Consensus 227 iiIaarPgmGKTafalnia~~~a~--~~g~~V~~fSlEM~~~ql~~Rlla 274 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAM--LQDKPVLIFSLEMPGEQIMMRMLA 274 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--hcCCeEEEEeccCCHHHHHHHHHH
Confidence 588999999999999888766532 235688888886666666655543
No 443
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=77.72 E-value=6.3 Score=38.54 Aligned_cols=47 Identities=23% Similarity=0.284 Sum_probs=34.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
-.++...+|+|||+-++.|+..... .+.|+++|.-...-..-.+.+.
T Consensus 25 ~~lI~G~pGsGKT~f~~qfl~~~~~---~ge~vlyvs~~e~~~~l~~~~~ 71 (260)
T COG0467 25 VVLITGPPGTGKTIFALQFLYEGAR---EGEPVLYVSTEESPEELLENAR 71 (260)
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh---cCCcEEEEEecCCHHHHHHHHH
Confidence 4678999999999999999987754 3778999987554444334443
No 444
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=77.64 E-value=5.1 Score=43.17 Aligned_cols=41 Identities=24% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCc-eEEeCCCCCCHHHHHHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAG-AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g-~ILademGlGKTi~aia~l~~l 211 (520)
.+-|.|...+.++.. .. +| ++++.++|+|||.+.-+++..+
T Consensus 225 g~~~~~~~~l~~~~~---~~-~GlilitGptGSGKTTtL~a~L~~l 266 (486)
T TIGR02533 225 GMSPELLSRFERLIR---RP-HGIILVTGPTGSGKTTTLYAALSRL 266 (486)
T ss_pred CCCHHHHHHHHHHHh---cC-CCEEEEEcCCCCCHHHHHHHHHhcc
Confidence 467888888888773 22 34 5799999999999887777654
No 445
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.36 E-value=20 Score=38.24 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCc-eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAG-AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g-~ILademGlGKTi~aia~l~~l~~ 213 (520)
.+.++|...+..++. .. .| .|+..++|+|||.+..+++..+..
T Consensus 241 g~~~~~~~~~~~~~~---~p-~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 241 GMSPFQLARLLRLLN---RP-QGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred CCCHHHHHHHHHHHh---CC-CeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 346777777766663 23 35 567889999999999999987744
No 446
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=77.20 E-value=7.2 Score=42.33 Aligned_cols=49 Identities=16% Similarity=0.230 Sum_probs=35.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWC 241 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 241 (520)
.++..++|+|||+.++.|+..... .+.++++|+-.....+-.+.+..+.
T Consensus 276 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~~~yis~e~~~~~i~~~~~~~g 324 (509)
T PRK09302 276 ILVSGATGTGKTLLASKFAEAACR---RGERCLLFAFEESRAQLIRNARSWG 324 (509)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh---CCCcEEEEEecCCHHHHHHHHHHcC
Confidence 467889999999999999875532 4568888877655555555555443
No 447
>PRK05595 replicative DNA helicase; Provisional
Probab=77.10 E-value=24 Score=37.61 Aligned_cols=49 Identities=16% Similarity=0.065 Sum_probs=35.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~ 240 (520)
+|+|.-+|.|||..++.++..+.. ..+.+++++...-...++...+...
T Consensus 204 iviaarpg~GKT~~al~ia~~~a~--~~g~~vl~fSlEms~~~l~~R~~a~ 252 (444)
T PRK05595 204 ILIAARPSMGKTTFALNIAEYAAL--REGKSVAIFSLEMSKEQLAYKLLCS 252 (444)
T ss_pred EEEEecCCCChHHHHHHHHHHHHH--HcCCcEEEEecCCCHHHHHHHHHHH
Confidence 578999999999999988865432 2356889988866666666555443
No 448
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=77.10 E-value=16 Score=41.58 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=19.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
+..++..++|+|||..|-+++..+
T Consensus 489 ~~~Lf~GP~GvGKT~lAk~LA~~l 512 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999998776654
No 449
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=77.01 E-value=97 Score=32.16 Aligned_cols=229 Identities=13% Similarity=0.091 Sum_probs=113.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCc-eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCe
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAG-AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFS 245 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g-~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~ 245 (520)
.-|.+|..-+.-++......... +++-...|+|||..+-.++..+ ..+...+++.... +|+-=+.+......
T Consensus 9 ~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~------n~~~vw~n~~ecf-t~~~lle~IL~~~~ 81 (438)
T KOG2543|consen 9 PCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKL------NLENVWLNCVECF-TYAILLEKILNKSQ 81 (438)
T ss_pred cchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhc------CCcceeeehHHhc-cHHHHHHHHHHHhc
Confidence 46889999988777433322223 2788899999999888777533 5577888875432 33333332221111
Q ss_pred EEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHH
Q 039292 246 VLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLM 325 (520)
Q Consensus 246 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~ 325 (520)
..-+.|.........+..+ |-.+... ...-....--++|+|-+..++...+...+.+.
T Consensus 82 ~~d~dg~~~~~~~en~~d~------------i~~l~q~----------~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~ 139 (438)
T KOG2543|consen 82 LADKDGDKVEGDAENFSDF------------IYLLVQW----------PAATNRDQKVFLILDNADALRDMDAILLQCLF 139 (438)
T ss_pred cCCCchhhhhhHHHHHHHH------------HHHHHhh----------HHhhccCceEEEEEcCHHhhhccchHHHHHHH
Confidence 1111222211111111110 0001100 00001123457899999999988887777666
Q ss_pred HH---hhhcCcEEEEeccCCCCCHHHHHHHHHHhCCC--CCCChH-HHHHHhhcCC---chH---HHHHHHHhhcchh-h
Q 039292 326 SV---ARNANQRLMLTGTPLQNDLHELWSLLEFMMPD--LFATED-VDLKKLLNGE---DRD---LIGRMKSILGPFI-L 392 (520)
Q Consensus 326 ~l---~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~--~~~~~~-~~~~~~~~~~---~~~---~~~~L~~~l~~~~-l 392 (520)
.+ .....-+|.++.++..+..--= +..+.|- .|..+. .....++... .+. ..+-|+-++++|. .
T Consensus 140 ~L~el~~~~~i~iils~~~~e~~y~~n---~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~ 216 (438)
T KOG2543|consen 140 RLYELLNEPTIVIILSAPSCEKQYLIN---TGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMA 216 (438)
T ss_pred HHHHHhCCCceEEEEeccccHHHhhcc---cCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHH
Confidence 55 2234557888888874432100 1111111 111111 1122222111 111 1344666667663 3
Q ss_pred heeHhHH----hhhcCCcEEEEEEeCCCHHH-HHHHHHHH
Q 039292 393 RRLKSDV----MQQLVPKIQWVEYVTMERPQ-EDAYRVAI 427 (520)
Q Consensus 393 RR~k~~v----~~~LP~k~e~~v~v~ms~~Q-~~~Y~~~~ 427 (520)
.|.-.++ ....|...+.+..-..++.. +.+|+.+.
T Consensus 217 crd~~eL~~~~~~~wpky~epi~~~~i~~~d~~~L~r~ik 256 (438)
T KOG2543|consen 217 CRDVNELRSLISLAWPKYCEPITKGKIDPTDKARLWRHIK 256 (438)
T ss_pred hCCHHHHHHHHHHHHHhhccccccCCCChhHHHHHHHHhh
Confidence 3322222 12468888888888888888 44444443
No 450
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=77.01 E-value=3.1 Score=48.02 Aligned_cols=187 Identities=26% Similarity=0.313 Sum_probs=102.9
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCC--HHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLG--KTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCP 242 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlG--KTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p 242 (520)
...+.++|.....-....... ...+++..|+| ||+.+..+...... ......+++++|..+..+|..+...++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 157 (866)
T COG0553 82 RFILIPHQLDIALEVLNELAL---RVLIADEVGLGDLKTIEAGAILKELLL-RGEIKRVLILVPKTLRAQWVVELLEKFN 157 (866)
T ss_pred ccccCcchhhhhhhhhhhhhh---chhhcccccccccccccccccchHhhh-hhhhccceeccchHHHHHHHHHhhhhcc
Confidence 345677777766544433332 25889999999 89887776655433 5667788999999899999998876532
Q ss_pred CC-eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCc---cEEEEeCccccCCcc-
Q 039292 243 SF-SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRW---SCVLMDEAHALKDKN- 317 (520)
Q Consensus 243 ~~-~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~---~~vIiDEaH~ikn~~- 317 (520)
.- .+....+..... ..............++...+...... ......+....| +++++||+|.+.+..
T Consensus 158 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (866)
T COG0553 158 IRLAVLDKEGLRYLL-----KQYDAYNPFSTEDLVLISLDLAKRSD---SKRREALLEAEWGERDLLVIDEAHNLGSSEG 229 (866)
T ss_pred ccchhhhhhhhhhhh-----hhhcccccccchhhhhhhhhhhhhhh---hhhhhhhhcccccchhhhhcchHhhcccccc
Confidence 11 111111110000 00000000000000222222222210 002223344445 899999999987642
Q ss_pred --------hHHHHHHHHHhhhcC------cEEEEeccCCCCCHHHHHHHHHHhCCCCCCC
Q 039292 318 --------SYRWKNLMSVARNAN------QRLMLTGTPLQNDLHELWSLLEFMMPDLFAT 363 (520)
Q Consensus 318 --------s~~~~~l~~l~~~~~------~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~ 363 (520)
...+..+.....+.. ....+++||......+++....++.+..+..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (866)
T COG0553 230 TRKLAPLETLEYELLKQLAEKIPSKLLDLKVLLLSATPEQLKEEDLFARLRLLDPLRLAD 289 (866)
T ss_pred cccccchhhhHHHHHHHHhhcccccccccchhhhccchhhccccccchhhhhccccchhh
Confidence 334444444432222 2347899999998888887777777766665
No 451
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=76.99 E-value=4.4 Score=46.12 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=18.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
.|++|..++|+|||..+-+++..
T Consensus 213 ~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 213 KGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred ceEEEECCCCCChHHHHHHHHHH
Confidence 57899999999999877666543
No 452
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=76.62 E-value=23 Score=33.11 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=18.3
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
+.++|...-|+|||...-.++..+
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHh
Confidence 457888999999998766666543
No 453
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=76.34 E-value=33 Score=36.60 Aligned_cols=36 Identities=22% Similarity=0.141 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 196 MGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 196 mGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
-|+|||+.-..=+..+ +..+...+++|.|=+..+.+
T Consensus 185 AGSGKT~~La~Kaa~l-h~knPd~~I~~Tfftk~L~s 220 (660)
T COG3972 185 AGSGKTELLAHKAAEL-HSKNPDSRIAFTFFTKILAS 220 (660)
T ss_pred cCCCchhHHHHHHHHH-hcCCCCceEEEEeehHHHHH
Confidence 6999998654444444 44666778888887655544
No 454
>PRK10436 hypothetical protein; Provisional
Probab=76.34 E-value=6.4 Score=42.06 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=31.0
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
.+-+.|...+..+... ..+-+|++..||+|||.+..+++..+
T Consensus 201 G~~~~~~~~l~~~~~~---~~GliLvtGpTGSGKTTtL~a~l~~~ 242 (462)
T PRK10436 201 GMTPAQLAQFRQALQQ---PQGLILVTGPTGSGKTVTLYSALQTL 242 (462)
T ss_pred CcCHHHHHHHHHHHHh---cCCeEEEECCCCCChHHHHHHHHHhh
Confidence 4667788888777632 22346799999999999888877665
No 455
>PRK06620 hypothetical protein; Validated
Probab=76.14 E-value=33 Score=32.51 Aligned_cols=105 Identities=12% Similarity=0.176 Sum_probs=53.2
Q ss_pred EEEEeC-CcchhhHHHHHHH-hc--CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHH
Q 039292 221 HLIVCP-ASVLENWERELKK-WC--PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKI 296 (520)
Q Consensus 221 ~LIV~P-~sll~~W~~E~~~-~~--p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~ 296 (520)
.+||.| +....++..++.. |. |..+.+.++|.....+...+..+.... +..+++..... ...
T Consensus 17 ~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~-----~~~~~~~~~~~---------~~~ 82 (214)
T PRK06620 17 EFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS-----NAYIIKDIFFN---------EEI 82 (214)
T ss_pred hhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc-----CCEEcchhhhc---------hhH
Confidence 378888 3445556665554 43 212445566665555555444433321 23333322111 112
Q ss_pred HhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCC
Q 039292 297 LKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQN 344 (520)
Q Consensus 297 l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n 344 (520)
+ ...+++++||+|++. ....+..+..+. .....+++|||--..
T Consensus 83 ~--~~~d~lliDdi~~~~--~~~lf~l~N~~~-e~g~~ilits~~~p~ 125 (214)
T PRK06620 83 L--EKYNAFIIEDIENWQ--EPALLHIFNIIN-EKQKYLLLTSSDKSR 125 (214)
T ss_pred H--hcCCEEEEeccccch--HHHHHHHHHHHH-hcCCEEEEEcCCCcc
Confidence 2 235899999999762 223343333332 445678888884433
No 456
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=75.99 E-value=1.1e+02 Score=32.28 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=25.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
..+++..++|+|||..|-++-.. .....+|+++|--..+-..|
T Consensus 163 ~~vli~Ge~GtGK~~lA~~ih~~---s~~~~~~~v~v~c~~~~~~~ 205 (445)
T TIGR02915 163 ITVLLLGESGTGKEVLARALHQL---SDRKDKRFVAINCAAIPENL 205 (445)
T ss_pred CCEEEECCCCcCHHHHHHHHHHh---CCcCCCCeEEEECCCCChHH
Confidence 46789999999999866443321 13345665555333333343
No 457
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=75.72 E-value=35 Score=34.07 Aligned_cols=46 Identities=15% Similarity=-0.012 Sum_probs=32.2
Q ss_pred CCcHHHHHHHHHHHHHHhcC-CCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKG-IAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~-~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.|...|..++..+......+ ...++|... |.||+..|..|+..+..
T Consensus 2 ~l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC 48 (290)
T PRK07276 2 DLKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFC 48 (290)
T ss_pred cHHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcC
Confidence 36677888888887666554 233455544 68999999999987754
No 458
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=75.69 E-value=30 Score=37.68 Aligned_cols=59 Identities=27% Similarity=0.331 Sum_probs=34.1
Q ss_pred HHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh-HHHHH
Q 039292 176 VNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN-WEREL 237 (520)
Q Consensus 176 v~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~-W~~E~ 237 (520)
+.............+++..|+|+||+..|-++-.. ..+..+|++.|--..+-.+ |..++
T Consensus 224 ~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~---S~r~~~pfv~inC~~l~e~lleseL 283 (526)
T TIGR02329 224 VRALVRLYARSDATVLILGESGTGKELVAQAIHQL---SGRRDFPFVAINCGAIAESLLEAEL 283 (526)
T ss_pred HHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHh---cCcCCCCEEEeccccCChhHHHHHh
Confidence 33344444444457899999999999877554321 2345567666644333333 44444
No 459
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=75.55 E-value=8.4 Score=36.71 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=30.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWEREL 237 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 237 (520)
.+++.++|+|||..+..++..... ...++++|+-.....+..+..
T Consensus 23 ~~i~G~~G~GKT~l~~~~~~~~~~---~g~~~~~is~e~~~~~i~~~~ 67 (229)
T TIGR03881 23 VAVTGEPGTGKTIFCLHFAYKGLR---DGDPVIYVTTEESRESIIRQA 67 (229)
T ss_pred EEEECCCCCChHHHHHHHHHHHHh---cCCeEEEEEccCCHHHHHHHH
Confidence 578999999999999888764432 345778887654444443333
No 460
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=75.30 E-value=4.7 Score=39.63 Aligned_cols=24 Identities=21% Similarity=0.266 Sum_probs=20.3
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
+.+|++.++|+|||.+.-+++..+
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i 151 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEI 151 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHC
T ss_pred eEEEEECCCccccchHHHHHhhhc
Confidence 567899999999999988877654
No 461
>PRK08506 replicative DNA helicase; Provisional
Probab=74.93 E-value=47 Score=35.71 Aligned_cols=46 Identities=15% Similarity=0.091 Sum_probs=34.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
+|+|..+|.|||.-++.++.... ..+.++++++.---..++...+.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~---~~g~~V~~fSlEMs~~ql~~Rll 240 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKAL---NQDKGVAFFSLEMPAEQLMLRML 240 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHH---hcCCcEEEEeCcCCHHHHHHHHH
Confidence 58999999999999998887653 24568899988666666555543
No 462
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=74.88 E-value=16 Score=39.68 Aligned_cols=65 Identities=20% Similarity=0.228 Sum_probs=41.7
Q ss_pred HHHHHHHH-HHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhc
Q 039292 174 VGVNFLLL-LYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWC 241 (520)
Q Consensus 174 ~gv~~l~~-~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 241 (520)
.++..++. ....| +-.+|+.++|+|||+-++.|+..... ..+.++|+|.=.....+-.+.+..+.
T Consensus 18 ~~LD~~l~GG~p~G-s~~li~G~pGsGKT~l~~qf~~~~~~--~~ge~~lyis~ee~~~~i~~~~~~~g 83 (509)
T PRK09302 18 EGFDDITHGGLPKG-RPTLVSGTAGTGKTLFALQFLVNGIK--RFDEPGVFVTFEESPEDIIRNVASFG 83 (509)
T ss_pred hhHHHhhcCCCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHH--hcCCCEEEEEccCCHHHHHHHHHHcC
Confidence 45555552 12222 23678999999999999998865432 22568888877666666555555543
No 463
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=74.84 E-value=73 Score=29.97 Aligned_cols=40 Identities=15% Similarity=0.135 Sum_probs=26.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhC---CCCCCEEEEeCCcc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLN---NDPGPHLIVCPASV 229 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~---~~~~~~LIV~P~sl 229 (520)
..++.++|+|||..++.++....... +...++++|.....
T Consensus 22 ~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 22 TEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred EEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 46888999999999988876542211 11266777777543
No 464
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=74.45 E-value=97 Score=32.78 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=28.0
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
...++..++|+||+..|-++.. ......+|++.|--..+-..|
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~---~s~~~~~~~~~i~c~~~~~~~ 209 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHY---NSRRAKGPFIKVNCAALPESL 209 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHH---hCCCCCCCeEEEECCCCCHHH
Confidence 4578899999999988766533 223455676666555444444
No 465
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=73.73 E-value=18 Score=41.87 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=19.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~ 212 (520)
.++..++|.|||..|-++...+.
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 68999999999999988877663
No 466
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=73.54 E-value=1.9 Score=42.44 Aligned_cols=24 Identities=38% Similarity=0.340 Sum_probs=20.1
Q ss_pred CCCceEEeCCCCCCHHHHHHHHHH
Q 039292 186 GIAGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 186 ~~~g~ILademGlGKTi~aia~l~ 209 (520)
...|+||..++|+|||+.|-|++.
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVAN 241 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVAN 241 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhc
Confidence 346899999999999998877663
No 467
>PF12846 AAA_10: AAA-like domain
Probab=73.41 E-value=7.8 Score=38.18 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=30.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERE 236 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E 236 (520)
.+++...+|+|||..+..++..+.. .+.+++|+=|..-...|.+.
T Consensus 3 h~~i~G~tGsGKT~~~~~l~~~~~~---~g~~~~i~D~~g~~~~~~~~ 47 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLLEQLIR---RGPRVVIFDPKGDYSPLARA 47 (304)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHH---cCCCEEEEcCCchHHHHHHh
Confidence 3578888999999888877655533 44677788776544444443
No 468
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=73.32 E-value=21 Score=39.95 Aligned_cols=81 Identities=17% Similarity=0.232 Sum_probs=56.3
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC---CCCCCEEEEeCC-cchhhHHHHHHHhc
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN---NDPGPHLIVCPA-SVLENWERELKKWC 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~---~~~~~~LIV~P~-sll~~W~~E~~~~~ 241 (520)
..|..-|+.|...++...- .|+..++|+|||.+++-++..+.... ...-|+||||=+ +.+.|...-+..+
T Consensus 377 ~ildsSq~~A~qs~ltyel-----sliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~- 450 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLTYEL-----SLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH- 450 (1025)
T ss_pred eeecHHHHHHHHHHhhhhh-----heeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc-
Confidence 4677889999988874322 38889999999988888777765533 234689999984 6788876666542
Q ss_pred CCCeEEEecCC
Q 039292 242 PSFSVLQYHGA 252 (520)
Q Consensus 242 p~~~v~~~~g~ 252 (520)
....++..++.
T Consensus 451 qrpsImr~gsr 461 (1025)
T KOG1807|consen 451 QRPSIMRQGSR 461 (1025)
T ss_pred CCceEEEeccc
Confidence 23445544444
No 469
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=73.28 E-value=23 Score=35.96 Aligned_cols=39 Identities=15% Similarity=0.102 Sum_probs=29.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLE 231 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~ 231 (520)
..++.++|+|||..++.++..... ..+++++|.+...+.
T Consensus 58 teI~Gp~GsGKTtLal~~~~~~~~---~g~~~vyId~E~~~~ 96 (325)
T cd00983 58 IEIYGPESSGKTTLALHAIAEAQK---LGGTVAFIDAEHALD 96 (325)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---cCCCEEEECccccHH
Confidence 458889999999999988766533 467888888765544
No 470
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=73.23 E-value=0.55 Score=48.43 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=12.5
Q ss_pred ccccccccCCCCCCCCcc
Q 039292 9 SEISDEEWEPHSESFKPS 26 (520)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~ 26 (520)
++.+||||.....+.++.
T Consensus 8 s~~e~ddWi~~~~~~~~K 25 (458)
T PF10446_consen 8 SEPEEDDWIRQDTDYKRK 25 (458)
T ss_pred Cccchhhhhhcccccccc
Confidence 456799999986554443
No 471
>PRK09354 recA recombinase A; Provisional
Probab=72.94 E-value=14 Score=37.79 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=29.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
..+..++|+|||..++.++..... ..+++++|.....+..
T Consensus 63 teI~G~~GsGKTtLal~~~~~~~~---~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 63 VEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALDP 102 (349)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEECCccchHH
Confidence 458889999999999988865532 4577788877665554
No 472
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=72.76 E-value=35 Score=31.25 Aligned_cols=59 Identities=15% Similarity=0.238 Sum_probs=27.7
Q ss_pred HHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhh--hcCcEEEEeccCCCCCHHHHHHHHHH
Q 039292 294 RKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVAR--NANQRLMLTGTPLQNDLHELWSLLEF 355 (520)
Q Consensus 294 ~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~--~~~~rl~LTgTPi~n~~~el~~ll~f 355 (520)
...+....|++||+||.-..-+..-.....+..+.. ....-++|||--. +.+|..+.++
T Consensus 89 ~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~---~~~l~e~ADl 149 (172)
T PF02572_consen 89 KEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNA---PEELIEAADL 149 (172)
T ss_dssp HHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS-----HHHHHH-SE
T ss_pred HHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCC---CHHHHHhCCe
Confidence 344556789999999986553322211122222211 3455799999655 4455444443
No 473
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=72.73 E-value=5.8 Score=39.26 Aligned_cols=51 Identities=22% Similarity=0.172 Sum_probs=33.0
Q ss_pred CCCCccCCcHHHHHHH-HHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 161 DSDFQPVLKPYQLVGV-NFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 161 ~~~~~~~Lr~~Q~~gv-~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
+.+|..+...--..|+ --|....+...++++||..+|+|||..|+++...|
T Consensus 37 ~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqEL 88 (456)
T KOG1942|consen 37 AAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQEL 88 (456)
T ss_pred ccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHh
Confidence 4455555554444443 22333334444778999999999999998877655
No 474
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=72.55 E-value=35 Score=34.35 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~ 212 (520)
..|+..+.|.|||..|.+++..+.
T Consensus 28 a~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 28 AHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred eEEeECCCCCCHHHHHHHHHHHHc
Confidence 347999999999999999987764
No 475
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=72.54 E-value=8.7 Score=43.41 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=18.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
-+|-.|+|.|||..+=+++..+
T Consensus 194 PvLiGEpGVGKTAIvEGLA~rI 215 (786)
T COG0542 194 PVLVGEPGVGKTAIVEGLAQRI 215 (786)
T ss_pred CeEecCCCCCHHHHHHHHHHHH
Confidence 3777799999999988888766
No 476
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.52 E-value=30 Score=38.54 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=16.6
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
++|..++|+|||..+-.++.
T Consensus 113 llL~GP~GsGKTTl~~~la~ 132 (637)
T TIGR00602 113 LLITGPSGCGKSTTIKILSK 132 (637)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999987766554
No 477
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=72.42 E-value=9 Score=39.79 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=19.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~ 213 (520)
.-|..|.|+||+++|.+++..|..
T Consensus 39 lAlVGESGSGKSvTa~sim~LLp~ 62 (534)
T COG4172 39 LALVGESGSGKSVTALSILGLLPS 62 (534)
T ss_pred EEEEecCCCCccHHHHHHHHhcCC
Confidence 346679999999999999876643
No 478
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=72.36 E-value=33 Score=37.52 Aligned_cols=62 Identities=26% Similarity=0.335 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHH-----hCCCCCCEEEEeCCcchhh-HHHHH
Q 039292 176 VNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKH-----LNNDPGPHLIVCPASVLEN-WEREL 237 (520)
Q Consensus 176 v~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~-----~~~~~~~~LIV~P~sll~~-W~~E~ 237 (520)
+.............+++-.|+|+||+..|=++-..+.. ..+..+|++.|--..+-.+ |..++
T Consensus 231 ~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseL 298 (538)
T PRK15424 231 VRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAEL 298 (538)
T ss_pred HHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHh
Confidence 44444444444457899999999999877654432110 1335567666643333233 44443
No 479
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=72.25 E-value=8.9 Score=38.30 Aligned_cols=104 Identities=13% Similarity=0.175 Sum_probs=56.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cch-----hhHHHHHHHh--c--CCCeEEEecCCCchhhhH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVL-----ENWERELKKW--C--PSFSVLQYHGAGRTAYSR 259 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll-----~~W~~E~~~~--~--p~~~v~~~~g~~~~~~~~ 259 (520)
+++-.++|+||+--.=.++..-+ ......+++.|+|. ..+ .-|.-++.+= . |+-.++...|+-
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~l-I~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~------ 162 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQL-IQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTF------ 162 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCc-ccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccc------
Confidence 47788999999954333332221 24456778999993 333 4488887642 1 222233222221
Q ss_pred HHHHHhhcCCCCCccEEEeehhhHhhhhccccc--h--HHHHhhcCccEEEEeCccc
Q 039292 260 ELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKD--D--RKILKRWRWSCVLMDEAHA 312 (520)
Q Consensus 260 ~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~--~--~~~l~~~~~~~vIiDEaH~ 312 (520)
....+-++|+-+...-...-. + ...-....+-+||+|||=.
T Consensus 163 ------------~P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDECMe 207 (369)
T PF02456_consen 163 ------------RPKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDECME 207 (369)
T ss_pred ------------cccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHHHH
Confidence 235677777776542111000 0 1112344678999999854
No 480
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=72.10 E-value=12 Score=38.83 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=43.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCC-CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch
Q 039292 167 VLKPYQLVGVNFLLLLYRKGI-AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL 230 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~-~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll 230 (520)
+|-+-|+.++.+++....... ....|...-|+|||...=++...+. .....+++++|+.+.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~---~~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLR---SRGKKVLVTAPTGIA 62 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhc---cccceEEEecchHHH
Confidence 366789999888865554322 3357888999999988777766553 355688999997654
No 481
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=71.99 E-value=4.6 Score=43.85 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=30.3
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
.|++|+.++|.|||+.|=|++..- +--++=|--.-|+..|.-|=+
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEa------g~NFisVKGPELlNkYVGESE 590 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEA------GANFISVKGPELLNKYVGESE 590 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhc------cCceEeecCHHHHHHHhhhHH
Confidence 689999999999999988876422 222343434556666766543
No 482
>PRK12608 transcription termination factor Rho; Provisional
Probab=71.89 E-value=16 Score=37.74 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
.+.-..+|..|... .+|.++ ++..++|+|||..+..++..+.
T Consensus 117 ~~~~~RvID~l~Pi-GkGQR~-LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 117 DDLSMRVVDLVAPI-GKGQRG-LIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred cchhHhhhhheeec-CCCceE-EEECCCCCCHHHHHHHHHHHHH
Confidence 34444566666543 245444 7777799999998877776664
No 483
>PF05729 NACHT: NACHT domain
Probab=71.76 E-value=6.3 Score=34.88 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=20.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHL 214 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~ 214 (520)
++|..++|+|||..+-.++..+...
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~ 27 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEE 27 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhc
Confidence 5788899999999988888777553
No 484
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=71.50 E-value=42 Score=36.62 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=27.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
..++|..|+|+|||..|-++-.. ..+..+|++.|--..+-..|
T Consensus 220 ~pvli~Ge~GtGK~~lA~~ih~~---s~r~~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 220 STVLLRGESGTGKELIAKAIHYL---SPRAKRPFVKVNCAALSETL 262 (534)
T ss_pred CCEEEECCCCccHHHHHHHHHHh---CCCCCCCeEEeecCCCCHHH
Confidence 46899999999999877554332 23356677666544443444
No 485
>PRK07773 replicative DNA helicase; Validated
Probab=71.49 E-value=31 Score=40.21 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=34.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKK 239 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~ 239 (520)
+|+|..+|+|||.-++.++..... ....+++++.---...+....+..
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~--~~~~~V~~fSlEms~~ql~~R~~s 267 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAI--RHRLAVAIFSLEMSKEQLVMRLLS 267 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHH--hcCCeEEEEecCCCHHHHHHHHHH
Confidence 589999999999999998876532 235688888775555565555443
No 486
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=71.19 E-value=21 Score=36.18 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=21.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
+....=|.|||.+|+|++..+.. .+ .+ +|+|
T Consensus 6 ~f~GKGGVGKTT~aaA~A~~lA~-~g-~k-vLlv 36 (322)
T COG0003 6 FFTGKGGVGKTTIAAATAVKLAE-SG-KK-VLLV 36 (322)
T ss_pred EEecCCcccHHHHHHHHHHHHHH-cC-Cc-EEEE
Confidence 34455689999999998887755 33 33 5555
No 487
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=70.96 E-value=10 Score=41.75 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
.+.|.|...+.++... ..+-+|++.+||+|||.+..+++..+
T Consensus 299 g~~~~~~~~l~~~~~~---~~Glilv~G~tGSGKTTtl~a~l~~~ 340 (564)
T TIGR02538 299 GFEPDQKALFLEAIHK---PQGMVLVTGPTGSGKTVSLYTALNIL 340 (564)
T ss_pred CCCHHHHHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4667888887777632 21336799999999999887877655
No 488
>PHA00350 putative assembly protein
Probab=70.67 E-value=23 Score=37.06 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=13.5
Q ss_pred EEeCCCCCCHHHHHHHH
Q 039292 191 ILADEMGLGKTIQAITY 207 (520)
Q Consensus 191 ILademGlGKTi~aia~ 207 (520)
|+-.-+|+|||.-|+.+
T Consensus 5 l~tG~pGSGKT~~aV~~ 21 (399)
T PHA00350 5 AIVGRPGSYKSYEAVVY 21 (399)
T ss_pred EEecCCCCchhHHHHHH
Confidence 44456999999999975
No 489
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=70.57 E-value=7.3 Score=36.46 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=24.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE-eCC
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV-CPA 227 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV-~P~ 227 (520)
.++++..+|+|||....+++..+........-.|+| =|.
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred eEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 579999999999998888887775533333334444 444
No 490
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=70.39 E-value=30 Score=35.00 Aligned_cols=41 Identities=32% Similarity=0.409 Sum_probs=26.1
Q ss_pred cCCCceEEeCCCCCCHHHHHHHHHHHHHH-------hCCCCCCEEEEeC
Q 039292 185 KGIAGAILADEMGLGKTIQAITYLMLLKH-------LNNDPGPHLIVCP 226 (520)
Q Consensus 185 ~~~~g~ILademGlGKTi~aia~l~~l~~-------~~~~~~~~LIV~P 226 (520)
.+. +.||+.+-|+|||..+|-+...+.. .....|.+|+|.=
T Consensus 88 ~g~-~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvsl 135 (402)
T COG3598 88 KGY-VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSL 135 (402)
T ss_pred cCe-eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEe
Confidence 553 6799999999999776655433321 1234566777654
No 491
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=70.36 E-value=41 Score=35.57 Aligned_cols=136 Identities=13% Similarity=0.096 Sum_probs=71.1
Q ss_pred HHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEe-cCCCc
Q 039292 176 VNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQY-HGAGR 254 (520)
Q Consensus 176 v~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~-~g~~~ 254 (520)
+.-|...+..+ .-.|+|.=+|.|||.-|+.++..... ....|+.|..=.-.-.||..-+......+....+ .|.-.
T Consensus 186 LD~~t~G~~~~-dLii~AaRP~mGKTafalnia~n~a~--~~~~~v~iFSLEM~~eql~~R~Ls~~s~v~~~kirtg~l~ 262 (435)
T COG0305 186 LDEITSGFRPG-DLIIVAARPGMGKTALALNIALNAAA--DGRKPVAIFSLEMSEEQLVMRLLSSESGIESSKLRTGRLS 262 (435)
T ss_pred hHHHhcCCccC-CEEEEccCCCCChHHHHHHHHHHHHH--hcCCCeEEEEccCCHHHHHHHhhccccccchhcccccccc
Confidence 33444333333 34789999999999999998877754 4566788887777778887776554433322111 22211
Q ss_pred hhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc
Q 039292 255 TAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN 317 (520)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~ 317 (520)
...+..+..... ......+.|--+..+.-.-... .-+..-.....+++++|=-|-+....
T Consensus 263 ~~d~~~l~~a~~--~l~~~~i~IdD~~~~si~eir~-~aRrlk~~~~l~~i~iDYLqLm~~~~ 322 (435)
T COG0305 263 DDEWERLIKAAS--ELSEAPIFIDDTPGLTITEIRS-KARRLKLKHNLGLIVIDYLQLMTGGK 322 (435)
T ss_pred HHHHHHHHHHHH--HHhhCCeeecCCCcCCHHHHHH-HHHHHHHhcCccEEEEEEEEeecccc
Confidence 111111111110 1112335543322221100000 02233344458899999988886543
No 492
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=70.30 E-value=31 Score=33.40 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=18.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~ 212 (520)
++++.-+|+|||..|-.+...+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 47788899999999988877663
No 493
>PRK15115 response regulator GlrR; Provisional
Probab=70.24 E-value=62 Score=34.17 Aligned_cols=43 Identities=16% Similarity=0.215 Sum_probs=25.9
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
..+++..+.|+|||..|-++-.. ..+..+|++.|--..+-..|
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~---s~r~~~~f~~i~c~~~~~~~ 200 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNA---SPRASKPFIAINCGALPEQL 200 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHh---cCCCCCCeEEEeCCCCCHHH
Confidence 35789999999999865443321 23345676666544443333
No 494
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=70.03 E-value=89 Score=28.77 Aligned_cols=53 Identities=19% Similarity=0.239 Sum_probs=30.7
Q ss_pred HHHHhhcCccEEEEeCccccCCcc----hHHHHHHHHHhhhcCcEEEEeccCCCCCHHH
Q 039292 294 RKILKRWRWSCVLMDEAHALKDKN----SYRWKNLMSVARNANQRLMLTGTPLQNDLHE 348 (520)
Q Consensus 294 ~~~l~~~~~~~vIiDEaH~ikn~~----s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~e 348 (520)
...+....|++||+||.-..-+.. ......+..- ....-++|||--....+.|
T Consensus 108 ~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~r--p~~~evILTGR~~p~~Lie 164 (178)
T PRK07414 108 QAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKR--PSHVDVILTGPEMPESLLA 164 (178)
T ss_pred HHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhC--CCCCEEEEECCCCCHHHHH
Confidence 345566789999999987654422 2222222221 3334799999754444333
No 495
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=69.96 E-value=11 Score=45.67 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=41.8
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
+.+-|..+|. ..+ +.+++....|+|||.+.+.-+..+.........+||||=+....++
T Consensus 2 ~t~~Q~~ai~------~~~-~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e 60 (1232)
T TIGR02785 2 WTDEQWQAIY------TRG-QNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAARE 60 (1232)
T ss_pred CCHHHHHHHh------CCC-CCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHH
Confidence 4578988885 123 4578999999999999888776554433334568999887666554
No 496
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=69.93 E-value=14 Score=32.25 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=24.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
.+|..++|+|||.-+=+++..+-. .--|..|+..+-|
T Consensus 25 i~l~G~lGaGKTtl~~~l~~~lg~------~~~v~SPTf~lv~ 61 (133)
T TIGR00150 25 VLLKGDLGAGKTTLVQGLLQGLGI------QGNVTSPTFTLVN 61 (133)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCC------CCcccCCCeeeee
Confidence 568899999999887777665421 1135566655443
No 497
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=69.86 E-value=50 Score=33.19 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=18.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
..++++..+|+|||...-+++..
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~ 167 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDE 167 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHcc
Confidence 56899999999999877665543
No 498
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=69.29 E-value=31 Score=35.31 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=24.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
|+|..-+|+|||.++-.+...+.. ..+.++.||+=
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~--~~g~~v~~~~~ 36 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRR--ERGWAVAVITY 36 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh--ccCCeEEEEcc
Confidence 678888999999988887766642 23445666544
No 499
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=69.07 E-value=11 Score=42.16 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
.|+||-.++|+|||+.|=|++.
T Consensus 706 SGILLYGPPGTGKTLlAKAVAT 727 (953)
T KOG0736|consen 706 SGILLYGPPGTGKTLLAKAVAT 727 (953)
T ss_pred ceeEEECCCCCchHHHHHHHHh
Confidence 5889999999999999888765
No 500
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=68.81 E-value=11 Score=29.73 Aligned_cols=32 Identities=22% Similarity=0.270 Sum_probs=22.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
++....|.|||..+..++..+.. .+.+++++-
T Consensus 3 ~~~g~~G~Gktt~~~~l~~~l~~---~g~~v~~~~ 34 (99)
T cd01983 3 VVTGKGGVGKTTLAANLAAALAK---RGKRVLLID 34 (99)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEC
Confidence 44555699999999998887754 344556554
Done!