Query 039292
Match_columns 520
No_of_seqs 416 out of 2765
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 13:53:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039292.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039292hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mwy_W Chromo domain-containin 100.0 3.5E-50 1.2E-54 453.4 25.5 291 164-477 233-528 (800)
2 1z3i_X Similar to RAD54-like; 100.0 1E-49 3.5E-54 439.3 20.1 295 160-476 48-367 (644)
3 1z63_A Helicase of the SNF2/RA 100.0 3.7E-45 1.3E-49 392.2 25.9 281 161-477 31-316 (500)
4 3dmq_A RNA polymerase-associat 100.0 2.9E-30 9.9E-35 295.6 15.4 247 164-425 150-450 (968)
5 1wp9_A ATP-dependent RNA helic 99.9 1E-22 3.4E-27 215.0 22.7 215 167-404 9-239 (494)
6 2fwr_A DNA repair protein RAD2 99.9 4.7E-21 1.6E-25 203.4 17.0 194 165-431 91-287 (472)
7 1rif_A DAR protein, DNA helica 99.8 7.6E-20 2.6E-24 181.0 14.4 164 166-358 112-278 (282)
8 3tbk_A RIG-I helicase domain; 99.8 2.4E-18 8.1E-23 185.4 17.7 174 167-358 4-198 (555)
9 2ykg_A Probable ATP-dependent 99.8 5.3E-18 1.8E-22 188.5 19.2 176 166-359 12-208 (696)
10 2fz4_A DNA repair protein RAD2 99.8 3.2E-18 1.1E-22 165.0 15.1 142 164-346 90-233 (237)
11 3h1t_A Type I site-specific re 99.8 6.5E-19 2.2E-23 192.2 11.4 170 165-353 176-353 (590)
12 4a2p_A RIG-I, retinoic acid in 99.8 6.5E-18 2.2E-22 182.3 17.3 162 166-346 6-181 (556)
13 4a2q_A RIG-I, retinoic acid in 99.8 2.4E-17 8.3E-22 185.9 22.6 171 165-354 246-430 (797)
14 2oca_A DAR protein, ATP-depend 99.8 3.2E-18 1.1E-22 183.3 14.6 166 166-360 112-280 (510)
15 4a2w_A RIG-I, retinoic acid in 99.8 1.4E-17 4.8E-22 190.4 20.2 172 165-355 246-431 (936)
16 2gxq_A Heat resistant RNA depe 99.7 7.4E-17 2.5E-21 151.4 15.1 166 166-349 22-192 (207)
17 1t6n_A Probable ATP-dependent 99.7 8.9E-17 3.1E-21 152.6 15.7 164 167-348 36-206 (220)
18 4gl2_A Interferon-induced heli 99.7 2.4E-17 8.3E-22 183.2 12.1 180 166-358 6-215 (699)
19 2oxc_A Probable ATP-dependent 99.7 3.5E-16 1.2E-20 149.8 15.0 158 167-342 46-209 (230)
20 1xti_A Probable ATP-dependent 99.7 3.1E-16 1.1E-20 161.4 15.0 162 167-344 30-197 (391)
21 3b6e_A Interferon-induced heli 99.7 7.6E-16 2.6E-20 145.2 15.7 139 165-316 31-177 (216)
22 1qde_A EIF4A, translation init 99.7 4.3E-16 1.5E-20 148.2 13.5 157 167-342 36-197 (224)
23 1vec_A ATP-dependent RNA helic 99.7 7.5E-16 2.6E-20 144.5 15.0 159 167-342 25-188 (206)
24 2pl3_A Probable ATP-dependent 99.7 5.1E-16 1.7E-20 149.1 13.8 160 166-342 46-213 (236)
25 1hv8_A Putative ATP-dependent 99.7 5.9E-16 2E-20 157.6 14.0 160 167-344 28-191 (367)
26 1q0u_A Bstdead; DEAD protein, 99.6 7.9E-16 2.7E-20 146.1 13.0 164 167-349 26-198 (219)
27 3ber_A Probable ATP-dependent 99.6 2.3E-15 8E-20 146.0 15.7 160 167-342 65-228 (249)
28 1fuu_A Yeast initiation factor 99.6 1.1E-15 3.8E-20 157.3 13.3 160 166-343 42-205 (394)
29 2z0m_A 337AA long hypothetical 99.6 2.5E-15 8.6E-20 151.2 15.4 153 167-343 16-172 (337)
30 2j0s_A ATP-dependent RNA helic 99.6 1.6E-15 5.3E-20 157.5 13.0 160 167-343 59-222 (410)
31 2w00_A HSDR, R.ECOR124I; ATP-b 99.6 3.4E-15 1.2E-19 170.4 16.3 162 166-344 270-441 (1038)
32 1s2m_A Putative ATP-dependent 99.6 2.6E-15 8.8E-20 155.3 12.9 157 167-342 43-205 (400)
33 3bor_A Human initiation factor 99.6 2.3E-15 7.7E-20 144.9 11.1 159 167-342 52-215 (237)
34 1wrb_A DJVLGB; RNA helicase, D 99.6 7.7E-15 2.6E-19 142.4 14.0 160 166-342 44-220 (253)
35 3pey_A ATP-dependent RNA helic 99.6 4.3E-15 1.5E-19 152.7 12.8 158 166-342 26-188 (395)
36 3eiq_A Eukaryotic initiation f 99.6 3.5E-15 1.2E-19 154.7 12.0 159 167-342 62-225 (414)
37 3oiy_A Reverse gyrase helicase 99.6 2E-14 6.9E-19 149.6 16.7 162 167-347 21-209 (414)
38 3l9o_A ATP-dependent RNA helic 99.6 3.6E-14 1.2E-18 164.0 19.4 162 163-355 180-343 (1108)
39 3iuy_A Probable ATP-dependent 99.6 1.5E-14 5.2E-19 138.0 13.6 158 167-342 42-209 (228)
40 3dkp_A Probable ATP-dependent 99.6 7.8E-15 2.7E-19 141.6 10.6 161 167-341 51-220 (245)
41 2eyq_A TRCF, transcription-rep 99.5 7.9E-14 2.7E-18 162.0 18.4 162 165-347 601-767 (1151)
42 3ly5_A ATP-dependent RNA helic 99.5 5.3E-14 1.8E-18 137.4 13.4 159 167-342 76-243 (262)
43 3fe2_A Probable ATP-dependent 99.5 8.8E-14 3E-18 134.1 13.6 158 166-341 50-217 (242)
44 3fho_A ATP-dependent RNA helic 99.5 2.3E-14 7.9E-19 153.4 10.1 159 167-342 141-302 (508)
45 3fht_A ATP-dependent RNA helic 99.5 4.3E-14 1.5E-18 146.3 11.3 160 166-342 46-211 (412)
46 2xgj_A ATP-dependent RNA helic 99.5 3.9E-13 1.3E-17 154.0 18.3 160 164-354 83-244 (1010)
47 2db3_A ATP-dependent RNA helic 99.5 2.4E-13 8E-18 142.6 14.9 159 167-342 78-247 (434)
48 1gm5_A RECG; helicase, replica 99.5 2.1E-13 7.2E-18 151.7 13.1 159 167-346 368-531 (780)
49 2i4i_A ATP-dependent RNA helic 99.4 3.7E-13 1.3E-17 139.7 12.8 158 166-342 36-221 (417)
50 1oyw_A RECQ helicase, ATP-depe 99.4 3.6E-13 1.2E-17 144.4 12.6 170 167-358 25-201 (523)
51 3fmp_B ATP-dependent RNA helic 99.4 2.2E-13 7.4E-18 144.6 8.0 172 166-358 113-290 (479)
52 3sqw_A ATP-dependent RNA helic 99.4 5.1E-12 1.7E-16 137.3 18.6 164 167-343 43-225 (579)
53 4a4z_A Antiviral helicase SKI2 99.4 1.6E-12 5.6E-17 148.8 15.2 162 164-354 36-199 (997)
54 3fmo_B ATP-dependent RNA helic 99.4 7.9E-13 2.7E-17 131.7 9.6 160 166-343 113-279 (300)
55 3i5x_A ATP-dependent RNA helic 99.4 8.9E-12 3.1E-16 134.8 18.5 164 167-343 94-276 (563)
56 2v1x_A ATP-dependent DNA helic 99.4 3.7E-12 1.3E-16 138.3 14.1 172 167-354 44-223 (591)
57 2zj8_A DNA helicase, putative 99.3 3E-12 1E-16 142.7 12.1 161 167-351 23-187 (720)
58 2va8_A SSO2462, SKI2-type heli 99.3 1.3E-11 4.3E-16 137.6 15.3 161 167-353 30-195 (715)
59 4ddu_A Reverse gyrase; topoiso 99.3 2.8E-11 9.7E-16 139.8 18.5 163 167-348 78-267 (1104)
60 2p6r_A Afuhel308 helicase; pro 99.3 1.1E-11 3.7E-16 137.8 13.7 160 167-351 25-190 (702)
61 1gku_B Reverse gyrase, TOP-RG; 99.0 1.2E-09 4.2E-14 126.1 13.5 153 168-344 58-228 (1054)
62 1z5z_A Helicase of the SNF2/RA 98.9 3.8E-10 1.3E-14 110.5 4.9 75 391-477 13-87 (271)
63 4f92_B U5 small nuclear ribonu 98.9 1E-08 3.5E-13 123.0 16.7 167 166-353 925-1103(1724)
64 3llm_A ATP-dependent RNA helic 98.9 6.7E-09 2.3E-13 99.3 10.8 155 167-344 61-221 (235)
65 4f92_B U5 small nuclear ribonu 98.9 1.8E-08 6.1E-13 120.9 15.5 167 166-351 78-262 (1724)
66 3hgt_A HDA1 complex subunit 3; 98.8 1.7E-09 5.8E-14 106.9 4.8 101 403-512 20-123 (328)
67 2v6i_A RNA helicase; membrane, 98.8 3.7E-08 1.3E-12 102.9 12.9 131 188-344 3-137 (431)
68 3crv_A XPD/RAD3 related DNA he 98.7 3.4E-08 1.2E-12 106.5 11.5 78 167-251 3-83 (551)
69 2vl7_A XPD; helicase, unknown 98.7 4.6E-08 1.6E-12 105.1 11.8 76 167-251 7-83 (540)
70 3o8b_A HCV NS3 protease/helica 98.6 7.7E-08 2.6E-12 104.6 10.6 127 188-343 233-362 (666)
71 2jlq_A Serine protease subunit 98.6 1.6E-07 5.4E-12 98.7 10.6 130 189-344 21-154 (451)
72 2z83_A Helicase/nucleoside tri 98.5 1.6E-07 5.3E-12 98.9 9.3 131 188-344 22-156 (459)
73 1yks_A Genome polyprotein [con 98.5 1.2E-07 4.1E-12 99.2 8.0 131 188-344 9-143 (440)
74 2ipc_A Preprotein translocase 98.5 8.7E-07 3E-11 97.6 14.9 146 167-346 79-233 (997)
75 1nkt_A Preprotein translocase 98.5 1.4E-06 4.9E-11 96.1 14.9 128 167-314 111-244 (922)
76 2whx_A Serine protease/ntpase/ 98.4 5.8E-07 2E-11 97.9 11.1 131 188-344 187-321 (618)
77 2fsf_A Preprotein translocase 98.4 2.6E-06 8.9E-11 93.8 13.8 128 167-314 74-207 (853)
78 2wv9_A Flavivirin protease NS2 98.4 5.3E-07 1.8E-11 99.0 8.3 152 167-344 215-376 (673)
79 1tf5_A Preprotein translocase 98.3 3.7E-06 1.3E-10 92.8 12.6 125 167-314 83-216 (844)
80 2xau_A PRE-mRNA-splicing facto 98.2 1.4E-06 4.8E-11 97.3 8.0 150 170-341 96-250 (773)
81 4a15_A XPD helicase, ATP-depen 98.1 6.7E-06 2.3E-10 89.6 10.5 82 167-251 3-87 (620)
82 3rc3_A ATP-dependent RNA helic 98.1 8.7E-06 3E-10 89.2 9.7 122 188-340 156-280 (677)
83 4b3f_X DNA-binding protein smu 97.9 5.2E-05 1.8E-09 83.1 13.3 72 163-241 185-257 (646)
84 3upu_A ATP-dependent DNA helic 97.8 0.00019 6.4E-09 75.3 13.5 65 166-232 24-88 (459)
85 2gk6_A Regulator of nonsense t 97.7 0.0002 6.8E-09 78.1 13.6 154 166-343 179-375 (624)
86 3e1s_A Exodeoxyribonuclease V, 97.6 0.00023 7.7E-09 76.7 11.0 132 165-344 187-318 (574)
87 2wjy_A Regulator of nonsense t 97.5 0.00061 2.1E-08 76.1 12.7 154 166-343 355-551 (800)
88 2xzl_A ATP-dependent helicase 97.5 0.00057 2E-08 76.4 12.2 153 166-343 359-553 (802)
89 3jux_A Protein translocase sub 97.4 0.0022 7.4E-08 69.7 14.6 74 167-251 75-152 (822)
90 1c4o_A DNA nucleotide excision 97.2 0.0019 6.6E-08 70.7 12.0 78 167-250 8-86 (664)
91 2orw_A Thymidine kinase; TMTK, 97.1 0.0015 5E-08 59.5 8.8 35 190-227 6-40 (184)
92 1w36_D RECD, exodeoxyribonucle 97.1 0.0013 4.6E-08 71.3 9.7 59 169-232 151-210 (608)
93 2o0j_A Terminase, DNA packagin 96.9 0.011 3.8E-07 60.0 13.6 159 166-356 162-326 (385)
94 3lfu_A DNA helicase II; SF1 he 96.8 0.012 4E-07 64.1 14.5 69 166-241 8-78 (647)
95 3cpe_A Terminase, DNA packagin 96.8 0.0054 1.9E-07 66.2 11.1 153 166-344 162-316 (592)
96 1xx6_A Thymidine kinase; NESG, 96.7 0.011 3.9E-07 53.9 11.3 34 191-227 12-45 (191)
97 2j9r_A Thymidine kinase; TK1, 96.7 0.0078 2.7E-07 55.9 10.2 34 192-228 33-66 (214)
98 2d7d_A Uvrabc system protein B 96.6 0.008 2.7E-07 65.8 11.4 78 167-250 12-90 (661)
99 1l8q_A Chromosomal replication 96.6 0.018 6.3E-07 56.8 13.0 36 188-226 38-73 (324)
100 3syl_A Protein CBBX; photosynt 96.5 0.015 5.3E-07 56.8 11.2 39 188-226 68-107 (309)
101 2b8t_A Thymidine kinase; deoxy 96.4 0.018 6E-07 54.0 10.3 35 190-227 15-49 (223)
102 3vkw_A Replicase large subunit 96.3 0.0065 2.2E-07 62.7 7.3 108 190-344 164-272 (446)
103 2orv_A Thymidine kinase; TP4A 96.1 0.039 1.3E-06 51.7 10.9 34 191-227 23-56 (234)
104 1uaa_A REP helicase, protein ( 96.0 0.047 1.6E-06 59.8 13.3 68 167-241 2-71 (673)
105 1jbk_A CLPB protein; beta barr 95.8 0.092 3.2E-06 46.4 12.1 26 188-213 44-69 (195)
106 2p65_A Hypothetical protein PF 95.7 0.095 3.3E-06 46.3 11.6 25 188-212 44-68 (187)
107 4b4t_J 26S protease regulatory 95.6 0.05 1.7E-06 55.4 10.4 44 188-237 183-226 (405)
108 3bos_A Putative DNA replicatio 95.6 0.061 2.1E-06 49.9 10.4 40 174-213 38-78 (242)
109 3eie_A Vacuolar protein sortin 95.5 0.017 5.9E-07 57.1 6.6 24 188-211 52-75 (322)
110 1a5t_A Delta prime, HOLB; zinc 95.5 0.079 2.7E-06 52.6 11.1 46 168-213 3-50 (334)
111 2qp9_X Vacuolar protein sortin 95.4 0.017 5.7E-07 58.2 6.2 24 188-211 85-108 (355)
112 2z4s_A Chromosomal replication 95.4 0.11 3.7E-06 53.8 12.3 27 187-213 130-156 (440)
113 3e2i_A Thymidine kinase; Zn-bi 95.3 0.11 3.6E-06 48.2 10.5 35 191-228 32-66 (219)
114 3ec2_A DNA replication protein 95.3 0.24 8.1E-06 44.0 12.7 44 169-212 16-63 (180)
115 3uk6_A RUVB-like 2; hexameric 95.2 0.12 4.2E-06 51.6 11.8 55 169-227 49-106 (368)
116 1w4r_A Thymidine kinase; type 95.2 0.12 4.1E-06 47.1 10.4 34 191-227 24-57 (195)
117 3h4m_A Proteasome-activating n 95.1 0.063 2.2E-06 51.7 8.8 24 187-210 51-74 (285)
118 2bjv_A PSP operon transcriptio 94.9 0.17 5.7E-06 48.2 11.2 34 188-224 30-63 (265)
119 3te6_A Regulatory protein SIR3 94.8 0.49 1.7E-05 46.5 14.4 45 169-213 25-71 (318)
120 2qz4_A Paraplegin; AAA+, SPG7, 94.7 0.23 8E-06 46.8 11.6 35 188-228 40-74 (262)
121 3dm5_A SRP54, signal recogniti 94.6 0.44 1.5E-05 49.1 13.9 57 190-249 103-159 (443)
122 3u61_B DNA polymerase accessor 94.5 0.18 6.1E-06 49.5 10.5 49 301-351 105-155 (324)
123 3t15_A Ribulose bisphosphate c 94.4 0.2 6.8E-06 48.7 10.5 37 188-230 37-73 (293)
124 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.057 1.9E-06 53.4 6.6 38 188-230 46-83 (322)
125 3vfd_A Spastin; ATPase, microt 94.4 0.11 3.7E-06 52.8 8.8 39 188-232 149-187 (389)
126 2chg_A Replication factor C sm 94.2 0.23 8E-06 44.9 10.1 24 188-211 39-62 (226)
127 4b4t_H 26S protease regulatory 94.2 0.17 5.8E-06 52.3 9.7 44 187-236 243-286 (467)
128 2v1u_A Cell division control p 94.2 0.25 8.7E-06 49.2 11.1 44 169-212 24-69 (387)
129 2qby_B CDC6 homolog 3, cell di 94.1 0.14 4.8E-06 51.3 9.0 45 169-213 25-71 (384)
130 3n70_A Transport activator; si 94.1 0.23 7.8E-06 42.6 9.1 24 186-209 23-46 (145)
131 3kl4_A SRP54, signal recogniti 94.0 0.45 1.5E-05 48.9 12.5 33 190-225 100-132 (433)
132 3co5_A Putative two-component 94.0 0.074 2.5E-06 45.7 5.7 32 176-207 16-47 (143)
133 3d8b_A Fidgetin-like protein 1 93.8 0.12 4E-06 51.9 7.6 38 187-230 117-154 (357)
134 1sxj_A Activator 1 95 kDa subu 93.7 0.21 7.2E-06 52.7 9.8 24 188-211 78-101 (516)
135 2zan_A Vacuolar protein sortin 93.6 0.063 2.1E-06 55.7 5.4 42 187-233 167-208 (444)
136 4b4t_L 26S protease subunit RP 93.5 0.061 2.1E-06 55.5 5.0 43 188-236 216-258 (437)
137 2qby_A CDC6 homolog 1, cell di 93.3 0.26 8.8E-06 49.1 9.3 45 169-213 25-71 (386)
138 1d2n_A N-ethylmaleimide-sensit 93.3 0.41 1.4E-05 45.6 10.3 23 188-210 65-87 (272)
139 1fnn_A CDC6P, cell division co 93.3 1.5 5.2E-05 43.5 15.1 43 169-211 22-68 (389)
140 1ojl_A Transcriptional regulat 93.2 0.56 1.9E-05 45.8 11.3 40 185-227 23-62 (304)
141 1ofh_A ATP-dependent HSL prote 93.2 0.99 3.4E-05 43.4 13.1 24 188-211 51-74 (310)
142 1njg_A DNA polymerase III subu 93.0 0.72 2.5E-05 42.1 11.3 43 169-212 28-70 (250)
143 2cvh_A DNA repair and recombin 93.0 0.72 2.5E-05 41.9 11.2 33 190-228 23-55 (220)
144 2gno_A DNA polymerase III, gam 93.0 0.22 7.6E-06 48.8 7.9 38 172-209 2-40 (305)
145 1sxj_D Activator 1 41 kDa subu 92.9 0.18 6.3E-06 49.8 7.4 25 188-212 59-83 (353)
146 1iqp_A RFCS; clamp loader, ext 92.7 0.29 1E-05 47.6 8.5 40 170-211 31-70 (327)
147 4b4t_M 26S protease regulatory 92.7 0.071 2.4E-06 54.9 4.0 44 187-236 215-258 (434)
148 4fcw_A Chaperone protein CLPB; 92.7 0.55 1.9E-05 45.5 10.4 34 189-225 49-82 (311)
149 4b4t_I 26S protease regulatory 92.7 0.088 3E-06 53.9 4.6 43 188-236 217-259 (437)
150 1jr3_A DNA polymerase III subu 92.5 0.96 3.3E-05 44.8 12.2 42 169-211 21-62 (373)
151 3hu3_A Transitional endoplasmi 92.5 0.19 6.6E-06 52.7 7.1 23 187-209 238-260 (489)
152 1xp8_A RECA protein, recombina 92.2 0.96 3.3E-05 45.4 11.6 57 174-234 60-118 (366)
153 2q6t_A DNAB replication FORK h 91.9 1.2 4E-05 46.0 12.1 47 190-238 203-249 (444)
154 3pvs_A Replication-associated 91.7 0.61 2.1E-05 48.2 9.7 23 188-210 51-73 (447)
155 4b4t_K 26S protease regulatory 91.7 0.11 3.9E-06 53.3 4.1 41 188-234 207-247 (428)
156 2r6a_A DNAB helicase, replicat 91.6 1.7 6E-05 44.8 13.2 45 190-236 206-250 (454)
157 2r8r_A Sensor protein; KDPD, P 91.5 1.2 4.1E-05 41.4 10.5 25 189-213 8-32 (228)
158 3bgw_A DNAB-like replicative h 91.4 2.3 7.8E-05 43.8 13.7 60 175-238 186-245 (444)
159 2zr9_A Protein RECA, recombina 91.2 1.4 4.9E-05 43.8 11.6 41 190-233 64-104 (349)
160 3b9p_A CG5977-PA, isoform A; A 91.0 0.3 1E-05 47.1 6.2 24 187-210 54-77 (297)
161 2kjq_A DNAA-related protein; s 90.8 1.4 4.9E-05 37.9 9.8 25 188-212 37-61 (149)
162 2dr3_A UPF0273 protein PH0284; 90.7 4.2 0.00015 37.3 13.9 46 190-238 26-71 (247)
163 1sxj_B Activator 1 37 kDa subu 90.4 0.73 2.5E-05 44.6 8.5 23 189-211 44-66 (323)
164 1qvr_A CLPB protein; coiled co 90.4 0.6 2.1E-05 52.5 8.8 26 188-213 192-217 (854)
165 2zts_A Putative uncharacterize 90.2 0.57 1.9E-05 43.5 7.2 49 190-240 33-81 (251)
166 2w0m_A SSO2452; RECA, SSPF, un 90.0 7.7 0.00026 35.0 14.9 40 190-232 26-65 (235)
167 3pfi_A Holliday junction ATP-d 90.0 3.4 0.00012 40.3 13.1 40 170-209 35-77 (338)
168 3hr8_A Protein RECA; alpha and 90.0 2.8 9.5E-05 41.8 12.4 40 190-232 64-103 (356)
169 3k1j_A LON protease, ATP-depen 89.9 2.6 9E-05 45.2 13.0 36 175-211 49-84 (604)
170 3bh0_A DNAB-like replicative h 89.0 8.1 0.00028 37.5 14.8 61 174-238 56-116 (315)
171 1vma_A Cell division protein F 88.9 2.2 7.5E-05 41.6 10.5 33 191-226 108-140 (306)
172 3cf0_A Transitional endoplasmi 88.9 0.38 1.3E-05 46.8 5.0 23 188-210 50-72 (301)
173 1u94_A RECA protein, recombina 88.4 5 0.00017 39.9 12.9 40 189-231 65-104 (356)
174 1n0w_A DNA repair protein RAD5 88.4 7.2 0.00025 35.6 13.5 39 190-228 27-68 (243)
175 1r6b_X CLPA protein; AAA+, N-t 88.3 1.4 4.9E-05 48.6 9.8 26 187-212 207-232 (758)
176 2ce7_A Cell division protein F 88.2 1.2 4.2E-05 46.3 8.5 23 188-210 50-72 (476)
177 1zu4_A FTSY; GTPase, signal re 88.1 3.8 0.00013 40.2 11.7 34 190-226 108-141 (320)
178 1um8_A ATP-dependent CLP prote 88.0 3.3 0.00011 41.3 11.4 24 188-211 73-96 (376)
179 1sxj_C Activator 1 40 kDa subu 87.9 1.1 3.6E-05 44.3 7.6 40 173-212 31-71 (340)
180 3pxi_A Negative regulator of g 87.8 2.2 7.4E-05 47.2 10.8 33 189-224 523-555 (758)
181 2r62_A Cell division protease 87.7 0.15 5E-06 48.6 1.0 24 188-211 45-68 (268)
182 2z43_A DNA repair and recombin 87.7 4.3 0.00015 39.7 11.8 40 190-229 110-152 (324)
183 1nlf_A Regulatory protein REPA 87.5 8.6 0.00029 36.4 13.7 42 190-233 33-83 (279)
184 1w5s_A Origin recognition comp 87.1 5.3 0.00018 39.9 12.5 44 169-212 27-77 (412)
185 4a1f_A DNAB helicase, replicat 86.6 2.5 8.5E-05 41.8 9.3 59 175-237 35-93 (338)
186 1sxj_E Activator 1 40 kDa subu 86.6 3.8 0.00013 40.2 10.9 40 172-211 19-60 (354)
187 2chq_A Replication factor C sm 86.5 0.43 1.5E-05 46.2 3.7 23 189-211 40-62 (319)
188 2xxa_A Signal recognition part 86.5 9.3 0.00032 39.1 13.9 35 190-226 103-137 (433)
189 1v5w_A DMC1, meiotic recombina 86.4 7.2 0.00025 38.4 12.8 40 190-229 125-167 (343)
190 2qen_A Walker-type ATPase; unk 85.8 4.8 0.00016 39.0 11.1 37 169-209 17-53 (350)
191 2w58_A DNAI, primosome compone 85.5 1.7 5.7E-05 39.0 7.0 34 188-224 55-88 (202)
192 1ls1_A Signal recognition part 85.3 8.1 0.00028 37.2 12.2 32 192-226 103-134 (295)
193 3cmu_A Protein RECA, recombina 84.8 4.6 0.00016 49.1 12.0 57 174-234 718-776 (2050)
194 3hjh_A Transcription-repair-co 84.6 2.1 7.3E-05 44.6 8.1 88 190-285 17-115 (483)
195 3io5_A Recombination and repai 84.2 5.6 0.00019 39.0 10.3 42 190-232 31-72 (333)
196 1pjr_A PCRA; DNA repair, DNA r 83.9 1.2 3.9E-05 49.1 6.0 57 166-229 10-67 (724)
197 2ffh_A Protein (FFH); SRP54, s 82.6 9.5 0.00032 38.9 11.8 34 190-226 101-134 (425)
198 2px0_A Flagellar biosynthesis 82.6 3.9 0.00013 39.5 8.6 35 190-226 108-142 (296)
199 1cr0_A DNA primase/helicase; R 82.4 3.8 0.00013 39.3 8.4 45 190-236 38-82 (296)
200 1ny5_A Transcriptional regulat 82.3 42 0.0014 33.4 16.6 41 185-228 158-198 (387)
201 1q57_A DNA primase/helicase; d 82.3 14 0.00047 38.4 13.4 46 190-237 245-290 (503)
202 1qvr_A CLPB protein; coiled co 82.2 4.4 0.00015 45.4 10.0 23 189-211 590-612 (854)
203 2i1q_A DNA repair and recombin 82.2 8.9 0.0003 37.2 11.2 21 190-210 101-121 (322)
204 1r6b_X CLPA protein; AAA+, N-t 81.6 10 0.00035 41.6 12.6 23 189-211 490-512 (758)
205 2c9o_A RUVB-like 1; hexameric 81.4 2.5 8.4E-05 43.7 7.0 62 170-235 43-107 (456)
206 1g5t_A COB(I)alamin adenosyltr 81.2 28 0.00096 31.3 13.1 34 189-225 30-63 (196)
207 2fna_A Conserved hypothetical 80.3 14 0.00048 35.6 12.0 37 169-211 18-54 (357)
208 3u4q_B ATP-dependent helicase/ 80.2 2.5 8.4E-05 49.2 7.2 51 191-242 6-56 (1166)
209 1j8m_F SRP54, signal recogniti 79.5 11 0.00038 36.3 10.7 33 191-226 102-134 (297)
210 3cmu_A Protein RECA, recombina 79.3 12 0.00042 45.5 12.8 49 188-241 1428-1476(2050)
211 3cf2_A TER ATPase, transitiona 78.8 1.3 4.4E-05 49.2 4.0 40 188-233 239-278 (806)
212 2qgz_A Helicase loader, putati 78.0 3 0.0001 40.6 6.1 25 188-212 153-177 (308)
213 2zpa_A Uncharacterized protein 76.6 10 0.00035 41.0 10.1 55 166-229 174-228 (671)
214 3lda_A DNA repair protein RAD5 75.2 16 0.00053 36.9 10.6 40 190-229 181-223 (400)
215 3u4q_A ATP-dependent helicase/ 74.6 4.6 0.00016 47.2 7.3 55 166-227 9-66 (1232)
216 4dzz_A Plasmid partitioning pr 74.5 44 0.0015 29.2 14.3 41 191-234 6-48 (206)
217 2j37_W Signal recognition part 72.9 8.5 0.00029 40.2 8.2 34 190-226 104-137 (504)
218 1tue_A Replication protein E1; 72.9 3.4 0.00012 37.8 4.5 24 188-211 59-82 (212)
219 1byi_A Dethiobiotin synthase; 71.1 5.2 0.00018 36.3 5.5 34 190-226 5-38 (224)
220 3cmw_A Protein RECA, recombina 70.5 30 0.001 41.6 12.8 54 175-232 719-774 (1706)
221 2v3c_C SRP54, signal recogniti 68.8 4 0.00014 41.8 4.5 34 190-226 102-135 (432)
222 2dhr_A FTSH; AAA+ protein, hex 68.6 14 0.00048 38.4 8.7 22 188-209 65-86 (499)
223 1lv7_A FTSH; alpha/beta domain 67.7 9.4 0.00032 35.5 6.6 24 188-211 46-69 (257)
224 2r44_A Uncharacterized protein 66.4 3.5 0.00012 40.2 3.4 24 188-211 47-70 (331)
225 2ehv_A Hypothetical protein PH 65.7 37 0.0013 30.8 10.4 41 190-232 33-73 (251)
226 1pzn_A RAD51, DNA repair and r 65.7 50 0.0017 32.4 11.8 40 190-229 134-176 (349)
227 3e70_C DPA, signal recognition 65.3 71 0.0024 31.0 12.7 33 190-225 132-164 (328)
228 4a74_A DNA repair and recombin 64.1 76 0.0026 28.1 12.1 39 190-228 28-69 (231)
229 1g3q_A MIND ATPase, cell divis 62.4 8.5 0.00029 35.1 5.1 33 191-226 7-39 (237)
230 1ypw_A Transitional endoplasmi 62.2 8 0.00027 42.9 5.7 22 188-209 239-260 (806)
231 3cmw_A Protein RECA, recombina 61.6 38 0.0013 40.6 11.4 41 189-232 385-425 (1706)
232 2yhs_A FTSY, cell division pro 61.6 72 0.0025 33.1 12.3 32 190-224 296-327 (503)
233 3q9l_A Septum site-determining 60.9 9.1 0.00031 35.4 5.1 33 191-226 7-39 (260)
234 2oze_A ORF delta'; para, walke 60.4 17 0.00059 34.4 7.1 28 194-224 44-71 (298)
235 1u0j_A DNA replication protein 60.3 11 0.00039 35.7 5.5 23 188-210 105-127 (267)
236 1hyq_A MIND, cell division inh 59.5 11 0.00037 35.1 5.3 33 191-226 7-39 (263)
237 3ea0_A ATPase, para family; al 59.4 11 0.00038 34.5 5.3 34 191-226 9-42 (245)
238 3hws_A ATP-dependent CLP prote 59.0 14 0.00048 36.4 6.3 33 188-226 52-84 (363)
239 2ph1_A Nucleotide-binding prot 58.7 10 0.00035 35.5 5.0 33 191-226 23-55 (262)
240 2og2_A Putative signal recogni 57.5 1.2E+02 0.0042 29.7 12.9 33 190-225 160-192 (359)
241 3of5_A Dethiobiotin synthetase 57.1 14 0.00047 34.1 5.5 24 190-213 8-31 (228)
242 3cf2_A TER ATPase, transitiona 57.0 3.9 0.00013 45.3 1.9 40 188-233 512-551 (806)
243 3zq6_A Putative arsenical pump 56.8 11 0.00038 36.6 5.1 35 190-227 17-51 (324)
244 3cio_A ETK, tyrosine-protein k 56.3 13 0.00044 35.8 5.4 32 191-225 109-140 (299)
245 3ug7_A Arsenical pump-driving 56.1 12 0.00042 36.8 5.3 34 190-226 29-62 (349)
246 4etp_A Kinesin-like protein KA 56.0 10 0.00035 38.4 4.7 29 177-205 130-159 (403)
247 2eyq_A TRCF, transcription-rep 55.2 15 0.00052 42.4 6.6 87 191-285 21-118 (1151)
248 3cwq_A Para family chromosome 54.7 12 0.00041 33.7 4.6 41 191-235 5-47 (209)
249 3qxc_A Dethiobiotin synthetase 54.4 16 0.00055 34.0 5.5 34 190-226 25-58 (242)
250 3bfv_A CAPA1, CAPB2, membrane 54.2 14 0.00047 35.0 5.1 31 192-225 88-118 (271)
251 2x8a_A Nuclear valosin-contain 53.9 12 0.0004 35.5 4.6 22 188-209 45-66 (274)
252 2r2a_A Uncharacterized protein 53.8 11 0.00038 34.0 4.1 21 190-210 8-28 (199)
253 1f9v_A Kinesin-like protein KA 53.6 10 0.00034 37.6 4.1 29 177-205 74-103 (347)
254 3fgn_A Dethiobiotin synthetase 53.3 9.5 0.00032 35.9 3.7 24 190-213 30-53 (251)
255 3t0q_A AGR253WP; kinesin, alph 53.3 10 0.00035 37.5 4.1 30 176-205 74-104 (349)
256 3k9g_A PF-32 protein; ssgcid, 53.2 12 0.0004 35.0 4.4 30 191-224 32-61 (267)
257 1hqc_A RUVB; extended AAA-ATPa 52.4 19 0.00066 34.4 6.0 24 188-211 39-62 (324)
258 3nwn_A Kinesin-like protein KI 52.3 10 0.00035 37.7 4.0 27 179-205 96-123 (359)
259 3la6_A Tyrosine-protein kinase 52.2 16 0.00054 35.0 5.2 33 190-225 96-128 (286)
260 3kjh_A CO dehydrogenase/acetyl 51.6 11 0.00037 34.5 3.9 29 193-224 6-34 (254)
261 3iqw_A Tail-anchored protein t 51.6 16 0.00055 35.8 5.2 42 190-234 19-62 (334)
262 3nbx_X ATPase RAVA; AAA+ ATPas 51.5 9.8 0.00033 39.7 3.8 22 188-209 42-63 (500)
263 4ehx_A Tetraacyldisaccharide 4 50.8 46 0.0016 32.2 8.3 17 196-212 47-63 (315)
264 2rep_A Kinesin-like protein KI 50.6 13 0.00043 37.3 4.3 28 178-205 106-134 (376)
265 2woo_A ATPase GET3; tail-ancho 50.2 14 0.00049 36.0 4.6 34 190-226 22-55 (329)
266 1x88_A Kinesin-like protein KI 49.9 13 0.00043 37.0 4.2 28 178-205 79-107 (359)
267 2xj4_A MIPZ; replication, cell 49.7 15 0.00051 34.8 4.6 42 191-235 9-53 (286)
268 1bg2_A Kinesin; motor protein, 48.7 13 0.00044 36.4 4.0 29 178-206 68-97 (325)
269 3dc4_A Kinesin-like protein NO 48.6 11 0.00039 37.1 3.6 27 178-204 85-112 (344)
270 3gbj_A KIF13B protein; kinesin 48.5 15 0.00053 36.3 4.5 28 178-205 83-111 (354)
271 2wbe_C Bipolar kinesin KRP-130 48.4 13 0.00046 37.0 4.1 29 177-205 90-119 (373)
272 2yvu_A Probable adenylyl-sulfa 48.4 24 0.00081 30.7 5.4 32 190-224 16-47 (186)
273 3b6u_A Kinesin-like protein KI 48.3 13 0.00044 37.1 4.0 30 177-206 91-121 (372)
274 3trf_A Shikimate kinase, SK; a 47.9 13 0.00045 32.3 3.6 23 189-211 7-29 (185)
275 1wcv_1 SOJ, segregation protei 47.9 12 0.00041 34.9 3.5 32 191-225 11-42 (257)
276 4a14_A Kinesin, kinesin-like p 47.4 14 0.00047 36.5 4.0 28 177-204 73-101 (344)
277 2owm_A Nckin3-434, related to 47.4 16 0.00054 37.5 4.5 28 178-205 127-155 (443)
278 1goj_A Kinesin, kinesin heavy 47.3 13 0.00043 37.0 3.7 29 177-205 70-99 (355)
279 2y65_A Kinesin, kinesin heavy 47.3 14 0.00047 36.8 4.0 28 178-205 75-103 (365)
280 1rj9_A FTSY, signal recognitio 47.1 1.2E+02 0.0042 28.9 10.7 33 190-225 105-137 (304)
281 3dzd_A Transcriptional regulat 46.9 2.2E+02 0.0074 27.9 13.2 23 185-207 150-172 (368)
282 3lre_A Kinesin-like protein KI 46.6 14 0.00048 36.6 3.9 28 178-205 96-124 (355)
283 3b9q_A Chloroplast SRP recepto 46.4 2E+02 0.0068 27.3 12.7 33 191-226 104-136 (302)
284 3pxg_A Negative regulator of g 46.3 22 0.00075 36.6 5.5 25 188-212 202-226 (468)
285 2woj_A ATPase GET3; tail-ancho 46.2 17 0.00058 35.9 4.4 37 190-227 21-57 (354)
286 3cob_A Kinesin heavy chain-lik 45.9 9.7 0.00033 38.0 2.6 27 179-205 71-98 (369)
287 3fwy_A Light-independent proto 45.8 16 0.00056 35.4 4.2 31 192-225 53-83 (314)
288 2nr8_A Kinesin-like protein KI 45.8 15 0.00052 36.5 4.0 28 178-205 94-122 (358)
289 2vvg_A Kinesin-2; motor protei 45.7 13 0.00044 36.8 3.4 28 178-205 80-108 (350)
290 1v8k_A Kinesin-like protein KI 45.7 12 0.00041 37.9 3.2 29 178-206 145-174 (410)
291 1ihu_A Arsenical pump-driving 45.7 21 0.00071 37.9 5.4 34 190-226 11-44 (589)
292 2zfi_A Kinesin-like protein KI 45.1 16 0.00053 36.5 4.0 28 178-205 80-108 (366)
293 2h58_A Kinesin-like protein KI 44.8 14 0.00047 36.3 3.4 27 179-205 72-99 (330)
294 1yrb_A ATP(GTP)binding protein 44.8 24 0.00083 32.5 5.2 32 190-225 17-48 (262)
295 1p9r_A General secretion pathw 44.7 40 0.0014 34.1 7.0 50 168-224 151-201 (418)
296 1cp2_A CP2, nitrogenase iron p 44.5 19 0.00063 33.6 4.3 29 193-224 7-35 (269)
297 1ry6_A Internal kinesin; kines 44.3 16 0.00053 36.4 3.8 23 184-206 81-104 (360)
298 2afh_E Nitrogenase iron protei 44.2 23 0.00078 33.5 4.9 29 193-224 8-36 (289)
299 1t5c_A CENP-E protein, centrom 43.9 14 0.00049 36.5 3.4 27 179-205 69-96 (349)
300 3end_A Light-independent proto 43.6 25 0.00086 33.5 5.2 30 192-224 46-75 (307)
301 1kht_A Adenylate kinase; phosp 43.0 18 0.00061 31.4 3.7 22 190-211 6-27 (192)
302 3u06_A Protein claret segregat 42.9 15 0.00051 37.2 3.4 29 177-205 128-157 (412)
303 2oap_1 GSPE-2, type II secreti 42.8 23 0.00077 37.0 5.0 37 169-209 246-282 (511)
304 3kb2_A SPBC2 prophage-derived 42.5 18 0.00063 30.7 3.6 22 190-211 4-25 (173)
305 3io3_A DEHA2D07832P; chaperone 42.5 23 0.00079 34.9 4.7 36 190-226 21-56 (348)
306 3vaa_A Shikimate kinase, SK; s 42.3 18 0.00062 32.0 3.7 23 189-211 27-49 (199)
307 1g41_A Heat shock protein HSLU 42.2 23 0.00078 36.3 4.7 24 188-211 51-74 (444)
308 2qmh_A HPR kinase/phosphorylas 41.5 14 0.00049 33.4 2.8 22 188-209 35-56 (205)
309 3a4m_A L-seryl-tRNA(SEC) kinas 41.2 34 0.0012 31.9 5.5 23 190-212 7-29 (260)
310 3iij_A Coilin-interacting nucl 40.8 20 0.00069 31.0 3.6 23 189-211 13-35 (180)
311 4ag6_A VIRB4 ATPase, type IV s 40.7 39 0.0013 33.5 6.2 45 188-235 36-80 (392)
312 2rhm_A Putative kinase; P-loop 40.7 18 0.00062 31.5 3.4 22 190-211 8-29 (193)
313 2ze6_A Isopentenyl transferase 40.7 19 0.00066 33.5 3.7 22 190-211 4-25 (253)
314 3bfn_A Kinesin-like protein KI 40.5 15 0.00051 36.9 3.0 27 179-205 90-117 (388)
315 1ixz_A ATP-dependent metallopr 40.5 17 0.00057 33.6 3.2 22 188-209 50-71 (254)
316 1qhx_A CPT, protein (chloramph 40.3 17 0.00057 31.4 3.0 21 190-210 6-26 (178)
317 1in4_A RUVB, holliday junction 40.2 47 0.0016 32.2 6.6 42 170-211 31-75 (334)
318 2heh_A KIF2C protein; kinesin, 39.9 16 0.00055 36.6 3.1 29 178-206 125-154 (387)
319 1nks_A Adenylate kinase; therm 39.8 19 0.00066 31.2 3.4 22 190-211 4-25 (194)
320 2iut_A DNA translocase FTSK; n 39.3 34 0.0012 36.2 5.6 41 188-228 215-256 (574)
321 1e9r_A Conjugal transfer prote 39.1 28 0.00096 35.1 4.9 39 189-230 55-93 (437)
322 1aky_A Adenylate kinase; ATP:A 38.6 22 0.00076 31.9 3.7 22 190-211 7-28 (220)
323 2jaq_A Deoxyguanosine kinase; 38.5 23 0.00077 31.1 3.7 22 190-211 3-24 (205)
324 1zuh_A Shikimate kinase; alpha 38.5 24 0.00081 30.1 3.7 23 189-211 9-31 (168)
325 1g8p_A Magnesium-chelatase 38 38.5 11 0.00038 36.6 1.6 24 188-211 46-69 (350)
326 1ak2_A Adenylate kinase isoenz 38.4 22 0.00076 32.4 3.7 23 189-211 18-40 (233)
327 3tqf_A HPR(Ser) kinase; transf 38.3 19 0.00064 31.9 2.9 22 188-209 17-38 (181)
328 3lw7_A Adenylate kinase relate 37.9 19 0.00065 30.5 3.0 18 190-207 4-21 (179)
329 3fkq_A NTRC-like two-domain pr 37.9 26 0.00091 34.6 4.4 33 190-225 147-179 (373)
330 1tev_A UMP-CMP kinase; ploop, 37.7 24 0.00082 30.6 3.7 22 190-211 6-27 (196)
331 4akg_A Glutathione S-transfera 37.6 48 0.0016 41.8 7.3 59 170-229 907-965 (2695)
332 3pg5_A Uncharacterized protein 37.6 18 0.00063 35.7 3.2 31 191-224 6-36 (361)
333 3cm0_A Adenylate kinase; ATP-b 37.5 24 0.00083 30.5 3.7 22 190-211 7-28 (186)
334 1via_A Shikimate kinase; struc 37.1 25 0.00086 30.2 3.7 22 190-211 7-28 (175)
335 1qf9_A UMP/CMP kinase, protein 36.8 23 0.00077 30.7 3.4 22 190-211 9-30 (194)
336 2c95_A Adenylate kinase 1; tra 36.2 24 0.00081 30.8 3.4 23 189-211 11-33 (196)
337 2iyv_A Shikimate kinase, SK; t 36.1 26 0.0009 30.3 3.6 22 190-211 5-26 (184)
338 1e6c_A Shikimate kinase; phosp 36.0 27 0.00094 29.7 3.7 22 190-211 5-26 (173)
339 1ly1_A Polynucleotide kinase; 35.8 23 0.00078 30.3 3.2 20 190-209 5-24 (181)
340 3a8t_A Adenylate isopentenyltr 35.8 21 0.00072 35.1 3.1 20 190-209 43-62 (339)
341 3t61_A Gluconokinase; PSI-biol 35.6 26 0.0009 30.9 3.6 23 189-211 20-42 (202)
342 4h1g_A Maltose binding protein 35.6 23 0.00078 38.6 3.8 27 178-204 453-480 (715)
343 1zak_A Adenylate kinase; ATP:A 35.5 24 0.00081 31.8 3.4 22 190-211 8-29 (222)
344 1iy2_A ATP-dependent metallopr 35.2 22 0.00076 33.3 3.2 23 188-210 74-96 (278)
345 2cdn_A Adenylate kinase; phosp 34.5 29 0.00099 30.6 3.7 22 190-211 23-44 (201)
346 2pt5_A Shikimate kinase, SK; a 34.4 30 0.001 29.3 3.7 22 190-211 3-24 (168)
347 1xjc_A MOBB protein homolog; s 34.4 56 0.0019 28.4 5.4 24 190-213 7-30 (169)
348 2ck3_A ATP synthase subunit al 34.2 88 0.003 32.4 7.6 64 174-239 151-222 (510)
349 1c4o_A DNA nucleotide excision 33.8 20 0.00068 38.8 2.9 12 303-314 327-338 (664)
350 2bwj_A Adenylate kinase 5; pho 33.6 28 0.00095 30.4 3.4 22 190-211 15-36 (199)
351 2plr_A DTMP kinase, probable t 33.5 30 0.001 30.4 3.7 22 190-211 7-28 (213)
352 3pxi_A Negative regulator of g 33.5 36 0.0012 37.2 5.0 25 187-211 201-225 (758)
353 3sr0_A Adenylate kinase; phosp 33.3 30 0.001 31.1 3.6 22 190-211 3-24 (206)
354 2jgn_A DBX, DDX3, ATP-dependen 33.3 1.2E+02 0.0042 26.2 7.7 76 197-283 29-106 (185)
355 3ez2_A Plasmid partition prote 33.1 33 0.0011 34.1 4.3 34 191-224 113-149 (398)
356 2rb4_A ATP-dependent RNA helic 33.0 1.6E+02 0.0056 24.9 8.4 57 217-279 33-91 (175)
357 3fb4_A Adenylate kinase; psych 33.0 31 0.001 30.7 3.6 22 190-211 3-24 (216)
358 2r2a_A Uncharacterized protein 32.9 18 0.00062 32.5 2.0 41 301-341 87-132 (199)
359 2ius_A DNA translocase FTSK; n 32.8 47 0.0016 34.6 5.4 40 189-228 169-209 (512)
360 2pbr_A DTMP kinase, thymidylat 32.6 32 0.0011 29.8 3.6 22 190-211 3-24 (195)
361 4anj_A Unconventional myosin-V 32.1 43 0.0015 38.2 5.3 50 165-216 124-173 (1052)
362 1e4v_A Adenylate kinase; trans 32.0 30 0.001 31.0 3.4 22 190-211 3-24 (214)
363 3i5x_A ATP-dependent RNA helic 32.0 1.4E+02 0.0048 30.8 9.2 76 201-280 322-400 (563)
364 3umf_A Adenylate kinase; rossm 31.8 33 0.0011 31.2 3.6 22 190-211 32-53 (217)
365 3crm_A TRNA delta(2)-isopenten 31.5 26 0.00088 34.2 3.0 23 189-211 7-29 (323)
366 1y63_A LMAJ004144AAA protein; 31.5 33 0.0011 29.9 3.5 21 189-209 12-32 (184)
367 3be4_A Adenylate kinase; malar 31.1 32 0.0011 30.9 3.4 22 190-211 8-29 (217)
368 3d3q_A TRNA delta(2)-isopenten 31.1 28 0.00094 34.3 3.1 22 190-211 10-31 (340)
369 2vhj_A Ntpase P4, P4; non- hyd 31.0 32 0.0011 33.6 3.5 22 189-210 125-146 (331)
370 2z0h_A DTMP kinase, thymidylat 30.6 36 0.0012 29.6 3.6 23 190-212 3-25 (197)
371 2hjv_A ATP-dependent RNA helic 30.5 1.6E+02 0.0055 24.6 7.8 61 217-284 34-96 (163)
372 1t5i_A C_terminal domain of A 30.4 2E+02 0.0067 24.4 8.5 60 217-283 30-91 (172)
373 1gvn_B Zeta; postsegregational 30.3 27 0.00091 33.3 2.8 20 190-209 36-55 (287)
374 2xb4_A Adenylate kinase; ATP-b 29.9 37 0.0013 30.6 3.7 22 190-211 3-24 (223)
375 2wwf_A Thymidilate kinase, put 29.8 34 0.0012 30.2 3.4 23 190-212 13-35 (212)
376 3sqw_A ATP-dependent RNA helic 29.5 1.4E+02 0.0049 31.1 8.7 74 203-280 273-349 (579)
377 3dl0_A Adenylate kinase; phosp 29.1 31 0.0011 30.8 2.9 20 190-209 3-22 (216)
378 1zd8_A GTP:AMP phosphotransfer 29.1 28 0.00097 31.4 2.7 20 190-209 10-29 (227)
379 3bs4_A Uncharacterized protein 29.0 96 0.0033 29.0 6.4 49 190-241 24-72 (260)
380 1ukz_A Uridylate kinase; trans 29.0 31 0.0011 30.3 2.9 20 190-209 18-37 (203)
381 2vli_A Antibiotic resistance p 28.4 22 0.00074 30.7 1.7 21 190-210 8-28 (183)
382 3igf_A ALL4481 protein; two-do 28.1 35 0.0012 34.0 3.3 40 191-233 6-46 (374)
383 2v54_A DTMP kinase, thymidylat 28.1 28 0.00097 30.5 2.5 20 190-209 7-26 (204)
384 3foz_A TRNA delta(2)-isopenten 28.0 33 0.0011 33.3 3.0 21 190-210 13-33 (316)
385 1ihu_A Arsenical pump-driving 27.6 61 0.0021 34.2 5.4 32 190-224 330-361 (589)
386 2v26_A Myosin VI; calmodulin-b 27.5 61 0.0021 35.7 5.4 46 167-214 122-167 (784)
387 3exa_A TRNA delta(2)-isopenten 27.5 36 0.0012 33.1 3.2 20 190-209 6-25 (322)
388 2wsm_A Hydrogenase expression/ 27.3 79 0.0027 27.9 5.4 24 188-211 31-54 (221)
389 1lkx_A Myosin IE heavy chain; 27.0 66 0.0022 34.9 5.4 42 173-216 82-123 (697)
390 1nn5_A Similar to deoxythymidy 26.9 41 0.0014 29.7 3.4 23 190-212 12-34 (215)
391 2qor_A Guanylate kinase; phosp 26.7 36 0.0012 30.1 2.9 21 189-209 14-34 (204)
392 1w7j_A Myosin VA; motor protei 26.7 74 0.0025 35.1 5.9 48 167-216 138-185 (795)
393 4akg_A Glutathione S-transfera 26.7 39 0.0013 42.6 4.0 24 186-209 1266-1289(2695)
394 1knq_A Gluconate kinase; ALFA/ 26.6 47 0.0016 28.3 3.6 20 190-209 11-30 (175)
395 3tlx_A Adenylate kinase 2; str 26.5 46 0.0016 30.6 3.7 22 190-211 32-53 (243)
396 2qe7_A ATP synthase subunit al 26.4 1.3E+02 0.0043 31.2 7.2 61 174-240 151-215 (502)
397 1fx0_A ATP synthase alpha chai 26.3 77 0.0026 32.9 5.6 23 186-209 163-185 (507)
398 4db1_A Myosin-7; S1DC, cardiac 26.2 79 0.0027 34.7 5.9 48 166-215 152-199 (783)
399 1kk8_A Myosin heavy chain, str 26.2 77 0.0026 35.1 5.9 48 167-216 151-198 (837)
400 2w58_A DNAI, primosome compone 26.1 1.4E+02 0.0047 25.9 6.7 14 301-314 115-128 (202)
401 1kag_A SKI, shikimate kinase I 26.1 42 0.0014 28.5 3.2 20 190-209 7-26 (173)
402 3eph_A TRNA isopentenyltransfe 26.0 41 0.0014 33.9 3.4 22 190-211 5-26 (409)
403 1fuk_A Eukaryotic initiation f 25.7 2.9E+02 0.0098 23.0 8.8 57 217-279 29-87 (165)
404 3p32_A Probable GTPase RV1496/ 25.7 1.3E+02 0.0044 29.3 7.1 33 190-225 82-114 (355)
405 1m7g_A Adenylylsulfate kinase; 25.6 49 0.0017 29.4 3.6 23 190-212 28-50 (211)
406 3vkg_A Dynein heavy chain, cyt 25.5 97 0.0033 39.8 7.1 61 168-229 888-948 (3245)
407 2ga8_A Hypothetical 39.9 kDa p 25.2 83 0.0029 31.0 5.4 22 190-211 27-48 (359)
408 3l0o_A Transcription terminati 25.1 68 0.0023 32.3 4.7 66 171-243 161-226 (427)
409 2pez_A Bifunctional 3'-phospho 25.1 54 0.0018 28.1 3.7 22 190-211 8-29 (179)
410 1knx_A Probable HPR(Ser) kinas 25.0 37 0.0013 32.9 2.7 22 188-209 148-169 (312)
411 3uie_A Adenylyl-sulfate kinase 25.0 52 0.0018 28.9 3.6 23 190-212 28-50 (200)
412 1rz3_A Hypothetical protein rb 24.9 86 0.0029 27.5 5.1 22 190-211 25-46 (201)
413 1tf7_A KAIC; homohexamer, hexa 24.8 95 0.0032 32.2 6.1 45 190-237 284-328 (525)
414 2p5t_B PEZT; postsegregational 24.8 31 0.0011 31.9 2.2 20 190-209 35-54 (253)
415 2dfs_A Myosin-5A; myosin-V, in 24.8 84 0.0029 36.0 6.0 48 167-216 138-185 (1080)
416 1w9i_A Myosin II heavy chain; 24.7 67 0.0023 35.2 5.0 41 173-215 160-200 (770)
417 3hjn_A DTMP kinase, thymidylat 24.3 66 0.0022 28.5 4.2 20 194-213 7-26 (197)
418 4eun_A Thermoresistant glucoki 23.9 57 0.0019 28.7 3.7 20 190-209 32-51 (200)
419 2r9v_A ATP synthase subunit al 23.3 76 0.0026 32.9 4.8 61 173-239 163-227 (515)
420 1zp6_A Hypothetical protein AT 23.3 45 0.0016 28.8 2.9 18 190-207 12-29 (191)
421 3eaq_A Heat resistant RNA depe 23.2 3.7E+02 0.013 23.5 9.2 72 197-279 15-88 (212)
422 3ake_A Cytidylate kinase; CMP 22.5 62 0.0021 28.3 3.6 22 190-211 5-26 (208)
423 2ycu_A Non muscle myosin 2C, a 22.3 89 0.0031 35.4 5.6 42 173-216 134-175 (995)
424 1g8x_A Myosin II heavy chain f 22.2 88 0.003 35.5 5.5 47 167-215 154-200 (1010)
425 1sky_E F1-ATPase, F1-ATP synth 22.1 4E+02 0.014 27.1 10.0 36 175-212 141-176 (473)
426 3ez9_A Para; DNA binding, wing 21.3 41 0.0014 33.5 2.4 34 191-224 116-152 (403)
427 2bdt_A BH3686; alpha-beta prot 21.2 58 0.002 28.1 3.1 19 190-208 5-23 (189)
428 2l8b_A Protein TRAI, DNA helic 20.9 2.4E+02 0.0084 24.9 7.0 56 170-230 37-92 (189)
429 2f1r_A Molybdopterin-guanine d 20.6 38 0.0013 29.5 1.7 21 191-212 7-27 (171)
430 3nwj_A ATSK2; P loop, shikimat 20.6 69 0.0024 29.7 3.6 23 189-211 50-72 (250)
431 1uj2_A Uridine-cytidine kinase 20.5 58 0.002 29.9 3.1 22 190-211 25-46 (252)
432 1uf9_A TT1252 protein; P-loop, 20.5 56 0.0019 28.4 2.9 19 190-208 11-29 (203)
433 4eaq_A DTMP kinase, thymidylat 20.4 1.2E+02 0.004 27.5 5.2 22 190-211 29-50 (229)
434 1jjv_A Dephospho-COA kinase; P 20.4 61 0.0021 28.5 3.1 18 190-207 5-22 (206)
435 3oaa_A ATP synthase subunit al 20.3 2.6E+02 0.0088 28.9 8.0 61 174-240 151-215 (513)
436 1ypw_A Transitional endoplasmi 20.1 33 0.0011 37.9 1.5 24 188-211 512-535 (806)
437 3tau_A Guanylate kinase, GMP k 20.1 63 0.0021 28.7 3.2 20 190-209 11-30 (208)
No 1
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-50 Score=453.43 Aligned_cols=291 Identities=32% Similarity=0.542 Sum_probs=236.7
Q ss_pred CccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCC
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPS 243 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~ 243 (520)
...+|||||++||+||...+..+ +||||||+||+|||+|+|+++..+.......+|+|||||.+++.||.+||.+|+|+
T Consensus 233 ~~~~Lr~yQ~egv~~l~~~~~~~-~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~ 311 (800)
T 3mwy_W 233 KGGELRDFQLTGINWMAFLWSKG-DNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPD 311 (800)
T ss_dssp CSSCCCTHHHHHHHHHHHHHTTT-CCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTT
T ss_pred CCCCcCHHHHHHHHHHHHHhhcC-CCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCC
Confidence 35699999999999999888877 57799999999999999999998876677889999999999999999999999999
Q ss_pred CeEEEecCCCchhhhHHHHHHh-----hcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch
Q 039292 244 FSVLQYHGAGRTAYSRELSSLA-----KAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s 318 (520)
+++++|+|....+.......+. .......++|+||||+++.+ ....+....|++|||||||++||..+
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~-------~~~~l~~~~w~~vIvDEaH~lkn~~s 384 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILK-------DRAELGSIKWQFMAVDEAHRLKNAES 384 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHH-------THHHHHTSEEEEEEETTGGGGCCSSS
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHh-------hHHHHhcCCcceeehhhhhhhcCchh
Confidence 9999999987654332211111 11223468999999999987 66778889999999999999999999
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCCchHHHHHHHHhhcchhhheeHhH
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGEDRDLIGRMKSILGPFILRRLKSD 398 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~ 398 (520)
..++++..+ ++.+||+|||||++|++.|||++++||.|+.|+....+............+..|+.+++||++||+|.+
T Consensus 385 ~~~~~l~~l--~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~d 462 (800)
T 3mwy_W 385 SLYESLNSF--KVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKD 462 (800)
T ss_dssp HHHHHHTTS--EEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGG
T ss_pred HHHHHHHHh--hhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHh
Confidence 999999988 899999999999999999999999999999998766554333333345668899999999999999999
Q ss_pred HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCcccccc
Q 039292 399 VMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHPLLVRR 477 (520)
Q Consensus 399 v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP~L~~~ 477 (520)
|...||++.+.+++|+||+.|+.+|+.++......+.... ......+++++++||++||||+|+..
T Consensus 463 v~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~-------------~~~~~~~l~~l~~Lrk~~~hp~l~~~ 528 (800)
T 3mwy_W 463 VEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGA-------------KGGHFSLLNIMNELKKASNHPYLFDN 528 (800)
T ss_dssp GTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC-----------------------CTHHHHHHHHHHHHHCGGGSSS
T ss_pred hhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhcc-------------ccchhhHHHHHHHHHHHhcChhhhcc
Confidence 9999999999999999999999999998765432221100 01223689999999999999999865
No 2
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-49 Score=439.28 Aligned_cols=295 Identities=27% Similarity=0.445 Sum_probs=237.2
Q ss_pred CCCCCccCCcHHHHHHHHHHHHHHh----cCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC----CCCCEEEEeCCcchh
Q 039292 160 EDSDFQPVLKPYQLVGVNFLLLLYR----KGIAGAILADEMGLGKTIQAITYLMLLKHLNN----DPGPHLIVCPASVLE 231 (520)
Q Consensus 160 ~~~~~~~~Lr~~Q~~gv~~l~~~~~----~~~~g~ILademGlGKTi~aia~l~~l~~~~~----~~~~~LIV~P~sll~ 231 (520)
+++.+...|||||++||+||+.... .+.+||||||+||+|||+|+|+++..+..... ..+++|||||.+++.
T Consensus 48 ~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sll~ 127 (644)
T 1z3i_X 48 VDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSLVR 127 (644)
T ss_dssp CCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHHHH
T ss_pred eChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHHHH
Confidence 3566778999999999999998763 34468999999999999999999988765433 245699999999999
Q ss_pred hHHHHHHHhcCC-CeEEEecCCCchhhhHHHHHHhh-cCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeC
Q 039292 232 NWERELKKWCPS-FSVLQYHGAGRTAYSRELSSLAK-AGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDE 309 (520)
Q Consensus 232 ~W~~E~~~~~p~-~~v~~~~g~~~~~~~~~~~~~~~-~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDE 309 (520)
||.+||.+|+|. +.++.++|.........+..+.. .+....++|+||||+++.. ....+....|++||+||
T Consensus 128 qW~~E~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~-------~~~~l~~~~~~~vI~DE 200 (644)
T 1z3i_X 128 NWYNEVGKWLGGRVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRL-------HAEVLHKGKVGLVICDE 200 (644)
T ss_dssp HHHHHHHHHHGGGCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHH-------HTTTTTTSCCCEEEETT
T ss_pred HHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHh-------hHHHhhcCCccEEEEEC
Confidence 999999999875 56666666544333333333222 2223357899999999987 44556778999999999
Q ss_pred ccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCC--------------
Q 039292 310 AHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGE-------------- 375 (520)
Q Consensus 310 aH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~-------------- 375 (520)
||++||..++.++++..+ ++.+||+|||||++|++.|||++++|++|+.|++...|...|....
T Consensus 201 aH~ikn~~~~~~~al~~l--~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~ 278 (644)
T 1z3i_X 201 GHRLKNSDNQTYLALNSM--NAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRA 278 (644)
T ss_dssp GGGCCTTCHHHHHHHHHH--CCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHH
T ss_pred ceecCChhhHHHHHHHhc--ccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHH
Confidence 999999999999999998 8999999999999999999999999999999999988877664310
Q ss_pred -chHHHHHHHHhhcchhhheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCC
Q 039292 376 -DRDLIGRMKSILGPFILRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLP 454 (520)
Q Consensus 376 -~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (520)
....+..|+.+++||++||+|.++...||++.+++++|+||+.|+++|+.++....... . ......
T Consensus 279 ~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~-----~--------~~~g~~ 345 (644)
T 1z3i_X 279 AGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVE-----S--------LQTGKI 345 (644)
T ss_dssp HHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGG-----S--------SCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHH-----H--------HhcCcc
Confidence 12356789999999999999999999999999999999999999999998876532110 0 001112
Q ss_pred hhHHHHHHHHHhhhccCccccc
Q 039292 455 QRQISNYFVQFRKIANHPLLVR 476 (520)
Q Consensus 455 ~~~i~~~l~~LRkicnHP~L~~ 476 (520)
...++..+++|||+||||.|+.
T Consensus 346 ~~~~l~~l~~Lrk~c~hp~l~~ 367 (644)
T 1z3i_X 346 SVSSLSSITSLKKLCNHPALIY 367 (644)
T ss_dssp CHHHHHHHHHHHHHHHCTHHHH
T ss_pred chhHHHHHHHHHHHhCCHHHHH
Confidence 3467889999999999999985
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=3.7e-45 Score=392.20 Aligned_cols=281 Identities=30% Similarity=0.590 Sum_probs=235.4
Q ss_pred CCCCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHh
Q 039292 161 DSDFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 161 ~~~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~ 240 (520)
|+.+...|+|||.+|+.||......+ +||||||+||+|||+++++++..+.. .+..+++|||||.+++.||.+||.+|
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~-~~~ilad~~GlGKT~~ai~~i~~~~~-~~~~~~~LIv~P~~l~~qw~~e~~~~ 108 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLG-FGICLADDMGLGKTLQTIAVFSDAKK-ENELTPSLVICPLSVLKNWEEELSKF 108 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTT-CCEEECCCTTSCHHHHHHHHHHHHHH-TTCCSSEEEEECSTTHHHHHHHHHHH
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCC-CCEEEEeCCCCcHHHHHHHHHHHHHh-cCCCCCEEEEccHHHHHHHHHHHHHH
Confidence 67788899999999999998877766 57899999999999999999988764 45678999999999999999999999
Q ss_pred cCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHH
Q 039292 241 CPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYR 320 (520)
Q Consensus 241 ~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~ 320 (520)
+|..++.+++|..... ....++|+|+||+++.+. .. +....|++||+||||+++|..+.+
T Consensus 109 ~~~~~v~~~~g~~~~~------------~~~~~~ivi~t~~~l~~~-------~~-l~~~~~~~vIvDEaH~~kn~~~~~ 168 (500)
T 1z63_A 109 APHLRFAVFHEDRSKI------------KLEDYDIILTTYAVLLRD-------TR-LKEVEWKYIVIDEAQNIKNPQTKI 168 (500)
T ss_dssp CTTSCEEECSSSTTSC------------CGGGSSEEEEEHHHHTTC-------HH-HHTCCEEEEEEETGGGGSCTTSHH
T ss_pred CCCceEEEEecCchhc------------cccCCcEEEeeHHHHhcc-------ch-hcCCCcCEEEEeCccccCCHhHHH
Confidence 9999999998876321 112469999999999873 22 677899999999999999999999
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhc---CCchHHHHHHHHhhcchhhheeHh
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLN---GEDRDLIGRMKSILGPFILRRLKS 397 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~---~~~~~~~~~L~~~l~~~~lRR~k~ 397 (520)
++++..+ .+.++|+|||||++|++.|||++++|+.|+.|++...|...|.. ..+......|+.+++|+++||++.
T Consensus 169 ~~~l~~l--~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~ 246 (500)
T 1z63_A 169 FKAVKEL--KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKY 246 (500)
T ss_dssp HHHHHTS--CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTT
T ss_pred HHHHHhh--ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeeccc
Confidence 9999987 78899999999999999999999999999999998877665543 244566788999999999999997
Q ss_pred H--HhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCcccc
Q 039292 398 D--VMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHPLLV 475 (520)
Q Consensus 398 ~--v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP~L~ 475 (520)
+ +...||++.+.+++|+|++.|+.+|+.+.......+ ... .+......++..+++||++|+||.|+
T Consensus 247 ~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~l~~lr~~~~~p~l~ 314 (500)
T 1z63_A 247 DKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNI-------DSV-----TGIKRKGMILSTLLKLKQIVDHPALL 314 (500)
T ss_dssp CHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTT-------TTC-----CTHHHHHHHHHHHHHHHHHTTCTHHH
T ss_pred ccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHH-------Hhh-----hcccchHHHHHHHHHHHHHhCCHHHh
Confidence 6 667899999999999999999999998876543211 000 01112346788999999999999998
Q ss_pred cc
Q 039292 476 RR 477 (520)
Q Consensus 476 ~~ 477 (520)
..
T Consensus 315 ~~ 316 (500)
T 1z63_A 315 KG 316 (500)
T ss_dssp HC
T ss_pred cC
Confidence 64
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.96 E-value=2.9e-30 Score=295.62 Aligned_cols=247 Identities=18% Similarity=0.197 Sum_probs=187.0
Q ss_pred CccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCC
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPS 243 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~ 243 (520)
....|+|||..++.|++... .+||||||+||+|||+++++++..+.. .+..+++|||||.+++.||..||.+|+ +
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~---~~~~LLad~tGlGKTi~Ai~~i~~l~~-~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~ 224 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH---APRVLLADEVGLGKTIEAGMILHQQLL-SGAAERVLIIVPETLQHQWLVEMLRRF-N 224 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS---SCEEEECCCTTSCHHHHHHHHHHHHHH-TSSCCCEEEECCTTTHHHHHHHHHHHS-C
T ss_pred CCCCCcHHHHHHHHHHHHhc---CCCEEEECCCCCcHHHHHHHHHHHHHH-hCCCCeEEEEeCHHHHHHHHHHHHHHh-C
Confidence 34689999999999998632 357899999999999999999987765 556679999999999999999999888 6
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch---HH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS---YR 320 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s---~~ 320 (520)
..+.+++|....... .........++|+|+||+.+.+... ....+....|++|||||||+++|..+ ..
T Consensus 225 l~v~v~~~~~~~~~~-----~~~~~~~~~~dIvI~T~~~L~~~~~----~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~ 295 (968)
T 3dmq_A 225 LRFALFDDERYAEAQ-----HDAYNPFDTEQLVICSLDFARRSKQ----RLEHLCEAEWDLLVVDEAHHLVWSEDAPSRE 295 (968)
T ss_dssp CCCEECCHHHHHHHH-----HTTCSSSTTCSEEEECHHHHHTSTT----TTHHHHTSCCCEEEECCSSCCCCBTTBCCHH
T ss_pred CCEEEEccchhhhhh-----hhcccccccCCEEEEcHHHHhhCHH----HHHHhhhcCCCEEEehhhHhhcCCCCcchHH
Confidence 777788765422110 0111222357999999999976321 23456777999999999999998664 44
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCC---------------ch--------
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGE---------------DR-------- 377 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~---------------~~-------- 377 (520)
++.+..+..+++++|+|||||++|++.|+|++++|+.|+.|++...|...+.... ..
T Consensus 296 ~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~ 375 (968)
T 3dmq_A 296 YQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGE 375 (968)
T ss_dssp HHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTT
T ss_pred HHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 7888887667889999999999999999999999999999999877664432100 00
Q ss_pred -----------------------HHHHHHHHhh-----cchhhheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHH
Q 039292 378 -----------------------DLIGRMKSIL-----GPFILRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRV 425 (520)
Q Consensus 378 -----------------------~~~~~L~~~l-----~~~~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~ 425 (520)
.....+..++ ..+++|+++..+. .+|.+..+.+.+++++.++..|..
T Consensus 376 ~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~-~~p~r~~~~~~l~~~~~~~~~~~~ 450 (968)
T 3dmq_A 376 MIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVK-GFPKRELHTIKLPLPTQYQTAIKV 450 (968)
T ss_dssp TTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCC-CCCCCCCCEEEECCCHHHHHHHHH
T ss_pred HhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhc-ccChhheEeeecCCCHHHHHHHHH
Confidence 0111222222 3456677676664 689999999999999999998874
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.90 E-value=1e-22 Score=215.00 Aligned_cols=215 Identities=14% Similarity=0.187 Sum_probs=150.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc--CC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC--PS 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~--p~ 243 (520)
.|+|||.+++.|++. + ++||+++||+|||++++.++..+.. ...+++|||||. .++.||.+++.+|+ |.
T Consensus 9 ~l~~~Q~~~i~~~~~----~--~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T--NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGG----S--CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhh----C--CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 799999999999973 3 5799999999999999999876644 456789999997 78999999999998 56
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHH--
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRW-- 321 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~-- 321 (520)
..+..++|............ ..+|+|+||+.+..... ...+....|++||+||||++++..+...
T Consensus 81 ~~v~~~~g~~~~~~~~~~~~--------~~~ivv~T~~~l~~~~~-----~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~ 147 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKAWA--------RAKVIVATPQTIENDLL-----AGRISLEDVSLIVFDEAHRAVGNYAYVFIA 147 (494)
T ss_dssp GGEEEECSCSCHHHHHHHHH--------HCSEEEECHHHHHHHHH-----TTSCCTTSCSEEEEETGGGCSTTCHHHHHH
T ss_pred hheEEeeCCcchhhhhhhcc--------CCCEEEecHHHHHHHHh-----cCCcchhhceEEEEECCcccCCCCcHHHHH
Confidence 68999998865543322211 35999999999987432 1223456799999999999987543222
Q ss_pred HHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCC---ChHHHHHHhhcC--------CchHHHHHHHHhhcch
Q 039292 322 KNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFA---TEDVDLKKLLNG--------EDRDLIGRMKSILGPF 390 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~---~~~~~~~~~~~~--------~~~~~~~~L~~~l~~~ 390 (520)
..+.. ..+..++|+|||||. |+..+++.++.++.+.... ....+...+... ........+...+.++
T Consensus 148 ~~~~~-~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (494)
T 1wp9_A 148 REYKR-QAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREM 225 (494)
T ss_dssp HHHHH-HCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred HHHHh-cCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHH
Confidence 11111 125778999999999 7788888888888754321 111111112111 1123455566666777
Q ss_pred hhheeHhHHhhhcC
Q 039292 391 ILRRLKSDVMQQLV 404 (520)
Q Consensus 391 ~lRR~k~~v~~~LP 404 (520)
+.++.+......+.
T Consensus 226 ~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 226 LRDALKPLAETGLL 239 (494)
T ss_dssp HHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhccc
Confidence 77776666555443
No 6
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.85 E-value=4.7e-21 Score=203.40 Aligned_cols=194 Identities=21% Similarity=0.265 Sum_probs=149.3
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPS 243 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~ 243 (520)
...|+|||.+++.++.. + +++||+++||+|||++++.++..+ .+++|||||. .++.||.++|.+| +
T Consensus 91 ~~~l~~~Q~~ai~~i~~----~-~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~--~ 157 (472)
T 2fwr_A 91 EISLRDYQEKALERWLV----D-KRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF--G 157 (472)
T ss_dssp CCCBCHHHHHHHHHHTT----T-TEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG--C
T ss_pred CCCcCHHHHHHHHHHHh----c-CCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC--C
Confidence 45899999999998863 3 347999999999999998887654 5789999998 8899999999995 4
Q ss_pred Ce-EEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHH
Q 039292 244 FS-VLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWK 322 (520)
Q Consensus 244 ~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~ 322 (520)
.. +.+++|.... ..+|+|+||+.+... ...+ ...|++||+||||++.+....
T Consensus 158 ~~~v~~~~g~~~~----------------~~~Ivv~T~~~l~~~-------~~~~-~~~~~liIvDEaH~~~~~~~~--- 210 (472)
T 2fwr_A 158 EEYVGEFSGRIKE----------------LKPLTVSTYDSAYVN-------AEKL-GNRFMLLIFDEVHHLPAESYV--- 210 (472)
T ss_dssp GGGEEEBSSSCBC----------------CCSEEEEEHHHHHHT-------HHHH-TTTCSEEEEETGGGTTSTTTH---
T ss_pred CcceEEECCCcCC----------------cCCEEEEEcHHHHHH-------HHHh-cCCCCEEEEECCcCCCChHHH---
Confidence 56 8888876542 258999999998763 2222 236999999999999876543
Q ss_pred HHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCCCCChHHHHHHhhcCCchHHHHHHHHhhcchhhheeHhHHhhh
Q 039292 323 NLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDLFATEDVDLKKLLNGEDRDLIGRMKSILGPFILRRLKSDVMQQ 402 (520)
Q Consensus 323 ~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~ 402 (520)
.+.... .+.++++|||||.+++..+ ..|..+++|.+.++...++...
T Consensus 211 ~~~~~~-~~~~~l~lSATp~~~~~~~--------------------------------~~l~~~~~~~~~~~~~~~l~~~ 257 (472)
T 2fwr_A 211 QIAQMS-IAPFRLGLTATFEREDGRH--------------------------------EILKEVVGGKVFELFPDSLAGK 257 (472)
T ss_dssp HHHHTC-CCSEEEEEESCCCCTTSGG--------------------------------GSHHHHTCCEEEECCHHHHTSC
T ss_pred HHHHhc-CCCeEEEEecCccCCCCHH--------------------------------HHHHHHhCCeEeecCHHHHhcC
Confidence 233322 6788999999999754211 1345567888888877777544
Q ss_pred -cCCcEEEEEEeCCCHHHHHHHHHHHHHHH
Q 039292 403 -LVPKIQWVEYVTMERPQEDAYRVAIEEYR 431 (520)
Q Consensus 403 -LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~ 431 (520)
+++.....+.+.+++.++..|..+...+.
T Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (472)
T 2fwr_A 258 HLAKYTIKRIFVPLAEDERVEYEKREKVYK 287 (472)
T ss_dssp CCCSEEECCEEECCCHHHHHHTTTTTHHHH
T ss_pred cCCCeEEEEEEcCCCHHHHHHHHHHHHHHH
Confidence 78888888999999999999987766544
No 7
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.82 E-value=7.6e-20 Score=180.99 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=117.3
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC--
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP-- 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p-- 242 (520)
..|+|||..++.+++.. +.+||+++||+|||+++++++..... ...+++|||||. .++.||.+++.+|..
T Consensus 112 ~~l~~~Q~~ai~~~l~~-----~~~ll~~~tGsGKT~~~~~~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN-----RRRILNLPTSAGRSLIQALLARYYLE--NYEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHH-----SEEEECCCTTSCHHHHHHHHHHHHHH--HCSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhc-----CCeEEEcCCCCCcHHHHHHHHHHHHH--cCCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 37999999999988753 24599999999999999887765543 234589999997 678999999999964
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWK 322 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~ 322 (520)
...+..+.|...... ......+|+|+||+.+.+... .....+++||+||||++.+. .+.
T Consensus 185 ~~~~~~~~~~~~~~~----------~~~~~~~I~v~T~~~l~~~~~--------~~~~~~~~vIiDEaH~~~~~---~~~ 243 (282)
T 1rif_A 185 HAMIKKIGGGASKDD----------KYKNDAPVVVGTWQTVVKQPK--------EWFSQFGMMMNDECHLATGK---SIS 243 (282)
T ss_dssp GGGEEECSTTCSSTT----------CCCTTCSEEEECHHHHTTSCG--------GGGGGEEEEEEETGGGCCHH---HHH
T ss_pred cceEEEEeCCCcchh----------hhccCCcEEEEchHHHHhhHH--------HHHhhCCEEEEECCccCCcc---cHH
Confidence 345555444432211 112357999999999876321 12346899999999999753 233
Q ss_pred HHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCC
Q 039292 323 NLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 323 ~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p 358 (520)
.+........++++|||||. |...+++.++.+++|
T Consensus 244 ~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 244 SIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp HHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred HHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 33222225788999999996 456788888888776
No 8
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.78 E-value=2.4e-18 Score=185.44 Aligned_cols=174 Identities=14% Similarity=0.167 Sum_probs=122.3
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC--CCCCEEEEeCC-cchhhHHHHHHHhcC-
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN--DPGPHLIVCPA-SVLENWERELKKWCP- 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~--~~~~~LIV~P~-sll~~W~~E~~~~~p- 242 (520)
+|+|||..++.+++ .+ +.+|++++||+|||++++..+........ ..+++|||||+ .++.||.+++.++++
T Consensus 4 ~~~~~Q~~~i~~~~----~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 4 KPRNYQLELALPAK----KG-KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCHHHHHHHHHHH----TT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHh----CC-CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 79999999999987 34 46799999999999998877765544222 16789999998 788999999999986
Q ss_pred -CCeEEEecCCCchhhh-HHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHH-hhcCccEEEEeCccccCCcchH
Q 039292 243 -SFSVLQYHGAGRTAYS-RELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKIL-KRWRWSCVLMDEAHALKDKNSY 319 (520)
Q Consensus 243 -~~~v~~~~g~~~~~~~-~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l-~~~~~~~vIiDEaH~ikn~~s~ 319 (520)
++.+..++|....... ..+.. +.+|+|+||+.+...... ..+ ....|++||+||||++.+..+.
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~--------~~~i~v~T~~~l~~~~~~-----~~~~~~~~~~~vViDEah~~~~~~~~ 145 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIE--------DNDIIILTPQILVNNLNN-----GAIPSLSVFTLMIFDECHNTSKNHPY 145 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHH--------HCSEEEECHHHHHHHHHT-----SSSCCGGGCSEEEETTGGGCSTTCHH
T ss_pred CCcEEEEEcCCCcchhhHHHHhc--------CCCEEEECHHHHHHHHhc-----CcccccccCCEEEEECccccCCcchH
Confidence 6788888887643322 11111 359999999999774421 112 3346899999999999886642
Q ss_pred HHHHHHHHhh-------hcCcEEEEeccCCCCCH-------HHHHHHHHHhCC
Q 039292 320 RWKNLMSVAR-------NANQRLMLTGTPLQNDL-------HELWSLLEFMMP 358 (520)
Q Consensus 320 ~~~~l~~l~~-------~~~~rl~LTgTPi~n~~-------~el~~ll~fl~p 358 (520)
.......+.. ...++++|||||.+++. ..+..+..++..
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~ 198 (555)
T 3tbk_A 146 NQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDA 198 (555)
T ss_dssp HHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCC
Confidence 2222122211 22579999999998873 444445555553
No 9
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.77 E-value=5.3e-18 Score=188.49 Aligned_cols=176 Identities=15% Similarity=0.163 Sum_probs=123.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC--CCCCEEEEeCC-cchhhHHHHHHHhcC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN--DPGPHLIVCPA-SVLENWERELKKWCP 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~--~~~~~LIV~P~-sll~~W~~E~~~~~p 242 (520)
..|+|||.+++.|++ .+ +++|++++||+|||++++..+........ ..+++|||+|+ .++.||.+++.++++
T Consensus 12 ~~lr~~Q~~~i~~~l----~g-~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~ 86 (696)
T 2ykg_A 12 FKPRNYQLELALPAM----KG-KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE 86 (696)
T ss_dssp -CCCHHHHHHHHHHH----TT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHH----cC-CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc
Confidence 479999999999987 34 46799999999999998877764433222 23789999997 888999999999987
Q ss_pred --CCeEEEecCCCchhh-hHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHH-hhcCccEEEEeCccccCCcch
Q 039292 243 --SFSVLQYHGAGRTAY-SRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKIL-KRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 243 --~~~v~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l-~~~~~~~vIiDEaH~ikn~~s 318 (520)
++.+..++|...... ...+.. ..+|+|+||+.+.+.... ..+ ....|++|||||||++.+..+
T Consensus 87 ~~~~~v~~~~g~~~~~~~~~~~~~--------~~~Iiv~Tp~~L~~~l~~-----~~~~~l~~~~~vViDEaH~~~~~~~ 153 (696)
T 2ykg_A 87 RHGYRVTGISGATAENVPVEQIVE--------NNDIIILTPQILVNNLKK-----GTIPSLSIFTLMIFDECHNTSKQHP 153 (696)
T ss_dssp TTTCCEEEECSSSCSSSCHHHHHH--------TCSEEEECHHHHHHHHHT-----TSSCCGGGCSEEEEETGGGCSTTCH
T ss_pred cCCceEEEEeCCccccccHHHhcc--------CCCEEEECHHHHHHHHhc-----CcccccccccEEEEeCCCcccCccc
Confidence 678888887653322 222211 369999999999874321 112 344689999999999987664
Q ss_pred HHHHHHHHHh-------hhcCcEEEEeccCCCCC-------HHHHHHHHHHhCCC
Q 039292 319 YRWKNLMSVA-------RNANQRLMLTGTPLQND-------LHELWSLLEFMMPD 359 (520)
Q Consensus 319 ~~~~~l~~l~-------~~~~~rl~LTgTPi~n~-------~~el~~ll~fl~p~ 359 (520)
........+. ....++++|||||..++ +..++.++..++..
T Consensus 154 ~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~ 208 (696)
T 2ykg_A 154 YNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDAS 208 (696)
T ss_dssp HHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCc
Confidence 3322211221 13478999999999544 45555555555443
No 10
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.77 E-value=3.2e-18 Score=164.98 Aligned_cols=142 Identities=24% Similarity=0.285 Sum_probs=105.7
Q ss_pred CccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP 242 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p 242 (520)
+...|+|||..++.+++ .+ +.+|++++||+|||+++++++..+ .+++|||||. .++.||.+++.+|
T Consensus 90 ~~~~l~~~Q~~ai~~~~----~~-~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~-- 156 (237)
T 2fz4_A 90 AEISLRDYQEKALERWL----VD-KRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF-- 156 (237)
T ss_dssp CCCCCCHHHHHHHHHHT----TT-SEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG--
T ss_pred CCCCcCHHHHHHHHHHH----hC-CCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC--
Confidence 34589999999999876 23 347999999999999998877543 5789999998 7789999999994
Q ss_pred CCe-EEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHH
Q 039292 243 SFS-VLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRW 321 (520)
Q Consensus 243 ~~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~ 321 (520)
+.. +..+.|.... ..+|+|+||+.+... ...+ ...|++|||||||++.+.. +
T Consensus 157 ~~~~v~~~~g~~~~----------------~~~i~v~T~~~l~~~-------~~~~-~~~~~llIiDEaH~l~~~~---~ 209 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE----------------LKPLTVSTYDSAYVN-------AEKL-GNRFMLLIFDEVHHLPAES---Y 209 (237)
T ss_dssp CGGGEEEESSSCBC----------------CCSEEEEEHHHHHHT-------HHHH-TTTCSEEEEECSSCCCTTT---H
T ss_pred CCCeEEEEeCCCCC----------------cCCEEEEeHHHHHhh-------HHHh-cccCCEEEEECCccCCChH---H
Confidence 455 7777776532 358999999998763 2222 2469999999999997643 2
Q ss_pred HHHHHHhhhcCcEEEEeccCCCCCH
Q 039292 322 KNLMSVARNANQRLMLTGTPLQNDL 346 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi~n~~ 346 (520)
+.+.... ...++++|||||.+++-
T Consensus 210 ~~i~~~~-~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 210 VQIAQMS-IAPFRLGLTATFEREDG 233 (237)
T ss_dssp HHHHHTC-CCSEEEEEEESCC----
T ss_pred HHHHHhc-cCCEEEEEecCCCCCCC
Confidence 3343332 67889999999998753
No 11
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.77 E-value=6.5e-19 Score=192.23 Aligned_cols=170 Identities=14% Similarity=0.220 Sum_probs=104.9
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC------CCCCCEEEEeC-CcchhhHH-HH
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN------NDPGPHLIVCP-ASVLENWE-RE 236 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~------~~~~~~LIV~P-~sll~~W~-~E 236 (520)
...|+|||..++++++.....+.+++||+++||+|||++++.++..+.... ...+++||||| ..|+.||. ++
T Consensus 176 ~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 176 GYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp ---CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 458999999999999987777666689999999999999999887775522 15688999999 67789999 78
Q ss_pred HHHhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc
Q 039292 237 LKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK 316 (520)
Q Consensus 237 ~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~ 316 (520)
|..|.+.. ..+.+.. .....+|+|+||+.+....... .....+....|++||+||||++.+.
T Consensus 256 ~~~~~~~~--~~~~~~~---------------~~~~~~I~v~T~~~l~~~~~~~-~~~~~~~~~~~~lvIiDEaH~~~~~ 317 (590)
T 3h1t_A 256 FTPFGDAR--HKIEGGK---------------VVKSREIYFAIYQSIASDERRP-GLYKEFPQDFFDLIIIDECHRGSAR 317 (590)
T ss_dssp CTTTCSSE--EECCC-----------------CCSSCSEEEEEGGGC------C-CGGGGSCTTSCSEEEESCCC-----
T ss_pred HHhcchhh--hhhhccC---------------CCCCCcEEEEEhhhhccccccc-cccccCCCCccCEEEEECCcccccc
Confidence 88876532 2222211 1225699999999987642110 0122234456999999999999765
Q ss_pred chHHHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHH
Q 039292 317 NSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLL 353 (520)
Q Consensus 317 ~s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll 353 (520)
....++.+.... ...++++|||||..+...+++.++
T Consensus 318 ~~~~~~~il~~~-~~~~~l~lTATP~~~~~~~~~~~f 353 (590)
T 3h1t_A 318 DNSNWREILEYF-EPAFQIGMTATPLREDNRDTYRYF 353 (590)
T ss_dssp ----CHHHHHHS-TTSEEEEEESSCSCTTTHHHHHHS
T ss_pred chHHHHHHHHhC-CcceEEEeccccccccchhHHHHc
Confidence 433444444432 567899999999998877765543
No 12
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.76 E-value=6.5e-18 Score=182.30 Aligned_cols=162 Identities=15% Similarity=0.138 Sum_probs=112.7
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC--CCCCEEEEeCC-cchhhHHHHHHHhcC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN--DPGPHLIVCPA-SVLENWERELKKWCP 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~--~~~~~LIV~P~-sll~~W~~E~~~~~p 242 (520)
.+|+|||..++.+++ .+ ..+|++++||+|||++++..+........ ..+++|||||. .++.||.+++.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~----~~-~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 6 KKARSYQIELAQPAI----NG-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp --CCHHHHHHHHHHH----TT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHH----cC-CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 379999999999997 34 45799999999999998877755543222 16789999997 788999999999987
Q ss_pred --CCeEEEecCCCchhhh-HHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHH-hhcCccEEEEeCccccCCcch
Q 039292 243 --SFSVLQYHGAGRTAYS-RELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKIL-KRWRWSCVLMDEAHALKDKNS 318 (520)
Q Consensus 243 --~~~v~~~~g~~~~~~~-~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l-~~~~~~~vIiDEaH~ikn~~s 318 (520)
++.+..++|....... ..+.. ..+|+|+||+.+...... ..+ ....|++||+||||++.+...
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~--------~~~i~v~T~~~l~~~~~~-----~~~~~~~~~~~vViDEah~~~~~~~ 147 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIE--------DSDIIVVTPQILVNSFED-----GTLTSLSIFTLMIFDECHNTTGNHP 147 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHH--------HCSEEEECHHHHHHHHHS-----SSCCCSTTCSEEEEETGGGCSTTSH
T ss_pred ccCceEEEEeCCCCcchhHHHhhC--------CCCEEEECHHHHHHHHHh-----CcccccccCCEEEEECCcccCCcch
Confidence 7888888887633221 11111 359999999999874321 112 334689999999999987654
Q ss_pred HHHHHHHHHh-------hhcCcEEEEeccCCCCCH
Q 039292 319 YRWKNLMSVA-------RNANQRLMLTGTPLQNDL 346 (520)
Q Consensus 319 ~~~~~l~~l~-------~~~~~rl~LTgTPi~n~~ 346 (520)
....+..+. ....++++|||||.+++.
T Consensus 148 -~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~ 181 (556)
T 4a2p_A 148 -YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNA 181 (556)
T ss_dssp -HHHHHHHHHHHHHCC---CCEEEEEESCCCCTTC
T ss_pred -HHHHHHHHHHhhhcccCCCCeEEEEeCCcccCch
Confidence 222222221 123679999999988764
No 13
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.76 E-value=2.4e-17 Score=185.92 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=118.7
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC--CCCCEEEEeCC-cchhhHHHHHHHhc
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN--DPGPHLIVCPA-SVLENWERELKKWC 241 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~--~~~~~LIV~P~-sll~~W~~E~~~~~ 241 (520)
...|+|||..++.+++ .+ ..+|++++||+|||++++..+........ ..+++|||||. .++.||.++|.+|+
T Consensus 246 ~~~l~~~Q~~~i~~~l----~~-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 246 TKKARSYQIELAQPAI----NG-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp --CCCHHHHHHHHHHH----TT-CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----hC-CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 3579999999999987 34 45799999999999998877765544222 17789999996 58899999999998
Q ss_pred C--CCeEEEecCCCchhhh-HHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHH-hhcCccEEEEeCccccCCcc
Q 039292 242 P--SFSVLQYHGAGRTAYS-RELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKIL-KRWRWSCVLMDEAHALKDKN 317 (520)
Q Consensus 242 p--~~~v~~~~g~~~~~~~-~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l-~~~~~~~vIiDEaH~ikn~~ 317 (520)
+ ++.+..++|....... ..+.. ..+|+|+||+.+...... ..+ ....|++|||||||++.+..
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~--------~~~Ivv~Tp~~l~~~l~~-----~~~~~~~~~~~iViDEaH~~~~~~ 387 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIE--------DSDIIVVTPQILVNSFED-----GTLTSLSIFTLMIFDECHNTTGNH 387 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHH--------TCSEEEECHHHHHHHHHS-----SSCCCGGGCSEEEETTGGGCSTTS
T ss_pred ccCCceEEEEeCCcchhhhHHHhhC--------CCCEEEEchHHHHHHHHh-----ccccccccCCEEEEECccccCCCc
Confidence 7 7888888887643321 11111 469999999999874321 112 23458999999999998865
Q ss_pred hHHHHHHHHHh-------hhcCcEEEEeccCCCCCHHHHHHHHH
Q 039292 318 SYRWKNLMSVA-------RNANQRLMLTGTPLQNDLHELWSLLE 354 (520)
Q Consensus 318 s~~~~~l~~l~-------~~~~~rl~LTgTPi~n~~~el~~ll~ 354 (520)
+ ....+..+. ....++++|||||.+++..++...++
T Consensus 388 ~-~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~ 430 (797)
T 4a2q_A 388 P-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIE 430 (797)
T ss_dssp H-HHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHH
T ss_pred c-HHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHH
Confidence 4 222222221 12267999999999877655544433
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.76 E-value=3.2e-18 Score=183.35 Aligned_cols=166 Identities=13% Similarity=0.111 Sum_probs=121.2
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHh--cC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKW--CP 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~--~p 242 (520)
..|+|||..++.+++.. .++||+++||+|||++++.++..... ...+++|||||. .+..||.++|.+| ++
T Consensus 112 ~~l~~~Q~~ai~~~~~~-----~~~ll~~~tGsGKT~~~~~~~~~~~~--~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN-----RRRILNLPTSAGRSLIQALLARYYLE--NYEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHH-----SEEEEECCSTTTHHHHHHHHHHHHHH--HCSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHHHHHh--CCCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 48999999999998843 35799999999999999877765543 234599999997 6789999999999 56
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWK 322 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~ 322 (520)
...+..++|....... .....+|+|+||+.+.... ......|++||+||||++.+. .+.
T Consensus 185 ~~~v~~~~~~~~~~~~----------~~~~~~I~i~T~~~l~~~~--------~~~~~~~~liIiDE~H~~~~~---~~~ 243 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK----------YKNDAPVVVGTWQTVVKQP--------KEWFSQFGMMMNDECHLATGK---SIS 243 (510)
T ss_dssp GGGEEECGGGCCTTGG----------GCTTCSEEEEEHHHHTTSC--------GGGGGGEEEEEEETGGGCCHH---HHH
T ss_pred ccceEEEecCCccccc----------cccCCcEEEEeHHHHhhch--------hhhhhcCCEEEEECCcCCCcc---cHH
Confidence 6677777766433221 1235799999999887631 122336899999999999762 233
Q ss_pred HHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCCCC
Q 039292 323 NLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMPDL 360 (520)
Q Consensus 323 ~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p~~ 360 (520)
.+......+.++++||||| .+...+++.+..++.+..
T Consensus 244 ~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~ 280 (510)
T 2oca_A 244 SIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIF 280 (510)
T ss_dssp HHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEE
T ss_pred HHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeE
Confidence 3322222567899999999 566667788777776654
No 15
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.76 E-value=1.4e-17 Score=190.38 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=118.9
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC--CCCCEEEEeCCc-chhhHHHHHHHhc
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN--DPGPHLIVCPAS-VLENWERELKKWC 241 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~--~~~~~LIV~P~s-ll~~W~~E~~~~~ 241 (520)
...|+|||..++.+++ .| ..+|++++||+|||++++..+........ ..+++|||||+. ++.||.++|.+|+
T Consensus 246 ~~~~r~~Q~~ai~~il----~g-~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 246 TKKARSYQIELAQPAI----NG-KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp --CCCHHHHHHHHHHH----TT-CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cC-CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 3479999999999997 34 45799999999999988777654432111 167899999965 8899999999998
Q ss_pred C--CCeEEEecCCCchhh-hHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHH-hhcCccEEEEeCccccCCcc
Q 039292 242 P--SFSVLQYHGAGRTAY-SRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKIL-KRWRWSCVLMDEAHALKDKN 317 (520)
Q Consensus 242 p--~~~v~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l-~~~~~~~vIiDEaH~ikn~~ 317 (520)
+ ++.+..++|...... ...+.. ..+|+|+||+++...... ..+ ....|++||+||||++.+..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~--------~~~IvI~Tp~~L~~~l~~-----~~~~~l~~~~liViDEaH~~~~~~ 387 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIE--------DSDIIVVTPQILVNSFED-----GTLTSLSIFTLMIFDECHNTTGNH 387 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHH--------HCSEEEECHHHHHHHHHS-----SSCCCGGGCSEEEEETGGGCSTTC
T ss_pred cccCceEEEEECCcchhhHHHHhcc--------CCCEEEecHHHHHHHHHc-----CccccccCCCEEEEECccccCCCc
Confidence 7 788888888753322 111111 359999999999874321 111 23358999999999999866
Q ss_pred hHHHHHHHHHhh-------hcCcEEEEeccCCCCCHHHHHHHHHH
Q 039292 318 SYRWKNLMSVAR-------NANQRLMLTGTPLQNDLHELWSLLEF 355 (520)
Q Consensus 318 s~~~~~l~~l~~-------~~~~rl~LTgTPi~n~~~el~~ll~f 355 (520)
+ ....+..+.. ...++++|||||.+++..++...++.
T Consensus 388 ~-~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~ 431 (936)
T 4a2w_A 388 P-YNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEH 431 (936)
T ss_dssp H-HHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHH
T ss_pred c-HHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHH
Confidence 5 2222222211 22679999999998887666555443
No 16
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.72 E-value=7.4e-17 Score=151.44 Aligned_cols=166 Identities=17% Similarity=0.171 Sum_probs=111.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh---CCCCCCEEEEeCC-cchhhHHHHHHHhc
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL---NNDPGPHLIVCPA-SVLENWERELKKWC 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~---~~~~~~~LIV~P~-sll~~W~~E~~~~~ 241 (520)
..++|||..++.++. .+ +.+|+..+||+|||++++..+...... ......+|||||. .+..||.+++.+++
T Consensus 22 ~~~~~~Q~~~i~~~~----~~-~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 22 TTPTPIQAAALPLAL----EG-KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp CSCCHHHHHHHHHHH----TT-CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHc----CC-CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 368999999999887 34 457999999999999865544333211 1345679999997 67899999999999
Q ss_pred CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-hHH
Q 039292 242 PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-SYR 320 (520)
Q Consensus 242 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-s~~ 320 (520)
+...+..+.|......... .... ..+|+|+|++.+..... ...+....+++||+||||++.+.. ...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~--~~~~-----~~~i~v~T~~~l~~~~~-----~~~~~~~~~~~iViDEah~~~~~~~~~~ 164 (207)
T 2gxq_A 97 PHLKVVAVYGGTGYGKQKE--ALLR-----GADAVVATPGRALDYLR-----QGVLDLSRVEVAVLDEADEMLSMGFEEE 164 (207)
T ss_dssp TTSCEEEECSSSCSHHHHH--HHHH-----CCSEEEECHHHHHHHHH-----HTSSCCTTCSEEEEESHHHHHHTTCHHH
T ss_pred hcceEEEEECCCChHHHHH--HhhC-----CCCEEEECHHHHHHHHH-----cCCcchhhceEEEEEChhHhhccchHHH
Confidence 8888888877654322111 1111 46999999999876432 112233468999999999885322 112
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCCCHHHH
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQNDLHEL 349 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n~~~el 349 (520)
...+........+.+++|||+- +.+.++
T Consensus 165 ~~~i~~~~~~~~~~i~~SAT~~-~~~~~~ 192 (207)
T 2gxq_A 165 VEALLSATPPSRQTLLFSATLP-SWAKRL 192 (207)
T ss_dssp HHHHHHTSCTTSEEEEECSSCC-HHHHHH
T ss_pred HHHHHHhCCccCeEEEEEEecC-HHHHHH
Confidence 2222222223566899999984 334443
No 17
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.71 E-value=8.9e-17 Score=152.61 Aligned_cols=164 Identities=13% Similarity=0.157 Sum_probs=110.0
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc---C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC---P 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~---p 242 (520)
.++|||..++..+. .+ +.+|+..+||+|||+.++..+...........++|||||. .+..||.+++.++. +
T Consensus 36 ~~~~~Q~~~i~~~~----~~-~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 110 (220)
T 1t6n_A 36 HPSEVQHECIPQAI----LG-MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 110 (220)
T ss_dssp CCCHHHHHHHHHHH----TT-CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTST
T ss_pred CCCHHHHHHHHHHh----CC-CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 58999999999887 34 3579999999999988776665443222234589999997 67788999999986 4
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWK 322 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~ 322 (520)
+.++..++|........ ..+.. ...+|+|+|++.+...... ..+....+++||+||||++..... ...
T Consensus 111 ~~~v~~~~g~~~~~~~~--~~~~~----~~~~i~v~T~~~l~~~~~~-----~~~~~~~~~~lViDEah~~~~~~~-~~~ 178 (220)
T 1t6n_A 111 NVKVAVFFGGLSIKKDE--EVLKK----NCPHIVVGTPGRILALARN-----KSLNLKHIKHFILDECDKMLEQLD-MRR 178 (220)
T ss_dssp TCCEEEESCCSCHHHHH--HHHHH----SCCSEEEECHHHHHHHHHT-----TSSCCTTCCEEEEESHHHHHSSHH-HHH
T ss_pred CceEEEEeCCCChHHHH--HHHhc----CCCCEEEeCHHHHHHHHHh-----CCCCcccCCEEEEcCHHHHhcccC-cHH
Confidence 67888888765432221 11111 1359999999998764321 112234689999999999854211 222
Q ss_pred HHHHH---hhhcCcEEEEeccCCCCCHHH
Q 039292 323 NLMSV---ARNANQRLMLTGTPLQNDLHE 348 (520)
Q Consensus 323 ~l~~l---~~~~~~rl~LTgTPi~n~~~e 348 (520)
.+..+ .....+.+++||||-.+ +.+
T Consensus 179 ~~~~i~~~~~~~~~~i~~SAT~~~~-~~~ 206 (220)
T 1t6n_A 179 DVQEIFRMTPHEKQVMMFSATLSKE-IRP 206 (220)
T ss_dssp HHHHHHHTSCSSSEEEEEESCCCTT-THH
T ss_pred HHHHHHHhCCCcCeEEEEEeecCHH-HHH
Confidence 22222 22356789999999543 444
No 18
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=183.24 Aligned_cols=180 Identities=19% Similarity=0.267 Sum_probs=119.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh---CCCCCCEEEEeCCc-chhhH-HHHHHHh
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL---NNDPGPHLIVCPAS-VLENW-ERELKKW 240 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~---~~~~~~~LIV~P~s-ll~~W-~~E~~~~ 240 (520)
..|+|||.+++.+++. + +++|++++||+|||++++..+..+... .+..+++|||||.. |+.|| .++|.+|
T Consensus 6 ~~l~~~Q~~~i~~il~----g-~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----G-KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp -CCCHHHHHHHHHHHS----S-CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCccHHHHHHHHHHHh----C-CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 3799999999999983 4 467999999999999988777554321 23347899999975 78999 9999999
Q ss_pred cCC-CeEEEecCCCchhhh-HHHHHHhhcCCCCCccEEEeehhhHhhhhccccc-hHHHHhhcCccEEEEeCccccCCcc
Q 039292 241 CPS-FSVLQYHGAGRTAYS-RELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKD-DRKILKRWRWSCVLMDEAHALKDKN 317 (520)
Q Consensus 241 ~p~-~~v~~~~g~~~~~~~-~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~-~~~~l~~~~~~~vIiDEaH~ikn~~ 317 (520)
++. +.+..++|....... ..+. ...+|+|+||+.+......... ....+....|++|||||||++.+..
T Consensus 81 ~~~~~~v~~~~g~~~~~~~~~~~~--------~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~ 152 (699)
T 4gl2_A 81 LKKWYRVIGLSGDTQLKISFPEVV--------KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEA 152 (699)
T ss_dssp HTTTSCEEEEC----CCCCHHHHH--------HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTB
T ss_pred cCcCceEEEEeCCcchhhHHHhhh--------cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccc
Confidence 987 888888887543321 1111 1469999999999864421110 1122344579999999999985432
Q ss_pred h---HHHHHHHH-H--hh---------hcCcEEEEeccCCCCC-------HHHHHHHHHHhCC
Q 039292 318 S---YRWKNLMS-V--AR---------NANQRLMLTGTPLQND-------LHELWSLLEFMMP 358 (520)
Q Consensus 318 s---~~~~~l~~-l--~~---------~~~~rl~LTgTPi~n~-------~~el~~ll~fl~p 358 (520)
. .....+.. + .. ...++++|||||..++ ..++..++..+.+
T Consensus 153 ~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~ 215 (699)
T 4gl2_A 153 VYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDA 215 (699)
T ss_dssp SSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCC
Confidence 1 11111111 1 00 3367899999999863 3455566666766
No 19
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.68 E-value=3.5e-16 Score=149.83 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=106.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc---C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC---P 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~---p 242 (520)
.++|||..++..+. .+ ..+|+..+||+|||+.++..+...........++|||||. .+..||.+++.++. +
T Consensus 46 ~~~~~Q~~~i~~~~----~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 120 (230)
T 2oxc_A 46 RPSPVQLKAIPLGR----CG-LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKME 120 (230)
T ss_dssp SCCHHHHHHHHHHH----TT-CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCHHHHHHHHHHh----CC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 58999999999876 34 4579999999999988544332222223445789999997 67889999999986 3
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--hHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN--SYR 320 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~--s~~ 320 (520)
++++..+.|.......... + ...+|+|+|++.+...... ..+....+++||+||||++.+.. ...
T Consensus 121 ~~~~~~~~g~~~~~~~~~~--~------~~~~Iiv~Tp~~l~~~~~~-----~~~~~~~~~~lViDEah~~~~~~~~~~~ 187 (230)
T 2oxc_A 121 GLECHVFIGGTPLSQDKTR--L------KKCHIAVGSPGRIKQLIEL-----DYLNPGSIRLFILDEADKLLEEGSFQEQ 187 (230)
T ss_dssp TCCEEEECTTSCHHHHHHH--T------TSCSEEEECHHHHHHHHHT-----TSSCGGGCCEEEESSHHHHHSTTSSHHH
T ss_pred CceEEEEeCCCCHHHHHHh--c------cCCCEEEECHHHHHHHHhc-----CCcccccCCEEEeCCchHhhcCcchHHH
Confidence 6778888776543322111 1 1469999999999764321 11223468899999999985432 222
Q ss_pred HHHHHHHhhhcCcEEEEeccCC
Q 039292 321 WKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi 342 (520)
...+........+.+++|||+-
T Consensus 188 ~~~i~~~~~~~~~~l~lSAT~~ 209 (230)
T 2oxc_A 188 INWIYSSLPASKQMLAVSATYP 209 (230)
T ss_dssp HHHHHHHSCSSCEEEEEESCCC
T ss_pred HHHHHHhCCCCCeEEEEEeccC
Confidence 2223222223567899999963
No 20
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.68 E-value=3.1e-16 Score=161.44 Aligned_cols=162 Identities=14% Similarity=0.158 Sum_probs=111.2
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc---C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC---P 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~---p 242 (520)
.|+|||..++.++. .+ +.+|++++||+|||++++..+...........++|||||. .+..||.+++.++. |
T Consensus 30 ~~~~~Q~~~i~~~~----~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 104 (391)
T 1xti_A 30 HPSEVQHECIPQAI----LG-MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 104 (391)
T ss_dssp SCCHHHHHHHHHHT----TT-CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCT
T ss_pred CCCHHHHHHHHHHh----cC-CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCC
Confidence 69999999999887 34 4579999999999998766665443323345689999997 67889999999886 4
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchH--H
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSY--R 320 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~--~ 320 (520)
++++..+.|......... .+.. ...+|+|+||+.+...... ..+....+++||+||||++.+.... .
T Consensus 105 ~~~~~~~~g~~~~~~~~~--~~~~----~~~~iiv~T~~~l~~~~~~-----~~~~~~~~~~vViDEaH~~~~~~~~~~~ 173 (391)
T 1xti_A 105 NVKVAVFFGGLSIKKDEE--VLKK----NCPHIVVGTPGRILALARN-----KSLNLKHIKHFILDECDKMLEQLDMRRD 173 (391)
T ss_dssp TCCEEEECTTSCHHHHHH--HHHH----SCCSEEEECHHHHHHHHHT-----TSSCCTTCSEEEECSHHHHTSSHHHHHH
T ss_pred CeEEEEEeCCCCHHHHHH--HHhc----CCCCEEEECHHHHHHHHHc-----CCccccccCEEEEeCHHHHhhccchHHH
Confidence 778888887654332221 1111 1359999999999764321 1123447899999999999763221 1
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCC
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQN 344 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n 344 (520)
...+........+.+++||||-.+
T Consensus 174 ~~~~~~~~~~~~~~i~~SAT~~~~ 197 (391)
T 1xti_A 174 VQEIFRMTPHEKQVMMFSATLSKE 197 (391)
T ss_dssp HHHHHHTSCSSSEEEEEESSCCST
T ss_pred HHHHHhhCCCCceEEEEEeeCCHH
Confidence 222222222356689999999654
No 21
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.67 E-value=7.6e-16 Score=145.16 Aligned_cols=139 Identities=18% Similarity=0.313 Sum_probs=89.8
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh---CCCCCCEEEEeCC-cchhh-HHHHHHH
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL---NNDPGPHLIVCPA-SVLEN-WERELKK 239 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~---~~~~~~~LIV~P~-sll~~-W~~E~~~ 239 (520)
...|+|||..++.+++ .+ +.+|+..+||+|||++++..+..+... ....+++|||||. .++.| |.+++.+
T Consensus 31 ~~~l~~~Q~~~i~~~~----~~-~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~ 105 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPAL----EG-KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQP 105 (216)
T ss_dssp CCCCCHHHHHHHHHHH----TT-CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHH
T ss_pred CCCchHHHHHHHHHHh----cC-CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHH
Confidence 3489999999999887 33 457999999999999988777644321 2346789999998 55688 9999999
Q ss_pred hcC-CCeEEEecCCCchhhh-HHHHHHhhcCCCCCccEEEeehhhHhhhhccccchH-HHHhhcCccEEEEeCccccCCc
Q 039292 240 WCP-SFSVLQYHGAGRTAYS-RELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDR-KILKRWRWSCVLMDEAHALKDK 316 (520)
Q Consensus 240 ~~p-~~~v~~~~g~~~~~~~-~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~-~~l~~~~~~~vIiDEaH~ikn~ 316 (520)
|.+ ...+..+.|....... ..+.. ..+|+|+||+.+........... ..+....|++||+||||++...
T Consensus 106 ~~~~~~~v~~~~g~~~~~~~~~~~~~--------~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 106 FLKKWYRVIGLSGDTQLKISFPEVVK--------SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp HHTTTSCEEECCC---CCCCHHHHHH--------HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred HhccCceEEEEeCCcccchhHHhhcc--------CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 875 4677777776433211 11111 25999999999976432211000 0123356899999999999643
No 22
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.66 E-value=4.3e-16 Score=148.19 Aligned_cols=157 Identities=11% Similarity=0.087 Sum_probs=101.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHH-HHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC--
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAI-TYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP-- 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~ai-a~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p-- 242 (520)
.++|||..++..+. .+ +.+|+..+||+|||++++ .++..+ .......++|||||. .+..||.+++.+++.
T Consensus 36 ~~~~~Q~~~i~~~~----~~-~~~lv~~pTGsGKT~~~~~~~l~~l-~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 109 (224)
T 1qde_A 36 EPSAIQQRAIMPII----EG-HDVLAQAQSGTGKTGTFSIAALQRI-DTSVKAPQALMLAPTRELALQIQKVVMALAFHM 109 (224)
T ss_dssp SCCHHHHHHHHHHH----TT-CCEEEECCTTSSHHHHHHHHHHHHC-CTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCcHHHHHHHHHHh----cC-CCEEEECCCCCcHHHHHHHHHHHHH-hccCCCceEEEEECCHHHHHHHHHHHHHHhccc
Confidence 68999999999887 34 457999999999998844 333333 223455689999997 667889999999875
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch-HHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS-YRW 321 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s-~~~ 321 (520)
+..+..+.|......... .....+|+|+|++.+...... ..+....+++||+||||++.+..- ...
T Consensus 110 ~~~~~~~~g~~~~~~~~~--------~~~~~~iiv~Tp~~l~~~~~~-----~~~~~~~~~~iViDEah~~~~~~~~~~l 176 (224)
T 1qde_A 110 DIKVHACIGGTSFVEDAE--------GLRDAQIVVGTPGRVFDNIQR-----RRFRTDKIKMFILDEADEMLSSGFKEQI 176 (224)
T ss_dssp CCCEEEECC------------------CTTCSEEEECHHHHHHHHHT-----TSSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred CceEEEEeCCcchHHHHh--------cCCCCCEEEECHHHHHHHHHh-----CCcchhhCcEEEEcChhHHhhhhhHHHH
Confidence 456666666543221111 011369999999998764321 112234689999999999854221 112
Q ss_pred HHHHHHhhhcCcEEEEeccCC
Q 039292 322 KNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi 342 (520)
..+........+.++||||+-
T Consensus 177 ~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 177 YQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp HHHHHHSCTTCEEEEEESSCC
T ss_pred HHHHHhCCccCeEEEEEeecC
Confidence 222222224566899999985
No 23
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.66 E-value=7.5e-16 Score=144.48 Aligned_cols=159 Identities=14% Similarity=0.117 Sum_probs=106.3
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC---
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP--- 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--- 242 (520)
.++|||..++..+. .+ +.+|+..+||+|||+.++..+...........++|||||. .+..||.+.+.++..
T Consensus 25 ~~~~~Q~~~i~~~~----~~-~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 99 (206)
T 1vec_A 25 KPSPIQEESIPIAL----SG-RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMG 99 (206)
T ss_dssp SCCHHHHHHHHHHH----TT-CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHc----cC-CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 69999999999887 34 4689999999999987665444332223345579999997 567889999988864
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch-HHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS-YRW 321 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s-~~~ 321 (520)
+..+..+.|........ ... ....+|+|+|++.+...... ..+....+++||+||||++....- ...
T Consensus 100 ~~~~~~~~g~~~~~~~~--~~~-----~~~~~i~v~T~~~l~~~~~~-----~~~~~~~~~~lViDEah~~~~~~~~~~l 167 (206)
T 1vec_A 100 GAKVMATTGGTNLRDDI--MRL-----DDTVHVVIATPGRILDLIKK-----GVAKVDHVQMIVLDEADKLLSQDFVQIM 167 (206)
T ss_dssp SCCEEEECSSSCHHHHH--HHT-----TSCCSEEEECHHHHHHHHHT-----TCSCCTTCCEEEEETHHHHTSTTTHHHH
T ss_pred CceEEEEeCCccHHHHH--Hhc-----CCCCCEEEeCHHHHHHHHHc-----CCcCcccCCEEEEEChHHhHhhCcHHHH
Confidence 56777777765432211 111 12579999999998664321 112234688999999999865321 222
Q ss_pred HHHHHHhhhcCcEEEEeccCC
Q 039292 322 KNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi 342 (520)
..+.....+..+.+++|||+-
T Consensus 168 ~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 168 EDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp HHHHHHSCTTCEEEEEESCCC
T ss_pred HHHHHhCCccceEEEEEeeCC
Confidence 222222223567899999984
No 24
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=149.10 Aligned_cols=160 Identities=19% Similarity=0.212 Sum_probs=105.7
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHH-HHHHh---CCCCCCEEEEeCC-cchhhHHHHHHHh
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLM-LLKHL---NNDPGPHLIVCPA-SVLENWERELKKW 240 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~-~l~~~---~~~~~~~LIV~P~-sll~~W~~E~~~~ 240 (520)
..++|||..++.++. .+ +.+|+..+||+|||++++..+. .+... .....++|||||. .+..||.+++.++
T Consensus 46 ~~~~~~Q~~~i~~~~----~~-~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 120 (236)
T 2pl3_A 46 RLVTEIQKQTIGLAL----QG-KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKV 120 (236)
T ss_dssp CBCCHHHHHHHHHHH----TT-CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CC-CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 368999999999887 34 4679999999999998655443 33221 1235679999997 6788899999999
Q ss_pred cCC--CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-
Q 039292 241 CPS--FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN- 317 (520)
Q Consensus 241 ~p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~- 317 (520)
+.. +.+..++|......... .+ ...+|+|+|++.+....... ..+....+++||+||||++.+..
T Consensus 121 ~~~~~~~~~~~~g~~~~~~~~~--~~------~~~~iiv~Tp~~l~~~l~~~----~~~~~~~~~~lViDEah~~~~~~~ 188 (236)
T 2pl3_A 121 GKNHDFSAGLIIGGKDLKHEAE--RI------NNINILVCTPGRLLQHMDET----VSFHATDLQMLVLDEADRILDMGF 188 (236)
T ss_dssp TTTSSCCEEEECCC--CHHHHH--HH------TTCSEEEECHHHHHHHHHHC----SSCCCTTCCEEEETTHHHHHHTTT
T ss_pred hCCCCeeEEEEECCCCHHHHHH--hC------CCCCEEEECHHHHHHHHHhc----CCcccccccEEEEeChHHHhcCCc
Confidence 754 66777777643322211 11 14699999999997643110 01233468899999999986432
Q ss_pred hHHHHHHHHHhhhcCcEEEEeccCC
Q 039292 318 SYRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 318 s~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
......+........+++++|||+-
T Consensus 189 ~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 189 ADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp HHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred HHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 1222223222223556899999984
No 25
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.65 E-value=5.9e-16 Score=157.60 Aligned_cols=160 Identities=14% Similarity=0.130 Sum_probs=109.0
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC--C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP--S 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--~ 243 (520)
.|+|||..++.+++. +.+.+|++.+||+|||++++..+..+.. .....++|||||. .+..||.+++.++++ .
T Consensus 28 ~~~~~Q~~~i~~~~~----~~~~~l~~~~TGsGKT~~~~~~~~~~~~-~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 102 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN----DEYNIVAQARTGSGKTASFAIPLIELVN-ENNGIEAIILTPTRELAIQVADEIESLKGNKN 102 (367)
T ss_dssp SCCHHHHHHHHHHHH----TCSEEEEECCSSSSHHHHHHHHHHHHSC-SSSSCCEEEECSCHHHHHHHHHHHHHHHCSSC
T ss_pred CCCHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHHHhc-ccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCC
Confidence 699999999999873 3246799999999999988776654432 2356689999997 567899999999975 3
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch-HHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS-YRWK 322 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s-~~~~ 322 (520)
..+..+.|........ ..+. ..+|+|+||+.+...... ..+....|++||+||||++.+... ....
T Consensus 103 ~~v~~~~~~~~~~~~~--~~~~------~~~iiv~T~~~l~~~~~~-----~~~~~~~~~~iIiDEah~~~~~~~~~~~~ 169 (367)
T 1hv8_A 103 LKIAKIYGGKAIYPQI--KALK------NANIVVGTPGRILDHINR-----GTLNLKNVKYFILDEADEMLNMGFIKDVE 169 (367)
T ss_dssp CCEEEECTTSCHHHHH--HHHH------TCSEEEECHHHHHHHHHT-----TCSCTTSCCEEEEETHHHHHTTTTHHHHH
T ss_pred ceEEEEECCcchHHHH--hhcC------CCCEEEecHHHHHHHHHc-----CCcccccCCEEEEeCchHhhhhchHHHHH
Confidence 5566666654332211 1111 369999999998764321 112234689999999999865432 1222
Q ss_pred HHHHHhhhcCcEEEEeccCCCC
Q 039292 323 NLMSVARNANQRLMLTGTPLQN 344 (520)
Q Consensus 323 ~l~~l~~~~~~rl~LTgTPi~n 344 (520)
.+........+.+++||||..+
T Consensus 170 ~~~~~~~~~~~~i~~SAT~~~~ 191 (367)
T 1hv8_A 170 KILNACNKDKRILLFSATMPRE 191 (367)
T ss_dssp HHHHTSCSSCEEEEECSSCCHH
T ss_pred HHHHhCCCCceEEEEeeccCHH
Confidence 2222222456789999999653
No 26
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.65 E-value=7.9e-16 Score=146.08 Aligned_cols=164 Identities=14% Similarity=0.047 Sum_probs=107.0
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC---
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP--- 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--- 242 (520)
.++|||..++..+.. + +.+|+..+||+|||+.++..+............+|||||. .+..||.+++.++..
T Consensus 26 ~~~~~Q~~~i~~~~~----~-~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 100 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----G-ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 100 (219)
T ss_dssp SCCHHHHHHHHHHHH----T-CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHhC----C-CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcc
Confidence 689999999998873 3 3579999999999998655444332223345689999997 667889999998864
Q ss_pred ---CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--
Q 039292 243 ---SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-- 317 (520)
Q Consensus 243 ---~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-- 317 (520)
...+..+.|....... ........+|+|+|++.+...... ..+....+++||+||||++.+..
T Consensus 101 ~~~~~~~~~~~g~~~~~~~-------~~~~~~~~~Iiv~Tp~~l~~~l~~-----~~~~~~~~~~lViDEah~~~~~~~~ 168 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKA-------LEKLNVQPHIVIGTPGRINDFIRE-----QALDVHTAHILVVDEADLMLDMGFI 168 (219)
T ss_dssp GGGCCCEEEECCCSHHHHT-------TCCCSSCCSEEEECHHHHHHHHHT-----TCCCGGGCCEEEECSHHHHHHTTCH
T ss_pred cccceEEEEEeCCCCHHHH-------HHHcCCCCCEEEeCHHHHHHHHHc-----CCCCcCcceEEEEcCchHHhhhChH
Confidence 4566666665432211 011123578999999998764321 11223468899999999985422
Q ss_pred hHHHHHHHHHhhhcCcEEEEeccCCCCCHHHH
Q 039292 318 SYRWKNLMSVARNANQRLMLTGTPLQNDLHEL 349 (520)
Q Consensus 318 s~~~~~l~~l~~~~~~rl~LTgTPi~n~~~el 349 (520)
......+..+ ....+.+++|||+ .+.+.++
T Consensus 169 ~~l~~i~~~~-~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 169 TDVDQIAARM-PKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp HHHHHHHHTS-CTTCEEEEEESCC-CGGGHHH
T ss_pred HHHHHHHHhC-CcccEEEEEecCC-CHHHHHH
Confidence 1222222222 1345689999997 4444443
No 27
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.64 E-value=2.3e-15 Score=145.99 Aligned_cols=160 Identities=14% Similarity=0.105 Sum_probs=106.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC--C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP--S 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--~ 243 (520)
.++|||..++..+. .+ +.+|+..+||+|||++++..+............+|||||. .+..||.+++.+++. +
T Consensus 65 ~~~~~Q~~~i~~i~----~~-~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~ 139 (249)
T 3ber_A 65 KPTKIQIEAIPLAL----QG-RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIG 139 (249)
T ss_dssp SCCHHHHHHHHHHH----TT-CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGT
T ss_pred CCCHHHHHHHHHHh----CC-CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 68999999999887 34 4679999999999998665554333334445679999997 567889999999865 4
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch-HHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS-YRWK 322 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s-~~~~ 322 (520)
+.+..+.|......... ... ...+|+|+|++.+....... ..+....+++||+||||++.+..- ....
T Consensus 140 ~~~~~~~g~~~~~~~~~--~~~-----~~~~I~v~Tp~~l~~~l~~~----~~~~l~~~~~lViDEah~l~~~~~~~~l~ 208 (249)
T 3ber_A 140 VQSAVIVGGIDSMSQSL--ALA-----KKPHIIIATPGRLIDHLENT----KGFNLRALKYLVMDEADRILNMDFETEVD 208 (249)
T ss_dssp CCEEEECTTSCHHHHHH--HHH-----TCCSEEEECHHHHHHHHHHS----TTCCCTTCCEEEECSHHHHHHTTCHHHHH
T ss_pred eeEEEEECCCChHHHHH--Hhc-----CCCCEEEECHHHHHHHHHcC----CCcCccccCEEEEcChhhhhccChHHHHH
Confidence 66666666543322111 111 14699999999997643210 112234588999999998864321 1122
Q ss_pred HHHHHhhhcCcEEEEeccCC
Q 039292 323 NLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 323 ~l~~l~~~~~~rl~LTgTPi 342 (520)
.+........+.+++|||+-
T Consensus 209 ~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 209 KILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp HHHHSSCSSSEEEEEESSCC
T ss_pred HHHHhCCCCCeEEEEeccCC
Confidence 22222223567899999985
No 28
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.63 E-value=1.1e-15 Score=157.32 Aligned_cols=160 Identities=11% Similarity=0.078 Sum_probs=108.4
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC--
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP-- 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p-- 242 (520)
..|+|||..++.+++. + +.+++..+||+|||++++..+...........++|||||. .+..||.+++.++++
T Consensus 42 ~~~~~~Q~~~i~~i~~----~-~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 116 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIE----G-HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM 116 (394)
T ss_dssp CSCCHHHHHHHHHHHH----T-CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHhC----C-CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 3799999999999874 3 3579999999999988655444332223456789999997 677889999999875
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-hHHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-SYRW 321 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-s~~~ 321 (520)
+..+..+.|.......... +. ..+|+|+|++.+...... ..+....+++||+||||++.+.. ....
T Consensus 117 ~~~~~~~~g~~~~~~~~~~--~~------~~~i~v~T~~~l~~~~~~-----~~~~~~~~~~vIiDEah~~~~~~~~~~~ 183 (394)
T 1fuu_A 117 DIKVHACIGGTSFVEDAEG--LR------DAQIVVGTPGRVFDNIQR-----RRFRTDKIKMFILDEADEMLSSGFKEQI 183 (394)
T ss_dssp CCCEEEECSSCCHHHHHHH--HH------HCSEEEECHHHHHHHHHT-----TSSCCTTCCEEEEETHHHHHHTTCHHHH
T ss_pred CeeEEEEeCCCchHHHHhh--cC------CCCEEEECHHHHHHHHHh-----CCcchhhCcEEEEEChHHhhCCCcHHHH
Confidence 4667777766543222111 11 258999999998764321 12234468999999999984322 1222
Q ss_pred HHHHHHhhhcCcEEEEeccCCC
Q 039292 322 KNLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi~ 343 (520)
..+........+.+++||||-.
T Consensus 184 ~~~~~~~~~~~~~i~~SAT~~~ 205 (394)
T 1fuu_A 184 YQIFTLLPPTTQVVLLSATMPN 205 (394)
T ss_dssp HHHHHHSCTTCEEEEECSSCCH
T ss_pred HHHHHhCCCCceEEEEEEecCH
Confidence 2333332245678999999963
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.63 E-value=2.5e-15 Score=151.18 Aligned_cols=153 Identities=13% Similarity=0.142 Sum_probs=104.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC--C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP--S 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--~ 243 (520)
.|+|||.+++.++. .+ +.+++..+||+|||++++..+... ..++|||||. .++.||.+++.++.+ +
T Consensus 16 ~l~~~Q~~~i~~i~----~~-~~~lv~~~TGsGKT~~~~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 84 (337)
T 2z0m_A 16 NFTEVQSKTIPLML----QG-KNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYMD 84 (337)
T ss_dssp SCCHHHHHHHHHHH----TT-CCEEEECCTTSSHHHHHHHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHh----cC-CCEEEEcCCCCcHHHHHHHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhcC
Confidence 69999999999987 34 457999999999999876655432 5689999997 677999999999875 4
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch-HHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS-YRWK 322 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s-~~~~ 322 (520)
..+..++|........ ..+. ..+|+|+|++.+...... ..+....|++||+||||++.+... ....
T Consensus 85 ~~~~~~~~~~~~~~~~--~~~~------~~~i~v~T~~~l~~~~~~-----~~~~~~~~~~iViDEah~~~~~~~~~~~~ 151 (337)
T 2z0m_A 85 TKVAEVYGGMPYKAQI--NRVR------NADIVVATPGRLLDLWSK-----GVIDLSSFEIVIIDEADLMFEMGFIDDIK 151 (337)
T ss_dssp CCEEEECTTSCHHHHH--HHHT------TCSEEEECHHHHHHHHHT-----TSCCGGGCSEEEEESHHHHHHTTCHHHHH
T ss_pred CcEEEEECCcchHHHH--hhcC------CCCEEEECHHHHHHHHHc-----CCcchhhCcEEEEEChHHhhccccHHHHH
Confidence 5666666654332211 1111 369999999999764321 122345689999999999864321 1222
Q ss_pred HHHHHhhhcCcEEEEeccCCC
Q 039292 323 NLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 323 ~l~~l~~~~~~rl~LTgTPi~ 343 (520)
.+..........+++||||-.
T Consensus 152 ~~~~~~~~~~~~~~~SAT~~~ 172 (337)
T 2z0m_A 152 IILAQTSNRKITGLFSATIPE 172 (337)
T ss_dssp HHHHHCTTCSEEEEEESCCCH
T ss_pred HHHhhCCcccEEEEEeCcCCH
Confidence 222222234556678999954
No 30
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.62 E-value=1.6e-15 Score=157.50 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=107.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCC--
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPS-- 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~-- 243 (520)
.++|||..++.+++ .+ +.+|++.+||+|||++++..+...........++|||||.. +..||.+++.+++..
T Consensus 59 ~~~~~Q~~ai~~i~----~~-~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 133 (410)
T 2j0s_A 59 KPSAIQQRAIKQII----KG-RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMN 133 (410)
T ss_dssp SCCHHHHHHHHHHH----TT-CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHh----CC-CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCC
Confidence 68999999999987 34 45799999999999987766544332234567899999974 778899999998754
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch-HHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS-YRWK 322 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s-~~~~ 322 (520)
+.+..+.|....... ...+.. ..+|+|+|++.+...... ..+....+++||+||||++.+... ....
T Consensus 134 ~~~~~~~g~~~~~~~--~~~~~~-----~~~ivv~Tp~~l~~~l~~-----~~~~~~~~~~vViDEah~~~~~~~~~~~~ 201 (410)
T 2j0s_A 134 VQCHACIGGTNVGED--IRKLDY-----GQHVVAGTPGRVFDMIRR-----RSLRTRAIKMLVLDEADEMLNKGFKEQIY 201 (410)
T ss_dssp CCEEEECTTSCHHHH--HHHHHH-----CCSEEEECHHHHHHHHHT-----TSSCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred eEEEEEECCCCHHHH--HHHhhc-----CCCEEEcCHHHHHHHHHh-----CCccHhheeEEEEccHHHHHhhhhHHHHH
Confidence 455555555432221 111111 358999999998764321 123344689999999999876442 1222
Q ss_pred HHHHHhhhcCcEEEEeccCCC
Q 039292 323 NLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 323 ~l~~l~~~~~~rl~LTgTPi~ 343 (520)
.+........+.+++||||-.
T Consensus 202 ~i~~~~~~~~~~i~~SAT~~~ 222 (410)
T 2j0s_A 202 DVYRYLPPATQVVLISATLPH 222 (410)
T ss_dssp HHHTTSCTTCEEEEEESCCCH
T ss_pred HHHHhCccCceEEEEEcCCCH
Confidence 222222245678999999953
No 31
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.62 E-value=3.4e-15 Score=170.40 Aligned_cols=162 Identities=17% Similarity=0.201 Sum_probs=108.3
Q ss_pred cCCcHHHHHHHHHHHHHHhcC---------CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC-CcchhhHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKG---------IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP-ASVLENWER 235 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~---------~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P-~sll~~W~~ 235 (520)
..+||||..||.+++.....+ .+++|+.+.||+|||++++.++..+. ......++||||| ..|..||.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~-~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLAT-ELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHT-TCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHH-hcCCCceEEEEeCcHHHHHHHHH
Confidence 469999999999998754321 24579999999999999877664442 2334468999999 577899999
Q ss_pred HHHHhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC
Q 039292 236 ELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD 315 (520)
Q Consensus 236 E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn 315 (520)
+|..|.+.. +..+.........+. . ...+|+|+|++.|........ . ......+.+||+||||+...
T Consensus 349 ~f~~f~~~~---v~~~~s~~~l~~~L~---~----~~~~IiVtTiqkl~~~l~~~~-~--~~~~~~~~lvIiDEAHrs~~ 415 (1038)
T 2w00_A 349 EYQRFSPDS---VNGSENTAGLKRNLD---K----DDNKIIVTTIQKLNNLMKAES-D--LPVYNQQVVFIFDECHRSQF 415 (1038)
T ss_dssp HHHTTSTTC---SSSSCCCHHHHHHHH---C----SSCCEEEEEHHHHHHHHHHCC-C--CGGGGSCEEEEEESCCTTHH
T ss_pred HHHHhcccc---cccccCHHHHHHHhc---C----CCCCEEEEEHHHHHHHHhccc-c--hhccccccEEEEEccchhcc
Confidence 999998652 222322222222221 1 246999999999976432110 0 00122688999999999743
Q ss_pred cchHHHHHHHHHhhhcCcEEEEeccCCCC
Q 039292 316 KNSYRWKNLMSVARNANQRLMLTGTPLQN 344 (520)
Q Consensus 316 ~~s~~~~~l~~l~~~~~~rl~LTgTPi~n 344 (520)
...++.+.... ...++++|||||+..
T Consensus 416 --~~~~~~I~~~~-p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 416 --GEAQKNLKKKF-KRYYQFGFTGTPIFP 441 (1038)
T ss_dssp --HHHHHHHHHHC-SSEEEEEEESSCCCS
T ss_pred --hHHHHHHHHhC-CcccEEEEeCCcccc
Confidence 23344554432 456899999999964
No 32
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.61 E-value=2.6e-15 Score=155.26 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=107.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC--C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP--S 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--~ 243 (520)
.|+|||..++.++.. + +.+|+..+||+|||++++..+...........++|||||. .+..||.+++.++++ +
T Consensus 43 ~~~~~Q~~~i~~i~~----~-~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 117 (400)
T 1s2m_A 43 KPSPIQEEAIPVAIT----G-RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCG 117 (400)
T ss_dssp SCCHHHHHHHHHHHH----T-CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHhc----C-CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccC
Confidence 699999999999873 3 3579999999999998766655443323345689999997 567889999999986 4
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKN 323 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~ 323 (520)
..+..+.|....... ... .....+|+|+|++.+...... .......+++||+||||++.+.. ....
T Consensus 118 ~~~~~~~g~~~~~~~--~~~-----~~~~~~Ivv~T~~~l~~~~~~-----~~~~~~~~~~vIiDEaH~~~~~~--~~~~ 183 (400)
T 1s2m_A 118 ISCMVTTGGTNLRDD--ILR-----LNETVHILVGTPGRVLDLASR-----KVADLSDCSLFIMDEADKMLSRD--FKTI 183 (400)
T ss_dssp CCEEEECSSSCHHHH--HHH-----TTSCCSEEEECHHHHHHHHHT-----TCSCCTTCCEEEEESHHHHSSHH--HHHH
T ss_pred ceEEEEeCCcchHHH--HHH-----hcCCCCEEEEchHHHHHHHHh-----CCcccccCCEEEEeCchHhhhhc--hHHH
Confidence 566666665543221 111 123579999999998663311 11223468999999999986543 2233
Q ss_pred HHHHh---hhcCcEEEEeccCC
Q 039292 324 LMSVA---RNANQRLMLTGTPL 342 (520)
Q Consensus 324 l~~l~---~~~~~rl~LTgTPi 342 (520)
+..+. ....+.++||||+-
T Consensus 184 ~~~i~~~~~~~~~~i~lSAT~~ 205 (400)
T 1s2m_A 184 IEQILSFLPPTHQSLLFSATFP 205 (400)
T ss_dssp HHHHHTTSCSSCEEEEEESCCC
T ss_pred HHHHHHhCCcCceEEEEEecCC
Confidence 33332 23567899999985
No 33
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.60 E-value=2.3e-15 Score=144.86 Aligned_cols=159 Identities=13% Similarity=0.110 Sum_probs=101.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC--C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP--S 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--~ 243 (520)
.++|||..++..++ .+ +.+|+..+||+|||+.++..+...........++|||||. .+..||.+++.+++. +
T Consensus 52 ~~~~~Q~~ai~~i~----~~-~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (237)
T 3bor_A 52 KPSAIQQRAIIPCI----KG-YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMG 126 (237)
T ss_dssp SCCHHHHHHHHHHH----TT-CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTT
T ss_pred CCCHHHHHHHHHHh----CC-CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcC
Confidence 68999999999887 34 3579999999999988655444332222345689999997 577889999999875 3
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC--cchHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD--KNSYRW 321 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn--~~s~~~ 321 (520)
..+..+.|...... ....+. ....+|+|+|++.+...... ..+....+++||+||||++.. ......
T Consensus 127 ~~~~~~~g~~~~~~--~~~~l~----~~~~~Ilv~Tp~~l~~~l~~-----~~~~~~~~~~lViDEah~~~~~~~~~~l~ 195 (237)
T 3bor_A 127 ATCHACIGGTNVRN--EMQKLQ----AEAPHIVVGTPGRVFDMLNR-----RYLSPKWIKMFVLDEADEMLSRGFKDQIY 195 (237)
T ss_dssp CCEEEECC-------------------CCCSEEEECHHHHHHHHHT-----TSSCSTTCCEEEEESHHHHHHTTCHHHHH
T ss_pred ceEEEEECCCchHH--HHHHHh----cCCCCEEEECHHHHHHHHHh-----CCcCcccCcEEEECCchHhhccCcHHHHH
Confidence 45555555432211 111111 12369999999998764321 112234589999999998743 223333
Q ss_pred HHHHHHhhhcCcEEEEeccCC
Q 039292 322 KNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi 342 (520)
..+..+ ....+.+++|||+-
T Consensus 196 ~i~~~~-~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 196 EIFQKL-NTSIQVVLLSATMP 215 (237)
T ss_dssp HHHHHS-CTTCEEEEECSSCC
T ss_pred HHHHhC-CCCCeEEEEEEecC
Confidence 333333 24567899999984
No 34
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.59 E-value=7.7e-15 Score=142.38 Aligned_cols=160 Identities=15% Similarity=0.098 Sum_probs=102.9
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC---------CCCCCEEEEeCC-cchhhHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN---------NDPGPHLIVCPA-SVLENWER 235 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~---------~~~~~~LIV~P~-sll~~W~~ 235 (520)
..++|||..++..++ .+ +.+|+..+||+|||+.++..+....... ....++|||||. .+..||.+
T Consensus 44 ~~~~~~Q~~~i~~i~----~~-~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 118 (253)
T 1wrb_A 44 QRPTPIQKNAIPAIL----EH-RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILS 118 (253)
T ss_dssp CSCCHHHHHHHHHHH----TT-CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CC-CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHH
Confidence 469999999999887 34 4579999999999987655443332211 123579999997 67789999
Q ss_pred HHHHhcCC--CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCcccc
Q 039292 236 ELKKWCPS--FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHAL 313 (520)
Q Consensus 236 E~~~~~p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~i 313 (520)
++.++... ..+..+.|........ ..+ ..+.+|+|+|++.+....... .+....+++||+||||++
T Consensus 119 ~~~~~~~~~~~~~~~~~g~~~~~~~~--~~~-----~~~~~Ivv~Tp~~l~~~l~~~-----~~~~~~~~~lViDEah~~ 186 (253)
T 1wrb_A 119 ESQKFSLNTPLRSCVVYGGADTHSQI--REV-----QMGCHLLVATPGRLVDFIEKN-----KISLEFCKYIVLDEADRM 186 (253)
T ss_dssp HHHHHHTTSSCCEEEECSSSCSHHHH--HHH-----SSCCSEEEECHHHHHHHHHTT-----SBCCTTCCEEEEETHHHH
T ss_pred HHHHHhccCCceEEEEECCCCHHHHH--HHh-----CCCCCEEEECHHHHHHHHHcC-----CCChhhCCEEEEeCHHHH
Confidence 99998753 5556565554322111 111 124699999999997643211 122335789999999998
Q ss_pred CCc--chHHHHHHHHHhhh---cCcEEEEeccCC
Q 039292 314 KDK--NSYRWKNLMSVARN---ANQRLMLTGTPL 342 (520)
Q Consensus 314 kn~--~s~~~~~l~~l~~~---~~~rl~LTgTPi 342 (520)
.+. .......+..+... ..+.+++||||-
T Consensus 187 ~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~ 220 (253)
T 1wrb_A 187 LDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP 220 (253)
T ss_dssp HHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC
T ss_pred HhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC
Confidence 532 22222222211001 456899999974
No 35
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.59 E-value=4.3e-15 Score=152.69 Aligned_cols=158 Identities=11% Similarity=0.043 Sum_probs=106.8
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcC--
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCP-- 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-- 242 (520)
..++|||..++.+++.. +.+.+|+..+||+|||++++..+...........++|||||.. +..||.+++.++..
T Consensus 26 ~~~~~~Q~~~i~~~~~~---~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 102 (395)
T 3pey_A 26 QKPSKIQERALPLLLHN---PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFT 102 (395)
T ss_dssp CSCCHHHHHHHHHHHCS---SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHHcC---CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhccc
Confidence 37999999999998732 1246799999999999988766654433334567899999975 77889999999864
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch--HH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS--YR 320 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s--~~ 320 (520)
...+....|...... .....+|+|+|++.+...... ..+....+++||+||||++.+... ..
T Consensus 103 ~~~~~~~~~~~~~~~-----------~~~~~~iiv~T~~~l~~~~~~-----~~~~~~~~~~iIiDEah~~~~~~~~~~~ 166 (395)
T 3pey_A 103 KITSQLIVPDSFEKN-----------KQINAQVIVGTPGTVLDLMRR-----KLMQLQKIKIFVLDEADNMLDQQGLGDQ 166 (395)
T ss_dssp CCCEEEESTTSSCTT-----------SCBCCSEEEECHHHHHHHHHT-----TCBCCTTCCEEEEETHHHHHHSTTHHHH
T ss_pred CeeEEEEecCchhhh-----------ccCCCCEEEEcHHHHHHHHHc-----CCcccccCCEEEEEChhhhcCccccHHH
Confidence 344555554432211 112469999999998764311 122344689999999999865222 22
Q ss_pred HHHHHHHhhhcCcEEEEeccCC
Q 039292 321 WKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi 342 (520)
...+........+.+++||||-
T Consensus 167 ~~~~~~~~~~~~~~i~~SAT~~ 188 (395)
T 3pey_A 167 CIRVKRFLPKDTQLVLFSATFA 188 (395)
T ss_dssp HHHHHHTSCTTCEEEEEESCCC
T ss_pred HHHHHHhCCCCcEEEEEEecCC
Confidence 2333333224567899999994
No 36
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.59 E-value=3.5e-15 Score=154.71 Aligned_cols=159 Identities=14% Similarity=0.144 Sum_probs=106.0
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC--C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP--S 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p--~ 243 (520)
.++|||..++.+++ .+ +.+|++.+||+|||++++..+...........++|||||. .+..||.+++.+++. .
T Consensus 62 ~~~~~Q~~~i~~~~----~~-~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 136 (414)
T 3eiq_A 62 KPSAIQQRAILPCI----KG-YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136 (414)
T ss_dssp SCCHHHHHHHHHHH----TT-CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSC
T ss_pred CCCHHHHHHhHHHh----CC-CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccC
Confidence 68999999998887 34 3579999999999998766655443333456789999997 467889999999863 3
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--hHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN--SYRW 321 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~--s~~~ 321 (520)
..+..+.|..... ....... ....+|+|+|++.+.... ....+....+++||+||||++.+.. ....
T Consensus 137 ~~~~~~~~~~~~~--~~~~~~~----~~~~~iiv~T~~~l~~~l-----~~~~~~~~~~~~vViDEah~~~~~~~~~~~~ 205 (414)
T 3eiq_A 137 ASCHACIGGTNVR--AEVQKLQ----MEAPHIIVGTPGRVFDML-----NRRYLSPKYIKMFVLDEADEMLSRGFKDQIY 205 (414)
T ss_dssp CCEEECCCCTTHH--HHHHHHT----TTCCSEEEECHHHHHHHH-----HHTSSCSTTCCEEEECSHHHHHHTTTHHHHH
T ss_pred ceEEEEECCcchH--HHHHHHh----cCCCCEEEECHHHHHHHH-----HcCCcccccCcEEEEECHHHhhccCcHHHHH
Confidence 4555544443222 1111111 124699999999987643 1222334458999999999985432 2222
Q ss_pred HHHHHHhhhcCcEEEEeccCC
Q 039292 322 KNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi 342 (520)
..+..+ ....+.++|||||-
T Consensus 206 ~~~~~~-~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 206 DIFQKL-NSNTQVVLLSATMP 225 (414)
T ss_dssp HHHTTS-CTTCEEEEECSCCC
T ss_pred HHHHhC-CCCCeEEEEEEecC
Confidence 222222 24566899999995
No 37
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.58 E-value=2e-14 Score=149.58 Aligned_cols=162 Identities=14% Similarity=0.232 Sum_probs=112.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC-CC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP-SF 244 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p-~~ 244 (520)
.++|+|..++..++ .+ +.+|+..+||+|||+.++..+.... .....+|||+|. .+..||.+++.+|++ ++
T Consensus 21 ~~~~~Q~~~i~~i~----~~-~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 92 (414)
T 3oiy_A 21 DLTGYQRLWAKRIV----QG-KSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 92 (414)
T ss_dssp CCCHHHHHHHHHHT----TT-CCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHCCSSC
T ss_pred CCCHHHHHHHHHHh----cC-CCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHccCCc
Confidence 57899999999887 34 3579999999999995544433332 456789999997 677899999999986 77
Q ss_pred eEEEecCCCchhh-hHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC--------
Q 039292 245 SVLQYHGAGRTAY-SRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD-------- 315 (520)
Q Consensus 245 ~v~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn-------- 315 (520)
++..++|...... ......+... ..+|+|+|++.+..+. ..+....+++||+||||++..
T Consensus 93 ~v~~~~g~~~~~~~~~~~~~l~~~----~~~Iiv~Tp~~l~~~l-------~~~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 93 KIFGFYSSMKKEEKEKFEKSFEED----DYHILVFSTQFVSKNR-------EKLSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp CEEECCTTSCHHHHHHHHHHHHHT----CCSEEEEEHHHHHHCH-------HHHTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred eEEEEECCCChhhHHHHHHHhhcC----CCCEEEECHHHHHHHH-------HHhccccccEEEEeChHhhhhccchhhhH
Confidence 8888888765422 2222222221 3699999999997642 235556899999999998732
Q ss_pred -----cchHHHHHHHHHhh-----------hcCcEEEEeccCCCCCHH
Q 039292 316 -----KNSYRWKNLMSVAR-----------NANQRLMLTGTPLQNDLH 347 (520)
Q Consensus 316 -----~~s~~~~~l~~l~~-----------~~~~rl~LTgTPi~n~~~ 347 (520)
........+..... ...+.+++||||....+.
T Consensus 162 l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~ 209 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIR 209 (414)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSST
T ss_pred HhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhH
Confidence 22221223333222 456789999998776655
No 38
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.57 E-value=3.6e-14 Score=164.01 Aligned_cols=162 Identities=17% Similarity=0.220 Sum_probs=112.3
Q ss_pred CCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc
Q 039292 163 DFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC 241 (520)
Q Consensus 163 ~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~ 241 (520)
.+...|+|||..++..+. .+ ..+|++.+||+|||+++...+.... ..++.+||++|. .|..||.++|.+++
T Consensus 180 ~~~f~ltp~Q~~AI~~i~----~g-~dvLV~ApTGSGKTlva~l~i~~~l---~~g~rvlvl~PtraLa~Q~~~~l~~~~ 251 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCID----RG-ESVLVSAHTSAGKTVVAEYAIAQSL---KNKQRVIYTSPIKALSNQKYRELLAEF 251 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHT----TT-CCEEEECCSSSHHHHHHHHHHHHHH---HTTCEEEEEESSHHHHHHHHHHHHHHT
T ss_pred hCCCCCCHHHHHHHHHHH----cC-CCEEEECCCCCChHHHHHHHHHHHH---hcCCeEEEEcCcHHHHHHHHHHHHHHh
Confidence 334579999999999874 34 4689999999999998766554443 245789999997 46788999999998
Q ss_pred CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-hHH
Q 039292 242 PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-SYR 320 (520)
Q Consensus 242 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-s~~ 320 (520)
. .+.+++|.... ....+|+|+|++.+.+...... ..-..+++|||||||++.... ...
T Consensus 252 ~--~VglltGd~~~--------------~~~~~IlV~Tpe~L~~~L~~~~-----~~l~~l~lVVIDEaH~l~d~~rg~~ 310 (1108)
T 3l9o_A 252 G--DVGLMTGDITI--------------NPDAGCLVMTTEILRSMLYRGS-----EVMREVAWVIFDEVHYMRDKERGVV 310 (1108)
T ss_dssp S--SEEEECSSCBC--------------CCSCSEEEEEHHHHHHHHHHCS-----SHHHHEEEEEEETGGGTTSHHHHHH
T ss_pred C--CccEEeCcccc--------------CCCCCEEEeChHHHHHHHHcCc-----cccccCCEEEEhhhhhccccchHHH
Confidence 7 56666765432 1246999999999987543211 112357899999999997532 233
Q ss_pred HHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHH
Q 039292 321 WKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEF 355 (520)
Q Consensus 321 ~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~f 355 (520)
+..+........+.++|||| +.|. .++..++..
T Consensus 311 ~e~ii~~l~~~~qvl~lSAT-ipn~-~e~a~~l~~ 343 (1108)
T 3l9o_A 311 WEETIILLPDKVRYVFLSAT-IPNA-MEFAEWICK 343 (1108)
T ss_dssp HHHHHHHSCTTSEEEEEECS-CSSC-HHHHHHHHH
T ss_pred HHHHHHhcCCCceEEEEcCC-CCCH-HHHHHHHHh
Confidence 34443333356778999999 4444 444444443
No 39
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.57 E-value=1.5e-14 Score=137.97 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=100.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHH-HHH-----hCCCCCCEEEEeCCc-chhhHHHHHHH
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLML-LKH-----LNNDPGPHLIVCPAS-VLENWERELKK 239 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~-l~~-----~~~~~~~~LIV~P~s-ll~~W~~E~~~ 239 (520)
.++|+|..++..+. .+ +.+|+..+||+|||+.++..+.. +.. .......+|||||.. +..||.+++.+
T Consensus 42 ~~~~~Q~~~i~~~~----~~-~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 116 (228)
T 3iuy_A 42 KPTPIQSQAWPIIL----QG-IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116 (228)
T ss_dssp SCCHHHHHHHHHHH----TT-CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----CC-CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHH
Confidence 68999999998887 44 45799999999999876544332 211 112556799999975 67889999999
Q ss_pred hc-CCCeEEEecCCCchh-hhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc
Q 039292 240 WC-PSFSVLQYHGAGRTA-YSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN 317 (520)
Q Consensus 240 ~~-p~~~v~~~~g~~~~~-~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~ 317 (520)
+. .+..+..+.|..... ....+. .+.+|+|+|++.+...... ..+....+++||+||||++.+..
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~iiv~Tp~~l~~~~~~-----~~~~~~~~~~lViDEah~~~~~~ 183 (228)
T 3iuy_A 117 YSYKGLKSICIYGGRNRNGQIEDIS--------KGVDIIIATPGRLNDLQMN-----NSVNLRSITYLVIDEADKMLDME 183 (228)
T ss_dssp HCCTTCCEEEECC------CHHHHH--------SCCSEEEECHHHHHHHHHT-----TCCCCTTCCEEEECCHHHHHHTT
T ss_pred hcccCceEEEEECCCChHHHHHHhc--------CCCCEEEECHHHHHHHHHc-----CCcCcccceEEEEECHHHHhccc
Confidence 85 456666666553322 222221 1469999999998764321 11223458899999999975432
Q ss_pred -hHHHHHHHHHhhhcCcEEEEeccCC
Q 039292 318 -SYRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 318 -s~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
......+........+.+++|||.-
T Consensus 184 ~~~~~~~i~~~~~~~~~~l~~SAT~~ 209 (228)
T 3iuy_A 184 FEPQIRKILLDVRPDRQTVMTSATWP 209 (228)
T ss_dssp CHHHHHHHHHHSCSSCEEEEEESCCC
T ss_pred hHHHHHHHHHhCCcCCeEEEEEeeCC
Confidence 1222222222224567899999963
No 40
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.56 E-value=7.8e-15 Score=141.58 Aligned_cols=161 Identities=21% Similarity=0.232 Sum_probs=101.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHH-HHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCC-
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYL-MLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPS- 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l-~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~- 243 (520)
.++|||..++..+. .+ +.+|+..+||+|||+.++..+ ..+......+..+|||||. .+..||.+++.+++..
T Consensus 51 ~~~~~Q~~~i~~~~----~~-~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 51 MPTPIQMQAIPVML----HG-RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp SCCHHHHHHHHHHH----TT-CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHh----CC-CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 68999999998877 34 457999999999998854443 3332222344579999997 5678899999999753
Q ss_pred -CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-hHHH
Q 039292 244 -FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-SYRW 321 (520)
Q Consensus 244 -~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-s~~~ 321 (520)
..+..++|....... .......+.+|+|+|++.+........ ..+....+.+||+||||++.... ....
T Consensus 126 ~~~~~~~~~~~~~~~~------~~~~~~~~~~I~v~Tp~~l~~~l~~~~---~~~~~~~~~~lViDEah~~~~~~~~~~~ 196 (245)
T 3dkp_A 126 GFRIHMIHKAAVAAKK------FGPKSSKKFDILVTTPNRLIYLLKQDP---PGIDLASVEWLVVDESDKLFEDGKTGFR 196 (245)
T ss_dssp CCCEECCCHHHHHHTT------TSTTSCCCCCEEEECHHHHHHHHHSSS---CSCCCTTCCEEEESSHHHHHHHC--CHH
T ss_pred CceEEEEecCccHHHH------hhhhhcCCCCEEEECHHHHHHHHHhCC---CCcccccCcEEEEeChHHhcccccccHH
Confidence 445444443211100 001123357999999999976432110 01223457899999999985321 1112
Q ss_pred HHHHHH----hhhcCcEEEEeccC
Q 039292 322 KNLMSV----ARNANQRLMLTGTP 341 (520)
Q Consensus 322 ~~l~~l----~~~~~~rl~LTgTP 341 (520)
..+..+ .....+.++||||+
T Consensus 197 ~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 197 DQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp HHHHHHHHHCCCTTCEEEEEESSC
T ss_pred HHHHHHHHhcCCCCcEEEEEeccC
Confidence 222222 12345789999998
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.54 E-value=7.9e-14 Score=161.97 Aligned_cols=162 Identities=15% Similarity=0.212 Sum_probs=114.6
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCC-CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGI-AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCP 242 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~-~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p 242 (520)
.-.++|+|..++..+......+. ..+|++.+||+|||++++..+.... ..+..+||+||+. +..||.++|.++++
T Consensus 601 ~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~---~~g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 601 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV---DNHKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp CSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHH---TTTCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHH---HhCCeEEEEechHHHHHHHHHHHHHHhh
Confidence 34679999999999987665553 2579999999999998875543332 2456899999976 66789999999886
Q ss_pred C--CeEEEecCCCchhhhH-HHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchH
Q 039292 243 S--FSVLQYHGAGRTAYSR-ELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSY 319 (520)
Q Consensus 243 ~--~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~ 319 (520)
. .++..++|........ .+..+.. +..+|+|+|++.+... +...++++||+||+|++. ..
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~~~l~~----g~~dIvV~T~~ll~~~----------~~~~~l~lvIiDEaH~~g---~~ 740 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQILAEVAE----GKIDILIGTHKLLQSD----------VKFKDLGLLIVDEEHRFG---VR 740 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHHHHHT----TCCSEEEECTHHHHSC----------CCCSSEEEEEEESGGGSC---HH
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHhc----CCCCEEEECHHHHhCC----------ccccccceEEEechHhcC---hH
Confidence 4 5677777664433222 2222222 2479999999887542 223578999999999974 33
Q ss_pred HHHHHHHHhhhcCcEEEEeccCCCCCHH
Q 039292 320 RWKNLMSVARNANQRLMLTGTPLQNDLH 347 (520)
Q Consensus 320 ~~~~l~~l~~~~~~rl~LTgTPi~n~~~ 347 (520)
....+..+. ...+.++|||||+.+.+.
T Consensus 741 ~~~~l~~l~-~~~~vl~lSATp~p~~l~ 767 (1151)
T 2eyq_A 741 HKERIKAMR-ANVDILTLTATPIPRTLN 767 (1151)
T ss_dssp HHHHHHHHH-TTSEEEEEESSCCCHHHH
T ss_pred HHHHHHHhc-CCCCEEEEcCCCChhhHH
Confidence 445555552 456789999999876543
No 42
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.53 E-value=5.3e-14 Score=137.43 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=102.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHH-HHHHh---CCCCCCEEEEeCC-cchhhHHHHHHHhc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLM-LLKHL---NNDPGPHLIVCPA-SVLENWERELKKWC 241 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~-~l~~~---~~~~~~~LIV~P~-sll~~W~~E~~~~~ 241 (520)
.++|+|..++..++. + +.+|+..++|+|||+.++..+. .+... ...+..+|||+|. .+..||.+++.+++
T Consensus 76 ~~~~~Q~~~i~~~~~----~-~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~ 150 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----G-RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150 (262)
T ss_dssp BCCHHHHHHHHHHHH----T-CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhC----C-CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHH
Confidence 689999999988874 3 3479999999999988654443 33221 1245679999997 56788999999987
Q ss_pred CC--CeEEEecCCCchh-hhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-
Q 039292 242 PS--FSVLQYHGAGRTA-YSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN- 317 (520)
Q Consensus 242 p~--~~v~~~~g~~~~~-~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~- 317 (520)
.. ..+..+.|..... ....+.. +.+|+|+|++.+....... ..+....+++||+||||++....
T Consensus 151 ~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~Iiv~Tp~~l~~~~~~~----~~~~~~~l~~lViDEah~l~~~~~ 218 (262)
T 3ly5_A 151 THHVHTYGLIMGGSNRSAEAQKLGN--------GINIIVATPGRLLDHMQNT----PGFMYKNLQCLVIDEADRILDVGF 218 (262)
T ss_dssp TTCCSCEEEECSSSCHHHHHHHHHH--------CCSEEEECHHHHHHHHHHC----TTCCCTTCCEEEECSHHHHHHTTC
T ss_pred hhcCceEEEEECCCCHHHHHHHhcC--------CCCEEEEcHHHHHHHHHcc----CCcccccCCEEEEcChHHHhhhhH
Confidence 53 4555555543322 2222211 3699999999987643211 11223457899999999975421
Q ss_pred hHHHHHHHHHhhhcCcEEEEeccCC
Q 039292 318 SYRWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 318 s~~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
......+........+.++||||+-
T Consensus 219 ~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 219 EEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp HHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred HHHHHHHHHhCCCCCeEEEEEecCC
Confidence 1222233332224567899999985
No 43
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.52 E-value=8.8e-14 Score=134.08 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=102.2
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHH-HHHHh----CCCCCCEEEEeCC-cchhhHHHHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLM-LLKHL----NNDPGPHLIVCPA-SVLENWERELKK 239 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~-~l~~~----~~~~~~~LIV~P~-sll~~W~~E~~~ 239 (520)
..++|||..++..+. .| +.+|+..+||+|||+.++..+. .+... ......+|||||. .+..||.+.+.+
T Consensus 50 ~~~~~~Q~~~i~~~~----~g-~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~ 124 (242)
T 3fe2_A 50 TEPTAIQAQGWPVAL----SG-LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAE 124 (242)
T ss_dssp CSCCHHHHHHHHHHH----HT-CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CC-CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 368999999998877 34 3579999999999988654433 33221 1245679999996 466789888888
Q ss_pred hc--CCCeEEEecCCCchh-hhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc
Q 039292 240 WC--PSFSVLQYHGAGRTA-YSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK 316 (520)
Q Consensus 240 ~~--p~~~v~~~~g~~~~~-~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~ 316 (520)
++ .++.+..+.|..... ....+.. +.+|+|+|++.+..... ...+....+++||+||||++...
T Consensus 125 ~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~I~v~Tp~~l~~~l~-----~~~~~~~~~~~lViDEah~l~~~ 191 (242)
T 3fe2_A 125 YCRACRLKSTCIYGGAPKGPQIRDLER--------GVEICIATPGRLIDFLE-----CGKTNLRRTTYLVLDEADRMLDM 191 (242)
T ss_dssp HHHHTTCCEEEECTTSCHHHHHHHHHH--------CCSEEEECHHHHHHHHH-----HTSCCCTTCCEEEETTHHHHHHT
T ss_pred HHhhcCceEEEEECCCChHHHHHHhcC--------CCCEEEECHHHHHHHHH-----cCCCCcccccEEEEeCHHHHhhh
Confidence 75 246666666554332 2222221 36999999999976432 11223346789999999997542
Q ss_pred c-hHHHHHHHHHhhhcCcEEEEeccC
Q 039292 317 N-SYRWKNLMSVARNANQRLMLTGTP 341 (520)
Q Consensus 317 ~-s~~~~~l~~l~~~~~~rl~LTgTP 341 (520)
. ......+........+.+++|||+
T Consensus 192 ~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 192 GFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp TCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred CcHHHHHHHHHhCCccceEEEEEeec
Confidence 2 122222222222456689999996
No 44
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.51 E-value=2.3e-14 Score=153.36 Aligned_cols=159 Identities=11% Similarity=0.035 Sum_probs=104.0
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCCCe
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPSFS 245 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~ 245 (520)
.++|||..++..++.. +.+.+|+..+||+|||++++..+...........++|||||.. ++.||.+.+.+++....
T Consensus 141 ~p~~~Q~~ai~~i~~~---~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~ 217 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN---PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTE 217 (508)
T ss_dssp ECCCTTSSSHHHHHCS---SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSS
T ss_pred CcHHHHHHHHHHHHcC---CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccC
Confidence 6899999999888732 1246799999999999987665544433344456899999975 78899999999986544
Q ss_pred EEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc--chHHHHH
Q 039292 246 VLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK--NSYRWKN 323 (520)
Q Consensus 246 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~--~s~~~~~ 323 (520)
+.+..+........ .....+|+|+|++.+...... ..+....+++||+||||++... .......
T Consensus 218 ~~~~~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~l~~-----~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~ 283 (508)
T 3fho_A 218 VKTAFGIKDSVPKG---------AKIDAQIVIGTPGTVMDLMKR-----RQLDARDIKVFVLDEADNMLDQQGLGDQSMR 283 (508)
T ss_dssp CCEEC-------------------CCCCSEEEECHHHHHHHHHT-----TCSCCTTCCEEEECCHHHHTTC--CHHHHHH
T ss_pred eeEEEEeCCccccc---------ccCCCCEEEECHHHHHHHHHc-----CCccccCCCEEEEechhhhcccCCcHHHHHH
Confidence 33333222111100 112469999999998763321 1123346899999999998642 2233344
Q ss_pred HHHHhhhcCcEEEEeccCC
Q 039292 324 LMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 324 l~~l~~~~~~rl~LTgTPi 342 (520)
+........+.++|||||-
T Consensus 284 i~~~~~~~~~~i~lSAT~~ 302 (508)
T 3fho_A 284 IKHLLPRNTQIVLFSATFS 302 (508)
T ss_dssp HHHHSCTTCEEEEEESCCS
T ss_pred HHHhCCcCCeEEEEeCCCC
Confidence 4443334566799999994
No 45
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.51 E-value=4.3e-14 Score=146.27 Aligned_cols=160 Identities=11% Similarity=0.059 Sum_probs=105.8
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhc---
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWC--- 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~--- 241 (520)
..++|+|..++..++.. +.+.+|+..+||+|||++++..+............+|||||.. +..||.+.+.++.
T Consensus 46 ~~~~~~Q~~~i~~~~~~---~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 122 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE---PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 122 (412)
T ss_dssp CSCCHHHHHHHHHHHSS---SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred CCCCHHHHHHHHHHhcC---CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhc
Confidence 36899999999888732 1245799999999999987655543333234455899999975 6677877777765
Q ss_pred CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC--cchH
Q 039292 242 PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD--KNSY 319 (520)
Q Consensus 242 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn--~~s~ 319 (520)
+...+....|....... .....+|+|+|++.+...... ...+....+++||+||||++.. ....
T Consensus 123 ~~~~~~~~~~~~~~~~~----------~~~~~~ivv~T~~~l~~~~~~----~~~~~~~~~~~iViDEah~~~~~~~~~~ 188 (412)
T 3fht_A 123 PELKLAYAVRGNKLERG----------QKISEQIVIGTPGTVLDWCSK----LKFIDPKKIKVFVLDEADVMIATQGHQD 188 (412)
T ss_dssp TTCCEEEECTTCCCCTT----------CCCCCSEEEECHHHHHHHHTT----SCSSCGGGCCEEEEETHHHHHSTTTTHH
T ss_pred ccceEEEeecCcchhhh----------hcCCCCEEEECchHHHHHHHh----cCCcChhhCcEEEEeCHHHHhhcCCcHH
Confidence 56677666655432211 112468999999999764321 0122234689999999998843 2223
Q ss_pred HHHHHHHHhhhcCcEEEEeccCC
Q 039292 320 RWKNLMSVARNANQRLMLTGTPL 342 (520)
Q Consensus 320 ~~~~l~~l~~~~~~rl~LTgTPi 342 (520)
....+........+.+++||||-
T Consensus 189 ~~~~~~~~~~~~~~~i~~SAT~~ 211 (412)
T 3fht_A 189 QSIRIQRMLPRNCQMLLFSATFE 211 (412)
T ss_dssp HHHHHHHTSCTTCEEEEEESCCC
T ss_pred HHHHHHhhCCCCceEEEEEeecC
Confidence 33333333334567899999995
No 46
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.49 E-value=3.9e-13 Score=154.01 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=112.5
Q ss_pred CccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP 242 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p 242 (520)
+.-.|+|||..++.++. .+ ..+|++.+||+|||+++...+..... .++++||++|. .+..||.++|.++++
T Consensus 83 ~~f~L~~~Q~eai~~l~----~g-~~vLV~apTGSGKTlva~lai~~~l~---~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 83 YPFTLDPFQDTAISCID----RG-ESVLVSAHTSAGKTVVAEYAIAQSLK---NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CSSCCCHHHHHHHHHHH----HT-CEEEEECCTTSCHHHHHHHHHHHHHH---TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHH----cC-CCEEEECCCCCChHHHHHHHHHHHhc---cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 34469999999999986 33 45799999999999987554443322 35789999997 677889999999887
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-hHHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-SYRW 321 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-s~~~ 321 (520)
.+.+++|..... ...+|+|+|++.+.+.... .......+++|||||||++.+.. ...+
T Consensus 155 --~vglltGd~~~~--------------~~~~IvV~Tpe~L~~~L~~-----~~~~l~~l~lVViDEaH~l~d~~rg~~~ 213 (1010)
T 2xgj_A 155 --DVGLMTGDITIN--------------PDAGCLVMTTEILRSMLYR-----GSEVMREVAWVIFDEVHYMRDKERGVVW 213 (1010)
T ss_dssp --CEEEECSSCEEC--------------TTCSEEEEEHHHHHHHHHH-----TCTTGGGEEEEEEETGGGGGCTTTHHHH
T ss_pred --CEEEEeCCCccC--------------CCCCEEEEcHHHHHHHHHc-----CcchhhcCCEEEEechhhhcccchhHHH
Confidence 667777765432 1468999999999764321 11223468999999999997642 3344
Q ss_pred HHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHH
Q 039292 322 KNLMSVARNANQRLMLTGTPLQNDLHELWSLLE 354 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~ 354 (520)
..+........+.++||||+- +..++...+.
T Consensus 214 e~il~~l~~~~~il~LSATi~--n~~e~a~~l~ 244 (1010)
T 2xgj_A 214 EETIILLPDKVRYVFLSATIP--NAMEFAEWIC 244 (1010)
T ss_dssp HHHHHHSCTTCEEEEEECCCT--THHHHHHHHH
T ss_pred HHHHHhcCCCCeEEEEcCCCC--CHHHHHHHHH
Confidence 444443335678899999953 3455544443
No 47
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.48 E-value=2.4e-13 Score=142.64 Aligned_cols=159 Identities=16% Similarity=0.146 Sum_probs=104.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHH-HHHHHhC----CCCCCEEEEeCC-cchhhHHHHHHHh
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYL-MLLKHLN----NDPGPHLIVCPA-SVLENWERELKKW 240 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l-~~l~~~~----~~~~~~LIV~P~-sll~~W~~E~~~~ 240 (520)
.++|+|..++..++ .+ +.+|+..+||+|||+..+..+ ..+.... .....+|||||+ .+..||.+++.++
T Consensus 78 ~pt~iQ~~ai~~i~----~g-~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~ 152 (434)
T 2db3_A 78 IPTPIQKCSIPVIS----SG-RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152 (434)
T ss_dssp SCCHHHHHHHHHHH----TT-CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh----cC-CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH
Confidence 68999999999887 44 467999999999998765443 3343321 124579999997 5778899999998
Q ss_pred cCC--CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-
Q 039292 241 CPS--FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN- 317 (520)
Q Consensus 241 ~p~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~- 317 (520)
+.. +++.+++|........ ..+. .+.+|+|+|++.+...... ..+....+++||+||||++.+..
T Consensus 153 ~~~~~~~~~~~~gg~~~~~~~--~~l~-----~~~~Ivv~Tp~~l~~~l~~-----~~~~l~~~~~lVlDEah~~~~~gf 220 (434)
T 2db3_A 153 AFESYLKIGIVYGGTSFRHQN--ECIT-----RGCHVVIATPGRLLDFVDR-----TFITFEDTRFVVLDEADRMLDMGF 220 (434)
T ss_dssp TTTSSCCCCEECTTSCHHHHH--HHHT-----TCCSEEEECHHHHHHHHHT-----TSCCCTTCCEEEEETHHHHTSTTT
T ss_pred hccCCcEEEEEECCCCHHHHH--HHhh-----cCCCEEEEChHHHHHHHHh-----CCcccccCCeEEEccHhhhhccCc
Confidence 743 4555555544322111 1111 2579999999999764321 12234468899999999986542
Q ss_pred -hHHHHHHHHHh-hhcCcEEEEeccCC
Q 039292 318 -SYRWKNLMSVA-RNANQRLMLTGTPL 342 (520)
Q Consensus 318 -s~~~~~l~~l~-~~~~~rl~LTgTPi 342 (520)
....+.+..+. ....+.+++|||+-
T Consensus 221 ~~~~~~i~~~~~~~~~~q~l~~SAT~~ 247 (434)
T 2db3_A 221 SEDMRRIMTHVTMRPEHQTLMFSATFP 247 (434)
T ss_dssp HHHHHHHHHCTTSCSSCEEEEEESCCC
T ss_pred HHHHHHHHHhcCCCCCceEEEEeccCC
Confidence 22222222211 13467899999984
No 48
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.46 E-value=2.1e-13 Score=151.74 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=110.3
Q ss_pred CCcHHHHHHHHHHHHHHhcCC-CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC--
Q 039292 167 VLKPYQLVGVNFLLLLYRKGI-AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP-- 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~-~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p-- 242 (520)
.|+|+|..++..+......+. ..+|+..+||+|||++++..+..... .+..+||++|+ .+..||.+.+.+|++
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~---~g~qvlvlaPtr~La~Q~~~~l~~~~~~~ 444 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYE---AGFQTAFMVPTSILAIQHYRRTVESFSKF 444 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHH---HTSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHHHHHHHHHHhhhc
Confidence 799999999999987654432 24699999999999988766544332 34689999997 567889999999986
Q ss_pred CCeEEEecCCCchhhhHH-HHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHH
Q 039292 243 SFSVLQYHGAGRTAYSRE-LSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRW 321 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~-~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~ 321 (520)
++++..++|......... +..+.. +..+|+|+|++.+... +...++++||+||+|++.... +
T Consensus 445 gi~v~~l~G~~~~~~r~~~~~~l~~----g~~~IvVgT~~ll~~~----------~~~~~l~lVVIDEaHr~g~~q--r- 507 (780)
T 1gm5_A 445 NIHVALLIGATTPSEKEKIKSGLRN----GQIDVVIGTHALIQED----------VHFKNLGLVIIDEQHRFGVKQ--R- 507 (780)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHS----SCCCEEEECTTHHHHC----------CCCSCCCEEEEESCCCC--------
T ss_pred CceEEEEeCCCCHHHHHHHHHHHhc----CCCCEEEECHHHHhhh----------hhccCCceEEecccchhhHHH--H-
Confidence 578888888765443332 222222 2479999999887542 234568999999999983221 1
Q ss_pred HHHHHHhhhcCcEEEEeccCCCCCH
Q 039292 322 KNLMSVARNANQRLMLTGTPLQNDL 346 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi~n~~ 346 (520)
..+.... ...+.++|||||+.+.+
T Consensus 508 ~~l~~~~-~~~~vL~mSATp~p~tl 531 (780)
T 1gm5_A 508 EALMNKG-KMVDTLVMSATPIPRSM 531 (780)
T ss_dssp CCCCSSS-SCCCEEEEESSCCCHHH
T ss_pred HHHHHhC-CCCCEEEEeCCCCHHHH
Confidence 1111111 35779999999987544
No 49
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.44 E-value=3.7e-13 Score=139.70 Aligned_cols=158 Identities=13% Similarity=0.100 Sum_probs=103.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHH-HHHHHHhCC-----------------CCCCEEEEeCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITY-LMLLKHLNN-----------------DPGPHLIVCPA 227 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~-l~~l~~~~~-----------------~~~~~LIV~P~ 227 (520)
..++|+|..++..+. .+ +.+|+..+||+|||+.++.. +..+..... ....+|||+|.
T Consensus 36 ~~~~~~Q~~~i~~i~----~~-~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt 110 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIK----EK-RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPT 110 (417)
T ss_dssp CSCCHHHHHHHHHHH----TT-CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSS
T ss_pred CCCCHHHHHHHHHHc----cC-CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCc
Confidence 378999999998776 34 46799999999999865443 333332111 12469999997
Q ss_pred -cchhhHHHHHHHhcC--CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccE
Q 039292 228 -SVLENWERELKKWCP--SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSC 304 (520)
Q Consensus 228 -sll~~W~~E~~~~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~ 304 (520)
.+..||.+++.+++. ++.+..++|....... ...+. .+.+|+|+|++.+...... ..+....+++
T Consensus 111 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~--~~~~~-----~~~~I~v~Tp~~l~~~l~~-----~~~~~~~~~~ 178 (417)
T 2i4i_A 111 RELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQ--IRDLE-----RGCHLLVATPGRLVDMMER-----GKIGLDFCKY 178 (417)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHH--HHHHT-----TCCSEEEECHHHHHHHHHT-----TSBCCTTCCE
T ss_pred HHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHH--HHHhh-----CCCCEEEEChHHHHHHHHc-----CCcChhhCcE
Confidence 677889999998864 4666767665433221 11111 2469999999999764321 1123346789
Q ss_pred EEEeCccccCCcchHHHHHHHHHhh-------hcCcEEEEeccCC
Q 039292 305 VLMDEAHALKDKNSYRWKNLMSVAR-------NANQRLMLTGTPL 342 (520)
Q Consensus 305 vIiDEaH~ikn~~s~~~~~l~~l~~-------~~~~rl~LTgTPi 342 (520)
||+||||++.... ....+..+.. ...+.+++||||-
T Consensus 179 iViDEah~~~~~~--~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~ 221 (417)
T 2i4i_A 179 LVLDEADRMLDMG--FEPQIRRIVEQDTMPPKGVRHTMMFSATFP 221 (417)
T ss_dssp EEESSHHHHHHTT--CHHHHHHHHTSSSCCCBTTBEEEEEESCCC
T ss_pred EEEEChhHhhccC--cHHHHHHHHHhccCCCcCCcEEEEEEEeCC
Confidence 9999999985432 1222333221 1345799999984
No 50
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.44 E-value=3.6e-13 Score=144.44 Aligned_cols=170 Identities=16% Similarity=0.185 Sum_probs=114.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCCe
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSFS 245 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~ 245 (520)
.++|+|.+++..++ .+ +.+|+..+||+|||+.++..+ +. ..+.+|||+|. .++.+|.+.+..+ +..
T Consensus 25 ~~r~~Q~~~i~~il----~g-~d~lv~apTGsGKTl~~~lp~--l~----~~g~~lvi~P~~aL~~q~~~~l~~~--gi~ 91 (523)
T 1oyw_A 25 QFRPGQEEIIDTVL----SG-RDCLVVMPTGGGKSLCYQIPA--LL----LNGLTVVVSPLISLMKDQVDQLQAN--GVA 91 (523)
T ss_dssp SCCTTHHHHHHHHH----TT-CCEEEECSCHHHHHHHHHHHH--HH----SSSEEEEECSCHHHHHHHHHHHHHT--TCC
T ss_pred CCCHHHHHHHHHHH----cC-CCEEEECCCCcHHHHHHHHHH--HH----hCCCEEEECChHHHHHHHHHHHHHc--CCc
Confidence 68999999999987 44 457999999999998554322 21 13679999996 6778899999987 455
Q ss_pred EEEecCCCchhhhHH-HHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc---hHHH
Q 039292 246 VLQYHGAGRTAYSRE-LSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN---SYRW 321 (520)
Q Consensus 246 v~~~~g~~~~~~~~~-~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~---s~~~ 321 (520)
+..++|......... ...... +..+|+++|++.+.... ....+....+.+|||||||.+.... ...+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~----~~~~ilv~Tpe~l~~~~-----~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~ 162 (523)
T 1oyw_A 92 AACLNSTQTREQQLEVMTGCRT----GQIRLLYIAPERLMLDN-----FLEHLAHWNPVLLAVDEAHCISQWGHDFRPEY 162 (523)
T ss_dssp EEEECTTSCHHHHHHHHHHHHH----TCCSEEEECHHHHTSTT-----HHHHHTTSCEEEEEESSGGGGCTTSSCCCHHH
T ss_pred EEEEeCCCCHHHHHHHHHHHhc----CCCCEEEECHHHHhChH-----HHHHHhhCCCCEEEEeCccccCcCCCccHHHH
Confidence 666666654332222 222222 24799999999996422 3445666789999999999986422 1222
Q ss_pred HHHHHHhh--hcCcEEEEeccCCCCCHHHHHHHHHHhCC
Q 039292 322 KNLMSVAR--NANQRLMLTGTPLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 322 ~~l~~l~~--~~~~rl~LTgTPi~n~~~el~~ll~fl~p 358 (520)
..+..+.. ...++++|||||..+...++...+.+-.|
T Consensus 163 ~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~ 201 (523)
T 1oyw_A 163 AALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP 201 (523)
T ss_dssp HGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSC
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCC
Confidence 22222211 34678999999998777777776654333
No 51
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.41 E-value=2.2e-13 Score=144.62 Aligned_cols=172 Identities=12% Similarity=0.120 Sum_probs=107.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHH---hc
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKK---WC 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~---~~ 241 (520)
..++|+|..++..++.. +.+.+|+..+||+|||++++..+............+|||+|.. +..||.+.+.+ ++
T Consensus 113 ~~p~~~Q~~ai~~il~~---~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~ 189 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAE---PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 189 (479)
T ss_dssp CSCCHHHHHHHHHHTSB---SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHcC---CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhC
Confidence 46899999999988731 1245799999999999886544432222223344799999975 56777666555 45
Q ss_pred CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--hH
Q 039292 242 PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN--SY 319 (520)
Q Consensus 242 p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~--s~ 319 (520)
+.+.+....+....... .....+|+|+|++.+...... ...+...++++|||||||++.... ..
T Consensus 190 ~~~~~~~~~~~~~~~~~----------~~~~~~Ivv~Tp~~l~~~l~~----~~~~~~~~~~~iViDEah~~~~~~~~~~ 255 (479)
T 3fmp_B 190 PELKLAYAVRGNKLERG----------QKISEQIVIGTPGTVLDWCSK----LKFIDPKKIKVFVLDEADVMIATQGHQD 255 (479)
T ss_dssp TTCCEEEESTTCCCCTT----------CCCCCSEEEECHHHHHHHHTT----SCCCCGGGCCEEEECCHHHHHTSTTHHH
T ss_pred CCceEEEEeCCcccccc----------ccCCCCEEEECchHHHHHHHh----cCCcCcccCCEEEEECHHHHhhcCCcHH
Confidence 66777666655432211 112458999999999764321 112233578999999999885422 22
Q ss_pred HHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHHHhCC
Q 039292 320 RWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMMP 358 (520)
Q Consensus 320 ~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~fl~p 358 (520)
....+........+.+++||||-. +.+.+.....+
T Consensus 256 ~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~~~ 290 (479)
T 3fmp_B 256 QSIRIQRMLPRNCQMLLFSATFED----SVWKFAQKVVP 290 (479)
T ss_dssp HHHHHHTTSCTTSEEEEEESCCCH----HHHHHHHHHSS
T ss_pred HHHHHHhhCCccceEEEEeCCCCH----HHHHHHHHHcC
Confidence 222333322244678999999953 44444444443
No 52
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=5.1e-12 Score=137.33 Aligned_cols=164 Identities=16% Similarity=0.129 Sum_probs=103.0
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHH-HHHHhC---CCCCCEEEEeCC-cchhhHHHHHHHhc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLM-LLKHLN---NDPGPHLIVCPA-SVLENWERELKKWC 241 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~-~l~~~~---~~~~~~LIV~P~-sll~~W~~E~~~~~ 241 (520)
.++|||.+++..++. ...+.+|+..+||+|||+.++..+. .+.... .....+|||||. .|..||.+++.+++
T Consensus 43 ~~~~~Q~~~i~~il~---~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~ 119 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS---SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 119 (579)
T ss_dssp SCCHHHHHHHHHHHC---SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHH
Confidence 699999999988872 1124679999999999987554443 332211 223479999996 56788999999874
Q ss_pred ------CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC
Q 039292 242 ------PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD 315 (520)
Q Consensus 242 ------p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn 315 (520)
+...+....|..... ..+..+... ..+|+|+|++.+..+... ........+++|||||||++..
T Consensus 120 ~~~~~~~~~~~~~~~gg~~~~--~~~~~l~~~----~~~IlV~Tp~~l~~~l~~----~~~~~~~~~~~lViDEah~l~~ 189 (579)
T 3sqw_A 120 DMNYGLKKYACVSLVGGTDFR--AAMNKMNKL----RPNIVIATPGRLIDVLEK----YSNKFFRFVDYKVLDEADRLLE 189 (579)
T ss_dssp HHCGGGTTSCEEEECTTSCHH--HHHHHHHHH----CCSEEEECHHHHHHHHHH----HHHHHCTTCCEEEEETHHHHTS
T ss_pred hhcccccceEEEEEECCccHH--HHHHHHhcC----CCCEEEECHHHHHHHHHh----ccccccccCCEEEEEChHHhhc
Confidence 344555555443222 112222111 359999999999765421 1122334689999999999865
Q ss_pred cc-hHHHHHHHHHhhh-------cCcEEEEeccCCC
Q 039292 316 KN-SYRWKNLMSVARN-------ANQRLMLTGTPLQ 343 (520)
Q Consensus 316 ~~-s~~~~~l~~l~~~-------~~~rl~LTgTPi~ 343 (520)
.. ......+...... ..+.+++|||+-.
T Consensus 190 ~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 225 (579)
T 3sqw_A 190 IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD 225 (579)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred CCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh
Confidence 32 1222222222111 3468999999863
No 53
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.40 E-value=1.6e-12 Score=148.84 Aligned_cols=162 Identities=16% Similarity=0.217 Sum_probs=111.7
Q ss_pred CccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC
Q 039292 164 FQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP 242 (520)
Q Consensus 164 ~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p 242 (520)
+.-.|+|+|..++..+. .+ ..+|++.+||+|||++++..+..+.. .++.+|||+|. .+..||.+++.++++
T Consensus 36 ~~f~l~~~Q~~aI~~il----~g-~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 36 WPFELDTFQKEAVYHLE----QG-DSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CSSCCCHHHHHHHHHHH----TT-CEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred CCCCCCHHHHHHHHHHH----cC-CCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 34479999999998876 34 46899999999999876554444322 45679999995 577889999999998
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc-hHHH
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN-SYRW 321 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~-s~~~ 321 (520)
+..+..++|..... ...+|+|+|++.+.+.... .......+++|||||||++.+.. ...+
T Consensus 108 ~~~v~~l~G~~~~~--------------~~~~IlV~Tpe~L~~~l~~-----~~~~l~~l~lvViDEaH~l~d~~~g~~~ 168 (997)
T 4a4z_A 108 DVNIGLITGDVQIN--------------PDANCLIMTTEILRSMLYR-----GADLIRDVEFVIFDEVHYVNDQDRGVVW 168 (997)
T ss_dssp -CCEEEECSSCEEC--------------TTSSEEEEEHHHHHHHHHH-----TCSGGGGEEEEEECCTTCCCTTCTTCCH
T ss_pred CCeEEEEeCCCccC--------------CCCCEEEECHHHHHHHHHh-----CchhhcCCCEEEEECcccccccchHHHH
Confidence 88899888875422 2469999999999764321 11223468999999999986531 2223
Q ss_pred HHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHH
Q 039292 322 KNLMSVARNANQRLMLTGTPLQNDLHELWSLLE 354 (520)
Q Consensus 322 ~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~ 354 (520)
..+........+.++|||||- +..++...+.
T Consensus 169 e~ii~~l~~~v~iIlLSAT~~--n~~ef~~~l~ 199 (997)
T 4a4z_A 169 EEVIIMLPQHVKFILLSATVP--NTYEFANWIG 199 (997)
T ss_dssp HHHHHHSCTTCEEEEEECCCT--THHHHHHHHH
T ss_pred HHHHHhcccCCCEEEEcCCCC--ChHHHHHHHh
Confidence 333333234567899999974 2335544444
No 54
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.38 E-value=7.9e-13 Score=131.72 Aligned_cols=160 Identities=12% Similarity=0.077 Sum_probs=101.3
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHH-HHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhc--
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAI-TYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWC-- 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~ai-a~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~-- 241 (520)
..+.|+|..++..++.. ..+.+|+..++|+|||+..+ .++..+ ........+|||||+. +..|+.+.+..+.
T Consensus 113 ~~pt~iQ~~ai~~il~~---~~~~~l~~a~TGsGKT~a~~lp~l~~l-~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~ 188 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAE---PPQNLIAQSQSGTGKTAAFVLAMLSQV-EPANKYPQCLCLSPTYELALQTGKVIEQMGKF 188 (300)
T ss_dssp CSCCHHHHHHHHHHTSS---SCCCEEEECCTTSSHHHHHHHHHHHHC-CTTSCSCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHcC---CCCeEEEECCCCCCccHHHHHHHHHhh-hccCCCceEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 46899999999877621 12457999999999998754 333332 2123334699999975 5677877777664
Q ss_pred -CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch--
Q 039292 242 -PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS-- 318 (520)
Q Consensus 242 -p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s-- 318 (520)
+.+.+..+.|....... .....+|+|+|++.+..+.... ..+....+.+|||||||++.....
T Consensus 189 ~~~~~~~~~~~~~~~~~~----------~~~~~~IlV~TP~~l~~~l~~~----~~~~l~~l~~lVlDEad~l~~~~~~~ 254 (300)
T 3fmo_B 189 YPELKLAYAVRGNKLERG----------QKISEQIVIGTPGTVLDWCSKL----KFIDPKKIKVFVLDEADVMIATQGHQ 254 (300)
T ss_dssp STTCCEEEESTTCCCCTT----------CCCCCSEEEECHHHHHHHHTTT----CCCCGGGCSEEEETTHHHHHHSTTHH
T ss_pred CCCcEEEEEeCCccHhhh----------hcCCCCEEEECHHHHHHHHHhc----CCCChhhceEEEEeCHHHHhhccCcH
Confidence 56777776665432211 1124689999999987643210 112234678999999999853111
Q ss_pred HHHHHHHHHhhhcCcEEEEeccCCC
Q 039292 319 YRWKNLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 319 ~~~~~l~~l~~~~~~rl~LTgTPi~ 343 (520)
.....+........+.+++|||+-.
T Consensus 255 ~~~~~i~~~~~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 255 DQSIRIQRMLPRNCQMLLFSATFED 279 (300)
T ss_dssp HHHHHHHTTSCTTCEEEEEESCCCH
T ss_pred HHHHHHHHhCCCCCEEEEEeccCCH
Confidence 2222222222244678999999953
No 55
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.38 E-value=8.9e-12 Score=134.82 Aligned_cols=164 Identities=16% Similarity=0.126 Sum_probs=101.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHH-HHHHhC---CCCCCEEEEeCC-cchhhHHHHHHHhc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLM-LLKHLN---NDPGPHLIVCPA-SVLENWERELKKWC 241 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~-~l~~~~---~~~~~~LIV~P~-sll~~W~~E~~~~~ 241 (520)
.++|+|..++..++. ...+.+|+..+||+|||+.++..+. .+.... .....+|||+|. .|..||.+++.+++
T Consensus 94 ~~~~~Q~~~i~~~l~---~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 94 GLTPVQQKTIKPILS---SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SCCHHHHHHHHHHHS---SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc---CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 699999999988872 1124689999999999987655443 332211 123479999996 56788999999863
Q ss_pred ------CCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC
Q 039292 242 ------PSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD 315 (520)
Q Consensus 242 ------p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn 315 (520)
+...+..+.|...... ....+... ..+|+|+|++.+...... ........+++|||||||++..
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~~--~~~~~~~~----~~~Iiv~Tp~~l~~~l~~----~~~~~~~~~~~lViDEah~l~~ 240 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFRA--AMNKMNKL----RPNIVIATPGRLIDVLEK----YSNKFFRFVDYKVLDEADRLLE 240 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHHH--HHHHHHHH----CCSEEEECHHHHHHHHHH----HHHHHCTTCCEEEEETHHHHTS
T ss_pred hhccccCceeEEEEECCcCHHH--HHHHHhcC----CCCEEEECcHHHHHHHHh----ccccccccceEEEEeCHHHHhc
Confidence 2344555554432221 11111111 369999999999764421 1122334589999999999865
Q ss_pred cc-hHHHHHHHHHhhh-------cCcEEEEeccCCC
Q 039292 316 KN-SYRWKNLMSVARN-------ANQRLMLTGTPLQ 343 (520)
Q Consensus 316 ~~-s~~~~~l~~l~~~-------~~~rl~LTgTPi~ 343 (520)
.. ......+...... ..+.+++|||+-.
T Consensus 241 ~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~ 276 (563)
T 3i5x_A 241 IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD 276 (563)
T ss_dssp TTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT
T ss_pred cchHHHHHHHHHhhhhccccCccCceEEEEEccCCH
Confidence 32 1222222222111 3468999999853
No 56
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.36 E-value=3.7e-12 Score=138.29 Aligned_cols=172 Identities=18% Similarity=0.209 Sum_probs=110.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCCe
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSFS 245 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~ 245 (520)
.++|+|.+++..++ .| +.+|+..+||+|||+..+..+ +. ..+.+|||+|. +|+.||.+.+..+ ++.
T Consensus 44 ~~rp~Q~~~i~~il----~g-~d~lv~~pTGsGKTl~~~lpa--l~----~~g~~lVisP~~~L~~q~~~~l~~~--gi~ 110 (591)
T 2v1x_A 44 KFRPLQLETINVTM----AG-KEVFLVMPTGGGKSLCYQLPA--LC----SDGFTLVICPLISLMEDQLMVLKQL--GIS 110 (591)
T ss_dssp SCCTTHHHHHHHHH----TT-CCEEEECCTTSCTTHHHHHHH--HT----SSSEEEEECSCHHHHHHHHHHHHHH--TCC
T ss_pred CCCHHHHHHHHHHH----cC-CCEEEEECCCChHHHHHHHHH--HH----cCCcEEEEeCHHHHHHHHHHHHHhc--CCc
Confidence 78999999999887 34 457999999999998544332 21 24689999996 6788899999998 566
Q ss_pred EEEecCCCchhhhHHH-HHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc----hH-
Q 039292 246 VLQYHGAGRTAYSREL-SSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN----SY- 319 (520)
Q Consensus 246 v~~~~g~~~~~~~~~~-~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~----s~- 319 (520)
+..++|.......... ..+. ......+|+++|++.+.............+....+.+|||||||++.... ..
T Consensus 111 ~~~l~~~~~~~~~~~~~~~l~--~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~ 188 (591)
T 2v1x_A 111 ATMLNASSSKEHVKWVHAEMV--NKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDY 188 (591)
T ss_dssp EEECCSSCCHHHHHHHHHHHH--CTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGG
T ss_pred EEEEeCCCCHHHHHHHHHHhh--cccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccccccccHHHH
Confidence 7777776543322221 1111 12236799999999885310000001122334478999999999985421 11
Q ss_pred -HHHHHHHHhhhcCcEEEEeccCCCCCHHHHHHHHH
Q 039292 320 -RWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLE 354 (520)
Q Consensus 320 -~~~~l~~l~~~~~~rl~LTgTPi~n~~~el~~ll~ 354 (520)
....+.... ...++++|||||-.....++...+.
T Consensus 189 ~~l~~l~~~~-~~~~ii~lSAT~~~~v~~~i~~~l~ 223 (591)
T 2v1x_A 189 KALGILKRQF-PNASLIGLTATATNHVLTDAQKILC 223 (591)
T ss_dssp GGGGHHHHHC-TTSEEEEEESSCCHHHHHHHHHHTT
T ss_pred HHHHHHHHhC-CCCcEEEEecCCCHHHHHHHHHHhC
Confidence 111222221 4567899999997655555555443
No 57
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.34 E-value=3e-12 Score=142.74 Aligned_cols=161 Identities=17% Similarity=0.187 Sum_probs=107.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHH-HHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcC-C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQA-ITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCP-S 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~a-ia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p-~ 243 (520)
.|+|+|.+++..++. .+ ..+|++.+||+|||+++ ++++..+.. .++.+|||+|. .+..+|.+++.++.+ +
T Consensus 23 ~l~~~Q~~~i~~~~~---~~-~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~~l~i~P~raLa~q~~~~~~~l~~~g 95 (720)
T 2zj8_A 23 SFYPPQAEALKSGIL---EG-KNALISIPTASGKTLIAEIAMVHRILT---QGGKAVYIVPLKALAEEKFQEFQDWEKIG 95 (720)
T ss_dssp BCCHHHHHHHTTTGG---GT-CEEEEECCGGGCHHHHHHHHHHHHHHH---HCSEEEEECSSGGGHHHHHHHTGGGGGGT
T ss_pred CCCHHHHHHHHHHhc---CC-CcEEEEcCCccHHHHHHHHHHHHHHHh---CCCEEEEEcCcHHHHHHHHHHHHHHHhcC
Confidence 699999999986321 23 45799999999999988 444444432 24789999996 677889999976654 6
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCC-cchHHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKD-KNSYRWK 322 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn-~~s~~~~ 322 (520)
.++..++|........ + ...+|+|+|++.+...... ....-.++++||+||+|.+.. ..+....
T Consensus 96 ~~v~~~~G~~~~~~~~-~---------~~~~Iiv~Tpe~l~~~~~~-----~~~~l~~~~~vIiDE~H~l~~~~r~~~~~ 160 (720)
T 2zj8_A 96 LRVAMATGDYDSKDEW-L---------GKYDIIIATAEKFDSLLRH-----GSSWIKDVKILVADEIHLIGSRDRGATLE 160 (720)
T ss_dssp CCEEEECSCSSCCCGG-G---------GGCSEEEECHHHHHHHHHH-----TCTTGGGEEEEEEETGGGGGCTTTHHHHH
T ss_pred CEEEEecCCCCccccc-c---------CCCCEEEECHHHHHHHHHc-----ChhhhhcCCEEEEECCcccCCCcccHHHH
Confidence 7888888864432211 1 1469999999998664321 111123578999999999864 2333333
Q ss_pred HHHHHhhhcCcEEEEeccCCCCCHHHHHH
Q 039292 323 NLMSVARNANQRLMLTGTPLQNDLHELWS 351 (520)
Q Consensus 323 ~l~~l~~~~~~rl~LTgTPi~n~~~el~~ 351 (520)
.+........+.++||||+- +..++..
T Consensus 161 ~ll~~l~~~~~ii~lSATl~--n~~~~~~ 187 (720)
T 2zj8_A 161 VILAHMLGKAQIIGLSATIG--NPEELAE 187 (720)
T ss_dssp HHHHHHBTTBEEEEEECCCS--CHHHHHH
T ss_pred HHHHHhhcCCeEEEEcCCcC--CHHHHHH
Confidence 33332213567899999984 2455544
No 58
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.31 E-value=1.3e-11 Score=137.62 Aligned_cols=161 Identities=21% Similarity=0.247 Sum_probs=107.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHH-HHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcC-C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLM-LLKHLNNDPGPHLIVCPAS-VLENWERELKKWCP-S 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~-~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~ 243 (520)
.|+|+|.+++..++. .+ ..+|++.+||+|||+++..++. .+.. .++.+||++|.. +..+|.+++.++.+ +
T Consensus 30 ~l~~~Q~~~i~~~~~---~~-~~~lv~apTGsGKT~~~~l~il~~~~~---~~~~il~i~P~r~La~q~~~~~~~~~~~g 102 (715)
T 2va8_A 30 KLNPPQTEAVKKGLL---EG-NRLLLTSPTGSGKTLIAEMGIISFLLK---NGGKAIYVTPLRALTNEKYLTFKDWELIG 102 (715)
T ss_dssp BCCHHHHHHHHTTTT---TT-CCEEEECCTTSCHHHHHHHHHHHHHHH---SCSEEEEECSCHHHHHHHHHHHGGGGGGT
T ss_pred CCCHHHHHHHHHHhc---CC-CcEEEEcCCCCcHHHHHHHHHHHHHHH---CCCeEEEEeCcHHHHHHHHHHHHHhhcCC
Confidence 799999999987331 23 4579999999999999855543 3322 357899999976 77889999966543 6
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc-chHHHH
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK-NSYRWK 322 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~-~s~~~~ 322 (520)
..+..+.|....... .+ ...+|+|+|++.+....... ...-.++++||+||+|.+.+. ......
T Consensus 103 ~~v~~~~G~~~~~~~-~~---------~~~~Iiv~Tpe~l~~~~~~~-----~~~l~~~~~vIiDE~H~l~~~~~~~~l~ 167 (715)
T 2va8_A 103 FKVAMTSGDYDTDDA-WL---------KNYDIIITTYEKLDSLWRHR-----PEWLNEVNYFVLDELHYLNDPERGPVVE 167 (715)
T ss_dssp CCEEECCSCSSSCCG-GG---------GGCSEEEECHHHHHHHHHHC-----CGGGGGEEEEEECSGGGGGCTTTHHHHH
T ss_pred CEEEEEeCCCCCchh-hc---------CCCCEEEEcHHHHHHHHhCC-----hhHhhccCEEEEechhhcCCcccchHHH
Confidence 778877776433221 11 13699999999987643221 111235789999999998642 222233
Q ss_pred H-HHHHhhhcCcEEEEeccCCCCCHHHHHHHH
Q 039292 323 N-LMSVARNANQRLMLTGTPLQNDLHELWSLL 353 (520)
Q Consensus 323 ~-l~~l~~~~~~rl~LTgTPi~n~~~el~~ll 353 (520)
. +..+ ...+.++|||||- +..++...+
T Consensus 168 ~i~~~~--~~~~ii~lSATl~--n~~~~~~~l 195 (715)
T 2va8_A 168 SVTIRA--KRRNLLALSATIS--NYKQIAKWL 195 (715)
T ss_dssp HHHHHH--HTSEEEEEESCCT--THHHHHHHH
T ss_pred HHHHhc--ccCcEEEEcCCCC--CHHHHHHHh
Confidence 3 3333 4678899999995 245554433
No 59
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.31 E-value=2.8e-11 Score=139.83 Aligned_cols=163 Identities=13% Similarity=0.237 Sum_probs=111.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhc-CCC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWC-PSF 244 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~-p~~ 244 (520)
.+.|+|..++..++ .| ..+|+..+||+|||+.++..+.... ..+..+|||+|+ .|..|+.+.|.++. .++
T Consensus 78 ~pt~iQ~~ai~~il----~g-~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i 149 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIV----QG-KSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLADEKV 149 (1104)
T ss_dssp CCCHHHHHHHHHHT----TT-CCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHTTSCTTS
T ss_pred CCCHHHHHHHHHHH----cC-CCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHHhhCCCC
Confidence 58899999998887 34 4579999999999995554443332 456789999996 46788999999976 456
Q ss_pred eEEEecCCCchhh-hHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc------
Q 039292 245 SVLQYHGAGRTAY-SRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN------ 317 (520)
Q Consensus 245 ~v~~~~g~~~~~~-~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~------ 317 (520)
++..++|...... ...+..+... ..+|+|+|++.+..+. ..+...++++||+||||++....
T Consensus 150 ~v~~l~Gg~~~~er~~~~~~l~~g----~~~IlV~Tp~rL~~~l-------~~l~~~~l~~lViDEaH~l~~~~r~~Dr~ 218 (1104)
T 4ddu_A 150 KIFGFYSSMKKEEKEKFEKSFEED----DYHILVFSTQFVSKNR-------EKLSQKRFDFVFVDDVDAVLKASRNIDTL 218 (1104)
T ss_dssp CEEEECTTCCTTHHHHHHHHHHTS----CCSEEEEEHHHHHHSH-------HHHHTSCCSEEEESCHHHHTTSSHHHHHH
T ss_pred eEEEEeCCCCHHHHHHHHHHHhCC----CCCEEEECHHHHHHHH-------HhhcccCcCEEEEeCCCccccccccchhh
Confidence 8888887754422 2223333221 3699999999997743 23556689999999999864311
Q ss_pred -------hHHHHHHHHHhh-----------hcCcEEEEeccCCCCCHHH
Q 039292 318 -------SYRWKNLMSVAR-----------NANQRLMLTGTPLQNDLHE 348 (520)
Q Consensus 318 -------s~~~~~l~~l~~-----------~~~~rl~LTgTPi~n~~~e 348 (520)
....+.+..... ...+.+++||||....+..
T Consensus 219 L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~ 267 (1104)
T 4ddu_A 219 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP 267 (1104)
T ss_dssp HHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTT
T ss_pred hHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHH
Confidence 110222222222 3567899999987776553
No 60
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.30 E-value=1.1e-11 Score=137.79 Aligned_cols=160 Identities=19% Similarity=0.179 Sum_probs=107.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcC-CC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCP-SF 244 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p-~~ 244 (520)
.|+|+|.+++..+. .+ ..+|++.+||+|||+++...+..... .++++|||+|.. +..+|.+++.++.+ +.
T Consensus 25 ~l~~~Q~~~i~~i~----~~-~~~lv~apTGsGKT~~~~l~il~~~~---~~~~~l~i~P~r~La~q~~~~~~~~~~~g~ 96 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----SG-KNLLLAMPTAAGKTLLAEMAMVREAI---KGGKSLYVVPLRALAGEKYESFKKWEKIGL 96 (702)
T ss_dssp CCCCCCHHHHHHHT----TC-SCEEEECSSHHHHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHTTTTTTTC
T ss_pred CCCHHHHHHHHHHh----CC-CcEEEEcCCccHHHHHHHHHHHHHHH---hCCcEEEEeCcHHHHHHHHHHHHHHHhcCC
Confidence 68999999999854 34 46799999999999988555433322 257899999976 77889999976654 57
Q ss_pred eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCc-chHHHHH
Q 039292 245 SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDK-NSYRWKN 323 (520)
Q Consensus 245 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~-~s~~~~~ 323 (520)
++..+.|....... .....+|+|+|++.+........ ..-..+++||+||+|.+.+. .+.....
T Consensus 97 ~v~~~~G~~~~~~~----------~~~~~~Iiv~Tpe~l~~~l~~~~-----~~l~~~~~vIiDE~H~l~~~~r~~~~~~ 161 (702)
T 2p6r_A 97 RIGISTGDYESRDE----------HLGDCDIIVTTSEKADSLIRNRA-----SWIKAVSCLVVDEIHLLDSEKRGATLEI 161 (702)
T ss_dssp CEEEECSSCBCCSS----------CSTTCSEEEEEHHHHHHHHHTTC-----SGGGGCCEEEETTGGGGGCTTTHHHHHH
T ss_pred EEEEEeCCCCcchh----------hccCCCEEEECHHHHHHHHHcCh-----hHHhhcCEEEEeeeeecCCCCcccHHHH
Confidence 78888886533211 11257999999999876432211 11235789999999998652 2222222
Q ss_pred H-HHHh--hhcCcEEEEeccCCCCCHHHHHH
Q 039292 324 L-MSVA--RNANQRLMLTGTPLQNDLHELWS 351 (520)
Q Consensus 324 l-~~l~--~~~~~rl~LTgTPi~n~~~el~~ 351 (520)
+ ..+. ....+.++||||+- +..++..
T Consensus 162 ll~~l~~~~~~~~ii~lSATl~--n~~~~~~ 190 (702)
T 2p6r_A 162 LVTKMRRMNKALRVIGLSATAP--NVTEIAE 190 (702)
T ss_dssp HHHHHHHHCTTCEEEEEECCCT--THHHHHH
T ss_pred HHHHHHhcCcCceEEEECCCcC--CHHHHHH
Confidence 2 2221 13567899999985 3555543
No 61
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.02 E-value=1.2e-09 Score=126.07 Aligned_cols=153 Identities=14% Similarity=0.226 Sum_probs=103.8
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCC--C
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPS--F 244 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~--~ 244 (520)
+ |+|..++..++ .| +.+|+..+||+|||+.++.++..+. ..+..+|||+|+. +..|+.+.+.+++.. +
T Consensus 58 p-~iQ~~ai~~il----~g-~dvlv~apTGSGKTl~~lp~l~~~~---~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i 128 (1054)
T 1gku_B 58 R-AIQKMWAKRIL----RK-ESFAATAPTGVGKTSFGLAMSLFLA---LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGV 128 (1054)
T ss_dssp C-HHHHHHHHHHH----TT-CCEECCCCBTSCSHHHHHHHHHHHH---TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCC
T ss_pred H-HHHHHHHHHHH----hC-CCEEEEcCCCCCHHHHHHHHHHHHh---hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCC
Confidence 7 99999998887 34 4689999999999975555444432 2457899999975 568899999988764 3
Q ss_pred ----eEEEecCCCchhhhH-HHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchH
Q 039292 245 ----SVLQYHGAGRTAYSR-ELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSY 319 (520)
Q Consensus 245 ----~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~ 319 (520)
.+..++|........ ....+.. .+|+|+|++.+..+... +. .+++||+||||++.+....
T Consensus 129 ~~~~~v~~~~Gg~~~~~~~~~~~~l~~------~~IlV~TP~~L~~~l~~-------L~--~l~~lViDEah~~l~~~~~ 193 (1054)
T 1gku_B 129 GTENLIGYYHGRIPKREKENFMQNLRN------FKIVITTTQFLSKHYRE-------LG--HFDFIFVDDVDAILKASKN 193 (1054)
T ss_dssp SGGGSEEECCSSCCSHHHHHHHHSGGG------CSEEEEEHHHHHHCSTT-------SC--CCSEEEESCHHHHHTSTHH
T ss_pred CccceEEEEeCCCChhhHHHHHhhccC------CCEEEEcHHHHHHHHHH-------hc--cCCEEEEeChhhhhhcccc
Confidence 667777765443321 1221111 59999999999875421 22 6889999999998763333
Q ss_pred HHHHHHHHh----------hhcCcEEEEeccCCCC
Q 039292 320 RWKNLMSVA----------RNANQRLMLTGTPLQN 344 (520)
Q Consensus 320 ~~~~l~~l~----------~~~~~rl~LTgTPi~n 344 (520)
....+..+. ......+++|+|+-..
T Consensus 194 ~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~ 228 (1054)
T 1gku_B 194 VDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK 228 (1054)
T ss_dssp HHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC
T ss_pred HHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc
Confidence 333333331 1234578888887765
No 62
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.95 E-value=3.8e-10 Score=110.50 Aligned_cols=75 Identities=19% Similarity=0.254 Sum_probs=45.8
Q ss_pred hhheeHhHHhhhcCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhcc
Q 039292 391 ILRRLKSDVMQQLVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIAN 470 (520)
Q Consensus 391 ~lRR~k~~v~~~LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicn 470 (520)
-+||+|++|..+||+|.+++++|+||+.|+++|+.+...+...+. .... ......+++.+++|||+||
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~-------~~~~-----~~~~~~~l~~l~~Lrq~~~ 80 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNID-------SVTG-----IKRKGMILSTLLKLKQIVD 80 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHHTT-------TCCH-----HHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHH-------hccc-----cchHHHHHHHHHHHHHHcC
Confidence 479999999999999999999999999999999999876544321 0000 0123468899999999999
Q ss_pred Ccccccc
Q 039292 471 HPLLVRR 477 (520)
Q Consensus 471 HP~L~~~ 477 (520)
||.|+..
T Consensus 81 hP~l~~~ 87 (271)
T 1z5z_A 81 HPALLKG 87 (271)
T ss_dssp CTHHHHC
T ss_pred CHHHhcC
Confidence 9999863
No 63
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.92 E-value=1e-08 Score=123.03 Aligned_cols=167 Identities=17% Similarity=0.205 Sum_probs=104.5
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHH-HHHHHhCCCCCCEEEEeCCc-chhhHHHHHHH-hcC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYL-MLLKHLNNDPGPHLIVCPAS-VLENWERELKK-WCP 242 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l-~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~-~~p 242 (520)
..+.|.|..++..++ .+...++++.+||+|||+.+.-.+ ..+. ....+.+|+|+|.- +..+-.+++.+ |.+
T Consensus 925 ~~fnpiQ~q~~~~l~----~~~~nvlv~APTGSGKTliaelail~~l~--~~~~~kavyi~P~raLa~q~~~~~~~~f~~ 998 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVY----NSDDNVFVGAPTGSGKTICAEFAILRMLL--QSSEGRCVYITPMEALAEQVYMDWYEKFQD 998 (1724)
T ss_dssp SBCCHHHHHHHHHHH----SCCSCEEEECCTTSCCHHHHHHHHHHHHH--HCTTCCEEEECSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHh----cCCCcEEEEeCCCCCchHHHHHHHHHHHH--hCCCCEEEEEcChHHHHHHHHHHHHHHhch
Confidence 357899999998876 333568999999999999874444 3443 23566899999964 55555555543 332
Q ss_pred --CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHH
Q 039292 243 --SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYR 320 (520)
Q Consensus 243 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~ 320 (520)
+.+|..+.|....... .+. ..+|+|+|++.+........ ....+ ....+||+||+|.+.......
T Consensus 999 ~~g~~V~~ltGd~~~~~~-~~~---------~~~IiV~TPEkld~llr~~~-~~~~l--~~v~lvViDE~H~l~d~rg~~ 1065 (1724)
T 4f92_B 999 RLNKKVVLLTGETSTDLK-LLG---------KGNIIISTPEKWDILSRRWK-QRKNV--QNINLFVVDEVHLIGGENGPV 1065 (1724)
T ss_dssp TSCCCEEECCSCHHHHHH-HHH---------HCSEEEECHHHHHHHHTTTT-TCHHH--HSCSEEEECCGGGGGSTTHHH
T ss_pred hcCCEEEEEECCCCcchh-hcC---------CCCEEEECHHHHHHHHhCcc-ccccc--ceeeEEEeechhhcCCCCCcc
Confidence 5678888886432211 111 25999999999855432211 11222 257899999999997644333
Q ss_pred HHHHH-HH---h---hhcCcEEEEeccCCCCCHHHHHHHH
Q 039292 321 WKNLM-SV---A---RNANQRLMLTGTPLQNDLHELWSLL 353 (520)
Q Consensus 321 ~~~l~-~l---~---~~~~~rl~LTgTPi~n~~~el~~ll 353 (520)
+..+. .+ . ....+.++||||- .|..++-..+
T Consensus 1066 le~il~rl~~i~~~~~~~~riI~lSATl--~N~~dla~WL 1103 (1724)
T 4f92_B 1066 LEVICSRMRYISSQIERPIRIVALSSSL--SNAKDVAHWL 1103 (1724)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEEEESCB--TTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEeCCC--CCHHHHHHHh
Confidence 33222 11 1 1235678899995 3566665433
No 64
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.88 E-value=6.7e-09 Score=99.27 Aligned_cols=155 Identities=14% Similarity=0.070 Sum_probs=89.2
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCC--CCCEEEEeCCcch-hhHHHHHHHhcCC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNND--PGPHLIVCPASVL-ENWERELKKWCPS 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~--~~~~LIV~P~sll-~~W~~E~~~~~p~ 243 (520)
.++++|..++..+. .| ..+++..++|+|||.+...++.......+. ...+++++|...+ .+..+.+......
T Consensus 61 p~~~~q~~~i~~i~----~g-~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 61 PVKKFESEILEAIS----QN-SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp GGGGGHHHHHHHHH----HC-SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred ChHHHHHHHHHHHh----cC-CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 57899999998886 33 357899999999997655444332222222 3468889997654 4566666655432
Q ss_pred CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHH-H
Q 039292 244 FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRW-K 322 (520)
Q Consensus 244 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~-~ 322 (520)
. +....|.... ..........+|+|+|.+.+.+.... .-.++++||+||||+.. ...... .
T Consensus 136 ~-~~~~~g~~~~--------~~~~~~~~~~~Ivv~Tpg~l~~~l~~--------~l~~~~~lVlDEah~~~-~~~~~~~~ 197 (235)
T 3llm_A 136 E-PGKSCGYSVR--------FESILPRPHASIMFCTVGVLLRKLEA--------GIRGISHVIVDEIHERD-INTDFLLV 197 (235)
T ss_dssp C-TTSSEEEEET--------TEEECCCSSSEEEEEEHHHHHHHHHH--------CCTTCCEEEECCTTSCC-HHHHHHHH
T ss_pred c-cCceEEEeec--------hhhccCCCCCeEEEECHHHHHHHHHh--------hhcCCcEEEEECCccCC-cchHHHHH
Confidence 1 0000010000 00001112468999999998774321 23468999999999731 122111 2
Q ss_pred HHHHHhh--hcCcEEEEeccCCCC
Q 039292 323 NLMSVAR--NANQRLMLTGTPLQN 344 (520)
Q Consensus 323 ~l~~l~~--~~~~rl~LTgTPi~n 344 (520)
.+..+.. ...+.+++|||+-.+
T Consensus 198 ~l~~i~~~~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 198 VLRDVVQAYPEVRIVLMSATIDTS 221 (235)
T ss_dssp HHHHHHHHCTTSEEEEEECSSCCH
T ss_pred HHHHHHhhCCCCeEEEEecCCCHH
Confidence 2333321 345689999998544
No 65
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=98.85 E-value=1.8e-08 Score=120.91 Aligned_cols=167 Identities=15% Similarity=0.173 Sum_probs=105.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHH-HHHHHHHhC-------CCCCCEEEEeCC-cchhhHHHH
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAIT-YLMLLKHLN-------NDPGPHLIVCPA-SVLENWERE 236 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia-~l~~l~~~~-------~~~~~~LIV~P~-sll~~W~~E 236 (520)
..|.+.|..++..++ .....++++.+||+|||+.|.- ++..+.... ...+++|+|+|. .|..+-.++
T Consensus 78 ~~ln~iQs~~~~~al----~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 78 KTLNRIQSKLYRAAL----ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp SBCCHHHHHTHHHHH----TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHH
Confidence 478999999988776 2224689999999999988743 344443211 234578999996 455566677
Q ss_pred HHHhcC--CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccC
Q 039292 237 LKKWCP--SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 237 ~~~~~p--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
|.+.+. +++|..++|........ . ...+|+|||++.+....... .....+. ...+||+||+|.+.
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~~~~-~---------~~~~IlVtTpEkld~llr~~-~~~~~l~--~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLCKEE-I---------SATQIIVCTPEKWDIITRKG-GERTYTQ--LVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSCCTT-G---------GGCSEEEECHHHHHHHTTSS-TTHHHHT--TEEEEEETTGGGGG
T ss_pred HHHHHhhCCCEEEEEECCCCCCccc-c---------CCCCEEEECHHHHHHHHcCC-ccchhhc--CcCEEEEecchhcC
Confidence 765543 56788888865332111 1 14699999999886543221 1233333 47799999999996
Q ss_pred CcchHHHHHHH-H------HhhhcCcEEEEeccCCCCCHHHHHH
Q 039292 315 DKNSYRWKNLM-S------VARNANQRLMLTGTPLQNDLHELWS 351 (520)
Q Consensus 315 n~~s~~~~~l~-~------l~~~~~~rl~LTgTPi~n~~~el~~ 351 (520)
+........+. . ......++++||||- .|+.|+-.
T Consensus 221 d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~ 262 (1724)
T 4f92_B 221 DDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVAT 262 (1724)
T ss_dssp STTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHH
Confidence 54333322221 1 111345689999994 35666543
No 66
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.83 E-value=1.7e-09 Score=106.88 Aligned_cols=101 Identities=12% Similarity=-0.007 Sum_probs=62.3
Q ss_pred cCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhhhcCCChhHHHHHHHHHhhhccCcccccccCCCh
Q 039292 403 LVPKIQWVEYVTMERPQEDAYRVAIEEYRAVSRARIAKLSDADLATIVGVLPQRQISNYFVQFRKIANHPLLVRRIYSDD 482 (520)
Q Consensus 403 LP~k~e~~v~v~ms~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LRkicnHP~L~~~~~~~~ 482 (520)
-|++.|++++|+||+.|+++|+.++......+.....+..... .. ...++.+++|+||+|||||+|+...+.+.
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~-~~-----~~~sl~nli~qLRkicnHP~L~~d~~~p~ 93 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKE-DV-----ILESMKTMCLNGSLVATHPYLLIDHYMPK 93 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCC-HH-----HHHHHHHHHHHHHHHHHCGGGTCCTTCCS
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCcc-ch-----HHHHHHHHHHHHHHHcCChhhhccccCCc
Confidence 3999999999999999999999999765444444433322111 11 12368899999999999999994332211
Q ss_pred HH---HHHHHhhCCCCCccccccHHHHHHHHhc
Q 039292 483 DV---VRFAKKLHPMGAFGFECTLERVIEELKN 512 (520)
Q Consensus 483 ~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 512 (520)
.. ........ .+++...|++++..++.
T Consensus 94 ~~~~~~~~~~l~~---~SGKf~~L~~LL~~l~~ 123 (328)
T 3hgt_A 94 SLITRDVPAHLAE---NSGKFSVLRDLINLVQE 123 (328)
T ss_dssp CSCSTTHHHHHHH---TCHHHHHHHHHHHHHTT
T ss_pred cccccchhhHHHH---cCccHHHHHHHHHHHHh
Confidence 10 00111122 34455567777776654
No 67
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.77 E-value=3.7e-08 Score=102.87 Aligned_cols=131 Identities=19% Similarity=0.150 Sum_probs=76.0
Q ss_pred CceEEeCCCCCCHHHHH-HHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHh
Q 039292 188 AGAILADEMGLGKTIQA-ITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLA 265 (520)
Q Consensus 188 ~g~ILademGlGKTi~a-ia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~ 265 (520)
+.+|+..+||+|||+++ ++++..+.. .+..+||++|+.. ..|+.+.|. +..+..+.|....
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~---~g~~~lvl~Pt~~La~Q~~~~~~----~~~v~~~~~~~~~---------- 65 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVK---KRLRTVILAPTRVVASEMYEALR----GEPIRYMTPAVQS---------- 65 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT----TSCEEEC----------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEECcHHHHHHHHHHHhC----CCeEEEEecCccc----------
Confidence 35799999999999987 444433322 3468999999765 456665553 4555544443111
Q ss_pred hcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch-HHHHHHHHHh-hhcCcEEEEeccCCC
Q 039292 266 KAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS-YRWKNLMSVA-RNANQRLMLTGTPLQ 343 (520)
Q Consensus 266 ~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s-~~~~~l~~l~-~~~~~rl~LTgTPi~ 343 (520)
...+...+.+++.+.+.... .......++++||+||+|++ +... .....+..+. ....+.++|||||..
T Consensus 66 --~~~~~~~~~~~~~~~l~~~l------~~~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~ 136 (431)
T 2v6i_A 66 --ERTGNEIVDFMCHSTFTMKL------LQGVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPG 136 (431)
T ss_dssp -----CCCSEEEEEHHHHHHHH------HHTCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTT
T ss_pred --cCCCCceEEEEchHHHHHHH------hcCccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCc
Confidence 00112355566777664321 11112346899999999998 3322 2223333332 235778999999985
Q ss_pred C
Q 039292 344 N 344 (520)
Q Consensus 344 n 344 (520)
.
T Consensus 137 ~ 137 (431)
T 2v6i_A 137 T 137 (431)
T ss_dssp C
T ss_pred c
Confidence 3
No 68
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.73 E-value=3.4e-08 Score=106.46 Aligned_cols=78 Identities=18% Similarity=0.087 Sum_probs=58.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcC--C
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCP--S 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p--~ 243 (520)
.+||+|.+.+..+......+ +.+|+...||+|||+..+.-+.. ...++||++|+. +..||.+++..+.. .
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~-~~~~~~a~TGtGKT~~~l~p~l~------~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNN-FLVALNAPTGSGKTLFSLLVSLE------VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTT-CEEEEECCTTSSHHHHHHHHHHH------HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCHHHHHHHHHHHHHHHcC-CcEEEECCCCccHHHHHHHHHHh------CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 58999999988777666666 45788899999999876544432 356899999965 56789999987642 4
Q ss_pred CeEEEecC
Q 039292 244 FSVLQYHG 251 (520)
Q Consensus 244 ~~v~~~~g 251 (520)
+++.++.|
T Consensus 76 ~~~~~l~g 83 (551)
T 3crv_A 76 ITFSFLVG 83 (551)
T ss_dssp CCEEECCC
T ss_pred ccEEEEcc
Confidence 66666655
No 69
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=98.71 E-value=4.6e-08 Score=105.14 Aligned_cols=76 Identities=20% Similarity=0.185 Sum_probs=52.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC-cchhhHHHHHHHhcCCCe
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA-SVLENWERELKKWCPSFS 245 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~-sll~~W~~E~~~~~p~~~ 245 (520)
.+||+|...+..+......+ +.+|+...||+|||+..+..+ +. ..+++||++|+ .+..||.+++.++ ..+
T Consensus 7 ~~r~~Q~~~~~~v~~~~~~~-~~~~~~a~TGtGKT~~~l~~~--~~----~~~~~~~~~~t~~l~~q~~~~~~~l--~~~ 77 (540)
T 2vl7_A 7 QLRQWQAEKLGEAINALKHG-KTLLLNAKPGLGKTVFVEVLG--MQ----LKKKVLIFTRTHSQLDSIYKNAKLL--GLK 77 (540)
T ss_dssp --CCHHHHHHHHHHHHHHTT-CEEEEECCTTSCHHHHHHHHH--HH----HTCEEEEEESCHHHHHHHHHHHGGG--TCC
T ss_pred CCCHHHHHHHHHHHHHHHcC-CCEEEEcCCCCcHHHHHHHHH--Hh----CCCcEEEEcCCHHHHHHHHHHHHhc--CCc
Confidence 68999999988776665566 467899999999997654433 22 24789999996 4578899998875 334
Q ss_pred EEEecC
Q 039292 246 VLQYHG 251 (520)
Q Consensus 246 v~~~~g 251 (520)
+.+..|
T Consensus 78 ~~~l~g 83 (540)
T 2vl7_A 78 TGFLIG 83 (540)
T ss_dssp EEEC--
T ss_pred EEEecC
Confidence 444443
No 70
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.64 E-value=7.7e-08 Score=104.62 Aligned_cols=127 Identities=16% Similarity=0.117 Sum_probs=79.3
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhh
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAK 266 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~ 266 (520)
..+|+..++|+|||.+....+. . .+..+||++|... ..|+.+.+.+.+. ..+....|....
T Consensus 233 ~~vlv~ApTGSGKT~a~~l~ll---~---~g~~vLVl~PTReLA~Qia~~l~~~~g-~~vg~~vG~~~~----------- 294 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKVPAAYA---A---QGYKVLVLNPSVAATLGFGAYMSKAHG-IDPNIRTGVRTI----------- 294 (666)
T ss_dssp EEEEEECCTTSCTTTHHHHHHH---H---TTCCEEEEESCHHHHHHHHHHHHHHHS-CCCEEECSSCEE-----------
T ss_pred CeEEEEeCCchhHHHHHHHHHH---H---CCCeEEEEcchHHHHHHHHHHHHHHhC-CCeeEEECcEec-----------
Confidence 3468899999999976654432 2 2458999999764 5668777776653 334444443221
Q ss_pred cCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCc--EEEEeccCCC
Q 039292 267 AGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQ--RLMLTGTPLQ 343 (520)
Q Consensus 267 ~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~--rl~LTgTPi~ 343 (520)
....+|+++|++.|... ..+...++++|||||||.+-...-.....+......... .+++||||-.
T Consensus 295 ---~~~~~IlV~TPGrLl~~--------~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~~ 362 (666)
T 3o8b_A 295 ---TTGAPVTYSTYGKFLAD--------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPG 362 (666)
T ss_dssp ---CCCCSEEEEEHHHHHHT--------TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCTT
T ss_pred ---cCCCCEEEECcHHHHhC--------CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCCc
Confidence 12569999999998531 223445689999999988742221212223333222222 5778999965
No 71
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=98.57 E-value=1.6e-07 Score=98.65 Aligned_cols=130 Identities=21% Similarity=0.237 Sum_probs=75.5
Q ss_pred ceEEeCCCCCCHHHH-HHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhh
Q 039292 189 GAILADEMGLGKTIQ-AITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAK 266 (520)
Q Consensus 189 g~ILademGlGKTi~-aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~ 266 (520)
-+|+..+||+|||++ .+.++..+.. .+..+||++|... ..|+.+++. +..+. +.......
T Consensus 21 ~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~----g~~v~-~~~~~~~~---------- 82 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAVKS---------- 82 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTCSC----------
T ss_pred eEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhc----Cceee-eeeccccc----------
Confidence 348888999999997 4444443322 3468999999754 566777663 33332 22111100
Q ss_pred cCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHH-HHH-HhhhcCcEEEEeccCCCC
Q 039292 267 AGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKN-LMS-VARNANQRLMLTGTPLQN 344 (520)
Q Consensus 267 ~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~-l~~-l~~~~~~rl~LTgTPi~n 344 (520)
...+...+.++|++.+..... ....-.++++||+||||++ +........ +.. ......+.++|||||-..
T Consensus 83 -~~~~~~~i~~~t~~~l~~~l~------~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~ 154 (451)
T 2jlq_A 83 -DHTGREIVDLMCHATFTTRLL------SSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS 154 (451)
T ss_dssp -CCCSSCCEEEEEHHHHHHHHH------HCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred -cCCCCceEEEEChHHHHHHhh------CcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCcc
Confidence 112245788889888765321 1112336899999999987 322222111 111 111356789999999653
No 72
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=98.53 E-value=1.6e-07 Score=98.95 Aligned_cols=131 Identities=16% Similarity=0.137 Sum_probs=73.9
Q ss_pred CceEEeCCCCCCHHHHH-HHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHh
Q 039292 188 AGAILADEMGLGKTIQA-ITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLA 265 (520)
Q Consensus 188 ~g~ILademGlGKTi~a-ia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~ 265 (520)
+.+|++.+||+|||+++ +.++..+.. .+..+||++|.. +..|+.+.+. +..+....+.....
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~----g~~v~~~~~~~~~~--------- 85 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKDAIQ---QRLRTAVLAPTRVVAAEMAEALR----GLPVRYQTSAVQRE--------- 85 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHHHHH---TTCCEEEEECSHHHHHHHHHHTT----TSCEEECC---------------
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEECchHHHHHHHHHHhc----CceEeEEecccccC---------
Confidence 45799999999999984 454544432 346899999976 5667877775 22222211111000
Q ss_pred hcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHH-HHHHH-hhhcCcEEEEeccCCC
Q 039292 266 KAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWK-NLMSV-ARNANQRLMLTGTPLQ 343 (520)
Q Consensus 266 ~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~-~l~~l-~~~~~~rl~LTgTPi~ 343 (520)
..+...+.+++...+...... ...-.++++||+||||+.. ..+.... .+... .....+.++|||||-.
T Consensus 86 ---~t~~~~i~~~~~~~l~~~l~~------~~~l~~~~~iViDEaH~~~-~~~~~~~~~~~~~~~~~~~~~il~SAT~~~ 155 (459)
T 2z83_A 86 ---HQGNEIVDVMCHATLTHRLMS------PNRVPNYNLFVMDEAHFTD-PASIAARGYIATKVELGEAAAIFMTATPPG 155 (459)
T ss_dssp -----CCCSEEEEEHHHHHHHHHS------CC-CCCCSEEEESSTTCCS-HHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred ---CCCCcEEEEEchHHHHHHhhc------cccccCCcEEEEECCccCC-chhhHHHHHHHHHhccCCccEEEEEcCCCc
Confidence 012335666777766442111 1123368999999999862 2221111 11111 1145678999999964
Q ss_pred C
Q 039292 344 N 344 (520)
Q Consensus 344 n 344 (520)
.
T Consensus 156 ~ 156 (459)
T 2z83_A 156 T 156 (459)
T ss_dssp C
T ss_pred c
Confidence 3
No 73
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=98.52 E-value=1.2e-07 Score=99.24 Aligned_cols=131 Identities=21% Similarity=0.217 Sum_probs=70.2
Q ss_pred CceEEeCCCCCCHHHHH-HHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHh
Q 039292 188 AGAILADEMGLGKTIQA-ITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLA 265 (520)
Q Consensus 188 ~g~ILademGlGKTi~a-ia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~ 265 (520)
+.+|+..+||+|||+++ ++++..+.. ....+||++|+. +..|+.+.+..+ .+....+.-..
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~~~---~~~~~lil~Ptr~La~Q~~~~l~~~----~v~~~~~~~~~---------- 71 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAECAR---RRLRTLVLAPTRVVLSEMKEAFHGL----DVKFHTQAFSA---------- 71 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTTS----CEEEESSCCCC----------
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHh---cCCeEEEEcchHHHHHHHHHHHhcC----CeEEeccccee----------
Confidence 45799999999999986 444443432 346899999975 456787777643 22211111000
Q ss_pred hcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHH-HHHHHHHh-hhcCcEEEEeccCCC
Q 039292 266 KAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYR-WKNLMSVA-RNANQRLMLTGTPLQ 343 (520)
Q Consensus 266 ~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~-~~~l~~l~-~~~~~rl~LTgTPi~ 343 (520)
.+ .+..-+-+++...+.... .......++++||+||+|++ +..... ...+..+. ....+.++|||||..
T Consensus 72 -v~-Tp~~l~~~l~~~~l~~~~------~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~ 142 (440)
T 1yks_A 72 -HG-SGREVIDAMCHATLTYRM------LEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATILMTATPPG 142 (440)
T ss_dssp -CC-CSSCCEEEEEHHHHHHHH------TSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTT
T ss_pred -cc-CCccceeeecccchhHhh------hCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEEEEeCCCCc
Confidence 00 001112222222222100 00011346899999999998 322211 11222222 145778999999975
Q ss_pred C
Q 039292 344 N 344 (520)
Q Consensus 344 n 344 (520)
+
T Consensus 143 ~ 143 (440)
T 1yks_A 143 T 143 (440)
T ss_dssp C
T ss_pred h
Confidence 5
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=98.52 E-value=8.7e-07 Score=97.61 Aligned_cols=146 Identities=21% Similarity=0.179 Sum_probs=91.1
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch----hhHHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL----ENWERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~~~~p 242 (520)
...|-|..|+-.|+ .| -|....||+|||+.++..+. +... .+..++||||+.-| .+|...+-+++
T Consensus 79 ~Pt~VQ~~~ip~Ll----qG---~IaeakTGeGKTLvf~Lp~~-L~aL--~G~qv~VvTPTreLA~Qdae~m~~l~~~l- 147 (997)
T 2ipc_A 79 RHFDVQLIGGAVLH----EG---KIAEMKTGEGKTLVATLAVA-LNAL--TGKGVHVVTVNDYLARRDAEWMGPVYRGL- 147 (997)
T ss_dssp CCCHHHHHHHHHHH----TT---SEEECCSTHHHHHHHHHHHH-HHHT--TCSCCEEEESSHHHHHHHHHHHHHHHHTT-
T ss_pred CCcHHHHhhccccc----CC---ceeeccCCCchHHHHHHHHH-HHHH--hCCCEEEEeCCHHHHHHHHHHHHHHHHhc-
Confidence 56789999997776 33 38899999999986543332 2222 34579999998765 33888888877
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHh-hhhcccc-chHHHHhhc---CccEEEEeCccccCCcc
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFE-RHSVQQK-DDRKILKRW---RWSCVLMDEAHALKDKN 317 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~-~~~~~~~-~~~~~l~~~---~~~~vIiDEaH~ikn~~ 317 (520)
++.+.+..|........ ... ..+|++.|.+.|. ....... .....+... .+.++|+||+|++...
T Consensus 148 GLsv~~i~Gg~~~~~r~-~ay--------~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmLiD- 217 (997)
T 2ipc_A 148 GLSVGVIQHASTPAERR-KAY--------LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSILID- 217 (997)
T ss_dssp TCCEEECCTTCCHHHHH-HHH--------TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHTTS-
T ss_pred CCeEEEEeCCCCHHHHH-HHc--------CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHHHh-
Confidence 56776666654322111 111 3699999999883 2110000 000112223 6789999999965321
Q ss_pred hHHHHHHHHHhhhcCcEEEEeccCCCCCH
Q 039292 318 SYRWKNLMSVARNANQRLMLTGTPLQNDL 346 (520)
Q Consensus 318 s~~~~~l~~l~~~~~~rl~LTgTPi~n~~ 346 (520)
.+..-+++|| |+....
T Consensus 218 ------------eartPLIISg-p~~~~~ 233 (997)
T 2ipc_A 218 ------------EARTPLIISG-PAEKAT 233 (997)
T ss_dssp ------------STTSCEEEEE-SCSSCH
T ss_pred ------------CCCCCeeeeC-CCccch
Confidence 2333488999 887763
No 75
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=98.47 E-value=1.4e-06 Score=96.07 Aligned_cols=128 Identities=15% Similarity=0.150 Sum_probs=81.3
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch----hhHHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL----ENWERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~~~~p 242 (520)
...|.|..|+-.++ .|.|....||.|||+.++.-+. +... .+..++||||+.-| .+|...+.+|+
T Consensus 111 rP~~VQ~~~ip~Ll-------~G~Iaem~TGeGKTLa~~LP~~-l~aL--~g~~v~VvTpTreLA~Qdae~m~~l~~~l- 179 (922)
T 1nkt_A 111 RPFDVQVMGAAALH-------LGNVAEMKTGEGKTLTCVLPAY-LNAL--AGNGVHIVTVNDYLAKRDSEWMGRVHRFL- 179 (922)
T ss_dssp CCCHHHHHHHHHHH-------TTEEEECCTTSCHHHHTHHHHH-HHHT--TTSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred CCCHHHHHHHHhHh-------cCCEEEecCCCccHHHHHHHHH-HHHH--hCCCeEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 56788999887776 3459999999999986543332 2111 24579999997655 44999998887
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhcccc--chHHHHhhcCccEEEEeCccccC
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQK--DDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~--~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
++++.++.|....... .... ..+|++.|.+.|..+..... .....+....+.++|||||+++.
T Consensus 180 GLsv~~i~gg~~~~~r-~~~y--------~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmL 244 (922)
T 1nkt_A 180 GLQVGVILATMTPDER-RVAY--------NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSIL 244 (922)
T ss_dssp TCCEEECCTTCCHHHH-HHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHH
T ss_pred CCeEEEEeCCCCHHHH-HHhc--------CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHH
Confidence 6777766654432211 1111 25999999988731110000 00112334468999999999763
No 76
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=98.44 E-value=5.8e-07 Score=97.87 Aligned_cols=131 Identities=20% Similarity=0.216 Sum_probs=77.9
Q ss_pred CceEEeCCCCCCHHHHH-HHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHh
Q 039292 188 AGAILADEMGLGKTIQA-ITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLA 265 (520)
Q Consensus 188 ~g~ILademGlGKTi~a-ia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~ 265 (520)
+.+|+..+||+|||++. +.++..+.. ....+||++|... ..|+.+.|. +..+. |.+..-.
T Consensus 187 ~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa~Qi~~~l~----~~~v~-~~~~~l~---------- 248 (618)
T 2whx_A 187 RLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVAAEMEEALR----GLPIR-YQTPAVK---------- 248 (618)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT----TSCEE-ECCTTSS----------
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHHHHHHHHhc----CCcee-Eecccce----------
Confidence 46799999999999984 556655533 3468999999754 566776664 23332 3332100
Q ss_pred hcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcch-HHHHHHHHHh-hhcCcEEEEeccCCC
Q 039292 266 KAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNS-YRWKNLMSVA-RNANQRLMLTGTPLQ 343 (520)
Q Consensus 266 ~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s-~~~~~l~~l~-~~~~~rl~LTgTPi~ 343 (520)
....+...+.+++++.+..... ......++++||+||||++ +... .....+.... ....+.+++||||-.
T Consensus 249 -~~~tp~~~i~~~t~~~l~~~l~------~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~ 320 (618)
T 2whx_A 249 -SDHTGREIVDLMCHATFTTRLL------SSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPG 320 (618)
T ss_dssp -CCCCSSSCEEEEEHHHHHHHHH------HCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTT
T ss_pred -eccCCCceEEEEChHHHHHHHh------ccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCch
Confidence 0112234666777777654211 1112346899999999998 3222 1222222222 245678999999964
Q ss_pred C
Q 039292 344 N 344 (520)
Q Consensus 344 n 344 (520)
.
T Consensus 321 ~ 321 (618)
T 2whx_A 321 S 321 (618)
T ss_dssp C
T ss_pred h
Confidence 4
No 77
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=98.37 E-value=2.6e-06 Score=93.76 Aligned_cols=128 Identities=15% Similarity=0.031 Sum_probs=80.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch----hhHHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL----ENWERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll----~~W~~E~~~~~p 242 (520)
..+|.|..|+-.++ . |-|.-..||+|||+.++.-+... . ..+..++||||+.-| .+|...+.+++
T Consensus 74 ~p~~VQ~~~i~~ll----~---G~Iaem~TGsGKTlaf~LP~l~~-~--l~g~~vlVltPTreLA~Q~~e~~~~l~~~l- 142 (853)
T 2fsf_A 74 RHFDVQLLGGMVLN----E---RCIAEMRTGEGKTLTATLPAYLN-A--LTGKGVHVVTVNDYLAQRDAENNRPLFEFL- 142 (853)
T ss_dssp CCCHHHHHHHHHHH----S---SEEEECCTTSCHHHHHHHHHHHH-H--TTSSCCEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred CCChHHHhhccccc----C---CeeeeecCCchHHHHHHHHHHHH-H--HcCCcEEEEcCCHHHHHHHHHHHHHHHHhc-
Confidence 56789999997776 3 34888999999998654333211 1 134579999998755 34888888887
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHh-hhhccc-cchHHHHhhcCccEEEEeCccccC
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFE-RHSVQQ-KDDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~-~~~~~~-~~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
++++.++.|...... +.+.. ..+|++.|++.|. ...... ......+......++|+||||++.
T Consensus 143 gl~v~~i~GG~~~~~-r~~~~--------~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 143 GLTVGINLPGMPAPA-KREAY--------AADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp TCCEEECCTTCCHHH-HHHHH--------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred CCeEEEEeCCCCHHH-HHHhc--------CCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 567766665543221 11111 2599999999873 111000 000112344578899999999764
No 78
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=98.36 E-value=5.3e-07 Score=99.00 Aligned_cols=152 Identities=15% Similarity=0.110 Sum_probs=79.7
Q ss_pred CCcHHHH-----HHHHHHH--HHHhcCCCceEEeCCCCCCHHHHH-HHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHH
Q 039292 167 VLKPYQL-----VGVNFLL--LLYRKGIAGAILADEMGLGKTIQA-ITYLMLLKHLNNDPGPHLIVCPAS-VLENWEREL 237 (520)
Q Consensus 167 ~Lr~~Q~-----~gv~~l~--~~~~~~~~g~ILademGlGKTi~a-ia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~ 237 (520)
.+.|.|. .+|..++ .....+ ..+|+..++|+|||+++ ++++..+.. ....+||++|+. |..|+.+.+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g-~dvlv~apTGSGKTl~~ll~il~~l~~---~~~~~lilaPTr~La~Q~~~~l 290 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKR-QLTVLDLHPGAGKTRRILPQIIKDAIQ---KRLRTAVLAPTRVVAAEMAEAL 290 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTT-CEEEECCCTTTTTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHT
T ss_pred ccCceeeccccccchHHHhhHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEccHHHHHHHHHHHH
Confidence 4455566 5554333 111233 46799999999999985 444444332 346899999976 556788777
Q ss_pred HHhcCCCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc
Q 039292 238 KKWCPSFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN 317 (520)
Q Consensus 238 ~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~ 317 (520)
..+. +. +....-. . ...+..-+-+++...+.... .......++++||+||||++....
T Consensus 291 ~~~~----i~-~~~~~l~----------~-v~tp~~ll~~l~~~~l~~~l------~~~~~l~~l~lvViDEaH~~~~~~ 348 (673)
T 2wv9_A 291 RGLP----VR-YLTPAVQ----------R-EHSGNEIVDVMCHATLTHRL------MSPLRVPNYNLFVMDEAHFTDPAS 348 (673)
T ss_dssp TTSC----CE-ECCC-------------C-CCCSCCCEEEEEHHHHHHHH------HSSSCCCCCSEEEEESTTCCCHHH
T ss_pred hcCC----ee-eeccccc----------c-cCCHHHHHHHHHhhhhHHHH------hcccccccceEEEEeCCcccCccH
Confidence 6542 11 1111000 0 00112233344444443211 000123468999999999982111
Q ss_pred hHHHHHHHHHhh-hcCcEEEEeccCCCC
Q 039292 318 SYRWKNLMSVAR-NANQRLMLTGTPLQN 344 (520)
Q Consensus 318 s~~~~~l~~l~~-~~~~rl~LTgTPi~n 344 (520)
......+..+.. ...+.++|||||...
T Consensus 349 ~~~~~~l~~~~~~~~~~vl~~SAT~~~~ 376 (673)
T 2wv9_A 349 IAARGYIATRVEAGEAAAIFMTATPPGT 376 (673)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECSSCTTC
T ss_pred HHHHHHHHHhccccCCcEEEEcCCCChh
Confidence 112222333322 457889999999754
No 79
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.28 E-value=3.7e-06 Score=92.76 Aligned_cols=125 Identities=14% Similarity=0.096 Sum_probs=81.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchh----hHHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLE----NWERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~----~W~~E~~~~~p 242 (520)
...|.|..|+-.++ .| -|....||.|||+.++.-+. +... .+..++||||+.-|. .|...+.+|+
T Consensus 83 ~pt~VQ~~~ip~ll----~G---~Iaea~TGeGKTlaf~LP~~-l~aL--~g~~vlVltptreLA~qd~e~~~~l~~~l- 151 (844)
T 1tf5_A 83 FPFKVQLMGGVALH----DG---NIAEMKTGEGKTLTSTLPVY-LNAL--TGKGVHVVTVNEYLASRDAEQMGKIFEFL- 151 (844)
T ss_dssp CCCHHHHHHHHHHH----TT---SEEECCTTSCHHHHHHHHHH-HHHT--TSSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred CCcHHHHHhhHHHh----CC---CEEEccCCcHHHHHHHHHHH-HHHH--cCCCEEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 56789999998776 33 38899999999986544332 2111 345799999976553 4888888887
Q ss_pred CCeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhH-----hhhhccccchHHHHhhcCccEEEEeCccccC
Q 039292 243 SFSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLF-----ERHSVQQKDDRKILKRWRWSCVLMDEAHALK 314 (520)
Q Consensus 243 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l-----~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ik 314 (520)
++++.++.|....... .... ..+|++.|.+.| +.+... ....+....+.++|+|||+++.
T Consensus 152 gl~v~~i~gg~~~~~r-~~~~--------~~dIv~gTpgrlgfD~L~D~m~~---~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 152 GLTVGLNLNSMSKDEK-REAY--------AADITYSTNNELGFDYLRDNMVL---YKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp TCCEEECCTTSCHHHH-HHHH--------HSSEEEEEHHHHHHHHHHHTTCS---SGGGCCCCCCCEEEEETHHHHH
T ss_pred CCeEEEEeCCCCHHHH-HHhc--------CCCEEEECchhhhHHHHHHhhhc---chhhhcccCCCEEEECchhhhh
Confidence 6777666554332211 1111 259999999998 332211 0122334568899999999873
No 80
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.23 E-value=1.4e-06 Score=97.28 Aligned_cols=150 Identities=15% Similarity=0.123 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCCCeEEE
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPSFSVLQ 248 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v~~ 248 (520)
+.|..++..++. .+ .-+++..++|+|||.+.-.++.......+.+..++|++|... ..++.+.+..... ..+..
T Consensus 96 ~~q~~~i~~~l~---~~-~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~-~~v~~ 170 (773)
T 2xau_A 96 HAQRDEFLKLYQ---NN-QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMD-VKLGE 170 (773)
T ss_dssp GGGHHHHHHHHH---HC-SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTT-CCBTT
T ss_pred HHHHHHHHHHHh---CC-CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhC-Cchhh
Confidence 456666655542 22 347899999999999544443222111112345899999755 4567666665542 22111
Q ss_pred ecCCC-chhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccc-cCCcchHHHHHHHH
Q 039292 249 YHGAG-RTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHA-LKDKNSYRWKNLMS 326 (520)
Q Consensus 249 ~~g~~-~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~-ikn~~s~~~~~l~~ 326 (520)
..|.. +.. ........|+++|.+.+.+.... ...-.++++||+||+|. .-+... ....+..
T Consensus 171 ~vG~~i~~~----------~~~~~~~~I~v~T~G~l~r~l~~------~~~l~~~~~lIlDEah~R~ld~d~-~~~~l~~ 233 (773)
T 2xau_A 171 EVGYSIRFE----------NKTSNKTILKYMTDGMLLREAME------DHDLSRYSCIILDEAHERTLATDI-LMGLLKQ 233 (773)
T ss_dssp TEEEEETTE----------EECCTTCSEEEEEHHHHHHHHHH------STTCTTEEEEEECSGGGCCHHHHH-HHHHHHH
T ss_pred eecceeccc----------cccCCCCCEEEECHHHHHHHHhh------CccccCCCEEEecCccccccchHH-HHHHHHH
Confidence 11110 000 00112468999999998764321 12234689999999995 322111 1122222
Q ss_pred Hhh--hcCcEEEEeccC
Q 039292 327 VAR--NANQRLMLTGTP 341 (520)
Q Consensus 327 l~~--~~~~rl~LTgTP 341 (520)
+.. ...+.+++|||+
T Consensus 234 l~~~~~~~~iIl~SAT~ 250 (773)
T 2xau_A 234 VVKRRPDLKIIIMSATL 250 (773)
T ss_dssp HHHHCTTCEEEEEESCS
T ss_pred HHHhCCCceEEEEeccc
Confidence 211 345689999999
No 81
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.13 E-value=6.7e-06 Score=89.57 Aligned_cols=82 Identities=22% Similarity=0.280 Sum_probs=56.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhc--CC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWC--PS 243 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~--p~ 243 (520)
..||+|.+.+..+......+ +.+|+..+||+|||+..+..+..... ....+++|++|+. +..|+.+++.++. ..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~-~~~~~~apTGtGKT~a~l~p~l~~~~--~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKS-YGVALESPTGSGKTIMALKSALQYSS--ERKLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHS-SEEEEECCTTSCHHHHHHHHHHHHHH--HHTCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHcC-CCEEEECCCCCCHHHHHHHHHHHhhh--hcCCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 46999999998777666666 45799999999999876544332211 1346899999964 5678999987764 24
Q ss_pred CeEEEecC
Q 039292 244 FSVLQYHG 251 (520)
Q Consensus 244 ~~v~~~~g 251 (520)
+++..+.|
T Consensus 80 ~~~~~l~g 87 (620)
T 4a15_A 80 IRAIPMQG 87 (620)
T ss_dssp CCEEECCC
T ss_pred eEEEEEEC
Confidence 55555444
No 82
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.06 E-value=8.7e-06 Score=89.24 Aligned_cols=122 Identities=10% Similarity=0.033 Sum_probs=75.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhh
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAK 266 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~ 266 (520)
+.+|+..+||+|||..++..+. . . +..+|++|... ..|+.+.+... +..+..+.|......
T Consensus 156 k~vlv~apTGSGKT~~al~~l~---~-~---~~gl~l~PtR~LA~Qi~~~l~~~--g~~v~lltG~~~~iv--------- 217 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAIQKYF---S-A---KSGVYCGPLKLLAHEIFEKSNAA--GVPCDLVTGEERVTV--------- 217 (677)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH---H-S---SSEEEEESSHHHHHHHHHHHHHT--TCCEEEECSSCEECC---------
T ss_pred CEEEEEcCCCCCHHHHHHHHHH---h-c---CCeEEEeCHHHHHHHHHHHHHhc--CCcEEEEECCeeEEe---------
Confidence 3578999999999996654442 2 1 33499999755 56688888775 556777777643310
Q ss_pred cCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcc--hHHHHHHHHHhhhcCcEEEEecc
Q 039292 267 AGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKN--SYRWKNLMSVARNANQRLMLTGT 340 (520)
Q Consensus 267 ~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~--s~~~~~l~~l~~~~~~rl~LTgT 340 (520)
.......+++++|.+.+.. ...+++|||||+|++.+.. ......+..+.....+.+++|+|
T Consensus 218 ~TpGr~~~il~~T~e~~~l-------------~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT 280 (677)
T 3rc3_A 218 QPNGKQASHVSCTVEMCSV-------------TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAA 280 (677)
T ss_dssp STTCCCCSEEEEEGGGCCS-------------SSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGG
T ss_pred cCCCcccceeEecHhHhhh-------------cccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccch
Confidence 0000125788888765531 2457999999999985432 22233444432123445667777
No 83
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.95 E-value=5.2e-05 Score=83.07 Aligned_cols=72 Identities=24% Similarity=0.229 Sum_probs=54.9
Q ss_pred CCccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhc
Q 039292 163 DFQPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWC 241 (520)
Q Consensus 163 ~~~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~ 241 (520)
.+...|-+.|..||...+.. .. =+|+..++|+|||.+.+.++..+.. .+.++||++|++. +.+....+....
T Consensus 185 ~~~~~LN~~Q~~AV~~al~~--~~--~~lI~GPPGTGKT~ti~~~I~~l~~---~~~~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 185 FFNTCLDTSQKEAVLFALSQ--KE--LAIIHGPPGTGKTTTVVEIILQAVK---QGLKVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp CSSTTCCHHHHHHHHHHHHC--SS--EEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHhcC--CC--ceEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEcCchHHHHHHHHHHHhcC
Confidence 34568999999999987731 12 3689999999999999988887755 3568999999765 666666676543
No 84
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.78 E-value=0.00019 Score=75.31 Aligned_cols=65 Identities=12% Similarity=0.089 Sum_probs=50.2
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
..|-+-|..++..+......+.+-+++-...|+|||..+.+++..+... ....+++++|+.....
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~--~~~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALIST--GETGIILAAPTHAAKK 88 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHT--TCCCEEEEESSHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCceEEEecCcHHHHH
Confidence 4689999999998876655553457889999999999888888877552 2257999999876543
No 85
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.75 E-value=0.0002 Score=78.11 Aligned_cols=154 Identities=20% Similarity=0.325 Sum_probs=92.0
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~~ 244 (520)
..|-+.|..++..++. + +-+++...+|+|||.++..++..+.. ....++||++|++.. .+-...+.+. +.
T Consensus 179 ~~ln~~Q~~av~~~l~----~-~~~li~GppGTGKT~~~~~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~--~~ 249 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----R-PLSLIQGPPGTGKTVTSATIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQT--GL 249 (624)
T ss_dssp CCCCHHHHHHHHHHHT----C-SEEEEECCTTSCHHHHHHHHHHHHHT--SSSCCEEEEESSHHHHHHHHHHHHTT--TC
T ss_pred CCCCHHHHHHHHHHhc----C-CCeEEECCCCCCHHHHHHHHHHHHHH--cCCCeEEEEeCcHHHHHHHHHHHHhc--CC
Confidence 4689999999988762 2 34688899999999998888876643 256789999998654 4455555543 23
Q ss_pred eEEEecCCCchh---------h------------------------------hHHHHHH---hhcCCCCCccEEEeehhh
Q 039292 245 SVLQYHGAGRTA---------Y------------------------------SRELSSL---AKAGLPPPFNVLLVCYSL 282 (520)
Q Consensus 245 ~v~~~~g~~~~~---------~------------------------------~~~~~~~---~~~~~~~~~~vlitty~~ 282 (520)
.++.+.+..+.. . ......+ .........+|+++|...
T Consensus 250 ~~~R~~~~~r~~~~~~~~~~tl~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T~~~ 329 (624)
T 2gk6_A 250 KVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG 329 (624)
T ss_dssp CEEECCCTGGGSCCCTTTTTBHHHHHTSCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEETGG
T ss_pred eEEeeccccchhhccchhhhhHHHHHHhccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEcChh
Confidence 333333221100 0 0000000 000001135788887665
Q ss_pred HhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCC
Q 039292 283 FERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 283 l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~ 343 (520)
+.. ..+....|++||||||.....+. .+..+. ....+++|-|=|-|
T Consensus 330 ~~~---------~~l~~~~fd~viIDEAsQ~~e~~-----~li~l~-~~~~~~ilvGD~~Q 375 (624)
T 2gk6_A 330 AGD---------PRLAKMQFRSILIDESTQATEPE-----CMVPVV-LGAKQLILVGDHCQ 375 (624)
T ss_dssp GGC---------GGGTTCCCSEEEETTGGGSCHHH-----HHHHHT-TTBSEEEEEECTTS
T ss_pred hcc---------hhhhcCCCCEEEEecccccCcHH-----HHHHHH-hcCCeEEEecChhc
Confidence 432 12445689999999997664332 233332 23468999998877
No 86
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.60 E-value=0.00023 Score=76.72 Aligned_cols=132 Identities=15% Similarity=0.075 Sum_probs=81.0
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSF 244 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~ 244 (520)
...|-+.|..++..+. .+ +-+++...+|+|||.++.+++..+.. .+.++++++|+........+... .
T Consensus 187 ~~~L~~~Q~~Av~~~~----~~-~~~~I~G~pGTGKTt~i~~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~~~----~ 254 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLA----GH-RLVVLTGGPGTGKSTTTKAVADLAES---LGLEVGLCAPTGKAARRLGEVTG----R 254 (574)
T ss_dssp TTTCCHHHHHHHHHHT----TC-SEEEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHHT----S
T ss_pred cCCCCHHHHHHHHHHH----hC-CEEEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEecCcHHHHHHhHhhhc----c
Confidence 4578999999998876 22 34688999999999988888776644 45789999998776665544321 0
Q ss_pred eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHH
Q 039292 245 SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNL 324 (520)
Q Consensus 245 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l 324 (520)
....+ ..+.. ... +.+.. ..-....+++|||||++.+- ......+
T Consensus 255 ~a~Ti------------h~ll~--------~~~---~~~~~---------~~~~~~~~dvlIIDEasml~---~~~~~~L 299 (574)
T 3e1s_A 255 TASTV------------HRLLG--------YGP---QGFRH---------NHLEPAPYDLLIVDEVSMMG---DALMLSL 299 (574)
T ss_dssp CEEEH------------HHHTT--------EET---TEESC---------SSSSCCSCSEEEECCGGGCC---HHHHHHH
T ss_pred cHHHH------------HHHHc--------CCc---chhhh---------hhcccccCCEEEEcCccCCC---HHHHHHH
Confidence 00000 00000 000 00000 00123468999999999983 3333333
Q ss_pred HHHhhhcCcEEEEeccCCCC
Q 039292 325 MSVARNANQRLMLTGTPLQN 344 (520)
Q Consensus 325 ~~l~~~~~~rl~LTgTPi~n 344 (520)
.... ....+++|.|-|-|.
T Consensus 300 l~~~-~~~~~lilvGD~~QL 318 (574)
T 3e1s_A 300 LAAV-PPGARVLLVGDTDQL 318 (574)
T ss_dssp HTTS-CTTCEEEEEECTTSC
T ss_pred HHhC-cCCCEEEEEeccccc
Confidence 3322 456789999999884
No 87
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.47 E-value=0.00061 Score=76.13 Aligned_cols=154 Identities=20% Similarity=0.323 Sum_probs=90.6
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~~ 244 (520)
..|-+.|..+|..++. + +-.++...+|+|||.++..++..+.. ....++||++|+... .+-...+... +.
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~-~~~lI~GppGTGKT~ti~~~i~~l~~--~~~~~ilv~a~tn~A~~~l~~~l~~~--g~ 425 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----R-PLSLIQGPPGTGKTVTSATIVYHLAR--QGNGPVLVCAPSNIAVDQLTEKIHQT--GL 425 (800)
T ss_dssp CCCCHHHHHHHHHHHT----S-SEEEEECCTTSCHHHHHHHHHHHHHT--TCSSCEEEEESSHHHHHHHHHHHHTT--TC
T ss_pred cCCCHHHHHHHHHhcc----C-CeEEEEcCCCCCHHHHHHHHHHHHHH--cCCCcEEEEcCcHHHHHHHHHHHHHh--Cc
Confidence 4689999999987762 2 23688999999999998888877643 256789999998754 4444445443 23
Q ss_pred eEEEecCCCchh---------hh------------HHHHHHhh---------------------cCCCCCccEEEeehhh
Q 039292 245 SVLQYHGAGRTA---------YS------------RELSSLAK---------------------AGLPPPFNVLLVCYSL 282 (520)
Q Consensus 245 ~v~~~~g~~~~~---------~~------------~~~~~~~~---------------------~~~~~~~~vlitty~~ 282 (520)
.++.+++..+.. .. ..+..+.. .......+|+++|...
T Consensus 426 ~vvRlg~~~r~~i~~~~~~~tlh~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~ 505 (800)
T 2wjy_A 426 KVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVG 505 (800)
T ss_dssp CEEECCCGGGGGCCCTTGGGBHHHHHHTCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEETGG
T ss_pred ceEeecccchhhhcchhhhhhHHHHHHcCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEchhh
Confidence 333333221100 00 00000000 0000124677777665
Q ss_pred HhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCC
Q 039292 283 FERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 283 l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~ 343 (520)
+.. ..+....|++||||||..+..+. .+..+. ....+++|-|=|-|
T Consensus 506 ~~~---------~~l~~~~fd~viIDEAsQ~~e~~-----~li~l~-~~~~~~ilvGD~~Q 551 (800)
T 2wjy_A 506 AGD---------PRLAKMQFRSILIDESTQATEPE-----CMVPVV-LGAKQLILVGDHCQ 551 (800)
T ss_dssp GGC---------TTTTTCCCSEEEETTGGGSCHHH-----HHHHHT-TTBSEEEEEECTTS
T ss_pred hCC---------hhhhcCCCCEEEEECCCCCCcHH-----HHHHHH-hcCCeEEEeccccc
Confidence 432 12445689999999997664322 233332 33468999998877
No 88
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.00057 Score=76.40 Aligned_cols=153 Identities=18% Similarity=0.302 Sum_probs=91.2
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~~ 244 (520)
..|-+.|..+|..++. + +-+++...+|+|||.+++.++..+... ...++||++|++.. .+-...+.+.. .
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~-~~~lI~GppGTGKT~~i~~~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~g--~ 429 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----R-PLSLIQGPPGTGKTVTSATIVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDLG--L 429 (802)
T ss_dssp CCCCHHHHHHHHHHTT----C-SEEEEECSTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHTT--C
T ss_pred ccCCHHHHHHHHHHhc----C-CCEEEECCCCCCHHHHHHHHHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhhC--c
Confidence 4689999999988752 2 236888899999999988888766432 45789999998764 55555566542 3
Q ss_pred eEEEecCCCchh---------h-----------------------------hHHHHHH---hhcCCCCCccEEEeehhhH
Q 039292 245 SVLQYHGAGRTA---------Y-----------------------------SRELSSL---AKAGLPPPFNVLLVCYSLF 283 (520)
Q Consensus 245 ~v~~~~g~~~~~---------~-----------------------------~~~~~~~---~~~~~~~~~~vlitty~~l 283 (520)
.++.+++..+.. . ...+... .........+|+++|...+
T Consensus 430 ~ilR~g~~~r~~i~~~~~~~tl~~~~~~~~~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~T~~~~ 509 (802)
T 2xzl_A 430 KVVRLTAKSREDVESSVSNLALHNLVGRGAKGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCCTCVGA 509 (802)
T ss_dssp CEEECCCGGGTTSCCTTGGGBHHHHHHTTCCTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEEETTGG
T ss_pred cEEeecccchhhhcchhhhhhHHHHHHhhcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEechhhc
Confidence 333332211100 0 0000000 0000011357888887655
Q ss_pred hhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCC
Q 039292 284 ERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQ 343 (520)
Q Consensus 284 ~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~ 343 (520)
... .+.. .|++||||||..+.... .+..+. ....+++|-|=|-|
T Consensus 510 ~~~---------~L~~-~fd~viIDEA~q~~e~~-----~li~l~-~~~~~lilvGD~~Q 553 (802)
T 2xzl_A 510 GDK---------RLDT-KFRTVLIDESTQASEPE-----CLIPIV-KGAKQVILVGDHQQ 553 (802)
T ss_dssp GCT---------TCCS-CCSEEEETTGGGSCHHH-----HHHHHT-TTBSEEEEEECTTS
T ss_pred ChH---------HHhc-cCCEEEEECccccchHH-----HHHHHH-hCCCEEEEEeCccc
Confidence 421 1233 89999999998774321 233332 33468999998877
No 89
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=97.36 E-value=0.0022 Score=69.73 Aligned_cols=74 Identities=19% Similarity=0.119 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchh----hHHHHHHHhcC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLE----NWERELKKWCP 242 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~----~W~~E~~~~~p 242 (520)
..++-|+.|.-.|. .|.|.-..||.|||+++... .++.. -.+..+.||+|+.-|. .|...+-.|+
T Consensus 75 r~~dvQligg~~L~-------~G~iaEM~TGEGKTLva~lp-~~lnA--L~G~~vhVvT~ndyLA~rdae~m~~l~~~L- 143 (822)
T 3jux_A 75 RPFDVQVMGGIALH-------EGKVAEMKTGEGKTLAATMP-IYLNA--LIGKGVHLVTVNDYLARRDALWMGPVYLFL- 143 (822)
T ss_dssp CCCHHHHHHHHHHH-------TTCEEECCTTSCHHHHTHHH-HHHHH--TTSSCEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred CCcHHHHHHHHHHh-------CCChhhccCCCCccHHHHHH-HHHHH--hcCCceEEEeccHHHHHhHHHHHHHHHHHh-
Confidence 45677888876554 35599999999999975433 33322 2356799999987663 3999999998
Q ss_pred CCeEEEecC
Q 039292 243 SFSVLQYHG 251 (520)
Q Consensus 243 ~~~v~~~~g 251 (520)
++.+.+...
T Consensus 144 glsvg~i~~ 152 (822)
T 3jux_A 144 GLRVGVINS 152 (822)
T ss_dssp TCCEEEEET
T ss_pred CCEEEEEcC
Confidence 455555444
No 90
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.16 E-value=0.0019 Score=70.73 Aligned_cols=78 Identities=22% Similarity=0.248 Sum_probs=61.4
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCCCe
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPSFS 245 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~ 245 (520)
.+.+.|..++.-+......+.+..+|..-+|+|||+++..++..+ .+|+|||+|.. +..+|..+|..|+|...
T Consensus 8 ~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~~~~------~~~~lvv~~~~~~A~ql~~el~~~~~~~~ 81 (664)
T 1c4o_A 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEAL------GRPALVLAPNKILAAQLAAEFRELFPENA 81 (664)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------TCCEEEEESSHHHHHHHHHHHHHHCTTSE
T ss_pred CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHHHHh------CCCEEEEecCHHHHHHHHHHHHHHCCCCe
Confidence 678899999998877766664335677789999999888776543 45899999975 56889999999998876
Q ss_pred EEEec
Q 039292 246 VLQYH 250 (520)
Q Consensus 246 v~~~~ 250 (520)
|..|.
T Consensus 82 V~~fp 86 (664)
T 1c4o_A 82 VEYFI 86 (664)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 66554
No 91
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.11 E-value=0.0015 Score=59.52 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=26.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
.++...||+|||..++.++..+.. .+.+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~---~g~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKL---GKKKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---TTCEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeec
Confidence 467788999999988887765533 34578888886
No 92
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.09 E-value=0.0013 Score=71.27 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=43.5
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC-CCCCCEEEEeCCcchhh
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN-NDPGPHLIVCPASVLEN 232 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~-~~~~~~LIV~P~sll~~ 232 (520)
-+.|..++..++ .+ +-+++...+|+|||.++..++..+.... ....++++++|+.....
T Consensus 151 ~~~Q~~Ai~~~l----~~-~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~ 210 (608)
T 1w36_D 151 INWQKVAAAVAL----TR-RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAA 210 (608)
T ss_dssp CCHHHHHHHHHH----TB-SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHH
T ss_pred CHHHHHHHHHHh----cC-CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHH
Confidence 478999998776 22 3478899999999988877777665432 23458999999876544
No 93
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.86 E-value=0.011 Score=60.04 Aligned_cols=159 Identities=12% Similarity=0.121 Sum_probs=89.7
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhc---
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWC--- 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~--- 241 (520)
..|.|||+..+..|.. . +-+++.-.=+.|||..+.+++.+... ...+..+++++|..- ...+...+..+.
T Consensus 162 ~~L~p~Qk~il~~l~~---~--R~~vi~~sRq~GKT~l~a~~~l~~a~-~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~ 235 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSS---K--RMTVCNLSRQLGKTTVVAIFLAHFVC-FNKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (385)
T ss_dssp CCCCHHHHHHHHHHHH---S--SEEEEEECSSSCHHHHHHHHHHHHHH-SSSSCEEEEEESSHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHhhcc---C--cEEEEEEcCcCChhHHHHHHHHHHHH-hCCCCeEEEEeCCHHHHHHHHHHHHHHHHhC
Confidence 3789999998887641 2 23577778999999887766655333 334567899999643 233445555443
Q ss_pred CC-CeEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHH
Q 039292 242 PS-FSVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYR 320 (520)
Q Consensus 242 p~-~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~ 320 (520)
|. +....... .... +. ...+..+.+.+- +...+.+..++++|+||+|.+.+. ...
T Consensus 236 P~ll~~~~~~~-~~~~----I~------f~nGs~i~~lsa------------~~~slrG~~~~~viiDE~a~~~~~-~el 291 (385)
T 2o0j_A 236 PDFLQPGIVEW-NKGS----IE------LDNGSSIGAYAS------------SPDAVRGNSFAMIYIEDCAFIPNF-HDS 291 (385)
T ss_dssp CTTTSCCEEEE-CSSE----EE------ETTSCEEEEEEC------------SHHHHHTSCCSEEEEESGGGSTTH-HHH
T ss_pred hHhhhhhhccC-CccE----EE------eCCCCEEEEEEC------------CCCCccCCCCCEEEechhhhcCCC-HHH
Confidence 32 11000000 0000 00 000112222111 345567888999999999999763 234
Q ss_pred HHHHHHHhhh-cCcEEEEeccCCCCCHHHHHHHHHHh
Q 039292 321 WKNLMSVARN-ANQRLMLTGTPLQNDLHELWSLLEFM 356 (520)
Q Consensus 321 ~~~l~~l~~~-~~~rl~LTgTPi~n~~~el~~ll~fl 356 (520)
+.++...... ...++++++||-..+ -+|.+....
T Consensus 292 ~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~~a 326 (385)
T 2o0j_A 292 WLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWTAA 326 (385)
T ss_dssp HHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHHHH
T ss_pred HHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHHHH
Confidence 4555433212 356899999997554 555555433
No 94
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.82 E-value=0.012 Score=64.12 Aligned_cols=69 Identities=16% Similarity=0.143 Sum_probs=48.6
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh-CCCCCCEEEEeCCcch-hhHHHHHHHhc
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL-NNDPGPHLIVCPASVL-ENWERELKKWC 241 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~-~~~~~~~LIV~P~sll-~~W~~E~~~~~ 241 (520)
..|-+.|..+|.. .. +.+++-..+|+|||.+.+.-+.++... ......+|+|+++... .+-.+.+....
T Consensus 8 ~~Ln~~Q~~av~~-----~~--~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVAA-----PR--SNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHTC-----CS--SCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHhC-----CC--CCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 4789999999961 12 346677779999999998888777653 2345679999997654 44455565553
No 95
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.77 E-value=0.0054 Score=66.25 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=84.5
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPSF 244 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~ 244 (520)
..|.|||+..+..+. .. +-+++.-.-|.|||..+.+++.+... ......++++.|..- ...+...+..+.-..
T Consensus 162 ~~l~p~Q~~i~~~l~---~~--r~~~i~~~Rq~GKS~~~a~~~l~~~~-~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMS---SK--RMTVCNLSRQLGKTTVVAIFLAHFVC-FNKDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCCHHHHHHHHHHH---HC--SEEEEEECSSSCHHHHHHHHHHHHHH-TSSSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred CcCCHHHHHHHHhhc---cc--cEEEEEEcCccChHHHHHHHHHHHHH-hCCCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 478999999887663 12 23577778999999877665544433 334457899999643 333445666554221
Q ss_pred eEEEecCCCchhhhHHHHHHhhcCCCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHH
Q 039292 245 SVLQYHGAGRTAYSRELSSLAKAGLPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNL 324 (520)
Q Consensus 245 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l 324 (520)
...+-.+..... ...+. ...+..+.+.+ .+...+.+..++++|+||+|.+.+.. ..+.++
T Consensus 236 p~~~~~~~~~~~-~~~i~------~~nGs~i~~~s------------~~~~~lrG~~~~~~iiDE~~~~~~~~-~l~~~~ 295 (592)
T 3cpe_A 236 PDFLQPGIVEWN-KGSIE------LDNGSSIGAYA------------SSPDAVRGNSFAMIYIEDCAFIPNFH-DSWLAI 295 (592)
T ss_dssp CTTTSCCEEEEC-SSEEE------ETTSCEEEEEE------------CCHHHHHHSCCSEEEEETGGGCTTHH-HHHHHH
T ss_pred hHhhccccccCC-ccEEE------ecCCCEEEEEe------------CCCCCccCCCcceEEEehhccCCchh-HHHHHH
Confidence 100000000000 00000 00011111111 13455677889999999999997642 455555
Q ss_pred HHHhhh-cCcEEEEeccCCCC
Q 039292 325 MSVARN-ANQRLMLTGTPLQN 344 (520)
Q Consensus 325 ~~l~~~-~~~rl~LTgTPi~n 344 (520)
...... ...++++++||-..
T Consensus 296 ~~~l~~~~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 296 QPVISSGRRSKIIITTTPNGL 316 (592)
T ss_dssp HHHHSSSSCCEEEEEECCCTT
T ss_pred HHHhccCCCceEEEEeCCCCc
Confidence 543211 34689999999655
No 96
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.73 E-value=0.011 Score=53.93 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=26.7
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
++..+||+|||..++..+..+. ..+.+++|+.|.
T Consensus 12 v~~G~mgsGKTT~ll~~a~r~~---~~g~kV~v~k~~ 45 (191)
T 1xx6_A 12 VIVGPMYSGKSEELIRRIRRAK---IAKQKIQVFKPE 45 (191)
T ss_dssp EEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEEC
T ss_pred EEECCCCCcHHHHHHHHHHHHH---HCCCEEEEEEec
Confidence 5677899999998888776553 356788999886
No 97
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.72 E-value=0.0078 Score=55.86 Aligned_cols=34 Identities=15% Similarity=0.124 Sum_probs=26.4
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc
Q 039292 192 LADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS 228 (520)
Q Consensus 192 LademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s 228 (520)
...+||+|||..++..+.... ..+.++||+.|.-
T Consensus 33 itG~MgsGKTT~lL~~a~r~~---~~g~kVli~k~~~ 66 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRTQ---FAKQHAIVFKPCI 66 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHHH---HTTCCEEEEECC-
T ss_pred EECCCCCcHHHHHHHHHHHHH---HCCCEEEEEEecc
Confidence 678899999998888876553 3567899998863
No 98
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.64 E-value=0.008 Score=65.77 Aligned_cols=78 Identities=18% Similarity=0.213 Sum_probs=60.7
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCCCe
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPSFS 245 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~ 245 (520)
....+|..++.-+......+.+..+|..-+|+|||+++..++... .+|+|||+|.. ...+|..+|..|+|...
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~~~~------~~~~lvv~~~~~~A~~l~~el~~~~~~~~ 85 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLIKEV------NKPTLVIAHNKTLAGQLYSEFKEFFPNNA 85 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHH------CCCEEEECSSHHHHHHHHHHHHHHCTTSE
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHHHHh------CCCEEEEECCHHHHHHHHHHHHHHcCCCc
Confidence 567899999998877766664335677779999999887766533 45899999975 46789999999998876
Q ss_pred EEEec
Q 039292 246 VLQYH 250 (520)
Q Consensus 246 v~~~~ 250 (520)
|..|-
T Consensus 86 v~~fp 90 (661)
T 2d7d_A 86 VEYFV 90 (661)
T ss_dssp EEEEC
T ss_pred EEEcc
Confidence 66554
No 99
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.62 E-value=0.018 Score=56.82 Aligned_cols=36 Identities=14% Similarity=-0.054 Sum_probs=26.5
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
++++|..++|+|||..+-+++..+... ..+++.+..
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~---~~~~~~i~~ 73 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKR---GYRVIYSSA 73 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHT---TCCEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC---CCEEEEEEH
Confidence 578999999999999888887766432 445555543
No 100
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.46 E-value=0.015 Score=56.75 Aligned_cols=39 Identities=26% Similarity=0.249 Sum_probs=26.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCC-CCCCEEEEeC
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNN-DPGPHLIVCP 226 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~-~~~~~LIV~P 226 (520)
.+++|..++|+|||..|-+++..+..... ...+++.+.+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 35899999999999999888877654222 1335554443
No 101
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.37 E-value=0.018 Score=54.01 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=27.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
.++..+||+|||..++.++..+.. .+.+++++.|.
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~---~g~kVli~~~~ 49 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEY---ADVKYLVFKPK 49 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh---cCCEEEEEEec
Confidence 456789999999999888876643 45678888775
No 102
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.28 E-value=0.0065 Score=62.68 Aligned_cols=108 Identities=16% Similarity=0.083 Sum_probs=67.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCCCeEEEecCCCchhhhHHHHHHhhcC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPSFSVLQYHGAGRTAYSRELSSLAKAG 268 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v~~~~g~~~~~~~~~~~~~~~~~ 268 (520)
.++....|+|||.....++. ..+.||++|+.- ...|.+.+.+.. ..
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~~~----------~~--------------- 210 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVN--------FEEDLILVPGRQAAEMIRRRANASG----------II--------------- 210 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCC--------TTTCEEEESCHHHHHHHHHHHTTTS----------CC---------------
T ss_pred EEEEcCCCCCHHHHHHHHhc--------cCCeEEEeCCHHHHHHHHHHhhhcC----------cc---------------
Confidence 46788899999987655442 257899999754 566888774321 00
Q ss_pred CCCCccEEEeehhhHhhhhccccchHHHHhhcCccEEEEeCccccCCcchHHHHHHHHHhhhcCcEEEEeccCCCC
Q 039292 269 LPPPFNVLLVCYSLFERHSVQQKDDRKILKRWRWSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQN 344 (520)
Q Consensus 269 ~~~~~~vlitty~~l~~~~~~~~~~~~~l~~~~~~~vIiDEaH~ikn~~s~~~~~l~~l~~~~~~rl~LTgTPi~n 344 (520)
...+.-+.|++.+.... .......+++||||||..+ ......++..+ ....+++|.|=|-|=
T Consensus 211 --~~~~~~V~T~dsfL~~~-------~~~~~~~~d~liiDE~sm~---~~~~l~~l~~~--~~~~~vilvGD~~Ql 272 (446)
T 3vkw_A 211 --VATKDNVRTVDSFLMNY-------GKGARCQFKRLFIDEGLML---HTGCVNFLVEM--SLCDIAYVYGDTQQI 272 (446)
T ss_dssp --CCCTTTEEEHHHHHHTT-------TSSCCCCCSEEEEETGGGS---CHHHHHHHHHH--TTCSEEEEEECTTSC
T ss_pred --ccccceEEEeHHhhcCC-------CCCCCCcCCEEEEeCcccC---CHHHHHHHHHh--CCCCEEEEecCcccc
Confidence 01134467777765421 1111234899999999977 22233333333 233899999988763
No 103
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.09 E-value=0.039 Score=51.70 Aligned_cols=34 Identities=15% Similarity=0.111 Sum_probs=25.9
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
+....||+|||..++..+... ...+.+++|+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~---~~~g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRF---QIAQYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHH---HTTTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHH---HHCCCeEEEEeec
Confidence 457789999998888776544 3456788888885
No 104
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.04 E-value=0.047 Score=59.79 Aligned_cols=68 Identities=16% Similarity=0.092 Sum_probs=47.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh-CCCCCCEEEEeCCcchh-hHHHHHHHhc
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL-NNDPGPHLIVCPASVLE-NWERELKKWC 241 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~-~~~~~~~LIV~P~sll~-~W~~E~~~~~ 241 (520)
.|-|.|..+|... + +.+++-...|+|||.+.+.-+.++... ......+|+|+.+.... .-.+.+....
T Consensus 2 ~L~~~Q~~av~~~------~-~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEFV------T-GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHCC------S-SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhCC------C-CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 4789999999641 2 346777889999999988877766543 33567899999865543 3444565554
No 105
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.82 E-value=0.092 Score=46.45 Aligned_cols=26 Identities=23% Similarity=0.255 Sum_probs=21.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
++++|..++|+|||..+-+++..+..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999998888776643
No 106
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.70 E-value=0.095 Score=46.29 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=20.9
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~ 212 (520)
++++|..++|+|||..+-+++..+.
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999888877653
No 107
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.64 E-value=0.05 Score=55.39 Aligned_cols=44 Identities=25% Similarity=0.222 Sum_probs=34.5
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWEREL 237 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 237 (520)
+|+||..++|+|||..|=|++..+ ..+++.|....++..|..|-
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~sk~vGes 226 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT------DCKFIRVSGAELVQKYIGEG 226 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH------TCEEEEEEGGGGSCSSTTHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh------CCCceEEEhHHhhccccchH
Confidence 689999999999999998887654 34677777777777765443
No 108
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.62 E-value=0.061 Score=49.88 Aligned_cols=40 Identities=13% Similarity=-0.032 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhc-CCCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 174 VGVNFLLLLYRK-GIAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 174 ~gv~~l~~~~~~-~~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
..+..+...... ..++++|..++|+|||..+-+++..+..
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344444433332 3357889999999999988887766643
No 109
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.54 E-value=0.017 Score=57.14 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.2
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
.|++|..++|+|||..|-+++..+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999888876543
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.46 E-value=0.079 Score=52.63 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=37.1
Q ss_pred CcHHHHHHHHHHHHHHhcCC--CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 168 LKPYQLVGVNFLLLLYRKGI--AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~--~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
+.|+|...++.+......+. ++.++..+.|+|||..|.+++..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 57999999988887766542 24788999999999999999887743
No 111
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.45 E-value=0.017 Score=58.15 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=20.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
+|++|..++|+|||..|-+++..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999988887655
No 112
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.39 E-value=0.11 Score=53.83 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=21.8
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.++++|..++|+|||..+-++...+..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~ 156 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ 156 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999988877766643
No 113
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.32 E-value=0.11 Score=48.22 Aligned_cols=35 Identities=20% Similarity=0.078 Sum_probs=24.7
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS 228 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s 228 (520)
++..+||+|||..++-.+..+.. ...+++|+.|..
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~---~g~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIY---AKQKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH---TTCCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---cCCceEEEEecc
Confidence 46778999999877777654433 346788888853
No 114
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.25 E-value=0.24 Score=44.02 Aligned_cols=44 Identities=18% Similarity=0.145 Sum_probs=32.5
Q ss_pred cHHHHHHHHHHHHHHhc----CCCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLYRK----GIAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~----~~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
.+.|..++..+...... ...+++|..++|+|||..+-+++..+.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788888887654421 124678899999999998888877664
No 115
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.24 E-value=0.12 Score=51.59 Aligned_cols=55 Identities=20% Similarity=0.248 Sum_probs=37.9
Q ss_pred cHHHHHHHHHHHHHHhcCC---CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 169 KPYQLVGVNFLLLLYRKGI---AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~---~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
.+.+...+..+......+. ++++|..++|+|||..|-+++..+. ...|++.+...
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~----~~~~~~~~~~~ 106 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG----PDTPFTAIAGS 106 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC----SSCCEEEEEGG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc----ccCCcccccch
Confidence 4566777777776655543 3689999999999999988887652 22455555443
No 116
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.20 E-value=0.12 Score=47.09 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=24.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
++...||+|||...+-.+..... ...+++++.|.
T Consensus 24 fiyG~MgsGKTt~Ll~~i~n~~~---~~~kvl~~kp~ 57 (195)
T 1w4r_A 24 VILGPMFSGKSTELMRRVRRFQI---AQYKCLVIKYA 57 (195)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHH---TTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEccc
Confidence 56778999999766666654433 34778888875
No 117
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.07 E-value=0.063 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=19.8
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~ 210 (520)
.+|++|..++|+|||..+-+++..
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 367899999999999988777653
No 118
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.90 E-value=0.17 Score=48.17 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=23.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
.+++|..++|+|||..|-++...+ .....|++.|
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~---~~~~~~~~~v 63 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS---SRWQGPFISL 63 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS---TTTTSCEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc---CccCCCeEEE
Confidence 578999999999998776655432 2233455544
No 119
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.49 Score=46.54 Aligned_cols=45 Identities=4% Similarity=-0.199 Sum_probs=29.6
Q ss_pred cHHHHHHHH-HHHHHHhcCC-CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 169 KPYQLVGVN-FLLLLYRKGI-AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 169 r~~Q~~gv~-~l~~~~~~~~-~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|.-|...+. ++......+. ++++|...+|+|||.++-+++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 445555554 3333333332 35678999999999999988887754
No 120
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.69 E-value=0.23 Score=46.75 Aligned_cols=35 Identities=31% Similarity=0.328 Sum_probs=25.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS 228 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s 228 (520)
+|++|..++|+|||..|-+++..+ ..+++.+....
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~------~~~~~~~~~~~ 74 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA------QVPFLAMAGAE 74 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCCEEEEETTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCEEEechHH
Confidence 578999999999999888776644 23555554443
No 121
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.57 E-value=0.44 Score=49.05 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=35.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCCCeEEEe
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPSFSVLQY 249 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~~~v~~~ 249 (520)
++++...|+|||.++..++.++.. .+.++++|+--.-...-...+..|.....+-++
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~---~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~ 159 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQK---RGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEE
Confidence 467778999999999998887753 345666666433323334455555543334333
No 122
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.49 E-value=0.18 Score=49.49 Aligned_cols=49 Identities=18% Similarity=0.212 Sum_probs=28.1
Q ss_pred CccEEEEeCccccCCcchHHHHHHHHHhh--hcCcEEEEeccCCCCCHHHHHH
Q 039292 301 RWSCVLMDEAHALKDKNSYRWKNLMSVAR--NANQRLMLTGTPLQNDLHELWS 351 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~s~~~~~l~~l~~--~~~~rl~LTgTPi~n~~~el~~ 351 (520)
...+||+||+|.+.+. .....+..+.. ....++++|+++...-...+.+
T Consensus 105 ~~~vliiDEi~~l~~~--~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~s 155 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLA--ESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQS 155 (324)
T ss_dssp CEEEEEEESCCCGGGH--HHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHH
T ss_pred CCeEEEEECCcccCcH--HHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHh
Confidence 5789999999999511 12222322211 3456788888776543444444
No 123
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.41 E-value=0.2 Score=48.71 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=26.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL 230 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll 230 (520)
.|++|..++|+|||..|-+++..+ +.+++.|....+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l------~~~~i~v~~~~l~ 73 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM------GINPIMMSAGELE 73 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH------TCCCEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh------CCCEEEEeHHHhh
Confidence 578899999999999988887665 3455555544443
No 124
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.41 E-value=0.057 Score=53.43 Aligned_cols=38 Identities=16% Similarity=0.229 Sum_probs=26.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL 230 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll 230 (520)
+|++|..++|+|||..|-+++..+ ...+++.|....++
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~-----~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLV 83 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT-----TSCEEEEEECCSSC
T ss_pred ceEEEECCCCccHHHHHHHHHHHc-----CCCcEEEEEhHHHH
Confidence 578999999999999888877543 23455555544443
No 125
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.38 E-value=0.11 Score=52.78 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=26.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
.++||..++|+|||..|-+++..+ ..+++.|.+..+...
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~~------~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAES------NATFFNISAASLTSK 187 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT------TCEEEEECSCCC---
T ss_pred ceEEEECCCCCCHHHHHHHHHHhh------cCcEEEeeHHHhhcc
Confidence 578999999999999887775432 345666655544433
No 126
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.24 E-value=0.23 Score=44.92 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=19.9
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
++++|..++|+|||..+-+++..+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999888777655
No 127
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.18 E-value=0.17 Score=52.30 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=33.4
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERE 236 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E 236 (520)
.+|+||..++|+|||..|-|++..+ ..+++.|....++..|..+
T Consensus 243 prGILLyGPPGTGKTlLAkAiA~e~------~~~fi~vs~s~L~sk~vGe 286 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCARAVANRT------DATFIRVIGSELVQKYVGE 286 (467)
T ss_dssp CSEEEECSCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCCCSSSH
T ss_pred CCceEeeCCCCCcHHHHHHHHHhcc------CCCeEEEEhHHhhcccCCH
Confidence 4789999999999999998887655 3467777777776666433
No 128
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.17 E-value=0.25 Score=49.24 Aligned_cols=44 Identities=25% Similarity=0.156 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHHH--hcCCCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLY--RKGIAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~--~~~~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
+..+...+..++... ....++++|..++|+|||..+-+++..+.
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 445555544433222 12335689999999999998888776653
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.10 E-value=0.14 Score=51.34 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHHhcC--CCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLYRKG--IAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~--~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
+..+...+..++.....+ .++++|..++|+|||..+-+++..+..
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455666555444333222 235889999999999998888776643
No 130
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.10 E-value=0.23 Score=42.60 Aligned_cols=24 Identities=17% Similarity=0.005 Sum_probs=18.7
Q ss_pred CCCceEEeCCCCCCHHHHHHHHHH
Q 039292 186 GIAGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 186 ~~~g~ILademGlGKTi~aia~l~ 209 (520)
....++|..++|+|||..|-++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~ 46 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQ 46 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHHHHHH
Confidence 335689999999999988766543
No 131
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.98 E-value=0.45 Score=48.90 Aligned_cols=33 Identities=24% Similarity=0.157 Sum_probs=24.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
++++...|+|||.++..++..+.. .++++++|+
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~---~G~kVllv~ 132 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKK---RGYKVGLVA 132 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEe
Confidence 456788999999999888877754 345566655
No 132
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=93.95 E-value=0.074 Score=45.70 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=21.1
Q ss_pred HHHHHHHHhcCCCceEEeCCCCCCHHHHHHHH
Q 039292 176 VNFLLLLYRKGIAGAILADEMGLGKTIQAITY 207 (520)
Q Consensus 176 v~~l~~~~~~~~~g~ILademGlGKTi~aia~ 207 (520)
+..+.........+++|..++|+|||..|-++
T Consensus 16 l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i 47 (143)
T 3co5_A 16 MNREVEAAAKRTSPVFLTGEAGSPFETVARYF 47 (143)
T ss_dssp HHHHHHHHHTCSSCEEEEEETTCCHHHHHGGG
T ss_pred HHHHHHHHhCCCCcEEEECCCCccHHHHHHHH
Confidence 33333333344467899999999999866543
No 133
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.79 E-value=0.12 Score=51.89 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=26.2
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL 230 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll 230 (520)
..+++|..++|+|||..|-+++..+ ..+++.|....+.
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~------~~~~~~i~~~~l~ 154 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS------GATFFSISASSLT 154 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT------TCEEEEEEGGGGC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc------CCeEEEEehHHhh
Confidence 4678999999999999887776533 3455555444333
No 134
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.70 E-value=0.21 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=20.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
++++|..++|+|||..|-+++..+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 578999999999999888776544
No 135
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=93.61 E-value=0.063 Score=55.69 Aligned_cols=42 Identities=17% Similarity=0.313 Sum_probs=26.1
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
.+|++|..++|+|||..|-+++..+ ...+++.|....++..|
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~-----~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA-----NNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC-----CSSEEEEECCC------
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc-----CCCCEEEEeHHHHHhhh
Confidence 3688999999999999888776543 23455555555444333
No 136
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.50 E-value=0.061 Score=55.45 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=32.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERE 236 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E 236 (520)
+|+||..++|+|||..|-|++..+ +.+++.|....++..|..+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~------~~~~~~v~~s~l~sk~~Ge 258 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI------GANFIFSPASGIVDKYIGE 258 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGTCCSSSSH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh------CCCEEEEehhhhccccchH
Confidence 689999999999999998887655 3466777666666655433
No 137
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.33 E-value=0.26 Score=49.14 Aligned_cols=45 Identities=18% Similarity=0.123 Sum_probs=28.9
Q ss_pred cHHHHHHHHHHHHHH--hcCCCceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLY--RKGIAGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~--~~~~~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
|..+...+..++... ....+.++|..+.|+|||..+-+++..+..
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 455555554443322 122346889999999999988887766644
No 138
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.32 E-value=0.41 Score=45.61 Aligned_cols=23 Identities=22% Similarity=0.089 Sum_probs=19.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
.+++|..++|+|||..|-++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46889999999999988887764
No 139
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.30 E-value=1.5 Score=43.53 Aligned_cols=43 Identities=28% Similarity=0.259 Sum_probs=27.2
Q ss_pred cHHHHHHHHHHHHHH-hcCC-C--ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLY-RKGI-A--GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~-~~~~-~--g~ILademGlGKTi~aia~l~~l 211 (520)
+..+...+...+... ..+. . .++|..++|+|||..+-+++..+
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 455555554444332 1111 2 47899999999999887777655
No 140
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.22 E-value=0.56 Score=45.77 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=26.6
Q ss_pred cCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 185 KGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 185 ~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
.....++|..++|+|||..|-++.... .....|++.|-..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~---~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACS---ARSDRPLVTLNCA 62 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHS---SCSSSCCCEEECS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhC---cccCCCeEEEeCC
Confidence 333578999999999998876655432 3345666655433
No 141
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.21 E-value=0.99 Score=43.40 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.3
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
.+++|..++|+|||..|-+++..+
T Consensus 51 ~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999888777655
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=93.04 E-value=0.72 Score=42.07 Aligned_cols=43 Identities=23% Similarity=0.087 Sum_probs=27.0
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
+......+..++.... ..+.++|..+.|+|||..+-+++..+.
T Consensus 28 ~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 28 QEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4445555544443211 113478999999999998877776553
No 143
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=93.02 E-value=0.72 Score=41.93 Aligned_cols=33 Identities=15% Similarity=0.000 Sum_probs=24.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS 228 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s 228 (520)
++|..++|+|||..+..++. . ..++++++.-..
T Consensus 23 ~~i~G~~GsGKTtl~~~l~~--~----~~~~v~~i~~~~ 55 (220)
T 2cvh_A 23 TQVYGPYASGKTTLALQTGL--L----SGKKVAYVDTEG 55 (220)
T ss_dssp EEEECSTTSSHHHHHHHHHH--H----HCSEEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHH--H----cCCcEEEEECCC
Confidence 57889999999998887775 1 245777776543
No 144
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.97 E-value=0.22 Score=48.76 Aligned_cols=38 Identities=8% Similarity=-0.118 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCC-CceEEeCCCCCCHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLYRKGI-AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 172 Q~~gv~~l~~~~~~~~-~g~ILademGlGKTi~aia~l~ 209 (520)
|...+..+......+. ...|+..+.|.|||..+.+++.
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4445555554444442 3578899999999998887765
No 145
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.93 E-value=0.18 Score=49.82 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=20.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~ 212 (520)
++++|..++|+|||..+-+++..+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999998888877653
No 146
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=92.70 E-value=0.29 Score=47.60 Aligned_cols=40 Identities=18% Similarity=0.196 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
+.....+..++.. ......++..++|+|||..+-+++..+
T Consensus 31 ~~~~~~l~~~l~~--~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 31 EHIVKRLKHYVKT--GSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp HHHHHHHHHHHHH--TCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4444444443332 222358999999999999988887665
No 147
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.69 E-value=0.071 Score=54.91 Aligned_cols=44 Identities=20% Similarity=0.247 Sum_probs=33.7
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERE 236 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E 236 (520)
.+|+||..++|+|||..|-|++..+ +.+++.|....++..|..+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~------~~~f~~v~~s~l~~~~vGe 258 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT------NATFLKLAAPQLVQMYIGE 258 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH------TCEEEEEEGGGGCSSCSSH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh------CCCEEEEehhhhhhcccch
Confidence 3689999999999999998887655 3467777777777666433
No 148
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.68 E-value=0.55 Score=45.46 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=24.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
.++|..++|+|||..|-++...+. ...++++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~---~~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLF---DTEEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHH---SCGGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHc---CCCcceEEee
Confidence 478999999999998888776653 2344555553
No 149
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.66 E-value=0.088 Score=53.93 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=33.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERE 236 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E 236 (520)
+|+||..++|+|||..|-|++..+ ..+++.|....++..|..+
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~------~~~fi~v~~s~l~sk~vGe 259 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQT------SATFLRIVGSELIQKYLGD 259 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHH------TCEEEEEESGGGCCSSSSH
T ss_pred CCCceECCCCchHHHHHHHHHHHh------CCCEEEEEHHHhhhccCch
Confidence 689999999999999998888655 3467777777777666443
No 150
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.54 E-value=0.96 Score=44.85 Aligned_cols=42 Identities=24% Similarity=0.108 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
+......+..++...... +..++..+.|+|||..+-+++..+
T Consensus 21 ~~~~~~~L~~~l~~~~~~-~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 21 QEHVLTALANGLSLGRIH-HAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp CHHHHHHHHHHHHHTCCC-SEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCC-eEEEEECCCCCCHHHHHHHHHHHh
Confidence 344444444444321111 246899999999999988887766
No 151
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.47 E-value=0.19 Score=52.66 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=19.2
Q ss_pred CCceEEeCCCCCCHHHHHHHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~ 209 (520)
..|++|..++|+|||..|-++..
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEECcCCCCHHHHHHHHHH
Confidence 35789999999999998877654
No 152
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.21 E-value=0.96 Score=45.41 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=39.1
Q ss_pred HHHHHHHH--HHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHH
Q 039292 174 VGVNFLLL--LYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWE 234 (520)
Q Consensus 174 ~gv~~l~~--~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~ 234 (520)
.++..++. .+..+ .-++++.++|+|||..++.++..... ..+++++|.......+|.
T Consensus 60 ~~LD~~Lg~GGl~~G-~li~I~G~pGsGKTtlal~la~~~~~---~g~~vlyi~~E~s~~~~~ 118 (366)
T 1xp8_A 60 LSLDLALGVGGIPRG-RITEIYGPESGGKTTLALAIVAQAQK---AGGTCAFIDAEHALDPVY 118 (366)
T ss_dssp HHHHHHTSSSSEETT-SEEEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHHH
T ss_pred HHHHHHhCCCCccCC-cEEEEEcCCCCChHHHHHHHHHHHHH---CCCeEEEEECCCChhHHH
Confidence 34555653 22222 23678999999999999988876643 356889998877766663
No 153
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.85 E-value=1.2 Score=46.00 Aligned_cols=47 Identities=17% Similarity=0.027 Sum_probs=34.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
++|+..+|+|||.-++.++..... ..+.+++++....-..++...+.
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~--~~g~~vl~~slE~~~~~l~~R~~ 249 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAAL--KEGVGVGIYSLEMPAAQLTLRMM 249 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH--TTCCCEEEEESSSCHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEECCCCHHHHHHHHH
Confidence 689999999999999888876543 23568999988655555555443
No 154
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=91.71 E-value=0.61 Score=48.22 Aligned_cols=23 Identities=30% Similarity=0.176 Sum_probs=18.9
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
.++||..++|+|||..+-++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999887766543
No 155
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.66 E-value=0.11 Score=53.30 Aligned_cols=41 Identities=17% Similarity=0.191 Sum_probs=31.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWE 234 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~ 234 (520)
+|+||..++|+|||..|-|++..+ ..+++.|....++..|.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~------~~~~~~v~~~~l~~~~~ 247 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST------KAAFIRVNGSEFVHKYL 247 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH------TCEEEEEEGGGTCCSSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh------CCCeEEEecchhhcccc
Confidence 689999999999999998887655 34667776666665553
No 156
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.59 E-value=1.7 Score=44.77 Aligned_cols=45 Identities=16% Similarity=0.047 Sum_probs=32.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERE 236 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E 236 (520)
++|+..+|+|||..++.++..+... .+.+++++.......++...
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~~~--~g~~Vl~~s~E~s~~~l~~r 250 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVATK--TNENVAIFSLEMSAQQLVMR 250 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHH--SSCCEEEEESSSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEEECCCCHHHHHHH
Confidence 6899999999999988888766432 24589998875444454443
No 157
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=91.49 E-value=1.2 Score=41.43 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=21.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~ 213 (520)
.+++....|.|||..++.++..+..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~ 32 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLR 32 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4688999999999999999888754
No 158
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=91.43 E-value=2.3 Score=43.81 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 175 GVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 175 gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
++..++..+..| .=+|++..+|.|||.-++.++...... +.++++++-.--..++...+.
T Consensus 186 ~LD~~lgGl~~G-~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fSlEms~~ql~~R~~ 245 (444)
T 3bgw_A 186 ELDRMTYGYKRR-NFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLEMGKKENIKRLI 245 (444)
T ss_dssp HHHHHHSSBCSS-CEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEECSSSCTTHHHHHHH
T ss_pred HHHhhcCCCCCC-cEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHH
Confidence 455555322222 237899999999999999888766542 568999987655555554443
No 159
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=91.24 E-value=1.4 Score=43.78 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=31.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
.+++.++|+|||..++.++..... ..++++++.-.....++
T Consensus 64 v~I~G~pGsGKTtLal~la~~~~~---~g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 64 IEIYGPESSGKTTVALHAVANAQA---AGGIAAFIDAEHALDPE 104 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECCCCcCHH
Confidence 678899999999999888876643 35678888876655554
No 160
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.97 E-value=0.3 Score=47.13 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=19.8
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~ 210 (520)
..|++|..++|+|||..|-+++..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 367899999999999988776653
No 161
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=90.83 E-value=1.4 Score=37.87 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=19.9
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~ 212 (520)
...+|..++|+|||..+-+++..+.
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4578899999999988877776553
No 162
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.74 E-value=4.2 Score=37.31 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=32.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
.+|+.++|+|||..++.++..... ..++++++.-.....+..+.+.
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~~~---~~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNGLK---MGEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHH---TTCCEEEEESSSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEccCCHHHHHHHHH
Confidence 578889999999998888766643 3567888877655555544444
No 163
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.45 E-value=0.73 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.275 Sum_probs=19.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
..+|..+.|+|||..+-+++..+
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999888887665
No 164
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=90.38 E-value=0.6 Score=52.46 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=21.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~ 213 (520)
++++|..++|+|||..+-+++..+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 56899999999999988888776643
No 165
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=90.20 E-value=0.57 Score=43.54 Aligned_cols=49 Identities=20% Similarity=0.290 Sum_probs=34.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKW 240 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~ 240 (520)
.+++.++|+|||.-++.++..... ....+++++.-.....+..+.+..+
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~--~~~~~v~~~s~E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAE--EYGEPGVFVTLEERARDLRREMASF 81 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH--HHCCCEEEEESSSCHHHHHHHHHTT
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--hcCCCceeecccCCHHHHHHHHHHc
Confidence 689999999999998887754322 2356788888765555555555443
No 166
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.02 E-value=7.7 Score=35.00 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=27.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
++|..+.|+|||..+..++..+.. ..++++++.......+
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~~---~~~~v~~~~~~~~~~~ 65 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGLR---DGDPCIYVTTEESRDS 65 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH---HTCCEEEEESSSCHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCeEEEEEcccCHHH
Confidence 568889999999888877755543 3457777765443333
No 167
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.01 E-value=3.4 Score=40.31 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHh---cCCCceEEeCCCCCCHHHHHHHHHH
Q 039292 170 PYQLVGVNFLLLLYR---KGIAGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~---~~~~g~ILademGlGKTi~aia~l~ 209 (520)
......+..++.... ....+++|..++|+|||..|-++..
T Consensus 35 ~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~ 77 (338)
T 3pfi_A 35 ESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISY 77 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 344444444443332 2335789999999999998877654
No 168
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.00 E-value=2.8 Score=41.81 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=30.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
+++..++|+|||..++.++..+.. ..+++++|.......+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~---~gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQK---MGGVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEecccccch
Confidence 457888999999998888876643 4567888888665554
No 169
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.93 E-value=2.6 Score=45.19 Aligned_cols=36 Identities=22% Similarity=0.264 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 175 GVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 175 gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
.++.+......+ ..++|..++|+|||..+-+++..+
T Consensus 49 ~l~~l~~~i~~g-~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 49 AVEVIKTAANQK-RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred hHhhccccccCC-CEEEEEeCCCCCHHHHHHHHhccC
Confidence 333333333445 578999999999999887776544
No 170
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.98 E-value=8.1 Score=37.52 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHH
Q 039292 174 VGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELK 238 (520)
Q Consensus 174 ~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~ 238 (520)
.++..++..+..| .=++|+..+|+|||.-++.++..... ...++|+++-.--..+....+.
T Consensus 56 ~~LD~~lgGl~~G-~l~li~G~pG~GKTtl~l~ia~~~a~---~g~~vl~~slE~s~~~l~~R~~ 116 (315)
T 3bh0_A 56 TELDRMTYGYKRR-NFVLIAARPSMGKTAFALKQAKNMSD---NDDVVNLHSLEMGKKENIKRLI 116 (315)
T ss_dssp HHHHHHHSSBCTT-CEEEEECCTTSSHHHHHHHHHHHHHT---TTCEEEEEESSSCHHHHHHHHH
T ss_pred HHHHhhcCCCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEECCCCHHHHHHHHH
Confidence 3445554222323 23789999999999988888765533 2378999987655555444444
No 171
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.92 E-value=2.2 Score=41.60 Aligned_cols=33 Identities=12% Similarity=0.189 Sum_probs=23.3
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
++....|+|||..+..++..+.. .++.++++.-
T Consensus 108 ~ivG~~GsGKTTl~~~LA~~l~~---~g~kV~lv~~ 140 (306)
T 1vma_A 108 MVVGVNGTGKTTSCGKLAKMFVD---EGKSVVLAAA 140 (306)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEE
T ss_pred EEEcCCCChHHHHHHHHHHHHHh---cCCEEEEEcc
Confidence 45667999999988888776643 3456666653
No 172
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=88.91 E-value=0.38 Score=46.76 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.5
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
.|++|..++|+|||..|-+++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 57899999999999988777653
No 173
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=88.40 E-value=5 Score=39.94 Aligned_cols=40 Identities=10% Similarity=0.077 Sum_probs=30.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchh
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLE 231 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~ 231 (520)
-++++.++|+|||..++.++..... ...++++|.......
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~---~g~~vlyid~E~s~~ 104 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALD 104 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEESSCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeCCCCcc
Confidence 3688999999999999998876643 346788887754443
No 174
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.39 E-value=7.2 Score=35.61 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=25.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHh---CCCCCCEEEEeCCc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHL---NNDPGPHLIVCPAS 228 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~---~~~~~~~LIV~P~s 228 (520)
++|..++|+|||..+..++...... .+...+++++.-..
T Consensus 27 ~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5688899999999888777532110 01245677776543
No 175
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=88.30 E-value=1.4 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=21.5
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
.++++|..++|+|||..+-+++..+.
T Consensus 207 ~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999888876654
No 176
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=88.23 E-value=1.2 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=19.3
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
.|++|..++|+|||..+-+++..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999988776653
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.10 E-value=3.8 Score=40.16 Aligned_cols=34 Identities=21% Similarity=0.088 Sum_probs=24.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+.+....|.|||.++..++..+.. .+++++++.-
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~---~g~kVllid~ 141 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAE---LGYKVLIAAA 141 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEeC
Confidence 345567999999998888776643 3567777653
No 178
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=87.95 E-value=3.3 Score=41.30 Aligned_cols=24 Identities=33% Similarity=0.373 Sum_probs=19.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
.+++|..++|+|||..|-++...+
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999887776543
No 179
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.89 E-value=1.1 Score=44.31 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcC-CCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 173 LVGVNFLLLLYRKG-IAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 173 ~~gv~~l~~~~~~~-~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
...+..+......| ....++..++|+|||..+-+++..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34444444333333 23378999999999999988887663
No 180
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=87.78 E-value=2.2 Score=47.15 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=24.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
.++|..++|+|||..|-++...+. +...+++.|
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~---~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIF---GDEESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH---SCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc---CCCcceEEE
Confidence 489999999999999888776652 234454444
No 181
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=87.69 E-value=0.15 Score=48.61 Aligned_cols=24 Identities=29% Similarity=0.283 Sum_probs=20.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
.|++|..++|+|||..|-+++..+
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999999888877644
No 182
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.66 E-value=4.3 Score=39.69 Aligned_cols=40 Identities=15% Similarity=0.119 Sum_probs=27.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHh---CCCCCCEEEEeCCcc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHL---NNDPGPHLIVCPASV 229 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~---~~~~~~~LIV~P~sl 229 (520)
.+++.++|+|||..++.++...... .+..+++++|.-...
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 5789999999999988887643210 112567888877554
No 183
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.53 E-value=8.6 Score=36.40 Aligned_cols=42 Identities=17% Similarity=0.237 Sum_probs=28.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCC---------CCCCEEEEeCCcchhhH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNN---------DPGPHLIVCPASVLENW 233 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~---------~~~~~LIV~P~sll~~W 233 (520)
++|....|+|||..+..++..+. .+ ..++++++.-.....+.
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~~~~~ 83 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDPPTAI 83 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSCHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCCHHHH
Confidence 57888999999998888876553 22 13567777665444443
No 184
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=87.10 E-value=5.3 Score=39.87 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHH-HHHhcC----CCceEE--eCCCCCCHHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLL-LLYRKG----IAGAIL--ADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 169 r~~Q~~gv~~l~-~~~~~~----~~g~IL--ademGlGKTi~aia~l~~l~ 212 (520)
|..++..+..++ .....+ .+.++| ..+.|+|||..+-.++..+.
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 556666665554 433222 234667 79999999998888776553
No 185
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=86.60 E-value=2.5 Score=41.85 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=39.1
Q ss_pred HHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHH
Q 039292 175 GVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWEREL 237 (520)
Q Consensus 175 gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 237 (520)
.+..++..+..| .=+||+..+|.|||.-++.++..... .+.+++++...--..+....+
T Consensus 35 ~LD~~~gGl~~G-~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 35 QLDNYTSGFNKG-SLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp HHHHHHCSBCTT-CEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEESSSCHHHHHHHH
T ss_pred HHHHHhcCCCCC-cEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeCCCCHHHHHHHH
Confidence 445555322222 22689999999999999888876644 567899998865555544443
No 186
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.56 E-value=3.8 Score=40.16 Aligned_cols=40 Identities=23% Similarity=0.244 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHH-hcC-CCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 172 QLVGVNFLLLLY-RKG-IAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 172 Q~~gv~~l~~~~-~~~-~~g~ILademGlGKTi~aia~l~~l 211 (520)
|...+..+.... ..+ ....++..+.|+|||..+-+++..+
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 445555555433 222 1237899999999999887777645
No 187
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=86.52 E-value=0.43 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
..++..++|+|||..+-+++..+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 58999999999999888887765
No 188
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=86.52 E-value=9.3 Score=39.06 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=26.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
++++...|.|||.++..++.++... .+.++++|.-
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~--~G~kVllvd~ 137 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREK--HKKKVLVVSA 137 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT--SCCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEEec
Confidence 4456789999999999999888542 1566777765
No 189
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.44 E-value=7.2 Score=38.41 Aligned_cols=40 Identities=15% Similarity=0.066 Sum_probs=27.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHh---CCCCCCEEEEeCCcc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHL---NNDPGPHLIVCPASV 229 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~---~~~~~~~LIV~P~sl 229 (520)
++++.++|+|||..++.++...... .+..+++++|.-...
T Consensus 125 ~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 125 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp EEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 5789999999999888877642110 113567888877553
No 190
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=85.79 E-value=4.8 Score=39.02 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~ 209 (520)
|+.++..+..++. .+ +.+++..+.|.|||..+-.++.
T Consensus 17 R~~el~~L~~~l~---~~-~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 17 REEESRKLEESLE---NY-PLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CHHHHHHHHHHHH---HC-SEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh---cC-CeEEEECCCcCCHHHHHHHHHH
Confidence 5666666655443 23 4678999999999987766654
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.47 E-value=1.7 Score=39.03 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=25.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
.+++|..++|+|||..+.+++..+.. ...+++++
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~---~~~~~~~~ 88 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK---RNVSSLIV 88 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT---TTCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEE
Confidence 57889999999999998887776642 23455544
No 192
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=85.27 E-value=8.1 Score=37.22 Aligned_cols=32 Identities=28% Similarity=0.299 Sum_probs=23.6
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 192 LADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 192 LademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+....|.|||..+..++..+.. .+++++++.-
T Consensus 103 i~g~~G~GKTT~~~~la~~~~~---~~~~v~l~~~ 134 (295)
T 1ls1_A 103 LVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAA 134 (295)
T ss_dssp EECCTTTTHHHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHHH---cCCeEEEecC
Confidence 4578999999988888776643 3567777654
No 193
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.79 E-value=4.6 Score=49.11 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=41.5
Q ss_pred HHHHHHHH--HHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHH
Q 039292 174 VGVNFLLL--LYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWE 234 (520)
Q Consensus 174 ~gv~~l~~--~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~ 234 (520)
..+.+++. ....+ ...+|+.++|+|||..++.++..... ..+++++|.-.....+|.
T Consensus 718 ~eLD~llggGGl~~G-~lilIaG~PG~GKTtLalqlA~~~a~---~g~~VlyiS~Ees~~ql~ 776 (2050)
T 3cmu_A 718 LSLDIALGAGGLPMG-RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDPIY 776 (2050)
T ss_dssp HHHHHHHSSSSEETT-SEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECTTSCCCHHH
T ss_pred hHHHHHhccCCcCCC-cEEEEEcCCCCCHHHHHHHHHHHHHh---cCCcEEEEECCCcHHHHH
Confidence 34566662 22222 35789999999999999998876643 356899999888888885
No 194
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=84.60 E-value=2.1 Score=44.56 Aligned_cols=88 Identities=16% Similarity=0.202 Sum_probs=55.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcCCCeEEEecCC--------C--chhhh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCPSFSVLQYHGA--------G--RTAYS 258 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v~~~~g~--------~--~~~~~ 258 (520)
..|..-+|+|||+.+.+++.. ..+|+|||||... ..+|..++..|+|.. |..|-.. . .....
T Consensus 17 ~~l~g~~gs~ka~~~a~l~~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp~~e~lpyd~~~p~~~~~~ 89 (483)
T 3hjh_A 17 RLLGELTGAACATLVAEIAER------HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIIS 89 (483)
T ss_dssp EEEECCCTTHHHHHHHHHHHH------SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECCCCCSCTTCSSCCCHHHHH
T ss_pred EEEeCCCchHHHHHHHHHHHH------hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEeCcccccccccCCChHHHH
Confidence 467778999999987766532 3579999999754 677999999998865 5544332 1 11112
Q ss_pred HHHHHHhhcCCCCCccEEEeehhhHhh
Q 039292 259 RELSSLAKAGLPPPFNVLLVCYSLFER 285 (520)
Q Consensus 259 ~~~~~~~~~~~~~~~~vlitty~~l~~ 285 (520)
.++..+.... .....|+|+|...+..
T Consensus 90 ~Rl~~l~~L~-~~~~~ivv~sv~al~~ 115 (483)
T 3hjh_A 90 SRLSTLYQLP-TMQRGVLIVPVNTLMQ 115 (483)
T ss_dssp HHHHHHHHGG-GCCSSEEEEEHHHHHB
T ss_pred HHHHHHHHHH-hCCCCEEEEEHHHHhh
Confidence 2222222211 1234688999887754
No 195
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.18 E-value=5.6 Score=38.96 Aligned_cols=42 Identities=14% Similarity=-0.049 Sum_probs=30.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
.+++.++|+|||..++.++..... .+..+++++|.....+.+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccchhhH
Confidence 468899999999999988876643 223567888887655544
No 196
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=83.87 E-value=1.2 Score=49.14 Aligned_cols=57 Identities=18% Similarity=0.077 Sum_probs=42.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh-CCCCCCEEEEeCCcc
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL-NNDPGPHLIVCPASV 229 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~-~~~~~~~LIV~P~sl 229 (520)
..|-|.|..+|... . +.+++-...|+|||.+.+.-+.++... ......+|+|+.+..
T Consensus 10 ~~Ln~~Q~~av~~~-----~--g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnk 67 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT-----E--GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNK 67 (724)
T ss_dssp TTSCHHHHHHHHCC-----S--SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHH
T ss_pred hhCCHHHHHHHhCC-----C--CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHH
Confidence 36889999999631 2 346677789999999988877777653 234567999998654
No 197
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=82.65 E-value=9.5 Score=38.88 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=25.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
++++...|+|||..+..++..+.. .+++++++.-
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~---~g~~Vllvd~ 134 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKG---KGRRPLLVAA 134 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEeec
Confidence 345678999999998888877643 3567777764
No 198
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=82.57 E-value=3.9 Score=39.53 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=23.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+++....|+|||..+..++..+.. ..+.+++++.-
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~~--~~G~~V~lv~~ 142 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISML--EKHKKIAFITT 142 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH--TTCCCEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH--hcCCEEEEEec
Confidence 345567999999988888776642 12346666653
No 199
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=82.35 E-value=3.8 Score=39.27 Aligned_cols=45 Identities=9% Similarity=0.044 Sum_probs=28.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERE 236 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E 236 (520)
++|+..+|+|||..+..++..+.. ..+.+++++.......++...
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~~~~~~~~r 82 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAED 82 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSSCHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcCCHHHHHHH
Confidence 578889999999888777765543 123377777654333333333
No 200
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=82.30 E-value=42 Score=33.39 Aligned_cols=41 Identities=22% Similarity=0.259 Sum_probs=25.0
Q ss_pred cCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc
Q 039292 185 KGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS 228 (520)
Q Consensus 185 ~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s 228 (520)
.....+++..++|+|||..|-++ +.+ ..+..+|++.|--..
T Consensus 158 ~~~~~vli~Ge~GtGK~~lAr~i-h~~--s~r~~~~fv~v~~~~ 198 (387)
T 1ny5_A 158 CAECPVLITGESGVGKEVVARLI-HKL--SDRSKEPFVALNVAS 198 (387)
T ss_dssp TCCSCEEEECSTTSSHHHHHHHH-HHH--STTTTSCEEEEETTT
T ss_pred CCCCCeEEecCCCcCHHHHHHHH-HHh--cCCCCCCeEEEecCC
Confidence 33356799999999999865433 222 234456766554333
No 201
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=82.29 E-value=14 Score=38.39 Aligned_cols=46 Identities=7% Similarity=-0.033 Sum_probs=33.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWEREL 237 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 237 (520)
.+|+..+|+|||..++.++..... ..+.+++++.-.-...+....+
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~--~~g~~vl~~s~E~s~~~l~~r~ 290 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGT--AMGKKVGLAMLEESVEETAEDL 290 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTT--TSCCCEEEEESSSCHHHHHHHH
T ss_pred EEEeecCCCCchHHHHHHHHHHHH--hcCCcEEEEeccCCHHHHHHHH
Confidence 689999999999999988876632 2256899998765555554443
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=82.25 E-value=4.4 Score=45.36 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=19.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
.+++..++|+|||..|-++...+
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999888877665
No 203
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.22 E-value=8.9 Score=37.19 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=18.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~ 210 (520)
.+++.++|+|||..++.++..
T Consensus 101 ~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 101 TEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999888764
No 204
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=81.55 E-value=10 Score=41.60 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=19.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
.++|..++|+|||..|-++...+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 47899999999999888777655
No 205
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=81.36 E-value=2.5 Score=43.65 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHhcCC---CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHH
Q 039292 170 PYQLVGVNFLLLLYRKGI---AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWER 235 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~---~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~ 235 (520)
...+..+..+......+. +|+||..++|+|||..|-+++..+. ...+++.|....+...|..
T Consensus 43 ~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~----~~~~~~~~~~~~~~~~~~~ 107 (456)
T 2c9o_A 43 ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG----SKVPFCPMVGSEVYSTEIK 107 (456)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHC----TTSCEEEEEGGGGCCSSSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhC----CCceEEEEeHHHHHHHhhh
Confidence 444454444444444432 5799999999999999998887652 1256677766666555443
No 206
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=81.25 E-value=28 Score=31.30 Aligned_cols=34 Identities=21% Similarity=-0.002 Sum_probs=26.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
-+++--..|-|||..|++++.... +.+.+++|+-
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~---g~G~rV~~vQ 63 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAV---GHGKNVGVVQ 63 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHH---HTTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH---HCCCeEEEEE
Confidence 467888999999999999876553 3567888884
No 207
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=80.31 E-value=14 Score=35.64 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
|..++..+.- + .. +.+++..+.|.|||..+-.++..+
T Consensus 18 R~~el~~L~~-l---~~--~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 18 REKEIEKLKG-L---RA--PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp CHHHHHHHHH-T---CS--SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-h---cC--CcEEEECCCCCCHHHHHHHHHHhc
Confidence 4555555443 2 22 457889999999998887776544
No 208
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=80.18 E-value=2.5 Score=49.22 Aligned_cols=51 Identities=22% Similarity=0.113 Sum_probs=39.0
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCP 242 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p 242 (520)
|+|. .|+|||.+.+.-+.++......+.++|+|||.....+-...+....+
T Consensus 6 V~ag-AGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 6 LVGR-SGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEEC-TTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEeC-CCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 4444 99999999998888776655556899999999887776666655544
No 209
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=79.49 E-value=11 Score=36.27 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=24.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
++....|.|||..+..++..+.. .+++++++.-
T Consensus 102 ~i~G~~G~GKTT~~~~la~~~~~---~g~~v~l~~~ 134 (297)
T 1j8m_F 102 MLVGVQGTGKTTTAGKLAYFYKK---KGFKVGLVGA 134 (297)
T ss_dssp EEECSSCSSTTHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEec
Confidence 45568999999988888776643 3566777654
No 210
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=79.31 E-value=12 Score=45.50 Aligned_cols=49 Identities=10% Similarity=0.034 Sum_probs=35.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhc
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWC 241 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 241 (520)
.+++|..++|+|||..|++++.... ..+..++++.....+..-. ...|.
T Consensus 1428 ~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~~~~l~--a~~~G 1476 (2050)
T 3cmu_A 1428 RIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHALDPIY--ARKLG 1476 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSCCCHHH--HHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccccCHHH--HHHcC
Confidence 5689999999999999999987553 3466788888776554433 44443
No 211
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=78.82 E-value=1.3 Score=49.19 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=26.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
+|+||..++|+|||..|=+++.. .+.+++.|....++..|
T Consensus 239 ~GILL~GPPGTGKT~LAraiA~e------lg~~~~~v~~~~l~sk~ 278 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAVANE------TGAFFFLINGPEIMSKL 278 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHHHTT------TTCEEEEEEHHHHHSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHHH------hCCeEEEEEhHHhhccc
Confidence 58999999999999987666532 23445555444444443
No 212
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=78.02 E-value=3 Score=40.56 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.0
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~ 212 (520)
.+++|..++|+|||..+.+++..+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999988887765
No 213
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=76.61 E-value=10 Score=40.97 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=34.7
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV 229 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl 229 (520)
..+...|..++..+..... + -.+|-..-|-|||..+-.++..+ . +.++|.+|+.-
T Consensus 174 ~~~T~dQ~~al~~~~~~~~-~--~~vlta~RGRGKSa~lG~~~a~~---~---~~~~vtAP~~~ 228 (671)
T 2zpa_A 174 GAPQPEQQQLLKQLMTMPP-G--VAAVTAARGRGKSALAGQLISRI---A---GRAIVTAPAKA 228 (671)
T ss_dssp SSCCHHHHHHHHHHTTCCS-E--EEEEEECTTSSHHHHHHHHHHHS---S---SCEEEECSSCC
T ss_pred CCCCHHHHHHHHHHHHhhh-C--eEEEecCCCCCHHHHHHHHHHHH---H---hCcEEECCCHH
Confidence 3677899999988775332 2 24666679999994433333322 1 24688888543
No 214
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=75.15 E-value=16 Score=36.93 Aligned_cols=40 Identities=18% Similarity=0.166 Sum_probs=25.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHH---hCCCCCCEEEEeCCcc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKH---LNNDPGPHLIVCPASV 229 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~---~~~~~~~~LIV~P~sl 229 (520)
.+|+.+.|+|||..+..++..... ..+..+++++|.-...
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~ 223 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT 223 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc
Confidence 568889999999888766533211 0113466788876543
No 215
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=74.56 E-value=4.6 Score=47.22 Aligned_cols=55 Identities=16% Similarity=0.093 Sum_probs=40.1
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC---CCCCEEEEeCC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN---DPGPHLIVCPA 227 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~---~~~~~LIV~P~ 227 (520)
..|.+-|..+|.. ..+.+++....|+|||.+.+.-+..+..... ....+|||+++
T Consensus 9 ~~~t~eQ~~~i~~-------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft 66 (1232)
T 3u4q_A 9 STWTDDQWNAIVS-------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFT 66 (1232)
T ss_dssp -CCCHHHHHHHHC-------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSS
T ss_pred CCCCHHHHHHHhC-------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEecc
Confidence 4788999999852 2245788889999999988876665544322 45679999985
No 216
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=74.55 E-value=44 Score=29.25 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=28.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC--CcchhhHH
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP--ASVLENWE 234 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P--~sll~~W~ 234 (520)
|..-.-|.|||..++.++..+.. .+.++|+|-- ...+..|.
T Consensus 6 v~s~kgG~GKTt~a~~la~~la~---~g~~vlliD~D~~~~~~~~~ 48 (206)
T 4dzz_A 6 FLNPKGGSGKTTAVINIATALSR---SGYNIAVVDTDPQMSLTNWS 48 (206)
T ss_dssp ECCSSTTSSHHHHHHHHHHHHHH---TTCCEEEEECCTTCHHHHHH
T ss_pred EEeCCCCccHHHHHHHHHHHHHH---CCCeEEEEECCCCCCHHHHH
Confidence 44567899999999999988864 3557777753 33344443
No 217
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=72.87 E-value=8.5 Score=40.19 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=25.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
++++..+|+|||..+..++.++.. .+.++++|..
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~---~G~kVllVd~ 137 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQR---KGWKTCLICA 137 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEec
Confidence 445667999999999998887754 2456777776
No 218
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=72.86 E-value=3.4 Score=37.80 Aligned_cols=24 Identities=8% Similarity=0.335 Sum_probs=20.6
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
++.|+..++|+|||..|.+++..+
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 367889999999999998887765
No 219
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=71.13 E-value=5.2 Score=36.29 Aligned_cols=34 Identities=18% Similarity=0.128 Sum_probs=27.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+|.+-..|.|||.+++.++..+.. .+.++|++=|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~---~G~rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKA---AGYRTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHH---TTCCEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---CCCCEEEEcc
Confidence 356678999999999999988865 3567888766
No 220
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.50 E-value=30 Score=41.60 Aligned_cols=54 Identities=11% Similarity=0.071 Sum_probs=37.0
Q ss_pred HHHHHHH--HHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 175 GVNFLLL--LYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 175 gv~~l~~--~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
.+..++. ....+ ..++|+.++|+|||..++.++..... ..++++++.-.....+
T Consensus 719 eLD~lLg~GGl~~G-~lVlI~G~PG~GKTtLal~lA~~aa~---~g~~VlyiS~Ees~~q 774 (1706)
T 3cmw_A 719 SLDIALGAGGLPMG-RIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDP 774 (1706)
T ss_dssp HHHHHTSSSSEETT-SEEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCH
T ss_pred HHHHHhccCCcCCC-ceEEEECCCCCCcHHHHHHHHHHHHH---cCCCeEEEeccchHHH
Confidence 4556653 22223 35789999999999999998876643 3457888876555544
No 221
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=68.78 E-value=4 Score=41.81 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=25.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
++++..+|+|||..+..++..+.. .+.++++|.-
T Consensus 102 I~ivG~~GvGKTTla~~La~~l~~---~G~kVllv~~ 135 (432)
T 2v3c_C 102 ILLVGIQGSGKTTTAAKLARYIQK---RGLKPALIAA 135 (432)
T ss_dssp EEEECCSSSSTTHHHHHHHHHHHH---HHCCEEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEec
Confidence 456678999999999998877754 2456777764
No 222
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=68.56 E-value=14 Score=38.45 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=18.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
.|++|..++|+|||..+=++..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~ 86 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAG 86 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999988766654
No 223
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=67.68 E-value=9.4 Score=35.46 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=19.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
.|++|..++|+|||..+-++...+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHc
Confidence 578999999999998887776543
No 224
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=66.40 E-value=3.5 Score=40.18 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=19.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
++++|..++|+|||..+-++...+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 578999999999998887766533
No 225
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=65.72 E-value=37 Score=30.76 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=24.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
+.|..+.|+|||..+-.++..... ...++.+++.-.....+
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~~~~~--~~~~~~~~~~~~~~~~~ 73 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIYKGAE--EYGEPGVFVTLEERARD 73 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH--HHCCCEEEEESSSCHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH--hCCCeEEEEEccCCHHH
Confidence 567889999999877666532220 12345666665444333
No 226
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=65.68 E-value=50 Score=32.38 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=24.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHh--C-CCCCCEEEEeCCcc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHL--N-NDPGPHLIVCPASV 229 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~--~-~~~~~~LIV~P~sl 229 (520)
..|..+.|+|||..+..++...... . +..++++.|.-...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 4578899999998887776543110 1 11356677766443
No 227
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=65.33 E-value=71 Score=31.02 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=21.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
+.|..+.|+|||..+-.++..+.. ..+.++++.
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~---~~g~V~l~g 164 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKN---HGFSVVIAA 164 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---cCCEEEEEe
Confidence 446778999999776665555432 345555553
No 228
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=64.07 E-value=76 Score=28.10 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=23.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhC---CCCCCEEEEeCCc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLN---NDPGPHLIVCPAS 228 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~---~~~~~~LIV~P~s 228 (520)
..|..+.|+|||..+..++..+.... ...+.++.+....
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 45777899999987766654332100 1244566666544
No 229
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=62.36 E-value=8.5 Score=35.10 Aligned_cols=33 Identities=24% Similarity=0.188 Sum_probs=26.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
|.+...|.|||..++.++..+.. .+.++|+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~---~g~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGD---RGRKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHh---cCCeEEEEeC
Confidence 55677899999999999988864 3567888865
No 230
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=62.21 E-value=8 Score=42.95 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=17.9
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
.+++|..++|+|||..+-++..
T Consensus 239 ~~vLL~Gp~GtGKTtLarala~ 260 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4789999999999987766543
No 231
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=61.59 E-value=38 Score=40.64 Aligned_cols=41 Identities=10% Similarity=0.068 Sum_probs=31.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhh
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLEN 232 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~ 232 (520)
-.+++.++|+|||..++.++..... ..+++++|.-.....+
T Consensus 385 lilI~G~pGsGKTtLaLq~a~~~~~---~G~~vlyis~E~s~~~ 425 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDAEHALDP 425 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEECTTSCCCH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEccCchHH
Confidence 4789999999999999998876643 3568888877655544
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=61.58 E-value=72 Score=33.07 Aligned_cols=32 Identities=13% Similarity=0.189 Sum_probs=21.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
+.|....|+|||..+-.++..+.. ..+.++|+
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~~---~~G~V~l~ 327 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLA 327 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred EEEECCCcccHHHHHHHHHHHhhh---cCCeEEEe
Confidence 346678999999876665555432 35666666
No 233
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=60.95 E-value=9.1 Score=35.41 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=25.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
|.+..-|.|||..++.++..+.. .+.++|+|=-
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~---~g~~VlliD~ 39 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQ---KGKKTVVIDF 39 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred EECCCCCCcHHHHHHHHHHHHHh---CCCcEEEEEC
Confidence 55678899999999999988864 3567888743
No 234
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=60.39 E-value=17 Score=34.44 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 194 DEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 194 demGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
..-|.|||..++.++..+.. .+.++|+|
T Consensus 44 ~KGGvGKTT~a~nLA~~la~---~G~rVlli 71 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDK---LNLKVLMI 71 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHh---CCCeEEEE
Confidence 58899999999999888754 34577775
No 235
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=60.31 E-value=11 Score=35.71 Aligned_cols=23 Identities=22% Similarity=-0.032 Sum_probs=19.9
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
++++|..++|+|||..+.+++..
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhh
Confidence 47889999999999999888764
No 236
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=59.45 E-value=11 Score=35.10 Aligned_cols=33 Identities=21% Similarity=0.108 Sum_probs=26.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
|.+..-|.|||..++.++..+.. .+.++|+|-.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~---~g~~VlliD~ 39 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQ---LGHDVTIVDA 39 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred EECCCCCCCHHHHHHHHHHHHHh---CCCcEEEEEC
Confidence 56778899999999999988864 3567888853
No 237
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=59.45 E-value=11 Score=34.48 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=25.4
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+....-|.|||..++.++..+.. ..+.++|+|=-
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~--~~g~~VlliD~ 42 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQ--EPDIHVLAVDI 42 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTT--STTCCEEEEEC
T ss_pred EECCCCCcchHHHHHHHHHHHHh--CcCCCEEEEEC
Confidence 55677899999999999888743 12667787743
No 238
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=58.97 E-value=14 Score=36.42 Aligned_cols=33 Identities=30% Similarity=0.334 Sum_probs=24.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
.+++|..++|+|||..|-++...+ ..|++.+-.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~------~~~~~~~~~ 84 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLL------DVPFTMADA 84 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT------TCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc------CCCEEEech
Confidence 578999999999999887776543 345555543
No 239
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=58.73 E-value=10 Score=35.46 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=25.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
|.+..-|.|||..++.++..+.. .+.++|+|=.
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~---~G~~VlliD~ 55 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYAR---QGKKVGILDA 55 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred EEcCCCCCCHHHHHHHHHHHHHH---CCCeEEEEeC
Confidence 45678899999999999988865 3567888753
No 240
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=57.52 E-value=1.2e+02 Score=29.72 Aligned_cols=33 Identities=21% Similarity=0.177 Sum_probs=22.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
+.|....|+|||..+-.++..+.. ..+.++++.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~~---~~G~V~l~g 192 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLKN---EGTKVLMAA 192 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHH---TTCCEEEEC
T ss_pred EEEEcCCCChHHHHHHHHHhhccc---cCCEEEEec
Confidence 346778999999877666655532 346666654
No 241
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=57.08 E-value=14 Score=34.06 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=20.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~ 213 (520)
.|-+-++|.|||+.+++++..+..
T Consensus 8 ~Itgt~t~vGKT~vt~~L~~~l~~ 31 (228)
T 3of5_A 8 FIIGTDTEVGKTYISTKLIEVCEH 31 (228)
T ss_dssp EEEESSSSSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Confidence 366778999999999999998865
No 242
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=56.96 E-value=3.9 Score=45.29 Aligned_cols=40 Identities=20% Similarity=0.288 Sum_probs=29.0
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENW 233 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W 233 (520)
+|+||..++|+|||..|-+++..+ ..+++.|....++..|
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~------~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANEC------QANFISIKGPELLTMW 551 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTT------TCEEEECCHHHHHTTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHh------CCceEEeccchhhccc
Confidence 589999999999999887776532 3456656555566555
No 243
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=56.84 E-value=11 Score=36.64 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=27.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
++....-|.|||.+|++++..+.. .+.++|+|-.-
T Consensus 17 ~v~sgKGGvGKTTvA~~LA~~lA~---~G~rVLlvD~D 51 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISAATALWMAR---SGKKTLVISTD 51 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---TTCCEEEEECC
T ss_pred EEEeCCCCchHHHHHHHHHHHHHH---CCCcEEEEeCC
Confidence 466778999999999999988865 36678888653
No 244
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=56.26 E-value=13 Score=35.78 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=24.8
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
|.+-..|.|||.+++.++..+.. .+.++|+|-
T Consensus 109 vts~kgG~GKTtva~nLA~~lA~---~G~rVLLID 140 (299)
T 3cio_A 109 ITGATPDSGKTFVSSTLAAVIAQ---SDQKVLFID 140 (299)
T ss_dssp EEESSSSSCHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EECCCCCCChHHHHHHHHHHHHh---CCCcEEEEE
Confidence 34557899999999999988864 356788874
No 245
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=56.08 E-value=12 Score=36.85 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=26.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
++....-|.|||.+|++++..+.. .+.++|+|--
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~---~G~rVLlvD~ 62 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAE---KGLKVVIVST 62 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHH---SSCCEEEEEC
T ss_pred EEEeCCCCccHHHHHHHHHHHHHH---CCCeEEEEeC
Confidence 467788999999999999988865 3567887763
No 246
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=55.96 E-value=10 Score=38.36 Aligned_cols=29 Identities=31% Similarity=0.319 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 177 NFLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 177 ~~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
.-++...-.|.++||+|- .+|+|||.++.
T Consensus 130 ~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 130 GQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp HHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred HHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 346666668989999885 89999998874
No 247
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=55.21 E-value=15 Score=42.45 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=53.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCc-chhhHHHHHHHhcCCCeEEEecCCC----------chhhhH
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPAS-VLENWERELKKWCPSFSVLQYHGAG----------RTAYSR 259 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~s-ll~~W~~E~~~~~p~~~v~~~~g~~----------~~~~~~ 259 (520)
.|..-+|+|||+.+.+++. ...+|+|||||.. ...+|..+|..|+ +..|..|-... ......
T Consensus 21 ~l~G~~gs~ka~~~a~l~~------~~~~p~lvv~~~~~~A~~l~~el~~f~-~~~V~~fP~~~~~~y~~~~p~~~i~~~ 93 (1151)
T 2eyq_A 21 LLGELTGAACATLVAEIAE------RHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWETLPYDSFSPHQDIISS 93 (1151)
T ss_dssp CBCCCCTTHHHHHHHHHHH------SSSSEEEEEESSHHHHHHHHHHHGGGC-SSCEEECCCCCSCTTCSSCCCHHHHHH
T ss_pred EEeCCchHHHHHHHHHHHH------hhCCCEEEEeCCHHHHHHHHHHHHhhc-CCcEEEecccccCcccccCCChHHHHH
Confidence 4555699999997766542 1246899999975 4677999999997 54555543321 111222
Q ss_pred HHHHHhhcCCCCCccEEEeehhhHhh
Q 039292 260 ELSSLAKAGLPPPFNVLLVCYSLFER 285 (520)
Q Consensus 260 ~~~~~~~~~~~~~~~vlitty~~l~~ 285 (520)
++..+..... ...+|+||+...+..
T Consensus 94 Rl~~L~~L~~-~~~~viV~~~~al~~ 118 (1151)
T 2eyq_A 94 RLSTLYQLPT-MQRGVLIVPVNTLMQ 118 (1151)
T ss_dssp HHHHHHHGGG-CCSEEEEEEHHHHTB
T ss_pred HHHHHHHHHh-CCCCEEEEeHHHHhc
Confidence 2333322211 124799999887754
No 248
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=54.72 E-value=12 Score=33.73 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=29.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe--CCcchhhHHH
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC--PASVLENWER 235 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~--P~sll~~W~~ 235 (520)
+....-|.|||..++.++..+.. .+ ++|+|= |...+..|..
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~---~g-~VlliD~D~q~~~~~~~~ 47 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLAL---QG-ETLLIDGDPNRSATGWGK 47 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHT---TS-CEEEEEECTTCHHHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHh---cC-CEEEEECCCCCCHHHHhc
Confidence 55677899999999999888854 23 777763 5555556654
No 249
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=54.40 E-value=16 Score=34.03 Aligned_cols=34 Identities=21% Similarity=0.107 Sum_probs=24.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
.|.+-++|.|||+.+++++..+... +.++...=|
T Consensus 25 ~ItgT~t~vGKT~vs~gL~~~L~~~---G~~V~~fKP 58 (242)
T 3qxc_A 25 FISATNTNAGKTTCARLLAQYCNAC---GVKTILLKP 58 (242)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEECC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHhC---CCceEEEee
Confidence 4677789999999999999988652 334444433
No 250
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=54.17 E-value=14 Score=35.00 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=23.8
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 192 LADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 192 LademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
..-..|.|||..++.++..+.. .+.++|+|-
T Consensus 88 ts~kgG~GKTt~a~nLA~~lA~---~G~rVLLID 118 (271)
T 3bfv_A 88 TSEAPGAGKSTIAANLAVAYAQ---AGYKTLIVD 118 (271)
T ss_dssp ECSSTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred ECCCCCCcHHHHHHHHHHHHHh---CCCeEEEEe
Confidence 3456899999999999888864 456777773
No 251
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=53.94 E-value=12 Score=35.53 Aligned_cols=22 Identities=41% Similarity=0.463 Sum_probs=18.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
.|++|..++|+|||..+=+++.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 5789999999999987766554
No 252
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=53.81 E-value=11 Score=33.97 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=17.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~ 210 (520)
.++-..+|+|||..|+.++..
T Consensus 8 ~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 467888999999998887644
No 253
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=53.57 E-value=10 Score=37.57 Aligned_cols=29 Identities=28% Similarity=0.297 Sum_probs=22.6
Q ss_pred HHHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 177 NFLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 177 ~~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
.-++...-.|.++||+|- .+|+|||.++.
T Consensus 74 ~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 74 GQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp HHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred HHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 346666667889999875 79999998874
No 254
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=53.28 E-value=9.5 Score=35.86 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~ 213 (520)
.|-+-++|.|||+.+++++..+..
T Consensus 30 ~Itgt~t~vGKT~vt~gL~~~l~~ 53 (251)
T 3fgn_A 30 VVTGTGTGVGKTVVCAALASAARQ 53 (251)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHH
Confidence 466778999999999999998865
No 255
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=53.27 E-value=10 Score=37.51 Aligned_cols=30 Identities=27% Similarity=0.301 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 176 VNFLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 176 v~~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
+.-++...-.|.++||+|- .+|+|||.++.
T Consensus 74 v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 74 IRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp HHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 3446666678889999875 89999998874
No 256
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=53.23 E-value=12 Score=35.00 Aligned_cols=30 Identities=30% Similarity=0.407 Sum_probs=23.7
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
|.+..-|.|||..++.++..+. .+.++|+|
T Consensus 32 v~s~kGGvGKTT~a~~LA~~la----~g~~Vlli 61 (267)
T 3k9g_A 32 IASIKGGVGKSTSAIILATLLS----KNNKVLLI 61 (267)
T ss_dssp ECCSSSSSCHHHHHHHHHHHHT----TTSCEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHH----CCCCEEEE
Confidence 4567889999999999988774 35677777
No 257
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=52.36 E-value=19 Score=34.38 Aligned_cols=24 Identities=33% Similarity=0.252 Sum_probs=19.9
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
.+++|..++|+|||..|-++...+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999887776544
No 258
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=52.35 E-value=10 Score=37.67 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=21.1
Q ss_pred HHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 179 LLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 179 l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
|+...-.|.++||+|- .+|+|||.++.
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyTM~ 123 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYTMM 123 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEEeC
Confidence 4445557889999886 89999998764
No 259
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=52.24 E-value=16 Score=34.98 Aligned_cols=33 Identities=9% Similarity=0.126 Sum_probs=25.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
+|.+-..|.|||.+++.++..+.. .+.++|+|-
T Consensus 96 ~vts~kgG~GKTtva~nLA~~lA~---~G~rVLLID 128 (286)
T 3la6_A 96 MMTGVSPSIGMTFVCANLAAVISQ---TNKRVLLID 128 (286)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHHT---TTCCEEEEE
T ss_pred EEECCCCCCcHHHHHHHHHHHHHh---CCCCEEEEe
Confidence 355668899999999999888753 356788874
No 260
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=51.57 E-value=11 Score=34.48 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=23.2
Q ss_pred eCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 193 ADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 193 ademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
...-|.|||..++.++..+.. .+.++|+|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~---~g~~Vlli 34 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMAS---DYDKIYAV 34 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTT---TCSCEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHH---CCCeEEEE
Confidence 567899999999999988853 35677777
No 261
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=51.55 E-value=16 Score=35.81 Aligned_cols=42 Identities=19% Similarity=0.217 Sum_probs=29.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC--CcchhhHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP--ASVLENWE 234 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P--~sll~~W~ 234 (520)
++....-|.|||.++++++..+.. .+.++|+|-- ..-+..|.
T Consensus 19 ~~~sgkGGvGKTt~a~~lA~~la~---~g~~vllid~D~~~~l~~~l 62 (334)
T 3iqw_A 19 IFVGGKGGVGKTTTSCSLAIQLAK---VRRSVLLLSTDPAHNLSDAF 62 (334)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTT---SSSCEEEEECCSSCHHHHHH
T ss_pred EEEeCCCCccHHHHHHHHHHHHHh---CCCcEEEEECCCCCChhHHh
Confidence 567778999999999999887743 4567777754 44444443
No 262
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=51.45 E-value=9.8 Score=39.69 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=18.2
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
++++|..++|+|||..|-++..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 4789999999999987766554
No 263
>4ehx_A Tetraacyldisaccharide 4'-kinase; membrane protein, lipid A, P-loop, P-loop containing nucleoside triphosphate hydrolase; HET: EPE; 1.90A {Aquifex aeolicus} PDB: 4ehy_A* 4ehw_A
Probab=50.84 E-value=46 Score=32.24 Aligned_cols=17 Identities=41% Similarity=0.327 Sum_probs=14.2
Q ss_pred CCCCHHHHHHHHHHHHH
Q 039292 196 MGLGKTIQAITYLMLLK 212 (520)
Q Consensus 196 mGlGKTi~aia~l~~l~ 212 (520)
=|+|||=.++.++..+.
T Consensus 47 GGTGKTP~vi~L~~~L~ 63 (315)
T 4ehx_A 47 GGSGKTSFVMYLADLLK 63 (315)
T ss_dssp SCCSHHHHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHHh
Confidence 48999999999887764
No 264
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=50.59 E-value=13 Score=37.29 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=22.6
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
-++...-.|+++||+|- .+|+|||.++.
T Consensus 106 ~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 134 (376)
T 2rep_A 106 MLVQSALDGYPVCIFAYGQTGSGKTFTME 134 (376)
T ss_dssp HHHHGGGGTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHhcCCCceEEEEeCCCCCCCceEee
Confidence 46666678889999875 89999998764
No 265
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=50.15 E-value=14 Score=35.96 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=26.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
++.....|.|||.++++++..+.. .+.++|+|--
T Consensus 22 ~v~sgkGGvGKTTva~~LA~~lA~---~G~rVllvD~ 55 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSCSLAIQMSK---VRSSVLLIST 55 (329)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT---SSSCEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHH---CCCeEEEEEC
Confidence 467788999999999999888753 4567777743
No 266
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=49.91 E-value=13 Score=37.04 Aligned_cols=28 Identities=29% Similarity=0.209 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
-|+...-.|.++||+|- .+|+|||.++.
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 34455557888998876 89999998764
No 267
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=49.69 E-value=15 Score=34.85 Aligned_cols=42 Identities=12% Similarity=0.095 Sum_probs=29.2
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe--C-CcchhhHHH
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC--P-ASVLENWER 235 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~--P-~sll~~W~~ 235 (520)
|.+..-|.|||..++.++..+.. .+.++|+|= | ..-+..|..
T Consensus 9 v~s~KGGvGKTT~a~nLA~~La~---~G~~VlliD~D~~q~~l~~~l~ 53 (286)
T 2xj4_A 9 VGNEKGGAGKSTIAVHLVTALLY---GGAKVAVIDLDLRQRTSARFFE 53 (286)
T ss_dssp ECCSSSCTTHHHHHHHHHHHHHH---TTCCEEEEECCTTTCHHHHHHH
T ss_pred EEcCCCCCCHHHHHHHHHHHHHH---CCCcEEEEECCCCCCCHHHHhC
Confidence 44567899999999999988865 355777763 3 344555554
No 268
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=48.70 E-value=13 Score=36.41 Aligned_cols=29 Identities=24% Similarity=0.192 Sum_probs=21.7
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAIT 206 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~aia 206 (520)
-++...-.|.++||+|- .+|+|||.+...
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceEecc
Confidence 34455557888988876 799999987653
No 269
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=48.61 E-value=11 Score=37.09 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=20.5
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQA 204 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~a 204 (520)
-|+...-.|.++||+|- .+|+|||.++
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 34444557888999885 8999999876
No 270
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=48.49 E-value=15 Score=36.32 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
-++...-.|.++||+|- .+|+|||.++.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTMM 111 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHHT
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEEe
Confidence 34555557889999884 89999998764
No 271
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=48.44 E-value=13 Score=37.04 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 177 NFLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 177 ~~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
.-|+...-.|.++||+|- .+|+|||.++.
T Consensus 90 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 119 (373)
T 2wbe_C 90 SPLIEEVLNGYNCTVFAYGQTGTGKTHTMV 119 (373)
T ss_dssp HHHHHHHHHTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHHhCCceEEEEeecCCCCCcceecc
Confidence 344455557888988876 89999998764
No 272
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=48.36 E-value=24 Score=30.73 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=22.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
++|...+|+|||.++-.+...+.. .++++.++
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~---~~~~~~~~ 47 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQK---EGYRVEVL 47 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh---cCCeEEEe
Confidence 467888999999988877766643 23444444
No 273
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=48.32 E-value=13 Score=37.12 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=22.3
Q ss_pred HHHHHHHhcCCCceEEeC-CCCCCHHHHHHH
Q 039292 177 NFLLLLYRKGIAGAILAD-EMGLGKTIQAIT 206 (520)
Q Consensus 177 ~~l~~~~~~~~~g~ILad-emGlGKTi~aia 206 (520)
.-|+...-.|.++||+|- .+|+|||.++..
T Consensus 91 ~plv~~~l~G~n~tifAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 91 RPLVDSVLQGFNGTIFAYGQTGTGKTYTMEG 121 (372)
T ss_dssp HHHHHHHHTTCCEEEEEEESTTSSHHHHHTB
T ss_pred HHHHHHHhCCCeeeEEeecCCCCCCCEeEec
Confidence 344555557889999876 899999987643
No 274
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=47.91 E-value=13 Score=32.27 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=18.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
.++|...+|+|||.++-.+...+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999888776654
No 275
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=47.88 E-value=12 Score=34.85 Aligned_cols=32 Identities=28% Similarity=0.279 Sum_probs=24.6
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
|.+..-|.|||..++.++..+.. .+.++|+|=
T Consensus 11 v~s~kGGvGKTt~a~~LA~~la~---~g~~VlliD 42 (257)
T 1wcv_1 11 LANQKGGVGKTTTAINLAAYLAR---LGKRVLLVD 42 (257)
T ss_dssp ECCSSCCHHHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EEeCCCCchHHHHHHHHHHHHHH---CCCCEEEEE
Confidence 34467899999999999988865 356788874
No 276
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=47.39 E-value=14 Score=36.52 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCCceEEeC-CCCCCHHHHH
Q 039292 177 NFLLLLYRKGIAGAILAD-EMGLGKTIQA 204 (520)
Q Consensus 177 ~~l~~~~~~~~~g~ILad-emGlGKTi~a 204 (520)
.-|+...-.|.++||+|- .+|+|||.+.
T Consensus 73 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 73 QPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 345555557889999885 8999999876
No 277
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=47.36 E-value=16 Score=37.47 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=21.4
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
-|+...-.|+++||+|- .+|+|||.++.
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM~ 155 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEee
Confidence 34445557889999886 79999998774
No 278
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=47.30 E-value=13 Score=36.96 Aligned_cols=29 Identities=21% Similarity=0.275 Sum_probs=22.0
Q ss_pred HHHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 177 NFLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 177 ~~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
.-++...-.|.++||+|- .+|+|||.+..
T Consensus 70 ~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 70 KPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp HHHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 345555557888998875 79999998764
No 279
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=47.26 E-value=14 Score=36.83 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
-|+...-.|.++||+|- .+|+|||.+..
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 34455557888988876 79999998764
No 280
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=47.07 E-value=1.2e+02 Score=28.92 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=21.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
+.+....|+|||..+-.++..+. ...+.++++.
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~---~~~g~V~l~g 137 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQ---NLGKKVMFCA 137 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH---TTTCCEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHH---hcCCEEEEEe
Confidence 34567899999987766655543 2356666654
No 281
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=46.87 E-value=2.2e+02 Score=27.87 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=17.2
Q ss_pred cCCCceEEeCCCCCCHHHHHHHH
Q 039292 185 KGIAGAILADEMGLGKTIQAITY 207 (520)
Q Consensus 185 ~~~~g~ILademGlGKTi~aia~ 207 (520)
.....+++..++|+||+..|-++
T Consensus 150 ~~~~~vli~GesGtGKe~lAr~i 172 (368)
T 3dzd_A 150 KSKAPVLITGESGTGKEIVARLI 172 (368)
T ss_dssp TSCSCEEEECCTTSSHHHHHHHH
T ss_pred ccchhheEEeCCCchHHHHHHHH
Confidence 34356889999999999866543
No 282
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=46.59 E-value=14 Score=36.61 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=21.3
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
-++...-.|.++||+|- .+|+|||.++.
T Consensus 96 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 96 PILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp HHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred HHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 34455557888998875 89999998764
No 283
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=46.37 E-value=2e+02 Score=27.32 Aligned_cols=33 Identities=21% Similarity=0.169 Sum_probs=22.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
.|....|+|||..+-.++..+.. ..+.+++..-
T Consensus 104 ~lvG~nGsGKTTll~~Lag~l~~---~~g~V~l~g~ 136 (302)
T 3b9q_A 104 MIVGVNGGGKTTSLGKLAHRLKN---EGTKVLMAAG 136 (302)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHH---TTCCEEEECC
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH---cCCeEEEEee
Confidence 46678999999877666555532 3566666643
No 284
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=46.29 E-value=22 Score=36.56 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.3
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~ 212 (520)
+++||..++|+|||..+-+++..+.
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999988877663
No 285
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=46.17 E-value=17 Score=35.94 Aligned_cols=37 Identities=14% Similarity=0.272 Sum_probs=27.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPA 227 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~ 227 (520)
++....-|.|||.++++++..+.. ...+.++|+|-.-
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~-~~~G~rVLLvD~D 57 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMAL-SQPNKQFLLISTD 57 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH-HCTTSCEEEEECC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHH-hcCCCeEEEEECC
Confidence 466778999999999999888751 0346678888664
No 286
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=45.94 E-value=9.7 Score=38.03 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=20.6
Q ss_pred HHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 179 LLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 179 l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
++...-.|.++||+|- .+|+|||.++.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTIY 98 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEeec
Confidence 4444457888998875 89999998764
No 287
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=45.81 E-value=16 Score=35.42 Aligned_cols=31 Identities=13% Similarity=0.075 Sum_probs=24.0
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 192 LADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 192 LademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
++..=|.|||.+++-+...|.. .+.++|+|=
T Consensus 53 IaGKGGVGKTTtavNLA~aLA~---~GkkVllID 83 (314)
T 3fwy_A 53 VYGKGGIGKSTTSSNLSAAFSI---LGKRVLQIG 83 (314)
T ss_dssp EECSTTSSHHHHHHHHHHHHHH---TTCCEEEEE
T ss_pred EECCCccCHHHHHHHHHHHHHH---CCCeEEEEe
Confidence 4567799999999999988865 456777773
No 288
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=45.79 E-value=15 Score=36.45 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=21.2
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
-++...-.|.++||+|- .+|+|||.++.
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyTM~ 122 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYTMM 122 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceEec
Confidence 34444557889999885 89999998764
No 289
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=45.74 E-value=13 Score=36.83 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=20.9
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
-|+...-.|.++||+|- .+|+|||.+..
T Consensus 80 plv~~~l~G~n~tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 80 PLIDAVLEGFNSTIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHhCCCceeEEeecCCCCCCCEEee
Confidence 34444457888998875 79999998764
No 290
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=45.71 E-value=12 Score=37.90 Aligned_cols=29 Identities=24% Similarity=0.107 Sum_probs=22.0
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAIT 206 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~aia 206 (520)
-|+...-.|+++||+|- .+|+|||.++.+
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHHHC
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEeec
Confidence 34555557888988876 899999988754
No 291
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=45.67 E-value=21 Score=37.85 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=27.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+++....|.|||.++++++..+.. .+.++|+|--
T Consensus 11 ~~~sgkGGvGKTT~a~~lA~~lA~---~G~rVLlvd~ 44 (589)
T 1ihu_A 11 LFFTGKGGVGKTSISCATAIRLAE---QGKRVLLVST 44 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEEEC
T ss_pred EEEeCCCcCHHHHHHHHHHHHHHH---CCCcEEEEEC
Confidence 567788999999999999988865 3567888754
No 292
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=45.13 E-value=16 Score=36.47 Aligned_cols=28 Identities=25% Similarity=0.269 Sum_probs=21.1
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
-|+...-.|.++||+|- .+|+|||.++.
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm~ 108 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTMM 108 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEee
Confidence 34444557888999876 79999998764
No 293
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=44.83 E-value=14 Score=36.32 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=20.1
Q ss_pred HHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 179 LLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 179 l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
++...-.|.++||+|- .+|+|||.++.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEEe
Confidence 3344447888988875 89999998764
No 294
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=44.83 E-value=24 Score=32.48 Aligned_cols=32 Identities=22% Similarity=0.172 Sum_probs=25.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
+++....|.|||..+..++..+. .+.+++||.
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~----~g~~v~vvd 48 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLE----DNYKVAYVN 48 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT----TTSCEEEEE
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH----CCCeEEEEe
Confidence 56788999999999988887763 455777776
No 295
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=44.67 E-value=40 Score=34.11 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=30.1
Q ss_pred CcHHHHHHHHHHHHHHhcCCCc-eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAG-AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g-~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
+.+-+...+..++ ... +| +++..++|+|||...-+++..+ ....+.++++
T Consensus 151 ~~~~~~~~L~~l~---~~~-ggii~I~GpnGSGKTTlL~allg~l---~~~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLI---KRP-HGIILVTGPTGSGKSTTLYAGLQEL---NSSERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHH---TSS-SEEEEEECSTTSCHHHHHHHHHHHH---CCTTSCEEEE
T ss_pred CCHHHHHHHHHHH---Hhc-CCeEEEECCCCCCHHHHHHHHHhhc---CCCCCEEEEe
Confidence 4455555565552 222 34 4688999999998877766654 2234444444
No 296
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=44.53 E-value=19 Score=33.56 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=22.6
Q ss_pred eCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 193 ADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 193 ademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
+..-|.|||..++.++..+.. .+.++|+|
T Consensus 7 s~KGGvGKTT~a~nLA~~la~---~G~~Vlli 35 (269)
T 1cp2_A 7 YGKGGIGKSTTTQNLTSGLHA---MGKTIMVV 35 (269)
T ss_dssp EECTTSSHHHHHHHHHHHHHT---TTCCEEEE
T ss_pred ecCCCCcHHHHHHHHHHHHHH---CCCcEEEE
Confidence 457899999999999988853 35677776
No 297
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=44.30 E-value=16 Score=36.38 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=16.5
Q ss_pred hcCCCceEEe-CCCCCCHHHHHHH
Q 039292 184 RKGIAGAILA-DEMGLGKTIQAIT 206 (520)
Q Consensus 184 ~~~~~g~ILa-demGlGKTi~aia 206 (520)
..|.+++|+| ..+|+|||.++..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHB
T ss_pred cCCceeEEEeeCCCCCCCCEEEec
Confidence 3466665665 5899999987754
No 298
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=44.16 E-value=23 Score=33.49 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=22.9
Q ss_pred eCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 193 ADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 193 ademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
+..-|.|||..++.++..+.. .+.++|+|
T Consensus 8 s~KGGvGKTT~a~nLA~~La~---~G~rVlli 36 (289)
T 2afh_E 8 YGKGGIGKSTTTQNLVAALAE---MGKKVMIV 36 (289)
T ss_dssp EECTTSSHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred eCCCcCcHHHHHHHHHHHHHH---CCCeEEEE
Confidence 457899999999999988865 35577776
No 299
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=43.91 E-value=14 Score=36.48 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=20.4
Q ss_pred HHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 179 LLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 179 l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
|+...-.|.++||+|- .+|+|||.++.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 3344447888998876 89999998764
No 300
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=43.64 E-value=25 Score=33.52 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=23.7
Q ss_pred EeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 192 LADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 192 LademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
++..-|.|||..++.++..+.. .+.++|+|
T Consensus 46 v~~KGGvGKTT~a~nLA~~La~---~G~~Vlli 75 (307)
T 3end_A 46 VYGKGGIGKSTTSSNLSAAFSI---LGKRVLQI 75 (307)
T ss_dssp EECSTTSSHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred EECCCCccHHHHHHHHHHHHHH---CCCeEEEE
Confidence 3468999999999999988865 35577777
No 301
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=42.95 E-value=18 Score=31.42 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=18.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
+++...+|+|||.++-.+...+
T Consensus 6 I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 6 VVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5788899999999887776655
No 302
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=42.85 E-value=15 Score=37.25 Aligned_cols=29 Identities=28% Similarity=0.188 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 177 NFLLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 177 ~~l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
.-++...-.|.++||+|- .+|+|||.+..
T Consensus 128 ~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 128 SPLIQSALDGYNICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHT
T ss_pred HHHHHHHHCCCceEEEEecCCCCCCeeEec
Confidence 345555558889999885 89999998764
No 303
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=42.83 E-value=23 Score=37.01 Aligned_cols=37 Identities=22% Similarity=0.170 Sum_probs=23.1
Q ss_pred cHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHH
Q 039292 169 KPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 169 r~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~ 209 (520)
-+.+...+.+.. ..| .++++..++|+|||...-+++.
T Consensus 246 ~~~~l~~l~~~v---~~g-~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 246 PSGVLAYLWLAI---EHK-FSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp CHHHHHHHHHHH---HTT-CCEEEEESTTSSHHHHHHHHGG
T ss_pred CHHHHHHHHHHH---hCC-CEEEEECCCCCCHHHHHHHHHh
Confidence 344444444333 445 3578999999999976655443
No 304
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=42.51 E-value=18 Score=30.69 Aligned_cols=22 Identities=23% Similarity=-0.041 Sum_probs=17.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4778889999998877665543
No 305
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=42.50 E-value=23 Score=34.92 Aligned_cols=36 Identities=17% Similarity=0.256 Sum_probs=26.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP 226 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P 226 (520)
+++...-|.|||.+|++++..+... ..+.++|+|--
T Consensus 21 ~~~~gkGGvGKTt~a~~lA~~la~~-~~g~~vllid~ 56 (348)
T 3io3_A 21 IFVGGKGGVGKTTTSSSVAVQLALA-QPNEQFLLIST 56 (348)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHH-CTTSCEEEEEC
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHh-cCCCeEEEEEC
Confidence 5666789999999999998877510 34567777754
No 306
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=42.31 E-value=18 Score=32.03 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=18.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
.++|...+|+|||..+-.+...+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 46789999999999887776554
No 307
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=42.20 E-value=23 Score=36.25 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.0
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
+|++|...+|+|||..|-+++..+
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l 74 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHc
Confidence 578999999999999887776544
No 308
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=41.47 E-value=14 Score=33.44 Aligned_cols=22 Identities=23% Similarity=0.546 Sum_probs=18.8
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
.++++..++|+|||-.|+.++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999988764
No 309
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=41.24 E-value=34 Score=31.85 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=18.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~ 212 (520)
++|..-+|+|||.++-.+...+.
T Consensus 7 Ivl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 7 IILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 57888999999999888776653
No 310
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=40.80 E-value=20 Score=30.99 Aligned_cols=23 Identities=22% Similarity=0.213 Sum_probs=18.5
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
-++|...+|+|||.++-.+...+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 47889999999999887766544
No 311
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=40.74 E-value=39 Score=33.53 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=30.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWER 235 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~ 235 (520)
+.+++...+|+|||..+-.++..+. ....+++|+=|..-...+.+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~ 80 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREY---MQGSRVIIIDPEREYKEMCR 80 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEEESSCCSHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHH---HCCCEEEEEeCCcCHHHHHH
Confidence 3468888999999987766665443 24567888888755444433
No 312
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=40.72 E-value=18 Score=31.49 Aligned_cols=22 Identities=23% Similarity=0.163 Sum_probs=17.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5788899999999887766544
No 313
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=40.70 E-value=19 Score=33.51 Aligned_cols=22 Identities=23% Similarity=0.069 Sum_probs=18.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
.++...+|+|||..|..++..+
T Consensus 4 i~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHhcC
Confidence 4788899999999888877544
No 314
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=40.46 E-value=15 Score=36.90 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=20.4
Q ss_pred HHHHHhcCCCceEEeC-CCCCCHHHHHH
Q 039292 179 LLLLYRKGIAGAILAD-EMGLGKTIQAI 205 (520)
Q Consensus 179 l~~~~~~~~~g~ILad-emGlGKTi~ai 205 (520)
|+...-.|.++||+|- .+|+|||.++.
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 3444457888988875 89999998764
No 315
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=40.45 E-value=17 Score=33.61 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=18.1
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
.|++|..++|+|||..+-+++.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~ 71 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAG 71 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999987766654
No 316
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=40.33 E-value=17 Score=31.35 Aligned_cols=21 Identities=19% Similarity=0.080 Sum_probs=16.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~ 210 (520)
++|...||+|||..+=.+...
T Consensus 6 i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 578899999999887666543
No 317
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=40.20 E-value=47 Score=32.15 Aligned_cols=42 Identities=24% Similarity=0.156 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHh---cCCCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 170 PYQLVGVNFLLLLYR---KGIAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~---~~~~g~ILademGlGKTi~aia~l~~l 211 (520)
...+..+...+.... .....++|..++|+|||..+-+++..+
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 455666666554321 122457899999999998776666544
No 318
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=39.92 E-value=16 Score=36.64 Aligned_cols=29 Identities=24% Similarity=0.107 Sum_probs=21.3
Q ss_pred HHHHHHhcCCCceEEeC-CCCCCHHHHHHH
Q 039292 178 FLLLLYRKGIAGAILAD-EMGLGKTIQAIT 206 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILad-emGlGKTi~aia 206 (520)
-|+...-.|.++||+|- .+|+|||.++..
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHHC-
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEecc
Confidence 34445557888888875 899999988755
No 319
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=39.75 E-value=19 Score=31.18 Aligned_cols=22 Identities=23% Similarity=0.292 Sum_probs=17.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4677889999999887777655
No 320
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=39.28 E-value=34 Score=36.17 Aligned_cols=41 Identities=15% Similarity=0.260 Sum_probs=28.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHHHHhCCC-CCCEEEEeCCc
Q 039292 188 AGAILADEMGLGKTIQAITYLMLLKHLNND-PGPHLIVCPAS 228 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l~~~~~~-~~~~LIV~P~s 228 (520)
..++++..+|+|||...-+++..+...... .-.+++|=|..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 357999999999999888888777543222 23456666765
No 321
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=39.09 E-value=28 Score=35.14 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=27.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL 230 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll 230 (520)
.+++...+|+|||..+-.++..+.. .+.+++|+=|..-.
T Consensus 55 h~~i~G~tGsGKs~~~~~li~~~~~---~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 55 HLLVNGATGTGKSVLLRELAYTGLL---RGDRMVIVDPNGDM 93 (437)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHH---TTCEEEEEEETTHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH---CCCcEEEEeCCCch
Confidence 4688888999999876555554433 34678888887544
No 322
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=38.57 E-value=22 Score=31.93 Aligned_cols=22 Identities=27% Similarity=0.237 Sum_probs=17.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 7 I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 7 MVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5788899999999887766544
No 323
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=38.53 E-value=23 Score=31.09 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=17.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHhc
Confidence 4677789999999887766554
No 324
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=38.50 E-value=24 Score=30.08 Aligned_cols=23 Identities=30% Similarity=0.265 Sum_probs=17.9
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
-++|...+|+|||.++-.+...+
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 36788899999999887665544
No 325
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=38.48 E-value=11 Score=36.61 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=19.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
++++|..++|+|||..|-++...+
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~ 69 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALL 69 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHS
T ss_pred ceEEEECCCCccHHHHHHHHHHhC
Confidence 468999999999999887776543
No 326
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=38.39 E-value=22 Score=32.38 Aligned_cols=23 Identities=30% Similarity=0.248 Sum_probs=18.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
-++|...+|+|||.++-.+...+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36788899999999988777654
No 327
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=38.34 E-value=19 Score=31.94 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=19.7
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
.|+++..+.|+|||..|++++.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5789999999999999998875
No 328
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=37.90 E-value=19 Score=30.46 Aligned_cols=18 Identities=22% Similarity=0.198 Sum_probs=14.6
Q ss_pred eEEeCCCCCCHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITY 207 (520)
Q Consensus 190 ~ILademGlGKTi~aia~ 207 (520)
.+|...+|+|||.++-.+
T Consensus 4 I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 467888999999877655
No 329
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=37.86 E-value=26 Score=34.64 Aligned_cols=33 Identities=9% Similarity=0.013 Sum_probs=25.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
++....-|.|||..|+.++..+.. .+.++|+|-
T Consensus 147 av~s~KGGvGKTT~a~nLA~~La~---~g~rVlliD 179 (373)
T 3fkq_A 147 IFTSPCGGVGTSTVAAACAIAHAN---MGKKVFYLN 179 (373)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHH---HTCCEEEEE
T ss_pred EEECCCCCChHHHHHHHHHHHHHh---CCCCEEEEE
Confidence 355668999999999999988865 256788875
No 330
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=37.74 E-value=24 Score=30.59 Aligned_cols=22 Identities=18% Similarity=0.173 Sum_probs=17.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688899999999886665443
No 331
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=37.60 E-value=48 Score=41.84 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV 229 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl 229 (520)
+++..-+--+.+....+ .|++|..++|+|||...=.++..+....+....+.++-|.++
T Consensus 907 ~~~~~K~~ql~e~~~~r-~gvmlvGptgsGKTt~~~~La~al~~l~~~~~~~~~inpk~~ 965 (2695)
T 4akg_A 907 EEFLKKCMQFYYMQKTQ-QALILVGKAGCGKTATWKTVIDAMAIFDGHANVVYVIDTKVL 965 (2695)
T ss_dssp HHHHHHHHHHHHHHHHC-SEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEEEECTTTS
T ss_pred HHHHHHHHHHHHHHHhc-ceEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 44444444455554445 689999999999997665555555433333334556677543
No 332
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=37.58 E-value=18 Score=35.68 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=24.0
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
|....-|.|||..++.++..+.. .+.++|+|
T Consensus 6 v~s~KGGvGKTT~a~nLA~~LA~---~G~rVLlI 36 (361)
T 3pg5_A 6 FFNNKGGVGKTTLSTNVAHYFAL---QGKRVLYV 36 (361)
T ss_dssp BCCSSCCHHHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred EEcCCCCCcHHHHHHHHHHHHHh---CCCcEEEE
Confidence 34456799999999999888854 45678887
No 333
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=37.51 E-value=24 Score=30.48 Aligned_cols=22 Identities=32% Similarity=0.270 Sum_probs=17.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
.+|...+|+|||.++-.+...+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678899999999887665443
No 334
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=37.06 E-value=25 Score=30.19 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=17.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
.+|...+|+|||..+-.+...+
T Consensus 7 i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 7 IVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHc
Confidence 5788999999999887766544
No 335
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=36.85 E-value=23 Score=30.71 Aligned_cols=22 Identities=18% Similarity=0.176 Sum_probs=17.1
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 9 I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 9 VFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678889999999887665543
No 336
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=36.24 E-value=24 Score=30.77 Aligned_cols=23 Identities=17% Similarity=0.085 Sum_probs=18.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
-++|...+|+|||.++-.+...+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36788899999999887766544
No 337
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=36.13 E-value=26 Score=30.29 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=17.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 5788899999999887766544
No 338
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=35.98 E-value=27 Score=29.66 Aligned_cols=22 Identities=18% Similarity=0.155 Sum_probs=17.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 5 I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788889999999887666544
No 339
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=35.79 E-value=23 Score=30.31 Aligned_cols=20 Identities=20% Similarity=0.238 Sum_probs=15.8
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
+++...+|+|||.++-.+..
T Consensus 5 I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHh
Confidence 57888999999988766543
No 340
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=35.78 E-value=21 Score=35.11 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=17.7
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
++|...||+|||-.++.++.
T Consensus 43 IvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 43 LVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEECSTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999999988774
No 341
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=35.57 E-value=26 Score=30.90 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=17.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
-++|...+|+|||..+=.+...+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36889999999998876655443
No 342
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=35.56 E-value=23 Score=38.64 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCceEEe-CCCCCCHHHHH
Q 039292 178 FLLLLYRKGIAGAILA-DEMGLGKTIQA 204 (520)
Q Consensus 178 ~l~~~~~~~~~g~ILa-demGlGKTi~a 204 (520)
-++...-.|.++||+| ..+|+|||.+.
T Consensus 453 ~~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 453 QLIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCceEEEEccCCCCCchhhcc
Confidence 4555666888999998 58999999876
No 343
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=35.50 E-value=24 Score=31.79 Aligned_cols=22 Identities=14% Similarity=0.069 Sum_probs=17.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 8 I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 8 VMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788899999999887776544
No 344
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=35.15 E-value=22 Score=33.35 Aligned_cols=23 Identities=30% Similarity=0.281 Sum_probs=18.4
Q ss_pred CceEEeCCCCCCHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~ 210 (520)
.|++|..++|+|||..+-+++..
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcChHHHHHHHHHHH
Confidence 46899999999999877666543
No 345
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=34.45 E-value=29 Score=30.60 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=17.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 23 I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 23 VLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788899999999887666544
No 346
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=34.41 E-value=30 Score=29.28 Aligned_cols=22 Identities=23% Similarity=0.045 Sum_probs=16.8
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4677789999999887666544
No 347
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=34.37 E-value=56 Score=28.45 Aligned_cols=24 Identities=13% Similarity=-0.033 Sum_probs=18.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~ 213 (520)
..++...|+|||..+..++..+..
T Consensus 7 i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhhHh
Confidence 456668999999988888877643
No 348
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=34.24 E-value=88 Score=32.44 Aligned_cols=64 Identities=25% Similarity=0.253 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC----CCCCCEEEEeC----CcchhhHHHHHHH
Q 039292 174 VGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN----NDPGPHLIVCP----ASVLENWERELKK 239 (520)
Q Consensus 174 ~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~----~~~~~~LIV~P----~sll~~W~~E~~~ 239 (520)
.+|..|...-+ |.+.+|+++ .|+|||..++..|....... ....-++|++- .+.+..+.+++..
T Consensus 151 raID~l~Pigr-GQR~~I~g~-~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~ 222 (510)
T 2ck3_A 151 KAVDSLVPIGR-GQRELIIGD-RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTD 222 (510)
T ss_dssp HHHHHHSCCBT-TCBCEEEES-TTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHH
T ss_pred eeecccccccc-CCEEEEecC-CCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHh
Confidence 45666654333 445556665 99999999887776543310 11223344433 3345556666654
No 349
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=33.78 E-value=20 Score=38.76 Aligned_cols=12 Identities=33% Similarity=0.456 Sum_probs=10.1
Q ss_pred cEEEEeCccccC
Q 039292 303 SCVLMDEAHALK 314 (520)
Q Consensus 303 ~~vIiDEaH~ik 314 (520)
.+||+||+|++.
T Consensus 327 ~llVlDEah~~~ 338 (664)
T 1c4o_A 327 FLVFLDESHVTV 338 (664)
T ss_dssp CEEEEETHHHHH
T ss_pred cEEEEecccccH
Confidence 488999999874
No 350
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=33.56 E-value=28 Score=30.40 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=17.3
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 15 I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 15 IFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788899999999887666544
No 351
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=33.54 E-value=30 Score=30.44 Aligned_cols=22 Identities=23% Similarity=0.138 Sum_probs=18.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 5678889999999987776655
No 352
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=33.47 E-value=36 Score=37.24 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.3
Q ss_pred CCceEEeCCCCCCHHHHHHHHHHHH
Q 039292 187 IAGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 187 ~~g~ILademGlGKTi~aia~l~~l 211 (520)
.+++||..++|+|||..|-+++..+
T Consensus 201 ~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999988887766
No 353
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=33.32 E-value=30 Score=31.14 Aligned_cols=22 Identities=23% Similarity=0.134 Sum_probs=16.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
.||-..+|+|||.||--+...+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3677889999999987666543
No 354
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=33.28 E-value=1.2e+02 Score=26.24 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHH-HHHHHhcCCCeEEEecCCCch-hhhHHHHHHhhcCCCCCcc
Q 039292 197 GLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWE-RELKKWCPSFSVLQYHGAGRT-AYSRELSSLAKAGLPPPFN 274 (520)
Q Consensus 197 GlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~-~E~~~~~p~~~v~~~~g~~~~-~~~~~~~~~~~~~~~~~~~ 274 (520)
...|.-..+.++. .....+++||.|+..-...+. ..|.. .+..+..++|.... .....+..+... ...
T Consensus 29 ~~~K~~~L~~ll~----~~~~~~k~lVF~~~~~~~~~l~~~L~~--~g~~~~~lhg~~~~~~r~~~~~~f~~g----~~~ 98 (185)
T 2jgn_A 29 ESDKRSFLLDLLN----ATGKDSLTLVFVETKKGADSLEDFLYH--EGYACTSIHGDRSQRDREEALHQFRSG----KSP 98 (185)
T ss_dssp GGGHHHHHHHHHH----HC-CCSCEEEEESCHHHHHHHHHHHHH--TTCCEEEEC--------CHHHHHHHHT----SSS
T ss_pred cHHHHHHHHHHHH----hcCCCCeEEEEECCHHHHHHHHHHHHH--cCCceEEEeCCCCHHHHHHHHHHHHcC----CCe
Confidence 3456543333332 233567899999975444433 33433 25678888886433 223334444332 467
Q ss_pred EEEeehhhH
Q 039292 275 VLLVCYSLF 283 (520)
Q Consensus 275 vlitty~~l 283 (520)
|+|+| +.+
T Consensus 99 vLvaT-~~~ 106 (185)
T 2jgn_A 99 ILVAT-AVA 106 (185)
T ss_dssp EEEEE-C--
T ss_pred EEEEc-Chh
Confidence 88888 443
No 355
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=33.11 E-value=33 Score=34.14 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=24.3
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhC---CCCCCEEEE
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLN---NDPGPHLIV 224 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~---~~~~~~LIV 224 (520)
|....-|.|||.+++.++..+.... ..+.++|+|
T Consensus 113 v~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlli 149 (398)
T 3ez2_A 113 ISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVI 149 (398)
T ss_dssp ECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEE
T ss_pred EEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 4556889999999999988875310 235677776
No 356
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=33.02 E-value=1.6e+02 Score=24.91 Aligned_cols=57 Identities=14% Similarity=0.126 Sum_probs=34.0
Q ss_pred CCCCEEEEeCCcchhh-HHHHHHHhcCCCeEEEecCCCchhhhH-HHHHHhhcCCCCCccEEEee
Q 039292 217 DPGPHLIVCPASVLEN-WERELKKWCPSFSVLQYHGAGRTAYSR-ELSSLAKAGLPPPFNVLLVC 279 (520)
Q Consensus 217 ~~~~~LIV~P~sll~~-W~~E~~~~~p~~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~vlitt 279 (520)
..+++||.|+..-... ....|... +..+..++|......+. .+..+.. +...|+|+|
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~g~~~~~~R~~~~~~f~~----g~~~vLvaT 91 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD--GHQVSLLSGELTVEQRASIIQRFRD----GKEKVLITT 91 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT--TCCEEEECSSCCHHHHHHHHHHHHT----TSCSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEe
Confidence 4578999999754433 33444442 46788888875544333 3333332 246788888
No 357
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=32.97 E-value=31 Score=30.75 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=16.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4678889999999886665443
No 358
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=32.86 E-value=18 Score=32.53 Aligned_cols=41 Identities=17% Similarity=0.080 Sum_probs=23.0
Q ss_pred CccEEEEeCccccCCcc---hHHHHHHHHHhh--hcCcEEEEeccC
Q 039292 301 RWSCVLMDEAHALKDKN---SYRWKNLMSVAR--NANQRLMLTGTP 341 (520)
Q Consensus 301 ~~~~vIiDEaH~ikn~~---s~~~~~l~~l~~--~~~~rl~LTgTP 341 (520)
.-.+|||||||.+-+.. ....+.+..+.. ....-++|.|.|
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~ 132 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQG 132 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESC
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCC
Confidence 46789999999983221 111122333311 223367888888
No 359
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=32.77 E-value=47 Score=34.59 Aligned_cols=40 Identities=10% Similarity=0.210 Sum_probs=26.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHHHHhCCCCC-CEEEEeCCc
Q 039292 189 GAILADEMGLGKTIQAITYLMLLKHLNNDPG-PHLIVCPAS 228 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l~~~~~~~~-~~LIV~P~s 228 (520)
.++++..+|+|||...-+++..+........ .++++=|..
T Consensus 169 HlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 169 HLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp SEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 4689999999999888777765544222222 344455554
No 360
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=32.62 E-value=32 Score=29.79 Aligned_cols=22 Identities=32% Similarity=0.246 Sum_probs=16.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 3567779999999887766655
No 361
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=32.11 E-value=43 Score=38.18 Aligned_cols=50 Identities=20% Similarity=0.105 Sum_probs=32.7
Q ss_pred ccCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC
Q 039292 165 QPVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN 216 (520)
Q Consensus 165 ~~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~ 216 (520)
.++++..=..|.+.|.... ....+|+..|.|+|||..+=-++.++....+
T Consensus 124 pPHIfaiA~~AY~~M~~~~--~nQsIiiSGESGAGKTestK~im~yLa~~~~ 173 (1052)
T 4anj_A 124 PPHVFAIADKAFRDMKVLK--LSQSIIVSGESGAGKTENTKFVLRYLTESYG 173 (1052)
T ss_dssp CSCHHHHHHHHHHHHHHHT--CCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHhC--CCceEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence 3444444555666665432 2246889999999999888777777655433
No 362
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=32.02 E-value=30 Score=30.96 Aligned_cols=22 Identities=27% Similarity=0.098 Sum_probs=16.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4677789999999887666544
No 363
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=31.96 E-value=1.4e+02 Score=30.79 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcC-CCeEEEecCCCchhhhH-HHHHHhhcCCCCCccEEE
Q 039292 201 TIQAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCP-SFSVLQYHGAGRTAYSR-ELSSLAKAGLPPPFNVLL 277 (520)
Q Consensus 201 Ti~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p-~~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~vli 277 (520)
....+..+..........+++||.|+..- .......+...++ +..+..+||......+. .+..+... ..+|+|
T Consensus 322 ~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g----~~~vLv 397 (563)
T 3i5x_A 322 IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD----ESGILV 397 (563)
T ss_dssp HHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC----SSEEEE
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcC----CCCEEE
Confidence 33344444433333456778999999754 4445556666555 77888899875444333 34444332 467888
Q ss_pred eeh
Q 039292 278 VCY 280 (520)
Q Consensus 278 tty 280 (520)
+|-
T Consensus 398 aT~ 400 (563)
T 3i5x_A 398 CTD 400 (563)
T ss_dssp ECG
T ss_pred Ecc
Confidence 874
No 364
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=31.78 E-value=33 Score=31.24 Aligned_cols=22 Identities=18% Similarity=0.178 Sum_probs=17.2
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
.||...+|+|||.||--+...+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999987665543
No 365
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=31.55 E-value=26 Score=34.21 Aligned_cols=23 Identities=26% Similarity=0.195 Sum_probs=18.8
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
-++|+..||+|||..+..++..+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 36899999999999988877543
No 366
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=31.50 E-value=33 Score=29.89 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=16.6
Q ss_pred ceEEeCCCCCCHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~ 209 (520)
-++|...||+|||.++-.+..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 368899999999988766554
No 367
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=31.15 E-value=32 Score=30.91 Aligned_cols=22 Identities=27% Similarity=0.117 Sum_probs=17.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 8 I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 8 LILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5677889999999887766544
No 368
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=31.10 E-value=28 Score=34.26 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=18.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++++..+|+|||..+..++..+
T Consensus 10 I~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 10 IVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcCcHHHHHHHHHHHc
Confidence 5789999999999988877644
No 369
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=31.04 E-value=32 Score=33.63 Aligned_cols=22 Identities=18% Similarity=-0.026 Sum_probs=18.7
Q ss_pred ceEEeCCCCCCHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~ 210 (520)
..++..++|+|||..++.++..
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 3588999999999999888764
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=30.59 E-value=36 Score=29.55 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=17.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~ 212 (520)
++|...+|+|||.++-.+...+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 35667799999999887776553
No 371
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=30.50 E-value=1.6e+02 Score=24.64 Aligned_cols=61 Identities=13% Similarity=0.272 Sum_probs=35.7
Q ss_pred CCCCEEEEeCCcch-hhHHHHHHHhcCCCeEEEecCCCchhhhH-HHHHHhhcCCCCCccEEEeehhhHh
Q 039292 217 DPGPHLIVCPASVL-ENWERELKKWCPSFSVLQYHGAGRTAYSR-ELSSLAKAGLPPPFNVLLVCYSLFE 284 (520)
Q Consensus 217 ~~~~~LIV~P~sll-~~W~~E~~~~~p~~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~vlitty~~l~ 284 (520)
..+++||.|+..-. ......|... +..+..++|......+. .+..+.. +...|+|+| +.+.
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~----g~~~vlv~T-~~~~ 96 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL--GYPCDKIHGGMIQEDRFDVMNEFKR----GEYRYLVAT-DVAA 96 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEC-GGGT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHHc----CCCeEEEEC-Chhh
Confidence 45689999997543 3344445443 56788888875443333 3333332 246788888 4443
No 372
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=30.42 E-value=2e+02 Score=24.42 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=35.9
Q ss_pred CCCCEEEEeCCcchhh-HHHHHHHhcCCCeEEEecCCCchhhh-HHHHHHhhcCCCCCccEEEeehhhH
Q 039292 217 DPGPHLIVCPASVLEN-WERELKKWCPSFSVLQYHGAGRTAYS-RELSSLAKAGLPPPFNVLLVCYSLF 283 (520)
Q Consensus 217 ~~~~~LIV~P~sll~~-W~~E~~~~~p~~~v~~~~g~~~~~~~-~~~~~~~~~~~~~~~~vlitty~~l 283 (520)
..+++||.|+..-... ....|... +..+..++|......+ ..+..+.. +...|+|+| +.+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~hg~~~~~~r~~~~~~f~~----g~~~vLvaT-~~~ 91 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ--NFPAIAIHRGMPQEERLSRYQQFKD----FQRRILVAT-NLF 91 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHT----TSCSEEEES-SCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc--CCCEEEEECCCCHHHHHHHHHHHHC----CCCcEEEEC-Cch
Confidence 4578999999754433 44445443 5677888887544333 33333332 246888888 443
No 373
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=30.32 E-value=27 Score=33.29 Aligned_cols=20 Identities=25% Similarity=0.257 Sum_probs=16.7
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
+||+..+|+|||..+-.++.
T Consensus 36 ivl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 68999999999988766654
No 374
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=29.87 E-value=37 Score=30.64 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=16.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4677889999999887665544
No 375
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=29.78 E-value=34 Score=30.19 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=18.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~ 212 (520)
++|...+|+|||.++-.+...+.
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 56788899999999887776553
No 376
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=29.54 E-value=1.4e+02 Score=31.07 Aligned_cols=74 Identities=14% Similarity=0.115 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhCCCCCCEEEEeCCcc-hhhHHHHHHHhcC-CCeEEEecCCCchhhh-HHHHHHhhcCCCCCccEEEee
Q 039292 203 QAITYLMLLKHLNNDPGPHLIVCPASV-LENWERELKKWCP-SFSVLQYHGAGRTAYS-RELSSLAKAGLPPPFNVLLVC 279 (520)
Q Consensus 203 ~aia~l~~l~~~~~~~~~~LIV~P~sl-l~~W~~E~~~~~p-~~~v~~~~g~~~~~~~-~~~~~~~~~~~~~~~~vlitt 279 (520)
..+..+...........++||.|+..- ...+...|...++ +..+..+||......+ ..+..+... ...|+|+|
T Consensus 273 ~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g----~~~vLVaT 348 (579)
T 3sqw_A 273 AAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKD----ESGILVCT 348 (579)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHC----SSEEEEEC
T ss_pred HHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcC----CCeEEEEc
Confidence 344444333333456778999999754 4556666766654 7788889987554333 334444332 46788877
Q ss_pred h
Q 039292 280 Y 280 (520)
Q Consensus 280 y 280 (520)
-
T Consensus 349 ~ 349 (579)
T 3sqw_A 349 D 349 (579)
T ss_dssp G
T ss_pred c
Confidence 4
No 377
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=29.14 E-value=31 Score=30.78 Aligned_cols=20 Identities=25% Similarity=0.218 Sum_probs=15.6
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
++|...+|+|||.++-.+..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 46778899999998766543
No 378
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=29.10 E-value=28 Score=31.42 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.2
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
++|...+|+|||.++-.+..
T Consensus 10 I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 10 AVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67888999999998766554
No 379
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=29.02 E-value=96 Score=29.03 Aligned_cols=49 Identities=10% Similarity=-0.080 Sum_probs=34.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhc
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWC 241 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~ 241 (520)
.++...+|+|||+.++.|+..-.. .+.++++++-.-...+..+.+..|.
T Consensus 24 ~li~g~p~~~~~~l~~qfl~~g~~---~Ge~~~~~~~~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 24 LIHEEDASSRGKDILFYILSRKLK---SDNLVGMFSISYPLQLIIRILSRFG 72 (260)
T ss_dssp EEEECSGGGCHHHHHHHHHHHHHH---TTCEEEEEECSSCHHHHHHHHHHTT
T ss_pred EEEEeCCCccHHHHHHHHHHHHHH---CCCcEEEEEEeCCHHHHHHHHHHcC
Confidence 355568999999888888875543 4667888887666666666665553
No 380
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=28.96 E-value=31 Score=30.32 Aligned_cols=20 Identities=20% Similarity=0.205 Sum_probs=15.7
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
++|...+|+|||.++-.+..
T Consensus 18 I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 18 IFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56788999999988765553
No 381
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=28.38 E-value=22 Score=30.68 Aligned_cols=21 Identities=29% Similarity=0.259 Sum_probs=12.7
Q ss_pred eEEeCCCCCCHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~ 210 (520)
++|...+|+|||.++-.+...
T Consensus 8 I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 8 IWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp EEEECCC----CHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 578889999999988666543
No 382
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=28.13 E-value=35 Score=33.99 Aligned_cols=40 Identities=23% Similarity=0.201 Sum_probs=27.0
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe-CCcchhhH
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC-PASVLENW 233 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~-P~sll~~W 233 (520)
++...-|.|||.++++++..+.. .+.++|+|. |..-+..|
T Consensus 6 ~~~gkGG~GKTt~a~~la~~la~---~g~~vllvd~~~~~l~~~ 46 (374)
T 3igf_A 6 TFLGKSGVARTKIAIAAAKLLAS---QGKRVLLAGLAEPVLPLL 46 (374)
T ss_dssp EEECSBHHHHHHHHHHHHHHHHH---TTCCEEEEECSCSHHHHH
T ss_pred EEeCCCCCcHHHHHHHHHHHHHH---CCCCeEEEeCCCCChHHh
Confidence 45556799999999999887754 244566554 55555544
No 383
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=28.11 E-value=28 Score=30.51 Aligned_cols=20 Identities=20% Similarity=0.225 Sum_probs=15.8
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
++|...+|+|||.++=.+..
T Consensus 7 I~l~G~~GsGKsT~~~~L~~ 26 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIME 26 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 56788899999998766554
No 384
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=27.99 E-value=33 Score=33.33 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLML 210 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~ 210 (520)
.+++.++|+|||..++.++..
T Consensus 13 i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCccCHHHHHHHHHHh
Confidence 578999999999998887754
No 385
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=27.58 E-value=61 Score=34.15 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=25.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEE
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIV 224 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV 224 (520)
++.....|.|||..+++++..+.. .+.++|+|
T Consensus 330 ~~~~~~~g~Gktt~a~~lA~~l~~---~g~~vllv 361 (589)
T 1ihu_A 330 IMLMGKGGVGKTTMAAAIAVRLAD---MGFDVHLT 361 (589)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH---TTCCEEEE
T ss_pred EEEecCCCCChhhHHHHHHHHHHH---CCCcEEEE
Confidence 466788999999999999988865 34577776
No 386
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=27.53 E-value=61 Score=35.69 Aligned_cols=46 Identities=22% Similarity=0.106 Sum_probs=28.8
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHh
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHL 214 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~ 214 (520)
.++..=..|.+.|... .....+|+..|.|+|||..+=-++.++...
T Consensus 122 HifaiA~~Ay~~m~~~--~~nQsIiiSGESGAGKTe~tK~i~~yla~~ 167 (784)
T 2v26_A 122 HVFAIADKAFRDMKVL--KLSQSIIVSGESGAGKTENTKFVLRYLTES 167 (784)
T ss_dssp CHHHHHHHHHHHHHHH--TCCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc--CCCcEEEEcCCCCCCceehHHHHHHHHHhh
Confidence 3333333455555533 222467889999999998877777666543
No 387
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=27.52 E-value=36 Score=33.14 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=17.3
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
++++.++|+|||..++.++.
T Consensus 6 i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCcCCHHHHHHHHHH
Confidence 57899999999998888765
No 388
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=27.33 E-value=79 Score=27.89 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=18.2
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
.-+++....|+|||..+-.++..+
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 346777889999998777776654
No 389
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=27.01 E-value=66 Score=34.88 Aligned_cols=42 Identities=17% Similarity=0.149 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC
Q 039292 173 LVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN 216 (520)
Q Consensus 173 ~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~ 216 (520)
..|.+.|... .....+|+..|.|+|||..+=-++.++....+
T Consensus 82 ~~Ay~~m~~~--~~nQsIiisGESGAGKTe~tK~i~~yla~~~~ 123 (697)
T 1lkx_A 82 NDAYRSMRQS--QENQCVIISGESGAGKTEASKKIMQFLTFVSS 123 (697)
T ss_dssp HHHHHHHHHH--CCCEEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhc--CCCcEEEecCCCCCCchhhHHHHHHHHHhhcC
Confidence 3444445432 22245788999999999888777777766444
No 390
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=26.93 E-value=41 Score=29.68 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=18.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~ 212 (520)
++|...+|+|||.++=.+...+.
T Consensus 12 I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 12 IVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 56788899999998877776553
No 391
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=26.71 E-value=36 Score=30.15 Aligned_cols=21 Identities=19% Similarity=0.230 Sum_probs=16.3
Q ss_pred ceEEeCCCCCCHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~ 209 (520)
-.+|...+|+|||.++=.++.
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367889999999987766554
No 392
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=26.69 E-value=74 Score=35.05 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=30.5
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN 216 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~ 216 (520)
+++..=..|.+.|+.. .....+|+..|.|+|||..+=-++.++....+
T Consensus 138 HifaiA~~Ay~~m~~~--~~nQsIiisGESGAGKTe~tK~i~~yla~~~~ 185 (795)
T 1w7j_A 138 HIFAVAEEAYKQMARD--ERNQSIIVSGESGAGKTVSAKYAMRYFATVSG 185 (795)
T ss_dssp CHHHHHHHHHHHHHHH--TCCEEEEEECSTTSSHHHHHHHHHHHHHHHTC
T ss_pred cHhHHHHHHHHHhHhc--CCCeEEEEeCCCCCCcchHHHHHHHHHHhhcC
Confidence 3333333455555543 22246788899999999888777777765444
No 393
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=26.68 E-value=39 Score=42.59 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=19.5
Q ss_pred CCCceEEeCCCCCCHHHHHHHHHH
Q 039292 186 GIAGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 186 ~~~g~ILademGlGKTi~aia~l~ 209 (520)
+..++||..++|+|||..|-.++.
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~ 1289 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALR 1289 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHh
Confidence 336899999999999998766654
No 394
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=26.61 E-value=47 Score=28.27 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=15.4
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
++|...+|+|||..+=.+..
T Consensus 11 i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 56788999999987655543
No 395
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=26.51 E-value=46 Score=30.55 Aligned_cols=22 Identities=23% Similarity=0.191 Sum_probs=17.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++-.+...+
T Consensus 32 I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 32 YIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999887666433
No 396
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=26.40 E-value=1.3e+02 Score=31.21 Aligned_cols=61 Identities=20% Similarity=0.218 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC----CcchhhHHHHHHHh
Q 039292 174 VGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP----ASVLENWERELKKW 240 (520)
Q Consensus 174 ~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P----~sll~~W~~E~~~~ 240 (520)
.+|..|...- +|.+.+|+++ .|+|||..++..|.... ...-++|++- .+.+..+.+++...
T Consensus 151 raID~l~Pig-rGQR~~Ifg~-~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~ 215 (502)
T 2qe7_A 151 KAIDSMIPIG-RGQRELIIGD-RQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQH 215 (502)
T ss_dssp HHHHHSSCCB-TTCBCEEEEC-SSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred eecccccccc-cCCEEEEECC-CCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhC
Confidence 4555554332 3445556665 99999999887775432 2332334443 33455566666553
No 397
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=26.29 E-value=77 Score=32.85 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=17.4
Q ss_pred CCCceEEeCCCCCCHHHHHHHHHH
Q 039292 186 GIAGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 186 ~~~g~ILademGlGKTi~aia~l~ 209 (520)
|.+.+|+++ .|+|||..++..|.
T Consensus 163 GQR~~Ifg~-~g~GKT~Lal~~I~ 185 (507)
T 1fx0_A 163 GQRELIIGD-RQTGKTAVATDTIL 185 (507)
T ss_dssp TCBCBEEES-SSSSHHHHHHHHHH
T ss_pred CCEEEEecC-CCCCccHHHHHHHH
Confidence 445556666 99999999887775
No 398
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=26.20 E-value=79 Score=34.75 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=30.3
Q ss_pred cCCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC
Q 039292 166 PVLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN 215 (520)
Q Consensus 166 ~~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~ 215 (520)
+.++..=..|.+.|+.. .....+|+..|.|+|||..+=-++.++....
T Consensus 152 PHifaiA~~Ay~~m~~~--~~nQsIiiSGESGAGKTe~tK~im~yla~v~ 199 (783)
T 4db1_A 152 PHIFSISDNAYQYMLTD--RENQSILITGESGAGKTVNTKRVIQYFAVIA 199 (783)
T ss_dssp CCHHHHHHHHHHHHHHH--TCCEEEEEECSTTSSHHHHHHHHHHHHHHHS
T ss_pred chhhHHHHHHHHHHHhh--CCCceEEEeCCCCCCCchHHHHHHHhhhhhc
Confidence 34444444455555533 2224678899999999988777777665543
No 399
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=26.16 E-value=77 Score=35.14 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN 216 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~ 216 (520)
.++..=..|.+.|+.. .....+|+..|.|+|||..+=-++.++....+
T Consensus 151 HifaiA~~Ay~~m~~~--~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~ 198 (837)
T 1kk8_A 151 HLFSVADNAYQNMVTD--RENQSCLITGESGAGKTENTKKVIMYLAKVAC 198 (837)
T ss_dssp CHHHHHHHHHHHHHHH--TSEEEEEEECSTTSSHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHhc--CCCcEEEEeCCCCCCchhhHHHHHHHHHHhcc
Confidence 3333333455555543 22235778899999999888777777765443
No 400
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=26.11 E-value=1.4e+02 Score=25.92 Aligned_cols=14 Identities=14% Similarity=0.285 Sum_probs=10.6
Q ss_pred CccEEEEeCccccC
Q 039292 301 RWSCVLMDEAHALK 314 (520)
Q Consensus 301 ~~~~vIiDEaH~ik 314 (520)
..++|||||.+...
T Consensus 115 ~~~~lilDei~~~~ 128 (202)
T 2w58_A 115 KVPVLMLDDLGAEA 128 (202)
T ss_dssp HSSEEEEEEECCC-
T ss_pred CCCEEEEcCCCCCc
Confidence 35799999997754
No 401
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=26.07 E-value=42 Score=28.47 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=15.2
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
.+|...+|+|||..+=.+..
T Consensus 7 i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57888899999987655443
No 402
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=26.00 E-value=41 Score=33.88 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=18.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++++..+|+|||..++.++..+
T Consensus 5 i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEECcchhhHHHHHHHHHHHC
Confidence 4688899999999998887655
No 403
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=25.75 E-value=2.9e+02 Score=22.97 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=34.0
Q ss_pred CCCCEEEEeCCcc-hhhHHHHHHHhcCCCeEEEecCCCchhhhH-HHHHHhhcCCCCCccEEEee
Q 039292 217 DPGPHLIVCPASV-LENWERELKKWCPSFSVLQYHGAGRTAYSR-ELSSLAKAGLPPPFNVLLVC 279 (520)
Q Consensus 217 ~~~~~LIV~P~sl-l~~W~~E~~~~~p~~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~vlitt 279 (520)
..+++||.|+..- +......|... +..+..++|......+. .+..+.. +...|+|+|
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~~~~~~~~~~r~~~~~~f~~----g~~~vlv~T 87 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND--KFTVSAIYSDLPQQERDTIMKEFRS----GSSRILIST 87 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT--TCCEEEECTTSCHHHHHHHHHHHHT----TSCSEEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHc----CCCEEEEEc
Confidence 4578999999644 33344445443 46778888875444333 3333332 246888888
No 404
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=25.66 E-value=1.3e+02 Score=29.26 Aligned_cols=33 Identities=15% Similarity=0.094 Sum_probs=23.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEe
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVC 225 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~ 225 (520)
+++...+|.|||..+..++..+.. .+.+++||.
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l~~---~g~kV~vi~ 114 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHLIE---RGHRVAVLA 114 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh---CCCceEEEe
Confidence 556778999999988888776643 234555543
No 405
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=25.57 E-value=49 Score=29.38 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=18.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~ 212 (520)
++|...+|+|||.++-.+...+.
T Consensus 28 i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 28 IWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 45778899999998877766553
No 406
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=25.48 E-value=97 Score=39.79 Aligned_cols=61 Identities=18% Similarity=0.215 Sum_probs=39.5
Q ss_pred CcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcc
Q 039292 168 LKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASV 229 (520)
Q Consensus 168 Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sl 229 (520)
.-|.|..=+--|.+....+ .|++|..++|+|||..-=.++.++....+.....-++-|.++
T Consensus 888 ~~~~~v~KviQLye~~~vR-hGvmlVGp~gsGKTt~~~~L~~al~~l~~~~~~~~~iNPKai 948 (3245)
T 3vkg_A 888 TKQEWVEKILQLHQILNIN-HGVMMVGPSGGGKTTSWEVYLEAIEQVDNIKSEAHVMDPKAI 948 (3245)
T ss_dssp CCHHHHHHHHHHHHHHTTC-SEEEEECSSSSSHHHHHHHHHHHHTTTTTCEEEEEEECTTTS
T ss_pred cCHHHHHHHHHHHHHHHhe-eeEEEECCCCCCHHHHHHHHHHHHHHhhCCCceEEEECCCCC
Confidence 3456666666666666655 689999999999997654555555333233334567788655
No 407
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=25.16 E-value=83 Score=31.03 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=17.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...||+|||..+-+++..+
T Consensus 27 i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 27 VILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 6889999999998876665544
No 408
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=25.09 E-value=68 Score=32.31 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHHHHhcCC
Q 039292 171 YQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWERELKKWCPS 243 (520)
Q Consensus 171 ~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~~~~~p~ 243 (520)
--..+|..|.... +|.+++|+++ .|+|||..+-.++...... ...-.+|++ ++.+=.+|...+...
T Consensus 161 tGiraID~l~Pig-rGQR~lIfg~-~g~GKT~Ll~~Ia~~i~~~--~~dv~~V~~---lIGER~~EV~d~~~~ 226 (427)
T 3l0o_A 161 YSTRLIDLFAPIG-KGQRGMIVAP-PKAGKTTILKEIANGIAEN--HPDTIRIIL---LIDERPEEVTDIRES 226 (427)
T ss_dssp HHHHHHHHHSCCB-TTCEEEEEEC-TTCCHHHHHHHHHHHHHHH--CTTSEEEEE---ECSCCHHHHSSSSSS
T ss_pred ccchhhhhccccc-CCceEEEecC-CCCChhHHHHHHHHHHhhc--CCCeEEEEE---EeccCcchHHHHHHH
Confidence 3345555554332 3445556665 8999999886655544321 122334443 445555555555433
No 409
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=25.07 E-value=54 Score=28.11 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=17.0
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
++|...+|+|||.++=.+...+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4577889999998877666554
No 410
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=25.05 E-value=37 Score=32.92 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=18.9
Q ss_pred CceEEeCCCCCCHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~ 209 (520)
.|+++..+.|+|||..|++++.
T Consensus 148 ~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4788999999999999988763
No 411
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=25.03 E-value=52 Score=28.94 Aligned_cols=23 Identities=22% Similarity=0.174 Sum_probs=17.5
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~ 212 (520)
++|...+|+|||..+-.+...+.
T Consensus 28 i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 28 IWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 45778999999988777666553
No 412
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=24.95 E-value=86 Score=27.53 Aligned_cols=22 Identities=23% Similarity=-0.014 Sum_probs=16.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
+.|....|+|||..+-.+...+
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4467789999998776666554
No 413
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=24.83 E-value=95 Score=32.17 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=30.9
Q ss_pred eEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcchhhHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVLENWEREL 237 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll~~W~~E~ 237 (520)
.+|..++|+|||..+..++..+.. .+.+++.+++.....+....+
T Consensus 284 ~~i~G~~GsGKSTLl~~l~g~~~~---~G~~vi~~~~ee~~~~l~~~~ 328 (525)
T 1tf7_A 284 ILATGATGTGKTLLVSRFVENACA---NKERAILFAYEESRAQLLRNA 328 (525)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHT---TTCCEEEEESSSCHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh---CCCCEEEEEEeCCHHHHHHHH
Confidence 567889999999988887765532 345678888765444444443
No 414
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=24.77 E-value=31 Score=31.91 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=16.3
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
++|...+|+|||..+-.+..
T Consensus 35 i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57889999999988766654
No 415
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=24.77 E-value=84 Score=35.99 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=30.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN 216 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~ 216 (520)
+++..=..|.+.|... .....+|+..|.|+|||..+=-++.++....+
T Consensus 138 HifaiA~~Ay~~m~~~--~~~QsIiisGESGAGKTe~~K~i~~yla~~~~ 185 (1080)
T 2dfs_A 138 HIFAVAEEAYKQMARD--ERNQSIIVSGESGAGKTVSAKYAMRYFATVSG 185 (1080)
T ss_dssp CHHHHHHHHHHHHHHH--TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHHhc--CCCcEEEEcCCCCCCccchHHHHHHHHHhhcc
Confidence 3333333455555533 22245788899999999988777777765443
No 416
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=24.70 E-value=67 Score=35.23 Aligned_cols=41 Identities=20% Similarity=0.176 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC
Q 039292 173 LVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN 215 (520)
Q Consensus 173 ~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~ 215 (520)
..|.+.|+.. .....+|+..|.|+|||..+=-++.++....
T Consensus 160 ~~Ay~~m~~~--~~nQsIiisGESGAGKTe~tK~i~~yla~~~ 200 (770)
T 1w9i_A 160 DVAYRSMLDD--RQNQSLLITGESGAGKTENTKKVIQYLASVA 200 (770)
T ss_dssp HHHHHHHHHH--CCCEEEEEECSTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhh--cCCcEEEEecCCCCcchHHHHHHHHHHHHhc
Confidence 3444555432 2224678899999999988766666665433
No 417
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=24.33 E-value=66 Score=28.53 Aligned_cols=20 Identities=25% Similarity=0.200 Sum_probs=15.6
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 039292 194 DEMGLGKTIQAITYLMLLKH 213 (520)
Q Consensus 194 demGlGKTi~aia~l~~l~~ 213 (520)
.--|+|||.|+=.+...|..
T Consensus 7 G~DGsGKsTq~~~L~~~L~~ 26 (197)
T 3hjn_A 7 GIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp CSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHH
Confidence 45799999999877777754
No 418
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=23.93 E-value=57 Score=28.69 Aligned_cols=20 Identities=25% Similarity=0.155 Sum_probs=15.5
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
.+|...+|+|||..+=.+..
T Consensus 32 i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 32 VVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 56788999999987665544
No 419
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=23.33 E-value=76 Score=32.93 Aligned_cols=61 Identities=23% Similarity=0.290 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC----CcchhhHHHHHHH
Q 039292 173 LVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP----ASVLENWERELKK 239 (520)
Q Consensus 173 ~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P----~sll~~W~~E~~~ 239 (520)
..+|..|...-+ |.+.+|+++ .|+|||..++..|.... ...-++|++- .+.+..+.+++..
T Consensus 163 iraID~l~Pigr-GQR~~I~g~-~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~ 227 (515)
T 2r9v_A 163 IKAIDSMIPIGR-GQRELIIGD-RQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQ 227 (515)
T ss_dssp CHHHHHHSCEET-TCBEEEEEE-TTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHH
T ss_pred cccccccccccc-CCEEEEEcC-CCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHh
Confidence 356666654433 445556665 99999998887765321 2332334443 2344555555554
No 420
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=23.32 E-value=45 Score=28.80 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=13.6
Q ss_pred eEEeCCCCCCHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITY 207 (520)
Q Consensus 190 ~ILademGlGKTi~aia~ 207 (520)
++|...+|+|||..+=.+
T Consensus 12 i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp EEEEECTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 467788999999765443
No 421
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=23.24 E-value=3.7e+02 Score=23.52 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch-hhHHHHHHHhcCCCeEEEecCCCchhhhH-HHHHHhhcCCCCCcc
Q 039292 197 GLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL-ENWERELKKWCPSFSVLQYHGAGRTAYSR-ELSSLAKAGLPPPFN 274 (520)
Q Consensus 197 GlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll-~~W~~E~~~~~p~~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~ 274 (520)
-..|.-..+.++.. ...+++||.|+..-. ......+... +..+..++|......+. .+..+.. +...
T Consensus 15 ~~~k~~~l~~ll~~-----~~~~~~lVF~~~~~~~~~l~~~L~~~--~~~~~~lhg~~~~~~r~~~~~~f~~----g~~~ 83 (212)
T 3eaq_A 15 VRGRLEVLSDLLYV-----ASPDRAMVFTRTKAETEEIAQGLLRL--GHPAQALHGDLSQGERERVLGAFRQ----GEVR 83 (212)
T ss_dssp TTSHHHHHHHHHHH-----HCCSCEEEECSSHHHHHHHHHHHHHH--TCCEEEECSSSCHHHHHHHHHHHHS----SSCC
T ss_pred HHHHHHHHHHHHHh-----CCCCeEEEEeCCHHHHHHHHHHHHHc--CCCEEEEECCCCHHHHHHHHHHHHC----CCCe
Confidence 34565544444432 236799999997543 3344444443 56777888875544333 3333332 2468
Q ss_pred EEEee
Q 039292 275 VLLVC 279 (520)
Q Consensus 275 vlitt 279 (520)
|+|+|
T Consensus 84 vlvaT 88 (212)
T 3eaq_A 84 VLVAT 88 (212)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 88888
No 422
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=22.48 E-value=62 Score=28.26 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=16.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
..+...+|+|||..+=.+...+
T Consensus 5 i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 5 VTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 4577889999998876665433
No 423
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=22.28 E-value=89 Score=35.40 Aligned_cols=42 Identities=19% Similarity=0.166 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCC
Q 039292 173 LVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNN 216 (520)
Q Consensus 173 ~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~ 216 (520)
..|.+.|... .....+|+..|.|+|||..+=-++.++....+
T Consensus 134 ~~Ay~~m~~~--~~~QsIiisGESGAGKTe~~K~i~~yla~~~~ 175 (995)
T 2ycu_A 134 EGAYRSMLQD--REDQSILCTGESGAGKTENTKKVIQYLAHVAS 175 (995)
T ss_dssp HHHHHHHHHH--CCCEEEEEECBTTSSHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhc--CCCcEEEecCCCCCCchhhHHHHHHHHHHhcc
Confidence 3444445432 22245778899999999888777777665443
No 424
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=22.18 E-value=88 Score=35.51 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=28.6
Q ss_pred CCcHHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhC
Q 039292 167 VLKPYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLN 215 (520)
Q Consensus 167 ~Lr~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~ 215 (520)
.++..=..|.+.|+.. .....+|+..|.|+|||..+=-++.++....
T Consensus 154 HifaiA~~Ay~~m~~~--~~~QsIiisGESGAGKTe~~K~i~~yla~~~ 200 (1010)
T 1g8x_A 154 HIFAISDVAYRSMLDD--RQNQSLLITGESGAGKTENTKKVIQYLASVA 200 (1010)
T ss_dssp CHHHHHHHHHHHHHHH--TCCEEEEEEESTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhc--CCCeEEEEeCCCCCCcchHHHHHHHHHHHhc
Confidence 3333333444555432 2224567889999999988776666665433
No 425
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=22.05 E-value=4e+02 Score=27.15 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHH
Q 039292 175 GVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 175 gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~ 212 (520)
+|..|....+ |. .+++....|+|||..+..++....
T Consensus 141 ~ID~L~pi~k-Gq-~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLLAPYIK-GG-KIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHHSCEET-TC-EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhcc-CC-EEEEECCCCCCccHHHHHHHhhhh
Confidence 5666654333 32 357788899999988877776543
No 426
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=21.33 E-value=41 Score=33.52 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=16.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHh---CCCCCCEEEE
Q 039292 191 ILADEMGLGKTIQAITYLMLLKHL---NNDPGPHLIV 224 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~~~---~~~~~~~LIV 224 (520)
|....-|.|||.+++.++..+... ...+.++|+|
T Consensus 116 v~s~KGGvGKTT~a~nLA~~LA~~g~~~~~g~rVlli 152 (403)
T 3ez9_A 116 VVNLKGGVSKTVSTVTLAHALRVHQDLLRHDLRILVI 152 (403)
T ss_dssp ECCC--------CHHHHHHHHHSCGGGGGGCCCEEEE
T ss_pred EEcCCCCchHHHHHHHHHHHHHhcchhhcCCCeEEEE
Confidence 455688999999999998877520 0235667776
No 427
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=21.17 E-value=58 Score=28.13 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=14.2
Q ss_pred eEEeCCCCCCHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYL 208 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l 208 (520)
.+|...+|+|||..+=.++
T Consensus 5 i~l~G~~GaGKSTl~~~L~ 23 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLA 23 (189)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHh
Confidence 3577889999998665543
No 428
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=20.90 E-value=2.4e+02 Score=24.91 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeCCcch
Q 039292 170 PYQLVGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCPASVL 230 (520)
Q Consensus 170 ~~Q~~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P~sll 230 (520)
+-|..++..++.... .=.|+..-=|++||.+.++-+..+. ...++.+.|++|...-
T Consensus 37 ~~~~~a~~~l~~s~~---~~~iv~g~ggs~~~~~~~a~L~~~a--~~~Gr~V~vLAp~~~s 92 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRP---SLAIVSGQGGAAGQRERVAELVMMA--REQGREVQIIAADRRS 92 (189)
T ss_dssp HHHHHHHHHHHHHSC---CEECCBCSSCSHHHHHHHHHHHHHH--HHTTCCEEEECSTTHH
T ss_pred ccchhHHHHHhccCC---ceEEEecccchHHHHHHHHHHHHHH--HhcCeEEEEEcCchHH
Confidence 557777777764322 2246777789999999766655543 3456789999997544
No 429
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=20.64 E-value=38 Score=29.48 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=15.5
Q ss_pred EEeCCCCCCHHHHHHHHHHHHH
Q 039292 191 ILADEMGLGKTIQAITYLMLLK 212 (520)
Q Consensus 191 ILademGlGKTi~aia~l~~l~ 212 (520)
|++ ..|+|||..+-.++..+.
T Consensus 7 IvG-~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 7 IVG-TSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEE-SCHHHHHHHHHHHHHHHH
T ss_pred EEC-CCCCCHHHHHHHHHHHhh
Confidence 455 899999987776666554
No 430
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=20.62 E-value=69 Score=29.74 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=18.0
Q ss_pred ceEEeCCCCCCHHHHHHHHHHHH
Q 039292 189 GAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 189 g~ILademGlGKTi~aia~l~~l 211 (520)
-++|...||+|||..+-.+...+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 46888999999998876665544
No 431
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=20.53 E-value=58 Score=29.89 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=16.6
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
+.|...+|+|||..+-.+...+
T Consensus 25 I~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4688899999998876655433
No 432
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=20.52 E-value=56 Score=28.45 Aligned_cols=19 Identities=21% Similarity=0.237 Sum_probs=14.2
Q ss_pred eEEeCCCCCCHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYL 208 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l 208 (520)
+.|...+|+|||..+=.+.
T Consensus 11 I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4677889999998764443
No 433
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=20.43 E-value=1.2e+02 Score=27.48 Aligned_cols=22 Identities=23% Similarity=0.132 Sum_probs=17.4
Q ss_pred eEEeCCCCCCHHHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~~l 211 (520)
+++...+|+|||.++-.+...+
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 4577889999999987766655
No 434
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=20.36 E-value=61 Score=28.48 Aligned_cols=18 Identities=33% Similarity=0.366 Sum_probs=13.1
Q ss_pred eEEeCCCCCCHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITY 207 (520)
Q Consensus 190 ~ILademGlGKTi~aia~ 207 (520)
+.|...+|+|||..+=.+
T Consensus 5 i~l~G~~GsGKST~~~~L 22 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLF 22 (206)
T ss_dssp EEEECSTTSCHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 356778999999765443
No 435
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=20.27 E-value=2.6e+02 Score=28.93 Aligned_cols=61 Identities=30% Similarity=0.348 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhcCCCceEEeCCCCCCHHHHHHHHHHHHHHhCCCCCCEEEEeC----CcchhhHHHHHHHh
Q 039292 174 VGVNFLLLLYRKGIAGAILADEMGLGKTIQAITYLMLLKHLNNDPGPHLIVCP----ASVLENWERELKKW 240 (520)
Q Consensus 174 ~gv~~l~~~~~~~~~g~ILademGlGKTi~aia~l~~l~~~~~~~~~~LIV~P----~sll~~W~~E~~~~ 240 (520)
.+|..|....+ |.+.+|+++ .|.|||..++..|... ....-++|++- .+.+..+.+++...
T Consensus 151 kaID~l~Pigr-GQR~~Ifg~-~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~ 215 (513)
T 3oaa_A 151 KAVDSMIPIGR-GQRELIIGD-RQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEH 215 (513)
T ss_dssp HHHHHHSCCBT-TCBCEEEES-SSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred eeecccccccc-CCEEEeecC-CCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhc
Confidence 46666654333 435556666 9999999887666421 22233334443 34455555666554
No 436
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=20.15 E-value=33 Score=37.93 Aligned_cols=24 Identities=25% Similarity=0.241 Sum_probs=20.0
Q ss_pred CceEEeCCCCCCHHHHHHHHHHHH
Q 039292 188 AGAILADEMGLGKTIQAITYLMLL 211 (520)
Q Consensus 188 ~g~ILademGlGKTi~aia~l~~l 211 (520)
.+++|..++|+|||..|-+++..+
T Consensus 512 ~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 512 KGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp CCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred ceeEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999887777654
No 437
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=20.10 E-value=63 Score=28.68 Aligned_cols=20 Identities=20% Similarity=0.292 Sum_probs=15.5
Q ss_pred eEEeCCCCCCHHHHHHHHHH
Q 039292 190 AILADEMGLGKTIQAITYLM 209 (520)
Q Consensus 190 ~ILademGlGKTi~aia~l~ 209 (520)
++|...+|+|||..+-.++.
T Consensus 11 i~l~GpsGsGKsTl~~~L~~ 30 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFK 30 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHh
Confidence 56889999999987655543
Done!