BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039295
(139 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E7P|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|C Chain C, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
pdb|2E7P|D Chain D, Crystal Structure Of The Holo Form Of Glutaredoxin C1 From
Populus Tremula X Tremuloides
Length = 116
Score = 69.3 bits (168), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 6/111 (5%)
Query: 29 MPREE---PMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGAD 85
M ++E ++K +AS + VV+FS + C C+ VK+L +G + V ELD G+
Sbjct: 1 MSKQELDAALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQ 60
Query: 86 IERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKEAGA 136
++ L + VP VFIGGK IG D V+ H L+PLL++A A
Sbjct: 61 LQSALAHWTGRGT---VPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 108
>pdb|1Z7P|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
pdb|1Z7R|A Chain A, Solution Structure Of Reduced Glutaredoxin C1 From Populus
Tremula X Tremuloides
Length = 117
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 32 EEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLM 91
+ ++K +AS + VV+FS + C C+ VK+L +G + V ELD G+ ++ L
Sbjct: 8 DAALKKAKELASSAPVVVFSKTYCGYCNRVKQLLTQVGASYKVVELDELSDGSQLQSALA 67
Query: 92 RLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKEAGA 136
+ VP VFIGGK IG D V+ H L+PLL++A A
Sbjct: 68 HWTGRGT---VPNVFIGGKQIGGCDTVVEKHQRNELLPLLQDAAA 109
>pdb|3FZ9|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione
pdb|3FZA|A Chain A, Crystal Structure Of Poplar Glutaredoxin S12 In Complex
With Glutathione And Beta-Mercaptoethanol
Length = 112
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 55/102 (53%), Gaps = 4/102 (3%)
Query: 36 EKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDH-DPRGADIERVLMRLL 94
+ V + +E+ VV++S + C VK LF + V+P V ELD +G I++VL RL
Sbjct: 9 DAVKKTVAENPVVVYSKTWCSYSSEVKSLFKRLNVDPLVVELDELGAQGPQIQKVLERLT 68
Query: 95 ANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKEAGA 136
+ VP VFIGGK IG + + G L PLL EA A
Sbjct: 69 GQHT---VPNVFIGGKHIGGCTDTVKLYRKGELEPLLSEANA 107
>pdb|3RHB|A Chain A, Crystal Structure Of The Apo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|A Chain A, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
pdb|3RHC|B Chain B, Crystal Structure Of The Holo Form Of Glutaredoxin C5 From
Arabidopsis Thaliana
Length = 113
Score = 63.5 bits (153), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 36 EKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDH-DPRGADIERVLMRLL 94
E + + +E+ VVI+S + C C VK LF +GV P V ELD P+G +++VL RL
Sbjct: 10 ESIRKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLT 69
Query: 95 ANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKEAGA 136
+ VP VF+ GK IG + + G L +L EA
Sbjct: 70 GQHT---VPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEANG 108
>pdb|2HT9|A Chain A, The Structure Of Dimeric Human Glutaredoxin 2
pdb|2HT9|B Chain B, The Structure Of Dimeric Human Glutaredoxin 2
Length = 146
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 34 PMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRL 93
P+ ++ S++ VVIFS +SC C K+LF M VN V ELD G + L ++
Sbjct: 38 PVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKM 97
Query: 94 LANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKE 133
+ VP +F+ G IG H G L+PL+ +
Sbjct: 98 TGERT---VPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 134
>pdb|2FLS|A Chain A, Crystal Structure Of Human Glutaredoxin 2 Complexed With
Glutathione
Length = 132
Score = 62.4 bits (150), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 34 PMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRL 93
P+ ++ S++ VVIFS +SC C K+LF M VN V ELD G + L ++
Sbjct: 24 PVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKM 83
Query: 94 LANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKE 133
+ VP +F+ G IG H G L+PL+ +
Sbjct: 84 TGERT---VPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 120
>pdb|2CQ9|A Chain A, Solution Structure Of Rsgi Ruh-044, An N-Terminal Domain
Of Glutaredoxin 2 From Human Cdna
Length = 130
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 3/100 (3%)
Query: 34 PMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRL 93
P+ ++ S++ VVIFS +SC C K+LF M VN V ELD G + L ++
Sbjct: 16 PVNQIQETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKM 75
Query: 94 LANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKE 133
+ VP +F+ G IG H G L+PL+ +
Sbjct: 76 TGERT---VPRIFVNGTFIGGATDTHRLHKEGKLLPLVHQ 112
>pdb|3H8Q|A Chain A, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
pdb|3H8Q|B Chain B, Crystal Structure Of Glutaredoxin Domain Of Human
Thioredoxin Reductase 3
Length = 114
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 29 MPREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIER 88
M REE + + S VVIFS S C VK LF +GV V ELD GA ++
Sbjct: 1 MAREELRRHLVGLIERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQE 60
Query: 89 VLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKE 133
VL + ++ VP +F+ +G D+ ++ +G L LL+E
Sbjct: 61 VLSEI---TNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 102
>pdb|2X8C|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8C|B Chain B, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
With The Reduced C-Terminal End
pdb|2X8G|A Chain A, Oxidized Thioredoxin Glutathione Reductase From
Schistosoma Mansoni
pdb|2X8H|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Gsh
pdb|2X99|A Chain A, Thioredoxin Glutathione Reductase From Schistosoma Mansoni
In Complex With Nadph
Length = 598
Score = 45.4 bits (106), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 30 PREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERV 89
P + + + + +AV++FS ++C C VK + + ELD G+ I++
Sbjct: 3 PADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKC 62
Query: 90 LMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKEA 134
L S VP +F+ GK IG V+ + N L ++ E+
Sbjct: 63 LASF---SKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|3H4K|A Chain A, Crystal Structure Of The Wild Type Thioredoxin Glutatione
Reductase From Schistosoma Mansoni In Complex With
Auranofin
Length = 598
Score = 45.4 bits (106), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 30 PREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERV 89
P + + + + +AV++FS ++C C VK + + ELD G+ I++
Sbjct: 3 PADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKC 62
Query: 90 LMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKEA 134
L S VP +F+ GK IG V+ + N L ++ E+
Sbjct: 63 LASF---SKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|2V6O|A Chain A, Structure Of Schistosoma Mansoni Thioredoxin-Glutathione
Reductase (Smtgr)
Length = 596
Score = 45.4 bits (106), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 48/105 (45%), Gaps = 3/105 (2%)
Query: 30 PREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERV 89
P + + + + +AV++FS ++C C VK + + ELD G+ I++
Sbjct: 3 PADGTSQWLRKTVDSAAVILFSKTTCPYCKKVKDVLAEAKIKHATIELDQLSNGSAIQKC 62
Query: 90 LMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKEA 134
L S VP +F+ GK IG V+ + N L ++ E+
Sbjct: 63 LASF---SKIETVPQMFVRGKFIGDSQTVLKYYSNDELAGIVNES 104
>pdb|1FOV|A Chain A, Glutaredoxin 3 From Escherichia Coli In The Fully Oxidized
Form
Length = 82
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106
V I++ +C CH K L GV + EL D A E ++ R S VP +F
Sbjct: 3 VEIYTKETCPYCHRAKALLSSKGV--SFQELPIDGNAAKREEMIKR----SGRTTVPQIF 56
Query: 107 IGGKLIGAMDRVMASHINGTLVPLLK 132
I + IG D + A G L PLLK
Sbjct: 57 IDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|3GRX|A Chain A, Nmr Structure Of Escherichia Coli Glutaredoxin
3-Glutathione Mixed Disulfide Complex, 20 Structures
Length = 82
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 6/86 (6%)
Query: 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106
V I++ +C H K L GV + EL D A E ++ R S VP +F
Sbjct: 3 VEIYTKETCPYSHRAKALLSSKGV--SFQELPIDGNAAKREEMIKR----SGRTTVPQIF 56
Query: 107 IGGKLIGAMDRVMASHINGTLVPLLK 132
I + IG D + A G L PLLK
Sbjct: 57 IDAQHIGGYDDLYALDARGGLDPLLK 82
>pdb|3D4M|A Chain A, Glutaredoxin 2 Oxidized Structure
Length = 109
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
Query: 29 MPREEPMEKVARVASESAVVIFSVSSCCMCHA-VKRLFCGMGVNPT---VYELDHDPRGA 84
M +E + V + + V + + + C C A + LF + V + V ELD G+
Sbjct: 1 MVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGS 60
Query: 85 DIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLK 132
+I+ L + S VP V+I GK IG + NG L +LK
Sbjct: 61 EIQDALEEI---SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 105
>pdb|1KTE|A Chain A, Crystal Structure Of Thioltransferase At 2.2 Angstrom
Resolution
Length = 105
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 39/91 (42%)
Query: 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106
VV+F +C C + L + + E +D + L + A VP VF
Sbjct: 14 VVVFIKPTCPFCRKTQELLSQLPFKEGLLEFVDITATSDTNEIQDYLQQLTGARTVPRVF 73
Query: 107 IGGKLIGAMDRVMASHINGTLVPLLKEAGAL 137
IG + IG + + H G L+ L++ GA+
Sbjct: 74 IGKECIGGCTDLESMHKRGELLTRLQQVGAV 104
>pdb|3CTF|A Chain A, Crystal Structure Of Oxidized Grx2
pdb|3CTG|A Chain A, Crystal Structure Of Reduced Glutaredoxin 2
Length = 129
Score = 37.4 bits (85), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 28 NMPREEPMEKVARVASESAVVIFSVSSCCMCHA-VKRLFCGMGVNPT---VYELDHDPRG 83
+M +E + V + + V + + + C C A + LF + V + V ELD G
Sbjct: 20 HMVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNG 79
Query: 84 ADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLK 132
++I+ L + S VP V+I GK IG + NG L +LK
Sbjct: 80 SEIQDALEEI---SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 125
>pdb|1NM3|A Chain A, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
pdb|1NM3|B Chain B, Crystal Structure Of Heamophilus Influenza Hybrid-prx5
Length = 241
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 44 ESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVP 103
+ ++ IF+ C C K+L G++ L HD ++ + A S VP
Sbjct: 169 QESISIFTKPGCPFCAKAKQLLHDKGLSFEEIILGHD-------ATIVSVRAVSGRTTVP 221
Query: 104 IVFIGGKLIGAMD 116
VFIGGK IG D
Sbjct: 222 QVFIGGKHIGGSD 234
>pdb|2YAN|A Chain A, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
pdb|2YAN|B Chain B, Crystal Structure Of The Second Glutaredoxin Domain Of
Human Txnl2
Length = 105
Score = 36.2 bits (82), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 36 EKVARVASESAVVIF-----SVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVL 90
E++ + ++++V++F + C + + GV +++ D E V
Sbjct: 8 ERLKVLTNKASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILED------EEVR 61
Query: 91 MRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLK 132
L A S+ P +++ G+L+G +D V NG L+P+L+
Sbjct: 62 QGLKAYSNWPTYPQLYVKGELVGGLDIVKELKENGELLPILR 103
>pdb|3D5J|A Chain A, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
pdb|3D5J|B Chain B, Structure Of Yeast Grx2-C30s Mutant With Glutathionyl
Mixed Disulfide
Length = 112
Score = 33.9 bits (76), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Query: 29 MPREEPMEKVARVASESAVVIFSVSSCCMCHA-VKRLFCGMGVNPT---VYELDHDPRGA 84
M +E + V + + V + + + C A + LF + V + V ELD G+
Sbjct: 4 MVSQETVAHVKDLIGQKEVFVAAKTYCPYSKATLSTLFQELNVPKSKALVLELDEMSNGS 63
Query: 85 DIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLK 132
+I+ L + S VP V+I GK IG + NG L +LK
Sbjct: 64 EIQDALEEI---SGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEILK 108
>pdb|1JHB|A Chain A, Human Glutaredoxin In Fully Reduced Form, Nmr, 20
Structures
Length = 106
Score = 32.7 bits (73), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYE---LDHDPRGADIERVLMRLLANSSAVPVP 103
VV+F +C C + + + + + E + +I+ L +L + A VP
Sbjct: 15 VVVFIKPTCPYCRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQL---TGARTVP 71
Query: 104 IVFIGGKLIGAMDRVMASHINGTLVPLLKEAGAL 137
VFIG IG +++ +G L+ LK+ GAL
Sbjct: 72 RVFIGKDCIGGCSDLVSLQQSGELLTRLKQIGAL 105
>pdb|1WIK|A Chain A, Solution Structure Of The Picot Homology 2 Domain Of The
Mouse Pkc-Interacting Cousin Of Thioredoxin Protein
Length = 109
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 53 SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLI 112
+ C + + GV +++ D E V L S+ P +++ G L+
Sbjct: 28 AKCGFSKQILEILNSTGVEYETFDILED------EEVRQGLKTFSNWPTYPQLYVRGDLV 81
Query: 113 GAMDRVMASHINGTLVPLLK-EAG 135
G +D V NG L+P+LK E+G
Sbjct: 82 GGLDIVKELKDNGELLPILKGESG 105
>pdb|3SUK|A Chain A, Crystal Structure Of Cerato-Platanin 2 From M. Perniciosa
(Mpcp2)
pdb|3SUK|B Chain B, Crystal Structure Of Cerato-Platanin 2 From M. Perniciosa
(Mpcp2)
Length = 125
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/77 (19%), Positives = 33/77 (42%)
Query: 29 MPREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIER 88
P + + + S + F+ +C C+ + F G+ + + +DH G ++ +
Sbjct: 35 FPTFGSVPTFPHIGASSDIGGFNSPACGNCYTISFTFQGVTRSINLVAIDHAGNGFNVAQ 94
Query: 89 VLMRLLANSSAVPVPIV 105
M L N +AV + +
Sbjct: 95 AAMDELTNGNAVALGTI 111
>pdb|1B4Q|A Chain A, Solution Structure Of Human Thioltransferase Complex With
Glutathione
Length = 105
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYE---LDHDPRGADIERVLMRLLANSSAVPVP 103
VV+F +C + + + + + E + +I+ L +L + A VP
Sbjct: 14 VVVFIKPTCPYSRRAQEILSQLPIKQGLLEFVDITATNHTNEIQDYLQQL---TGARTVP 70
Query: 104 IVFIGGKLIGAMDRVMASHINGTLVPLLKEAGAL 137
VFIG IG +++ +G L+ LK+ GAL
Sbjct: 71 RVFIGKDSIGGSSDLVSLQQSGELLTRLKQIGAL 104
>pdb|1YKA|A Chain A, Solution Structure Of Grx4, A Monothiol Glutaredoxin From
E. Coli
Length = 115
Score = 28.9 bits (63), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 35 MEKVARVASESAVVIF-----SVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERV 89
+EK+ R +E+ ++++ + SC + G ++ +P DI R
Sbjct: 5 IEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNP---DI-RA 60
Query: 90 LMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKEAGALW 138
+ AN P +++ G+L+G D V+ + G L L+KE A +
Sbjct: 61 ELPKYANWPTFPQ--LWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 107
>pdb|2WCI|A Chain A, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
pdb|2WCI|B Chain B, Structure Of E. Coli Monothiol Glutaredoxin Grx4 Homodimer
Length = 135
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 35 MEKVARVASESAVVIF-----SVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERV 89
+EK+ R +E+ ++++ + SC + G ++ +P DI R
Sbjct: 25 IEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNP---DI-RA 80
Query: 90 LMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKEAGALW 138
+ AN P +++ G+L+G D V+ + G L L+KE A +
Sbjct: 81 ELPKYANWPTFPQ--LWVDGELVGGCDIVIEMYQRGELQQLIKETAAKY 127
>pdb|3QMX|A Chain A, X-Ray Crystal Structure Of Synechocystis Sp. Pcc 6803
Glutaredoxin A
Length = 99
Score = 27.3 bits (59), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 5/90 (5%)
Query: 42 ASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVP 101
A + + I++ S+C C L GV Y +D D E +
Sbjct: 13 AVSAKIEIYTWSTCPFCMRALALLKRKGVEFQEYCID-----GDNEAREAMAARANGKRS 67
Query: 102 VPIVFIGGKLIGAMDRVMASHINGTLVPLL 131
+P +FI + IG D + A G L PLL
Sbjct: 68 LPQIFIDDQHIGGCDDIYALDGAGKLDPLL 97
>pdb|2KHP|A Chain A, Solution Structure Of Glutaredoxin From Brucella
Melitensis
Length = 92
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 6/86 (6%)
Query: 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106
V+I++ C C K L G + P + + S P +F
Sbjct: 8 VIIYTRPGCPYCARAKALLARKGAEFNEIDASATPE------LRAEMQERSGRNTFPQIF 61
Query: 107 IGGKLIGAMDRVMASHINGTLVPLLK 132
IG +G D + A G L LLK
Sbjct: 62 IGSVHVGGCDDLYALEDEGKLDSLLK 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,530,407
Number of Sequences: 62578
Number of extensions: 118301
Number of successful extensions: 279
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 28
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)