Query 039295
Match_columns 139
No_of_seqs 161 out of 1173
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 08:19:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039295.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039295hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02189 GlrX-like_plant Glut 100.0 3.2E-31 7E-36 179.4 11.9 98 39-139 2-99 (99)
2 PHA03050 glutaredoxin; Provisi 100.0 3.6E-30 7.8E-35 176.9 13.2 102 34-138 2-106 (108)
3 KOG1752 Glutaredoxin and relat 100.0 8.5E-30 1.8E-34 173.5 13.0 102 34-138 3-104 (104)
4 PRK10824 glutaredoxin-4; Provi 100.0 1.3E-28 2.7E-33 170.7 12.0 100 33-138 3-107 (115)
5 TIGR00365 monothiol glutaredox 99.9 2.9E-26 6.2E-31 154.6 10.5 91 35-131 2-97 (97)
6 cd03028 GRX_PICOT_like Glutare 99.9 1.3E-24 2.9E-29 144.4 10.3 85 38-128 1-90 (90)
7 PRK10638 glutaredoxin 3; Provi 99.9 2E-23 4.3E-28 136.5 10.0 82 45-132 2-83 (83)
8 PTZ00062 glutaredoxin; Provisi 99.9 5E-23 1.1E-27 155.4 11.2 95 33-133 101-200 (204)
9 TIGR02181 GRX_bact Glutaredoxi 99.9 4.2E-23 9.1E-28 133.3 8.8 79 47-131 1-79 (79)
10 TIGR02180 GRX_euk Glutaredoxin 99.9 1E-22 2.2E-27 131.9 10.0 82 47-131 1-84 (84)
11 cd03419 GRX_GRXh_1_2_like Glut 99.9 4.6E-22 1E-26 128.5 10.1 81 46-129 1-81 (82)
12 cd03031 GRX_GRX_like Glutaredo 99.9 2.4E-21 5.1E-26 139.6 10.1 83 46-134 1-93 (147)
13 cd03418 GRX_GRXb_1_3_like Glut 99.9 2.6E-21 5.6E-26 123.3 9.2 74 46-125 1-75 (75)
14 COG0695 GrxC Glutaredoxin and 99.9 2.9E-21 6.2E-26 126.0 9.4 78 46-127 2-79 (80)
15 COG0278 Glutaredoxin-related p 99.9 8.8E-21 1.9E-25 126.7 10.3 98 32-135 2-105 (105)
16 TIGR02190 GlrX-dom Glutaredoxi 99.8 8.6E-21 1.9E-25 123.0 9.1 74 41-121 4-77 (79)
17 cd03027 GRX_DEP Glutaredoxin ( 99.8 8.5E-21 1.8E-25 121.0 8.3 72 45-122 1-72 (73)
18 cd03029 GRX_hybridPRX5 Glutare 99.8 4.7E-20 1E-24 117.2 9.0 69 46-121 2-70 (72)
19 PRK12759 bifunctional gluaredo 99.8 1.2E-19 2.6E-24 149.6 10.1 88 45-137 2-94 (410)
20 TIGR02183 GRXA Glutaredoxin, G 99.8 1.6E-19 3.5E-24 119.0 8.7 73 47-125 2-81 (86)
21 PRK11200 grxA glutaredoxin 1; 99.8 2.3E-19 5E-24 117.6 8.7 73 46-124 2-81 (85)
22 cd02066 GRX_family Glutaredoxi 99.8 2.8E-18 6E-23 106.8 8.7 71 46-122 1-71 (72)
23 PF00462 Glutaredoxin: Glutare 99.7 1.2E-17 2.5E-22 102.6 6.6 60 47-112 1-60 (60)
24 cd03030 GRX_SH3BGR Glutaredoxi 99.7 4E-17 8.7E-22 109.1 8.3 80 47-132 2-91 (92)
25 KOG0911 Glutaredoxin-related p 99.7 7.2E-17 1.6E-21 122.0 10.3 94 35-134 129-227 (227)
26 TIGR02194 GlrX_NrdH Glutaredox 99.7 2.5E-16 5.5E-21 100.1 6.6 64 47-117 1-65 (72)
27 PRK10329 glutaredoxin-like pro 99.6 7.8E-16 1.7E-20 100.5 7.8 65 46-117 2-66 (81)
28 TIGR02196 GlrX_YruB Glutaredox 99.5 4.1E-14 8.9E-19 88.3 7.6 66 46-117 1-66 (74)
29 KOG2824 Glutaredoxin-related p 99.5 1.3E-13 2.8E-18 107.1 7.6 98 34-134 117-224 (281)
30 cd02976 NrdH NrdH-redoxin (Nrd 99.5 4.4E-13 9.4E-18 83.5 7.9 66 46-117 1-66 (73)
31 cd02973 TRX_GRX_like Thioredox 99.4 6.9E-13 1.5E-17 82.5 6.1 58 46-113 2-64 (67)
32 TIGR02200 GlrX_actino Glutared 99.4 2.9E-12 6.2E-17 81.1 7.6 65 46-116 1-67 (77)
33 PF04908 SH3BGR: SH3-binding, 99.2 1.6E-10 3.4E-15 78.1 8.1 82 46-132 2-97 (99)
34 cd03026 AhpF_NTD_C TRX-GRX-lik 99.1 1.8E-10 3.8E-15 76.4 6.9 70 34-113 3-77 (89)
35 cd00570 GST_N_family Glutathio 99.1 9E-10 2E-14 67.0 7.9 68 48-121 2-69 (71)
36 cd03041 GST_N_2GST_N GST_N fam 99.1 1.3E-09 2.8E-14 69.8 8.3 71 47-123 2-74 (77)
37 TIGR00411 redox_disulf_1 small 99.0 4.4E-09 9.6E-14 67.2 8.3 62 46-115 2-68 (82)
38 cd03037 GST_N_GRX2 GST_N famil 99.0 3.9E-09 8.5E-14 66.2 7.7 68 48-123 2-70 (71)
39 cd03040 GST_N_mPGES2 GST_N fam 99.0 5.1E-09 1.1E-13 66.6 8.0 68 46-122 1-72 (77)
40 PHA02125 thioredoxin-like prot 98.9 8E-09 1.7E-13 65.9 7.0 55 47-112 2-56 (75)
41 cd03060 GST_N_Omega_like GST_N 98.9 2E-08 4.4E-13 63.0 8.7 67 48-121 2-69 (71)
42 cd03055 GST_N_Omega GST_N fami 98.9 4.5E-08 9.7E-13 64.4 10.1 69 46-121 18-87 (89)
43 cd03059 GST_N_SspA GST_N famil 98.9 2.8E-08 6E-13 62.2 8.5 69 47-122 1-69 (73)
44 cd02977 ArsC_family Arsenate R 98.9 7E-09 1.5E-13 70.3 5.9 46 47-95 1-46 (105)
45 cd03036 ArsC_like Arsenate Red 98.8 4.5E-09 9.7E-14 72.2 5.0 39 47-85 1-39 (111)
46 TIGR00412 redox_disulf_2 small 98.8 2.4E-08 5.2E-13 64.0 6.9 54 47-112 3-60 (76)
47 cd02975 PfPDO_like_N Pyrococcu 98.8 2.3E-08 5.1E-13 68.7 6.4 59 39-107 17-81 (113)
48 cd03051 GST_N_GTT2_like GST_N 98.8 4.3E-08 9.4E-13 61.1 6.8 71 47-121 1-72 (74)
49 PF05768 DUF836: Glutaredoxin- 98.7 9.1E-08 2E-12 62.1 7.6 53 46-109 1-57 (81)
50 cd03045 GST_N_Delta_Epsilon GS 98.7 1.5E-07 3.3E-12 59.0 8.4 71 47-121 1-71 (74)
51 PRK01655 spxA transcriptional 98.7 7.1E-08 1.5E-12 68.2 6.8 38 47-84 2-39 (131)
52 TIGR01295 PedC_BrcD bacterioci 98.7 1.7E-07 3.7E-12 65.4 8.0 78 37-115 15-106 (122)
53 PF13417 GST_N_3: Glutathione 98.6 2E-07 4.3E-12 59.2 7.4 68 49-123 1-68 (75)
54 TIGR01617 arsC_related transcr 98.6 8.6E-08 1.9E-12 66.3 5.8 49 47-95 1-49 (117)
55 PRK15317 alkyl hydroperoxide r 98.6 1.1E-07 2.3E-12 80.6 7.5 81 23-113 96-181 (517)
56 cd03056 GST_N_4 GST_N family, 98.6 4.2E-07 9.1E-12 56.6 8.4 71 47-121 1-71 (73)
57 TIGR02187 GlrX_arch Glutaredox 98.6 1.7E-07 3.8E-12 71.0 7.4 71 30-110 120-195 (215)
58 TIGR03140 AhpF alkyl hydropero 98.6 7.1E-08 1.5E-12 81.7 5.2 82 23-114 97-183 (515)
59 PHA02278 thioredoxin-like prot 98.6 7.1E-07 1.5E-11 60.6 9.0 70 37-112 6-85 (103)
60 TIGR03143 AhpF_homolog putativ 98.6 2E-07 4.4E-12 79.6 7.3 79 23-111 456-539 (555)
61 cd03032 ArsC_Spx Arsenate Redu 98.5 3.2E-07 7E-12 63.2 6.8 38 47-84 2-39 (115)
62 PRK13344 spxA transcriptional 98.5 2.8E-07 6E-12 65.3 6.5 38 47-84 2-39 (132)
63 PRK12559 transcriptional regul 98.5 3.3E-07 7.2E-12 64.8 6.8 38 47-84 2-39 (131)
64 cd03035 ArsC_Yffb Arsenate Red 98.5 3.3E-07 7.2E-12 62.4 6.0 38 47-84 1-38 (105)
65 KOG0910 Thioredoxin-like prote 98.5 1.9E-07 4.1E-12 67.2 5.0 75 30-112 46-128 (150)
66 cd02954 DIM1 Dim1 family; Dim1 98.5 5.9E-07 1.3E-11 62.2 7.0 70 36-113 3-82 (114)
67 cd02953 DsbDgamma DsbD gamma f 98.4 8.5E-07 1.8E-11 59.3 6.7 67 36-106 2-77 (104)
68 cd02989 Phd_like_TxnDC9 Phosdu 98.4 1.7E-06 3.6E-11 59.4 7.6 72 36-115 13-91 (113)
69 cd03053 GST_N_Phi GST_N family 98.4 4E-06 8.6E-11 52.8 8.6 73 47-123 2-74 (76)
70 cd03054 GST_N_Metaxin GST_N fa 98.4 2.3E-06 4.9E-11 53.6 7.3 57 53-123 14-70 (72)
71 cd03058 GST_N_Tau GST_N family 98.4 5.2E-06 1.1E-10 52.2 8.7 69 47-122 1-70 (74)
72 cd03033 ArsC_15kD Arsenate Red 98.4 1.5E-06 3.2E-11 60.1 6.4 37 46-82 1-37 (113)
73 cd03052 GST_N_GDAP1 GST_N fami 98.3 3.6E-06 7.9E-11 53.3 7.6 71 47-121 1-71 (73)
74 PF13192 Thioredoxin_3: Thiore 98.3 1.4E-06 2.9E-11 55.7 5.1 54 46-111 2-59 (76)
75 cd02985 TRX_CDSP32 TRX family, 98.3 3.9E-06 8.4E-11 56.4 7.3 61 47-112 19-84 (103)
76 cd02949 TRX_NTR TRX domain, no 98.3 4.9E-06 1.1E-10 55.1 7.3 60 47-114 17-82 (97)
77 cd03061 GST_N_CLIC GST_N famil 98.3 7.3E-06 1.6E-10 54.6 7.8 64 53-123 20-83 (91)
78 cd02947 TRX_family TRX family; 98.3 8.2E-06 1.8E-10 51.6 7.9 57 46-112 13-76 (93)
79 PTZ00051 thioredoxin; Provisio 98.3 7.2E-06 1.6E-10 53.9 7.7 72 35-114 8-86 (98)
80 PF00085 Thioredoxin: Thioredo 98.2 1.4E-05 3.1E-10 52.3 9.0 59 47-113 21-85 (103)
81 cd02994 PDI_a_TMX PDIa family, 98.2 7.7E-06 1.7E-10 54.2 7.7 67 36-110 9-82 (101)
82 cd03049 GST_N_3 GST_N family, 98.2 8.8E-06 1.9E-10 50.9 7.6 68 47-121 1-71 (73)
83 PRK09381 trxA thioredoxin; Pro 98.2 1E-05 2.2E-10 54.3 8.1 61 47-115 25-91 (109)
84 COG3118 Thioredoxin domain-con 98.2 2.2E-06 4.8E-11 67.9 5.4 65 43-117 42-115 (304)
85 cd02957 Phd_like Phosducin (Ph 98.2 9.5E-06 2.1E-10 55.3 7.8 66 47-121 28-98 (113)
86 cd03042 GST_N_Zeta GST_N famil 98.2 1.1E-05 2.3E-10 50.2 7.2 70 48-121 2-71 (73)
87 TIGR02187 GlrX_arch Glutaredox 98.2 6.9E-06 1.5E-10 62.2 7.3 64 41-112 17-90 (215)
88 cd02948 TRX_NDPK TRX domain, T 98.2 1.3E-05 2.8E-10 53.7 7.8 69 35-112 7-84 (102)
89 cd02951 SoxW SoxW family; SoxW 98.2 1.2E-05 2.5E-10 55.5 7.7 72 35-109 3-93 (125)
90 cd03076 GST_N_Pi GST_N family, 98.2 2.3E-05 4.9E-10 49.4 8.4 70 46-122 1-70 (73)
91 cd02986 DLP Dim1 family, Dim1- 98.2 9E-06 1.9E-10 56.3 6.8 61 44-112 14-81 (114)
92 cd02984 TRX_PICOT TRX domain, 98.1 1.6E-05 3.4E-10 52.0 7.6 58 47-112 18-81 (97)
93 PRK10996 thioredoxin 2; Provis 98.1 1.9E-05 4.2E-10 56.0 8.1 71 34-112 41-119 (139)
94 cd02996 PDI_a_ERp44 PDIa famil 98.1 1.1E-05 2.4E-10 54.2 6.5 67 36-110 9-89 (108)
95 cd02963 TRX_DnaJ TRX domain, D 98.1 2.2E-05 4.8E-10 53.4 7.9 59 47-113 28-93 (111)
96 cd03003 PDI_a_ERdj5_N PDIa fam 98.1 1.2E-05 2.6E-10 53.3 6.2 68 37-112 10-85 (101)
97 PF13098 Thioredoxin_2: Thiore 98.1 1.4E-05 2.9E-10 53.8 6.3 70 46-118 8-105 (112)
98 cd02987 Phd_like_Phd Phosducin 98.1 1.1E-05 2.3E-10 59.7 6.2 92 35-135 71-175 (175)
99 COG1393 ArsC Arsenate reductas 98.1 1.6E-05 3.5E-10 55.3 6.6 40 46-85 2-41 (117)
100 PF13409 GST_N_2: Glutathione 98.1 9E-06 1.9E-10 51.0 4.9 67 54-123 1-68 (70)
101 cd02950 TxlA TRX-like protein 98.1 3.5E-05 7.7E-10 54.9 8.4 66 39-112 14-90 (142)
102 cd03080 GST_N_Metaxin_like GST 98.1 3.1E-05 6.8E-10 48.9 7.3 62 47-122 2-70 (75)
103 KOG3029 Glutathione S-transfer 98.1 2E-05 4.3E-10 62.3 7.5 67 46-121 90-156 (370)
104 cd03000 PDI_a_TMX3 PDIa family 98.1 2E-05 4.3E-10 52.7 6.7 68 34-109 5-81 (104)
105 cd03039 GST_N_Sigma_like GST_N 98.0 2.7E-05 5.8E-10 48.6 6.8 70 47-122 1-70 (72)
106 cd02965 HyaE HyaE family; HyaE 98.0 3.2E-05 6.9E-10 53.3 7.7 63 46-116 30-100 (111)
107 cd02962 TMX2 TMX2 family; comp 98.0 3.1E-05 6.7E-10 56.1 8.0 75 36-115 36-124 (152)
108 TIGR01068 thioredoxin thioredo 98.0 2.8E-05 6.2E-10 50.6 7.2 58 47-112 18-81 (101)
109 cd03038 GST_N_etherase_LigE GS 98.0 1.3E-05 2.9E-10 51.7 5.5 66 53-123 14-80 (84)
110 cd03048 GST_N_Ure2p_like GST_N 98.0 6.5E-05 1.4E-09 47.9 8.6 71 47-122 2-75 (81)
111 cd03034 ArsC_ArsC Arsenate Red 98.0 1.6E-05 3.5E-10 54.6 6.0 38 47-84 1-38 (112)
112 TIGR00014 arsC arsenate reduct 98.0 1.9E-05 4.1E-10 54.5 6.2 39 47-85 1-39 (114)
113 cd02999 PDI_a_ERp44_like PDIa 98.0 2.6E-05 5.6E-10 52.3 6.6 53 47-106 22-77 (100)
114 cd03005 PDI_a_ERp46 PDIa famil 98.0 2.2E-05 4.7E-10 51.7 6.0 68 37-112 9-86 (102)
115 KOG0907 Thioredoxin [Posttrans 98.0 1.4E-05 2.9E-10 54.7 5.0 58 46-111 23-86 (106)
116 PRK10026 arsenate reductase; P 98.0 2.7E-05 5.9E-10 55.8 6.7 39 45-83 2-40 (141)
117 PRK09481 sspA stringent starva 98.0 6.3E-05 1.4E-09 56.4 9.0 71 45-122 9-79 (211)
118 cd02956 ybbN ybbN protein fami 98.0 0.00011 2.3E-09 48.1 9.1 58 47-112 16-79 (96)
119 cd01659 TRX_superfamily Thiore 98.0 2.2E-05 4.8E-10 45.4 5.2 56 47-109 1-61 (69)
120 TIGR02182 GRXB Glutaredoxin, G 98.0 3.4E-05 7.3E-10 58.0 7.4 69 48-124 1-70 (209)
121 cd03004 PDI_a_ERdj5_C PDIa fam 98.0 2.9E-05 6.3E-10 51.6 6.3 65 37-109 10-83 (104)
122 cd03006 PDI_a_EFP1_N PDIa fami 98.0 2.5E-05 5.4E-10 53.8 6.1 61 42-110 26-95 (113)
123 cd03050 GST_N_Theta GST_N fami 98.0 0.00012 2.6E-09 46.1 8.6 72 47-122 1-72 (76)
124 TIGR01616 nitro_assoc nitrogen 98.0 3.5E-05 7.5E-10 54.2 6.6 36 46-81 2-37 (126)
125 cd02959 ERp19 Endoplasmic reti 98.0 4.7E-05 1E-09 52.6 7.2 74 33-113 7-91 (117)
126 PRK10853 putative reductase; P 97.9 3E-05 6.5E-10 53.9 6.0 35 47-81 2-36 (118)
127 PRK10387 glutaredoxin 2; Provi 97.9 4.8E-05 1E-09 56.5 7.5 70 47-124 1-71 (210)
128 cd03044 GST_N_EF1Bgamma GST_N 97.9 7.5E-05 1.6E-09 47.1 7.1 70 48-122 2-72 (75)
129 cd02961 PDI_a_family Protein D 97.9 0.00014 3E-09 46.9 8.0 62 37-106 7-76 (101)
130 COG4545 Glutaredoxin-related p 97.9 4.3E-05 9.3E-10 49.0 5.2 69 47-119 4-82 (85)
131 PRK10877 protein disulfide iso 97.9 8.5E-05 1.8E-09 57.2 8.0 70 46-118 110-220 (232)
132 cd03002 PDI_a_MPD1_like PDI fa 97.9 0.00011 2.3E-09 49.1 7.6 56 46-107 21-80 (109)
133 cd02997 PDI_a_PDIR PDIa family 97.8 7.5E-05 1.6E-09 49.2 6.5 69 38-112 10-88 (104)
134 TIGR01126 pdi_dom protein disu 97.8 4.6E-05 1E-09 49.9 5.3 62 37-106 5-74 (102)
135 cd02952 TRP14_like Human TRX-r 97.8 3.8E-05 8.1E-10 53.5 5.0 65 47-114 25-105 (119)
136 cd02955 SSP411 TRX domain, SSP 97.8 0.00025 5.3E-09 49.7 9.2 75 36-113 6-95 (124)
137 cd02993 PDI_a_APS_reductase PD 97.8 0.00018 4E-09 48.5 7.8 55 46-106 24-83 (109)
138 cd03001 PDI_a_P5 PDIa family, 97.8 0.00012 2.6E-09 48.2 6.8 51 47-105 22-76 (103)
139 TIGR02740 TraF-like TraF-like 97.8 0.0002 4.3E-09 56.4 9.0 69 36-107 159-235 (271)
140 cd02988 Phd_like_VIAF Phosduci 97.8 7.3E-05 1.6E-09 56.1 6.2 98 27-135 82-192 (192)
141 cd03065 PDI_b_Calsequestrin_N 97.8 0.00014 3.1E-09 50.7 7.0 69 35-113 16-101 (120)
142 cd03047 GST_N_2 GST_N family, 97.7 0.00031 6.8E-09 43.9 7.7 70 48-121 2-71 (73)
143 cd02998 PDI_a_ERp38 PDIa famil 97.7 0.00014 3E-09 47.8 6.0 54 47-107 22-81 (105)
144 KOG4023 Uncharacterized conser 97.6 8.1E-05 1.8E-09 50.1 4.1 84 46-132 3-97 (108)
145 cd03057 GST_N_Beta GST_N famil 97.6 0.0004 8.6E-09 43.7 7.2 70 48-122 2-72 (77)
146 PF13899 Thioredoxin_7: Thiore 97.6 0.00025 5.5E-09 45.5 6.0 66 33-107 5-79 (82)
147 PLN00410 U5 snRNP protein, DIM 97.6 0.0001 2.3E-09 52.8 4.3 71 33-110 9-89 (142)
148 PRK15113 glutathione S-transfe 97.6 0.00059 1.3E-08 51.2 8.5 74 45-122 4-79 (214)
149 TIGR00862 O-ClC intracellular 97.6 0.00082 1.8E-08 52.0 9.4 64 53-123 17-80 (236)
150 cd02992 PDI_a_QSOX PDIa family 97.6 0.00039 8.5E-09 47.6 6.8 65 37-107 10-84 (114)
151 cd03043 GST_N_1 GST_N family, 97.6 0.00087 1.9E-08 42.1 7.9 65 52-121 7-71 (73)
152 PTZ00062 glutaredoxin; Provisi 97.5 0.00035 7.6E-09 53.0 6.7 67 34-116 5-79 (204)
153 PRK13728 conjugal transfer pro 97.5 0.00041 8.9E-09 51.7 6.9 62 46-110 72-148 (181)
154 cd03046 GST_N_GTT1_like GST_N 97.5 0.001 2.3E-08 41.4 7.8 71 48-123 2-72 (76)
155 PF13728 TraF: F plasmid trans 97.5 0.00043 9.2E-09 52.8 6.9 72 32-107 109-189 (215)
156 TIGR02738 TrbB type-F conjugat 97.5 0.00073 1.6E-08 49.0 7.7 39 42-80 49-91 (153)
157 PTZ00443 Thioredoxin domain-co 97.5 0.00033 7.2E-09 53.8 6.1 59 46-112 55-119 (224)
158 cd03020 DsbA_DsbC_DsbG DsbA fa 97.4 0.001 2.2E-08 49.5 8.3 24 44-67 78-101 (197)
159 PF03960 ArsC: ArsC family; I 97.4 0.0004 8.7E-09 47.3 5.2 46 50-95 1-46 (110)
160 PF14595 Thioredoxin_9: Thiore 97.4 3E-05 6.4E-10 54.7 -0.5 78 31-115 29-114 (129)
161 PLN02473 glutathione S-transfe 97.3 0.0021 4.6E-08 47.9 8.5 72 47-122 3-74 (214)
162 PLN02378 glutathione S-transfe 97.3 0.0016 3.5E-08 49.0 7.7 64 53-123 18-81 (213)
163 TIGR01262 maiA maleylacetoacet 97.2 0.00079 1.7E-08 49.9 5.7 71 49-122 2-72 (210)
164 PLN02817 glutathione dehydroge 97.2 0.0015 3.2E-08 51.3 7.3 80 32-122 54-133 (265)
165 cd02995 PDI_a_PDI_a'_C PDIa fa 97.2 0.0011 2.3E-08 43.4 5.7 52 47-107 22-79 (104)
166 cd03007 PDI_a_ERp29_N PDIa fam 97.2 0.0053 1.2E-07 42.6 8.8 71 35-110 8-91 (116)
167 cd03009 TryX_like_TryX_NRX Try 97.2 0.0035 7.6E-08 43.2 8.0 62 46-112 21-113 (131)
168 PRK15412 thiol:disulfide inter 97.1 0.0035 7.6E-08 46.3 8.2 34 46-79 71-105 (185)
169 KOG0406 Glutathione S-transfer 97.1 0.0042 9.1E-08 48.0 8.4 73 45-124 8-81 (231)
170 PRK00293 dipZ thiol:disulfide 97.1 0.0021 4.6E-08 55.5 7.5 72 35-111 464-547 (571)
171 cd02964 TryX_like_family Trypa 97.1 0.0028 6E-08 44.0 6.7 63 47-112 21-113 (132)
172 TIGR02739 TraF type-F conjugat 97.0 0.0026 5.7E-08 49.8 7.1 73 32-107 139-219 (256)
173 PTZ00102 disulphide isomerase; 97.0 0.0021 4.6E-08 53.4 6.7 69 35-111 39-118 (477)
174 cd02972 DsbA_family DsbA famil 97.0 0.0031 6.8E-08 40.1 6.1 61 47-110 1-92 (98)
175 cd03010 TlpA_like_DsbE TlpA-li 97.0 0.004 8.8E-08 42.6 6.8 23 46-68 28-50 (127)
176 TIGR01130 ER_PDI_fam protein d 97.0 0.0046 1E-07 50.8 8.3 69 35-111 8-87 (462)
177 TIGR00424 APS_reduc 5'-adenyly 96.9 0.0051 1.1E-07 52.0 8.2 67 36-110 359-439 (463)
178 cd03008 TryX_like_RdCVF Trypar 96.9 0.0093 2E-07 42.9 8.5 21 47-67 29-49 (146)
179 PLN02309 5'-adenylylsulfate re 96.9 0.0055 1.2E-07 51.7 8.2 57 46-109 368-432 (457)
180 cd02958 UAS UAS family; UAS is 96.9 0.0043 9.3E-08 42.1 6.3 74 32-112 4-91 (114)
181 cd03077 GST_N_Alpha GST_N fami 96.9 0.0056 1.2E-07 39.0 6.5 68 47-121 2-71 (79)
182 KOG0908 Thioredoxin-like prote 96.8 0.0029 6.4E-08 49.4 5.7 71 34-112 9-87 (288)
183 COG0625 Gst Glutathione S-tran 96.8 0.0039 8.5E-08 46.4 6.2 71 48-123 2-73 (211)
184 PF13905 Thioredoxin_8: Thiore 96.8 0.012 2.5E-07 38.2 7.8 45 46-90 4-54 (95)
185 TIGR00385 dsbE periplasmic pro 96.8 0.0046 9.9E-08 45.1 6.3 23 46-68 66-88 (173)
186 KOG0190 Protein disulfide isom 96.8 0.003 6.6E-08 53.6 5.8 76 28-111 25-111 (493)
187 cd02982 PDI_b'_family Protein 96.8 0.0025 5.3E-08 41.9 4.2 56 44-107 13-74 (103)
188 PF06764 DUF1223: Protein of u 96.7 0.0029 6.3E-08 47.9 5.0 69 47-116 2-86 (202)
189 cd03011 TlpA_like_ScsD_MtbDsbE 96.7 0.0034 7.3E-08 42.6 4.9 25 45-69 22-46 (123)
190 PRK10357 putative glutathione 96.7 0.0066 1.4E-07 44.8 6.8 68 48-122 2-70 (202)
191 cd03023 DsbA_Com1_like DsbA fa 96.7 0.009 1.9E-07 41.6 7.1 24 44-67 6-29 (154)
192 smart00594 UAS UAS domain. 96.6 0.026 5.6E-07 38.9 8.6 75 28-108 10-94 (122)
193 PRK13703 conjugal pilus assemb 96.6 0.009 2E-07 46.6 6.8 72 33-107 133-212 (248)
194 TIGR02661 MauD methylamine deh 96.6 0.012 2.6E-07 43.6 7.2 31 46-76 77-111 (189)
195 cd03078 GST_N_Metaxin1_like GS 96.5 0.018 3.9E-07 36.4 6.9 57 53-123 14-70 (73)
196 PLN02395 glutathione S-transfe 96.5 0.016 3.4E-07 43.1 7.6 72 47-123 3-74 (215)
197 KOG1422 Intracellular Cl- chan 96.5 0.015 3.2E-07 44.3 7.3 62 54-122 20-81 (221)
198 cd02966 TlpA_like_family TlpA- 96.5 0.01 2.2E-07 38.5 5.8 25 43-67 19-43 (116)
199 PRK03147 thiol-disulfide oxido 96.4 0.022 4.8E-07 40.8 7.4 66 44-112 62-152 (173)
200 PF07315 DUF1462: Protein of u 96.4 0.029 6.3E-07 37.1 7.1 67 48-116 1-82 (93)
201 PRK13972 GSH-dependent disulfi 96.4 0.024 5.2E-07 42.3 7.8 71 47-122 2-79 (215)
202 KOG2501 Thioredoxin, nucleored 96.3 0.02 4.4E-07 41.7 6.9 71 39-112 28-129 (157)
203 cd02967 mauD Methylamine utili 96.3 0.011 2.4E-07 39.5 5.1 56 46-106 24-83 (114)
204 PRK11752 putative S-transferas 96.1 0.037 8.1E-07 43.1 7.8 77 41-122 39-125 (264)
205 PF02798 GST_N: Glutathione S- 96.1 0.068 1.5E-06 33.6 7.7 68 47-121 3-73 (76)
206 KOG4277 Uncharacterized conser 96.1 0.0099 2.1E-07 47.9 4.4 75 33-112 32-112 (468)
207 PTZ00102 disulphide isomerase; 96.0 0.0091 2E-07 49.6 4.4 51 47-105 379-435 (477)
208 COG2143 Thioredoxin-related pr 95.9 0.032 7E-07 40.9 6.1 75 33-110 30-125 (182)
209 cd02960 AGR Anterior Gradient 95.9 0.015 3.2E-07 41.2 4.3 33 33-65 11-45 (130)
210 COG2999 GrxB Glutaredoxin 2 [P 95.8 0.016 3.4E-07 43.3 4.2 69 48-124 2-71 (215)
211 cd03079 GST_N_Metaxin2 GST_N f 95.8 0.088 1.9E-06 33.6 7.2 57 53-122 15-71 (74)
212 KOG3425 Uncharacterized conser 95.7 0.011 2.4E-07 41.2 2.9 28 53-80 43-76 (128)
213 COG3019 Predicted metal-bindin 95.6 0.079 1.7E-06 38.0 6.9 71 43-120 24-95 (149)
214 cd03012 TlpA_like_DipZ_like Tl 95.4 0.12 2.5E-06 35.4 7.4 23 46-68 26-48 (126)
215 KOG0868 Glutathione S-transfer 95.4 0.047 1E-06 40.9 5.5 70 50-124 11-80 (217)
216 cd03075 GST_N_Mu GST_N family, 95.4 0.2 4.3E-06 32.0 8.0 71 49-122 3-78 (82)
217 COG4232 Thiol:disulfide interc 95.3 0.044 9.6E-07 47.3 5.9 83 22-108 448-542 (569)
218 TIGR03143 AhpF_homolog putativ 95.2 0.075 1.6E-06 45.7 6.9 71 27-107 346-425 (555)
219 COG5494 Predicted thioredoxin/ 95.2 0.084 1.8E-06 40.5 6.3 57 46-112 12-70 (265)
220 COG3634 AhpF Alkyl hydroperoxi 95.1 0.06 1.3E-06 44.5 5.9 84 24-115 97-183 (520)
221 PHA03075 glutaredoxin-like pro 95.1 0.036 7.7E-07 38.5 3.7 35 45-79 3-37 (123)
222 PRK10542 glutathionine S-trans 95.0 0.096 2.1E-06 38.4 6.2 71 48-122 2-73 (201)
223 KOG0912 Thiol-disulfide isomer 95.0 0.034 7.4E-07 44.8 3.9 69 36-112 4-85 (375)
224 PTZ00057 glutathione s-transfe 95.0 0.17 3.7E-06 37.5 7.6 74 45-121 3-78 (205)
225 PRK14018 trifunctional thiored 94.9 0.054 1.2E-06 46.5 5.3 22 47-68 60-81 (521)
226 KOG4244 Failed axon connection 94.8 0.042 9.1E-07 43.3 4.0 68 40-121 39-113 (281)
227 PF06110 DUF953: Eukaryotic pr 94.8 0.006 1.3E-07 42.5 -0.7 52 53-107 36-95 (119)
228 PF02114 Phosducin: Phosducin; 94.8 0.048 1E-06 42.9 4.3 80 47-137 150-240 (265)
229 COG4837 Uncharacterized protei 94.8 0.1 2.2E-06 34.9 5.1 72 43-116 3-89 (106)
230 PRK11657 dsbG disulfide isomer 94.7 0.028 6E-07 43.8 2.8 22 46-67 120-141 (251)
231 PF08534 Redoxin: Redoxin; In 94.7 0.16 3.5E-06 35.3 6.5 35 46-80 31-73 (146)
232 PLN02919 haloacid dehalogenase 94.6 0.15 3.3E-06 47.3 7.7 22 47-68 424-445 (1057)
233 KOG1672 ATP binding protein [P 94.5 0.083 1.8E-06 39.9 4.9 96 34-137 74-180 (211)
234 TIGR01130 ER_PDI_fam protein d 94.3 0.072 1.6E-06 43.7 4.7 51 47-107 368-425 (462)
235 COG5429 Uncharacterized secret 94.3 0.056 1.2E-06 41.9 3.6 63 47-110 45-122 (261)
236 cd00340 GSH_Peroxidase Glutath 94.3 0.16 3.4E-06 36.1 5.8 21 46-67 25-45 (152)
237 PLN02412 probable glutathione 94.2 0.27 5.8E-06 35.6 7.0 22 46-67 32-53 (167)
238 PTZ00256 glutathione peroxidas 93.8 0.21 4.4E-06 36.8 5.7 19 48-66 46-64 (183)
239 COG0526 TrxA Thiol-disulfide i 93.7 0.13 2.8E-06 32.6 4.2 19 50-68 39-57 (127)
240 KOG0867 Glutathione S-transfer 93.6 0.32 6.8E-06 37.1 6.6 74 46-123 2-75 (226)
241 TIGR01626 ytfJ_HI0045 conserve 93.5 0.29 6.3E-06 36.6 6.1 36 45-80 61-105 (184)
242 PLN02399 phospholipid hydroper 93.4 0.39 8.5E-06 37.2 6.9 22 46-67 102-123 (236)
243 cd02969 PRX_like1 Peroxiredoxi 93.1 0.57 1.2E-05 33.7 7.1 22 46-67 28-49 (171)
244 PTZ00056 glutathione peroxidas 93.0 0.44 9.6E-06 35.7 6.6 21 47-67 43-63 (199)
245 TIGR02540 gpx7 putative glutat 93.0 0.52 1.1E-05 33.3 6.6 20 47-66 26-45 (153)
246 cd02970 PRX_like2 Peroxiredoxi 92.8 0.33 7.1E-06 33.5 5.2 23 45-67 25-48 (149)
247 KOG1695 Glutathione S-transfer 92.7 0.7 1.5E-05 35.1 7.2 70 46-122 3-72 (206)
248 PF06953 ArsD: Arsenical resis 92.6 0.82 1.8E-05 32.0 7.0 55 60-117 31-90 (123)
249 PF03190 Thioredox_DsbH: Prote 92.5 0.67 1.5E-05 34.0 6.7 75 35-112 27-116 (163)
250 cd02968 SCO SCO (an acronym fo 92.5 0.66 1.4E-05 31.8 6.5 22 45-66 24-46 (142)
251 PF10568 Tom37: Outer mitochon 92.4 0.7 1.5E-05 29.1 5.9 55 54-122 13-71 (72)
252 KOG0190 Protein disulfide isom 92.1 0.12 2.6E-06 44.0 2.7 37 36-72 374-413 (493)
253 cd05295 MDH_like Malate dehydr 91.7 0.47 1E-05 40.2 5.7 71 52-123 1-82 (452)
254 TIGR03137 AhpC peroxiredoxin. 91.1 0.63 1.4E-05 34.3 5.3 34 45-78 32-74 (187)
255 KOG0191 Thioredoxin/protein di 91.0 0.33 7.1E-06 39.7 4.1 59 43-109 47-111 (383)
256 PF00578 AhpC-TSA: AhpC/TSA fa 90.5 1.5 3.3E-05 29.1 6.5 62 40-107 22-89 (124)
257 KOG0913 Thiol-disulfide isomer 90.5 0.044 9.6E-07 42.4 -1.4 70 33-112 29-107 (248)
258 cd03019 DsbA_DsbA DsbA family, 90.1 0.27 5.8E-06 35.1 2.5 23 44-66 16-38 (178)
259 COG3340 PepE Peptidase E [Amin 89.8 6.1 0.00013 30.4 9.7 95 31-138 17-121 (224)
260 cd03016 PRX_1cys Peroxiredoxin 89.4 0.98 2.1E-05 33.8 5.2 35 45-79 26-69 (203)
261 PF04134 DUF393: Protein of un 89.4 2.6 5.6E-05 28.1 6.9 71 49-124 1-76 (114)
262 PF13462 Thioredoxin_4: Thiore 89.4 0.32 6.9E-06 34.1 2.5 33 45-77 14-54 (162)
263 cd03018 PRX_AhpE_like Peroxire 89.1 2.3 4.9E-05 29.4 6.6 21 47-67 32-53 (149)
264 PF13462 Thioredoxin_4: Thiore 89.0 0.73 1.6E-05 32.2 4.1 27 91-120 129-155 (162)
265 KOG3414 Component of the U4/U6 88.6 2.7 5.8E-05 29.8 6.5 73 30-112 6-90 (142)
266 cd03017 PRX_BCP Peroxiredoxin 88.5 1.6 3.5E-05 29.8 5.5 19 47-65 27-46 (140)
267 cd03015 PRX_Typ2cys Peroxiredo 88.4 1.3 2.8E-05 31.9 5.2 23 45-67 30-54 (173)
268 PRK11509 hydrogenase-1 operon 87.5 1.5 3.3E-05 31.0 4.9 62 46-115 36-107 (132)
269 cd02971 PRX_family Peroxiredox 87.3 1.4 3.1E-05 30.0 4.6 22 46-67 25-47 (140)
270 PF11009 DUF2847: Protein of u 87.2 4 8.7E-05 27.8 6.6 66 42-112 17-91 (105)
271 KOG0191 Thioredoxin/protein di 87.2 1.5 3.2E-05 36.0 5.3 56 43-106 162-223 (383)
272 COG2761 FrnE Predicted dithiol 86.8 1.2 2.6E-05 34.4 4.2 51 46-96 7-69 (225)
273 cd03014 PRX_Atyp2cys Peroxired 86.6 1.4 3E-05 30.4 4.3 25 43-67 26-51 (143)
274 KOG3171 Conserved phosducin-li 86.1 2 4.4E-05 33.2 5.1 80 50-138 166-254 (273)
275 KOG1731 FAD-dependent sulfhydr 85.8 0.3 6.6E-06 42.3 0.6 78 34-114 45-138 (606)
276 TIGR01162 purE phosphoribosyla 85.7 3.9 8.3E-05 29.8 6.2 74 47-123 3-100 (156)
277 PRK13599 putative peroxiredoxi 84.4 2 4.2E-05 32.7 4.4 32 49-80 35-73 (215)
278 PRK13190 putative peroxiredoxi 84.3 2 4.2E-05 32.2 4.3 21 46-66 29-51 (202)
279 COG3011 Predicted thiol-disulf 84.2 13 0.00028 26.6 8.5 76 43-121 6-82 (137)
280 PRK10382 alkyl hydroperoxide r 83.9 2.1 4.5E-05 31.8 4.3 20 46-65 33-54 (187)
281 TIGR03759 conj_TIGR03759 integ 83.8 2.7 5.8E-05 31.8 4.8 43 43-85 108-150 (200)
282 PF10865 DUF2703: Domain of un 83.7 3.1 6.7E-05 29.0 4.8 48 54-112 14-72 (120)
283 COG0041 PurE Phosphoribosylcar 82.4 6.5 0.00014 28.7 6.2 76 47-122 7-103 (162)
284 PRK10606 btuE putative glutath 82.3 6.7 0.00015 29.1 6.5 21 40-60 22-42 (183)
285 PRK13189 peroxiredoxin; Provis 81.1 3.2 7E-05 31.6 4.6 36 44-79 35-79 (222)
286 PRK00522 tpx lipid hydroperoxi 81.1 4.2 9.2E-05 29.3 5.0 22 46-67 47-69 (167)
287 PRK09437 bcp thioredoxin-depen 80.9 4.7 0.0001 28.2 5.1 19 44-62 30-50 (154)
288 PRK15000 peroxidase; Provision 80.2 5.6 0.00012 29.7 5.5 24 43-66 33-58 (200)
289 PRK13191 putative peroxiredoxi 78.4 4.5 9.7E-05 30.7 4.5 39 44-82 33-80 (215)
290 PF09822 ABC_transp_aux: ABC-t 78.0 7.5 0.00016 30.1 5.8 66 30-98 12-88 (271)
291 cd03022 DsbA_HCCA_Iso DsbA fam 77.9 4 8.7E-05 29.4 4.0 26 93-121 162-187 (192)
292 cd02991 UAS_ETEA UAS family, E 77.2 20 0.00044 24.4 7.6 66 32-107 4-83 (116)
293 PF01323 DSBA: DSBA-like thior 76.7 2.4 5.2E-05 30.5 2.5 32 46-77 1-37 (193)
294 TIGR01689 EcbF-BcbF capsule bi 76.1 9.3 0.0002 26.7 5.3 52 29-80 24-88 (126)
295 PF12689 Acid_PPase: Acid Phos 74.5 22 0.00049 26.0 7.2 76 31-111 47-134 (169)
296 PRK10954 periplasmic protein d 73.6 5.6 0.00012 29.7 3.9 20 44-63 38-57 (207)
297 PTZ00137 2-Cys peroxiredoxin; 73.5 12 0.00025 29.5 5.8 42 38-79 92-142 (261)
298 PF15643 Tox-PL-2: Papain fold 71.9 11 0.00023 25.5 4.5 26 54-79 20-46 (100)
299 COG1651 DsbG Protein-disulfide 71.9 14 0.0003 27.9 5.8 24 44-67 85-108 (244)
300 cd03021 DsbA_GSTK DsbA family, 71.8 6.2 0.00013 29.3 3.8 21 46-66 2-22 (209)
301 PF01323 DSBA: DSBA-like thior 70.7 6.8 0.00015 28.1 3.7 28 91-121 160-188 (193)
302 cd03019 DsbA_DsbA DsbA family, 70.5 6.7 0.00015 27.7 3.6 24 91-117 136-159 (178)
303 PF03575 Peptidase_S51: Peptid 69.8 15 0.00032 26.0 5.3 64 57-133 1-64 (154)
304 PF04566 RNA_pol_Rpb2_4: RNA p 69.8 9.3 0.0002 23.4 3.6 18 105-122 1-18 (63)
305 KOG4420 Uncharacterized conser 69.7 3.7 8E-05 32.7 2.2 74 47-124 27-100 (325)
306 PRK10954 periplasmic protein d 69.1 3.4 7.3E-05 30.9 1.8 23 92-117 161-183 (207)
307 KOG0914 Thioredoxin-like prote 69.1 8.6 0.00019 29.9 4.0 74 36-113 133-219 (265)
308 cd03013 PRX5_like Peroxiredoxi 68.2 14 0.00031 26.2 4.9 19 43-61 28-48 (155)
309 cd02974 AhpF_NTD_N Alkyl hydro 66.2 8.6 0.00019 25.4 3.1 37 31-68 3-43 (94)
310 PF11287 DUF3088: Protein of u 65.9 7.6 0.00017 26.8 2.9 51 54-109 23-76 (112)
311 PTZ00253 tryparedoxin peroxida 64.7 18 0.0004 26.7 5.1 42 39-80 32-81 (199)
312 cd03025 DsbA_FrnE_like DsbA fa 64.3 4.3 9.3E-05 29.3 1.5 21 46-66 2-22 (193)
313 PLN02590 probable tyrosine dec 63.1 58 0.0012 28.3 8.4 80 45-135 228-317 (539)
314 COG1651 DsbG Protein-disulfide 62.9 11 0.00024 28.4 3.7 28 90-120 207-234 (244)
315 PF03227 GILT: Gamma interfero 62.1 7.4 0.00016 26.2 2.3 16 46-61 2-17 (108)
316 cd06387 PBP1_iGluR_AMPA_GluR3 62.0 34 0.00074 28.0 6.6 88 31-121 49-146 (372)
317 PRK00994 F420-dependent methyl 61.2 50 0.0011 26.0 6.9 104 26-139 40-152 (277)
318 cd03024 DsbA_FrnE DsbA family, 60.6 25 0.00055 25.4 5.1 25 93-120 170-195 (201)
319 cd06388 PBP1_iGluR_AMPA_GluR4 58.1 55 0.0012 26.6 7.1 88 31-122 49-147 (371)
320 cd03022 DsbA_HCCA_Iso DsbA fam 56.3 9.2 0.0002 27.4 2.1 27 47-73 1-31 (192)
321 PF00731 AIRC: AIR carboxylase 55.2 19 0.0004 26.1 3.5 42 52-93 10-51 (150)
322 COG1927 Mtd Coenzyme F420-depe 53.2 70 0.0015 24.8 6.4 100 29-138 43-151 (277)
323 PRK15317 alkyl hydroperoxide r 51.0 17 0.00037 30.9 3.2 38 30-68 2-43 (517)
324 cd06381 PBP1_iGluR_delta_like 50.9 1.2E+02 0.0026 24.5 8.1 43 32-74 49-91 (363)
325 PRK00766 hypothetical protein; 48.3 32 0.00069 25.9 3.9 52 69-123 42-95 (194)
326 cd03024 DsbA_FrnE DsbA family, 48.2 11 0.00024 27.3 1.4 20 47-66 1-20 (201)
327 PRK05282 (alpha)-aspartyl dipe 47.4 1.3E+02 0.0028 23.2 9.2 89 28-133 14-108 (233)
328 KOG2603 Oligosaccharyltransfer 47.2 33 0.00072 27.9 4.0 52 47-108 64-133 (331)
329 cd06389 PBP1_iGluR_AMPA_GluR2 45.9 81 0.0018 25.5 6.3 86 31-120 43-139 (370)
330 PF09673 TrbC_Ftype: Type-F co 45.8 68 0.0015 21.7 5.0 73 27-110 6-80 (113)
331 KOG3027 Mitochondrial outer me 44.6 32 0.00069 26.6 3.4 59 53-124 32-90 (257)
332 TIGR03140 AhpF alkyl hydropero 44.6 26 0.00057 29.8 3.3 37 31-68 3-43 (515)
333 cd06390 PBP1_iGluR_AMPA_GluR1 44.3 1.5E+02 0.0032 24.1 7.6 87 32-121 43-139 (364)
334 TIGR02742 TrbC_Ftype type-F co 44.0 65 0.0014 22.6 4.7 71 27-108 7-78 (130)
335 PF00004 AAA: ATPase family as 43.2 39 0.00085 22.1 3.5 33 47-79 1-33 (132)
336 PF09413 DUF2007: Domain of un 42.9 23 0.0005 21.2 2.1 53 47-110 1-53 (67)
337 TIGR00853 pts-lac PTS system, 41.8 75 0.0016 20.8 4.6 30 84-116 61-90 (95)
338 cd05564 PTS_IIB_chitobiose_lic 41.7 74 0.0016 20.7 4.6 30 84-116 57-86 (96)
339 PF00282 Pyridoxal_deC: Pyrido 41.3 61 0.0013 26.5 4.9 72 44-120 139-215 (373)
340 TIGR03865 PQQ_CXXCW PQQ-depend 41.0 44 0.00096 24.0 3.7 29 43-71 115-143 (162)
341 COG2179 Predicted hydrolase of 40.2 1.5E+02 0.0033 22.0 7.0 60 29-93 46-106 (175)
342 cd03129 GAT1_Peptidase_E_like 39.8 1.5E+02 0.0033 21.8 10.5 86 35-132 19-109 (210)
343 KOG2454 Betaine aldehyde dehyd 39.6 51 0.0011 28.0 4.1 40 38-77 210-254 (583)
344 COG1331 Highly conserved prote 39.0 1.3E+02 0.0028 27.1 6.7 69 34-105 32-112 (667)
345 PTZ00494 tuzin-like protein; P 39.0 1.3E+02 0.0028 26.4 6.5 71 33-112 378-454 (664)
346 cd03035 ArsC_Yffb Arsenate Red 38.9 33 0.00071 22.9 2.5 16 102-117 90-105 (105)
347 PF07449 HyaE: Hydrogenase-1 e 38.8 47 0.001 22.6 3.3 69 44-120 26-103 (107)
348 PF10087 DUF2325: Uncharacteri 38.6 1E+02 0.0022 19.9 4.9 41 35-75 39-81 (97)
349 PF07908 D-aminoacyl_C: D-amin 38.6 25 0.00055 20.2 1.7 16 100-115 18-33 (48)
350 TIGR03190 benz_CoA_bzdN benzoy 38.3 1.4E+02 0.003 24.5 6.5 34 47-80 317-354 (377)
351 PRK04195 replication factor C 38.1 2.4E+02 0.0051 23.9 8.1 47 33-79 21-74 (482)
352 PRK10670 hypothetical protein; 36.9 69 0.0015 23.0 4.1 48 60-107 3-50 (159)
353 cd00291 SirA_YedF_YeeD SirA, Y 36.8 62 0.0013 19.2 3.4 43 32-75 14-56 (69)
354 PF14437 MafB19-deam: MafB19-l 36.2 1.3E+02 0.0029 21.6 5.4 28 45-72 100-129 (146)
355 cd04336 YeaK YeaK is an unchar 36.0 1.1E+02 0.0023 21.3 5.0 46 59-108 2-47 (153)
356 TIGR00011 YbaK_EbsC ybaK/ebsC 35.4 75 0.0016 22.2 4.1 48 60-108 2-49 (152)
357 cd03145 GAT1_cyanophycinase Ty 35.3 1.9E+02 0.0041 21.6 9.3 77 45-133 30-112 (217)
358 PF08534 Redoxin: Redoxin; In 35.1 1.4E+02 0.0031 20.1 6.6 58 36-107 52-120 (146)
359 PLN02958 diacylglycerol kinase 35.1 2.2E+02 0.0047 24.4 7.4 43 43-85 110-159 (481)
360 cd05565 PTS_IIB_lactose PTS_II 35.1 68 0.0015 21.4 3.6 30 81-113 55-84 (99)
361 PF00763 THF_DHG_CYH: Tetrahyd 35.0 1.4E+02 0.0031 20.1 7.3 65 34-98 16-87 (117)
362 PLN02263 serine decarboxylase 34.9 1.5E+02 0.0032 25.4 6.4 75 48-136 180-259 (470)
363 PRK09590 celB cellobiose phosp 34.6 1.2E+02 0.0026 20.3 4.8 56 56-114 16-88 (104)
364 cd08183 Fe-ADH2 Iron-containin 34.5 2.5E+02 0.0055 22.8 8.3 46 45-90 23-68 (374)
365 TIGR03521 GldG gliding-associa 33.7 1.5E+02 0.0033 25.7 6.3 53 30-82 35-97 (552)
366 cd01444 GlpE_ST GlpE sulfurtra 33.7 97 0.0021 19.2 4.1 39 32-71 44-82 (96)
367 PF07728 AAA_5: AAA domain (dy 33.3 1E+02 0.0022 20.7 4.4 40 46-85 1-40 (139)
368 KOG1734 Predicted RING-contain 33.1 20 0.00044 28.6 0.9 10 52-61 270-279 (328)
369 PF08262 Lem_TRP: Leucophaea m 33.1 18 0.00039 14.1 0.3 7 1-7 4-10 (10)
370 PF11399 DUF3192: Protein of u 32.3 36 0.00077 23.1 1.8 16 101-116 81-96 (102)
371 TIGR00014 arsC arsenate reduct 32.3 93 0.002 20.9 4.0 16 102-117 92-107 (114)
372 PF06053 DUF929: Domain of unk 31.9 29 0.00063 27.2 1.5 30 41-70 54-89 (249)
373 PF13743 Thioredoxin_5: Thiore 31.0 42 0.00091 24.4 2.2 19 49-67 2-20 (176)
374 PF13344 Hydrolase_6: Haloacid 30.9 1.5E+02 0.0033 19.3 4.7 61 31-93 16-77 (101)
375 KOG3160 Gamma-interferon induc 30.8 42 0.0009 25.8 2.2 17 45-61 41-57 (220)
376 cd04335 PrdX_deacylase This CD 30.5 1.4E+02 0.0031 20.9 4.8 45 59-107 2-46 (156)
377 cd03146 GAT1_Peptidase_E Type 30.1 2.3E+02 0.005 21.0 9.4 88 32-134 18-110 (212)
378 PRK01655 spxA transcriptional 29.9 62 0.0014 22.4 2.8 16 102-117 92-107 (131)
379 PRK15348 type III secretion sy 29.8 1E+02 0.0023 24.1 4.3 92 42-135 16-120 (249)
380 TIGR03757 conj_TIGR03757 integ 29.6 1.1E+02 0.0024 21.0 3.9 24 94-120 80-104 (113)
381 KOG3170 Conserved phosducin-li 29.0 98 0.0021 23.9 3.9 66 35-108 99-168 (240)
382 PF13364 BetaGal_dom4_5: Beta- 28.9 48 0.0011 22.3 2.1 15 102-116 64-78 (111)
383 PRK13730 conjugal transfer pil 28.7 1.7E+02 0.0037 22.4 5.1 17 89-108 153-169 (212)
384 cd03409 Chelatase_Class_II Cla 28.6 1.3E+02 0.0029 18.9 4.2 13 101-113 64-76 (101)
385 TIGR00635 ruvB Holliday juncti 28.5 2.8E+02 0.006 21.4 7.2 59 46-110 32-90 (305)
386 PLN02204 diacylglycerol kinase 28.4 3.6E+02 0.0078 24.0 7.7 73 43-120 158-236 (601)
387 PLN00020 ribulose bisphosphate 28.3 1.8E+02 0.0039 24.6 5.6 33 47-79 151-183 (413)
388 cd04333 ProX_deacylase This CD 28.1 1.5E+02 0.0032 20.5 4.6 46 59-107 2-47 (148)
389 TIGR02250 FCP1_euk FCP1-like p 27.3 2.3E+02 0.0049 20.2 5.5 40 30-69 59-98 (156)
390 COG1628 Endonuclease V homolog 27.2 1.6E+02 0.0035 22.1 4.7 51 69-123 41-93 (185)
391 cd08193 HVD 5-hydroxyvalerate 26.7 3.5E+02 0.0075 22.0 7.2 62 45-109 27-92 (376)
392 PF03031 NIF: NLI interacting 26.6 1.1E+02 0.0025 21.1 3.8 43 30-72 37-79 (159)
393 KOG2961 Predicted hydrolase (H 26.0 2.8E+02 0.006 20.6 8.0 90 35-130 70-165 (190)
394 cd00002 YbaK_deacylase This CD 26.0 1.3E+02 0.0029 20.9 4.1 47 60-107 3-49 (152)
395 COG0602 NrdG Organic radical a 25.9 21 0.00046 27.0 -0.2 83 46-138 22-111 (212)
396 cd01520 RHOD_YbbB Member of th 25.7 85 0.0018 21.2 2.9 35 43-79 85-119 (128)
397 PF07912 ERp29_N: ERp29, N-ter 25.0 16 0.00036 25.6 -0.8 48 88-139 71-123 (126)
398 PF01949 DUF99: Protein of unk 24.6 34 0.00074 25.6 0.7 49 70-122 37-87 (187)
399 TIGR03191 benz_CoA_bzdO benzoy 24.5 2.1E+02 0.0045 24.1 5.5 18 62-79 384-401 (430)
400 PF07511 DUF1525: Protein of u 23.9 1.1E+02 0.0024 21.1 3.1 25 94-121 79-104 (114)
401 PF08308 PEGA: PEGA domain; I 23.4 66 0.0014 19.3 1.8 11 104-114 14-24 (71)
402 PF01522 Polysacc_deac_1: Poly 23.1 66 0.0014 21.0 1.9 35 37-72 88-122 (123)
403 PF05673 DUF815: Protein of un 23.0 2.6E+02 0.0057 21.9 5.4 37 44-80 52-89 (249)
404 PF11238 DUF3039: Protein of u 22.9 54 0.0012 19.9 1.2 13 53-65 45-57 (58)
405 PF13353 Fer4_12: 4Fe-4S singl 22.9 68 0.0015 21.6 2.0 14 46-59 7-23 (139)
406 PF05728 UPF0227: Uncharacteri 22.9 1.7E+02 0.0038 21.5 4.3 7 102-108 82-88 (187)
407 cd04911 ACT_AKiii-YclM-BS_1 AC 22.5 77 0.0017 20.2 2.0 20 54-73 14-33 (76)
408 COG4566 TtrR Response regulato 22.4 3.6E+02 0.0077 20.5 6.9 79 33-126 15-99 (202)
409 PF14237 DUF4339: Domain of un 22.3 1.1E+02 0.0024 16.9 2.5 24 105-128 4-29 (45)
410 cd03082 TRX_Fd_NuoE_W_FDH_beta 22.2 1.3E+02 0.0027 18.6 2.9 16 102-117 47-62 (72)
411 TIGR03799 NOD_PanD_pyr putativ 22.1 5.2E+02 0.011 22.3 8.6 80 46-136 209-296 (522)
412 PF09419 PGP_phosphatase: Mito 22.1 3.2E+02 0.007 19.9 8.0 94 27-125 57-157 (168)
413 TIGR02263 benz_CoA_red_C benzo 22.0 2.7E+02 0.0059 22.8 5.6 33 47-79 325-361 (380)
414 PF14424 Toxin-deaminase: The 21.9 2.3E+02 0.005 19.8 4.6 23 45-67 97-120 (133)
415 PF11008 DUF2846: Protein of u 21.7 78 0.0017 21.3 2.0 14 102-115 42-55 (117)
416 PF04805 Pox_E10: E10-like pro 21.7 82 0.0018 19.8 1.9 19 52-70 15-34 (70)
417 PRK09212 pyruvate dehydrogenas 21.4 3E+02 0.0065 22.1 5.7 36 45-80 202-238 (327)
418 cd08551 Fe-ADH iron-containing 21.2 4.4E+02 0.0096 21.2 7.2 49 45-93 24-76 (370)
419 PF02662 FlpD: Methyl-viologen 21.0 2.9E+02 0.0062 18.9 6.0 81 46-136 1-91 (124)
420 PRK12563 sulfate adenylyltrans 20.9 3.1E+02 0.0067 22.2 5.6 65 33-97 25-96 (312)
421 PF02288 Dehydratase_MU: Dehyd 20.9 2.8E+02 0.006 18.9 4.6 42 45-86 3-47 (112)
422 PRK11784 tRNA 2-selenouridine 20.7 4.7E+02 0.01 21.3 6.9 90 28-124 67-163 (345)
423 cd02978 KaiB_like KaiB-like fa 20.5 1.4E+02 0.0031 18.8 2.9 49 47-105 4-59 (72)
424 COG1225 Bcp Peroxiredoxin [Pos 20.4 2.9E+02 0.0064 20.0 4.9 14 46-59 32-47 (157)
425 PF15616 TerY-C: TerY-C metal 20.3 31 0.00068 24.4 -0.2 16 49-64 74-89 (131)
426 KOG4598 Putative ubiquitin-spe 20.2 86 0.0019 28.7 2.4 47 41-97 1051-1098(1203)
427 cd08186 Fe-ADH8 Iron-containin 20.1 4.8E+02 0.01 21.2 8.1 48 45-92 27-79 (383)
428 TIGR02251 HIF-SF_euk Dullard-l 20.0 2.5E+02 0.0055 19.9 4.5 39 30-68 43-81 (162)
No 1
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=99.97 E-value=3.2e-31 Score=179.44 Aligned_cols=98 Identities=62% Similarity=1.086 Sum_probs=94.2
Q ss_pred HHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHH
Q 039295 39 ARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRV 118 (139)
Q Consensus 39 ~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l 118 (139)
+++++.++|+||++++||||.+++++|++++++|.++|||.++++.++++++.+.+|..+ +|+|||||++|||++++
T Consensus 2 ~~~i~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~t---vP~Vfi~g~~iGG~ddl 78 (99)
T TIGR02189 2 RRMVSEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPA---VPAVFVGGKLVGGLENV 78 (99)
T ss_pred hhhhccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCC---cCeEEECCEEEcCHHHH
Confidence 578899999999999999999999999999999999999999998888899999999999 99999999999999999
Q ss_pred HHHHHcCChHHHHHhcCccCC
Q 039295 119 MASHINGTLVPLLKEAGALWL 139 (139)
Q Consensus 119 ~~l~~~g~L~~~L~~~g~~~~ 139 (139)
.+++++|+|.++|+++|++|+
T Consensus 79 ~~l~~~G~L~~~l~~~~~~~~ 99 (99)
T TIGR02189 79 MALHISGSLVPMLKQAGALWL 99 (99)
T ss_pred HHHHHcCCHHHHHHHhCcccC
Confidence 999999999999999999875
No 2
>PHA03050 glutaredoxin; Provisional
Probab=99.97 E-value=3.6e-30 Score=176.86 Aligned_cols=102 Identities=17% Similarity=0.304 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCC---CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCE
Q 039295 34 PMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGV---NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGK 110 (139)
Q Consensus 34 ~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v---~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~ 110 (139)
++++++++++.++|+||++++||||.+++++|+++++ +|++++|+...+..++++++.+.+|..+ ||+|||||+
T Consensus 2 ~~~~v~~~i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~t---VP~IfI~g~ 78 (108)
T PHA03050 2 AEEFVQQRLANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRT---VPRIFFGKT 78 (108)
T ss_pred hHHHHHHHhccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCC---cCEEEECCE
Confidence 4688999999999999999999999999999999999 7999999987777788899999999998 999999999
Q ss_pred EEeccHHHHHHHHcCChHHHHHhcCccC
Q 039295 111 LIGAMDRVMASHINGTLVPLLKEAGALW 138 (139)
Q Consensus 111 ~iGG~~~l~~l~~~g~L~~~L~~~g~~~ 138 (139)
+|||++|+.+++++|+|.++|+++|+++
T Consensus 79 ~iGG~ddl~~l~~~g~L~~~l~~~~~~~ 106 (108)
T PHA03050 79 SIGGYSDLLEIDNMDALGDILSSIGVLR 106 (108)
T ss_pred EEeChHHHHHHHHcCCHHHHHHHccccc
Confidence 9999999999999999999999999986
No 3
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=8.5e-30 Score=173.54 Aligned_cols=102 Identities=54% Similarity=0.894 Sum_probs=99.0
Q ss_pred HHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEe
Q 039295 34 PMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIG 113 (139)
Q Consensus 34 ~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iG 113 (139)
..+++++++++++|+||++++||||+++|.+|...++.+.++++|.++++.+++++|.+.+|+++ +|.|||+|++||
T Consensus 3 ~~~~v~~~i~~~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~t---vP~vFI~Gk~iG 79 (104)
T KOG1752|consen 3 AEAKVRKMISENPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRT---VPNVFIGGKFIG 79 (104)
T ss_pred HHHHHHHHhhcCCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCC---CCEEEECCEEEc
Confidence 56789999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred ccHHHHHHHHcCChHHHHHhcCccC
Q 039295 114 AMDRVMASHINGTLVPLLKEAGALW 138 (139)
Q Consensus 114 G~~~l~~l~~~g~L~~~L~~~g~~~ 138 (139)
|.+++.++|.+|+|.++|+..|++|
T Consensus 80 G~~dl~~lh~~G~L~~~l~~~~~~~ 104 (104)
T KOG1752|consen 80 GASDLMALHKSGELVPLLKEAGALW 104 (104)
T ss_pred CHHHHHHHHHcCCHHHHHHHhhccC
Confidence 9999999999999999999999986
No 4
>PRK10824 glutaredoxin-4; Provisional
Probab=99.96 E-value=1.3e-28 Score=170.67 Aligned_cols=100 Identities=23% Similarity=0.433 Sum_probs=93.5
Q ss_pred cHHHHHHHHhcCCcEEEEEcC-----CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 33 EPMEKVARVASESAVVIFSVS-----SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 33 ~~~~~~~~~i~~~~Vvif~~~-----~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
+..++++++++.++|+||++. +||||++|+++|++++++|.++|++.++ +++++|.+++|++| ||+|||
T Consensus 3 ~~~~~v~~~I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~---~~~~~l~~~sg~~T---VPQIFI 76 (115)
T PRK10824 3 TTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNP---DIRAELPKYANWPT---FPQLWV 76 (115)
T ss_pred hHHHHHHHHHhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCH---HHHHHHHHHhCCCC---CCeEEE
Confidence 477899999999999999994 9999999999999999999999998764 57789999999999 999999
Q ss_pred CCEEEeccHHHHHHHHcCChHHHHHhcCccC
Q 039295 108 GGKLIGAMDRVMASHINGTLVPLLKEAGALW 138 (139)
Q Consensus 108 ~g~~iGG~~~l~~l~~~g~L~~~L~~~g~~~ 138 (139)
||++|||+|++.+++++|+|.++|+++|+.+
T Consensus 77 ~G~~IGG~ddl~~l~~~G~L~~lL~~~~~~~ 107 (115)
T PRK10824 77 DGELVGGCDIVIEMYQRGELQQLIKETAAKY 107 (115)
T ss_pred CCEEEcChHHHHHHHHCCCHHHHHHHHHhhh
Confidence 9999999999999999999999999999865
No 5
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=99.94 E-value=2.9e-26 Score=154.63 Aligned_cols=91 Identities=21% Similarity=0.423 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCcEEEEEc-----CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECC
Q 039295 35 MEKVARVASESAVVIFSV-----SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGG 109 (139)
Q Consensus 35 ~~~~~~~i~~~~Vvif~~-----~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g 109 (139)
.++++++++.++|+||++ ++||||.+++++|++++++|.++||+.++ +++++|.+++|..+ +|+|||||
T Consensus 2 ~~~v~~~i~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~---~~~~~l~~~tg~~t---vP~vfi~g 75 (97)
T TIGR00365 2 IERIKEQIKENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDP---EIRQGIKEYSNWPT---IPQLYVKG 75 (97)
T ss_pred hHHHHHHhccCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCH---HHHHHHHHHhCCCC---CCEEEECC
Confidence 378899999999999998 89999999999999999999999998654 56679999999998 99999999
Q ss_pred EEEeccHHHHHHHHcCChHHHH
Q 039295 110 KLIGAMDRVMASHINGTLVPLL 131 (139)
Q Consensus 110 ~~iGG~~~l~~l~~~g~L~~~L 131 (139)
++|||++++.+++++|+|.++|
T Consensus 76 ~~iGG~ddl~~l~~~g~L~~~l 97 (97)
T TIGR00365 76 EFVGGCDIIMEMYQSGELQTLL 97 (97)
T ss_pred EEEeChHHHHHHHHCcChHHhC
Confidence 9999999999999999999875
No 6
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=99.92 E-value=1.3e-24 Score=144.44 Aligned_cols=85 Identities=22% Similarity=0.470 Sum_probs=78.3
Q ss_pred HHHHhcCCcEEEEEc-----CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEE
Q 039295 38 VARVASESAVVIFSV-----SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLI 112 (139)
Q Consensus 38 ~~~~i~~~~Vvif~~-----~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~i 112 (139)
++++++.++|+||++ ++||||.+++++|++++++|+++|++.++ +++++|.+.+|..+ +|+|||||++|
T Consensus 1 ~~~~i~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~---~~~~~l~~~~g~~t---vP~vfi~g~~i 74 (90)
T cd03028 1 IKKLIKENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDE---EVRQGLKEYSNWPT---FPQLYVNGELV 74 (90)
T ss_pred ChhhhccCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCH---HHHHHHHHHhCCCC---CCEEEECCEEE
Confidence 367889999999998 59999999999999999999999998763 56679999999998 99999999999
Q ss_pred eccHHHHHHHHcCChH
Q 039295 113 GAMDRVMASHINGTLV 128 (139)
Q Consensus 113 GG~~~l~~l~~~g~L~ 128 (139)
||++++.+++++|+|+
T Consensus 75 GG~~~l~~l~~~g~L~ 90 (90)
T cd03028 75 GGCDIVKEMHESGELQ 90 (90)
T ss_pred eCHHHHHHHHHcCCcC
Confidence 9999999999999984
No 7
>PRK10638 glutaredoxin 3; Provisional
Probab=99.90 E-value=2e-23 Score=136.47 Aligned_cols=82 Identities=30% Similarity=0.532 Sum_probs=75.4
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHHc
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHIN 124 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~~ 124 (139)
.+|++|++++||+|++++.+|++++++|.+++|+.+++ .++++.+.+|..+ +|+||+||++|||++++.+++.+
T Consensus 2 ~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~---~~~~l~~~~g~~~---vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 2 ANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAA---KREEMIKRSGRTT---VPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred CcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHH---HHHHHHHHhCCCC---cCEEEECCEEEeCHHHHHHHHHc
Confidence 47999999999999999999999999999999987653 3457889999988 99999999999999999999999
Q ss_pred CChHHHHH
Q 039295 125 GTLVPLLK 132 (139)
Q Consensus 125 g~L~~~L~ 132 (139)
|+|.++|+
T Consensus 76 g~l~~~~~ 83 (83)
T PRK10638 76 GGLDPLLK 83 (83)
T ss_pred CCHHHHhC
Confidence 99999885
No 8
>PTZ00062 glutaredoxin; Provisional
Probab=99.89 E-value=5e-23 Score=155.42 Aligned_cols=95 Identities=22% Similarity=0.431 Sum_probs=88.8
Q ss_pred cHHHHHHHHhcCCcEEEEEc-----CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 33 EPMEKVARVASESAVVIFSV-----SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 33 ~~~~~~~~~i~~~~Vvif~~-----~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
++.++++++++.++|+||++ |+||||++++.+|++++++|.++||+.++ +++++|.+.+|+++ +|+|||
T Consensus 101 ~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~---~~~~~l~~~sg~~T---vPqVfI 174 (204)
T PTZ00062 101 DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDP---DLREELKVYSNWPT---YPQLYV 174 (204)
T ss_pred HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCH---HHHHHHHHHhCCCC---CCeEEE
Confidence 58899999999999999999 69999999999999999999999999765 45679999999998 999999
Q ss_pred CCEEEeccHHHHHHHHcCChHHHHHh
Q 039295 108 GGKLIGAMDRVMASHINGTLVPLLKE 133 (139)
Q Consensus 108 ~g~~iGG~~~l~~l~~~g~L~~~L~~ 133 (139)
||++|||++++.+++++|+|.++|.+
T Consensus 175 ~G~~IGG~d~l~~l~~~G~L~~~l~~ 200 (204)
T PTZ00062 175 NGELIGGHDIIKELYESNSLRKVIPD 200 (204)
T ss_pred CCEEEcChHHHHHHHHcCChhhhhhh
Confidence 99999999999999999999999975
No 9
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=99.89 E-value=4.2e-23 Score=133.32 Aligned_cols=79 Identities=33% Similarity=0.561 Sum_probs=72.5
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHHcCC
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGT 126 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~~g~ 126 (139)
|+||++++||+|.+++++|++++++|++++++.++. .++++.+.+|..+ +|+|||||+++||++++.+++++|+
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~---~~~~~~~~~g~~~---vP~i~i~g~~igg~~~~~~~~~~g~ 74 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPA---LRDEMMQRSGRRT---VPQIFIGDVHVGGCDDLYALDREGK 74 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHH---HHHHHHHHhCCCC---cCEEEECCEEEcChHHHHHHHHcCC
Confidence 689999999999999999999999999999997763 3457888889888 9999999999999999999999999
Q ss_pred hHHHH
Q 039295 127 LVPLL 131 (139)
Q Consensus 127 L~~~L 131 (139)
|.++|
T Consensus 75 l~~~l 79 (79)
T TIGR02181 75 LDPLL 79 (79)
T ss_pred hhhhC
Confidence 98875
No 10
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=99.89 E-value=1e-22 Score=131.88 Aligned_cols=82 Identities=35% Similarity=0.602 Sum_probs=77.0
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCC--CeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHHc
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVN--PTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHIN 124 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~--~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~~ 124 (139)
|++|+++|||+|.+++++|++++++ |.+++|+.+++..++++++.+.+|..+ +|+||+||+++||++++.+++++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~---vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRT---VPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCC---CCeEEECCEEEcCHHHHHHHHHc
Confidence 6899999999999999999999999 999999998877777888999999988 99999999999999999999999
Q ss_pred CChHHHH
Q 039295 125 GTLVPLL 131 (139)
Q Consensus 125 g~L~~~L 131 (139)
|+|.++|
T Consensus 78 g~l~~~~ 84 (84)
T TIGR02180 78 GKLAELL 84 (84)
T ss_pred CChhhhC
Confidence 9999875
No 11
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=99.88 E-value=4.6e-22 Score=128.53 Aligned_cols=81 Identities=46% Similarity=0.757 Sum_probs=76.6
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHHcC
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHING 125 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~~g 125 (139)
+|++|++++||+|.+++++|++++++|.+++++.+++..++++++.+.+|..+ +|+||++|+++||++++.++.++|
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~---~P~v~~~g~~igg~~~~~~~~~~g 77 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRT---VPNVFIGGKFIGGCDDLMALHKSG 77 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCC---CCeEEECCEEEcCHHHHHHHHHcC
Confidence 58999999999999999999999999999999999887777788999999988 999999999999999999999999
Q ss_pred ChHH
Q 039295 126 TLVP 129 (139)
Q Consensus 126 ~L~~ 129 (139)
+|++
T Consensus 78 ~l~~ 81 (82)
T cd03419 78 KLVK 81 (82)
T ss_pred CccC
Confidence 9975
No 12
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=99.86 E-value=2.4e-21 Score=139.57 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=75.6
Q ss_pred cEEEEEcC------CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCC----CCCCCccEEEECCEEEecc
Q 039295 46 AVVIFSVS------SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLAN----SSAVPVPIVFIGGKLIGAM 115 (139)
Q Consensus 46 ~Vvif~~~------~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~----~~~~~vP~Ifi~g~~iGG~ 115 (139)
+|+||+++ +||+|.+++.+|++++|+|.++||+.+++ ++++|.+++|. .+ +|+|||||++|||+
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~---~~~EL~~~~g~~~~~~t---vPqVFI~G~~IGG~ 74 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSG---FREELRELLGAELKAVS---LPRVFVDGRYLGGA 74 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHH---HHHHHHHHhCCCCCCCC---CCEEEECCEEEecH
Confidence 58999999 99999999999999999999999998753 45588888876 55 99999999999999
Q ss_pred HHHHHHHHcCChHHHHHhc
Q 039295 116 DRVMASHINGTLVPLLKEA 134 (139)
Q Consensus 116 ~~l~~l~~~g~L~~~L~~~ 134 (139)
+++.+++++|+|.++|+..
T Consensus 75 del~~L~e~G~L~~lL~~~ 93 (147)
T cd03031 75 EEVLRLNESGELRKLLKGI 93 (147)
T ss_pred HHHHHHHHcCCHHHHHhhc
Confidence 9999999999999999875
No 13
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=99.86 E-value=2.6e-21 Score=123.29 Aligned_cols=74 Identities=28% Similarity=0.501 Sum_probs=66.6
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCC-CCCCccEEEECCEEEeccHHHHHHHHc
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANS-SAVPVPIVFIGGKLIGAMDRVMASHIN 124 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~-~~~~vP~Ifi~g~~iGG~~~l~~l~~~ 124 (139)
+|+||++++||+|.+++.+|++++++|++++|+.++ +.++++.+.+|.. + +|+|||||+++||++++.+++++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~---~~~~~~~~~~~~~~~---vP~v~i~g~~igg~~~~~~~~~~ 74 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDP---ALREEMINRSGGRRT---VPQIFIGDVHIGGCDDLYALERK 74 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCH---HHHHHHHHHhCCCCc---cCEEEECCEEEeChHHHHHHHhC
Confidence 589999999999999999999999999999999774 3345787888877 6 99999999999999999999988
Q ss_pred C
Q 039295 125 G 125 (139)
Q Consensus 125 g 125 (139)
|
T Consensus 75 g 75 (75)
T cd03418 75 G 75 (75)
T ss_pred c
Confidence 6
No 14
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=2.9e-21 Score=126.01 Aligned_cols=78 Identities=31% Similarity=0.544 Sum_probs=69.4
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHHcC
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHING 125 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~~g 125 (139)
.|+||++++||||.++|++|++.|++|.+++++.++. .+.++.+.+..|.++ +|+|||||+++||++++.+++..|
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~~~g~~t---vP~I~i~~~~igg~~d~~~~~~~~ 77 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKRGKGQRT---VPQIFIGGKHVGGCDDLDALEAKG 77 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHHhCCCCC---cCEEEECCEEEeCcccHHHHHhhc
Confidence 6899999999999999999999999999999999874 333456777678898 999999999999999999998888
Q ss_pred Ch
Q 039295 126 TL 127 (139)
Q Consensus 126 ~L 127 (139)
.|
T Consensus 78 ~l 79 (80)
T COG0695 78 KL 79 (80)
T ss_pred cC
Confidence 76
No 15
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=8.8e-21 Score=126.75 Aligned_cols=98 Identities=26% Similarity=0.466 Sum_probs=90.4
Q ss_pred ccHHHHHHHHhcCCcEEEEEc-----CCChhHHHHHHHHhhCC-CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE
Q 039295 32 EEPMEKVARVASESAVVIFSV-----SSCCMCHAVKRLFCGMG-VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV 105 (139)
Q Consensus 32 ~~~~~~~~~~i~~~~Vvif~~-----~~Cp~C~~ak~~L~~~~-v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I 105 (139)
.+..+++++.++.++|++|.+ |.|.|+.++..+|...| ++|..+||-.++ ++++.|++.++++| +|++
T Consensus 2 ~~i~~~I~~~i~~n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~---eiR~~lk~~s~WPT---~PQL 75 (105)
T COG0278 2 MEILDRIQKQIKENPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDP---EIRQGLKEYSNWPT---FPQL 75 (105)
T ss_pred chHHHHHHHHhhcCceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCH---HHHhccHhhcCCCC---Ccee
Confidence 357789999999999999997 68999999999999999 789999988775 57779999999999 9999
Q ss_pred EECCEEEeccHHHHHHHHcCChHHHHHhcC
Q 039295 106 FIGGKLIGAMDRVMASHINGTLVPLLKEAG 135 (139)
Q Consensus 106 fi~g~~iGG~~~l~~l~~~g~L~~~L~~~g 135 (139)
||+|++|||+|-+.+++++|+|+++|++++
T Consensus 76 yi~GEfvGG~DIv~Em~q~GELq~~l~~~~ 105 (105)
T COG0278 76 YVNGEFVGGCDIVREMYQSGELQTLLKEAG 105 (105)
T ss_pred eECCEEeccHHHHHHHHHcchHHHHHHhcC
Confidence 999999999999999999999999999865
No 16
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.85 E-value=8.6e-21 Score=123.03 Aligned_cols=74 Identities=34% Similarity=0.549 Sum_probs=65.8
Q ss_pred HhcCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHH
Q 039295 41 VASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMA 120 (139)
Q Consensus 41 ~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~ 120 (139)
+.++++|+||++++||+|++++++|+++|++|++++++.+++.. ++...+|..+ +|+||+||+++||++++.+
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~----~~~~~~g~~~---vP~i~i~g~~igG~~~l~~ 76 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGR----SLRAVTGATT---VPQVFIGGKLIGGSDELEA 76 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHH----HHHHHHCCCC---cCeEEECCEEEcCHHHHHH
Confidence 45678999999999999999999999999999999998775442 5777789888 9999999999999999887
Q ss_pred H
Q 039295 121 S 121 (139)
Q Consensus 121 l 121 (139)
+
T Consensus 77 ~ 77 (79)
T TIGR02190 77 Y 77 (79)
T ss_pred H
Confidence 5
No 17
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=99.84 E-value=8.5e-21 Score=121.02 Aligned_cols=72 Identities=25% Similarity=0.388 Sum_probs=65.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
.+|+||+.++||+|++|+.+|++++++|+.+|++.+++. ++++.+++|..+ +|+||+||++|||++++.+++
T Consensus 1 ~~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~---~~el~~~~g~~~---vP~v~i~~~~iGg~~~~~~~~ 72 (73)
T cd03027 1 GRVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPER---KAELEERTGSSV---VPQIFFNEKLVGGLTDLKSLE 72 (73)
T ss_pred CEEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHH---HHHHHHHhCCCC---cCEEEECCEEEeCHHHHHhhc
Confidence 369999999999999999999999999999999987643 458999999888 999999999999999998875
No 18
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.83 E-value=4.7e-20 Score=117.20 Aligned_cols=69 Identities=30% Similarity=0.497 Sum_probs=62.5
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
+|+||++++||+|.+++.+|++++++|.+++++.++.. .++...+|..+ +|+|||||+++||++++.++
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~----~~~~~~~g~~~---vP~ifi~g~~igg~~~l~~~ 70 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITG----RSLRAVTGAMT---VPQVFIDGELIGGSDDLEKY 70 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhH----HHHHHHhCCCC---cCeEEECCEEEeCHHHHHHH
Confidence 69999999999999999999999999999999887632 36777889888 99999999999999998876
No 19
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=99.81 E-value=1.2e-19 Score=149.57 Aligned_cols=88 Identities=25% Similarity=0.385 Sum_probs=76.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHH-----HHhCCCCCCCccEEEECCEEEeccHHHH
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLM-----RLLANSSAVPVPIVFIGGKLIGAMDRVM 119 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~-----~~~g~~~~~~vP~Ifi~g~~iGG~~~l~ 119 (139)
.+|+||++++||+|+++|++|++.|++|+++||+.++...++.+++. ..+|..+ ||+|||||++|||++++.
T Consensus 2 ~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~t---vP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 2 VEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRT---VPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCCCc---cCeEEECCEEEeCchHHH
Confidence 57999999999999999999999999999999998776555433332 2357777 999999999999999998
Q ss_pred HHHHcCChHHHHHhcCcc
Q 039295 120 ASHINGTLVPLLKEAGAL 137 (139)
Q Consensus 120 ~l~~~g~L~~~L~~~g~~ 137 (139)
+ ..|+|.++|+++|++
T Consensus 79 ~--~~g~l~~~~~~~~~~ 94 (410)
T PRK12759 79 A--RAGEVIARVKGSSLT 94 (410)
T ss_pred H--HhCCHHHHhcCCccc
Confidence 7 899999999998875
No 20
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=99.81 E-value=1.6e-19 Score=118.97 Aligned_cols=73 Identities=19% Similarity=0.321 Sum_probs=60.2
Q ss_pred EEEEEcCCChhHHHHHHHHhhCC-----CCCeEEEecCCCChHHHHHHHHHHhCC--CCCCCccEEEECCEEEeccHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMG-----VNPTVYELDHDPRGADIERVLMRLLAN--SSAVPVPIVFIGGKLIGAMDRVM 119 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~-----v~~~~~~vd~~~~~~~~~~~L~~~~g~--~~~~~vP~Ifi~g~~iGG~~~l~ 119 (139)
|+||++++||||.+|+++|++++ ++|..+|++.+... ++++.+.+|. .+ +|+|||||+++||++++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~---~~~l~~~~g~~~~t---VP~ifi~g~~igG~~dl~ 75 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGIS---KADLEKTVGKPVET---VPQIFVDEKHVGGCTDFE 75 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHH---HHHHHHHhCCCCCC---cCeEEECCEEecCHHHHH
Confidence 79999999999999999999985 45777777654322 2368888886 56 999999999999999999
Q ss_pred HHHHcC
Q 039295 120 ASHING 125 (139)
Q Consensus 120 ~l~~~g 125 (139)
++++++
T Consensus 76 ~~~~~~ 81 (86)
T TIGR02183 76 QLVKEN 81 (86)
T ss_pred HHHHhc
Confidence 987764
No 21
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=99.80 E-value=2.3e-19 Score=117.57 Aligned_cols=73 Identities=22% Similarity=0.291 Sum_probs=62.8
Q ss_pred cEEEEEcCCChhHHHHHHHHhh-----CCCCCeEEEecCCCChHHHHHHHHHHhCC--CCCCCccEEEECCEEEeccHHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCG-----MGVNPTVYELDHDPRGADIERVLMRLLAN--SSAVPVPIVFIGGKLIGAMDRV 118 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~-----~~v~~~~~~vd~~~~~~~~~~~L~~~~g~--~~~~~vP~Ifi~g~~iGG~~~l 118 (139)
+|+||++++||+|++|+++|++ .+++|.++|++.+.... +++.+.+|. .+ +|+|||||+++||++++
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~---~el~~~~~~~~~~---vP~ifi~g~~igg~~~~ 75 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISK---ADLEKTVGKPVET---VPQIFVDQKHIGGCTDF 75 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHH---HHHHHHHCCCCCc---CCEEEECCEEEcCHHHH
Confidence 6999999999999999999999 78999999998765332 367777775 56 99999999999999999
Q ss_pred HHHHHc
Q 039295 119 MASHIN 124 (139)
Q Consensus 119 ~~l~~~ 124 (139)
.++.+.
T Consensus 76 ~~~~~~ 81 (85)
T PRK11200 76 EAYVKE 81 (85)
T ss_pred HHHHHH
Confidence 888654
No 22
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=99.77 E-value=2.8e-18 Score=106.81 Aligned_cols=71 Identities=34% Similarity=0.587 Sum_probs=64.4
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
+|++|++++||+|++++.+|++++++|.++|++.+++ .++++.+.+|..+ +|++|+||+++||++++.+++
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~---~~~~l~~~~~~~~---~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGE---LREELKELSGWPT---VPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHH---HHHHHHHHhCCCC---cCEEEECCEEEecHHHHHHhh
Confidence 5899999999999999999999999999999987764 4458888999888 999999999999999998875
No 23
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=99.73 E-value=1.2e-17 Score=102.63 Aligned_cols=60 Identities=30% Similarity=0.550 Sum_probs=55.2
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLI 112 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~i 112 (139)
|++|++++||+|.+++++|++.|++|+++||+.++ +.++++.+.+|..+ +|+|||||++|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~---~~~~~l~~~~g~~~---~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE---EAREELKELSGVRT---VPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH---HHHHHHHHHHSSSS---SSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch---hHHHHHHHHcCCCc---cCEEEECCEEC
Confidence 78999999999999999999999999999999987 34468999889888 99999999986
No 24
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=99.71 E-value=4e-17 Score=109.08 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=69.4
Q ss_pred EEEEEcCC------ChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCC----CCCCCccEEEECCEEEeccH
Q 039295 47 VVIFSVSS------CCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLAN----SSAVPVPIVFIGGKLIGAMD 116 (139)
Q Consensus 47 Vvif~~~~------Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~----~~~~~vP~Ifi~g~~iGG~~ 116 (139)
|+||+++- =-.|.+++.+|+.++|+|+++||+.+++.+ +++.+.+|. .+ +|+|||||++|||++
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r---~em~~~~~~~~g~~t---vPQIFi~~~~iGg~d 75 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENR---QWMRENVPNENGKPL---PPQIFNGDEYCGDYE 75 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHH---HHHHHhcCCCCCCCC---CCEEEECCEEeeCHH
Confidence 67887763 457889999999999999999999877544 488888764 56 999999999999999
Q ss_pred HHHHHHHcCChHHHHH
Q 039295 117 RVMASHINGTLVPLLK 132 (139)
Q Consensus 117 ~l~~l~~~g~L~~~L~ 132 (139)
++.+++++|+|.++|+
T Consensus 76 dl~~l~e~g~L~~lLk 91 (92)
T cd03030 76 AFFEAKENNTLEEFLK 91 (92)
T ss_pred HHHHHHhCCCHHHHhC
Confidence 9999999999999986
No 25
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=7.2e-17 Score=122.04 Aligned_cols=94 Identities=22% Similarity=0.437 Sum_probs=87.1
Q ss_pred HHHHHHHhcCCcEEEEEc-----CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECC
Q 039295 35 MEKVARVASESAVVIFSV-----SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGG 109 (139)
Q Consensus 35 ~~~~~~~i~~~~Vvif~~-----~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g 109 (139)
...+.++++.++|++|.+ |.|.+.+.+..+|++++++|..+||-.++ ++|+.+++.+.++| +||+||+|
T Consensus 129 ~~~l~~lv~a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~De---elRqglK~fSdWPT---fPQlyI~G 202 (227)
T KOG0911|consen 129 DNRLEKLVKAKPVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDE---ELRQGLKEFSDWPT---FPQLYVKG 202 (227)
T ss_pred HHHHHHhcccCeEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCH---HHHHHhhhhcCCCC---ccceeECC
Confidence 348899999999999998 57999999999999999999999999887 46779999999999 99999999
Q ss_pred EEEeccHHHHHHHHcCChHHHHHhc
Q 039295 110 KLIGAMDRVMASHINGTLVPLLKEA 134 (139)
Q Consensus 110 ~~iGG~~~l~~l~~~g~L~~~L~~~ 134 (139)
+++||+|-+..++++|+|...|+++
T Consensus 203 EFiGGlDIl~~m~~~geL~~~l~~~ 227 (227)
T KOG0911|consen 203 EFIGGLDILKEMHEKGELVYTLKEA 227 (227)
T ss_pred EeccCcHHHHHHhhcccHHHHhhcC
Confidence 9999999999999999999999864
No 26
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=99.66 E-value=2.5e-16 Score=100.11 Aligned_cols=64 Identities=16% Similarity=0.380 Sum_probs=55.1
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCE-EEeccHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGK-LIGAMDR 117 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~-~iGG~~~ 117 (139)
|+||++++||+|++++++|++++++|+++||+.++... +.+.. .|..+ +|+||++|+ .+|||+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~---~~~~~-~g~~~---vP~v~~~g~~~~~G~~~ 65 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAI---DYVKA-QGFRQ---VPVIVADGDLSWSGFRP 65 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHH---HHHHH-cCCcc---cCEEEECCCcEEeccCH
Confidence 68999999999999999999999999999999876443 35654 48877 999999775 9999985
No 27
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.65 E-value=7.8e-16 Score=100.50 Aligned_cols=65 Identities=23% Similarity=0.436 Sum_probs=57.0
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDR 117 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~ 117 (139)
+|+||++++||+|++++.+|++.|++|+++|++.+++.. +.+.. .|..+ +|+|++++..++||+.
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~---~~~~~-~g~~~---vPvv~i~~~~~~Gf~~ 66 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAA---ETLRA-QGFRQ---LPVVIAGDLSWSGFRP 66 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHH---HHHHH-cCCCC---cCEEEECCEEEecCCH
Confidence 699999999999999999999999999999999876443 24544 58777 9999999999999985
No 28
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=99.53 E-value=4.1e-14 Score=88.35 Aligned_cols=66 Identities=21% Similarity=0.492 Sum_probs=57.2
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDR 117 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~ 117 (139)
+|++|+.+|||+|++++.+|++.+++|..+|++.++... +++.+.+|..+ +|+++++|+.++|++.
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~---~~~~~~~~~~~---vP~~~~~~~~~~g~~~ 66 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAR---EEVLKVLGQRG---VPVIVIGHKIIVGFDP 66 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHH---HHHHHHhCCCc---ccEEEECCEEEeeCCH
Confidence 489999999999999999999999999999998765322 46777889888 9999999999999864
No 29
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.3e-13 Score=107.08 Aligned_cols=98 Identities=28% Similarity=0.448 Sum_probs=81.9
Q ss_pred HHHHHHHHhc---CCcEEEEEcC------CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCC-CCCCcc
Q 039295 34 PMEKVARVAS---ESAVVIFSVS------SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANS-SAVPVP 103 (139)
Q Consensus 34 ~~~~~~~~i~---~~~Vvif~~~------~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~-~~~~vP 103 (139)
....+++... .+.||||+++ +--.|..++.+|+.++|.|.++||..+.. ++++|+++.|.. .++++|
T Consensus 117 ~~~e~~~~~~Pgge~~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~---fr~EL~~~lg~~~~~~~LP 193 (281)
T KOG2824|consen 117 LLLEFKEVCPPGGEDRVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSE---FREELQELLGEDEKAVSLP 193 (281)
T ss_pred chhhhhhcCCCCCCceEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHH---HHHHHHHHHhcccccCccC
Confidence 3444455444 3479999986 68899999999999999999999999875 445888888872 245799
Q ss_pred EEEECCEEEeccHHHHHHHHcCChHHHHHhc
Q 039295 104 IVFIGGKLIGAMDRVMASHINGTLVPLLKEA 134 (139)
Q Consensus 104 ~Ifi~g~~iGG~~~l~~l~~~g~L~~~L~~~ 134 (139)
+|||+|++|||.+++..|++.|+|.++|++.
T Consensus 194 rVFV~GryIGgaeeV~~LnE~GkL~~lL~~~ 224 (281)
T KOG2824|consen 194 RVFVKGRYIGGAEEVVRLNEEGKLGKLLKGI 224 (281)
T ss_pred eEEEccEEeccHHHhhhhhhcchHHHHHhcC
Confidence 9999999999999999999999999999874
No 30
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=99.46 E-value=4.4e-13 Score=83.54 Aligned_cols=66 Identities=27% Similarity=0.503 Sum_probs=56.9
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDR 117 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~ 117 (139)
+|++|+.++||+|.+++.+|++.+++|..++++.++. ..+++.+.++... +|+|+++|+.++|++.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~---~~~~~~~~~~~~~---vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPE---ALEELKKLNGYRS---VPVVVIGDEHLSGFRP 66 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHH---HHHHHHHHcCCcc---cCEEEECCEEEecCCH
Confidence 4899999999999999999999999999999987543 2346777777777 9999999999999885
No 31
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.40 E-value=6.9e-13 Score=82.54 Aligned_cols=58 Identities=19% Similarity=0.308 Sum_probs=48.4
Q ss_pred cEEEEEcCCChhHHHHHHHHhhC-----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEe
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGM-----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIG 113 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~-----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iG 113 (139)
+|++|+++|||+|..++++|+++ ++++..+|++.++ ++.+.+|..+ +|++++||++++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~-------~l~~~~~i~~---vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFP-------DLADEYGVMS---VPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCH-------hHHHHcCCcc---cCEEEECCEEEE
Confidence 58999999999999999999876 4667777776553 4777889888 999999999875
No 32
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=99.37 E-value=2.9e-12 Score=81.14 Aligned_cols=65 Identities=17% Similarity=0.374 Sum_probs=52.7
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHh-CCCCCCCccEEEE-CCEEEeccH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLL-ANSSAVPVPIVFI-GGKLIGAMD 116 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~-g~~~~~~vP~Ifi-~g~~iGG~~ 116 (139)
+|++|+++|||+|++++.+|++++++|..+|++.++... +.+.... |..+ +|+|++ ||+.+....
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~---~~~~~~~~~~~~---vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAA---DRVVSVNNGNMT---VPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHH---HHHHHHhCCCce---eCEEEECCCeEecCCC
Confidence 489999999999999999999999999999998776433 3566665 7777 999976 567765544
No 33
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=99.18 E-value=1.6e-10 Score=78.14 Aligned_cols=82 Identities=15% Similarity=0.187 Sum_probs=60.3
Q ss_pred cEEEEEcCCCh------hHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhC--------CCCCCCccEEEECCEE
Q 039295 46 AVVIFSVSSCC------MCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLA--------NSSAVPVPIVFIGGKL 111 (139)
Q Consensus 46 ~Vvif~~~~Cp------~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g--------~~~~~~vP~Ifi~g~~ 111 (139)
.|.||+++.-. .|.++..+|+.++|+|+.+||..+++.+ +.+.+..| ... -.|+||.|+++
T Consensus 2 ~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r---~~mr~~~g~~~~~~~~~~~--lpPqiF~~~~Y 76 (99)
T PF04908_consen 2 VIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEAR---QWMRENAGPEEKDPGNGKP--LPPQIFNGDEY 76 (99)
T ss_dssp SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHH---HHHHHHT--CCCS-TSTT----S-EEEETTEE
T ss_pred EEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHH---HHHHHhccccccCCCCCCC--CCCEEEeCCEE
Confidence 47788876544 4568999999999999999999976554 46777764 222 25899999999
Q ss_pred EeccHHHHHHHHcCChHHHHH
Q 039295 112 IGAMDRVMASHINGTLVPLLK 132 (139)
Q Consensus 112 iGG~~~l~~l~~~g~L~~~L~ 132 (139)
+|+++++.++.++++|.+.|+
T Consensus 77 ~Gdye~f~ea~E~~~L~~fL~ 97 (99)
T PF04908_consen 77 CGDYEDFEEANENGELEEFLK 97 (99)
T ss_dssp EEEHHHHHHHHCTT-HHHHHT
T ss_pred EeeHHHHHHHHhhCHHHHHhC
Confidence 999999999999999999986
No 34
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.14 E-value=1.8e-10 Score=76.39 Aligned_cols=70 Identities=20% Similarity=0.293 Sum_probs=57.0
Q ss_pred HHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhC-----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC
Q 039295 34 PMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGM-----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG 108 (139)
Q Consensus 34 ~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~-----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~ 108 (139)
..+.++++-++-.|.+|+.++||+|..+..+++++ ++++..+|++..+ ++.+.+|..+ +|++++|
T Consensus 3 ~~~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~-------e~a~~~~V~~---vPt~vid 72 (89)
T cd03026 3 LLEQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQ-------DEVEERGIMS---VPAIFLN 72 (89)
T ss_pred HHHHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCH-------HHHHHcCCcc---CCEEEEC
Confidence 56777766666689999999999999999998765 4677777777664 5777889998 9999999
Q ss_pred CEEEe
Q 039295 109 GKLIG 113 (139)
Q Consensus 109 g~~iG 113 (139)
|+.++
T Consensus 73 G~~~~ 77 (89)
T cd03026 73 GELFG 77 (89)
T ss_pred CEEEE
Confidence 98765
No 35
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.09 E-value=9e-10 Score=67.03 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=57.9
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
++|+.++||+|.+++.+|+..+++|+.++++....... ++.+.++... +|+++++|..+++...+..+
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~---~~~~~~~~~~---~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQE---EFLALNPLGK---VPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCH---HHHhcCCCCC---CCEEEECCEEEEcHHHHHHH
Confidence 68999999999999999999999999999987654332 4666777777 99999999999998877654
No 36
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.07 E-value=1.3e-09 Score=69.84 Aligned_cols=71 Identities=8% Similarity=0.198 Sum_probs=57.0
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE--CCEEEeccHHHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI--GGKLIGAMDRVMASHI 123 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi--~g~~iGG~~~l~~l~~ 123 (139)
+++|+.+.||+|.+++.+|+++|++|+.++++..... .+++.+..+... +|++.. +|..+.+...+..+.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~---~~~~~~~~p~~~---vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPK---RDKFLEKGGKVQ---VPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHH---HHHHHHhCCCCc---ccEEEeCCCCeEEEcHHHHHHHHH
Confidence 6899999999999999999999999999998754322 236777777777 999977 3678888888777643
No 37
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.98 E-value=4.4e-09 Score=67.17 Aligned_cols=62 Identities=21% Similarity=0.266 Sum_probs=44.9
Q ss_pred cEEEEEcCCChhHHHHHHHHhh----CCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCE-EEecc
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCG----MGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGK-LIGAM 115 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~----~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~-~iGG~ 115 (139)
.|++|+++|||+|+.+++.|++ ++..+....||.+.+. ++.+.+|..+ +|+++++|+ .+.|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~---vPt~~~~g~~~~~G~ 68 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENP-----QKAMEYGIMA---VPAIVINGDVEFIGA 68 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCH-----HHHHHcCCcc---CCEEEECCEEEEecC
Confidence 5889999999999999999875 3443455555544332 3556688888 999999997 33343
No 38
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=98.98 E-value=3.9e-09 Score=66.20 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=55.1
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC-CEEEeccHHHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG-GKLIGAMDRVMASHI 123 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~-g~~iGG~~~l~~l~~ 123 (139)
++|+.++||+|.+++-+|...|++|+.+.++..+.. ...+..+... +|+++++ |..+++...+.++.+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~~~-----~~~~~~~~~~---vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDDEA-----TPIRMIGAKQ---VPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCchH-----HHHHhcCCCc---cCEEEeCCCeEeehHHHHHHHHh
Confidence 589999999999999999999999999988754322 2234556666 9999997 899999999887643
No 39
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=98.96 E-value=5.1e-09 Score=66.61 Aligned_cols=68 Identities=15% Similarity=0.353 Sum_probs=54.7
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC----CEEEeccHHHHHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG----GKLIGAMDRVMAS 121 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~----g~~iGG~~~l~~l 121 (139)
++++|+.+.||+|++++.+|.+.|++|++++++... . ..+ +..+... +|+++++ |..+.....+..+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~--~---~~~-~~~~~~~---vP~l~~~~~~~~~~l~eS~~I~~y 71 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS--R---KEI-KWSSYKK---VPILRVESGGDGQQLVDSSVIIST 71 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh--H---HHH-HHhCCCc---cCEEEECCCCCccEEEcHHHHHHH
Confidence 589999999999999999999999999999886432 1 134 3467667 9999987 7888888887776
Q ss_pred H
Q 039295 122 H 122 (139)
Q Consensus 122 ~ 122 (139)
.
T Consensus 72 L 72 (77)
T cd03040 72 L 72 (77)
T ss_pred H
Confidence 3
No 40
>PHA02125 thioredoxin-like protein
Probab=98.89 E-value=8e-09 Score=65.93 Aligned_cols=55 Identities=20% Similarity=0.348 Sum_probs=44.1
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLI 112 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~i 112 (139)
|++|+.+||++|+.++++|++. .+.+++||.++.. ++.+.++... +|++. +|+.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~--~~~~~~vd~~~~~-----~l~~~~~v~~---~PT~~-~g~~~ 56 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV--EYTYVDVDTDEGV-----ELTAKHHIRS---LPTLV-NTSTL 56 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH--hheEEeeeCCCCH-----HHHHHcCCce---eCeEE-CCEEE
Confidence 8899999999999999999864 5667777765532 5788889888 99987 77644
No 41
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=98.89 E-value=2e-08 Score=63.02 Aligned_cols=67 Identities=15% Similarity=0.336 Sum_probs=55.4
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC-CEEEeccHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG-GKLIGAMDRVMAS 121 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~-g~~iGG~~~l~~l 121 (139)
++|+.++||+|.+++.+|++.|++|+.++++..... +.+.+.++... +|++..+ |..+.....+..+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~----~~~~~~np~~~---vP~L~~~~g~~l~eS~aI~~y 69 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKP----AEMLAASPKGT---VPVLVLGNGTVIEESLDIMRW 69 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCC----HHHHHHCCCCC---CCEEEECCCcEEecHHHHHHh
Confidence 689999999999999999999999999999875432 25777777777 9999996 8888777666554
No 42
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=98.87 E-value=4.5e-08 Score=64.38 Aligned_cols=69 Identities=12% Similarity=0.221 Sum_probs=57.4
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC-CEEEeccHHHHHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG-GKLIGAMDRVMAS 121 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~-g~~iGG~~~l~~l 121 (139)
.+++|+.+.||+|.+++.+|...|++|+.++++..... +.+.+.++... +|++.++ |..+.....+..+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~----~~~~~~np~~~---vPvL~~~~g~~l~eS~aI~~y 87 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKP----DWFLEKNPQGK---VPALEIDEGKVVYESLIICEY 87 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCc----HHHHhhCCCCC---cCEEEECCCCEEECHHHHHHh
Confidence 59999999999999999999999999999988864322 24667777777 9999998 8888887776654
No 43
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.86 E-value=2.8e-08 Score=62.22 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=56.4
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
+++|+.+.||+|.+++.+|+..|++|+.++++..... +++.+...... +|++..+|..+.....+..+.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~~---vP~l~~~~~~l~es~aI~~yL 69 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPP----EDLAELNPYGT---VPTLVDRDLVLYESRIIMEYL 69 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCC----HHHHhhCCCCC---CCEEEECCEEEEcHHHHHHHH
Confidence 4789999999999999999999999999988865332 25666666666 999999998888877776664
No 44
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=98.85 E-value=7e-09 Score=70.25 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=38.6
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhC
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLA 95 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g 95 (139)
|+||+.++||+|++++++|++.|++|+++|+..++...+ +|.++.+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~---~l~~~~~ 46 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKE---ELKELLA 46 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHH---HHHHHHH
Confidence 589999999999999999999999999999988766554 4444443
No 45
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=98.85 E-value=4.5e-09 Score=72.22 Aligned_cols=39 Identities=18% Similarity=0.485 Sum_probs=35.8
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGAD 85 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~ 85 (139)
|+||+.++||+|++|+++|++.|++|+++|+..++...+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~ 39 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVEEPPSKE 39 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccCCcccHH
Confidence 589999999999999999999999999999998876554
No 46
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.80 E-value=2.4e-08 Score=63.99 Aligned_cols=54 Identities=17% Similarity=0.404 Sum_probs=41.3
Q ss_pred EEEEEcCCChhHHHH----HHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEE
Q 039295 47 VVIFSVSSCCMCHAV----KRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLI 112 (139)
Q Consensus 47 Vvif~~~~Cp~C~~a----k~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~i 112 (139)
|.+|+ +|||+|+.+ +.++++++.++.+++|+..+ + ...+|..+ +|++++||+.+
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~-------~-a~~~~v~~---vPti~i~G~~~ 60 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTDMN-------E-ILEAGVTA---TPGVAVDGELV 60 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHH-------H-HHHcCCCc---CCEEEECCEEE
Confidence 56666 999999999 55667788888999888321 2 33468888 99999999755
No 47
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.77 E-value=2.3e-08 Score=68.67 Aligned_cols=59 Identities=20% Similarity=0.436 Sum_probs=42.5
Q ss_pred HHHhcCCcEEEE-EcCCChhHHHHHHHHhhCC-----CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 39 ARVASESAVVIF-SVSSCCMCHAVKRLFCGMG-----VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 39 ~~~i~~~~Vvif-~~~~Cp~C~~ak~~L~~~~-----v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
+++.+..++++| +++|||+|+.++++|+++. +.+..+|+|..+ ++.+.+|..+ +|++++
T Consensus 17 ~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~-------~l~~~~~v~~---vPt~~i 81 (113)
T cd02975 17 KEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDK-------EKAEKYGVER---VPTTIF 81 (113)
T ss_pred HHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCH-------HHHHHcCCCc---CCEEEE
Confidence 334455556665 7899999999999998754 334555555432 6888899998 999977
No 48
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=98.75 E-value=4.3e-08 Score=61.14 Aligned_cols=71 Identities=10% Similarity=0.179 Sum_probs=54.2
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE-CCEEEeccHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI-GGKLIGAMDRVMAS 121 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi-~g~~iGG~~~l~~l 121 (139)
+++|+.++||+|.+++-+|...+++|+.+.++...... ..+.+.+..+... +|++.+ ||..+.....+..+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~-~~~~~~~~~p~~~---vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQ-RSPEFLAKNPAGT---VPVLELDDGTVITESVAICRY 72 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCcc-CCHHHHhhCCCCC---CCEEEeCCCCEEecHHHHHHH
Confidence 37899999999999999999999999998887643210 1135777777777 999987 66777776666554
No 49
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=98.72 E-value=9.1e-08 Score=62.07 Aligned_cols=53 Identities=19% Similarity=0.555 Sum_probs=40.8
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCC----CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECC
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMG----VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGG 109 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~----v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g 109 (139)
+|++|++++|+.|..|+..|.... +.+..+||+.++ ++.+.+|.. +|++.++|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~-------~l~~~Y~~~----IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDP-------ELFEKYGYR----IPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTH-------HHHHHSCTS----TSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCH-------HHHHHhcCC----CCEEEEcC
Confidence 589999999999999999999754 334555665332 588899974 89999999
No 50
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=98.71 E-value=1.5e-07 Score=59.02 Aligned_cols=71 Identities=13% Similarity=0.228 Sum_probs=56.3
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
+++|+.+.||+|++++.+|...|++|+.+.++..... ...+++.+.+.... +|++..+|..+.....+..+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~-~~~~~~~~~~p~~~---vP~l~~~~~~l~es~aI~~y 71 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGE-HLKPEFLKLNPQHT---VPTLVDNGFVLWESHAILIY 71 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCC-cCCHHHHhhCcCCC---CCEEEECCEEEEcHHHHHHH
Confidence 4789999999999999999999999999988854321 11236777777777 99999999888777776655
No 51
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=98.68 E-value=7.1e-08 Score=68.17 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=34.9
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGA 84 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~ 84 (139)
|+||+.++||+|++|+++|++.|++|+++|+..++...
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~ 39 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTI 39 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeeccCChhhH
Confidence 78999999999999999999999999999998776543
No 52
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.65 E-value=1.7e-07 Score=65.38 Aligned_cols=78 Identities=9% Similarity=0.197 Sum_probs=49.1
Q ss_pred HHHHHhcCC-c-EEEEEcCCChhHHHHHHHHhh----CCCCCeEEEecCCCC-----hHHHHHHHHHHhCCCC-CCCccE
Q 039295 37 KVARVASES-A-VVIFSVSSCCMCHAVKRLFCG----MGVNPTVYELDHDPR-----GADIERVLMRLLANSS-AVPVPI 104 (139)
Q Consensus 37 ~~~~~i~~~-~-Vvif~~~~Cp~C~~ak~~L~~----~~v~~~~~~vd~~~~-----~~~~~~~L~~~~g~~~-~~~vP~ 104 (139)
.+.+.++.+ . |+.|+++|||+|+.+.+.|++ .++++-.+|+|.+.. ..++ .++.+.++... ..++|+
T Consensus 15 ~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~~~~~~~~~~~~~-~~~~~~~~i~~~i~~~PT 93 (122)
T TIGR01295 15 RALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSENNGSFEMSSLNDL-TAFRSRFGIPTSFMGTPT 93 (122)
T ss_pred HHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCCccCcCcccHHHH-HHHHHHcCCcccCCCCCE
Confidence 345555544 3 777999999999998888765 356777888885431 1122 23444443221 223998
Q ss_pred E--EECCEEEecc
Q 039295 105 V--FIGGKLIGAM 115 (139)
Q Consensus 105 I--fi~g~~iGG~ 115 (139)
+ |-+|+.++..
T Consensus 94 ~v~~k~Gk~v~~~ 106 (122)
T TIGR01295 94 FVHITDGKQVSVR 106 (122)
T ss_pred EEEEeCCeEEEEE
Confidence 8 6799877654
No 53
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=98.64 E-value=2e-07 Score=59.18 Aligned_cols=68 Identities=10% Similarity=0.241 Sum_probs=58.7
Q ss_pred EEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHH
Q 039295 49 IFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 49 if~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~ 123 (139)
+|+.++||+|.+++-+|+..|++|+.++++..... +.+.+..+... +|++..||..+.+...+..+.+
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~----~~~~~~~p~~~---vPvL~~~g~~l~dS~~I~~yL~ 68 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKR----PEFLKLNPKGK---VPVLVDDGEVLTDSAAIIEYLE 68 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTS----HHHHHHSTTSB---SSEEEETTEEEESHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccch----hHHHhhccccc---ceEEEECCEEEeCHHHHHHHHH
Confidence 68999999999999999999999999999866432 36788888888 9999999999999998877643
No 54
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=98.62 E-value=8.6e-08 Score=66.26 Aligned_cols=49 Identities=14% Similarity=0.378 Sum_probs=39.9
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhC
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLA 95 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g 95 (139)
|+||+.++||+|++|+++|++.|++|.++|+...+...+-...+.+.+|
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~ 49 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLE 49 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcC
Confidence 5799999999999999999999999999999887765543334444445
No 55
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.62 E-value=1.1e-07 Score=80.62 Aligned_cols=81 Identities=17% Similarity=0.206 Sum_probs=63.0
Q ss_pred CCCCCCCCCccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCC-----CCCeEEEecCCCChHHHHHHHHHHhCCC
Q 039295 23 SRSGGNMPREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMG-----VNPTVYELDHDPRGADIERVLMRLLANS 97 (139)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~-----v~~~~~~vd~~~~~~~~~~~L~~~~g~~ 97 (139)
.|.+.+..+++..+.++.+-++..|.+|.+++||||..+...+.++. |..+.+|....+ ++.+.++..
T Consensus 96 ~~~~~~~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~-------~~~~~~~v~ 168 (517)
T PRK15317 96 VGGHPPKLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQ-------DEVEARNIM 168 (517)
T ss_pred hcCCCCCCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCH-------hHHHhcCCc
Confidence 34455667888999999888888899999999999999999987654 334445444443 577788988
Q ss_pred CCCCccEEEECCEEEe
Q 039295 98 SAVPVPIVFIGGKLIG 113 (139)
Q Consensus 98 ~~~~vP~Ifi~g~~iG 113 (139)
+ ||++|+||+.+.
T Consensus 169 ~---VP~~~i~~~~~~ 181 (517)
T PRK15317 169 A---VPTVFLNGEEFG 181 (517)
T ss_pred c---cCEEEECCcEEE
Confidence 8 999999997653
No 56
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.62 E-value=4.2e-07 Score=56.60 Aligned_cols=71 Identities=15% Similarity=0.292 Sum_probs=55.5
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
+++|+.+.||+|.+++-+|...|++|+.++++..... ...+.+.+...... +|++..+|..+.....+..+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~-~~~~~~~~~~p~~~---vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGE-TRTPEFLALNPNGE---VPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcc-cCCHHHHHhCCCCC---CCEEEECCEEEEcHHHHHHH
Confidence 3789999999999999999999999999998753211 11135666666667 99999999988877766554
No 57
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.60 E-value=1.7e-07 Score=70.96 Aligned_cols=71 Identities=17% Similarity=0.272 Sum_probs=49.9
Q ss_pred CCccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCC-----CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccE
Q 039295 30 PREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMG-----VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPI 104 (139)
Q Consensus 30 ~~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~-----v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~ 104 (139)
.+.+..+.++..-+.-.|++|+.+|||+|..++.+++++. +.+..+|++..+ ++...+|..+ +|+
T Consensus 120 L~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~-------~~~~~~~V~~---vPt 189 (215)
T TIGR02187 120 LSEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENP-------DLAEKYGVMS---VPK 189 (215)
T ss_pred CCHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCH-------HHHHHhCCcc---CCE
Confidence 3455566666644444677799999999999999988653 333444444332 5777889988 999
Q ss_pred EEECCE
Q 039295 105 VFIGGK 110 (139)
Q Consensus 105 Ifi~g~ 110 (139)
++++++
T Consensus 190 l~i~~~ 195 (215)
T TIGR02187 190 IVINKG 195 (215)
T ss_pred EEEecC
Confidence 988754
No 58
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.58 E-value=7.1e-08 Score=81.67 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=62.8
Q ss_pred CCCCCCCCCccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCC-----CCeEEEecCCCChHHHHHHHHHHhCCC
Q 039295 23 SRSGGNMPREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGV-----NPTVYELDHDPRGADIERVLMRLLANS 97 (139)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v-----~~~~~~vd~~~~~~~~~~~L~~~~g~~ 97 (139)
.|.+.+..+++..+.++.+-++..|.+|.++.||||..+...+.++.+ ..+.+|....+ ++.+.++..
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~-------~~~~~~~v~ 169 (515)
T TIGR03140 97 VGGHGPKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQ-------DEVEALGIQ 169 (515)
T ss_pred hcCCCCCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCH-------HHHHhcCCc
Confidence 344566678889999998877888999999999999999999877643 33443333333 577888888
Q ss_pred CCCCccEEEECCEEEec
Q 039295 98 SAVPVPIVFIGGKLIGA 114 (139)
Q Consensus 98 ~~~~vP~Ifi~g~~iGG 114 (139)
+ ||++||||+.+..
T Consensus 170 ~---VP~~~i~~~~~~~ 183 (515)
T TIGR03140 170 G---VPAVFLNGEEFHN 183 (515)
T ss_pred c---cCEEEECCcEEEe
Confidence 8 9999999986643
No 59
>PHA02278 thioredoxin-like protein
Probab=98.57 E-value=7.1e-07 Score=60.57 Aligned_cols=70 Identities=17% Similarity=0.347 Sum_probs=47.2
Q ss_pred HHHHHhc-CCcE-EEEEcCCChhHHHHHHHHhhCC------CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--E
Q 039295 37 KVARVAS-ESAV-VIFSVSSCCMCHAVKRLFCGMG------VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--F 106 (139)
Q Consensus 37 ~~~~~i~-~~~V-vif~~~~Cp~C~~ak~~L~~~~------v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--f 106 (139)
.+++.+. ...| +-|+++||+.|+...+.|+++. +++..+|+|.++... ..+.+.++..+ +|++ |
T Consensus 6 ~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~---~~l~~~~~I~~---iPT~i~f 79 (103)
T PHA02278 6 DLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDR---EKAVKLFDIMS---TPVLIGY 79 (103)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCcccccc---HHHHHHCCCcc---ccEEEEE
Confidence 3444444 3444 4489999999999998886641 345566666543211 25888889888 9988 6
Q ss_pred ECCEEE
Q 039295 107 IGGKLI 112 (139)
Q Consensus 107 i~g~~i 112 (139)
-||+.+
T Consensus 80 k~G~~v 85 (103)
T PHA02278 80 KDGQLV 85 (103)
T ss_pred ECCEEE
Confidence 688866
No 60
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.55 E-value=2e-07 Score=79.63 Aligned_cols=79 Identities=22% Similarity=0.284 Sum_probs=64.2
Q ss_pred CCCCCCCCCccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhh----C-CCCCeEEEecCCCChHHHHHHHHHHhCCC
Q 039295 23 SRSGGNMPREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCG----M-GVNPTVYELDHDPRGADIERVLMRLLANS 97 (139)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~----~-~v~~~~~~vd~~~~~~~~~~~L~~~~g~~ 97 (139)
.|.+.+..+++..+.++.+-++..|.+|..++||||..+...+++ . ++..+.+|+...+ ++.+.++..
T Consensus 456 ~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~-------~~~~~~~v~ 528 (555)
T TIGR03143 456 AAGPGQPLGEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFP-------DLKDEYGIM 528 (555)
T ss_pred hcCCCCCCCHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccH-------HHHHhCCce
Confidence 455566778889999988877778999999999999988776654 3 5778888887775 578788998
Q ss_pred CCCCccEEEECCEE
Q 039295 98 SAVPVPIVFIGGKL 111 (139)
Q Consensus 98 ~~~~vP~Ifi~g~~ 111 (139)
+ +|.++|||+.
T Consensus 529 ~---vP~~~i~~~~ 539 (555)
T TIGR03143 529 S---VPAIVVDDQQ 539 (555)
T ss_pred e---cCEEEECCEE
Confidence 8 9999999964
No 61
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=98.54 E-value=3.2e-07 Score=63.24 Aligned_cols=38 Identities=16% Similarity=0.306 Sum_probs=34.6
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGA 84 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~ 84 (139)
|+||+.++|++|++|+++|++.|++|+++|+..++...
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~ 39 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTK 39 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecCCCcchH
Confidence 78999999999999999999999999999998765443
No 62
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=98.54 E-value=2.8e-07 Score=65.32 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=34.6
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGA 84 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~ 84 (139)
|+||+.++|+.|++|+++|++.|++|+++|+..++-..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~ 39 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTK 39 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCH
Confidence 78999999999999999999999999999998765443
No 63
>PRK12559 transcriptional regulator Spx; Provisional
Probab=98.53 E-value=3.3e-07 Score=64.83 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=34.6
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGA 84 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~ 84 (139)
|+||+.++|+.|++|+++|++.|++|.++|+..++...
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~ 39 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVSNSMTV 39 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCH
Confidence 78999999999999999999999999999998765443
No 64
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=98.51 E-value=3.3e-07 Score=62.42 Aligned_cols=38 Identities=16% Similarity=0.347 Sum_probs=34.5
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGA 84 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~ 84 (139)
|+||+.++|+.|++|+++|++.|++|+++|+..++-..
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~ 38 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDA 38 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCH
Confidence 58999999999999999999999999999998876444
No 65
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.9e-07 Score=67.25 Aligned_cols=75 Identities=21% Similarity=0.303 Sum_probs=53.0
Q ss_pred CCccHHHHHHHHhcCC-cEE-EEEcCCChhHHHHHHHHhhCCCC----CeEEEecCCCChHHHHHHHHHHhCCCCCCCcc
Q 039295 30 PREEPMEKVARVASES-AVV-IFSVSSCCMCHAVKRLFCGMGVN----PTVYELDHDPRGADIERVLMRLLANSSAVPVP 103 (139)
Q Consensus 30 ~~~~~~~~~~~~i~~~-~Vv-if~~~~Cp~C~~ak~~L~~~~v~----~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP 103 (139)
...+..++-..+++.. +|+ .|+++||..|+.+.+.|+++--+ +....||.++.. +|...++... +|
T Consensus 46 ~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~-----ela~~Y~I~a---vP 117 (150)
T KOG0910|consen 46 NVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHP-----ELAEDYEISA---VP 117 (150)
T ss_pred cccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccccc-----chHhhcceee---ee
Confidence 3455666666666554 544 49999999999999999876433 344444444332 5888999998 99
Q ss_pred EE--EECCEEE
Q 039295 104 IV--FIGGKLI 112 (139)
Q Consensus 104 ~I--fi~g~~i 112 (139)
+| |.||+.+
T Consensus 118 tvlvfknGe~~ 128 (150)
T KOG0910|consen 118 TVLVFKNGEKV 128 (150)
T ss_pred EEEEEECCEEe
Confidence 88 7799765
No 66
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=98.49 E-value=5.9e-07 Score=62.19 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=46.7
Q ss_pred HHHHHHhc--CC-c-EEEEEcCCChhHHHHHHHHhhCCCC----CeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--
Q 039295 36 EKVARVAS--ES-A-VVIFSVSSCCMCHAVKRLFCGMGVN----PTVYELDHDPRGADIERVLMRLLANSSAVPVPIV-- 105 (139)
Q Consensus 36 ~~~~~~i~--~~-~-Vvif~~~~Cp~C~~ak~~L~~~~v~----~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I-- 105 (139)
+.+++++. .+ . |+-|+++|||.|+...+.|+++--+ ..++.||.+.. ..+.+.+|..+ +|++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~-----~~la~~~~V~~---iPTf~~ 74 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEV-----PDFNKMYELYD---PPTVMF 74 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCC-----HHHHHHcCCCC---CCEEEE
Confidence 34455553 23 2 4449999999999999998764322 23344444433 25888899998 9988
Q ss_pred EECCEEEe
Q 039295 106 FIGGKLIG 113 (139)
Q Consensus 106 fi~g~~iG 113 (139)
|-+|+.++
T Consensus 75 fk~G~~v~ 82 (114)
T cd02954 75 FFRNKHMK 82 (114)
T ss_pred EECCEEEE
Confidence 67888764
No 67
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=98.44 E-value=8.5e-07 Score=59.29 Aligned_cols=67 Identities=12% Similarity=0.284 Sum_probs=41.4
Q ss_pred HHHHHHhcCCc--EEEEEcCCChhHHHHHHHH-------hhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 36 EKVARVASESA--VVIFSVSSCCMCHAVKRLF-------CGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 36 ~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L-------~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
+.+.++++.++ ++.|+.+||++|+.....+ +.++-.+..+.+|...+... ..++.+.++..+ +|+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~-~~~~~~~~~i~~---~Pti~ 77 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPE-ITALLKRFGVFG---PPTYL 77 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHH-HHHHHHHcCCCC---CCEEE
Confidence 34566666665 5569999999999987654 11221344444544322111 136778889888 99883
No 68
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.41 E-value=1.7e-06 Score=59.44 Aligned_cols=72 Identities=15% Similarity=0.268 Sum_probs=48.2
Q ss_pred HHHHHHhcCC-c-EEEEEcCCChhHHHHHHHHhhCCC---CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EEC
Q 039295 36 EKVARVASES-A-VVIFSVSSCCMCHAVKRLFCGMGV---NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIG 108 (139)
Q Consensus 36 ~~~~~~i~~~-~-Vvif~~~~Cp~C~~ak~~L~~~~v---~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~ 108 (139)
+.+.+.++.+ . |+.|+.+||+.|+.+...|+++.- ...++.||.+... .+.+.++... +|++ |-+
T Consensus 13 ~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~-----~l~~~~~v~~---vPt~l~fk~ 84 (113)
T cd02989 13 KEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAP-----FLVEKLNIKV---LPTVILFKN 84 (113)
T ss_pred HHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCH-----HHHHHCCCcc---CCEEEEEEC
Confidence 4455555443 4 444889999999999988876421 2345555544432 5778889888 9988 679
Q ss_pred CEEEecc
Q 039295 109 GKLIGAM 115 (139)
Q Consensus 109 g~~iGG~ 115 (139)
|+.++..
T Consensus 85 G~~v~~~ 91 (113)
T cd02989 85 GKTVDRI 91 (113)
T ss_pred CEEEEEE
Confidence 9866543
No 69
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=98.39 E-value=4e-06 Score=52.82 Aligned_cols=73 Identities=8% Similarity=0.004 Sum_probs=58.2
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~ 123 (139)
+++|+.+.||+|.+++-+|...|++|+.+.++..... ...+.+.+.+.... +|.+..+|..+.....+..+..
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~P~~~---vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGE-HKSPEHLARNPFGQ---IPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccc-cCCHHHHhhCCCCC---CCEEEECCEEEEcHHHHHHHHh
Confidence 6899999999999999999999999999888764321 11135777777777 9999999998888887777643
No 70
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=98.39 E-value=2.3e-06 Score=53.65 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=47.3
Q ss_pred CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHH
Q 039295 53 SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 53 ~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~ 123 (139)
+.||+|.+++.+|+..|++|+.++++... ...... +|++..+|+.+.++..+..+.+
T Consensus 14 s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-----------~~p~g~---vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 14 SLSPECLKVETYLRMAGIPYEVVFSSNPW-----------RSPTGK---LPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCCHHHHHHHHHHHhCCCceEEEecCCcc-----------cCCCcc---cCEEEECCEEEcCHHHHHHHHh
Confidence 48999999999999999999999887532 233445 9999999999999988877644
No 71
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=98.37 E-value=5.2e-06 Score=52.20 Aligned_cols=69 Identities=16% Similarity=0.160 Sum_probs=54.0
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhC-CCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLA-NSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g-~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
+.+|+.+.||+|.+++-+|...|++|+.++++..... +.+.+... ... +|.+..+|..+.....+.++.
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~----~~~~~~~p~~~~---vP~l~~~~~~l~eS~aI~~yL 70 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKS----ELLLASNPVHKK---IPVLLHNGKPICESLIIVEYI 70 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCC----HHHHHhCCCCCC---CCEEEECCEEeehHHHHHHHH
Confidence 4689999999999999999999999999887764222 24555554 356 999999998888877776653
No 72
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=98.36 E-value=1.5e-06 Score=60.06 Aligned_cols=37 Identities=19% Similarity=0.345 Sum_probs=33.9
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCC
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPR 82 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~ 82 (139)
.|+||+.+.|+.|++|+++|++.|++|+++|+-.++-
T Consensus 1 ~i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~ 37 (113)
T cd03033 1 DIIFYEKPGCANNARQKALLEAAGHEVEVRDLLTEPW 37 (113)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCcEEeehhcCCC
Confidence 4899999999999999999999999999999977653
No 73
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.35 E-value=3.6e-06 Score=53.33 Aligned_cols=71 Identities=17% Similarity=0.308 Sum_probs=56.9
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
+++|..+.||+|.+++-+|.++|++|+.+.++...... ..+.+.++..... +|++..||..+.....+..+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~-~~~~~~~inP~g~---vP~L~~~g~~l~Es~aI~~y 71 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEH-NEPWFMRLNPTGE---VPVLIHGDNIICDPTQIIDY 71 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCcc-CCHHHHHhCcCCC---CCEEEECCEEEEcHHHHHHH
Confidence 47899999999999999999999999999887643211 1135778887777 99999999988887777654
No 74
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.32 E-value=1.4e-06 Score=55.74 Aligned_cols=54 Identities=19% Similarity=0.394 Sum_probs=38.2
Q ss_pred cEEEEEcCCChhHHHHHHHH----hhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEE
Q 039295 46 AVVIFSVSSCCMCHAVKRLF----CGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKL 111 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L----~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~ 111 (139)
+|.+ ..++||+|..+..++ .+++++++.+++ .+. +++ ..+|..+ +|.++|||+.
T Consensus 2 ~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~----~~~-~~ygv~~---vPalvIng~~ 59 (76)
T PF13192_consen 2 KIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDF----EEI-EKYGVMS---VPALVINGKV 59 (76)
T ss_dssp EEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTH----HHH-HHTT-SS---SSEEEETTEE
T ss_pred EEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCH----HHH-HHcCCCC---CCEEEECCEE
Confidence 3667 466699999777655 456777777765 222 245 7789998 9999999984
No 75
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.30 E-value=3.9e-06 Score=56.41 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=40.2
Q ss_pred EEEEEcCCChhHHHHHHHHhhCC---CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMG---VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLI 112 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~---v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~i 112 (139)
|+-|+.+||+.|+...+.|+++. -...++.||.+.+.. ...+.+.++... +|++ |-+|+.+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~--~~~l~~~~~V~~---~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDS--TMELCRREKIIE---VPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChH--HHHHHHHcCCCc---CCEEEEEeCCeEE
Confidence 44499999999999988887542 123444454443321 125777788888 9987 4488755
No 76
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=98.28 E-value=4.9e-06 Score=55.09 Aligned_cols=60 Identities=18% Similarity=0.360 Sum_probs=41.1
Q ss_pred EEEEEcCCChhHHHHHHHHhhC----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEEec
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGM----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLIGA 114 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~iGG 114 (139)
+++|+.+||+.|+...+.|++. +-.+....+|.+... ++...++... +|++ |-+|+.++.
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~-----~l~~~~~v~~---vPt~~i~~~g~~v~~ 82 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ-----EIAEAAGIMG---TPTVQFFKDKELVKE 82 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH-----HHHHHCCCee---ccEEEEEECCeEEEE
Confidence 5568899999999999888662 223444555544432 5677778887 9988 447876643
No 77
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=98.26 E-value=7.3e-06 Score=54.58 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=53.0
Q ss_pred CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHH
Q 039295 53 SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 53 ~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~ 123 (139)
..||||++++-.|.+.|++|+.+++|...... .+.++.-... +|++..+|..+...+.+.++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~----~~~~~nP~g~---vPvL~~~~~~i~eS~~I~eYLd 83 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPE----DLKDLAPGTQ---PPFLLYNGEVKTDNNKIEEFLE 83 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCH----HHHHhCCCCC---CCEEEECCEEecCHHHHHHHHH
Confidence 47999999999999999999999998754432 4777777777 9999999999988888877643
No 78
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.26 E-value=8.2e-06 Score=51.64 Aligned_cols=57 Identities=25% Similarity=0.375 Sum_probs=41.6
Q ss_pred cEEEEEcCCChhHHHHHHHHhh-----CCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE--CCEEE
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCG-----MGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI--GGKLI 112 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~-----~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi--~g~~i 112 (139)
-+++|+.+||++|..+.+.|++ .++.+..++++... .+...++... +|++++ +|+.+
T Consensus 13 ~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~v~~---~P~~~~~~~g~~~ 76 (93)
T cd02947 13 VVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENP-------ELAEEYGVRS---IPTFLFFKNGKEV 76 (93)
T ss_pred EEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCCh-------hHHHhcCccc---ccEEEEEECCEEE
Confidence 3777999999999999999977 44555555555432 4666678887 999866 78744
No 79
>PTZ00051 thioredoxin; Provisional
Probab=98.25 E-value=7.2e-06 Score=53.88 Aligned_cols=72 Identities=15% Similarity=0.271 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCc--EEEEEcCCChhHHHHHHHHhhCC---CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EE
Q 039295 35 MEKVARVASESA--VVIFSVSSCCMCHAVKRLFCGMG---VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FI 107 (139)
Q Consensus 35 ~~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~~~---v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi 107 (139)
.+.++++++.++ ++.|+.+||+.|+.....|..+. ..+.+..+|.+.. ..+.+.++... +|++ |-
T Consensus 8 ~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~---~Pt~~~~~ 79 (98)
T PTZ00051 8 QAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDEL-----SEVAEKENITS---MPTFKVFK 79 (98)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcch-----HHHHHHCCCce---eeEEEEEe
Confidence 355667776665 45599999999999988887632 1234444444432 25677788887 9987 55
Q ss_pred CCEEEec
Q 039295 108 GGKLIGA 114 (139)
Q Consensus 108 ~g~~iGG 114 (139)
+|+.++.
T Consensus 80 ~g~~~~~ 86 (98)
T PTZ00051 80 NGSVVDT 86 (98)
T ss_pred CCeEEEE
Confidence 7765543
No 80
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.25 E-value=1.4e-05 Score=52.32 Aligned_cols=59 Identities=29% Similarity=0.422 Sum_probs=43.9
Q ss_pred EEEEEcCCChhHHHHHHHHhhC----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEEe
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGM----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLIG 113 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~iG 113 (139)
|+.|+++||++|+..++.|.++ +-.+.+..||.+.. ..+.+.++... +|++ |-+|+.+.
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~v~~---~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDEN-----KELCKKYGVKS---VPTIIFFKNGKEVK 85 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTS-----HHHHHHTTCSS---SSEEEEEETTEEEE
T ss_pred EEEEeCCCCCccccccceecccccccccccccchhhhhcc-----chhhhccCCCC---CCEEEEEECCcEEE
Confidence 6668999999999999888653 32566666666544 25888889988 9998 56787664
No 81
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=98.24 E-value=7.7e-06 Score=54.17 Aligned_cols=67 Identities=13% Similarity=0.214 Sum_probs=45.6
Q ss_pred HHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCC-----CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE--C
Q 039295 36 EKVARVASESAVVIFSVSSCCMCHAVKRLFCGMG-----VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI--G 108 (139)
Q Consensus 36 ~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~-----v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi--~ 108 (139)
+.++++++...++.|+.+||++|+...+.|+++. ..+....+|.+.+. .+.+.++..+ +|++++ +
T Consensus 9 ~~f~~~~~~~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~-----~~~~~~~i~~---~Pt~~~~~~ 80 (101)
T cd02994 9 SNWTLVLEGEWMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEP-----GLSGRFFVTA---LPTIYHAKD 80 (101)
T ss_pred hhHHHHhCCCEEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCH-----hHHHHcCCcc---cCEEEEeCC
Confidence 3456667666788899999999999988886542 22344444443322 4667778887 999954 5
Q ss_pred CE
Q 039295 109 GK 110 (139)
Q Consensus 109 g~ 110 (139)
|+
T Consensus 81 g~ 82 (101)
T cd02994 81 GV 82 (101)
T ss_pred CC
Confidence 54
No 82
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.24 E-value=8.8e-06 Score=50.93 Aligned_cols=68 Identities=7% Similarity=0.096 Sum_probs=53.1
Q ss_pred EEEEEcCCChhHHHHHHHHhh--CCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE-CCEEEeccHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCG--MGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI-GGKLIGAMDRVMAS 121 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~--~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi-~g~~iGG~~~l~~l 121 (139)
+++|+.+.||+|.+++-+|.. .+++|+.+.++..... +++.+...... +|.+.. ||..+.....+..+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~----~~~~~~~p~~~---vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDD----ESLLAVNPLGK---IPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCC----hHHHHhCCCCC---CCEEEECCCCEEECHHHHHhh
Confidence 368999999999999999999 8999999988754322 24566666666 999975 78888777766654
No 83
>PRK09381 trxA thioredoxin; Provisional
Probab=98.22 E-value=1e-05 Score=54.35 Aligned_cols=61 Identities=16% Similarity=0.218 Sum_probs=41.5
Q ss_pred EEEEEcCCChhHHHHHHHHhh----CCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE--ECCEEEecc
Q 039295 47 VVIFSVSSCCMCHAVKRLFCG----MGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF--IGGKLIGAM 115 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~----~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If--i~g~~iGG~ 115 (139)
++.|+.+|||.|+...+.|++ ++-.+.+..+|.+... .+.+.++..+ +|+++ -+|+.++.+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~---~Pt~~~~~~G~~~~~~ 91 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNP-----GTAPKYGIRG---IPTLLLFKNGEVAATK 91 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCCh-----hHHHhCCCCc---CCEEEEEeCCeEEEEe
Confidence 555999999999999888865 3323444455544332 4666778888 99884 488877543
No 84
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.2e-06 Score=67.88 Aligned_cols=65 Identities=18% Similarity=0.347 Sum_probs=48.9
Q ss_pred cCCcEEE-EEcCCChhHHHHHHHHhhC----CCCCe--EEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEEe
Q 039295 43 SESAVVI-FSVSSCCMCHAVKRLFCGM----GVNPT--VYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLIG 113 (139)
Q Consensus 43 ~~~~Vvi-f~~~~Cp~C~~ak~~L~~~----~v~~~--~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~iG 113 (139)
...+|+| |+.|||+.|+...+.|..+ +=.|. .+|+|.++ .+...+|..+ +|+| |++|+.|.
T Consensus 42 ~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p-------~vAaqfgiqs---IPtV~af~dGqpVd 111 (304)
T COG3118 42 REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEP-------MVAAQFGVQS---IPTVYAFKDGQPVD 111 (304)
T ss_pred cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcch-------hHHHHhCcCc---CCeEEEeeCCcCcc
Confidence 4435555 8999999999999999764 33344 44555554 5777889998 9998 99999998
Q ss_pred ccHH
Q 039295 114 AMDR 117 (139)
Q Consensus 114 G~~~ 117 (139)
||.-
T Consensus 112 gF~G 115 (304)
T COG3118 112 GFQG 115 (304)
T ss_pred ccCC
Confidence 8864
No 85
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.21 E-value=9.5e-06 Score=55.31 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=45.7
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCC---CeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEEeccHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVN---PTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLIGAMDRVMAS 121 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~---~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~iGG~~~l~~l 121 (139)
|+.|+.+||+.|+.....|+++.-. ..++.||.+.. .+.+.++... +|++ |-+|+.++...-...+
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~------~l~~~~~i~~---~Pt~~~f~~G~~v~~~~G~~~~ 98 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA------FLVNYLDIKV---LPTLLVYKNGELIDNIVGFEEL 98 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh------HHHHhcCCCc---CCEEEEEECCEEEEEEecHHHh
Confidence 4559999999999999888764222 34455555432 4677788888 9988 7799887655444433
No 86
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=98.20 E-value=1.1e-05 Score=50.22 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=54.7
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
++|+...|++|.+++.+|...|++|+.+.++..+... ..+.+.+...... +|++..+|..+.....+..+
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~-~~~~~~~~~p~~~---vP~l~~~~~~l~es~aI~~y 71 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQ-LSPAYRALNPQGL---VPTLVIDGLVLTQSLAIIEY 71 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCc-CChHHHHhCCCCC---CCEEEECCEEEEcHHHHHHH
Confidence 6898999999999999999999999998887643211 1135666777667 99999999988777776654
No 87
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.18 E-value=6.9e-06 Score=62.20 Aligned_cols=64 Identities=19% Similarity=0.388 Sum_probs=46.1
Q ss_pred HhcCCcEEEEEc---CCChhHHHHHHHHhhCC-----CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE--CCE
Q 039295 41 VASESAVVIFSV---SSCCMCHAVKRLFCGMG-----VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI--GGK 110 (139)
Q Consensus 41 ~i~~~~Vvif~~---~~Cp~C~~ak~~L~~~~-----v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi--~g~ 110 (139)
+.....|++|+. +|||+|+.+.++|+++. +.+..+++|.+.. ..+.+.+|... +|++.+ ||+
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~-----~~l~~~~~V~~---~Pt~~~f~~g~ 88 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPED-----KEEAEKYGVER---VPTTIILEEGK 88 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCccc-----HHHHHHcCCCc---cCEEEEEeCCe
Confidence 333446888988 99999999999997653 3345667765543 26888899998 999854 655
Q ss_pred EE
Q 039295 111 LI 112 (139)
Q Consensus 111 ~i 112 (139)
.+
T Consensus 89 ~~ 90 (215)
T TIGR02187 89 DG 90 (215)
T ss_pred ee
Confidence 44
No 88
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.18 E-value=1.3e-05 Score=53.67 Aligned_cols=69 Identities=22% Similarity=0.300 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCc--EEEEEcCCChhHHHHHHHHhhC----CCC-CeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--
Q 039295 35 MEKVARVASESA--VVIFSVSSCCMCHAVKRLFCGM----GVN-PTVYELDHDPRGADIERVLMRLLANSSAVPVPIV-- 105 (139)
Q Consensus 35 ~~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~~----~v~-~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I-- 105 (139)
.+.+.+++..++ |+.|+.+||++|+...+.|.++ +-. ..+..+|.+ . ..+.+.++... +|++
T Consensus 7 ~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~-----~~~~~~~~v~~---~Pt~~~ 77 (102)
T cd02948 7 QEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T-----IDTLKRYRGKC---EPTFLF 77 (102)
T ss_pred HHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C-----HHHHHHcCCCc---CcEEEE
Confidence 445566665554 4559999999999988888653 211 234444444 2 14667788888 9976
Q ss_pred EECCEEE
Q 039295 106 FIGGKLI 112 (139)
Q Consensus 106 fi~g~~i 112 (139)
|-+|+.+
T Consensus 78 ~~~g~~~ 84 (102)
T cd02948 78 YKNGELV 84 (102)
T ss_pred EECCEEE
Confidence 6678744
No 89
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.17 E-value=1.2e-05 Score=55.54 Aligned_cols=72 Identities=24% Similarity=0.373 Sum_probs=43.2
Q ss_pred HHHHHHHhcCC-c--EEEEEcCCChhHHHHHHHHhh-------CCCCCeEEEecCCCCh--H------HHHHHHHHHhCC
Q 039295 35 MEKVARVASES-A--VVIFSVSSCCMCHAVKRLFCG-------MGVNPTVYELDHDPRG--A------DIERVLMRLLAN 96 (139)
Q Consensus 35 ~~~~~~~i~~~-~--Vvif~~~~Cp~C~~ak~~L~~-------~~v~~~~~~vd~~~~~--~------~~~~~L~~~~g~ 96 (139)
.+.++++.+.+ + ++.|+.+||++|++..+.+.+ +.-.+..+.|+.+.+. . .-...+...++.
T Consensus 3 ~~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 3 YEDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 34566677666 3 555999999999998765521 2223444444443221 0 001367778888
Q ss_pred CCCCCccEE-EECC
Q 039295 97 SSAVPVPIV-FIGG 109 (139)
Q Consensus 97 ~~~~~vP~I-fi~g 109 (139)
.. +|++ |+++
T Consensus 83 ~~---~Pt~~~~~~ 93 (125)
T cd02951 83 RF---TPTVIFLDP 93 (125)
T ss_pred cc---ccEEEEEcC
Confidence 87 9996 5553
No 90
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=98.17 E-value=2.3e-05 Score=49.37 Aligned_cols=70 Identities=9% Similarity=0.077 Sum_probs=56.1
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
++++|..+.|+.|.+++-+|.+.|++|+.+.++.. ...+++........ +|++..||..+.....+..+.
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~----~~~~~~~~~~p~~~---vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYE----EWQESLKPKMLFGQ---LPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHH----HhhhhhhccCCCCC---CCEEEECCEEEEcHHHHHHHH
Confidence 36789889999999999999999999999988752 11234656666666 999999999998888877664
No 91
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.16 E-value=9e-06 Score=56.26 Aligned_cols=61 Identities=20% Similarity=0.422 Sum_probs=42.4
Q ss_pred CCcEEE-EEcCCChhHHHHHHHHhhCCCC----CeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEE
Q 039295 44 ESAVVI-FSVSSCCMCHAVKRLFCGMGVN----PTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLI 112 (139)
Q Consensus 44 ~~~Vvi-f~~~~Cp~C~~ak~~L~~~~v~----~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~i 112 (139)
...|+| |+++|||.|+..-++|.++--+ ..++.||.++. ..+.+.++... .|+. |-+|+++
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev-----~dva~~y~I~a---mPtfvffkngkh~ 81 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKV-----PVYTQYFDISY---IPSTIFFFNGQHM 81 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecccc-----HHHHHhcCcee---CcEEEEEECCcEE
Confidence 344555 9999999999999999876422 23444444432 25888888887 8876 6788876
No 92
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.15 E-value=1.6e-05 Score=52.04 Aligned_cols=58 Identities=14% Similarity=0.261 Sum_probs=42.0
Q ss_pred EEEEEcCCChhHHHHHHHHhhC----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGM----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLI 112 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~i 112 (139)
++.|+.+||+.|+.+...|+++ ...+..+.+|.+.. .++.+.++... +|++ |.+|+.+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~-----~~~~~~~~i~~---~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEEL-----PEISEKFEITA---VPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccC-----HHHHHhcCCcc---ccEEEEEECCEEE
Confidence 5569999999999998888753 33456666665543 25777788888 9977 6678754
No 93
>PRK10996 thioredoxin 2; Provisional
Probab=98.12 E-value=1.9e-05 Score=55.98 Aligned_cols=71 Identities=15% Similarity=0.327 Sum_probs=49.0
Q ss_pred HHHHHHHHhcCCc--EEEEEcCCChhHHHHHHHHhhC----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--
Q 039295 34 PMEKVARVASESA--VVIFSVSSCCMCHAVKRLFCGM----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV-- 105 (139)
Q Consensus 34 ~~~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~~----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I-- 105 (139)
..+.++++++.++ ++.|+.+||++|+.....|.+. +-.+.++.+|.+... .+.+.++... +|++
T Consensus 41 ~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~-----~l~~~~~V~~---~Ptlii 112 (139)
T PRK10996 41 TGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAER-----ELSARFRIRS---IPTIMI 112 (139)
T ss_pred CHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCH-----HHHHhcCCCc---cCEEEE
Confidence 3456667776554 5559999999999987777653 333555566655432 5777889888 9988
Q ss_pred EECCEEE
Q 039295 106 FIGGKLI 112 (139)
Q Consensus 106 fi~g~~i 112 (139)
|-+|+.+
T Consensus 113 ~~~G~~v 119 (139)
T PRK10996 113 FKNGQVV 119 (139)
T ss_pred EECCEEE
Confidence 4588855
No 94
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.12 E-value=1.1e-05 Score=54.21 Aligned_cols=67 Identities=13% Similarity=0.208 Sum_probs=44.1
Q ss_pred HHHHHHhcCCc--EEEEEcCCChhHHHHHHHHhhCC----------CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCcc
Q 039295 36 EKVARVASESA--VVIFSVSSCCMCHAVKRLFCGMG----------VNPTVYELDHDPRGADIERVLMRLLANSSAVPVP 103 (139)
Q Consensus 36 ~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~~~----------v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP 103 (139)
+.++++++.++ ++.|+.+||++|+...+.+++.. -.+.+..||.+.. ..+.+.+|..+ +|
T Consensus 9 ~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-----~~l~~~~~v~~---~P 80 (108)
T cd02996 9 GNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-----SDIADRYRINK---YP 80 (108)
T ss_pred hhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-----HHHHHhCCCCc---CC
Confidence 34555665554 55699999999999988886421 0233444444433 25778889988 99
Q ss_pred EE--EECCE
Q 039295 104 IV--FIGGK 110 (139)
Q Consensus 104 ~I--fi~g~ 110 (139)
++ |-+|+
T Consensus 81 tl~~~~~g~ 89 (108)
T cd02996 81 TLKLFRNGM 89 (108)
T ss_pred EEEEEeCCc
Confidence 88 55665
No 95
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.11 E-value=2.2e-05 Score=53.43 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=39.4
Q ss_pred EEEEEcCCChhHHHHHHHHhhCC-----CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEEe
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMG-----VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLIG 113 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~-----v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~iG 113 (139)
++.|+.+||+.|+...+.|.++. ....+..||.+.+ ..+.+..|..+ +|++ |.+|+.++
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~-----~~l~~~~~V~~---~Pt~~i~~~g~~~~ 93 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE-----RRLARKLGAHS---VPAIVGIINGQVTF 93 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc-----HHHHHHcCCcc---CCEEEEEECCEEEE
Confidence 55599999999998887765431 1233444444432 24677789888 9987 56887663
No 96
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.09 E-value=1.2e-05 Score=53.34 Aligned_cols=68 Identities=18% Similarity=0.260 Sum_probs=43.8
Q ss_pred HHHHHhcCCc--EEEEEcCCChhHHHHHHHHhhCCC----CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EEC
Q 039295 37 KVARVASESA--VVIFSVSSCCMCHAVKRLFCGMGV----NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIG 108 (139)
Q Consensus 37 ~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~~~v----~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~ 108 (139)
.+++.+...+ ++.|+.+||++|+.....|+++.- .+.+..||-+.. ..+.+.++... +|++ |-+
T Consensus 10 ~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~-----~~~~~~~~v~~---~Pt~~~~~~ 81 (101)
T cd03003 10 DFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD-----RMLCRSQGVNS---YPSLYVFPS 81 (101)
T ss_pred hHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc-----HHHHHHcCCCc---cCEEEEEcC
Confidence 4455555544 555999999999999888865421 233444444433 24677778888 9998 446
Q ss_pred CEEE
Q 039295 109 GKLI 112 (139)
Q Consensus 109 g~~i 112 (139)
|+.+
T Consensus 82 g~~~ 85 (101)
T cd03003 82 GMNP 85 (101)
T ss_pred CCCc
Confidence 6533
No 97
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.08 E-value=1.4e-05 Score=53.81 Aligned_cols=70 Identities=17% Similarity=0.230 Sum_probs=39.9
Q ss_pred cEEEEEcCCChhHHHHHHHHhh-------CCCCCeEEEecCCCCh---------------HHHHHHHHHHhCCCCCCCcc
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCG-------MGVNPTVYELDHDPRG---------------ADIERVLMRLLANSSAVPVP 103 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~-------~~v~~~~~~vd~~~~~---------------~~~~~~L~~~~g~~~~~~vP 103 (139)
.|++|+.+|||+|++..+.+.. +...+..+.++..... ..-..++...+|... +|
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~g---tP 84 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNG---TP 84 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--S---SS
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCc---cC
Confidence 4788999999999998776653 1113455555443322 112346888889888 99
Q ss_pred EEEE-C--CE---EEeccHHH
Q 039295 104 IVFI-G--GK---LIGAMDRV 118 (139)
Q Consensus 104 ~Ifi-~--g~---~iGG~~~l 118 (139)
++++ | |+ .+.|+-+-
T Consensus 85 t~~~~d~~G~~v~~~~G~~~~ 105 (112)
T PF13098_consen 85 TIVFLDKDGKIVYRIPGYLSP 105 (112)
T ss_dssp EEEECTTTSCEEEEEESS--H
T ss_pred EEEEEcCCCCEEEEecCCCCH
Confidence 9954 4 66 45566543
No 98
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.08 E-value=1.1e-05 Score=59.68 Aligned_cols=92 Identities=16% Similarity=0.258 Sum_probs=55.5
Q ss_pred HHHHHHHhcCC---cEEE-EEcCCChhHHHHHHHHhhCCC---CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--
Q 039295 35 MEKVARVASES---AVVI-FSVSSCCMCHAVKRLFCGMGV---NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV-- 105 (139)
Q Consensus 35 ~~~~~~~i~~~---~Vvi-f~~~~Cp~C~~ak~~L~~~~v---~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I-- 105 (139)
.++.+.+.... .|+| |+.+||+.|+.+.+.|+.+-- ...++.|+.+.. .+...++... +|++
T Consensus 71 ~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~------~l~~~f~v~~---vPTlll 141 (175)
T cd02987 71 EQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT------GASDEFDTDA---LPALLV 141 (175)
T ss_pred HHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch------hhHHhCCCCC---CCEEEE
Confidence 44444443332 4444 889999999999888865432 235555555532 4677788888 9987
Q ss_pred EECCEEEe---ccHHHHH-HHHcCChHHHHHhcC
Q 039295 106 FIGGKLIG---AMDRVMA-SHINGTLVPLLKEAG 135 (139)
Q Consensus 106 fi~g~~iG---G~~~l~~-l~~~g~L~~~L~~~g 135 (139)
|.+|+.++ |+++... -.....|+.+|.+.|
T Consensus 142 yk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~g 175 (175)
T cd02987 142 YKGGELIGNFVRVTEDLGEDFDAEDLESFLVEYG 175 (175)
T ss_pred EECCEEEEEEechHHhcCCCCCHHHHHHHHHhcC
Confidence 77998774 4443211 112234566665544
No 99
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=98.07 E-value=1.6e-05 Score=55.25 Aligned_cols=40 Identities=15% Similarity=0.378 Sum_probs=35.8
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGAD 85 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~ 85 (139)
.|+||+.+.|.-|++|+++|+++|++|.++++...+-..+
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~ 41 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSRE 41 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHH
Confidence 4899999999999999999999999999999987755444
No 100
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=98.07 E-value=9e-06 Score=51.00 Aligned_cols=67 Identities=15% Similarity=0.186 Sum_probs=49.7
Q ss_pred CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE-CCEEEeccHHHHHHHH
Q 039295 54 SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI-GGKLIGAMDRVMASHI 123 (139)
Q Consensus 54 ~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi-~g~~iGG~~~l~~l~~ 123 (139)
.||||+++.-+|..+|++|+...++..+.+..--+.+.+..+..+ ||++.. +|+.+.....+..+.+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~---VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGK---VPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-S---SSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeE---EEEEEECCCCEeeCHHHHHHHHh
Confidence 599999999999999999998877442222111125788888888 999998 8999998888877643
No 101
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.06 E-value=3.5e-05 Score=54.90 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=41.7
Q ss_pred HHHhcCCc--EEEEEcCCChhHHHHHHHHhhC----C--CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE-EE--
Q 039295 39 ARVASESA--VVIFSVSSCCMCHAVKRLFCGM----G--VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV-FI-- 107 (139)
Q Consensus 39 ~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~~----~--v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I-fi-- 107 (139)
++++..++ |+.|+.+||++|+.....|.++ + +.+..+++|.... ..+.+.++... +|++ |+
T Consensus 14 ~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~-----~~~~~~~~V~~---iPt~v~~~~ 85 (142)
T cd02950 14 EVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKW-----LPEIDRYRVDG---IPHFVFLDR 85 (142)
T ss_pred HHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCccc-----HHHHHHcCCCC---CCEEEEECC
Confidence 34444443 5559999999999988887653 2 3344445543321 14666778887 9988 45
Q ss_pred CCEEE
Q 039295 108 GGKLI 112 (139)
Q Consensus 108 ~g~~i 112 (139)
+|+.+
T Consensus 86 ~G~~v 90 (142)
T cd02950 86 EGNEE 90 (142)
T ss_pred CCCEE
Confidence 47654
No 102
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=98.06 E-value=3.1e-05 Score=48.94 Aligned_cols=62 Identities=10% Similarity=0.192 Sum_probs=49.8
Q ss_pred EEEEEcC-------CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHH
Q 039295 47 VVIFSVS-------SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVM 119 (139)
Q Consensus 47 Vvif~~~-------~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~ 119 (139)
+++|..+ .||+|.+++.+|...|++|+.++++.. +...... +|++..+|+.+.+...+.
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~~-----------~~~p~g~---vPvl~~~g~~l~eS~~I~ 67 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGLA-----------KRSPKGK---LPFIELNGEKIADSELII 67 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCcc-----------cCCCCCC---CCEEEECCEEEcCHHHHH
Confidence 5777776 579999999999999999998877642 2334555 999999999998888877
Q ss_pred HHH
Q 039295 120 ASH 122 (139)
Q Consensus 120 ~l~ 122 (139)
.+.
T Consensus 68 ~yL 70 (75)
T cd03080 68 DHL 70 (75)
T ss_pred HHH
Confidence 654
No 103
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=98.05 E-value=2e-05 Score=62.31 Aligned_cols=67 Identities=19% Similarity=0.407 Sum_probs=53.5
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
++++|--..||||-+++.+|+=++++|.+++|+.... .++ +...+.. ||.+.++|+-.....-|+.+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r-----~eI-k~SsykK---VPil~~~Geqm~dSsvIIs~ 156 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLR-----QEI-KWSSYKK---VPILLIRGEQMVDSSVIISL 156 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhh-----hhc-ccccccc---ccEEEeccceechhHHHHHH
Confidence 7999999999999999999999999999999986532 122 3345666 99999998876666655554
No 104
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=98.05 E-value=2e-05 Score=52.71 Aligned_cols=68 Identities=18% Similarity=0.299 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCc-EEEEEcCCChhHHHHHHHHhhC-------CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE
Q 039295 34 PMEKVARVASESA-VVIFSVSSCCMCHAVKRLFCGM-------GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV 105 (139)
Q Consensus 34 ~~~~~~~~i~~~~-Vvif~~~~Cp~C~~ak~~L~~~-------~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I 105 (139)
..+.++++.+... ++.|+.+|||+|++..+.|+++ +..+....+|.... ..+.+.++..+ +|++
T Consensus 5 ~~~~~~~~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~I~~---~Pt~ 76 (104)
T cd03000 5 LDDSFKDVRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-----SSIASEFGVRG---YPTI 76 (104)
T ss_pred chhhhhhhccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-----HhHHhhcCCcc---ccEE
Confidence 4455666555444 4448999999999888777543 22344444444332 25677788888 9998
Q ss_pred -EECC
Q 039295 106 -FIGG 109 (139)
Q Consensus 106 -fi~g 109 (139)
+++|
T Consensus 77 ~l~~~ 81 (104)
T cd03000 77 KLLKG 81 (104)
T ss_pred EEEcC
Confidence 3343
No 105
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=98.05 E-value=2.7e-05 Score=48.64 Aligned_cols=70 Identities=13% Similarity=0.115 Sum_probs=54.2
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
+++|..+.|+.|.+++-+|...|++|+.+.++...... ..+........ +|++..+|..+.....+..+.
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~---~~~~~~~p~~~---vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPE---LDLKPTLPFGQ---LPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhh---hhhccCCcCCC---CCEEEECCEEEEecHHHHHHh
Confidence 36888899999999999999999999999887532111 23455555666 999999999888887776653
No 106
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.05 E-value=3.2e-05 Score=53.32 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=46.1
Q ss_pred cEEEEEcCC--ChhHHHHHHHHhhCCCC----CeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEEeccH
Q 039295 46 AVVIFSVSS--CCMCHAVKRLFCGMGVN----PTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLIGAMD 116 (139)
Q Consensus 46 ~Vvif~~~~--Cp~C~~ak~~L~~~~v~----~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~iGG~~ 116 (139)
.|+.|+.+| ||.|+.+..+|.++--+ ..+..||.+.+. ++...++..+ +|++ |-||+.++.+.
T Consensus 30 ~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~-----~la~~f~V~s---IPTli~fkdGk~v~~~~ 100 (111)
T cd02965 30 LVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQ-----ALAARFGVLR---TPALLFFRDGRYVGVLA 100 (111)
T ss_pred EEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCH-----HHHHHcCCCc---CCEEEEEECCEEEEEEe
Confidence 466688886 99999999999765333 334455555442 6888899998 9988 66999886543
No 107
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.05 E-value=3.1e-05 Score=56.12 Aligned_cols=75 Identities=16% Similarity=0.219 Sum_probs=44.0
Q ss_pred HHHHHHhcCC--c--EEEEEcCCChhHHHHHHHHhhC----C-CCCeEEEecCCCChHHHHHHHHHHhCCCC---CCCcc
Q 039295 36 EKVARVASES--A--VVIFSVSSCCMCHAVKRLFCGM----G-VNPTVYELDHDPRGADIERVLMRLLANSS---AVPVP 103 (139)
Q Consensus 36 ~~~~~~i~~~--~--Vvif~~~~Cp~C~~ak~~L~~~----~-v~~~~~~vd~~~~~~~~~~~L~~~~g~~~---~~~vP 103 (139)
+.+++.+..+ + |+.|+++|||.|+...+.|+++ + -.+.+..||.+... .+.+.++..+ ..++|
T Consensus 36 ~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~-----~la~~~~V~~~~~v~~~P 110 (152)
T cd02962 36 KTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP-----NVAEKFRVSTSPLSKQLP 110 (152)
T ss_pred HHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH-----HHHHHcCceecCCcCCCC
Confidence 4455555322 2 6669999999999998887653 2 12334444443332 3555555432 01278
Q ss_pred EE--EECCEEEecc
Q 039295 104 IV--FIGGKLIGAM 115 (139)
Q Consensus 104 ~I--fi~g~~iGG~ 115 (139)
++ |.+|+.++..
T Consensus 111 T~ilf~~Gk~v~r~ 124 (152)
T cd02962 111 TIILFQGGKEVARR 124 (152)
T ss_pred EEEEEECCEEEEEE
Confidence 77 7899877443
No 108
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=98.04 E-value=2.8e-05 Score=50.61 Aligned_cols=58 Identities=17% Similarity=0.301 Sum_probs=39.7
Q ss_pred EEEEEcCCChhHHHHHHHHhhC----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE--CCEEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGM----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI--GGKLI 112 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi--~g~~i 112 (139)
++.|+.+||++|+.....|+++ +-...+..+|.+... .+.+.+|... +|++++ +|+.+
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~---~P~~~~~~~g~~~ 81 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENP-----DIAAKYGIRS---IPTLLLFKNGKEV 81 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCH-----HHHHHcCCCc---CCEEEEEeCCcEe
Confidence 5558899999999988777653 323455555544432 4667789888 999855 77654
No 109
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=98.04 E-value=1.3e-05 Score=51.66 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=49.6
Q ss_pred CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC-CEEEeccHHHHHHHH
Q 039295 53 SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG-GKLIGAMDRVMASHI 123 (139)
Q Consensus 53 ~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~-g~~iGG~~~l~~l~~ 123 (139)
++||+|.+++-+|...|++|+.+.++..... .....+ +..+... +|++..+ |..+.+...+..+..
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~-~~~~~~-~~~p~~~---vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIP-PILGEL-TSGGFYT---VPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcc-cccccc-cCCCCce---eCeEEECCCCEEeCHHHHHHHHH
Confidence 6899999999999999999999888754321 111233 4455566 9999988 888988888877643
No 110
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=98.03 E-value=6.5e-05 Score=47.93 Aligned_cols=71 Identities=7% Similarity=0.120 Sum_probs=54.4
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC---CEEEeccHHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG---GKLIGAMDRVMASH 122 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~---g~~iGG~~~l~~l~ 122 (139)
+++|+.+. |+|.+++-+|...|++|+.+.++..... ...+++.+...... +|++..+ |..+.....+..+.
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~-~~~~~~~~~~p~~~---vP~l~~~~~~g~~l~eS~aI~~yL 75 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGE-QKKPEFLKINPNGR---IPAIVDHNGTPLTVFESGAILLYL 75 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCc-ccCHHHHHhCcCCC---CCEEEeCCCCceEEEcHHHHHHHH
Confidence 67899886 9999999999999999999888753211 11135666777777 9999887 78888877776654
No 111
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=98.03 E-value=1.6e-05 Score=54.57 Aligned_cols=38 Identities=21% Similarity=0.420 Sum_probs=33.8
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGA 84 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~ 84 (139)
|+||+.+.|.-|++|+++|++.+++|.++|+-..+-..
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~ 38 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTA 38 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCH
Confidence 57999999999999999999999999999987765433
No 112
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=98.02 E-value=1.9e-05 Score=54.45 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=34.4
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGAD 85 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~ 85 (139)
|++|+.+.|.-|++|+++|++.|++|.++|+...+-..+
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~ 39 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKS 39 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHH
Confidence 579999999999999999999999999999877654443
No 113
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.01 E-value=2.6e-05 Score=52.28 Aligned_cols=53 Identities=13% Similarity=0.255 Sum_probs=36.4
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCC---CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGV---NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v---~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
++.|+.+||++|+.....|+++.- ....+.||.+... ..+.+.++... +|+++
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~----~~l~~~~~V~~---~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIK----PSLLSRYGVVG---FPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCC----HHHHHhcCCee---cCEEE
Confidence 555999999999999988876432 1334555554111 25777889888 99873
No 114
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=98.00 E-value=2.2e-05 Score=51.69 Aligned_cols=68 Identities=15% Similarity=0.251 Sum_probs=43.7
Q ss_pred HHHHHhcCCc-EEEEEcCCChhHHHHHHHHhhC----CC---CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--E
Q 039295 37 KVARVASESA-VVIFSVSSCCMCHAVKRLFCGM----GV---NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--F 106 (139)
Q Consensus 37 ~~~~~i~~~~-Vvif~~~~Cp~C~~ak~~L~~~----~v---~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--f 106 (139)
.+++.+..++ ++.|+++||++|+.....|+++ +- .+....+|.+... .+.+.++... +|++ |
T Consensus 9 ~f~~~~~~~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~~~~~~~v~~---~Pt~~~~ 80 (102)
T cd03005 9 NFDHHIAEGNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR-----ELCSEFQVRG---YPTLLLF 80 (102)
T ss_pred HHHHHhhcCCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh-----hhHhhcCCCc---CCEEEEE
Confidence 3555555554 4559999999999887777543 21 3455556554432 4666678887 9987 4
Q ss_pred ECCEEE
Q 039295 107 IGGKLI 112 (139)
Q Consensus 107 i~g~~i 112 (139)
-+|+.+
T Consensus 81 ~~g~~~ 86 (102)
T cd03005 81 KDGEKV 86 (102)
T ss_pred eCCCee
Confidence 566544
No 115
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.4e-05 Score=54.66 Aligned_cols=58 Identities=21% Similarity=0.372 Sum_probs=41.3
Q ss_pred cEEE-EEcCCChhHHHHHHHHhhCCCCC---eEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEE
Q 039295 46 AVVI-FSVSSCCMCHAVKRLFCGMGVNP---TVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKL 111 (139)
Q Consensus 46 ~Vvi-f~~~~Cp~C~~ak~~L~~~~v~~---~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~ 111 (139)
.|++ |+.+||+.|+.+.+++.++..+| .++.||.++ . ..+.+..+... +|++ +.+|+-
T Consensus 23 liVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde-~----~~~~~~~~V~~---~PTf~f~k~g~~ 86 (106)
T KOG0907|consen 23 LVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDE-L----EEVAKEFNVKA---MPTFVFYKGGEE 86 (106)
T ss_pred eEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEeccc-C----HhHHHhcCceE---eeEEEEEECCEE
Confidence 3444 99999999999999998875444 344444444 2 25777789888 9998 556653
No 116
>PRK10026 arsenate reductase; Provisional
Probab=97.99 E-value=2.7e-05 Score=55.81 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=35.1
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCCh
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRG 83 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~ 83 (139)
..|+||+.+.|.-|++|+++|+++|++|+++|+-.++-.
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt 40 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPT 40 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcC
Confidence 468999999999999999999999999999998776543
No 117
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=97.98 E-value=6.3e-05 Score=56.38 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=57.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
..+++|+.+.||+|.+++-+|.+.|++|+.+.|+..... +++.++..... ||++..||..+-....|..+.
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~----~~~~~~nP~g~---VPvL~~~g~~l~ES~AIl~YL 79 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLP----QDLIDLNPYQS---VPTLVDRELTLYESRIIMEYL 79 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCC----HHHHHhCCCCC---CCEEEECCEEeeCHHHHHHHH
Confidence 358899999999999999999999999999999864222 25667766667 999999998887777776654
No 118
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.98 E-value=0.00011 Score=48.07 Aligned_cols=58 Identities=16% Similarity=0.222 Sum_probs=41.7
Q ss_pred EEEEEcCCChhHHHHHHHHhhCC----CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMG----VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLI 112 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~----v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~i 112 (139)
++.|+.+||+.|+.....|.++. -.+.+..||.+... .+.+.++... +|++ |-+|+.+
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~-----~l~~~~~i~~---~Pt~~~~~~g~~~ 79 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQP-----QIAQQFGVQA---LPTVYLFAAGQPV 79 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCH-----HHHHHcCCCC---CCEEEEEeCCEEe
Confidence 55599999999999988886532 23455666655542 5777889888 9988 4577655
No 119
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.98 E-value=2.2e-05 Score=45.37 Aligned_cols=56 Identities=23% Similarity=0.489 Sum_probs=39.4
Q ss_pred EEEEEcCCChhHHHHHHHHh-----hCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECC
Q 039295 47 VVIFSVSSCCMCHAVKRLFC-----GMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGG 109 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~-----~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g 109 (139)
+++|..++|++|.++...+. ..++.+..++++....... .....+... +|++++.+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~---~P~~~~~~ 61 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEK----ELKRYGVGG---VPTLVVFG 61 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhh----HHHhCCCcc---ccEEEEEe
Confidence 47899999999999999999 4456666666666553221 123456666 99997765
No 120
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=97.98 E-value=3.4e-05 Score=58.04 Aligned_cols=69 Identities=16% Similarity=0.258 Sum_probs=54.0
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE-ECCEEEeccHHHHHHHHc
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF-IGGKLIGAMDRVMASHIN 124 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If-i~g~~iGG~~~l~~l~~~ 124 (139)
++|....||+|.+++-+|..+|++|+.++++..+. . ...+..+... +|++. .||..+.+...+..+..+
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~----~~~~~np~g~---vP~l~~~~g~~l~es~~I~~yL~~ 70 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-E----TPIRMIGAKQ---VPILQKDDGRAMPESLDIVAYFDK 70 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-h----hHHHhcCCCC---cceEEeeCCeEeccHHHHHHHHHH
Confidence 47889999999999999999999999887755432 1 2244555566 99997 788999999988886543
No 121
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.97 E-value=2.9e-05 Score=51.62 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=41.4
Q ss_pred HHHHHhc-CC--cEEEEEcCCChhHHHHHHHHhhCC----CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EE
Q 039295 37 KVARVAS-ES--AVVIFSVSSCCMCHAVKRLFCGMG----VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FI 107 (139)
Q Consensus 37 ~~~~~i~-~~--~Vvif~~~~Cp~C~~ak~~L~~~~----v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi 107 (139)
.+++.+. .+ -++.|+++||+.|+.....++++. -.+.+..||-+.. ..+.+.+|... +|++ |.
T Consensus 10 ~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~-----~~~~~~~~i~~---~Pt~~~~~ 81 (104)
T cd03004 10 DFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKY-----ESLCQQANIRA---YPTIRLYP 81 (104)
T ss_pred HHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCch-----HHHHHHcCCCc---ccEEEEEc
Confidence 4455443 22 355599999999999888876542 2234444554432 25777789888 9988 44
Q ss_pred CC
Q 039295 108 GG 109 (139)
Q Consensus 108 ~g 109 (139)
+|
T Consensus 82 ~g 83 (104)
T cd03004 82 GN 83 (104)
T ss_pred CC
Confidence 65
No 122
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.97 E-value=2.5e-05 Score=53.82 Aligned_cols=61 Identities=7% Similarity=0.061 Sum_probs=40.5
Q ss_pred hcCCc--EEEEEcCCChhHHHHHHHHhhCCCC----CeEEEecCCCChHHHHHHHH-HHhCCCCCCCccEE--EECCE
Q 039295 42 ASESA--VVIFSVSSCCMCHAVKRLFCGMGVN----PTVYELDHDPRGADIERVLM-RLLANSSAVPVPIV--FIGGK 110 (139)
Q Consensus 42 i~~~~--Vvif~~~~Cp~C~~ak~~L~~~~v~----~~~~~vd~~~~~~~~~~~L~-~~~g~~~~~~vP~I--fi~g~ 110 (139)
+..++ ++.|+.+||++|+..+..|+++.-. ..+..||-+.+. .+. +.++..+ +|++ |.+|+
T Consensus 26 ~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~-----~l~~~~~~I~~---~PTl~lf~~g~ 95 (113)
T cd03006 26 RTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQ-----GKCRKQKHFFY---FPVIHLYYRSR 95 (113)
T ss_pred ccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCCh-----HHHHHhcCCcc---cCEEEEEECCc
Confidence 45554 5569999999999999988765321 333444444332 354 5678887 9988 66776
No 123
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=97.95 E-value=0.00012 Score=46.12 Aligned_cols=72 Identities=8% Similarity=0.012 Sum_probs=55.7
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
+++|+.+.+++|+++.-+|...|++|+.+.++..... ...+.+.+...... +|++..+|..+.....+..+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~-~~~~~~~~~~p~~~---vP~L~~~~~~l~eS~aI~~Yl 72 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGE-QLTPEFKKINPFGK---VPAIVDGDFTLAESVAILRYL 72 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCC-cCCHHHHHhCcCCC---CCEEEECCEEEEcHHHHHHHH
Confidence 3689999999999999999999999999988764321 01125666767777 999999998887777766654
No 124
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=97.95 E-value=3.5e-05 Score=54.21 Aligned_cols=36 Identities=14% Similarity=0.335 Sum_probs=33.1
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCC
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDP 81 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~ 81 (139)
.|+||+.+.|.-|++|+++|++.|++|+++|+-..+
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDILKEP 37 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeccCCC
Confidence 578999999999999999999999999999986653
No 125
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.95 E-value=4.7e-05 Score=52.57 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=46.6
Q ss_pred cHHHHHHHHhcCCc--EEEEEcCCChhHHHHHHHHhhC------CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccE
Q 039295 33 EPMEKVARVASESA--VVIFSVSSCCMCHAVKRLFCGM------GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPI 104 (139)
Q Consensus 33 ~~~~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~~------~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~ 104 (139)
+..+.++++...++ ++.|+.+||++|+...+.+.+. ...|..++++.+++. ..+.++... .++|+
T Consensus 7 ~~~~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~------~~~~~~~~g-~~vPt 79 (117)
T cd02959 7 TLEDGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEP------KDEEFSPDG-GYIPR 79 (117)
T ss_pred eHHHHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCc------hhhhcccCC-Cccce
Confidence 45677777776654 4448999999999998887663 345677777766532 112233321 12898
Q ss_pred E-EE--CCEEEe
Q 039295 105 V-FI--GGKLIG 113 (139)
Q Consensus 105 I-fi--~g~~iG 113 (139)
+ |+ +|+.++
T Consensus 80 ~~f~~~~Gk~~~ 91 (117)
T cd02959 80 ILFLDPSGDVHP 91 (117)
T ss_pred EEEECCCCCCch
Confidence 8 55 566554
No 126
>PRK10853 putative reductase; Provisional
Probab=97.94 E-value=3e-05 Score=53.88 Aligned_cols=35 Identities=14% Similarity=0.362 Sum_probs=32.7
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCC
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDP 81 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~ 81 (139)
|+||+.+.|.-|++|+++|++.|++|+++|+-..+
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehccCC
Confidence 78999999999999999999999999999987654
No 127
>PRK10387 glutaredoxin 2; Provisional
Probab=97.93 E-value=4.8e-05 Score=56.52 Aligned_cols=70 Identities=16% Similarity=0.288 Sum_probs=54.4
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE-EECCEEEeccHHHHHHHHc
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV-FIGGKLIGAMDRVMASHIN 124 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I-fi~g~~iGG~~~l~~l~~~ 124 (139)
+++|+.+.||+|.+++-+|+..|++|+.++++..+. .. . .+..+... ||++ ..||..+.....|..+..+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~-~~---~-~~~~p~~~---VPvL~~~~g~~l~eS~aI~~yL~~ 71 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDE-AT---P-IRMIGQKQ---VPILQKDDGSYMPESLDIVHYIDE 71 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCch-hh---H-HHhcCCcc---cceEEecCCeEecCHHHHHHHHHH
Confidence 468999999999999999999999999988864432 11 1 34455566 9999 5688899988888776543
No 128
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=97.91 E-value=7.5e-05 Score=47.12 Aligned_cols=70 Identities=6% Similarity=0.021 Sum_probs=54.1
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC-CEEEeccHHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG-GKLIGAMDRVMASH 122 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~-g~~iGG~~~l~~l~ 122 (139)
++|+.+.||+|.+++-+|...|++|+.+.++...+.. .+.+.+...... +|++..+ |..+.....+..+.
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~--~~~~~~~nP~~~---vP~L~~~~g~~l~es~aI~~yL 72 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENK--TPEFLKKFPLGK---VPAFEGADGFCLFESNAIAYYV 72 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccC--CHHHHHhCCCCC---CCEEEcCCCCEEeeHHHHHHHH
Confidence 5789999999999999999999999999888653221 135777777777 9999984 77777666665553
No 129
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.87 E-value=0.00014 Score=46.86 Aligned_cols=62 Identities=16% Similarity=0.231 Sum_probs=42.9
Q ss_pred HHHHHhcCC--cEEEEEcCCChhHHHHHHHHhh----C--CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 37 KVARVASES--AVVIFSVSSCCMCHAVKRLFCG----M--GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 37 ~~~~~i~~~--~Vvif~~~~Cp~C~~ak~~L~~----~--~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
.+.+++... -+++|+++||++|+.+...|.+ + +-.+....++.+.. ..+.+.++... +|+++
T Consensus 7 ~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~i~~---~Pt~~ 76 (101)
T cd02961 7 NFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTAN-----NDLCSEYGVRG---YPTIK 76 (101)
T ss_pred HHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccch-----HHHHHhCCCCC---CCEEE
Confidence 455555555 4667999999999998888765 3 23455666655442 26778889887 99883
No 130
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=4.3e-05 Score=48.98 Aligned_cols=69 Identities=13% Similarity=0.232 Sum_probs=46.6
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChH-H---HHH---HHH--HHhCCCCCCCccEEEEC-CEEEeccH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGA-D---IER---VLM--RLLANSSAVPVPIVFIG-GKLIGAMD 116 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~-~---~~~---~L~--~~~g~~~~~~vP~Ifi~-g~~iGG~~ 116 (139)
-++|++..||.|..+...|+++++.|++++|..+-... + +++ ++- +..|.- ++|.+..+ |+.|-| +
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyi---GIPall~~d~~vVl~-~ 79 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYI---GIPALLTDDGKVVLG-D 79 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcc---cceEEEeCCCcEEEe-c
Confidence 38999999999999999999999999999997653211 1 011 111 112444 49999664 565555 4
Q ss_pred HHH
Q 039295 117 RVM 119 (139)
Q Consensus 117 ~l~ 119 (139)
|+.
T Consensus 80 Dl~ 82 (85)
T COG4545 80 DLS 82 (85)
T ss_pred hhh
Confidence 443
No 131
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.86 E-value=8.5e-05 Score=57.20 Aligned_cols=70 Identities=14% Similarity=0.327 Sum_probs=45.4
Q ss_pred cEEEEEcCCChhHHHHHHHHhhC---CCCCeEEEecC---CCC-------------h-H--------------------H
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGM---GVNPTVYELDH---DPR-------------G-A--------------------D 85 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~---~v~~~~~~vd~---~~~-------------~-~--------------------~ 85 (139)
.|++|+.+.||||+++...+.++ ++.+.++.+.. ++. . . +
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~~~v~ 189 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCDVDIA 189 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccccchHH
Confidence 48899999999999998888775 34443333321 111 0 0 0
Q ss_pred HHHHHHHHhCCCCCCCccEEEE-CCEEEeccHHH
Q 039295 86 IERVLMRLLANSSAVPVPIVFI-GGKLIGAMDRV 118 (139)
Q Consensus 86 ~~~~L~~~~g~~~~~~vP~Ifi-~g~~iGG~~~l 118 (139)
-..++.+..|... .|++++ ||+.+.|+.+.
T Consensus 190 ~~~~la~~lgi~g---TPtiv~~~G~~~~G~~~~ 220 (232)
T PRK10877 190 DHYALGVQFGVQG---TPAIVLSNGTLVPGYQGP 220 (232)
T ss_pred HhHHHHHHcCCcc---ccEEEEcCCeEeeCCCCH
Confidence 1223344456666 999988 99999997653
No 132
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.86 E-value=0.00011 Score=49.08 Aligned_cols=56 Identities=18% Similarity=0.239 Sum_probs=36.6
Q ss_pred cEEEEEcCCChhHHHHHHHHhhC----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGM----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
-++.|+.+||++|+...+.|.++ +-.+.+..++.+.+.. ..+.+.++... +|++++
T Consensus 21 ~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~---~~~~~~~~i~~---~Pt~~~ 80 (109)
T cd03002 21 TLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKN---KPLCGKYGVQG---FPTLKV 80 (109)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCcccc---HHHHHHcCCCc---CCEEEE
Confidence 36669999999999988777654 2223344444443211 25777788888 998843
No 133
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.84 E-value=7.5e-05 Score=49.16 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=42.2
Q ss_pred HHHHhcCC--cEEEEEcCCChhHHHHHHHHhhC----C--CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EE
Q 039295 38 VARVASES--AVVIFSVSSCCMCHAVKRLFCGM----G--VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FI 107 (139)
Q Consensus 38 ~~~~i~~~--~Vvif~~~~Cp~C~~ak~~L~~~----~--v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi 107 (139)
++++++.+ -++.|+.+||++|+.....+.+. . -.+....+|.+.+.. ..+...+|... +|++ |-
T Consensus 10 ~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~~~~~~~i~~---~Pt~~~~~ 83 (104)
T cd02997 10 FRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEH---DALKEEYNVKG---FPTFKYFE 83 (104)
T ss_pred HHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCcc---HHHHHhCCCcc---ccEEEEEe
Confidence 34444444 36679999999999887666433 2 223444445444211 25667778877 9988 55
Q ss_pred CCEEE
Q 039295 108 GGKLI 112 (139)
Q Consensus 108 ~g~~i 112 (139)
+|+.+
T Consensus 84 ~g~~~ 88 (104)
T cd02997 84 NGKFV 88 (104)
T ss_pred CCCee
Confidence 66644
No 134
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.83 E-value=4.6e-05 Score=49.85 Aligned_cols=62 Identities=13% Similarity=0.226 Sum_probs=39.9
Q ss_pred HHHHHhcCC--cEEEEEcCCChhHHHHHHHHhhC----CC--CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 37 KVARVASES--AVVIFSVSSCCMCHAVKRLFCGM----GV--NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 37 ~~~~~i~~~--~Vvif~~~~Cp~C~~ak~~L~~~----~v--~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
.+++++..+ -+++|+.+||+.|+.....|.+. .- .+.+..+|.+.. ..+.+.++... +|+++
T Consensus 5 ~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-----~~~~~~~~i~~---~P~~~ 74 (102)
T TIGR01126 5 NFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE-----KDLASRFGVSG---FPTIK 74 (102)
T ss_pred hHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch-----HHHHHhCCCCc---CCEEE
Confidence 344444444 37779999999999887777543 21 244555554433 25777788888 99883
No 135
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.83 E-value=3.8e-05 Score=53.54 Aligned_cols=65 Identities=12% Similarity=0.102 Sum_probs=38.1
Q ss_pred EEEEEc-------CCChhHHHHHHHHhh----CC--CCCeEEEecCCCChHHHHHHHHHHhCCC-CCCCccEE--EECCE
Q 039295 47 VVIFSV-------SSCCMCHAVKRLFCG----MG--VNPTVYELDHDPRGADIERVLMRLLANS-SAVPVPIV--FIGGK 110 (139)
Q Consensus 47 Vvif~~-------~~Cp~C~~ak~~L~~----~~--v~~~~~~vd~~~~~~~~~~~L~~~~g~~-~~~~vP~I--fi~g~ 110 (139)
|+.|+. +|||.|+.+...|++ +. +.+..++++..+.-.+....+....+.. . +|++ |-+|.
T Consensus 25 vV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~---iPT~~~~~~~~ 101 (119)
T cd02952 25 FILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTG---VPTLLRWKTPQ 101 (119)
T ss_pred EEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccC---CCEEEEEcCCc
Confidence 555888 899999988777754 33 4445555554321000012566666776 6 9998 33444
Q ss_pred EEec
Q 039295 111 LIGA 114 (139)
Q Consensus 111 ~iGG 114 (139)
.+-|
T Consensus 102 ~l~~ 105 (119)
T cd02952 102 RLVE 105 (119)
T ss_pred eecc
Confidence 4433
No 136
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.83 E-value=0.00025 Score=49.71 Aligned_cols=75 Identities=17% Similarity=0.313 Sum_probs=44.8
Q ss_pred HHHHHHhcCCc-EEE-EEcCCChhHHHHHH-HHhh------CCCCCeEEEecCCCCh--HH-HHHHHHHHhCCCCCCCcc
Q 039295 36 EKVARVASESA-VVI-FSVSSCCMCHAVKR-LFCG------MGVNPTVYELDHDPRG--AD-IERVLMRLLANSSAVPVP 103 (139)
Q Consensus 36 ~~~~~~i~~~~-Vvi-f~~~~Cp~C~~ak~-~L~~------~~v~~~~~~vd~~~~~--~~-~~~~L~~~~g~~~~~~vP 103 (139)
+.++++.+.++ |+| |+.+||++|+...+ .|.+ ++-.|..+.+|.+... .. ..+.....+|... +|
T Consensus 6 eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G---~P 82 (124)
T cd02955 6 EAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGG---WP 82 (124)
T ss_pred HHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC---CC
Confidence 45677777664 554 88999999998864 3433 3345666666654422 11 1222233457666 99
Q ss_pred EE-EE--CCEEEe
Q 039295 104 IV-FI--GGKLIG 113 (139)
Q Consensus 104 ~I-fi--~g~~iG 113 (139)
++ |+ +|+.+-
T Consensus 83 t~vfl~~~G~~~~ 95 (124)
T cd02955 83 LNVFLTPDLKPFF 95 (124)
T ss_pred EEEEECCCCCEEe
Confidence 88 44 577773
No 137
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.79 E-value=0.00018 Score=48.55 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=34.8
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCC-----CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMG-----VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~-----v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
-++.|+.+|||+|+...+.|.++. ..+.+..||.+.+... ...+.++... +|+++
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~---~~~~~~~v~~---~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQRE---FAKEELQLKS---FPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchh---hHHhhcCCCc---CCEEE
Confidence 466699999999999988886532 2244444554432222 2233468777 99883
No 138
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.79 E-value=0.00012 Score=48.17 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=35.6
Q ss_pred EEEEEcCCChhHHHHHHHHhhC----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGM----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV 105 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I 105 (139)
++.|+.+||+.|+..+..|.++ .-.+.+..+|.+.. ..+.+.+|... +|++
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~~~~~~i~~---~P~~ 76 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVH-----QSLAQQYGVRG---FPTI 76 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcch-----HHHHHHCCCCc---cCEE
Confidence 6668899999999998877653 22344555554432 25667778887 9987
No 139
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.78 E-value=0.0002 Score=56.42 Aligned_cols=69 Identities=22% Similarity=0.362 Sum_probs=44.6
Q ss_pred HHHHHHhcCCcEEEEEcCCChhHHHHHHHHhh----CCCCCeEEEecCCCChH----HHHHHHHHHhCCCCCCCccEEEE
Q 039295 36 EKVARVASESAVVIFSVSSCCMCHAVKRLFCG----MGVNPTVYELDHDPRGA----DIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 36 ~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~----~~v~~~~~~vd~~~~~~----~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
..++.+.....++.|+++|||+|+.....|++ +++.+..+++|...... .....+.+.+|... +|++|+
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~---vPtl~L 235 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRT---VPAVFL 235 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCCCccccCCcccCCHHHHHHcCCCc---CCeEEE
Confidence 34555555556777999999999988887764 45555566666532100 00014566779888 999844
No 140
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=97.78 E-value=7.3e-05 Score=56.09 Aligned_cols=98 Identities=13% Similarity=0.219 Sum_probs=58.8
Q ss_pred CCCCCccHHHHHHHHhcCC---cEEE-EEcCCChhHHHHHHHHhhCCCC---CeEEEecCCCChHHHHHHHHHHhCCCCC
Q 039295 27 GNMPREEPMEKVARVASES---AVVI-FSVSSCCMCHAVKRLFCGMGVN---PTVYELDHDPRGADIERVLMRLLANSSA 99 (139)
Q Consensus 27 ~~~~~~~~~~~~~~~i~~~---~Vvi-f~~~~Cp~C~~ak~~L~~~~v~---~~~~~vd~~~~~~~~~~~L~~~~g~~~~ 99 (139)
......+..+++.++.... .|+| |+.+||+.|+.+...|+++-.+ ..++.|+.+. ....++...
T Consensus 82 G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~--------~~~~~~i~~- 152 (192)
T cd02988 82 GEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQ--------CIPNYPDKN- 152 (192)
T ss_pred CeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHH--------hHhhCCCCC-
Confidence 3343445667776766543 3544 9999999999999988765322 3455555432 235568777
Q ss_pred CCccEE--EECCEEEe---ccHHHHH-HHHcCChHHHHHhcC
Q 039295 100 VPVPIV--FIGGKLIG---AMDRVMA-SHINGTLVPLLKEAG 135 (139)
Q Consensus 100 ~~vP~I--fi~g~~iG---G~~~l~~-l~~~g~L~~~L~~~g 135 (139)
+|++ |-||+.++ |+.++-. -.....|+.+|...|
T Consensus 153 --lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 153 --LPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred --CCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence 9988 67888653 3333211 012234666665554
No 141
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=97.76 E-value=0.00014 Score=50.69 Aligned_cols=69 Identities=9% Similarity=0.113 Sum_probs=44.9
Q ss_pred HHHHHHHhcCC--cEEE-EEcCCChh--HH--HH--------HHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCC
Q 039295 35 MEKVARVASES--AVVI-FSVSSCCM--CH--AV--------KRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSA 99 (139)
Q Consensus 35 ~~~~~~~i~~~--~Vvi-f~~~~Cp~--C~--~a--------k~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~ 99 (139)
...+++.+..+ .+++ |...||+. |+ .. ..+|+..++.+..+|+|.++ .|++.+|..+
T Consensus 16 ~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~-------~La~~~~I~~- 87 (120)
T cd03065 16 EKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA-------KVAKKLGLDE- 87 (120)
T ss_pred hhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH-------HHHHHcCCcc-
Confidence 45566666555 3444 55566754 98 33 33344445666666666553 6889999998
Q ss_pred CCccEE--EECCEEEe
Q 039295 100 VPVPIV--FIGGKLIG 113 (139)
Q Consensus 100 ~~vP~I--fi~g~~iG 113 (139)
+|++ |.||+.+.
T Consensus 88 --iPTl~lfk~G~~v~ 101 (120)
T cd03065 88 --EDSIYVFKDDEVIE 101 (120)
T ss_pred --ccEEEEEECCEEEE
Confidence 9998 88998664
No 142
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=97.73 E-value=0.00031 Score=43.88 Aligned_cols=70 Identities=14% Similarity=0.135 Sum_probs=53.9
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
++|+.+.+|+|.+++-+|.+.|++|+.++++..... ...+.+.+...... +|.+..+|..+.....+..+
T Consensus 2 ~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~-~~~~~~~~~nP~~~---vP~L~~~~~~l~eS~aI~~Y 71 (73)
T cd03047 2 TIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGG-LDTPEFLAMNPNGR---VPVLEDGDFVLWESNAILRY 71 (73)
T ss_pred EEEecCCCcchHHHHHHHHHcCCCCEEEEecccccc-ccCHHHHhhCCCCC---CCEEEECCEEEECHHHHHHH
Confidence 689999999999999999999999999888753221 11135666776667 99999999888776666554
No 143
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.69 E-value=0.00014 Score=47.77 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=37.7
Q ss_pred EEEEEcCCChhHHHHHHHHhhC----C--CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGM----G--VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~----~--v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
++.|+.+||++|+...+.+.+. . -.+....+|.+... ..+.+.++... +|++++
T Consensus 22 ~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~----~~~~~~~~i~~---~P~~~~ 81 (105)
T cd02998 22 LVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEAN----KDLAKKYGVSG---FPTLKF 81 (105)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcc----hhhHHhCCCCC---cCEEEE
Confidence 6679999999999888777542 2 23566666655521 25677778887 998854
No 144
>KOG4023 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=8.1e-05 Score=50.05 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=64.4
Q ss_pred cEEEEEcCCChhHH------HHHHHHhhCCCCCeEEEecCCCChHH-----HHHHHHHHhCCCCCCCccEEEECCEEEec
Q 039295 46 AVVIFSVSSCCMCH------AVKRLFCGMGVNPTVYELDHDPRGAD-----IERVLMRLLANSSAVPVPIVFIGGKLIGA 114 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~------~ak~~L~~~~v~~~~~~vd~~~~~~~-----~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG 114 (139)
.|.+|+++.-+.-. ++..+|+...+.+..+|+...++.+. +.++.+...|... -|+||-++++.|+
T Consensus 3 ~irvyvasssg~~eik~kqqevv~~Ld~~ki~fk~~di~~~e~~~~~~~~~~~~e~r~~~Gnpl---PPqifn~d~Y~Gd 79 (108)
T KOG4023|consen 3 VIRVYVASSSGSTEIKKKQQEVVRFLDANKIGFKEIDITAYEEVRQWMDNNVPDEKRPLNGNPL---PPQIFNGDQYCGD 79 (108)
T ss_pred ceEEEEecCCCchHHHhhhhhhhhhhhcccCCcceeeccchhhhHHHHHhcCChhhcCCCCCCC---CcccccCcccccc
Confidence 46777777665542 56678888899999999887765432 2334455557666 8999999999999
Q ss_pred cHHHHHHHHcCChHHHHH
Q 039295 115 MDRVMASHINGTLVPLLK 132 (139)
Q Consensus 115 ~~~l~~l~~~g~L~~~L~ 132 (139)
|+.+.+..+++.|.+.|+
T Consensus 80 ye~F~ea~E~ntl~eFL~ 97 (108)
T KOG4023|consen 80 YELFFEAVEQNTLQEFLG 97 (108)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999999886
No 145
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=97.63 E-value=0.0004 Score=43.73 Aligned_cols=70 Identities=9% Similarity=0.170 Sum_probs=52.3
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC-CEEEeccHHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG-GKLIGAMDRVMASH 122 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~-g~~iGG~~~l~~l~ 122 (139)
++|+.+.| .|.+++-+|...|++|+.+.++..... ...+++.+...... +|++..+ |..+.....+..+.
T Consensus 2 ~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~np~~~---vP~l~~~~g~~l~eS~aI~~yL 72 (77)
T cd03057 2 KLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKT-QKGADYLAINPKGQ---VPALVLDDGEVLTESAAILQYL 72 (77)
T ss_pred EEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCc-cCCHhHHHhCCCCC---CCEEEECCCcEEEcHHHHHHHH
Confidence 57888876 488999999999999999888764320 01136777777777 9999887 78887777776653
No 146
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.60 E-value=0.00025 Score=45.53 Aligned_cols=66 Identities=20% Similarity=0.329 Sum_probs=43.4
Q ss_pred cHHHHHHHHhcCCc--EEEEEcCCChhHHHHHHHHhh-------CCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCcc
Q 039295 33 EPMEKVARVASESA--VVIFSVSSCCMCHAVKRLFCG-------MGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVP 103 (139)
Q Consensus 33 ~~~~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~-------~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP 103 (139)
+..+.+.++.+.++ ++.|+.+||++|+..++.+-+ +.-.|..+.||.+...... ...+ .. +|
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~-----~~~~-~~---~P 75 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA-----QFDR-QG---YP 75 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH-----HHHH-CS---SS
T ss_pred hHHHHHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH-----HhCC-cc---CC
Confidence 45667777776664 555899999999998777632 3445888888876544331 1112 33 89
Q ss_pred EEEE
Q 039295 104 IVFI 107 (139)
Q Consensus 104 ~Ifi 107 (139)
++++
T Consensus 76 ~~~~ 79 (82)
T PF13899_consen 76 TFFF 79 (82)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8865
No 147
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.58 E-value=0.0001 Score=52.84 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=43.7
Q ss_pred cHHHHHHHHhc---CCcEEE-EEcCCChhHHHHHHHHhhCCCC----CeEEEecCCCChHHHHHHHHHHhCCCCCCCccE
Q 039295 33 EPMEKVARVAS---ESAVVI-FSVSSCCMCHAVKRLFCGMGVN----PTVYELDHDPRGADIERVLMRLLANSSAVPVPI 104 (139)
Q Consensus 33 ~~~~~~~~~i~---~~~Vvi-f~~~~Cp~C~~ak~~L~~~~v~----~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~ 104 (139)
...+.+++++. ...|+| |+++||+.|+...+.|.++.-+ ..++.||.+.. ..+...++... ..|+
T Consensus 9 ~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~-----~dla~~y~I~~--~~t~ 81 (142)
T PLN00410 9 HSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEV-----PDFNTMYELYD--PCTV 81 (142)
T ss_pred CCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCC-----HHHHHHcCccC--CCcE
Confidence 33555566553 223444 9999999999999998875422 23344444433 25888888885 1456
Q ss_pred E-EE-CCE
Q 039295 105 V-FI-GGK 110 (139)
Q Consensus 105 I-fi-~g~ 110 (139)
+ |. +|+
T Consensus 82 ~~ffk~g~ 89 (142)
T PLN00410 82 MFFFRNKH 89 (142)
T ss_pred EEEEECCe
Confidence 5 33 565
No 148
>PRK15113 glutathione S-transferase; Provisional
Probab=97.57 E-value=0.00059 Score=51.22 Aligned_cols=74 Identities=9% Similarity=0.050 Sum_probs=56.8
Q ss_pred CcEEEEEcC--CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 45 SAVVIFSVS--SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 45 ~~Vvif~~~--~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
..+++|+.+ .||+|.++.-+|.+.|++|+.+.++..... ...+++.+.+-... ||++..||..+-....+..+.
T Consensus 4 ~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~-~~~~~~~~~nP~g~---VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 4 PAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGE-HLQPTYQGYSLTRR---VPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCcc-ccCHHHHhcCCCCC---CCEEEECCEEEecHHHHHHHH
Confidence 458899975 799999999999999999999988864321 11135667776667 999999998887777666653
No 149
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=97.57 E-value=0.00082 Score=51.98 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=53.7
Q ss_pred CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHH
Q 039295 53 SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 53 ~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~ 123 (139)
..||+|++++-+|...|++|+.+.||..... +.+.++..... +|++..+|..+.....|..+..
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~----~~fl~inP~g~---vPvL~~~g~~l~ES~aI~eYL~ 80 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLKRKP----EDLQNLAPGTH---PPFLTYNTEVKTDVNKIEEFLE 80 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCCCCC----HHHHHHCcCCC---CCEEEECCEEeecHHHHHHHHH
Confidence 4799999999999999999999999876432 25777777777 9999999999998888888755
No 150
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.56 E-value=0.00039 Score=47.58 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=39.9
Q ss_pred HHHHHhcCC---cEEEEEcCCChhHHHHHHHHhhCCC-------CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 37 KVARVASES---AVVIFSVSSCCMCHAVKRLFCGMGV-------NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 37 ~~~~~i~~~---~Vvif~~~~Cp~C~~ak~~L~~~~v-------~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
.+++.+..+ -++.|+.+||+.|+.....|++..- .+.+..+|.+.+.. ..+.+.++... +|+++
T Consensus 10 ~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~---~~~~~~~~i~~---~Pt~~ 83 (114)
T cd02992 10 SFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEEN---VALCRDFGVTG---YPTLR 83 (114)
T ss_pred hHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhh---HHHHHhCCCCC---CCEEE
Confidence 445554443 3555999999999988888765322 13344455332211 25677778887 99884
Q ss_pred E
Q 039295 107 I 107 (139)
Q Consensus 107 i 107 (139)
+
T Consensus 84 l 84 (114)
T cd02992 84 Y 84 (114)
T ss_pred E
Confidence 3
No 151
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=97.55 E-value=0.00087 Score=42.12 Aligned_cols=65 Identities=9% Similarity=0.046 Sum_probs=50.8
Q ss_pred cCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 52 VSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 52 ~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
...||+|.+++-+|...|++|+.+.++...... .+++.+...... +|++..+|..+.....+..+
T Consensus 7 ~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~--~~~~~~~nP~g~---vP~L~~~g~~l~eS~aI~~Y 71 (73)
T cd03043 7 KNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDT--RARILEFSPTGK---VPVLVDGGIVVWDSLAICEY 71 (73)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccc--cHHHHhhCCCCc---CCEEEECCEEEEcHHHHHHH
Confidence 467999999999999999999999887643211 135677776777 99999999988877776654
No 152
>PTZ00062 glutaredoxin; Provisional
Probab=97.52 E-value=0.00035 Score=52.96 Aligned_cols=67 Identities=12% Similarity=0.152 Sum_probs=46.4
Q ss_pred HHHHHHHHhc--CCc-EEEEEcCCChhHHHHHHHHhhCCC---CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--
Q 039295 34 PMEKVARVAS--ESA-VVIFSVSSCCMCHAVKRLFCGMGV---NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV-- 105 (139)
Q Consensus 34 ~~~~~~~~i~--~~~-Vvif~~~~Cp~C~~ak~~L~~~~v---~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I-- 105 (139)
..+.+.++++ ... |..|+.+|||.|+....+|.++-- .+.++.|+.+ ++... +|++
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------------~~V~~---vPtfv~ 68 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------------DANNE---YGVFEF 68 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------------cCccc---ceEEEE
Confidence 3455666776 344 455669999999999999987643 3566677644 57777 9977
Q ss_pred EECCEEEeccH
Q 039295 106 FIGGKLIGAMD 116 (139)
Q Consensus 106 fi~g~~iGG~~ 116 (139)
|-||+.++.+.
T Consensus 69 ~~~g~~i~r~~ 79 (204)
T PTZ00062 69 YQNSQLINSLE 79 (204)
T ss_pred EECCEEEeeee
Confidence 56888775443
No 153
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.52 E-value=0.00041 Score=51.70 Aligned_cols=62 Identities=23% Similarity=0.418 Sum_probs=38.5
Q ss_pred cEEEEEcCCChhHHHHHHHH----hhCCCCCeEEEecCCCC-----hH-HHHHHHHHHhCC--CCCCCccEEEE---CCE
Q 039295 46 AVVIFSVSSCCMCHAVKRLF----CGMGVNPTVYELDHDPR-----GA-DIERVLMRLLAN--SSAVPVPIVFI---GGK 110 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L----~~~~v~~~~~~vd~~~~-----~~-~~~~~L~~~~g~--~~~~~vP~Ifi---~g~ 110 (139)
++++|+.+|||+|++....| +++++.+.-+.+|...+ .. .-...+...+|. .. +|+.|+ +|+
T Consensus 72 ~lV~FwaswCp~C~~e~P~L~~l~~~~g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~---iPttfLId~~G~ 148 (181)
T PRK13728 72 KVVLFMQGHCPYCHQFDPVLKQLAQQYGFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVA---TPTTFLVNVNTL 148 (181)
T ss_pred eEEEEECCCCHhHHHHHHHHHHHHHHcCCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCC---CCeEEEEeCCCc
Confidence 38899999999999875554 45676666666664420 00 001245556673 35 998865 564
No 154
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=97.50 E-value=0.001 Score=41.40 Aligned_cols=71 Identities=10% Similarity=0.188 Sum_probs=52.9
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~ 123 (139)
++|+.+. +.|.+++-+|...|++|+.+.++..... ...+.+.+...... +|++..+|..+.....+..+..
T Consensus 2 ~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~-~~~~~~~~~~p~~~---vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 2 TLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGE-QAPPEYLAINPLGK---VPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred EEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCc-cCCHHHHhcCCCCC---CCEEEECCEEEEcHHHHHHHHH
Confidence 5777665 6789999999999999999988753111 01125666666666 9999999999988888777643
No 155
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.49 E-value=0.00043 Score=52.81 Aligned_cols=72 Identities=17% Similarity=0.296 Sum_probs=51.3
Q ss_pred ccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHh----hCCCCCeEEEecCCC-----ChHHHHHHHHHHhCCCCCCCc
Q 039295 32 EEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFC----GMGVNPTVYELDHDP-----RGADIERVLMRLLANSSAVPV 102 (139)
Q Consensus 32 ~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~----~~~v~~~~~~vd~~~-----~~~~~~~~L~~~~g~~~~~~v 102 (139)
......++++.+...+++|.+++||+|+....+|+ ++|++...+.+|... +.. .-..+.+..|... +
T Consensus 109 ~~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~-~~~g~~~~l~v~~---~ 184 (215)
T PF13728_consen 109 QKRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPR-PDPGQAKRLGVKV---T 184 (215)
T ss_pred HHHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCC-CCHHHHHHcCCCc---C
Confidence 34556667777777899999999999998877775 567877788887431 100 0124666778888 9
Q ss_pred cEEEE
Q 039295 103 PIVFI 107 (139)
Q Consensus 103 P~Ifi 107 (139)
|.+|+
T Consensus 185 Pal~L 189 (215)
T PF13728_consen 185 PALFL 189 (215)
T ss_pred CEEEE
Confidence 99976
No 156
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.48 E-value=0.00073 Score=48.95 Aligned_cols=39 Identities=26% Similarity=0.516 Sum_probs=28.8
Q ss_pred hcCCcEEEEEcCCChhHHHHHHHHhh----CCCCCeEEEecCC
Q 039295 42 ASESAVVIFSVSSCCMCHAVKRLFCG----MGVNPTVYELDHD 80 (139)
Q Consensus 42 i~~~~Vvif~~~~Cp~C~~ak~~L~~----~~v~~~~~~vd~~ 80 (139)
.....++.|+.+|||+|++....|.+ +++.+..+++|..
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFGLPVYAFSLDGQ 91 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 34556889999999999988888864 4555556666653
No 157
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.47 E-value=0.00033 Score=53.79 Aligned_cols=59 Identities=22% Similarity=0.296 Sum_probs=41.6
Q ss_pred cEEEEEcCCChhHHHHHHHHhhC----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEE
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGM----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLI 112 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~i 112 (139)
-++.|+.+||++|+...+.++++ +-...+..+|.+.. ..+.+.++... +|++ |-+|+.+
T Consensus 55 vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~-----~~l~~~~~I~~---~PTl~~f~~G~~v 119 (224)
T PTZ00443 55 WFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRA-----LNLAKRFAIKG---YPTLLLFDKGKMY 119 (224)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCccc-----HHHHHHcCCCc---CCEEEEEECCEEE
Confidence 36669999999999999888654 22234445554433 25777889888 9988 5688766
No 158
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.44 E-value=0.001 Score=49.48 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHhh
Q 039295 44 ESAVVIFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 44 ~~~Vvif~~~~Cp~C~~ak~~L~~ 67 (139)
...|++|+.+.||||+++...+.+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh
Confidence 346889999999999999999874
No 159
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=97.40 E-value=0.0004 Score=47.25 Aligned_cols=46 Identities=15% Similarity=0.369 Sum_probs=30.9
Q ss_pred EEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhC
Q 039295 50 FSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLA 95 (139)
Q Consensus 50 f~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g 95 (139)
|+.+.|.-|++|.++|++.|++|.++|+...+-..+-...+.+..|
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLG 46 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhc
Confidence 7899999999999999999999999999876544443334444445
No 160
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.40 E-value=3e-05 Score=54.71 Aligned_cols=78 Identities=15% Similarity=0.340 Sum_probs=40.0
Q ss_pred CccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhC-----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE
Q 039295 31 REEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGM-----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV 105 (139)
Q Consensus 31 ~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~-----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I 105 (139)
+.+..+++..+.+.-.|++++.+|||+|...-++|... ++++.++..|.+++ +.+.+.. .|... +|++
T Consensus 29 ~~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~e---l~~~~lt-~g~~~---IP~~ 101 (129)
T PF14595_consen 29 SEEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKE---LMDQYLT-NGGRS---IPTF 101 (129)
T ss_dssp -HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHH---HTTTTTT--SS-----SSEE
T ss_pred CHHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChh---HHHHHHh-CCCee---cCEE
Confidence 44556677777777789999999999999887777543 45555555554432 1111111 35555 9998
Q ss_pred E-E--CCEEEecc
Q 039295 106 F-I--GGKLIGAM 115 (139)
Q Consensus 106 f-i--~g~~iGG~ 115 (139)
+ . +|+.+|-+
T Consensus 102 I~~d~~~~~lg~w 114 (129)
T PF14595_consen 102 IFLDKDGKELGRW 114 (129)
T ss_dssp EEE-TT--EEEEE
T ss_pred EEEcCCCCEeEEE
Confidence 4 4 34555433
No 161
>PLN02473 glutathione S-transferase
Probab=97.29 E-value=0.0021 Score=47.88 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=55.3
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
+++|+.+.||+|.+++-+|.++|++|+.+.++...... ...++..++.... +|++..||..+.....+..+.
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~-~~~~~~~~nP~g~---vP~L~~~g~~l~ES~aI~~YL 74 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQ-KKPEHLLRQPFGQ---VPAIEDGDLKLFESRAIARYY 74 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCCceEEEecCccccc-CCHHHHhhCCCCC---CCeEEECCEEEEehHHHHHHH
Confidence 67899999999999999999999999998887542100 0124445666666 999999999888888777754
No 162
>PLN02378 glutathione S-transferase DHAR1
Probab=97.27 E-value=0.0016 Score=48.97 Aligned_cols=64 Identities=9% Similarity=0.165 Sum_probs=50.7
Q ss_pred CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHH
Q 039295 53 SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 53 ~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~ 123 (139)
..||+|.++.-+|.+.|++|+.+.||..... +.+.+.+.... ||++..||..+.....+..+..
T Consensus 18 ~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~----~~~l~inP~G~---VPvL~~~~~~l~ES~aI~~YL~ 81 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSLTYKIHLINLSDKP----QWFLDISPQGK---VPVLKIDDKWVTDSDVIVGILE 81 (213)
T ss_pred CCCcchHHHHHHHHHcCCCCeEEEeCcccCC----HHHHHhCCCCC---CCEEEECCEEecCHHHHHHHHH
Confidence 4599999999999999999999888875332 24667777777 9999999988877777666543
No 163
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=97.24 E-value=0.00079 Score=49.93 Aligned_cols=71 Identities=13% Similarity=0.142 Sum_probs=54.0
Q ss_pred EEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 49 IFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 49 if~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
+|+...||+|.+++-+|.+.|++|+.+.++.........+++.+.+.... +|++..||..+.....+..+.
T Consensus 2 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~---vP~L~~~g~~l~ES~aI~~yl 72 (210)
T TIGR01262 2 LYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGL---VPTLDIDGEVLTQSLAIIEYL 72 (210)
T ss_pred cccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCc---CCEEEECCEEeecHHHHHHHH
Confidence 68888999999999999999999999888742110011135666666666 999999999888888777654
No 164
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=97.23 E-value=0.0015 Score=51.32 Aligned_cols=80 Identities=13% Similarity=0.152 Sum_probs=56.7
Q ss_pred ccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEE
Q 039295 32 EEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKL 111 (139)
Q Consensus 32 ~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~ 111 (139)
...+-.++... ...+. .-.||+|.++.-+|.++|++|+.+.|+..... +.+.+++-... +|++..+|..
T Consensus 54 ~~~~~~~~~~~-~~~~~---~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~----~~fl~iNP~Gk---VPvL~~d~~~ 122 (265)
T PLN02817 54 SPLEVCVKASL-TVPNK---LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKP----EWFLKISPEGK---VPVVKLDEKW 122 (265)
T ss_pred ccHHHHHhccc-CCCCc---CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCC----HHHHhhCCCCC---CCEEEECCEE
Confidence 33455555443 22333 34599999999999999999999888765432 24566666666 9999999988
Q ss_pred EeccHHHHHHH
Q 039295 112 IGAMDRVMASH 122 (139)
Q Consensus 112 iGG~~~l~~l~ 122 (139)
+.....+..+.
T Consensus 123 L~ES~aI~~YL 133 (265)
T PLN02817 123 VADSDVITQAL 133 (265)
T ss_pred EecHHHHHHHH
Confidence 87777766654
No 165
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.22 E-value=0.0011 Score=43.44 Aligned_cols=52 Identities=15% Similarity=0.331 Sum_probs=33.4
Q ss_pred EEEEEcCCChhHHHHHHHHhhCC------CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMG------VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~------v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
++.|+.+||++|+.....|++.. ..+....+|.+.. .+....+... +|++++
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~------~~~~~~~~~~---~Pt~~~ 79 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN------DVPSEFVVDG---FPTILF 79 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch------hhhhhccCCC---CCEEEE
Confidence 56699999999999888876542 1244555554432 2344456566 998843
No 166
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.17 E-value=0.0053 Score=42.57 Aligned_cols=71 Identities=13% Similarity=0.077 Sum_probs=47.4
Q ss_pred HHHHHHHhcCCc--EEEEEc--CCCh---hHHHHHHHHhhCC--CCCeEEEecCCCChHHHHHHHHHHhCCC--CCCCcc
Q 039295 35 MEKVARVASESA--VVIFSV--SSCC---MCHAVKRLFCGMG--VNPTVYELDHDPRGADIERVLMRLLANS--SAVPVP 103 (139)
Q Consensus 35 ~~~~~~~i~~~~--Vvif~~--~~Cp---~C~~ak~~L~~~~--v~~~~~~vd~~~~~~~~~~~L~~~~g~~--~~~~vP 103 (139)
...+.+.++.++ +|.|.. |||. +|.++-.-+.... +.+-.+|++...+..+ ..|.+.+|.. . +|
T Consensus 8 ~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~--~~L~~~y~I~~~g---yP 82 (116)
T cd03007 8 TVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDDLLVAEVGIKDYGEKLN--MELGERYKLDKES---YP 82 (116)
T ss_pred hhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCceEEEEEecccccchhh--HHHHHHhCCCcCC---CC
Confidence 345666777775 455999 8999 8888876665433 4455555544333222 4799999998 7 99
Q ss_pred EE--EECCE
Q 039295 104 IV--FIGGK 110 (139)
Q Consensus 104 ~I--fi~g~ 110 (139)
+| |.+|.
T Consensus 83 Tl~lF~~g~ 91 (116)
T cd03007 83 VIYLFHGGD 91 (116)
T ss_pred EEEEEeCCC
Confidence 88 77774
No 167
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=97.16 E-value=0.0035 Score=43.21 Aligned_cols=62 Identities=21% Similarity=0.364 Sum_probs=37.3
Q ss_pred cEEEEEcCCChhHHHHHHHHhhC---------CCCCeEEEecCCCChHHH-------------------HHHHHHHhCCC
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGM---------GVNPTVYELDHDPRGADI-------------------ERVLMRLLANS 97 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~---------~v~~~~~~vd~~~~~~~~-------------------~~~L~~~~g~~ 97 (139)
-++.|+.+|||.|++....|.++ ++.+..+.+|.. ...+ ...+.+.+|..
T Consensus 21 vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 98 (131)
T cd03009 21 VGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRD--EESFNDYFSKMPWLAVPFSDRERRSRLNRTFKIE 98 (131)
T ss_pred EEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCC--HHHHHHHHHcCCeeEcccCCHHHHHHHHHHcCCC
Confidence 35558899999999877766532 233334444433 2211 23566677887
Q ss_pred CCCCccEEEE---CCEEE
Q 039295 98 SAVPVPIVFI---GGKLI 112 (139)
Q Consensus 98 ~~~~vP~Ifi---~g~~i 112 (139)
. +|++|+ +|+.+
T Consensus 99 ~---~P~~~lid~~G~i~ 113 (131)
T cd03009 99 G---IPTLIILDADGEVV 113 (131)
T ss_pred C---CCEEEEECCCCCEE
Confidence 7 998854 46544
No 168
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=97.14 E-value=0.0035 Score=46.28 Aligned_cols=34 Identities=12% Similarity=0.226 Sum_probs=22.5
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCC-CCeEEEecC
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGV-NPTVYELDH 79 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v-~~~~~~vd~ 79 (139)
-|+.|+.+|||+|++....|.++.- .+.++-|+.
T Consensus 71 vvv~FwatwC~~C~~e~p~l~~l~~~~~~vi~v~~ 105 (185)
T PRK15412 71 VLLNVWATWCPTCRAEHQYLNQLSAQGIRVVGMNY 105 (185)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHcCCEEEEEEC
Confidence 3555999999999988877765521 234444443
No 169
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0042 Score=47.95 Aligned_cols=73 Identities=15% Similarity=0.100 Sum_probs=58.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHh-CCCCCCCccEEEECCEEEeccHHHHHHHH
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLL-ANSSAVPVPIVFIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~-g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~ 123 (139)
..|.+|+.-.|||..+++-.|+..||+|+++++|-.... + -|.+.. =... ||++.-||+.|+-.-.+.++.+
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks-~---~ll~~np~hkK---VPvL~Hn~k~i~ESliiveYiD 80 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKS-E---WLLEKNPVHKK---VPVLEHNGKPICESLIIVEYID 80 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCC-H---HHHHhcccccc---CCEEEECCceehhhHHHHHHHH
Confidence 569999999999999999999999999999998875322 1 355554 3445 9999999999988777777654
Q ss_pred c
Q 039295 124 N 124 (139)
Q Consensus 124 ~ 124 (139)
+
T Consensus 81 e 81 (231)
T KOG0406|consen 81 E 81 (231)
T ss_pred h
Confidence 3
No 170
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=97.08 E-value=0.0021 Score=55.49 Aligned_cols=72 Identities=15% Similarity=0.386 Sum_probs=41.1
Q ss_pred HHHHHHHhcCC-cEE-EEEcCCChhHHHHHHH-Hh------hCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE
Q 039295 35 MEKVARVASES-AVV-IFSVSSCCMCHAVKRL-FC------GMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV 105 (139)
Q Consensus 35 ~~~~~~~i~~~-~Vv-if~~~~Cp~C~~ak~~-L~------~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I 105 (139)
++.+++....+ +|+ -|+.+||++|+..++. +. .++ .+..+.+|.+.+..+ ..++.+.+|... +|++
T Consensus 464 ~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~-~~~~v~vDvt~~~~~-~~~l~~~~~v~g---~Pt~ 538 (571)
T PRK00293 464 DQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA-DTVLLQADVTANNAE-DVALLKHYNVLG---LPTI 538 (571)
T ss_pred HHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc-CCEEEEEECCCCChh-hHHHHHHcCCCC---CCEE
Confidence 34444444333 344 4999999999987654 22 222 344544444332211 135777788887 9998
Q ss_pred -EE--CCEE
Q 039295 106 -FI--GGKL 111 (139)
Q Consensus 106 -fi--~g~~ 111 (139)
|+ ||+.
T Consensus 539 ~~~~~~G~~ 547 (571)
T PRK00293 539 LFFDAQGQE 547 (571)
T ss_pred EEECCCCCC
Confidence 44 4654
No 171
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=97.06 E-value=0.0028 Score=44.02 Aligned_cols=63 Identities=16% Similarity=0.347 Sum_probs=36.9
Q ss_pred EEEEEcCCChhHHHHHHHHhhC---------CCCCeEEEecCCCCh------------------HHHHHHHHHHhCCCCC
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGM---------GVNPTVYELDHDPRG------------------ADIERVLMRLLANSSA 99 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~---------~v~~~~~~vd~~~~~------------------~~~~~~L~~~~g~~~~ 99 (139)
++.|+.+|||.|+.....|.++ ++.+..+.+|..++. ......+.+.+|...
T Consensus 21 ll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~v~~- 99 (132)
T cd02964 21 GLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQFKVEG- 99 (132)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHcCCCC-
Confidence 4558899999999877666432 233334444443210 011235666677777
Q ss_pred CCccEEE-EC--CEEE
Q 039295 100 VPVPIVF-IG--GKLI 112 (139)
Q Consensus 100 ~~vP~If-i~--g~~i 112 (139)
+|+++ || |+.+
T Consensus 100 --iPt~~lid~~G~iv 113 (132)
T cd02964 100 --IPTLVVLKPDGDVV 113 (132)
T ss_pred --CCEEEEECCCCCEE
Confidence 99986 54 6655
No 172
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.05 E-value=0.0026 Score=49.82 Aligned_cols=73 Identities=8% Similarity=0.151 Sum_probs=52.1
Q ss_pred ccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHH----hhCCCCCeEEEecCCCChH----HHHHHHHHHhCCCCCCCcc
Q 039295 32 EEPMEKVARVASESAVVIFSVSSCCMCHAVKRLF----CGMGVNPTVYELDHDPRGA----DIERVLMRLLANSSAVPVP 103 (139)
Q Consensus 32 ~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L----~~~~v~~~~~~vd~~~~~~----~~~~~L~~~~g~~~~~~vP 103 (139)
....+.++.+.+...+++|.++.||+|++.-..| +++|++...+.+|...... ..-..+.+..|... +|
T Consensus 139 ~~~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~---~P 215 (256)
T TIGR02739 139 EQKEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKY---FP 215 (256)
T ss_pred HHHHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCcc---Cc
Confidence 3455667777788899999999999999877666 4678888888887652110 00023566678888 99
Q ss_pred EEEE
Q 039295 104 IVFI 107 (139)
Q Consensus 104 ~Ifi 107 (139)
.+|+
T Consensus 216 al~L 219 (256)
T TIGR02739 216 ALYL 219 (256)
T ss_pred eEEE
Confidence 9976
No 173
>PTZ00102 disulphide isomerase; Provisional
Probab=97.02 E-value=0.0021 Score=53.41 Aligned_cols=69 Identities=14% Similarity=0.212 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCc--EEEEEcCCChhHHHHHHHHhh-------CCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE
Q 039295 35 MEKVARVASESA--VVIFSVSSCCMCHAVKRLFCG-------MGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV 105 (139)
Q Consensus 35 ~~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~-------~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I 105 (139)
...+++++..++ ++.|+.+||++|++..+.+.+ .+.++....||-..+. .+.+.+|... +|++
T Consensus 39 ~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~-----~l~~~~~i~~---~Pt~ 110 (477)
T PTZ00102 39 DSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM-----ELAQEFGVRG---YPTI 110 (477)
T ss_pred hhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH-----HHHHhcCCCc---ccEE
Confidence 345566665553 666999999999988765543 2333455555544432 5777888887 9988
Q ss_pred --EECCEE
Q 039295 106 --FIGGKL 111 (139)
Q Consensus 106 --fi~g~~ 111 (139)
|-+|..
T Consensus 111 ~~~~~g~~ 118 (477)
T PTZ00102 111 KFFNKGNP 118 (477)
T ss_pred EEEECCce
Confidence 445553
No 174
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.01 E-value=0.0031 Score=40.11 Aligned_cols=61 Identities=18% Similarity=0.240 Sum_probs=38.8
Q ss_pred EEEEEcCCChhHHHHHHHHhhC------CCCCeEEEecCCCC--------------------hHHHHH-----HHHHHhC
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGM------GVNPTVYELDHDPR--------------------GADIER-----VLMRLLA 95 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~------~v~~~~~~vd~~~~--------------------~~~~~~-----~L~~~~g 95 (139)
|++|+...||+|..+.+.|.+. ++.+..+.+..... ..++.+ .+....|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 5789999999999998888764 24445554443332 111211 2233446
Q ss_pred CCCCCCccEEEECCE
Q 039295 96 NSSAVPVPIVFIGGK 110 (139)
Q Consensus 96 ~~~~~~vP~Ifi~g~ 110 (139)
... +|+++++|.
T Consensus 81 ~~g---~Pt~v~~~~ 92 (98)
T cd02972 81 VTG---TPTFVVNGE 92 (98)
T ss_pred CCC---CCEEEECCE
Confidence 666 999999993
No 175
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=96.98 E-value=0.004 Score=42.61 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=18.6
Q ss_pred cEEEEEcCCChhHHHHHHHHhhC
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGM 68 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~ 68 (139)
-|+.|+.+|||.|......|.++
T Consensus 28 vvv~F~a~~C~~C~~~~~~l~~l 50 (127)
T cd03010 28 YLLNVWASWCAPCREEHPVLMAL 50 (127)
T ss_pred EEEEEEcCcCHHHHHHHHHHHHH
Confidence 46669999999999887777654
No 176
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.97 E-value=0.0046 Score=50.81 Aligned_cols=69 Identities=16% Similarity=0.254 Sum_probs=46.5
Q ss_pred HHHHHHHhcCCc--EEEEEcCCChhHHHHHHHHhh-------CCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE
Q 039295 35 MEKVARVASESA--VVIFSVSSCCMCHAVKRLFCG-------MGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV 105 (139)
Q Consensus 35 ~~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~-------~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I 105 (139)
.+.++.+++.++ ++.|+++||++|+.....+.+ .+-.+....||.+.. .++.+.+|... +|++
T Consensus 8 ~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-----~~l~~~~~i~~---~Pt~ 79 (462)
T TIGR01130 8 KDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-----KDLAQKYGVSG---YPTL 79 (462)
T ss_pred HHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-----HHHHHhCCCcc---ccEE
Confidence 345666676665 566999999999988776653 232245555555443 25777889888 9988
Q ss_pred --EECCEE
Q 039295 106 --FIGGKL 111 (139)
Q Consensus 106 --fi~g~~ 111 (139)
|-+|+.
T Consensus 80 ~~~~~g~~ 87 (462)
T TIGR01130 80 KIFRNGED 87 (462)
T ss_pred EEEeCCcc
Confidence 556664
No 177
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.92 E-value=0.0051 Score=52.02 Aligned_cols=67 Identities=18% Similarity=0.364 Sum_probs=42.1
Q ss_pred HHHHHHhc---CC-c-EEEEEcCCChhHHHHHHHHhhCC-------CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCcc
Q 039295 36 EKVARVAS---ES-A-VVIFSVSSCCMCHAVKRLFCGMG-------VNPTVYELDHDPRGADIERVLMRLLANSSAVPVP 103 (139)
Q Consensus 36 ~~~~~~i~---~~-~-Vvif~~~~Cp~C~~ak~~L~~~~-------v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP 103 (139)
+.++..++ .+ . ++.|+.+||++|+.....|+++. +.+..+++|.++. + ...+.++... +|
T Consensus 359 ~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~--~---~~~~~~~I~~---~P 430 (463)
T TIGR00424 359 PGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK--E---FAKQELQLGS---FP 430 (463)
T ss_pred HHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc--H---HHHHHcCCCc---cc
Confidence 34555553 33 2 55599999999999998886542 3344455554432 1 2345678887 99
Q ss_pred EE--EECCE
Q 039295 104 IV--FIGGK 110 (139)
Q Consensus 104 ~I--fi~g~ 110 (139)
+| |.+|.
T Consensus 431 Tii~Fk~g~ 439 (463)
T TIGR00424 431 TILFFPKHS 439 (463)
T ss_pred eEEEEECCC
Confidence 88 55663
No 178
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=96.92 E-value=0.0093 Score=42.90 Aligned_cols=21 Identities=10% Similarity=0.218 Sum_probs=17.4
Q ss_pred EEEEEcCCChhHHHHHHHHhh
Q 039295 47 VVIFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~ 67 (139)
++-|+++|||.|++..+.|.+
T Consensus 29 lL~FwAsWCppCr~e~P~L~~ 49 (146)
T cd03008 29 LLFFGAVVSPQCQLFAPKLKD 49 (146)
T ss_pred EEEEECCCChhHHHHHHHHHH
Confidence 344899999999999888865
No 179
>PLN02309 5'-adenylylsulfate reductase
Probab=96.90 E-value=0.0055 Score=51.71 Aligned_cols=57 Identities=18% Similarity=0.292 Sum_probs=36.8
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCC-----CCCeEEEecCCCChHHHHHHHH-HHhCCCCCCCccEE--EECC
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMG-----VNPTVYELDHDPRGADIERVLM-RLLANSSAVPVPIV--FIGG 109 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~-----v~~~~~~vd~~~~~~~~~~~L~-~~~g~~~~~~vP~I--fi~g 109 (139)
-++.|+.+||++|+..+..|.++. ..+.+..+|.+.+.. .+. +.++... +|+| |.+|
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~----~la~~~~~I~~---~PTil~f~~g 432 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK----EFAKQELQLGS---FPTILLFPKN 432 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch----HHHHhhCCCce---eeEEEEEeCC
Confidence 366799999999999988886542 224445555442211 344 3578887 9998 4455
No 180
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=96.89 E-value=0.0043 Score=42.09 Aligned_cols=74 Identities=16% Similarity=0.248 Sum_probs=47.5
Q ss_pred ccHHHHHHHHhcCCc-E-EEEEcCCChhHHHHHH-HHhhCC------CCCeEEEecCCC-ChHHHHHHHHHHhCCCCCCC
Q 039295 32 EEPMEKVARVASESA-V-VIFSVSSCCMCHAVKR-LFCGMG------VNPTVYELDHDP-RGADIERVLMRLLANSSAVP 101 (139)
Q Consensus 32 ~~~~~~~~~~i~~~~-V-vif~~~~Cp~C~~ak~-~L~~~~------v~~~~~~vd~~~-~~~~~~~~L~~~~g~~~~~~ 101 (139)
.+..+.++.+.+.++ + +.+..+||++|+...+ .|.+-. -.|..+.+|... ++. .+...++...
T Consensus 4 gs~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~----~~~~~~~~~~--- 76 (114)
T cd02958 4 GSFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQ----RFLQSYKVDK--- 76 (114)
T ss_pred CCHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHH----HHHHHhCccC---
Confidence 456777888777765 3 3477899999998643 554332 235555555543 332 5777788887
Q ss_pred ccEE-EE---CCEEE
Q 039295 102 VPIV-FI---GGKLI 112 (139)
Q Consensus 102 vP~I-fi---~g~~i 112 (139)
+|++ |+ +|+.+
T Consensus 77 ~P~~~~i~~~~g~~l 91 (114)
T cd02958 77 YPHIAIIDPRTGEVL 91 (114)
T ss_pred CCeEEEEeCccCcEe
Confidence 9988 55 45544
No 181
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=96.89 E-value=0.0056 Score=39.02 Aligned_cols=68 Identities=16% Similarity=0.157 Sum_probs=49.0
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHH--HhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMR--LLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~--~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
.++|..+.++.|.+++-+|.+.|++|+.+.++..++-. ++.. ...... +|++.+||..+.....+..+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~~~~~----~~~~~~~~~~g~---vP~L~~~g~~l~ES~AI~~Y 71 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESAEDLE----KLKKDGSLMFQQ---VPMVEIDGMKLVQTRAILNY 71 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccHHHHH----hhccccCCCCCC---CCEEEECCEEEeeHHHHHHH
Confidence 47888899999999999999999999998887532101 1111 011334 99999999888777766655
No 182
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0029 Score=49.40 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=47.5
Q ss_pred HHHHHHHHhcCC--c-EEEEEcCCChhHHHHHHHHhhCCCCC---eEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--
Q 039295 34 PMEKVARVASES--A-VVIFSVSSCCMCHAVKRLFCGMGVNP---TVYELDHDPRGADIERVLMRLLANSSAVPVPIV-- 105 (139)
Q Consensus 34 ~~~~~~~~i~~~--~-Vvif~~~~Cp~C~~ak~~L~~~~v~~---~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I-- 105 (139)
..++.+++...+ - ||=|+.+||..|+++-.+|..+.-+| .+..||.++.. ..+.-+|... .|++
T Consensus 9 d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~-----~taa~~gV~a---mPTFif 80 (288)
T KOG0908|consen 9 DSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECR-----GTAATNGVNA---MPTFIF 80 (288)
T ss_pred cHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhh-----chhhhcCccc---CceEEE
Confidence 344555555444 2 34499999999999999998875443 44455544321 2445568888 9987
Q ss_pred EECCEEE
Q 039295 106 FIGGKLI 112 (139)
Q Consensus 106 fi~g~~i 112 (139)
|.||..|
T Consensus 81 f~ng~ki 87 (288)
T KOG0908|consen 81 FRNGVKI 87 (288)
T ss_pred EecCeEe
Confidence 8899876
No 183
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.83 E-value=0.0039 Score=46.44 Aligned_cols=71 Identities=10% Similarity=0.121 Sum_probs=55.4
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCE-EEeccHHHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGK-LIGAMDRVMASHI 123 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~-~iGG~~~l~~l~~ 123 (139)
++|+.+.+|+|.++.-+|.++|++|+.+.|+.... ...+.+...+.... ||++..+|- .+-....|..+..
T Consensus 2 ~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~--~~~~~~~~~nP~gk---VPvL~~~~~~~l~ES~AI~~YL~ 73 (211)
T COG0625 2 KLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAE--QKPPDFLALNPLGK---VPALVDDDGEVLTESGAILEYLA 73 (211)
T ss_pred eeecCCCCcchHHHHHHHHHcCCCceEEEeCcccc--cCCHHHHhcCCCCC---CCEEeeCCCCeeecHHHHHHHHH
Confidence 67888888999999999999999999999988751 11236777777777 999998875 6666666666543
No 184
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=96.83 E-value=0.012 Score=38.17 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=27.6
Q ss_pred cEEEEEcCCChhHHHHHHHHhh----CC--CCCeEEEecCCCChHHHHHHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCG----MG--VNPTVYELDHDPRGADIERVL 90 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~----~~--v~~~~~~vd~~~~~~~~~~~L 90 (139)
-++.|+.+||+.|.+..+.|.+ ++ -.+.++-|..+++..+.++.+
T Consensus 4 ~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~ 54 (95)
T PF13905_consen 4 VLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFL 54 (95)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHH
Confidence 3566999999999988777754 33 455666665555544443333
No 185
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=96.81 E-value=0.0046 Score=45.10 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=18.0
Q ss_pred cEEEEEcCCChhHHHHHHHHhhC
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGM 68 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~ 68 (139)
-++.|+.+|||.|++....|+++
T Consensus 66 vll~F~a~wC~~C~~~~p~l~~l 88 (173)
T TIGR00385 66 VLLNVWASWCPPCRAEHPYLNEL 88 (173)
T ss_pred EEEEEECCcCHHHHHHHHHHHHH
Confidence 35558899999999887777654
No 186
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.003 Score=53.57 Aligned_cols=76 Identities=14% Similarity=0.157 Sum_probs=56.2
Q ss_pred CCCCccHHHHHHHHhcCCcEE--EEEcCCChhHHH-------HHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCC
Q 039295 28 NMPREEPMEKVARVASESAVV--IFSVSSCCMCHA-------VKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSS 98 (139)
Q Consensus 28 ~~~~~~~~~~~~~~i~~~~Vv--if~~~~Cp~C~~-------ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~ 98 (139)
..+..-..+.+.+.|..+.++ -|..|||.+|++ |-..|.+.+-+.....||-..+. .+...++.+.
T Consensus 25 ~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~-----~~~~~y~v~g 99 (493)
T KOG0190|consen 25 EDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEES-----DLASKYEVRG 99 (493)
T ss_pred cceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhh-----hhHhhhcCCC
Confidence 334456678889999998754 499999999974 44556666556667777776552 5888889888
Q ss_pred CCCccEE--EECCEE
Q 039295 99 AVPVPIV--FIGGKL 111 (139)
Q Consensus 99 ~~~vP~I--fi~g~~ 111 (139)
+|++ |.||+.
T Consensus 100 ---yPTlkiFrnG~~ 111 (493)
T KOG0190|consen 100 ---YPTLKIFRNGRS 111 (493)
T ss_pred ---CCeEEEEecCCc
Confidence 9998 788875
No 187
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.77 E-value=0.0025 Score=41.91 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=37.9
Q ss_pred CCcEEEEEcCCChhHHHHHHHHhhCC----CCCeEEEecCCCChHHHHHHHHHHhCCC--CCCCccEEEE
Q 039295 44 ESAVVIFSVSSCCMCHAVKRLFCGMG----VNPTVYELDHDPRGADIERVLMRLLANS--SAVPVPIVFI 107 (139)
Q Consensus 44 ~~~Vvif~~~~Cp~C~~ak~~L~~~~----v~~~~~~vd~~~~~~~~~~~L~~~~g~~--~~~~vP~Ifi 107 (139)
..-+++|..+||+.|...+..|++.. -++.+..||.+.. ..+.+.+|.. . +|++.+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~-----~~~~~~~~i~~~~---~P~~~~ 74 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDF-----GRHLEYFGLKEED---LPVIAI 74 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhh-----HHHHHHcCCChhh---CCEEEE
Confidence 34567788999999999999987642 2334444444432 2466777887 6 999854
No 188
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=96.75 E-value=0.0029 Score=47.91 Aligned_cols=69 Identities=22% Similarity=0.375 Sum_probs=38.9
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCC--C--eEEEe-----------cCCCChHHHHHHHHHHhCCCCCCCccEEEECCE-
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVN--P--TVYEL-----------DHDPRGADIERVLMRLLANSSAVPVPIVFIGGK- 110 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~--~--~~~~v-----------d~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~- 110 (139)
|.+|++.+|..|-.|-++|.++.-. + --+.| -..+..-+-|....+..|..+ ++.|+++|||.
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~-vYTPQ~vVnG~~ 80 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAARPDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRS-VYTPQVVVNGRE 80 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHHTSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S----SSEEEETTTE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcCCCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCC-CcCCeEEECCee
Confidence 6899999999999999999765311 1 11111 112223344566777766663 67899999995
Q ss_pred EEeccH
Q 039295 111 LIGAMD 116 (139)
Q Consensus 111 ~iGG~~ 116 (139)
..+|++
T Consensus 81 ~~~g~~ 86 (202)
T PF06764_consen 81 HRVGSD 86 (202)
T ss_dssp EEETT-
T ss_pred eeeccC
Confidence 556666
No 189
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=96.74 E-value=0.0034 Score=42.57 Aligned_cols=25 Identities=16% Similarity=0.338 Sum_probs=19.5
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhCC
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGMG 69 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~~ 69 (139)
..++.|+.+|||+|+...+.|..+.
T Consensus 22 ~~vl~F~~~~C~~C~~~~~~l~~~~ 46 (123)
T cd03011 22 PVLVYFWATWCPVCRFTSPTVNQLA 46 (123)
T ss_pred EEEEEEECCcChhhhhhChHHHHHH
Confidence 3566789999999998877776543
No 190
>PRK10357 putative glutathione S-transferase; Provisional
Probab=96.74 E-value=0.0066 Score=44.79 Aligned_cols=68 Identities=7% Similarity=-0.025 Sum_probs=51.5
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE-CCEEEeccHHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI-GGKLIGAMDRVMASH 122 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi-~g~~iGG~~~l~~l~ 122 (139)
++|+...||++++++-+|...|++|+.++++...... .+.+.+.... +|++.. +|..+-....|..+.
T Consensus 2 ~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~----~~~~~nP~g~---vP~L~~~~g~~l~eS~aI~~yL 70 (202)
T PRK10357 2 KLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADN----GVAQYNPLGK---VPALVTEEGECWFDSPIIAEYI 70 (202)
T ss_pred eeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCch----hhhhcCCccC---CCeEEeCCCCeeecHHHHHHHH
Confidence 6899999999999999999999999998887643322 3445566666 999984 677776666665543
No 191
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.72 E-value=0.009 Score=41.55 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHhh
Q 039295 44 ESAVVIFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 44 ~~~Vvif~~~~Cp~C~~ak~~L~~ 67 (139)
...|++|+...||+|.+....+.+
T Consensus 6 ~~~i~~f~D~~Cp~C~~~~~~l~~ 29 (154)
T cd03023 6 DVTIVEFFDYNCGYCKKLAPELEK 29 (154)
T ss_pred CEEEEEEECCCChhHHHhhHHHHH
Confidence 346888999999999988777654
No 192
>smart00594 UAS UAS domain.
Probab=96.60 E-value=0.026 Score=38.92 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=48.5
Q ss_pred CCCCccHHHHHHHHhcCCc--EEEEEcCCChhHHHHHH-HHhhCCC------CCeEEEecCCCChHHHHHHHHHHhCCCC
Q 039295 28 NMPREEPMEKVARVASESA--VVIFSVSSCCMCHAVKR-LFCGMGV------NPTVYELDHDPRGADIERVLMRLLANSS 98 (139)
Q Consensus 28 ~~~~~~~~~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~-~L~~~~v------~~~~~~vd~~~~~~~~~~~L~~~~g~~~ 98 (139)
.+...+..+.++++.+.++ ++.+..+||++|+...+ .|.+-.+ .|....+|...... ..+...++..+
T Consensus 10 ~f~~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg---~~l~~~~~~~~ 86 (122)
T smart00594 10 LFYQGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEG---QRVSQFYKLDS 86 (122)
T ss_pred ceeeCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhH---HHHHHhcCcCC
Confidence 4566788899898888753 55577899999987533 4443221 35554455443222 25777888887
Q ss_pred CCCccEE-EEC
Q 039295 99 AVPVPIV-FIG 108 (139)
Q Consensus 99 ~~~vP~I-fi~ 108 (139)
+|.+ +++
T Consensus 87 ---~P~~~~l~ 94 (122)
T smart00594 87 ---FPYVAIVD 94 (122)
T ss_pred ---CCEEEEEe
Confidence 9988 444
No 193
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.58 E-value=0.009 Score=46.62 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=49.6
Q ss_pred cHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHh----hCCCCCeEEEecCCCChH----HHHHHHHHHhCCCCCCCccE
Q 039295 33 EPMEKVARVASESAVVIFSVSSCCMCHAVKRLFC----GMGVNPTVYELDHDPRGA----DIERVLMRLLANSSAVPVPI 104 (139)
Q Consensus 33 ~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~----~~~v~~~~~~vd~~~~~~----~~~~~L~~~~g~~~~~~vP~ 104 (139)
...+.++.+.+...+++|.++.||||+..-..|+ ++|++..-+.+|...... ..-....+..|... +|.
T Consensus 133 ~~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~---~PA 209 (248)
T PRK13703 133 QQRQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKY---FPA 209 (248)
T ss_pred HHHHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcc---cce
Confidence 3455577777888999999999999998766665 568877777777532110 00012445668887 999
Q ss_pred EEE
Q 039295 105 VFI 107 (139)
Q Consensus 105 Ifi 107 (139)
+|+
T Consensus 210 l~L 212 (248)
T PRK13703 210 LML 212 (248)
T ss_pred EEE
Confidence 976
No 194
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=96.57 E-value=0.012 Score=43.62 Aligned_cols=31 Identities=13% Similarity=0.401 Sum_probs=20.5
Q ss_pred cEEEEEcCCChhHHHHHHHHh----hCCCCCeEEE
Q 039295 46 AVVIFSVSSCCMCHAVKRLFC----GMGVNPTVYE 76 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~----~~~v~~~~~~ 76 (139)
-|+.|+.+|||.|++..+.+. +.++.+..+.
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~~~~~~~~~vv~Is 111 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKSIARAEETDVVMIS 111 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHhcCCcEEEEe
Confidence 355699999999997765553 3455444443
No 195
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=96.54 E-value=0.018 Score=36.38 Aligned_cols=57 Identities=18% Similarity=0.193 Sum_probs=43.3
Q ss_pred CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHH
Q 039295 53 SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 53 ~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~ 123 (139)
+.+|+|.++..+|+-.+++|+...... +. . ..... +|.|..+|+.|+|++.++++.+
T Consensus 14 s~sp~clk~~~~Lr~~~~~~~v~~~~n-~~-------~---sp~gk---LP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 14 SVDPECLAVLAYLKFAGAPLKVVPSNN-PW-------R---SPTGK---LPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred cCCHHHHHHHHHHHcCCCCEEEEecCC-CC-------C---CCCCc---cCEEEECCEEecChHHHHHHHH
Confidence 468999999999999999997663332 21 0 12234 9999999999999998887654
No 196
>PLN02395 glutathione S-transferase
Probab=96.53 E-value=0.016 Score=43.15 Aligned_cols=72 Identities=13% Similarity=0.058 Sum_probs=54.2
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~ 123 (139)
+++|+.+.| .+.+++-+|.+.|++|+.+.++..... ...+++.+.+.... ||++..+|..+.....+..+..
T Consensus 3 ~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~~nP~g~---vP~L~~~~~~l~ES~aI~~YL~ 74 (215)
T PLN02395 3 LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGE-HKQPEYLALQPFGV---VPVIVDGDYKIFESRAIMRYYA 74 (215)
T ss_pred EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCC-cCCHHHHhhCCCCC---CCEEEECCEEEEcHHHHHHHHH
Confidence 689987775 479999999999999999988764210 01125777777777 9999999988888887777643
No 197
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.015 Score=44.27 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=51.8
Q ss_pred CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 54 SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 54 ~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
.||+|+++-..|...+++|....||...... .+...++.+. +|.+-.||+.+-..+.+....
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~~kp~----~f~~~sp~~~---~P~l~~d~~~~tDs~~Ie~~L 81 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLSRKPE----WFLDISPGGK---PPVLKFDEKWVTDSDKIEEFL 81 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecCCCcH----HHHhhCCCCC---CCeEEeCCceeccHHHHHHHH
Confidence 6999999999999999999888887765543 5778888777 999999999998888776653
No 198
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=96.50 E-value=0.01 Score=38.51 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=18.4
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHhh
Q 039295 43 SESAVVIFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 43 ~~~~Vvif~~~~Cp~C~~ak~~L~~ 67 (139)
...-++.|..+|||+|......|.+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHH
Confidence 3345777899999999977666654
No 199
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=96.38 E-value=0.022 Score=40.79 Aligned_cols=66 Identities=14% Similarity=0.272 Sum_probs=37.6
Q ss_pred CCcEEEEEcCCChhHHHHHHHHhhC----C-CCCeEEEecCCCChHHH-----------------HHHHHHHhCCCCCCC
Q 039295 44 ESAVVIFSVSSCCMCHAVKRLFCGM----G-VNPTVYELDHDPRGADI-----------------ERVLMRLLANSSAVP 101 (139)
Q Consensus 44 ~~~Vvif~~~~Cp~C~~ak~~L~~~----~-v~~~~~~vd~~~~~~~~-----------------~~~L~~~~g~~~~~~ 101 (139)
..-++.|+.+|||+|+.....|.+. + -.+.++-|+.+....++ ...+.+.+|...
T Consensus 62 k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~--- 138 (173)
T PRK03147 62 KGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP--- 138 (173)
T ss_pred CEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC---
Confidence 3346678899999999766555432 2 12334444433322221 124566677776
Q ss_pred ccEE-EEC--CEEE
Q 039295 102 VPIV-FIG--GKLI 112 (139)
Q Consensus 102 vP~I-fi~--g~~i 112 (139)
+|.+ +|| |+.+
T Consensus 139 ~P~~~lid~~g~i~ 152 (173)
T PRK03147 139 LPTTFLIDKDGKVV 152 (173)
T ss_pred cCeEEEECCCCcEE
Confidence 8975 454 6655
No 200
>PF07315 DUF1462: Protein of unknown function (DUF1462); InterPro: IPR009190 There are currently no experimental data for members of this group of bacterial proteins or their homologues. A crystal structure of Q7A6J8 from SWISSPROT revealed a thioredoxin-like fold, its core consisting of three layers alpha/beta/alpha.; PDB: 1XG8_A.
Probab=96.37 E-value=0.029 Score=37.15 Aligned_cols=67 Identities=15% Similarity=0.331 Sum_probs=35.9
Q ss_pred EEEEcC-CChhHH------HHHHHHh----hC----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEE
Q 039295 48 VIFSVS-SCCMCH------AVKRLFC----GM----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLI 112 (139)
Q Consensus 48 vif~~~-~Cp~C~------~ak~~L~----~~----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~i 112 (139)
+||++. -|+.|. ....||+ +. ...|+++||...++...-++...++..... -.|.|.++|+.+
T Consensus 1 ~VYGAe~~CASCVn~PsSkeTyeWL~aal~RKyp~~~f~~~YiDi~~p~~~~~~~~~a~~I~ede~--fYPlV~i~~eiV 78 (93)
T PF07315_consen 1 VVYGAEVICASCVNAPSSKETYEWLEAALKRKYPDQPFEFTYIDIENPPENDHDQQFAERILEDEL--FYPLVVINDEIV 78 (93)
T ss_dssp EEEE-SS--GGGSSS--HHHHHHHHHHHHHHH-TTS-EEEEEEETTT----HHHHHHHHHHHTTSS---SSEEEETTEEE
T ss_pred CcccccccchhhcCCCCchhHHHHHHHHHhCcCCCCceEEEEEecCCCCccHHHHHHHHHHHhccc--ccceEEECCEEE
Confidence 578876 588883 4444443 22 234677777776665333334444444332 279999999999
Q ss_pred eccH
Q 039295 113 GAMD 116 (139)
Q Consensus 113 GG~~ 116 (139)
|.-.
T Consensus 79 ~EGn 82 (93)
T PF07315_consen 79 AEGN 82 (93)
T ss_dssp EESS
T ss_pred ecCC
Confidence 7654
No 201
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=96.36 E-value=0.024 Score=42.33 Aligned_cols=71 Identities=11% Similarity=0.232 Sum_probs=50.7
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE-----CCE--EEeccHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI-----GGK--LIGAMDRVM 119 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi-----~g~--~iGG~~~l~ 119 (139)
+++|..+ +|+|.++.-+|.++|++|+.++|+..... ...+++.+++.... ||++.. ||. .+-...-|.
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~-~~~~~~~~iNP~gk---VP~L~~~~~~d~g~~~~L~ES~AI~ 76 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGG-QFRPEFLRISPNNK---IPAIVDHSPADGGEPLSLFESGAIL 76 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccc-cCCHHHHhhCcCCC---CCEEEeCCCCCCCCceeEEcHHHHH
Confidence 5788877 69999999999999999999988764321 11135677777677 999987 452 455555555
Q ss_pred HHH
Q 039295 120 ASH 122 (139)
Q Consensus 120 ~l~ 122 (139)
.+.
T Consensus 77 ~YL 79 (215)
T PRK13972 77 LYL 79 (215)
T ss_pred HHH
Confidence 543
No 202
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=96.33 E-value=0.02 Score=41.71 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=43.4
Q ss_pred HHHhcCCcEEE-EEcCCChhHHHH----HHHHhh---CCCCCeEEEecCCCChHHHHH--------------------HH
Q 039295 39 ARVASESAVVI-FSVSSCCMCHAV----KRLFCG---MGVNPTVYELDHDPRGADIER--------------------VL 90 (139)
Q Consensus 39 ~~~i~~~~Vvi-f~~~~Cp~C~~a----k~~L~~---~~v~~~~~~vd~~~~~~~~~~--------------------~L 90 (139)
.+.+...-|.+ |+..|||.|+.. ++++++ .+.+++++=|+.+.+..++.+ .|
T Consensus 28 ~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l 107 (157)
T KOG2501|consen 28 SEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKL 107 (157)
T ss_pred hHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHH
Confidence 34444444555 677899999855 444433 345688888887766655433 34
Q ss_pred HHHhCCCCCCCccEEEE---CCEEE
Q 039295 91 MRLLANSSAVPVPIVFI---GGKLI 112 (139)
Q Consensus 91 ~~~~g~~~~~~vP~Ifi---~g~~i 112 (139)
.+.++..+ +|.+.+ +|..|
T Consensus 108 ~~ky~v~~---iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 108 SEKYEVKG---IPALVILKPDGTVV 129 (157)
T ss_pred HHhcccCc---CceeEEecCCCCEe
Confidence 44666666 777644 56544
No 203
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=96.29 E-value=0.011 Score=39.47 Aligned_cols=56 Identities=14% Similarity=0.269 Sum_probs=31.5
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCC----CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMG----VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~----v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
-|+.|..+|||.|+.....|+++. -...++-+. +.+..+. ..+.+..+... +|.++
T Consensus 24 vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~-~~~~~~~~~~~---~p~~~ 83 (114)
T cd02967 24 TLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEH-QRFLKKHGLEA---FPYVL 83 (114)
T ss_pred EEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHH-HHHHHHhCCCC---CcEEe
Confidence 466688999999998877776542 223344332 2222222 23444455544 67654
No 204
>PRK11752 putative S-transferase; Provisional
Probab=96.09 E-value=0.037 Score=43.10 Aligned_cols=77 Identities=8% Similarity=0.115 Sum_probs=55.0
Q ss_pred HhcCCcEEEEEcCCChhHHHHHHHHhhC------CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECC----E
Q 039295 41 VASESAVVIFSVSSCCMCHAVKRLFCGM------GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGG----K 110 (139)
Q Consensus 41 ~i~~~~Vvif~~~~Cp~C~~ak~~L~~~------~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g----~ 110 (139)
....+++++|+.+ ||+|.++.-+|.++ |++|+.+.|+..... ...+++.+..-... ||++..++ .
T Consensus 39 ~~~~~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~-~~~~e~~~iNP~Gk---VP~Lv~~dg~~~~ 113 (264)
T PRK11752 39 PVGKHPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGD-QFSSGFVEINPNSK---IPALLDRSGNPPI 113 (264)
T ss_pred CCCCCCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCcccc-ccCHHHHhhCCCCC---CCEEEeCCCCCCe
Confidence 4455689999864 99999999999997 888988888754321 11135677776667 99998852 4
Q ss_pred EEeccHHHHHHH
Q 039295 111 LIGAMDRVMASH 122 (139)
Q Consensus 111 ~iGG~~~l~~l~ 122 (139)
.+.....|..+.
T Consensus 114 ~L~ES~AIl~YL 125 (264)
T PRK11752 114 RVFESGAILLYL 125 (264)
T ss_pred EEEcHHHHHHHH
Confidence 666666666654
No 205
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=96.07 E-value=0.068 Score=33.63 Aligned_cols=68 Identities=12% Similarity=0.222 Sum_probs=49.5
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCC-hHHHHHHHHHHhCC-CCCCCccEEEEC-CEEEeccHHHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPR-GADIERVLMRLLAN-SSAVPVPIVFIG-GKLIGAMDRVMAS 121 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~-~~~~~~~L~~~~g~-~~~~~vP~Ifi~-g~~iGG~~~l~~l 121 (139)
+++|..+. .|..++-+|...|++|+.+.++.... ... +++.+.... .. +|.+..+ |..+-....+..+
T Consensus 3 l~l~~~~~--~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~--~e~~~~~p~~g~---vP~l~~~~~~~l~es~AI~~Y 73 (76)
T PF02798_consen 3 LTLYNGRG--RSERIRLLLAEKGVEYEDVRVDFEKGEHKS--PEFLAINPMFGK---VPALEDGDGFVLTESNAILRY 73 (76)
T ss_dssp EEEESSST--TTHHHHHHHHHTT--EEEEEEETTTTGGGS--HHHHHHTTTSSS---SSEEEETTTEEEESHHHHHHH
T ss_pred EEEECCCC--chHHHHHHHHHhcccCceEEEecccccccc--hhhhhcccccce---eeEEEECCCCEEEcHHHHHHH
Confidence 56666666 88999999999999999998886432 211 367676666 66 9999999 9988877766654
No 206
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=96.05 E-value=0.0099 Score=47.89 Aligned_cols=75 Identities=12% Similarity=0.201 Sum_probs=46.4
Q ss_pred cHHHHHHHHhcCCc-EEEEEcCCChhHHHHHHHHhhCCCCCeE----EEecCCCChHHHHHHHHHHhCCCCCCCccEE-E
Q 039295 33 EPMEKVARVASESA-VVIFSVSSCCMCHAVKRLFCGMGVNPTV----YELDHDPRGADIERVLMRLLANSSAVPVPIV-F 106 (139)
Q Consensus 33 ~~~~~~~~~i~~~~-Vvif~~~~Cp~C~~ak~~L~~~~v~~~~----~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I-f 106 (139)
+..+++.+.-...- .|=|..|||.+|++...+.++.|.+... +.|......+- .+++...|... +|+| |
T Consensus 32 DLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f--~aiAnefgiqG---YPTIk~ 106 (468)
T KOG4277|consen 32 DLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRF--PAIANEFGIQG---YPTIKF 106 (468)
T ss_pred hhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccc--hhhHhhhccCC---CceEEE
Confidence 34444444433332 5668899999999999999887755322 23333222211 36777789887 9998 5
Q ss_pred ECCEEE
Q 039295 107 IGGKLI 112 (139)
Q Consensus 107 i~g~~i 112 (139)
..|.+.
T Consensus 107 ~kgd~a 112 (468)
T KOG4277|consen 107 FKGDHA 112 (468)
T ss_pred ecCCee
Confidence 555433
No 207
>PTZ00102 disulphide isomerase; Provisional
Probab=96.03 E-value=0.0091 Score=49.64 Aligned_cols=51 Identities=12% Similarity=0.300 Sum_probs=32.7
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCC------CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGV------NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV 105 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v------~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I 105 (139)
++.|+.+||++|+.....|.++.. ...+..+|.+.+. ...+..+... +|++
T Consensus 379 lv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~-----~~~~~~~v~~---~Pt~ 435 (477)
T PTZ00102 379 LLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANE-----TPLEEFSWSA---FPTI 435 (477)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCc-----cchhcCCCcc---cCeE
Confidence 555899999999999988876421 1234444443321 3444556676 9988
No 208
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.90 E-value=0.032 Score=40.86 Aligned_cols=75 Identities=15% Similarity=0.298 Sum_probs=43.6
Q ss_pred cHHHHHHHHhcCCc--EEEEEcCCChhHHHHHHHHhhCC------CC-CeEEEecC--C---------CChHHHHHHHHH
Q 039295 33 EPMEKVARVASESA--VVIFSVSSCCMCHAVKRLFCGMG------VN-PTVYELDH--D---------PRGADIERVLMR 92 (139)
Q Consensus 33 ~~~~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~~~------v~-~~~~~vd~--~---------~~~~~~~~~L~~ 92 (139)
+..+..+.+.-.++ ++||.+++|+||.+.|+-+.... .+ |..+.++. . .+...-.++|++
T Consensus 30 ~~~~d~ksi~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~ 109 (182)
T COG2143 30 DVFDDNKSISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQ 109 (182)
T ss_pred hhHHHHHhcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHH
Confidence 34555566655443 88999999999998877654311 11 22222211 1 000001247899
Q ss_pred HhCCCCCCCccEE-EECCE
Q 039295 93 LLANSSAVPVPIV-FIGGK 110 (139)
Q Consensus 93 ~~g~~~~~~vP~I-fi~g~ 110 (139)
.++.++ .|++ |.|++
T Consensus 110 kf~vrs---tPtfvFfdk~ 125 (182)
T COG2143 110 KFAVRS---TPTFVFFDKT 125 (182)
T ss_pred Hhcccc---CceEEEEcCC
Confidence 999988 9988 55544
No 209
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=95.89 E-value=0.015 Score=41.15 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=24.6
Q ss_pred cHHHHHHHHhcCCc-E-EEEEcCCChhHHHHHHHH
Q 039295 33 EPMEKVARVASESA-V-VIFSVSSCCMCHAVKRLF 65 (139)
Q Consensus 33 ~~~~~~~~~i~~~~-V-vif~~~~Cp~C~~ak~~L 65 (139)
+..+.+..+.+.++ | ++|+++|||+|++.++.+
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 56777787777764 3 348899999999886653
No 210
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.016 Score=43.33 Aligned_cols=69 Identities=14% Similarity=0.260 Sum_probs=52.7
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE-CCEEEeccHHHHHHHHc
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI-GGKLIGAMDRVMASHIN 124 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi-~g~~iGG~~~l~~l~~~ 124 (139)
.+|..+-||||.+|+-++-=.+++++..-++.+++. .=.++-|... ||.+.- +|++.+-.-|++.+..+
T Consensus 2 kLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~-----Tp~rmiG~Kq---VPiL~Kedg~~m~ESlDIV~y~d~ 71 (215)
T COG2999 2 KLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEE-----TPIRMIGQKQ---VPILQKEDGRAMPESLDIVHYVDE 71 (215)
T ss_pred ceeEeccChHHHHHHHHhhccCCChhhheeccCccc-----Chhhhhcccc---cceEEccccccchhhhHHHHHHHH
Confidence 468889999999999999999999877776665542 2344568888 998854 67888887787776543
No 211
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=95.77 E-value=0.088 Score=33.56 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=42.8
Q ss_pred CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 53 SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 53 ~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
+..+.|.++.-+|+..|++|+.+++...+ .. ..... +|.+.+||+.|++..-+..+.
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~~~-------~~---~P~Gk---VP~L~~dg~vI~eS~aIl~yL 71 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRANAE-------FM---SPSGK---VPFIRVGNQIVSEFGPIVQFV 71 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCCcc-------cc---CCCCc---ccEEEECCEEEeCHHHHHHHH
Confidence 57888999999999999999888543211 11 11234 999999999999988877754
No 212
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.68 E-value=0.011 Score=41.24 Aligned_cols=28 Identities=14% Similarity=0.097 Sum_probs=18.2
Q ss_pred CCChhHHHHHHHHhh----CCCC--CeEEEecCC
Q 039295 53 SSCCMCHAVKRLFCG----MGVN--PTVYELDHD 80 (139)
Q Consensus 53 ~~Cp~C~~ak~~L~~----~~v~--~~~~~vd~~ 80 (139)
||||+|.+|...+.+ .... +..++|...
T Consensus 43 SWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred cCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 699999999888754 2333 444555544
No 213
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=95.56 E-value=0.079 Score=37.96 Aligned_cols=71 Identities=18% Similarity=0.225 Sum_probs=53.2
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCC-CCCccEEEECCEEEeccHHHHH
Q 039295 43 SESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSS-AVPVPIVFIGGKLIGAMDRVMA 120 (139)
Q Consensus 43 ~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~-~~~vP~Ifi~g~~iGG~~~l~~ 120 (139)
....+++|-.|.|.=|+.--..|+..|.+...++.+.. ..+++.+|.+. -.+==+..|||.+|-|.-.+.+
T Consensus 24 ~~~~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~-------~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~a 95 (149)
T COG3019 24 QATEMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDF-------LALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEA 95 (149)
T ss_pred ceeeEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcH-------HHHHHhcCCChhhccccEEEEcCEEEeccCCHHH
Confidence 34479999999999999999999988887666655544 26888777653 1124588999999988765433
No 214
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=95.42 E-value=0.12 Score=35.42 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=17.3
Q ss_pred cEEEEEcCCChhHHHHHHHHhhC
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGM 68 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~ 68 (139)
-|+.|+.+|||.|.+....|+++
T Consensus 26 vvl~F~a~~C~~C~~~~p~l~~l 48 (126)
T cd03012 26 VLLDFWTYCCINCLHTLPYLTDL 48 (126)
T ss_pred EEEEEECCCCccHHHHHHHHHHH
Confidence 46668899999999776666543
No 215
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.40 E-value=0.047 Score=40.90 Aligned_cols=70 Identities=13% Similarity=0.142 Sum_probs=49.3
Q ss_pred EEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHHc
Q 039295 50 FSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHIN 124 (139)
Q Consensus 50 f~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~~ 124 (139)
|+++.|.+ +++-.|.=.+++|+++-|+-..+..+.-.++++...-.. ||++.|||..+-..-.++.+.++
T Consensus 11 YWrSSCsw--RVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~k---VP~L~i~g~tl~eS~AII~YLeE 80 (217)
T KOG0868|consen 11 YWRSSCSW--RVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEK---VPTLVIDGLTLTESLAIIEYLEE 80 (217)
T ss_pred hhcccchH--HHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhh---CCeEEECCEEeehHHHHHHHHHh
Confidence 56788875 666667667777777766665443333346777776667 99999999998776666666544
No 216
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=95.40 E-value=0.2 Score=32.00 Aligned_cols=71 Identities=8% Similarity=-0.010 Sum_probs=45.6
Q ss_pred EEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHH-HHHHHHHH--h--CCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 49 IFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGAD-IERVLMRL--L--ANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 49 if~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~-~~~~L~~~--~--g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
+|.-..-+.|.+++-+|...|++|+.+.++....... -.+.+... . -... +|++..||..+.-...+..+.
T Consensus 3 l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~---vP~L~~~g~~l~ES~AIl~YL 78 (82)
T cd03075 3 LGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPN---LPYYIDGDVKLTQSNAILRYI 78 (82)
T ss_pred EEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCC---CCEEEECCEEEeehHHHHHHH
Confidence 4444455788899999999999999988876432100 00111111 1 2334 999999998887776666553
No 217
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=95.32 E-value=0.044 Score=47.32 Aligned_cols=83 Identities=22% Similarity=0.395 Sum_probs=50.3
Q ss_pred CCCCCCCC-CCccHHHHHHHHhcCCc---EEE-EEcCCChhHHHHHHHHhh-C----C-CCCeEEEecCCCChHHHHHHH
Q 039295 22 RSRSGGNM-PREEPMEKVARVASESA---VVI-FSVSSCCMCHAVKRLFCG-M----G-VNPTVYELDHDPRGADIERVL 90 (139)
Q Consensus 22 ~~~~~~~~-~~~~~~~~~~~~i~~~~---Vvi-f~~~~Cp~C~~ak~~L~~-~----~-v~~~~~~vd~~~~~~~~~~~L 90 (139)
.++++... .+.....+++++.+.++ |++ |+.+||-.|+.-++..=+ . . ..+.....|...+..++++.|
T Consensus 448 ~~~~~~~~~q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lL 527 (569)
T COG4232 448 QSVSHGEFWQPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALL 527 (569)
T ss_pred CCCccchhhhccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHH
Confidence 33334433 34444447777766554 666 999999999988776532 1 1 224555666655555655555
Q ss_pred HHHhCCCCCCCccEE-EEC
Q 039295 91 MRLLANSSAVPVPIV-FIG 108 (139)
Q Consensus 91 ~~~~g~~~~~~vP~I-fi~ 108 (139)
++ +|.-. +|.+ |.+
T Consensus 528 k~-~~~~G---~P~~~ff~ 542 (569)
T COG4232 528 KR-LGVFG---VPTYLFFG 542 (569)
T ss_pred HH-cCCCC---CCEEEEEC
Confidence 55 46665 9987 554
No 218
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.16 E-value=0.075 Score=45.69 Aligned_cols=71 Identities=10% Similarity=0.159 Sum_probs=48.9
Q ss_pred CCCCCccHHHHHHHHhcCC--c--EEEEEcCCChhHHHHHHHHhhCC-----CCCeEEEecCCCChHHHHHHHHHHhCCC
Q 039295 27 GNMPREEPMEKVARVASES--A--VVIFSVSSCCMCHAVKRLFCGMG-----VNPTVYELDHDPRGADIERVLMRLLANS 97 (139)
Q Consensus 27 ~~~~~~~~~~~~~~~i~~~--~--Vvif~~~~Cp~C~~ak~~L~~~~-----v~~~~~~vd~~~~~~~~~~~L~~~~g~~ 97 (139)
.++.+.+.++.+++++..- + +.+|+.+.|.+|..++.+|+++. +.+.++|...+ ..+.+.+|..
T Consensus 346 ~~~l~~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~-------~~~~~~~~v~ 418 (555)
T TIGR03143 346 GSLLDDSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEE-------PESETLPKIT 418 (555)
T ss_pred hhccCHHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccc-------hhhHhhcCCC
Confidence 4567777777777766432 3 56688889999999999998753 33444443332 2466777887
Q ss_pred CCCCccEEEE
Q 039295 98 SAVPVPIVFI 107 (139)
Q Consensus 98 ~~~~vP~Ifi 107 (139)
. +|.+.|
T Consensus 419 ~---~P~~~i 425 (555)
T TIGR03143 419 K---LPTVAL 425 (555)
T ss_pred c---CCEEEE
Confidence 7 899866
No 219
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.084 Score=40.47 Aligned_cols=57 Identities=26% Similarity=0.367 Sum_probs=43.0
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCC--CeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEE
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVN--PTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLI 112 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~--~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~i 112 (139)
.|.||+-.+|..|-..-+.|++.|+- .++++....+. +.-..+.-+ +|.||+||+.+
T Consensus 12 ~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a~~p~f-------~~~~~~V~S---vP~Vf~DGel~ 70 (265)
T COG5494 12 EVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDAELPPF-------LAFEKGVIS---VPSVFIDGELV 70 (265)
T ss_pred EEEEEEecchHHHHHHHHHHHhcCCCCCceEEEcCCChH-------HHhhcceee---cceEEEcCeEE
Confidence 68999999999999999999999874 44555444432 222235555 99999999977
No 220
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.06 Score=44.54 Aligned_cols=84 Identities=14% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCCCCCCCccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhC---CCCCeEEEecCCCChHHHHHHHHHHhCCCCCC
Q 039295 24 RSGGNMPREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGM---GVNPTVYELDHDPRGADIERVLMRLLANSSAV 100 (139)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~---~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~ 100 (139)
|-+.|-..++..+.++.+-..-...-|.+-.|..|-.+...|+-+ +-...-.-||-. -++++...+ +.-.
T Consensus 97 ~G~ppk~~q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa----~Fq~Evear-~IMa-- 169 (520)
T COG3634 97 GGHPPKEDQDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGA----LFQDEVEAR-NIMA-- 169 (520)
T ss_pred cCCCCchhHHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecch----hhHhHHHhc-ccee--
Confidence 344566677788888887777788888888888887777766654 333333333322 334455443 5556
Q ss_pred CccEEEECCEEEecc
Q 039295 101 PVPIVFIGGKLIGAM 115 (139)
Q Consensus 101 ~vP~Ifi~g~~iGG~ 115 (139)
||+||+||+.+|.-
T Consensus 170 -VPtvflnGe~fg~G 183 (520)
T COG3634 170 -VPTVFLNGEEFGQG 183 (520)
T ss_pred -cceEEEcchhhccc
Confidence 99999999988754
No 221
>PHA03075 glutaredoxin-like protein; Provisional
Probab=95.05 E-value=0.036 Score=38.45 Aligned_cols=35 Identities=9% Similarity=0.397 Sum_probs=29.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecC
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDH 79 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~ 79 (139)
..+++|++|.|+-|+.+..+|+++.-+|+...|+.
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNI 37 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYDILRVNI 37 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEe
Confidence 46889999999999999999999888887666543
No 222
>PRK10542 glutathionine S-transferase; Provisional
Probab=94.97 E-value=0.096 Score=38.37 Aligned_cols=71 Identities=14% Similarity=0.184 Sum_probs=47.9
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE-CCEEEeccHHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI-GGKLIGAMDRVMASH 122 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi-~g~~iGG~~~l~~l~ 122 (139)
++|+.+. +.+.++.-+|.+.|++|+.+.|+.........+.+.++..... +|++.+ ||..+-....+..+.
T Consensus 2 ~l~~~~~-s~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~---vPvL~~~~g~~l~eS~aI~~YL 73 (201)
T PRK10542 2 KLFYKPG-ACSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQ---VPALLLDDGTLLTEGVAIMQYL 73 (201)
T ss_pred ceeeccc-HHHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCC---CCeEEeCCCcEeecHHHHHHHH
Confidence 4666543 3467888899999999998888764221000125667766666 999986 677787777776654
No 223
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.96 E-value=0.034 Score=44.79 Aligned_cols=69 Identities=16% Similarity=0.309 Sum_probs=48.2
Q ss_pred HHHHHHhcCCcEEE--EEcCCChhHHHHHHHHhhCCCC---------CeEEEecCCCChHHHHHHHHHHhCCCCCCCccE
Q 039295 36 EKVARVASESAVVI--FSVSSCCMCHAVKRLFCGMGVN---------PTVYELDHDPRGADIERVLMRLLANSSAVPVPI 104 (139)
Q Consensus 36 ~~~~~~i~~~~Vvi--f~~~~Cp~C~~ak~~L~~~~v~---------~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~ 104 (139)
+.+..++..+.+++ |+++||++++..+.+|.+.... ...=.||-+.+ +.++..+.... +|+
T Consensus 4 ~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e-----~~ia~ky~I~K---yPT 75 (375)
T KOG0912|consen 4 ENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKE-----DDIADKYHINK---YPT 75 (375)
T ss_pred ccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchh-----hHHhhhhcccc---Cce
Confidence 44567777787655 8999999999999999764221 22333443332 36888888888 998
Q ss_pred E--EECCEEE
Q 039295 105 V--FIGGKLI 112 (139)
Q Consensus 105 I--fi~g~~i 112 (139)
+ |.||...
T Consensus 76 lKvfrnG~~~ 85 (375)
T KOG0912|consen 76 LKVFRNGEMM 85 (375)
T ss_pred eeeeeccchh
Confidence 7 8898644
No 224
>PTZ00057 glutathione s-transferase; Provisional
Probab=94.96 E-value=0.17 Score=37.54 Aligned_cols=74 Identities=9% Similarity=0.147 Sum_probs=51.7
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHH--HHhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLM--RLLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~--~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
+++++|+-+..+.|..++-+|...|++|+.+.++...+...-.+.+. ..+.... +|++.+||..+....-+..+
T Consensus 3 ~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~---vP~L~~~~~~l~eS~AI~~Y 78 (205)
T PTZ00057 3 EEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQ---VPILEMDNIIFAQSQAIVRY 78 (205)
T ss_pred CceEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCC---CCEEEECCEEEecHHHHHHH
Confidence 34889988889999999999999999999987754221100001111 2344445 99999999888777776664
No 225
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=94.89 E-value=0.054 Score=46.53 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=17.8
Q ss_pred EEEEEcCCChhHHHHHHHHhhC
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGM 68 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~ 68 (139)
|+-|+.+|||.|++....|.++
T Consensus 60 vV~FWATWCppCk~emP~L~eL 81 (521)
T PRK14018 60 LIKFWASWCPLCLSELGETEKW 81 (521)
T ss_pred EEEEEcCCCHHHHHHHHHHHHH
Confidence 4449999999999988887654
No 226
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=94.79 E-value=0.042 Score=43.27 Aligned_cols=68 Identities=13% Similarity=0.255 Sum_probs=49.5
Q ss_pred HHhcCCcEEEEEcC-------CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEE
Q 039295 40 RVASESAVVIFSVS-------SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLI 112 (139)
Q Consensus 40 ~~i~~~~Vvif~~~-------~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~i 112 (139)
+-.+...|-+|.-+ -.|||-++..+|+..+++|+.++-... .+....+ +|-|-+||++|
T Consensus 39 ~d~kkD~VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-----------~rSr~G~---lPFIELNGe~i 104 (281)
T KOG4244|consen 39 TDYKKDTVYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-----------RRSRNGT---LPFIELNGEHI 104 (281)
T ss_pred hccccCeEEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-----------eeccCCC---cceEEeCCeec
Confidence 34444556666543 468999999999999999998865432 2223445 99999999999
Q ss_pred eccHHHHHH
Q 039295 113 GAMDRVMAS 121 (139)
Q Consensus 113 GG~~~l~~l 121 (139)
.+.+-+...
T Consensus 105 aDS~~I~~~ 113 (281)
T KOG4244|consen 105 ADSDLIEDR 113 (281)
T ss_pred cccHHHHHH
Confidence 998866543
No 227
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.78 E-value=0.006 Score=42.52 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=23.9
Q ss_pred CCChhHHHHHHHHhh----CC--CCCeEEEecCCCChHHHHHHHHH--HhCCCCCCCccEEEE
Q 039295 53 SSCCMCHAVKRLFCG----MG--VNPTVYELDHDPRGADIERVLMR--LLANSSAVPVPIVFI 107 (139)
Q Consensus 53 ~~Cp~C~~ak~~L~~----~~--v~~~~~~vd~~~~~~~~~~~L~~--~~g~~~~~~vP~Ifi 107 (139)
+|||+|.+|...+++ .. ..+..+.|...+.=+.-...++. ..+... +|+++-
T Consensus 36 sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l~~---IPTLi~ 95 (119)
T PF06110_consen 36 SWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKLKG---IPTLIR 95 (119)
T ss_dssp BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC---S---SSEEEE
T ss_pred cccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeeeee---cceEEE
Confidence 599999999877654 22 23344455332100000012333 345566 999964
No 228
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=94.77 E-value=0.048 Score=42.93 Aligned_cols=80 Identities=19% Similarity=0.257 Sum_probs=49.2
Q ss_pred EEEEEcCCChhHHHHHHHHhhCC-----CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEEeccHHHH
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMG-----VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLIGAMDRVM 119 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~-----v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~iGG~~~l~ 119 (139)
|+-|+.+.++-|..+-..|..+- ++|.-+.....+ +...+.... +|+| |.+|..++.+-.+.
T Consensus 150 VVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~--------~~~~f~~~~---LPtllvYk~G~l~~~~V~l~ 218 (265)
T PF02114_consen 150 VVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP--------ASENFPDKN---LPTLLVYKNGDLIGNFVGLT 218 (265)
T ss_dssp EEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC--------TTTTS-TTC----SEEEEEETTEEEEEECTGG
T ss_pred EEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC--------cccCCcccC---CCEEEEEECCEEEEeEEehH
Confidence 44488899999999988887653 334334433322 122234455 9988 67999887665544
Q ss_pred HHH----HcCChHHHHHhcCcc
Q 039295 120 ASH----INGTLVPLLKEAGAL 137 (139)
Q Consensus 120 ~l~----~~g~L~~~L~~~g~~ 137 (139)
.+. ....|+.+|.+.|+|
T Consensus 219 ~~~g~df~~~dlE~~L~~~G~l 240 (265)
T PF02114_consen 219 DLLGDDFFTEDLEAFLIEYGVL 240 (265)
T ss_dssp GCT-TT--HHHHHHHHHTTTSS
T ss_pred HhcCCCCCHHHHHHHHHHcCCC
Confidence 322 123689999999997
No 229
>COG4837 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.77 E-value=0.1 Score=34.95 Aligned_cols=72 Identities=10% Similarity=0.233 Sum_probs=41.6
Q ss_pred cCCcEEEEEcC-CChhHH------HHHHHHh----hC--CCC--CeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 43 SESAVVIFSVS-SCCMCH------AVKRLFC----GM--GVN--PTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 43 ~~~~Vvif~~~-~Cp~C~------~ak~~L~----~~--~v~--~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
...++++|+.. -|..|. ..-.||+ +. +.+ |.++||...+.....++...++..... -.|.|.+
T Consensus 3 ~~~~l~VyGae~iCASCV~aPtsKdt~eWLeaalkRKyp~~~F~~~YiDI~n~~~e~~~~~~aekI~~dey--~YPlivv 80 (106)
T COG4837 3 NEAKLVVYGAEVICASCVNAPTSKDTYEWLEAALKRKYPNQPFKYTYIDITNPPLEDHDLQFAEKIEQDEY--FYPLIVV 80 (106)
T ss_pred ceeEEEEecchhhhHHhcCCCcchhHHHHHHHHHhccCCCCCcEEEEEEcCCCccHHHHHHHHHHHhcccc--cceEEEE
Confidence 34578899986 588884 3444444 32 344 466666544443332222233333222 3899999
Q ss_pred CCEEEeccH
Q 039295 108 GGKLIGAMD 116 (139)
Q Consensus 108 ~g~~iGG~~ 116 (139)
+++.++.-.
T Consensus 81 edeiVaeGn 89 (106)
T COG4837 81 EDEIVAEGN 89 (106)
T ss_pred cceEeecCC
Confidence 999997544
No 230
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.70 E-value=0.028 Score=43.76 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=18.3
Q ss_pred cEEEEEcCCChhHHHHHHHHhh
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~ 67 (139)
.|++|+.+.||||+++...+..
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~~ 141 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQARP 141 (251)
T ss_pred EEEEEECCCChhHHHHHHHHHH
Confidence 4889999999999998766543
No 231
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=94.66 E-value=0.16 Score=35.34 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=22.4
Q ss_pred cEEEEEcC-CChhHHHHHHHHhhC-------CCCCeEEEecCC
Q 039295 46 AVVIFSVS-SCCMCHAVKRLFCGM-------GVNPTVYELDHD 80 (139)
Q Consensus 46 ~Vvif~~~-~Cp~C~~ak~~L~~~-------~v~~~~~~vd~~ 80 (139)
.|+.|+.+ |||.|......|+++ ++.+..+..+.+
T Consensus 31 ~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~ 73 (146)
T PF08534_consen 31 VVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDD 73 (146)
T ss_dssp EEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSS
T ss_pred EEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCC
Confidence 36668888 999999776665543 344444544444
No 232
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.60 E-value=0.15 Score=47.28 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=17.6
Q ss_pred EEEEEcCCChhHHHHHHHHhhC
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGM 68 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~ 68 (139)
|+-|+.+|||.|+...+.|+++
T Consensus 424 ll~FWAsWC~pC~~e~P~L~~l 445 (1057)
T PLN02919 424 ILDFWTYCCINCMHVLPDLEFL 445 (1057)
T ss_pred EEEEECCcChhHHhHhHHHHHH
Confidence 4449999999999888877654
No 233
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=94.52 E-value=0.083 Score=39.89 Aligned_cols=96 Identities=18% Similarity=0.260 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCCcEEE-EEcCCChhHHHHHHH---HhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EE
Q 039295 34 PMEKVARVASESAVVI-FSVSSCCMCHAVKRL---FCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FI 107 (139)
Q Consensus 34 ~~~~~~~~i~~~~Vvi-f~~~~Cp~C~~ak~~---L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi 107 (139)
-++++....++.+||+ |..+.---|+-+-+- |....+.-.++.|+....+ .|....+... +|+| |.
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~P-----Flv~kL~IkV---LP~v~l~k 145 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAP-----FLVTKLNIKV---LPTVALFK 145 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCc-----eeeeeeeeeE---eeeEEEEE
Confidence 4677777777777776 889987777655444 4455566566666554322 5777888888 9988 88
Q ss_pred CCE---EEeccHHHHH--HHHcCChHHHHHhcCcc
Q 039295 108 GGK---LIGAMDRVMA--SHINGTLVPLLKEAGAL 137 (139)
Q Consensus 108 ~g~---~iGG~~~l~~--l~~~g~L~~~L~~~g~~ 137 (139)
||+ +|.||.+|=. -..-..|+..|...|+|
T Consensus 146 ~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~vi 180 (211)
T KOG1672|consen 146 NGKTVDYVVGFTDLGNKDDFTTETLENRLAKSGVI 180 (211)
T ss_pred cCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhccce
Confidence 996 5677777522 11223477777777765
No 234
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=94.34 E-value=0.072 Score=43.73 Aligned_cols=51 Identities=12% Similarity=0.275 Sum_probs=31.6
Q ss_pred EEEEEcCCChhHHHHHHHHhhC----CC---CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGM----GV---NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~----~v---~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
++.|..+||++|+.....+.++ .- .+.+..+|.+.. .+.. .+... +|++++
T Consensus 368 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n------~~~~-~~i~~---~Pt~~~ 425 (462)
T TIGR01130 368 LVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN------DVPP-FEVEG---FPTIKF 425 (462)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC------ccCC-CCccc---cCEEEE
Confidence 5569999999999888877653 11 234444544332 1222 56666 998844
No 235
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=94.33 E-value=0.056 Score=41.93 Aligned_cols=63 Identities=14% Similarity=0.272 Sum_probs=42.4
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCC-----------Ce----EEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVN-----------PT----VYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGK 110 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~-----------~~----~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~ 110 (139)
|.+|++.+|..|-.+-+.|.++--+ |- ..|.-...+.-+-|..+.+.+|... ++.|++|+||+
T Consensus 45 VELfTSQGCsSCPPAd~~l~k~a~~~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~-vyTPQavvnGr 122 (261)
T COG5429 45 VELFTSQGCSSCPPADANLAKLADDPGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARG-VYTPQAVVNGR 122 (261)
T ss_pred EEEeecCCcCCCChHHHHHHHhccCCCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCC-CCCchheeech
Confidence 7789999999999998888875322 21 1122222333344566777777764 66899999996
No 236
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=94.27 E-value=0.16 Score=36.05 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=15.4
Q ss_pred cEEEEEcCCChhHHHHHHHHhh
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~ 67 (139)
-|+.|+.+||| |..-...|.+
T Consensus 25 vvl~fwatwC~-C~~e~p~l~~ 45 (152)
T cd00340 25 LLIVNVASKCG-FTPQYEGLEA 45 (152)
T ss_pred EEEEEEcCCCC-chHHHHHHHH
Confidence 34558999999 9876666654
No 237
>PLN02412 probable glutathione peroxidase
Probab=94.23 E-value=0.27 Score=35.64 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=15.1
Q ss_pred cEEEEEcCCChhHHHHHHHHhh
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~ 67 (139)
-|+.|+.+|||.|.+....|.+
T Consensus 32 vlv~f~a~~C~~c~~e~~~l~~ 53 (167)
T PLN02412 32 LLIVNVASKCGLTDSNYKELNV 53 (167)
T ss_pred EEEEEeCCCCCChHHHHHHHHH
Confidence 3445889999999965444443
No 238
>PTZ00256 glutathione peroxidase; Provisional
Probab=93.79 E-value=0.21 Score=36.77 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=14.2
Q ss_pred EEEEcCCChhHHHHHHHHh
Q 039295 48 VIFSVSSCCMCHAVKRLFC 66 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~ 66 (139)
++|..+|||.|.+-...|.
T Consensus 46 v~n~atwCp~C~~e~p~l~ 64 (183)
T PTZ00256 46 VVNVACKCGLTSDHYTQLV 64 (183)
T ss_pred EEEECCCCCchHHHHHHHH
Confidence 4578999999997555554
No 239
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=93.73 E-value=0.13 Score=32.55 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=16.1
Q ss_pred EEcCCChhHHHHHHHHhhC
Q 039295 50 FSVSSCCMCHAVKRLFCGM 68 (139)
Q Consensus 50 f~~~~Cp~C~~ak~~L~~~ 68 (139)
|+.+|||+|+.+...|...
T Consensus 39 f~~~~C~~C~~~~~~l~~~ 57 (127)
T COG0526 39 FWAPWCPPCRAEAPLLEEL 57 (127)
T ss_pred EEcCcCHHHHhhchhHHHH
Confidence 4699999999998888764
No 240
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.57 E-value=0.32 Score=37.12 Aligned_cols=74 Identities=12% Similarity=0.084 Sum_probs=58.4
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~ 123 (139)
++++|+...-|.|+++.-.++.+|++|+.+.|+.... ....+++..+....+ ||++.-||-.+-....|..+..
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~g-e~~~pefl~~nP~~k---VP~l~d~~~~l~eS~AI~~Yl~ 75 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKG-EQKSPEFLKLNPLGK---VPALEDGGLTLWESHAILRYLA 75 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeecccc-ccCCHHHHhcCcCCC---CCeEecCCeEEeeHHHHHHHHH
Confidence 4689999999999999999999999999887766422 122246777777778 9999999988877777766543
No 241
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=93.51 E-value=0.29 Score=36.55 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=26.6
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhC---CCCC------eEEEecCC
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGM---GVNP------TVYELDHD 80 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~---~v~~------~~~~vd~~ 80 (139)
-.|+-|+.+||+.|+.-..+|.++ |+++ ..+++|..
T Consensus 61 V~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~ 105 (184)
T TIGR01626 61 VRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDA 105 (184)
T ss_pred EEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccc
Confidence 356669999999999888887654 5666 56666654
No 242
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=93.38 E-value=0.39 Score=37.18 Aligned_cols=22 Identities=9% Similarity=0.172 Sum_probs=16.0
Q ss_pred cEEEEEcCCChhHHHHHHHHhh
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~ 67 (139)
-|+.|+.+|||.|..-...|.+
T Consensus 102 vvl~FwAswCp~c~~e~p~L~~ 123 (236)
T PLN02399 102 LLIVNVASKCGLTSSNYSELSH 123 (236)
T ss_pred EEEEEEcCCCcchHHHHHHHHH
Confidence 4666999999999865544443
No 243
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=93.13 E-value=0.57 Score=33.67 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=15.6
Q ss_pred cEEEEEcCCChhHHHHHHHHhh
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~ 67 (139)
.|+.|..+|||.|......|.+
T Consensus 28 ~ll~f~~t~Cp~c~~~~~~l~~ 49 (171)
T cd02969 28 LVVMFICNHCPYVKAIEDRLNR 49 (171)
T ss_pred EEEEEECCCCccHHHHHHHHHH
Confidence 4666889999999865444443
No 244
>PTZ00056 glutathione peroxidase; Provisional
Probab=93.05 E-value=0.44 Score=35.66 Aligned_cols=21 Identities=14% Similarity=0.173 Sum_probs=15.4
Q ss_pred EEEEEcCCChhHHHHHHHHhh
Q 039295 47 VVIFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~ 67 (139)
|+.|+.+|||.|.+-...|.+
T Consensus 43 lv~fwAswC~~C~~e~p~L~~ 63 (199)
T PTZ00056 43 MITNSASKCGLTKKHVDQMNR 63 (199)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 555999999999875555544
No 245
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=92.97 E-value=0.52 Score=33.33 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=15.2
Q ss_pred EEEEEcCCChhHHHHHHHHh
Q 039295 47 VVIFSVSSCCMCHAVKRLFC 66 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~ 66 (139)
|+.|..+|||+|.....-|.
T Consensus 26 vv~~~as~C~~c~~~~~~l~ 45 (153)
T TIGR02540 26 LVVNVASECGFTDQNYRALQ 45 (153)
T ss_pred EEEEeCCCCCchhhhHHHHH
Confidence 56799999999986555443
No 246
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=92.77 E-value=0.33 Score=33.51 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=15.6
Q ss_pred CcEEEEE-cCCChhHHHHHHHHhh
Q 039295 45 SAVVIFS-VSSCCMCHAVKRLFCG 67 (139)
Q Consensus 45 ~~Vvif~-~~~Cp~C~~ak~~L~~ 67 (139)
..|++|. .+|||.|..-...|.+
T Consensus 25 ~~vl~f~~~~~Cp~C~~~~~~l~~ 48 (149)
T cd02970 25 PVVVVFYRGFGCPFCREYLRALSK 48 (149)
T ss_pred CEEEEEECCCCChhHHHHHHHHHH
Confidence 3455554 7899999876665554
No 247
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.7 Score=35.15 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=56.5
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
..+++.-+....|.-++-+|.-.|++|+...+..... +. .++..+.... +|++-|||..+.....+..+.
T Consensus 3 ~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~-w~---~~K~~~pfgq---lP~l~vDg~~i~QS~AI~RyL 72 (206)
T KOG1695|consen 3 PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA-WE---ELKDKMPFGQ---LPVLEVDGKKLVQSRAILRYL 72 (206)
T ss_pred ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc-hh---hhcccCCCCC---CCEEeECCEeeccHHHHHHHH
Confidence 4566667888999999999999999999999987753 22 5666666777 999999999998887776653
No 248
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=92.63 E-value=0.82 Score=32.02 Aligned_cols=55 Identities=20% Similarity=0.353 Sum_probs=34.3
Q ss_pred HHHHHHhhCCCCCeEEEecCCCChHH---HHHHHHHHhCCCCCCCccEEEECCEEE--eccHH
Q 039295 60 AVKRLFCGMGVNPTVYELDHDPRGAD---IERVLMRLLANSSAVPVPIVFIGGKLI--GAMDR 117 (139)
Q Consensus 60 ~ak~~L~~~~v~~~~~~vd~~~~~~~---~~~~L~~~~g~~~~~~vP~Ifi~g~~i--GG~~~ 117 (139)
.+-.+|++.|++..-+++..+|.... ...++.+..|... +|.++|||+.+ |.|-.
T Consensus 31 ~~~~~Lk~~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~---LPitlVdGeiv~~G~YPt 90 (123)
T PF06953_consen 31 ADLDWLKEQGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEA---LPITLVDGEIVKTGRYPT 90 (123)
T ss_dssp HHHHHHHHTT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG----SEEEETTEEEEESS---
T ss_pred HHHHHHHhCCceEEEEccccCHHHHHhCHHHHHHHHHcCccc---CCEEEECCEEEEecCCCC
Confidence 55677888999999999999887532 1223333447777 99999999976 55544
No 249
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=92.48 E-value=0.67 Score=34.00 Aligned_cols=75 Identities=21% Similarity=0.411 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCc-EEE-EEcCCChhHHHHHH-HHhhC------CCCCeEEEecCCCCh--HHH-HHHHHHHhCCCCCCCc
Q 039295 35 MEKVARVASESA-VVI-FSVSSCCMCHAVKR-LFCGM------GVNPTVYELDHDPRG--ADI-ERVLMRLLANSSAVPV 102 (139)
Q Consensus 35 ~~~~~~~i~~~~-Vvi-f~~~~Cp~C~~ak~-~L~~~------~v~~~~~~vd~~~~~--~~~-~~~L~~~~g~~~~~~v 102 (139)
.+.++++-+.++ |.| ++.++|.+|+...+ .|.+- +-.|.-+.||..+.. ..+ +......+|... .
T Consensus 27 ~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gG---w 103 (163)
T PF03190_consen 27 EEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGG---W 103 (163)
T ss_dssp HHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS------S
T ss_pred HHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCC---C
Confidence 455666665554 444 66899999986543 44332 223666667665432 221 223334446655 8
Q ss_pred cEE-EE--CCEEE
Q 039295 103 PIV-FI--GGKLI 112 (139)
Q Consensus 103 P~I-fi--~g~~i 112 (139)
|.. |+ +|+.+
T Consensus 104 Pl~vfltPdg~p~ 116 (163)
T PF03190_consen 104 PLTVFLTPDGKPF 116 (163)
T ss_dssp SEEEEE-TTS-EE
T ss_pred CceEEECCCCCee
Confidence 865 44 45554
No 250
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=92.48 E-value=0.66 Score=31.83 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=15.7
Q ss_pred CcEEEEEcCCChh-HHHHHHHHh
Q 039295 45 SAVVIFSVSSCCM-CHAVKRLFC 66 (139)
Q Consensus 45 ~~Vvif~~~~Cp~-C~~ak~~L~ 66 (139)
.-|+.|+.+||++ |......|+
T Consensus 24 ~~vl~f~~~~C~~~C~~~l~~l~ 46 (142)
T cd02968 24 PVLVYFGYTHCPDVCPTTLANLA 46 (142)
T ss_pred EEEEEEEcCCCcccCHHHHHHHH
Confidence 3566789999998 975544443
No 251
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=92.43 E-value=0.7 Score=29.14 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=41.7
Q ss_pred CChhHHHHHHHHhhCCCC---CeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE-CCEEEeccHHHHHHH
Q 039295 54 SCCMCHAVKRLFCGMGVN---PTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI-GGKLIGAMDRVMASH 122 (139)
Q Consensus 54 ~Cp~C~~ak~~L~~~~v~---~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi-~g~~iGG~~~l~~l~ 122 (139)
--|.|.++..+|+-.+.+ ++++..+.. . +..... +|.+.. +|+.+.|+.++.++.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~-~----------~Sptg~---LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNP-W----------LSPTGE---LPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCC-C----------cCCCCC---CCEEEECCCcEEECHHHHHHhh
Confidence 478999999999999998 555544432 1 112234 999999 999999999998763
No 252
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.12 Score=44.04 Aligned_cols=37 Identities=14% Similarity=0.333 Sum_probs=25.8
Q ss_pred HHHHHHhcCC---cEEEEEcCCChhHHHHHHHHhhCCCCC
Q 039295 36 EKVARVASES---AVVIFSVSSCCMCHAVKRLFCGMGVNP 72 (139)
Q Consensus 36 ~~~~~~i~~~---~Vvif~~~~Cp~C~~ak~~L~~~~v~~ 72 (139)
..+.+++.+. -.+-|.+|||++|++..+.+++++-.|
T Consensus 374 knfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~ 413 (493)
T KOG0190|consen 374 KNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKY 413 (493)
T ss_pred cCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHh
Confidence 3444544332 255599999999999999998876443
No 253
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.66 E-value=0.47 Score=40.20 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=51.7
Q ss_pred cCCChhHHHHHHHHhhC--CC-CCeEEEecCCCChHH-HHHHHHHHhCCCCCCCccEEEE-------CCEEEeccHHHHH
Q 039295 52 VSSCCMCHAVKRLFCGM--GV-NPTVYELDHDPRGAD-IERVLMRLLANSSAVPVPIVFI-------GGKLIGAMDRVMA 120 (139)
Q Consensus 52 ~~~Cp~C~~ak~~L~~~--~v-~~~~~~vd~~~~~~~-~~~~L~~~~g~~~~~~vP~Ifi-------~g~~iGG~~~l~~ 120 (139)
+..|||-.++.-+-+.+ ++ .|.+..|-.+|+.++ ..+.+.+..|+.. -.-|.|+- .|..+||++|+.+
T Consensus 1 ~~~cp~ya~~ellad~l~~~l~~f~~~ki~~~p~~w~~wl~~~c~~~~w~~-~~spiiwrel~~rggkg~l~gg~~~f~e 79 (452)
T cd05295 1 RADCPYYAKAELLADYLQKNLPDFRVHKIVKHPDEWEDWLQDLCKKNGWSH-KRSPIIWRELLDRGGKGLLLGGCNEFLE 79 (452)
T ss_pred CCCCchhHHHHHHHHHHHhhCCCceEEEccCChHHHHHHHHHHHHhcCCcc-CCCCeeHHHHHhcCCCceEecChHHHHH
Confidence 46899999998887765 44 489999999998764 3334444456552 23699964 6789999999988
Q ss_pred HHH
Q 039295 121 SHI 123 (139)
Q Consensus 121 l~~ 123 (139)
+.+
T Consensus 80 ~~~ 82 (452)
T cd05295 80 YAE 82 (452)
T ss_pred HHH
Confidence 754
No 254
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=91.06 E-value=0.63 Score=34.32 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=19.6
Q ss_pred CcEEE-EE-cCCChhHHHHHHHH-------hhCCCCCeEEEec
Q 039295 45 SAVVI-FS-VSSCCMCHAVKRLF-------CGMGVNPTVYELD 78 (139)
Q Consensus 45 ~~Vvi-f~-~~~Cp~C~~ak~~L-------~~~~v~~~~~~vd 78 (139)
+.++| |+ ..|||.|..-...| .+.++.+.-+.+|
T Consensus 32 k~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D 74 (187)
T TIGR03137 32 KWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD 74 (187)
T ss_pred CEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 34555 44 79999998644433 3345554444444
No 255
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.98 E-value=0.33 Score=39.74 Aligned_cols=59 Identities=17% Similarity=0.268 Sum_probs=40.1
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHhhC----CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECC
Q 039295 43 SESAVVIFSVSSCCMCHAVKRLFCGM----GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGG 109 (139)
Q Consensus 43 ~~~~Vvif~~~~Cp~C~~ak~~L~~~----~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g 109 (139)
...-++.|..+||++|.+....+.+. .-......||-+.. ..+.+.++... +|++ |-.|
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~-----~~~~~~y~i~g---fPtl~~f~~~ 111 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEH-----KDLCEKYGIQG---FPTLKVFRPG 111 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhh-----HHHHHhcCCcc---CcEEEEEcCC
Confidence 34458889999999999877666543 22334445554432 26888889988 9998 4455
No 256
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=90.54 E-value=1.5 Score=29.11 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=30.9
Q ss_pred HHhcCCcEEEEEcC-CChhHHHHHHHHhhC----CC-CCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 40 RVASESAVVIFSVS-SCCMCHAVKRLFCGM----GV-NPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 40 ~~i~~~~Vvif~~~-~Cp~C~~ak~~L~~~----~v-~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
++.....|+.|+.+ |||.|...-..|.++ .. .+.++-|..++.. ++ ..+.+..+.. +|.+.-
T Consensus 22 ~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~-~~-~~~~~~~~~~----~~~~~D 89 (124)
T PF00578_consen 22 DLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPE-EI-KQFLEEYGLP----FPVLSD 89 (124)
T ss_dssp GGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHH-HH-HHHHHHHTCS----SEEEEE
T ss_pred HHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeeccccccc-ch-hhhhhhhccc----cccccC
Confidence 34333345556777 999997655444432 21 2344444443322 22 2344444432 677665
No 257
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=90.46 E-value=0.044 Score=42.41 Aligned_cols=70 Identities=14% Similarity=0.267 Sum_probs=48.7
Q ss_pred cHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhh-------CCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE
Q 039295 33 EPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCG-------MGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV 105 (139)
Q Consensus 33 ~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~-------~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I 105 (139)
-.++..++++...=.++|..+|||.|...+..|.. ++|...++||..++- |.-++-... +|+|
T Consensus 29 ~~eenw~~~l~gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npg-------LsGRF~vta---LptI 98 (248)
T KOG0913|consen 29 IDEENWKELLTGEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPG-------LSGRFLVTA---LPTI 98 (248)
T ss_pred ecccchhhhhchHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccc-------cceeeEEEe---cceE
Confidence 34455666666666788999999999999998875 355667888887763 443333344 8999
Q ss_pred --EECCEEE
Q 039295 106 --FIGGKLI 112 (139)
Q Consensus 106 --fi~g~~i 112 (139)
..||.|-
T Consensus 99 YHvkDGeFr 107 (248)
T KOG0913|consen 99 YHVKDGEFR 107 (248)
T ss_pred EEeeccccc
Confidence 5677643
No 258
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=90.11 E-value=0.27 Score=35.14 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=18.8
Q ss_pred CCcEEEEEcCCChhHHHHHHHHh
Q 039295 44 ESAVVIFSVSSCCMCHAVKRLFC 66 (139)
Q Consensus 44 ~~~Vvif~~~~Cp~C~~ak~~L~ 66 (139)
...|+.|+...||+|..+...+.
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~ 38 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILE 38 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHH
Confidence 45688899999999998766664
No 259
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=89.79 E-value=6.1 Score=30.41 Aligned_cols=95 Identities=17% Similarity=0.305 Sum_probs=62.6
Q ss_pred CccHHHHHHHHhcCC-cEEEEE------cCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCcc
Q 039295 31 REEPMEKVARVASES-AVVIFS------VSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVP 103 (139)
Q Consensus 31 ~~~~~~~~~~~i~~~-~Vvif~------~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP 103 (139)
.....+.+...++.. +=+.|. ..+-+|-.+++..|.++|.....+++...+.. .+...... .=
T Consensus 17 ~~~~~~~i~n~l~g~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~-----~Ie~~l~~-----~d 86 (224)
T COG3340 17 LEHFLPFIANFLQGKRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLEVSELHLSKPPLA-----AIENKLMK-----AD 86 (224)
T ss_pred hhhhhHHHHHHhcCCCceEEEEecCccccchHHHHHHHHHHHHHcCCeeeeeeccCCCHH-----HHHHhhhh-----cc
Confidence 456667777766553 333333 24788999999999999998888887776532 34444333 34
Q ss_pred EEEECCEEEeccHHHHHHHHcCChHHHHHh---cCccC
Q 039295 104 IVFIGGKLIGAMDRVMASHINGTLVPLLKE---AGALW 138 (139)
Q Consensus 104 ~Ifi~g~~iGG~~~l~~l~~~g~L~~~L~~---~g~~~ 138 (139)
.|+|+| |..-.++..-++-.|.++|++ .|++|
T Consensus 87 ~IyVgG---GNTF~LL~~lke~gld~iIr~~vk~G~~Y 121 (224)
T COG3340 87 IIYVGG---GNTFNLLQELKETGLDDIIRERVKAGTPY 121 (224)
T ss_pred EEEECC---chHHHHHHHHHHhCcHHHHHHHHHcCCce
Confidence 788877 555566666666667777764 56654
No 260
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=89.44 E-value=0.98 Score=33.77 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=20.9
Q ss_pred CcEEE--EEcCCChhHHHHHHH-------HhhCCCCCeEEEecC
Q 039295 45 SAVVI--FSVSSCCMCHAVKRL-------FCGMGVNPTVYELDH 79 (139)
Q Consensus 45 ~~Vvi--f~~~~Cp~C~~ak~~-------L~~~~v~~~~~~vd~ 79 (139)
+.+++ |..+|||.|..-... |++.|+.+.-+.+|.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 34544 667899999864443 344566555555554
No 261
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=89.42 E-value=2.6 Score=28.13 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=42.7
Q ss_pred EEEcCCChhHHHHHHHHhhCCC--CCeEEEecCCCChHHHHHHHHHHhCCCC--CCCccEEEECCE-EEeccHHHHHHHH
Q 039295 49 IFSVSSCCMCHAVKRLFCGMGV--NPTVYELDHDPRGADIERVLMRLLANSS--AVPVPIVFIGGK-LIGAMDRVMASHI 123 (139)
Q Consensus 49 if~~~~Cp~C~~ak~~L~~~~v--~~~~~~vd~~~~~~~~~~~L~~~~g~~~--~~~vP~Ifi~g~-~iGG~~~l~~l~~ 123 (139)
||....||.|.....++...+. .+.++++...++. ++.+..|... ....-.+.-+|+ ...|.+-+..+..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQ-----ALLASYGISPEDADSRLHLIDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhh-----hHHHhcCcCHHHHcCeeEEecCCCEEEEcHHHHHHHHH
Confidence 4677899999999999998875 4666666333221 2222223221 001233333776 8899998777654
Q ss_pred c
Q 039295 124 N 124 (139)
Q Consensus 124 ~ 124 (139)
.
T Consensus 76 ~ 76 (114)
T PF04134_consen 76 R 76 (114)
T ss_pred H
Confidence 4
No 262
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=89.40 E-value=0.32 Score=34.12 Aligned_cols=33 Identities=15% Similarity=0.110 Sum_probs=21.5
Q ss_pred CcEEEEEcCCChhHHHHHHHH----hhC----CCCCeEEEe
Q 039295 45 SAVVIFSVSSCCMCHAVKRLF----CGM----GVNPTVYEL 77 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L----~~~----~v~~~~~~v 77 (139)
..|++|+...||+|.+....+ +++ .+.+.++.+
T Consensus 14 ~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 14 ITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp EEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred eEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 358889999999998765444 443 344555555
No 263
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=89.08 E-value=2.3 Score=29.42 Aligned_cols=21 Identities=14% Similarity=0.222 Sum_probs=14.0
Q ss_pred EEEEE-cCCChhHHHHHHHHhh
Q 039295 47 VVIFS-VSSCCMCHAVKRLFCG 67 (139)
Q Consensus 47 Vvif~-~~~Cp~C~~ak~~L~~ 67 (139)
|++|. .+|||.|......|.+
T Consensus 32 vl~f~~~~~c~~C~~~~~~l~~ 53 (149)
T cd03018 32 VLVFFPLAFTPVCTKELCALRD 53 (149)
T ss_pred EEEEeCCCCCccHHHHHHHHHH
Confidence 44455 7899999866554443
No 264
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=89.01 E-value=0.73 Score=32.24 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=20.0
Q ss_pred HHHhCCCCCCCccEEEECCEEEeccHHHHH
Q 039295 91 MRLLANSSAVPVPIVFIGGKLIGAMDRVMA 120 (139)
Q Consensus 91 ~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~ 120 (139)
....|... +|++||||+.+.|..++..
T Consensus 129 ~~~~~i~~---tPt~~inG~~~~~~~~~~~ 155 (162)
T PF13462_consen 129 ARQLGITG---TPTFFINGKYVVGPYTIEE 155 (162)
T ss_dssp HHHHT-SS---SSEEEETTCEEETTTSHHH
T ss_pred HHHcCCcc---ccEEEECCEEeCCCCCHHH
Confidence 44558777 9999999999987665544
No 265
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=88.64 E-value=2.7 Score=29.83 Aligned_cols=73 Identities=21% Similarity=0.316 Sum_probs=47.3
Q ss_pred CCccHHHHHHHHhcCC--cE-EE-EEcCCChhHHHHHHHHhhCC--C-CC---eEEEecCCCChHHHHHHHHHHhCCCCC
Q 039295 30 PREEPMEKVARVASES--AV-VI-FSVSSCCMCHAVKRLFCGMG--V-NP---TVYELDHDPRGADIERVLMRLLANSSA 99 (139)
Q Consensus 30 ~~~~~~~~~~~~i~~~--~V-vi-f~~~~Cp~C~~ak~~L~~~~--v-~~---~~~~vd~~~~~~~~~~~L~~~~g~~~~ 99 (139)
+.-+....+.+++... ++ |+ |+.+|-|-|.+.-.+|.+.- + .| -.+|+|+.+ .+.+.++...
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~-------~~~~~~~l~~- 77 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVP-------DFVKMYELYD- 77 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhh-------hhhhhhcccC-
Confidence 3445667777777543 33 33 99999999999999987643 2 23 233444333 4666677776
Q ss_pred CCccEE--EECCEEE
Q 039295 100 VPVPIV--FIGGKLI 112 (139)
Q Consensus 100 ~~vP~I--fi~g~~i 112 (139)
.|++ |.+++++
T Consensus 78 --p~tvmfFfn~kHm 90 (142)
T KOG3414|consen 78 --PPTVMFFFNNKHM 90 (142)
T ss_pred --CceEEEEEcCceE
Confidence 6666 7777765
No 266
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=88.51 E-value=1.6 Score=29.80 Aligned_cols=19 Identities=21% Similarity=0.196 Sum_probs=12.0
Q ss_pred EEEEE-cCCChhHHHHHHHH
Q 039295 47 VVIFS-VSSCCMCHAVKRLF 65 (139)
Q Consensus 47 Vvif~-~~~Cp~C~~ak~~L 65 (139)
|+.|+ ..|||.|......|
T Consensus 27 ll~f~~~~~cp~C~~~~~~l 46 (140)
T cd03017 27 VLYFYPKDDTPGCTKEACDF 46 (140)
T ss_pred EEEEeCCCCCCchHHHHHHH
Confidence 44455 57999997543333
No 267
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=88.36 E-value=1.3 Score=31.93 Aligned_cols=23 Identities=22% Similarity=0.314 Sum_probs=14.9
Q ss_pred CcEEE-EE-cCCChhHHHHHHHHhh
Q 039295 45 SAVVI-FS-VSSCCMCHAVKRLFCG 67 (139)
Q Consensus 45 ~~Vvi-f~-~~~Cp~C~~ak~~L~~ 67 (139)
+.++| |+ .+|||.|......|.+
T Consensus 30 k~vvl~F~~~~~c~~C~~~l~~l~~ 54 (173)
T cd03015 30 KWVVLFFYPLDFTFVCPTEIIAFSD 54 (173)
T ss_pred CEEEEEEECCCCCCcCHHHHHHHHH
Confidence 34444 44 6899999876555543
No 268
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=87.47 E-value=1.5 Score=30.99 Aligned_cols=62 Identities=15% Similarity=0.108 Sum_probs=37.7
Q ss_pred cEEEEEcC---CChhHHHHHHHHh----hCC-CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEEecc
Q 039295 46 AVVIFSVS---SCCMCHAVKRLFC----GMG-VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLIGAM 115 (139)
Q Consensus 46 ~Vvif~~~---~Cp~C~~ak~~L~----~~~-v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~iGG~ 115 (139)
..++|... .+|-+.-+--+|. +++ -++.+..||.+.+ .++...+|..+ +|++ |-||+.+|-.
T Consensus 36 ~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~-----~~LA~~fgV~s---iPTLl~FkdGk~v~~i 107 (132)
T PRK11509 36 DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQS-----EAIGDRFGVFR---FPATLVFTGGNYRGVL 107 (132)
T ss_pred cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCC-----HHHHHHcCCcc---CCEEEEEECCEEEEEE
Confidence 34455443 4666654444443 343 2234444544443 26999999998 9988 7799988654
No 269
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=87.33 E-value=1.4 Score=30.01 Aligned_cols=22 Identities=18% Similarity=0.224 Sum_probs=14.0
Q ss_pred cEEEEE-cCCChhHHHHHHHHhh
Q 039295 46 AVVIFS-VSSCCMCHAVKRLFCG 67 (139)
Q Consensus 46 ~Vvif~-~~~Cp~C~~ak~~L~~ 67 (139)
.|++|+ ..|||.|......|.+
T Consensus 25 ~ll~f~~~~~c~~C~~~~~~l~~ 47 (140)
T cd02971 25 VVLFFYPKDFTPVCTTELCAFRD 47 (140)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHH
Confidence 344455 5799999865554443
No 270
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=87.19 E-value=4 Score=27.79 Aligned_cols=66 Identities=18% Similarity=0.269 Sum_probs=40.1
Q ss_pred hcCCcEEEEEcC-CChhHHHHHHHHhhC------CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEE
Q 039295 42 ASESAVVIFSVS-SCCMCHAVKRLFCGM------GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLI 112 (139)
Q Consensus 42 i~~~~Vvif~~~-~Cp~C~~ak~~L~~~------~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~i 112 (139)
....+++||=-+ .||=+..|.+-|++. ++++-+++|-.+ +.+-+++++.+|..- --|++ +-||+.+
T Consensus 17 S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~---R~vSn~IAe~~~V~H--eSPQ~ili~~g~~v 91 (105)
T PF11009_consen 17 SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEY---RPVSNAIAEDFGVKH--ESPQVILIKNGKVV 91 (105)
T ss_dssp ---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGG---HHHHHHHHHHHT------SSEEEEEETTEEE
T ss_pred cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeC---chhHHHHHHHhCCCc--CCCcEEEEECCEEE
Confidence 345678887655 599999888777642 266777776654 356678999999763 36998 5588876
No 271
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.16 E-value=1.5 Score=35.96 Aligned_cols=56 Identities=16% Similarity=0.215 Sum_probs=35.9
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHhhCC------CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 43 SESAVVIFSVSSCCMCHAVKRLFCGMG------VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 43 ~~~~Vvif~~~~Cp~C~~ak~~L~~~~------v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
+...++.|..|||++|+.....+++.. ..+.+..+|.+. ...+....+... +|++.
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~-----~~~~~~~~~v~~---~Pt~~ 223 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATV-----HKSLASRLEVRG---YPTLK 223 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccch-----HHHHhhhhcccC---CceEE
Confidence 334588899999999998866655432 334455555441 125666667776 88873
No 272
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.76 E-value=1.2 Score=34.38 Aligned_cols=51 Identities=27% Similarity=0.387 Sum_probs=29.0
Q ss_pred cEEEEEcCCChhHHHHHHHH----hhCCCCC------eEEEecCC--CChHHHHHHHHHHhCC
Q 039295 46 AVVIFSVSSCCMCHAVKRLF----CGMGVNP------TVYELDHD--PRGADIERVLMRLLAN 96 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L----~~~~v~~------~~~~vd~~--~~~~~~~~~L~~~~g~ 96 (139)
+|.+|+..-||+|-.-++-| .+++-.+ .-+..+.+ +.+.+.++.|.+.+|.
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~~~~~v~i~w~pf~l~p~~~~~g~~~~~~l~~k~g~ 69 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYPQEVRVEIRWRPFELDPDLPPEGLDRKEYLAQKYGI 69 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcCcceeEEEEecccccCCCCCcccccHHHHHHHHhCc
Confidence 68889999999996544444 4444221 11122222 2234456677777774
No 273
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=86.65 E-value=1.4 Score=30.44 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=15.9
Q ss_pred cCCcEEEEEcCC-ChhHHHHHHHHhh
Q 039295 43 SESAVVIFSVSS-CCMCHAVKRLFCG 67 (139)
Q Consensus 43 ~~~~Vvif~~~~-Cp~C~~ak~~L~~ 67 (139)
....|+.|..+| ||.|......|.+
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~ 51 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNK 51 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHH
Confidence 333455567767 7999877666643
No 274
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=86.12 E-value=2 Score=33.19 Aligned_cols=80 Identities=20% Similarity=0.322 Sum_probs=53.0
Q ss_pred EEcCCChhHHHHHHHHhhCCCCC---eEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEEeccHHHHHH---
Q 039295 50 FSVSSCCMCHAVKRLFCGMGVNP---TVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLIGAMDRVMAS--- 121 (139)
Q Consensus 50 f~~~~Cp~C~~ak~~L~~~~v~~---~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~iGG~~~l~~l--- 121 (139)
..-++-+-|......|.-+..+| .+..+...-.+ ....+.... +|++ |-||+.||.|-.+.+.
T Consensus 166 IYEdgi~gcealn~~~~cLAAeyP~vKFckikss~~g------as~~F~~n~---lP~LliYkgGeLIgNFv~va~qlge 236 (273)
T KOG3171|consen 166 IYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSNTG------ASDRFSLNV---LPTLLIYKGGELIGNFVSVAEQLGE 236 (273)
T ss_pred EecCCCchHHHHhhhHHHhhccCCceeEEEeeecccc------chhhhcccC---CceEEEeeCCchhHHHHHHHHHHhh
Confidence 44577888888877777666555 34444433221 222233444 8876 6799999999876553
Q ss_pred -HHcCChHHHHHhcCccC
Q 039295 122 -HINGTLVPLLKEAGALW 138 (139)
Q Consensus 122 -~~~g~L~~~L~~~g~~~ 138 (139)
+..|.|.+.|++-|++.
T Consensus 237 dffa~dle~FL~e~gllp 254 (273)
T KOG3171|consen 237 DFFAGDLESFLNEYGLLP 254 (273)
T ss_pred hhhhhhHHHHHHHcCCCc
Confidence 34589999999998863
No 275
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=85.76 E-value=0.3 Score=42.28 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=49.4
Q ss_pred HHHHHHHHhcC---CcEEEEEcCCChhHHHHHHHHhhCCCC----CeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 34 PMEKVARVASE---SAVVIFSVSSCCMCHAVKRLFCGMGVN----PTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 34 ~~~~~~~~i~~---~~Vvif~~~~Cp~C~~ak~~L~~~~v~----~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
..+.++.++-. ..+|-|..+||++|++....++.+... ..++.|-....+.+.-..+.+.++.+. +|++.
T Consensus 45 d~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~---~Ptlr 121 (606)
T KOG1731|consen 45 DVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG---YPTLR 121 (606)
T ss_pred ehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC---Cceee
Confidence 34445555533 357778899999999998888875422 233333333333333347888889888 99994
Q ss_pred E------C---CEEEec
Q 039295 107 I------G---GKLIGA 114 (139)
Q Consensus 107 i------~---g~~iGG 114 (139)
. + |..+.|
T Consensus 122 yf~~~~~~~~~G~~~~~ 138 (606)
T KOG1731|consen 122 YFPPDSQNKTDGSDVSG 138 (606)
T ss_pred ecCCccccCcCCCcccC
Confidence 4 2 566666
No 276
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=85.69 E-value=3.9 Score=29.84 Aligned_cols=74 Identities=9% Similarity=0.098 Sum_probs=51.0
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHh----------------------CCCCCCCccE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLL----------------------ANSSAVPVPI 104 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~----------------------g~~~~~~vP~ 104 (139)
|++=+.++=|.++++...|+++|++|+..-...+.....+.+.+++.. +..+ +|+
T Consensus 3 IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~---~PV 79 (156)
T TIGR01162 3 IIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTP---LPV 79 (156)
T ss_pred EEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccC---CCE
Confidence 444556788999999999999999998888888776666555554321 2233 677
Q ss_pred E--EECCEEEeccHHHHHHHH
Q 039295 105 V--FIGGKLIGAMDRVMASHI 123 (139)
Q Consensus 105 I--fi~g~~iGG~~~l~~l~~ 123 (139)
| -+.....+|.|.+.....
T Consensus 80 IgvP~~~~~l~G~daLlS~vq 100 (156)
T TIGR01162 80 IGVPVPSKALSGLDSLLSIVQ 100 (156)
T ss_pred EEecCCccCCCCHHHHHHHhc
Confidence 6 334455677777766655
No 277
>PRK13599 putative peroxiredoxin; Provisional
Probab=84.42 E-value=2 Score=32.67 Aligned_cols=32 Identities=9% Similarity=0.027 Sum_probs=18.4
Q ss_pred EEEcCCChhHHHHHHH-------HhhCCCCCeEEEecCC
Q 039295 49 IFSVSSCCMCHAVKRL-------FCGMGVNPTVYELDHD 80 (139)
Q Consensus 49 if~~~~Cp~C~~ak~~-------L~~~~v~~~~~~vd~~ 80 (139)
.|-.+|||.|..-... |.+.|+...-+.+|..
T Consensus 35 ~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~ 73 (215)
T PRK13599 35 SHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQV 73 (215)
T ss_pred EeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 3557899999864333 3344555444444443
No 278
>PRK13190 putative peroxiredoxin; Provisional
Probab=84.25 E-value=2 Score=32.17 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=13.9
Q ss_pred cEEE--EEcCCChhHHHHHHHHh
Q 039295 46 AVVI--FSVSSCCMCHAVKRLFC 66 (139)
Q Consensus 46 ~Vvi--f~~~~Cp~C~~ak~~L~ 66 (139)
.+++ |..+|||.|..-...|.
T Consensus 29 ~vvL~~~p~~~cp~C~~El~~l~ 51 (202)
T PRK13190 29 WVLLFSHPADFTPVCTTEFIAFS 51 (202)
T ss_pred EEEEEEEcCCCCCCCHHHHHHHH
Confidence 3544 56899999985544443
No 279
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=84.19 E-value=13 Score=26.56 Aligned_cols=76 Identities=11% Similarity=0.198 Sum_probs=45.9
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE-CCEEEeccHHHHHH
Q 039295 43 SESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI-GGKLIGAMDRVMAS 121 (139)
Q Consensus 43 ~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi-~g~~iGG~~~l~~l 121 (139)
+....+|+..-.||.|....++|.+..-.-.+.-.+...+... ++.+.+|.......-.+++ +|+.+-|.+-+.+.
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~e~g~---~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i 82 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQSEPGQ---ALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRI 82 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhccCCcEEEEeccCchhh---hHHhhcCCChhhhheeeEecCCceEeccHHHHHH
Confidence 4456788889999999999999988765533333333332222 5666666553111223344 56777777765443
No 280
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=83.90 E-value=2.1 Score=31.83 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=12.7
Q ss_pred cEEE-EE-cCCChhHHHHHHHH
Q 039295 46 AVVI-FS-VSSCCMCHAVKRLF 65 (139)
Q Consensus 46 ~Vvi-f~-~~~Cp~C~~ak~~L 65 (139)
.+++ |. ..|||.|..-...|
T Consensus 33 ~vvL~F~P~~~~p~C~~el~~l 54 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTELGDV 54 (187)
T ss_pred eEEEEEECCCCCCcCHHHHHHH
Confidence 4444 45 78999998643333
No 281
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=83.83 E-value=2.7 Score=31.85 Aligned_cols=43 Identities=12% Similarity=0.255 Sum_probs=33.7
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHH
Q 039295 43 SESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGAD 85 (139)
Q Consensus 43 ~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~ 85 (139)
....+.+|.+..|+.|...-..+..-+-++.++-|+...+...
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~~~Diylvgs~~dD~~ 150 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNAPLDLYLVGSQGDDER 150 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCCceeEEEecCCCCHHH
Confidence 3457999999999999988777777788888888885444433
No 282
>PF10865 DUF2703: Domain of unknown function (DUF2703); InterPro: IPR021219 This family of protein has no known function.
Probab=83.74 E-value=3.1 Score=29.02 Aligned_cols=48 Identities=21% Similarity=0.442 Sum_probs=31.2
Q ss_pred CChhHH-----------HHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEE
Q 039295 54 SCCMCH-----------AVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLI 112 (139)
Q Consensus 54 ~Cp~C~-----------~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~i 112 (139)
.|+-|. .++..|+.+|+......+...++ ++...+ -. .|.|.|||+.+
T Consensus 14 tC~RC~~Tg~~L~~av~~l~~~L~~~Giev~l~~~~l~~~------~~~~~~--~~---S~~I~inG~pi 72 (120)
T PF10865_consen 14 TCERCGDTGETLREAVKELAPVLAPLGIEVRLEEIELDEE------EFARQP--LE---SPTIRINGRPI 72 (120)
T ss_pred cCCchhhHHHHHHHHHHHHHHHHHhCCcEEEEEEEECChH------HHhhcc--cC---CCeeeECCEeh
Confidence 788885 44555777888765555544442 333333 23 79999999987
No 283
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=82.40 E-value=6.5 Score=28.71 Aligned_cols=76 Identities=12% Similarity=0.151 Sum_probs=52.0
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHh--CCCC-----------------CCCccEE--
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLL--ANSS-----------------AVPVPIV-- 105 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~--g~~~-----------------~~~vP~I-- 105 (139)
|+|=++++-+.-+++-..|+++|++|+..-+..+.....+.+..++.. |... ...+|+|
T Consensus 7 IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViGV 86 (162)
T COG0041 7 IIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIGV 86 (162)
T ss_pred EEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCCeEec
Confidence 455566778888999999999999999999998877666554443322 2200 0136666
Q ss_pred EECCEEEeccHHHHHHH
Q 039295 106 FIGGKLIGAMDRVMASH 122 (139)
Q Consensus 106 fi~g~~iGG~~~l~~l~ 122 (139)
-|..+.++|.|.+....
T Consensus 87 Pv~s~~L~GlDSL~SiV 103 (162)
T COG0041 87 PVQSKALSGLDSLLSIV 103 (162)
T ss_pred cCccccccchHHHHHHh
Confidence 55677778888766543
No 284
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=82.30 E-value=6.7 Score=29.06 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=14.8
Q ss_pred HHhcCCcEEEEEcCCChhHHH
Q 039295 40 RVASESAVVIFSVSSCCMCHA 60 (139)
Q Consensus 40 ~~i~~~~Vvif~~~~Cp~C~~ 60 (139)
+.....-+++|+.+||++|..
T Consensus 22 ~~~GKvvLVvf~AS~C~~~~q 42 (183)
T PRK10606 22 KYAGNVLLIVNVASKCGLTPQ 42 (183)
T ss_pred HhCCCEEEEEEEeCCCCCcHH
Confidence 333334567799999999974
No 285
>PRK13189 peroxiredoxin; Provisional
Probab=81.15 E-value=3.2 Score=31.57 Aligned_cols=36 Identities=11% Similarity=0.116 Sum_probs=20.3
Q ss_pred CCcEEE--EEcCCChhHHHHHHH-------HhhCCCCCeEEEecC
Q 039295 44 ESAVVI--FSVSSCCMCHAVKRL-------FCGMGVNPTVYELDH 79 (139)
Q Consensus 44 ~~~Vvi--f~~~~Cp~C~~ak~~-------L~~~~v~~~~~~vd~ 79 (139)
...+++ |-.+|||.|..-... |++.|+...-+.+|.
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 333554 567899999853333 344455544444444
No 286
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=81.11 E-value=4.2 Score=29.26 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=15.1
Q ss_pred cEEEEEcCC-ChhHHHHHHHHhh
Q 039295 46 AVVIFSVSS-CCMCHAVKRLFCG 67 (139)
Q Consensus 46 ~Vvif~~~~-Cp~C~~ak~~L~~ 67 (139)
-|+.|+.+| ||.|..-..-|.+
T Consensus 47 vvl~f~~s~~cp~C~~e~~~l~~ 69 (167)
T PRK00522 47 KVLNIFPSIDTGVCATSVRKFNQ 69 (167)
T ss_pred EEEEEEcCCCCCccHHHHHHHHH
Confidence 355577777 9999876555544
No 287
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=80.88 E-value=4.7 Score=28.19 Aligned_cols=19 Identities=16% Similarity=0.219 Sum_probs=11.0
Q ss_pred CCcEEE-EEc-CCChhHHHHH
Q 039295 44 ESAVVI-FSV-SSCCMCHAVK 62 (139)
Q Consensus 44 ~~~Vvi-f~~-~~Cp~C~~ak 62 (139)
.+.++| |+. .+||.|....
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~ 50 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQA 50 (154)
T ss_pred CCCEEEEEECCCCCCchHHHH
Confidence 334444 554 4799997543
No 288
>PRK15000 peroxidase; Provisional
Probab=80.22 E-value=5.6 Score=29.74 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=14.4
Q ss_pred cCCcEEEEEcC--CChhHHHHHHHHh
Q 039295 43 SESAVVIFSVS--SCCMCHAVKRLFC 66 (139)
Q Consensus 43 ~~~~Vvif~~~--~Cp~C~~ak~~L~ 66 (139)
+.+.+++|+-+ +||-|..-..-|.
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~ 58 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFD 58 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHH
Confidence 34456665544 7999986544443
No 289
>PRK13191 putative peroxiredoxin; Provisional
Probab=78.36 E-value=4.5 Score=30.67 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=22.6
Q ss_pred CCcEEE--EEcCCChhHHHHHHHHh-------hCCCCCeEEEecCCCC
Q 039295 44 ESAVVI--FSVSSCCMCHAVKRLFC-------GMGVNPTVYELDHDPR 82 (139)
Q Consensus 44 ~~~Vvi--f~~~~Cp~C~~ak~~L~-------~~~v~~~~~~vd~~~~ 82 (139)
.+.+++ |-.+|||.|..-...|. +.|+.+--+.+|....
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~ 80 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNIS 80 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 334444 56789999986444443 4456555555554433
No 290
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=78.02 E-value=7.5 Score=30.08 Aligned_cols=66 Identities=8% Similarity=0.122 Sum_probs=46.1
Q ss_pred CCccHHHHHHHHhcCCcEEEEEcC-----CChhHHHHHHHHhhC------CCCCeEEEecCCCChHHHHHHHHHHhCCCC
Q 039295 30 PREEPMEKVARVASESAVVIFSVS-----SCCMCHAVKRLFCGM------GVNPTVYELDHDPRGADIERVLMRLLANSS 98 (139)
Q Consensus 30 ~~~~~~~~~~~~i~~~~Vvif~~~-----~Cp~C~~ak~~L~~~------~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~ 98 (139)
.++.++..++.+-.+-.|++|..+ .-++=..++.+|+++ ++.++++|.+..++.. ++....+|...
T Consensus 12 LS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~---~~~~~~~Gi~~ 88 (271)
T PF09822_consen 12 LSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEA---EEKAKEYGIQP 88 (271)
T ss_pred CCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHH---HHHHHhcCCCc
Confidence 366788888888777788888887 566778889999876 5667777765555432 24455566554
No 291
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=77.92 E-value=4 Score=29.35 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.0
Q ss_pred HhCCCCCCCccEEEECCEEEeccHHHHHH
Q 039295 93 LLANSSAVPVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 93 ~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l 121 (139)
..|... +|+++|||+.+-|.+.+..+
T Consensus 162 ~~gi~g---vPtfvv~g~~~~G~~~l~~~ 187 (192)
T cd03022 162 ARGVFG---VPTFVVDGEMFWGQDRLDML 187 (192)
T ss_pred HcCCCc---CCeEEECCeeecccccHHHH
Confidence 347776 99999999999998876543
No 292
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=77.24 E-value=20 Score=24.41 Aligned_cols=66 Identities=12% Similarity=0.217 Sum_probs=39.5
Q ss_pred ccHHHHHHHHhcCCc-EEEEE-cC----CChhHH------HHHHHHhhCCCCCeEEEecCC-CChHHHHHHHHHHhCCCC
Q 039295 32 EEPMEKVARVASESA-VVIFS-VS----SCCMCH------AVKRLFCGMGVNPTVYELDHD-PRGADIERVLMRLLANSS 98 (139)
Q Consensus 32 ~~~~~~~~~~i~~~~-Vvif~-~~----~Cp~C~------~ak~~L~~~~v~~~~~~vd~~-~~~~~~~~~L~~~~g~~~ 98 (139)
....+.++.+.+..+ +.||. .+ ||-+|+ .+.++|++ .|...-.|.. +++. .+....+..+
T Consensus 4 gs~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~---~fv~w~~dv~~~eg~----~la~~l~~~~ 76 (116)
T cd02991 4 GTYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT---RMLFWACSVAKPEGY----RVSQALRERT 76 (116)
T ss_pred CcHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc---CEEEEEEecCChHHH----HHHHHhCCCC
Confidence 456778888777775 44444 34 688885 34555553 2434434443 2232 4777778887
Q ss_pred CCCccEE-EE
Q 039295 99 AVPVPIV-FI 107 (139)
Q Consensus 99 ~~~vP~I-fi 107 (139)
+|.+ ++
T Consensus 77 ---~P~~~~l 83 (116)
T cd02991 77 ---YPFLAMI 83 (116)
T ss_pred ---CCEEEEE
Confidence 9988 55
No 293
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=76.66 E-value=2.4 Score=30.52 Aligned_cols=32 Identities=13% Similarity=0.131 Sum_probs=22.0
Q ss_pred cEEEEEcCCChhHHHHHHHH----hhC-CCCCeEEEe
Q 039295 46 AVVIFSVSSCCMCHAVKRLF----CGM-GVNPTVYEL 77 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L----~~~-~v~~~~~~v 77 (139)
+|++|+...||||-.+...| +.+ +++++.+-+
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 48899999999997665554 444 565554444
No 294
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=76.11 E-value=9.3 Score=26.69 Aligned_cols=52 Identities=13% Similarity=0.030 Sum_probs=38.5
Q ss_pred CCCccHHHHHHHHhc-CCcEEEEEcCCChhHH------------HHHHHHhhCCCCCeEEEecCC
Q 039295 29 MPREEPMEKVARVAS-ESAVVIFSVSSCCMCH------------AVKRLFCGMGVNPTVYELDHD 80 (139)
Q Consensus 29 ~~~~~~~~~~~~~i~-~~~Vvif~~~~Cp~C~------------~ak~~L~~~~v~~~~~~vd~~ 80 (139)
.+..++.+.++++.+ ...|++.|......+. .+..+|++++++|..+.+...
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~kp 88 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVGKP 88 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeCCC
Confidence 355667777777644 4467777766666666 889999999999988887764
No 295
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=74.54 E-value=22 Score=26.04 Aligned_cols=76 Identities=11% Similarity=0.032 Sum_probs=43.7
Q ss_pred CccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCC------------CeEEEecCCCChHHHHHHHHHHhCCCC
Q 039295 31 REEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVN------------PTVYELDHDPRGADIERVLMRLLANSS 98 (139)
Q Consensus 31 ~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~------------~~~~~vd~~~~~~~~~~~L~~~~g~~~ 98 (139)
-+++.+.++++.. ..|.|=..|.+..=..|+.+|+.+++. |...+|-..... .-...+.+.+|...
T Consensus 47 ypdv~~iL~~L~~-~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~gsK~-~Hf~~i~~~tgI~y 124 (169)
T PF12689_consen 47 YPDVPEILQELKE-RGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPGSKT-THFRRIHRKTGIPY 124 (169)
T ss_dssp -TTHHHHHHHHHH-CT--EEEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS-HH-HHHHHHHHHH---G
T ss_pred CcCHHHHHHHHHH-CCCEEEEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecCchH-HHHHHHHHhcCCCh
Confidence 4678888887776 445554444444448999999998887 345555554322 33457778888876
Q ss_pred CCCccEEEECCEE
Q 039295 99 AVPVPIVFIGGKL 111 (139)
Q Consensus 99 ~~~vP~Ifi~g~~ 111 (139)
-=++|+|++.
T Consensus 125 ---~eMlFFDDe~ 134 (169)
T PF12689_consen 125 ---EEMLFFDDES 134 (169)
T ss_dssp ---GGEEEEES-H
T ss_pred ---hHEEEecCch
Confidence 6789998873
No 296
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=73.62 E-value=5.6 Score=29.66 Aligned_cols=20 Identities=25% Similarity=0.379 Sum_probs=16.3
Q ss_pred CCcEEEEEcCCChhHHHHHH
Q 039295 44 ESAVVIFSVSSCCMCHAVKR 63 (139)
Q Consensus 44 ~~~Vvif~~~~Cp~C~~ak~ 63 (139)
...|+.|+.-.||+|.+...
T Consensus 38 ~~~VvEffdy~CphC~~~~~ 57 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEE 57 (207)
T ss_pred CCeEEEEeCCCCccHHHhcc
Confidence 44688999999999998654
No 297
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=73.49 E-value=12 Score=29.49 Aligned_cols=42 Identities=14% Similarity=0.080 Sum_probs=23.3
Q ss_pred HHHHhcCCcEEEEE--cCCChhHHHHHHH-------HhhCCCCCeEEEecC
Q 039295 38 VARVASESAVVIFS--VSSCCMCHAVKRL-------FCGMGVNPTVYELDH 79 (139)
Q Consensus 38 ~~~~i~~~~Vvif~--~~~Cp~C~~ak~~-------L~~~~v~~~~~~vd~ 79 (139)
+.+..+...+++|. ..|||.|..-... |++.|+.+.-+.+|.
T Consensus 92 Lsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 92 SSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred HHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34444455566653 6899999863333 344555544444444
No 298
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=71.87 E-value=11 Score=25.47 Aligned_cols=26 Identities=19% Similarity=0.473 Sum_probs=22.6
Q ss_pred CChhHHHH-HHHHhhCCCCCeEEEecC
Q 039295 54 SCCMCHAV-KRLFCGMGVNPTVYELDH 79 (139)
Q Consensus 54 ~Cp~C~~a-k~~L~~~~v~~~~~~vd~ 79 (139)
.|-.|..| +++|.+.+|+...+.+..
T Consensus 20 qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 20 QCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred ehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 59999654 999999999999998877
No 299
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=71.86 E-value=14 Score=27.87 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=18.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHhh
Q 039295 44 ESAVVIFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 44 ~~~Vvif~~~~Cp~C~~ak~~L~~ 67 (139)
...|++|....||||++...-+..
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~ 108 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKK 108 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHH
Confidence 456888999999999766555554
No 300
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=71.79 E-value=6.2 Score=29.35 Aligned_cols=21 Identities=5% Similarity=0.127 Sum_probs=16.5
Q ss_pred cEEEEEcCCChhHHHHHHHHh
Q 039295 46 AVVIFSVSSCCMCHAVKRLFC 66 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~ 66 (139)
+|.+|+..-||||--+++.|.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~ 22 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLC 22 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHH
Confidence 588999999999976655553
No 301
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=70.72 E-value=6.8 Score=28.11 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=21.4
Q ss_pred HHHhCCCCCCCccEEEECCE-EEeccHHHHHH
Q 039295 91 MRLLANSSAVPVPIVFIGGK-LIGAMDRVMAS 121 (139)
Q Consensus 91 ~~~~g~~~~~~vP~Ifi~g~-~iGG~~~l~~l 121 (139)
....|... +|+++|||+ .+-|.+.+..+
T Consensus 160 a~~~gv~G---vP~~vv~g~~~~~G~~~~~~l 188 (193)
T PF01323_consen 160 ARQLGVFG---VPTFVVNGKYRFFGADRLDEL 188 (193)
T ss_dssp HHHTTCSS---SSEEEETTTEEEESCSSHHHH
T ss_pred HHHcCCcc---cCEEEECCEEEEECCCCHHHH
Confidence 34457777 999999999 78888876543
No 302
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=70.47 E-value=6.7 Score=27.74 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=17.6
Q ss_pred HHHhCCCCCCCccEEEECCEEEeccHH
Q 039295 91 MRLLANSSAVPVPIVFIGGKLIGAMDR 117 (139)
Q Consensus 91 ~~~~g~~~~~~vP~Ifi~g~~iGG~~~ 117 (139)
....|... +|+++|||+.+-+...
T Consensus 136 ~~~~gi~g---TPt~iInG~~~~~~~~ 159 (178)
T cd03019 136 AKKYKITG---VPAFVVNGKYVVNPSA 159 (178)
T ss_pred HHHcCCCC---CCeEEECCEEEEChhh
Confidence 34457776 9999999998755554
No 303
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=69.83 E-value=15 Score=25.98 Aligned_cols=64 Identities=20% Similarity=0.362 Sum_probs=38.1
Q ss_pred hHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHHcCChHHHHHh
Q 039295 57 MCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHINGTLVPLLKE 133 (139)
Q Consensus 57 ~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~~g~L~~~L~~ 133 (139)
|-.+.++.|.++|+.+..+++..... .++.+.+.. .-.||+.| |.-..+....++-.|.+.|++
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~-~~~~~~i~~---------ad~I~~~G---G~~~~l~~~l~~t~l~~~i~~ 64 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRND-ADILEAIRE---------ADAIFLGG---GDTFRLLRQLKETGLDEAIRE 64 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGH-HHHHHHHHH---------SSEEEE-----S-HHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCCh-HHHHHHHHh---------CCEEEECC---CCHHHHHHHHHhCCHHHHHHH
Confidence 34678899999998755555555422 232233322 56788887 666666676677778788775
No 304
>PF04566 RNA_pol_Rpb2_4: RNA polymerase Rpb2, domain 4; InterPro: IPR007646 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 4, is also known as the external 2 domain [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3S17_B 1I6H_B 4A3B_B 3K1F_B 4A3I_B 1TWA_B 3S14_B 3S15_B 2NVX_B 3M3Y_B ....
Probab=69.76 E-value=9.3 Score=23.43 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=14.3
Q ss_pred EEECCEEEeccHHHHHHH
Q 039295 105 VFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 105 Ifi~g~~iGG~~~l~~l~ 122 (139)
||+||.++|=.++-..+.
T Consensus 1 VFlNG~~iG~~~~p~~l~ 18 (63)
T PF04566_consen 1 VFLNGVWIGIHSDPEELV 18 (63)
T ss_dssp EEETTEEEEEESSHHHHH
T ss_pred CEECCEEEEEEcCHHHHH
Confidence 799999999888755543
No 305
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=69.71 E-value=3.7 Score=32.67 Aligned_cols=74 Identities=16% Similarity=0.314 Sum_probs=56.4
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHHc
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHIN 124 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~~ 124 (139)
.++|.-+..-+..+++-.+.+.|+.|+.++|+-.... ....-+.++..... ||++.-+...|-....++++.+.
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~ge-h~epwFmrlNp~ge---vPVl~~g~~II~d~tqIIdYvEr 100 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGE-HKEPWFMRLNPGGE---VPVLIHGDNIISDYTQIIDYVER 100 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCcccc-ccCchheecCCCCC---CceEecCCeecccHHHHHHHHHH
Confidence 7889999999999999999999999999999864211 11123444444444 99887777888999999988765
No 306
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=69.09 E-value=3.4 Score=30.86 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=17.1
Q ss_pred HHhCCCCCCCccEEEECCEEEeccHH
Q 039295 92 RLLANSSAVPVPIVFIGGKLIGAMDR 117 (139)
Q Consensus 92 ~~~g~~~~~~vP~Ifi~g~~iGG~~~ 117 (139)
+..|... +|+++|||+++-+...
T Consensus 161 ~~~gI~g---tPtfiInGky~v~~~~ 183 (207)
T PRK10954 161 ADLQLRG---VPAMFVNGKYMVNNQG 183 (207)
T ss_pred HHcCCCC---CCEEEECCEEEEcccc
Confidence 4457776 9999999998765443
No 307
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.09 E-value=8.6 Score=29.89 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=45.7
Q ss_pred HHHHHHhcCCc----EEEEEcCCChhHHHHHHHHhhCC-------CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccE
Q 039295 36 EKVARVASESA----VVIFSVSSCCMCHAVKRLFCGMG-------VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPI 104 (139)
Q Consensus 36 ~~~~~~i~~~~----Vvif~~~~Cp~C~~ak~~L~~~~-------v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~ 104 (139)
+.+.+.+..++ ++-|...|.|.|.+.-+.+.++. .+|..+||...++..+-. .+..-.+.+. +|+
T Consensus 133 q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kf-ris~s~~srQ---LPT 208 (265)
T KOG0914|consen 133 QLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKF-RISLSPGSRQ---LPT 208 (265)
T ss_pred hhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHhe-eeccCccccc---CCe
Confidence 33344444443 66688999999999988888764 446788999888643200 0011113334 787
Q ss_pred E--EECCEEEe
Q 039295 105 V--FIGGKLIG 113 (139)
Q Consensus 105 I--fi~g~~iG 113 (139)
+ |-+|+.+.
T Consensus 209 ~ilFq~gkE~~ 219 (265)
T KOG0914|consen 209 YILFQKGKEVS 219 (265)
T ss_pred EEEEccchhhh
Confidence 6 66776553
No 308
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=68.18 E-value=14 Score=26.23 Aligned_cols=19 Identities=37% Similarity=0.473 Sum_probs=12.7
Q ss_pred cCCcEEEEEc--CCChhHHHH
Q 039295 43 SESAVVIFSV--SSCCMCHAV 61 (139)
Q Consensus 43 ~~~~Vvif~~--~~Cp~C~~a 61 (139)
...+++||.- .+||.|..-
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e 48 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQ 48 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchh
Confidence 3446666554 589999864
No 309
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=66.19 E-value=8.6 Score=25.41 Aligned_cols=37 Identities=8% Similarity=-0.031 Sum_probs=24.3
Q ss_pred CccHHHHHHHHhc----CCcEEEEEcCCChhHHHHHHHHhhC
Q 039295 31 REEPMEKVARVAS----ESAVVIFSVSSCCMCHAVKRLFCGM 68 (139)
Q Consensus 31 ~~~~~~~~~~~i~----~~~Vvif~~~~Cp~C~~ak~~L~~~ 68 (139)
+.+.++.++++.+ +-.+++|+.+. ++|..++.+|++.
T Consensus 3 ~~~~~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~ 43 (94)
T cd02974 3 DANLKQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEI 43 (94)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHH
Confidence 3445555555443 23455577766 9999999999875
No 310
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=65.88 E-value=7.6 Score=26.76 Aligned_cols=51 Identities=18% Similarity=0.401 Sum_probs=31.8
Q ss_pred CChhHHHHHHHHhhCC---CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECC
Q 039295 54 SCCMCHAVKRLFCGMG---VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGG 109 (139)
Q Consensus 54 ~Cp~C~~ak~~L~~~~---v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g 109 (139)
.||+|..+.-+|.... -...+..|+-..-.. ++.+..|... -+.|++..++
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~----~vi~llGE~~-QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQ----AVIALLGEAN-QSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchH----HHHHHhChhc-cCCCEEEeCC
Confidence 4999999999998763 233444444433222 5666666431 1499997765
No 311
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=64.75 E-value=18 Score=26.67 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=20.9
Q ss_pred HHHhcCCcEEEEE-cCCChhHHHHHHHH-------hhCCCCCeEEEecCC
Q 039295 39 ARVASESAVVIFS-VSSCCMCHAVKRLF-------CGMGVNPTVYELDHD 80 (139)
Q Consensus 39 ~~~i~~~~Vvif~-~~~Cp~C~~ak~~L-------~~~~v~~~~~~vd~~ 80 (139)
.......-|++|+ ..+||.|.....-| .+.|+.+.-+.+|..
T Consensus 32 ~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 32 SSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred HHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 3333333334444 35788887543333 344666555555543
No 312
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=64.29 E-value=4.3 Score=29.27 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=16.3
Q ss_pred cEEEEEcCCChhHHHHHHHHh
Q 039295 46 AVVIFSVSSCCMCHAVKRLFC 66 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~ 66 (139)
+|.+|+.+.||+|-.+.+.|+
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~ 22 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLE 22 (193)
T ss_pred eEEEEECCCCchhhCchHHHH
Confidence 488999999999975555544
No 313
>PLN02590 probable tyrosine decarboxylase
Probab=63.11 E-value=58 Score=28.34 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=50.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhCCCC---CeEEEecCC----CChHHHHHHHHHHhCCCCCCCccEEEE---CCEEEec
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGMGVN---PTVYELDHD----PRGADIERVLMRLLANSSAVPVPIVFI---GGKLIGA 114 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~~v~---~~~~~vd~~----~~~~~~~~~L~~~~g~~~~~~vP~Ifi---~g~~iGG 114 (139)
.++++|....+-+|. .+.+.-+|+. ...+.+|.. -+...+++++.+-..... .|.+++ +-...|.
T Consensus 228 ~~~vvy~S~~aH~Sv--~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~---~P~~VvaTaGTT~tGa 302 (539)
T PLN02590 228 PQLVVYGSDQTHSSF--RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGF---IPFFICATVGTTSSAA 302 (539)
T ss_pred CCEEEEecCCchHHH--HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCC---CcEEEEEEeCCCCCcc
Confidence 468999999999984 4555555653 455556532 355566666665443334 676654 4467788
Q ss_pred cHHHHHHHHcCChHHHHHhcC
Q 039295 115 MDRVMASHINGTLVPLLKEAG 135 (139)
Q Consensus 115 ~~~l~~l~~~g~L~~~L~~~g 135 (139)
+|++.++ .++.++.|
T Consensus 303 iDpl~~I------a~i~~~~g 317 (539)
T PLN02590 303 VDPLVPL------GNIAKKYG 317 (539)
T ss_pred cCCHHHH------HHHHHHhC
Confidence 9988664 45666666
No 314
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=62.89 E-value=11 Score=28.44 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=20.9
Q ss_pred HHHHhCCCCCCCccEEEECCEEEeccHHHHH
Q 039295 90 LMRLLANSSAVPVPIVFIGGKLIGAMDRVMA 120 (139)
Q Consensus 90 L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~ 120 (139)
+...+|... .|++||+|+.++|.-++..
T Consensus 207 ~a~~~gv~g---TPt~~v~~~~~~g~~~~~~ 234 (244)
T COG1651 207 LAQQLGVNG---TPTFIVNGKLVPGLPDLDE 234 (244)
T ss_pred HHHhcCCCc---CCeEEECCeeecCCCCHHH
Confidence 344457776 9999999998888776443
No 315
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=62.11 E-value=7.4 Score=26.17 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=14.1
Q ss_pred cEEEEEcCCChhHHHH
Q 039295 46 AVVIFSVSSCCMCHAV 61 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~a 61 (139)
+|.||..+.||+|++.
T Consensus 2 ~v~vyyESlCPd~~~f 17 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRF 17 (108)
T ss_pred EEEEEEEecCHhHHHH
Confidence 5899999999999863
No 316
>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=62.05 E-value=34 Score=28.00 Aligned_cols=88 Identities=7% Similarity=0.015 Sum_probs=60.2
Q ss_pred CccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEE----------ecCCCChHHHHHHHHHHhCCCCCC
Q 039295 31 REEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYE----------LDHDPRGADIERVLMRLLANSSAV 100 (139)
Q Consensus 31 ~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~----------vd~~~~~~~~~~~L~~~~g~~~~~ 100 (139)
+-.+.+++..++...-+.||+-+.|..-..+..+.+.+.|||.... +...|.-......+.+.+|++.
T Consensus 49 sf~~~~~~C~l~~~GV~AIfGp~~~~s~~~v~s~c~~~~iP~i~~~~~~~~~~~~~l~l~P~l~~Ai~diI~~~~Wr~-- 126 (372)
T cd06387 49 SFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLTSFCGALHTSFITPSFPTDADVQFVIQMRPALKGAILSLLAHYKWEK-- 126 (372)
T ss_pred hHHHHHHHHHHhhcccEEEEecCCHhHHHHHHHhhccccCCeeeeCCCCCCCCceEEEEChhHHHHHHHHHHhcCCCE--
Confidence 4567778888889999999999999999999999999999985532 2233332222233445578887
Q ss_pred CccEEEECCEEEeccHHHHHH
Q 039295 101 PVPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 101 ~vP~Ifi~g~~iGG~~~l~~l 121 (139)
+=.||-+..-++...++.+.
T Consensus 127 -~~~iYd~d~gl~~Lq~L~~~ 146 (372)
T cd06387 127 -FVYLYDTERGFSILQAIMEA 146 (372)
T ss_pred -EEEEecCchhHHHHHHHHHh
Confidence 77778665555554444443
No 317
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=61.16 E-value=50 Score=26.01 Aligned_cols=104 Identities=18% Similarity=0.253 Sum_probs=63.7
Q ss_pred CCCCCCccHHHHHHHHhc--CCcEEEEEcCC--ChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCC
Q 039295 26 GGNMPREEPMEKVARVAS--ESAVVIFSVSS--CCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVP 101 (139)
Q Consensus 26 ~~~~~~~~~~~~~~~~i~--~~~Vvif~~~~--Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~ 101 (139)
|.-|-.++..+.....++ ...++||..|. -|-=.+++.+|++.|++..+ |...+.... .++|.+. |
T Consensus 40 GaKm~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~Iv--I~D~p~~K~-~d~l~~~-g------ 109 (277)
T PRK00994 40 GAKMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIV--IGDAPGKKV-KDAMEEQ-G------ 109 (277)
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEE--EcCCCccch-HHHHHhc-C------
Confidence 445555566666666643 34688888764 67778999999999997443 344443322 2455543 3
Q ss_pred ccEEEECCEE-EeccHHH----HHHHHcCChHHHHHhcCccCC
Q 039295 102 VPIVFIGGKL-IGAMDRV----MASHINGTLVPLLKEAGALWL 139 (139)
Q Consensus 102 vP~Ifi~g~~-iGG~~~l----~~l~~~g~L~~~L~~~g~~~~ 139 (139)
+=+|.+.... ||.-.++ .-..-|+.+.++|...|++++
T Consensus 110 ~GYIivk~DpMIGArREFLDP~EMa~fNaD~~kVLa~tG~~Rl 152 (277)
T PRK00994 110 LGYIIVKADPMIGARREFLDPVEMALFNADVLKVLAGTGAVRL 152 (277)
T ss_pred CcEEEEecCccccchhhccCHHHHHHhhhhHHHHHHhhhHHHH
Confidence 4456665543 3332232 223357788889988888764
No 318
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=60.58 E-value=25 Score=25.39 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=17.7
Q ss_pred HhCCCCCCCccEEEECCE-EEeccHHHHH
Q 039295 93 LLANSSAVPVPIVFIGGK-LIGAMDRVMA 120 (139)
Q Consensus 93 ~~g~~~~~~vP~Ifi~g~-~iGG~~~l~~ 120 (139)
..|... +|+++|||+ .+.|..+...
T Consensus 170 ~~gv~G---~Pt~vv~g~~~~~G~~~~~~ 195 (201)
T cd03024 170 QLGISG---VPFFVFNGKYAVSGAQPPEV 195 (201)
T ss_pred HCCCCc---CCEEEECCeEeecCCCCHHH
Confidence 347766 999999987 4567665433
No 319
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=58.11 E-value=55 Score=26.57 Aligned_cols=88 Identities=9% Similarity=0.109 Sum_probs=60.2
Q ss_pred CccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEE----------ecCCCC-hHHHHHHHHHHhCCCCC
Q 039295 31 REEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYE----------LDHDPR-GADIERVLMRLLANSSA 99 (139)
Q Consensus 31 ~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~----------vd~~~~-~~~~~~~L~~~~g~~~~ 99 (139)
+-.+.+++.++++.+-+.||+-.++..+..+..+.++++||+.... +...|. ...+.+ +.+.+|+.+
T Consensus 49 sf~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~i~~~p~~~~a~~~-~i~~~~wk~- 126 (371)
T cd06388 49 SFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLTSFCSALHISLITPSFPTEGESQFVLQLRPSLRGALLS-LLDHYEWNR- 126 (371)
T ss_pred hhHHHHHHHHHHhCCceEEEecCCHHHHHHHHHHhhCCCCCeeecCccccCCCceEEEeChhhhhHHHH-HHHhcCceE-
Confidence 4567778888899999999999999999999999999999864322 222222 122222 445568887
Q ss_pred CCccEEEECCEEEeccHHHHHHH
Q 039295 100 VPVPIVFIGGKLIGAMDRVMASH 122 (139)
Q Consensus 100 ~~vP~Ifi~g~~iGG~~~l~~l~ 122 (139)
+=.||....-++..+.+.+..
T Consensus 127 --vaiiYd~~~~~~~lq~l~~~~ 147 (371)
T cd06388 127 --FVFLYDTDRGYSILQAIMEKA 147 (371)
T ss_pred --EEEEecCCccHHHHHHHHHhh
Confidence 777786566556555554433
No 320
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=56.35 E-value=9.2 Score=27.43 Aligned_cols=27 Identities=7% Similarity=-0.069 Sum_probs=19.0
Q ss_pred EEEEEcCCChhHHHHHHHHh----hCCCCCe
Q 039295 47 VVIFSVSSCCMCHAVKRLFC----GMGVNPT 73 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~----~~~v~~~ 73 (139)
|.+|+...||||--+...|+ +++++++
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~ 31 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVR 31 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeE
Confidence 46899999999976655554 4455443
No 321
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=55.23 E-value=19 Score=26.06 Aligned_cols=42 Identities=7% Similarity=0.041 Sum_probs=30.4
Q ss_pred cCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHH
Q 039295 52 VSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRL 93 (139)
Q Consensus 52 ~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~ 93 (139)
.++=+++.+++..|+++|++|+..-+..+.....+.+.+.+.
T Consensus 10 ~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~ 51 (150)
T PF00731_consen 10 TSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEY 51 (150)
T ss_dssp GGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHh
Confidence 457899999999999999999888888777766655555443
No 322
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=53.22 E-value=70 Score=24.84 Aligned_cols=100 Identities=17% Similarity=0.300 Sum_probs=59.6
Q ss_pred CCCccHHHHHHHHhcC--CcEEEEEcC--CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccE
Q 039295 29 MPREEPMEKVARVASE--SAVVIFSVS--SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPI 104 (139)
Q Consensus 29 ~~~~~~~~~~~~~i~~--~~Vvif~~~--~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~ 104 (139)
|-....+..+.+.++. ..++||..| .-|--.+++.+|.+.+++..+ |...| +..++++|.+. | +=.
T Consensus 43 M~Pe~veaav~~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~Paii--igDaP-g~~vkdeleeq-G------lGY 112 (277)
T COG1927 43 MDPECVEAAVTEMLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAII--IGDAP-GLKVKDELEEQ-G------LGY 112 (277)
T ss_pred cChHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEE--ecCCc-cchhHHHHHhc-C------CeE
Confidence 4334445555555544 368899876 467778999999999888544 34444 45566677664 2 445
Q ss_pred EEECCE-EEeccHHHH----HHHHcCChHHHHHhcCccC
Q 039295 105 VFIGGK-LIGAMDRVM----ASHINGTLVPLLKEAGALW 138 (139)
Q Consensus 105 Ifi~g~-~iGG~~~l~----~l~~~g~L~~~L~~~g~~~ 138 (139)
|.|+-. .||.-.+++ -..-+..+.++|...|+++
T Consensus 113 Iivk~DpmiGArREFLDPvEMA~fNaDv~kVLa~tGa~R 151 (277)
T COG1927 113 IIVKADPMIGARREFLDPVEMASFNADVMKVLAATGAFR 151 (277)
T ss_pred EEecCCcccchhhhhcCHHHHHhhhhHHHHHHHhccHHH
Confidence 555543 333332322 2223456677777777765
No 323
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=51.00 E-value=17 Score=30.93 Aligned_cols=38 Identities=8% Similarity=-0.047 Sum_probs=25.6
Q ss_pred CCccHHHHHHHHhcC----CcEEEEEcCCChhHHHHHHHHhhC
Q 039295 30 PREEPMEKVARVASE----SAVVIFSVSSCCMCHAVKRLFCGM 68 (139)
Q Consensus 30 ~~~~~~~~~~~~i~~----~~Vvif~~~~Cp~C~~ak~~L~~~ 68 (139)
.+.+.++.++++.+. -.+++|.. .|++|..++.+|+++
T Consensus 2 ~~~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (517)
T PRK15317 2 LDANLKTQLKQYLELLERPIELVASLD-DSEKSAELKELLEEI 43 (517)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEEEeC-CCchHHHHHHHHHHH
Confidence 344555555655532 24555655 899999999999875
No 324
>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G
Probab=50.88 E-value=1.2e+02 Score=24.53 Aligned_cols=43 Identities=9% Similarity=0.240 Sum_probs=35.2
Q ss_pred ccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCCCeE
Q 039295 32 EEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTV 74 (139)
Q Consensus 32 ~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~ 74 (139)
..+...+.+++...-+.||+..+++.|..+..++++.++++..
T Consensus 49 ~~a~~~~c~Li~~gV~AI~G~~~s~~~~av~~i~~~~~IP~Is 91 (363)
T cd06381 49 FDAVQEACDLMNQGILALVTSTGCASAIALQSLTDAMHIPHLF 91 (363)
T ss_pred HHHHHHHHHHHhcCcEEEEecCChhHHHHHHHHhhCCCCCEEE
Confidence 3566677778878667889999999999999999999988643
No 325
>PRK00766 hypothetical protein; Provisional
Probab=48.29 E-value=32 Score=25.92 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=29.9
Q ss_pred CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccH--HHHHHHH
Q 039295 69 GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMD--RVMASHI 123 (139)
Q Consensus 69 ~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~--~l~~l~~ 123 (139)
|+-+..+.+|-.+....+.+.+........ +=.|+++|--+|||+ |+..+++
T Consensus 42 Gv~~~~itvdG~DaT~~i~~mv~~~~~r~~---i~~V~L~Git~agFNvvD~~~l~~ 95 (194)
T PRK00766 42 GVLSRWITVDGLDATEAIIEMVNSSRHKGQ---LRVIMLDGITYGGFNVVDIEELYR 95 (194)
T ss_pred eEEEEEEEECCccHHHHHHHHHHhcccccc---eEEEEECCEeeeeeEEecHHHHHH
Confidence 344567777777665554333332111233 667788888888888 4444443
No 326
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=48.22 E-value=11 Score=27.34 Aligned_cols=20 Identities=30% Similarity=0.374 Sum_probs=15.1
Q ss_pred EEEEEcCCChhHHHHHHHHh
Q 039295 47 VVIFSVSSCCMCHAVKRLFC 66 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~ 66 (139)
|.+|+..-||||--+...|.
T Consensus 1 I~~~~D~~cP~cyl~~~~l~ 20 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLE 20 (201)
T ss_pred CeEEecCcCccHHHHHHHHH
Confidence 56899999999985554443
No 327
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=47.39 E-value=1.3e+02 Score=23.17 Aligned_cols=89 Identities=13% Similarity=0.149 Sum_probs=54.8
Q ss_pred CCCCccHHHHHHHHhcCCcEEEEEcC------CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCC
Q 039295 28 NMPREEPMEKVARVASESAVVIFSVS------SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVP 101 (139)
Q Consensus 28 ~~~~~~~~~~~~~~i~~~~Vvif~~~------~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~ 101 (139)
..-.++....+.+.+..++-++|.-+ +-.|..+++..|.++|++...+++. .+ ..+.| . .
T Consensus 14 ~~~l~~~~~~~~~~~~~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~--~d---~~~~l---~---~--- 79 (233)
T PRK05282 14 TGYLEHALPLIAELLAGRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRV--AD---PVAAI---E---N--- 79 (233)
T ss_pred CchHHHHHHHHHHHHcCCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccc--hh---hHHHH---h---c---
Confidence 33345667777777765554555432 2447889999999999875554433 21 11122 1 2
Q ss_pred ccEEEECCEEEeccHHHHHHHHcCChHHHHHh
Q 039295 102 VPIVFIGGKLIGAMDRVMASHINGTLVPLLKE 133 (139)
Q Consensus 102 vP~Ifi~g~~iGG~~~l~~l~~~g~L~~~L~~ 133 (139)
.=.|||.| |..-.+.+..+...|.+.|++
T Consensus 80 ad~I~v~G---Gnt~~l~~~l~~~gl~~~l~~ 108 (233)
T PRK05282 80 AEAIFVGG---GNTFQLLKQLYERGLLAPIRE 108 (233)
T ss_pred CCEEEECC---ccHHHHHHHHHHCCcHHHHHH
Confidence 45788887 666667766666667777764
No 328
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=47.19 E-value=33 Score=27.92 Aligned_cols=52 Identities=23% Similarity=0.462 Sum_probs=34.6
Q ss_pred EEEEEc----CCChhHHHHHHHHhhC------------C--CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC
Q 039295 47 VVIFSV----SSCCMCHAVKRLFCGM------------G--VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG 108 (139)
Q Consensus 47 Vvif~~----~~Cp~C~~ak~~L~~~------------~--v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~ 108 (139)
|++|++ ..|+-|+.+.+.+.-. + +=|..+|+|+.+ .+.+..+..+ +|.+++=
T Consensus 64 IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p-------~~Fq~l~ln~---~P~l~~f 133 (331)
T KOG2603|consen 64 IVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESP-------QVFQQLNLNN---VPHLVLF 133 (331)
T ss_pred EEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccH-------HHHHHhcccC---CCeEEEe
Confidence 777886 3799999887665421 1 124566666654 3555668888 9999763
No 329
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=45.93 E-value=81 Score=25.48 Aligned_cols=86 Identities=8% Similarity=0.090 Sum_probs=56.2
Q ss_pred CccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEE----------ecCCCC-hHHHHHHHHHHhCCCCC
Q 039295 31 REEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYE----------LDHDPR-GADIERVLMRLLANSSA 99 (139)
Q Consensus 31 ~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~----------vd~~~~-~~~~~~~L~~~~g~~~~ 99 (139)
+-.+.+++..+++.+-+.||+-..+..+..+..+.+++++|+.... +...|+ ...+. .+.+.+|+++
T Consensus 43 sf~~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i~~~~~IP~I~~~~~~~~~~~f~~~~~p~~~~ai~-d~i~~~~wk~- 120 (370)
T cd06389 43 SFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSFCGTLHVSFITPSFPTDGTHPFVIQMRPDLKGALL-SLIEYYQWDK- 120 (370)
T ss_pred hHHHHHHHHHHhhcCcEEEEecCCHHHHHHHHHhhccCCCCeeeecCCCCCCCceEEEecchhhhHHH-HHHHhcCCcE-
Confidence 3466778888888888999999999999999999999999875422 122222 22222 3344568887
Q ss_pred CCccEEEECCEEEeccHHHHH
Q 039295 100 VPVPIVFIGGKLIGAMDRVMA 120 (139)
Q Consensus 100 ~~vP~Ifi~g~~iGG~~~l~~ 120 (139)
+=.|+-+..-.+..+++.+
T Consensus 121 --vailYdsd~gl~~lq~l~~ 139 (370)
T cd06389 121 --FAYLYDSDRGLSTLQAVLD 139 (370)
T ss_pred --EEEEecCchHHHHHHHHHH
Confidence 7777764433333444433
No 330
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=45.75 E-value=68 Score=21.70 Aligned_cols=73 Identities=15% Similarity=0.188 Sum_probs=40.9
Q ss_pred CCCCCccHHHHHHHHhcCCcEEEE-EcCCChhHHHHHHHHhhCCCCC-eEEEecCCCChHHHHHHHHHHhCCCCCCCccE
Q 039295 27 GNMPREEPMEKVARVASESAVVIF-SVSSCCMCHAVKRLFCGMGVNP-TVYELDHDPRGADIERVLMRLLANSSAVPVPI 104 (139)
Q Consensus 27 ~~~~~~~~~~~~~~~i~~~~Vvif-~~~~Cp~C~~ak~~L~~~~v~~-~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~ 104 (139)
.+|+....++.++++-+..-+++| +-..- .-....+.+.++..+- ....+..+| .+.+.++... ||+
T Consensus 6 ~SMP~~~L~~l~~~a~~~~~~~V~RG~~~g-~~~~t~~~~~~l~~~~~~~~~v~IdP-------~~F~~y~I~~---VPa 74 (113)
T PF09673_consen 6 FSMPDASLRNLLKQAERAGVVVVFRGFPDG-SFKPTAKAIQELLRKDDPCPGVQIDP-------RLFRQYNITA---VPA 74 (113)
T ss_pred CCCCHHHHHHHHHHHHhCCcEEEEECCCCC-CHHHHHHHHHHHhhccCCCcceeECh-------hHHhhCCceE---cCE
Confidence 467777788888887766533333 32322 3333444444332221 113444445 4777889998 999
Q ss_pred EEECCE
Q 039295 105 VFIGGK 110 (139)
Q Consensus 105 Ifi~g~ 110 (139)
+.+-..
T Consensus 75 ~V~~~~ 80 (113)
T PF09673_consen 75 FVVVKD 80 (113)
T ss_pred EEEEcC
Confidence 966443
No 331
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.58 E-value=32 Score=26.62 Aligned_cols=59 Identities=17% Similarity=0.222 Sum_probs=45.4
Q ss_pred CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHHHHHHHc
Q 039295 53 SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMASHIN 124 (139)
Q Consensus 53 ~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l~~~ 124 (139)
+....|-.++.+|+--+++|.++.-+..+ ...-.| . +|-+-+|...+.+|..+++..+.
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~Nae--------fmSP~G--~---vPllr~g~~~~aef~pIV~fVea 90 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRANAE--------FMSPGG--K---VPLLRIGKTLFAEFEPIVDFVEA 90 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecCCcc--------ccCCCC--C---CceeeecchhhhhhhHHHHHHHH
Confidence 56788999999999999999887554432 211112 4 99999999999999999887654
No 332
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=44.56 E-value=26 Score=29.80 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=24.8
Q ss_pred CccHHHHHHHHhcC----CcEEEEEcCCChhHHHHHHHHhhC
Q 039295 31 REEPMEKVARVASE----SAVVIFSVSSCCMCHAVKRLFCGM 68 (139)
Q Consensus 31 ~~~~~~~~~~~i~~----~~Vvif~~~~Cp~C~~ak~~L~~~ 68 (139)
+.+.++.++++... -.+++|.. .|++|.+++.+|+++
T Consensus 3 ~~~~~~~l~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~ 43 (515)
T TIGR03140 3 DQSLLAQLKSYLASLENPVTLVLSAG-SHEKSKELLELLDEI 43 (515)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEEeC-CCchhHHHHHHHHHH
Confidence 44555555555432 23445655 799999999999875
No 333
>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=44.34 E-value=1.5e+02 Score=24.09 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=58.5
Q ss_pred ccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEE----------EecCCCChHHHHHHHHHHhCCCCCCC
Q 039295 32 EEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVY----------ELDHDPRGADIERVLMRLLANSSAVP 101 (139)
Q Consensus 32 ~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~----------~vd~~~~~~~~~~~L~~~~g~~~~~~ 101 (139)
-++.+++..+++..-+.||+-+.|..-..+..+.+.+.||+... -|...|+.......+.+.+|++.
T Consensus 43 f~~~~~~C~~~~~gV~AI~Gp~s~~~a~~v~sic~~~~vP~i~~~~~~~~~~~~~i~~~P~~~~Ai~diI~~~~W~~--- 119 (364)
T cd06390 43 FEMTYTFCSQFSKGVYAIFGFYDRKTVNMLTSFCGALHVCFITPSFPVDTSNQFVLQLRPELQDALISVIEHYKWQK--- 119 (364)
T ss_pred HHHHHHHHHHhhcCceEEEccCChhHHHHHHHhhcCCCCCceecCCCCCCCCceEEEeChhHHHHHHHHHHHcCCcE---
Confidence 45667777888888899999988888888888889999886532 12223332222234455578888
Q ss_pred ccEEEECCEEEeccHHHHHH
Q 039295 102 VPIVFIGGKLIGAMDRVMAS 121 (139)
Q Consensus 102 vP~Ifi~g~~iGG~~~l~~l 121 (139)
+=.||.++.-.++...+.+.
T Consensus 120 v~iIYd~d~g~~~lq~l~~~ 139 (364)
T cd06390 120 FVYIYDADRGLSVLQKVLDT 139 (364)
T ss_pred EEEEEeCCccHHHHHHHHHh
Confidence 88888766555555554443
No 334
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=44.04 E-value=65 Score=22.64 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=39.0
Q ss_pred CCCCCccHHHHHHHHhcCCc-EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE
Q 039295 27 GNMPREEPMEKVARVASESA-VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV 105 (139)
Q Consensus 27 ~~~~~~~~~~~~~~~i~~~~-Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I 105 (139)
.+|+....++.++++-+-.- +++=+-..-.+ +...+.+.++..+-....+..+| .+.+.++... ||.+
T Consensus 7 ~SMP~~~Lk~l~~~a~~~g~~~VlRG~~~~~~-~~T~~~i~~L~~~~~~~~v~IdP-------~lF~~f~I~~---VPa~ 75 (130)
T TIGR02742 7 FSMPEPLLKQLLDQAEALGAPLVIRGLLDNGF-KATATRIQSLIKDGGKSGVQIDP-------QWFKQFDITA---VPAF 75 (130)
T ss_pred cCCCHHHHHHHHHHHHHhCCeEEEeCCCCCCH-HHHHHHHHHHHhcCCCCcEEECh-------HHHhhcCceE---cCEE
Confidence 46777778888888776553 33322232222 33333333332111113444455 5778889998 9998
Q ss_pred EEC
Q 039295 106 FIG 108 (139)
Q Consensus 106 fi~ 108 (139)
.+-
T Consensus 76 V~~ 78 (130)
T TIGR02742 76 VVV 78 (130)
T ss_pred EEE
Confidence 653
No 335
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=43.17 E-value=39 Score=22.11 Aligned_cols=33 Identities=6% Similarity=-0.004 Sum_probs=27.0
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecC
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDH 79 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~ 79 (139)
|.+++.++|+=..-++.+.+.++.++..++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~ 33 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSE 33 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccc
Confidence 578999999999999999999987765555433
No 336
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=42.85 E-value=23 Score=21.20 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=28.1
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCE
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGK 110 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~ 110 (139)
+.+|+...=.-+..++.+|++.||++...+-....- .-..|... .+.|+|..+
T Consensus 1 ~~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~~~~~--------~g~~g~~~---~~~v~V~~~ 53 (67)
T PF09413_consen 1 KKLYTAGDPIEAELIKGLLEENGIPAFVKNEHMSGY--------AGEPGTGG---QVEVYVPEE 53 (67)
T ss_dssp EEEEEE--HHHHHHHHHHHHHTT--EE--S----SS-----------S--SS---SEEEEEEGG
T ss_pred CEEEEcCCHHHHHHHHHHHHhCCCcEEEECCccchh--------hcccCccC---ceEEEECHH
Confidence 457777777778899999999999988775554431 11134444 588888763
No 337
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=41.83 E-value=75 Score=20.77 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCCCCCCccEEEECCEEEeccH
Q 039295 84 ADIERVLMRLLANSSAVPVPIVFIGGKLIGAMD 116 (139)
Q Consensus 84 ~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~ 116 (139)
....+.+++...... +|...|+....|-.+
T Consensus 61 ~~~~~~i~~~~~~~~---ipv~~I~~~~Y~~md 90 (95)
T TIGR00853 61 AYMLPDLKKETDKKG---IPVEVINGAQYGKLT 90 (95)
T ss_pred HHHHHHHHHHhhhcC---CCEEEeChhhcccCC
Confidence 344566777766555 899999988776654
No 338
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=41.72 E-value=74 Score=20.73 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCCCCCCccEEEECCEEEeccH
Q 039295 84 ADIERVLMRLLANSSAVPVPIVFIGGKLIGAMD 116 (139)
Q Consensus 84 ~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~ 116 (139)
....+.+++...... +|...|+....|-.+
T Consensus 57 ~~~~~~i~~~~~~~~---~pv~~I~~~~Y~~~d 86 (96)
T cd05564 57 RYMLDEVKKKAAEYG---IPVAVIDMMDYGMMN 86 (96)
T ss_pred HHHHHHHHHHhccCC---CcEEEcChHhcccCC
Confidence 334456666555556 999999998887655
No 339
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=41.29 E-value=61 Score=26.53 Aligned_cols=72 Identities=19% Similarity=0.230 Sum_probs=43.3
Q ss_pred CCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCC--CChHHHHHHHHHHhCCCCCCCccEEE--E-CCEEEeccHHH
Q 039295 44 ESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHD--PRGADIERVLMRLLANSSAVPVPIVF--I-GGKLIGAMDRV 118 (139)
Q Consensus 44 ~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~--~~~~~~~~~L~~~~g~~~~~~vP~If--i-~g~~iGG~~~l 118 (139)
..+.++|....+.||. .+...-+|+....+.+|.+ -+..++++.+.+...... +|.++ . +....|.+|++
T Consensus 139 ~~~~~i~~s~~aH~S~--~Kaa~~lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~---~p~~vvat~Gtt~~Ga~D~l 213 (373)
T PF00282_consen 139 IPKPVIYVSEQAHYSI--EKAARILGLGVRKIPTDEDGRMDIEALEKALEKDIANGK---TPFAVVATAGTTNTGAIDPL 213 (373)
T ss_dssp CSSEEEEEETTS-THH--HHHHHHTTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTE---EEEEEEEEBS-TTTSBB-SH
T ss_pred ccccccccccccccHH--HHhcceeeeEEEEecCCcchhhhHHHhhhhhcccccccc---cceeeeccCCCcccccccCH
Confidence 3578899999999986 5666667777666666663 234556666666554444 67433 2 33466888887
Q ss_pred HH
Q 039295 119 MA 120 (139)
Q Consensus 119 ~~ 120 (139)
.+
T Consensus 214 ~~ 215 (373)
T PF00282_consen 214 EE 215 (373)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 340
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=41.01 E-value=44 Score=23.99 Aligned_cols=29 Identities=14% Similarity=0.399 Sum_probs=25.4
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHhhCCCC
Q 039295 43 SESAVVIFSVSSCCMCHAVKRLFCGMGVN 71 (139)
Q Consensus 43 ~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~ 71 (139)
+..+|++|-.++|..+..+-..|..+|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRALAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHhcCCc
Confidence 45689999999999999999999999865
No 341
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=40.17 E-value=1.5e+02 Score=21.98 Aligned_cols=60 Identities=22% Similarity=0.168 Sum_probs=36.1
Q ss_pred CCCccHHHHHHHHhcCC-cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHH
Q 039295 29 MPREEPMEKVARVASES-AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRL 93 (139)
Q Consensus 29 ~~~~~~~~~~~~~i~~~-~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~ 93 (139)
..+++..+.+.++-... +++|.+. ..=.++..+...++++|-..= .-|.+..++.+++++
T Consensus 46 ~~tpe~~~W~~e~k~~gi~v~vvSN---n~e~RV~~~~~~l~v~fi~~A--~KP~~~~fr~Al~~m 106 (175)
T COG2179 46 DATPELRAWLAELKEAGIKVVVVSN---NKESRVARAAEKLGVPFIYRA--KKPFGRAFRRALKEM 106 (175)
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEeC---CCHHHHHhhhhhcCCceeecc--cCccHHHHHHHHHHc
Confidence 34566778877776553 5555554 233567777777777765442 235555666666654
No 342
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=39.77 E-value=1.5e+02 Score=21.81 Aligned_cols=86 Identities=20% Similarity=0.252 Sum_probs=47.7
Q ss_pred HHHHHHHh-cCCcEEEEEcC---CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCE
Q 039295 35 MEKVARVA-SESAVVIFSVS---SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGK 110 (139)
Q Consensus 35 ~~~~~~~i-~~~~Vvif~~~---~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~ 110 (139)
...+.... ...+|.+.... .+.++....+.|+++|.....+.+-...+..++.+.| . . .-.||+.|
T Consensus 19 ~~~~~~~~~~~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l----~--~---ad~I~~~G- 88 (210)
T cd03129 19 QDFLARAGGAGARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARL----L--E---ADGIFVGG- 88 (210)
T ss_pred HHHHHHcCCCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHH----h--h---CCEEEEcC-
Confidence 33344443 33455555433 3688999999999999886655543322323322222 1 2 56788887
Q ss_pred EEeccHHHHHHHHcC-ChHHHHH
Q 039295 111 LIGAMDRVMASHING-TLVPLLK 132 (139)
Q Consensus 111 ~iGG~~~l~~l~~~g-~L~~~L~ 132 (139)
|....+....++- -+..+++
T Consensus 89 --G~~~~~~~~l~~t~~~~~i~~ 109 (210)
T cd03129 89 --GNQLRLLSVLRETPLLDAILK 109 (210)
T ss_pred --CcHHHHHHHHHhCChHHHHHH
Confidence 6656655554444 4444433
No 343
>KOG2454 consensus Betaine aldehyde dehydrogenase [Energy production and conversion]
Probab=39.65 E-value=51 Score=27.96 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=30.5
Q ss_pred HHHHhcCCcEEEEEc-----CCChhHHHHHHHHhhCCCCCeEEEe
Q 039295 38 VARVASESAVVIFSV-----SSCCMCHAVKRLFCGMGVNPTVYEL 77 (139)
Q Consensus 38 ~~~~i~~~~Vvif~~-----~~Cp~C~~ak~~L~~~~v~~~~~~v 77 (139)
+..+...|-|||=.. ++|-||+-+++.|...|.+.+.+++
T Consensus 210 iaAlFsGNaIVvK~SE~~~WS~~fy~e~ir~~L~a~g~~p~LVq~ 254 (583)
T KOG2454|consen 210 IAALFSGNAIVVKVSEHASWSGCFYFEIIRAALAAVGAPPNLVQV 254 (583)
T ss_pred HHHHhcCCeEEEEeecceeeehhhHHHHHHHHHHHcCCCcchhhe
Confidence 445567777877544 6899999999999999988665554
No 344
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=39.01 E-value=1.3e+02 Score=27.12 Aligned_cols=69 Identities=17% Similarity=0.358 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCC-cEEE-EEcCCChhHHHH-HHHHhh------CCCCCeEEEecCC--CChHHHH-HHHHHHhCCCCCCC
Q 039295 34 PMEKVARVASES-AVVI-FSVSSCCMCHAV-KRLFCG------MGVNPTVYELDHD--PRGADIE-RVLMRLLANSSAVP 101 (139)
Q Consensus 34 ~~~~~~~~i~~~-~Vvi-f~~~~Cp~C~~a-k~~L~~------~~v~~~~~~vd~~--~~~~~~~-~~L~~~~g~~~~~~ 101 (139)
-++.+.++-+.+ +|.+ .+.++|.+|+-. +.-|.+ ++-.|..+.||.. |+-..+- +..+.++|+..
T Consensus 32 ~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GG--- 108 (667)
T COG1331 32 GEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGG--- 108 (667)
T ss_pred CHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCC---
Confidence 356666666655 5555 567899999843 333322 3444777788775 5544443 33444556665
Q ss_pred ccEE
Q 039295 102 VPIV 105 (139)
Q Consensus 102 vP~I 105 (139)
-|..
T Consensus 109 WPLt 112 (667)
T COG1331 109 WPLT 112 (667)
T ss_pred Ccee
Confidence 6743
No 345
>PTZ00494 tuzin-like protein; Provisional
Probab=39.00 E-value=1.3e+02 Score=26.42 Aligned_cols=71 Identities=21% Similarity=0.219 Sum_probs=49.3
Q ss_pred cHHHHHHHHh-----cCCcEEEEEc-CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 33 EPMEKVARVA-----SESAVVIFSV-SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 33 ~~~~~~~~~i-----~~~~Vvif~~-~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
.-+..+++++ .-++|++|+. .+|.-|.-.+......+++..++||...+|... .+.+..| ||.|-
T Consensus 378 ~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE~~paV~VDVRg~EDtLr---sVVKALg------V~nve 448 (664)
T PTZ00494 378 DEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVEGVALVHVDVGGTEDTLR---SVVRALG------VSNVE 448 (664)
T ss_pred hHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHcCCCeEEEEecCCcchHH---HHHHHhC------CCChh
Confidence 3444455544 2346888876 589999999999999999999999988887532 2223223 77777
Q ss_pred ECCEEE
Q 039295 107 IGGKLI 112 (139)
Q Consensus 107 i~g~~i 112 (139)
+.|.++
T Consensus 449 ~CGDlL 454 (664)
T PTZ00494 449 VCGDLL 454 (664)
T ss_pred hhccHH
Confidence 777543
No 346
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=38.89 E-value=33 Score=22.90 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=13.4
Q ss_pred ccEEEECCEEEeccHH
Q 039295 102 VPIVFIGGKLIGAMDR 117 (139)
Q Consensus 102 vP~Ifi~g~~iGG~~~ 117 (139)
-|.|..+++.+-||++
T Consensus 90 RPIi~~~~~~~iGf~~ 105 (105)
T cd03035 90 RPVLETGGKVLVGFSE 105 (105)
T ss_pred cceEEeCCEEEEeeCC
Confidence 5999999998888863
No 347
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=38.75 E-value=47 Score=22.59 Aligned_cols=69 Identities=16% Similarity=0.167 Sum_probs=40.8
Q ss_pred CCcEEEEEcCCC---hhHHHHHHHHhh----CCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE--EECCEEEec
Q 039295 44 ESAVVIFSVSSC---CMCHAVKRLFCG----MGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIV--FIGGKLIGA 114 (139)
Q Consensus 44 ~~~Vvif~~~~C---p~C~~ak~~L~~----~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I--fi~g~~iGG 114 (139)
....++|....| |-+..+--+|-+ .+-.+..--++ + +...+|...+|... .|.+ |-+|+++|.
T Consensus 26 ~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~---~~e~~L~~r~gv~~---~PaLvf~R~g~~lG~ 97 (107)
T PF07449_consen 26 PGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--R---AAERALAARFGVRR---WPALVFFRDGRYLGA 97 (107)
T ss_dssp CSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--H---HHHHHHHHHHT-TS---SSEEEEEETTEEEEE
T ss_pred CCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--c---hhHHHHHHHhCCcc---CCeEEEEECCEEEEE
Confidence 445777777654 444443334444 33333333344 2 22358999999988 9987 779999997
Q ss_pred cHHHHH
Q 039295 115 MDRVMA 120 (139)
Q Consensus 115 ~~~l~~ 120 (139)
...+..
T Consensus 98 i~gi~d 103 (107)
T PF07449_consen 98 IEGIRD 103 (107)
T ss_dssp EESSST
T ss_pred ecCeec
Confidence 765543
No 348
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.65 E-value=1e+02 Score=19.86 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=27.9
Q ss_pred HHHHHHHhcCCcEEEEEcCCChh--HHHHHHHHhhCCCCCeEE
Q 039295 35 MEKVARVASESAVVIFSVSSCCM--CHAVKRLFCGMGVNPTVY 75 (139)
Q Consensus 35 ~~~~~~~i~~~~Vvif~~~~Cp~--C~~ak~~L~~~~v~~~~~ 75 (139)
...+...+...++||+....+.+ +..+++.-++.++++.+.
T Consensus 39 ~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 39 ASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred hhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 34567777777777777666554 467777777777776655
No 349
>PF07908 D-aminoacyl_C: D-aminoacylase, C-terminal region; InterPro: IPR012855 D-aminoacylase (Q9AGH8 from SWISSPROT, 3.5.1.81 from EC) hydrolyses a wide variety of N-acyl derivatives of neutral D-amino acids, in a zinc-dependent manner. The enzyme is composed of a small beta-barrel domain and a larger catalytic alpha/beta-barrel that contains a short alpha/beta insert. The overall structure shares significant similarity to the alpha/beta-barrel amidohydrolase superfamily, in which the beta-strands in both barrels superimpose well []. The C-terminal region featured in this entry forms part of the beta-barrel domain, together with a short N-terminal segment. This domain does not seem to contribute to the substrate-binding site or to be involved in the catalytic process.; GO: 0008270 zinc ion binding, 0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides; PDB: 3GIQ_B 3GIP_B 1V4Y_A 1M7J_A 1RK5_A 1RJP_A 1RJR_A 1RJQ_A 1RK6_A 1V51_A.
Probab=38.64 E-value=25 Score=20.16 Aligned_cols=16 Identities=19% Similarity=0.414 Sum_probs=12.7
Q ss_pred CCccEEEECCEEEecc
Q 039295 100 VPVPIVFIGGKLIGAM 115 (139)
Q Consensus 100 ~~vP~Ifi~g~~iGG~ 115 (139)
.++..|||||+.+-.-
T Consensus 18 ~GI~~V~VNG~~vv~~ 33 (48)
T PF07908_consen 18 EGIDYVFVNGQIVVED 33 (48)
T ss_dssp BSEEEEEETTEEEECT
T ss_pred CCEEEEEECCEEEEEC
Confidence 4599999999988543
No 350
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=38.26 E-value=1.4e+02 Score=24.52 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=16.7
Q ss_pred EEEEEcCCChhHH----HHHHHHhhCCCCCeEEEecCC
Q 039295 47 VVIFSVSSCCMCH----AVKRLFCGMGVNPTVYELDHD 80 (139)
Q Consensus 47 Vvif~~~~Cp~C~----~ak~~L~~~~v~~~~~~vd~~ 80 (139)
|+.++...|.... .+++.|++.|+|+-.++.|-.
T Consensus 317 VI~~~~kfC~~~~~e~~~lk~~l~e~GIP~L~iE~D~~ 354 (377)
T TIGR03190 317 AIFLQQKFCDPHEGDYPDLKRHLEANGIPTLFLEFDIT 354 (377)
T ss_pred EEEecccCCCcchhhhHHHHHHHHHCCCCEEEEecCCC
Confidence 4445555554432 344555555555555555444
No 351
>PRK04195 replication factor C large subunit; Provisional
Probab=38.08 E-value=2.4e+02 Score=23.86 Aligned_cols=47 Identities=9% Similarity=0.102 Sum_probs=33.8
Q ss_pred cHHHHHHHHhc-------CCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecC
Q 039295 33 EPMEKVARVAS-------ESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDH 79 (139)
Q Consensus 33 ~~~~~~~~~i~-------~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~ 79 (139)
+..+.++..+. ...+.+|+-++|+=..-++.+.++++.++.+++...
T Consensus 21 ~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 21 KAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 34455555443 345888999999999999999999987665555443
No 352
>PRK10670 hypothetical protein; Provisional
Probab=36.91 E-value=69 Score=22.96 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=29.7
Q ss_pred HHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 60 AVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 60 ~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
.+.++|++.+++|+...++..+......+++.+..|......+-++++
T Consensus 3 ~~~~~L~~~~i~y~~~~~~h~~~~~~~~~~~a~~lgv~~~~i~Ktlv~ 50 (159)
T PRK10670 3 PAVKLLEKNKISFTLHTYEHDPAETNFGDEVVRKLGLNADQVYKTLLV 50 (159)
T ss_pred HHHHHHHHCCCCeEEEeeccCCcccchHHHHHHHhCCCHHHeEEEEEE
Confidence 578999999999999776655432111135666667653222566655
No 353
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=36.82 E-value=62 Score=19.17 Aligned_cols=43 Identities=5% Similarity=-0.014 Sum_probs=23.8
Q ss_pred ccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEE
Q 039295 32 EEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVY 75 (139)
Q Consensus 32 ~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~ 75 (139)
..++..++++-....+.|.+...+ ....+.++++..|..+...
T Consensus 14 ~~~~~~l~~l~~g~~l~v~~d~~~-~~~~i~~~~~~~g~~~~~~ 56 (69)
T cd00291 14 LKTKKALEKLKSGEVLEVLLDDPG-AVEDIPAWAKETGHEVLEV 56 (69)
T ss_pred HHHHHHHhcCCCCCEEEEEecCCc-HHHHHHHHHHHcCCEEEEE
Confidence 344555555433334555544444 5677777788777765433
No 354
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=36.25 E-value=1.3e+02 Score=21.64 Aligned_cols=28 Identities=11% Similarity=0.377 Sum_probs=20.7
Q ss_pred CcEEEEE-cCCChhHHHH-HHHHhhCCCCC
Q 039295 45 SAVVIFS-VSSCCMCHAV-KRLFCGMGVNP 72 (139)
Q Consensus 45 ~~Vvif~-~~~Cp~C~~a-k~~L~~~~v~~ 72 (139)
..++||. ++-|.+|... ..+.+++|++.
T Consensus 100 ~~~tm~Vdr~vC~~C~~~i~~~a~~lGl~~ 129 (146)
T PF14437_consen 100 RSMTMYVDRDVCGYCGGDIPSMAEKLGLKS 129 (146)
T ss_pred CeEEEEECcccchHHHHHHHHHHHHcCCCe
Confidence 3566765 5789999855 66668899984
No 355
>cd04336 YeaK YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.
Probab=36.03 E-value=1.1e+02 Score=21.33 Aligned_cols=46 Identities=7% Similarity=0.054 Sum_probs=29.4
Q ss_pred HHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC
Q 039295 59 HAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG 108 (139)
Q Consensus 59 ~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~ 108 (139)
.++.++|++.+++|..++.+...... ++.+..|......+-++++.
T Consensus 2 ~~v~~~L~~~~i~y~~~~~~~~~t~~----~~a~~~~~~~~~~~Ktll~~ 47 (153)
T cd04336 2 ERLQELLNTNGARFRVLDHPPEGTSE----EVAAIRGTELGQGAKALLCK 47 (153)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCCHH----HHHHHhCCCcccceEEEEEE
Confidence 46789999999999999877655443 34455555421124555543
No 356
>TIGR00011 YbaK_EbsC ybaK/ebsC protein. This model represents the YbaK family, bacterial proteins whose full length sequence is homologous to an insertion domain in proline--tRNA ligases. The domain deacylates mischarged tRNAs. The YbaK protein of Haemophilus influenzae (HI1434), although still considered undefined in its role in vivo, likewise deacylates Ala-tRNA(Pro), but not the correctly charged Pro-tRNA(Pro). A crystallographic study of HI1434 suggests a nucleotide binding function. Previously, a member of this family was described as EbsC and was thought to be involved in cell wall metabolism.
Probab=35.36 E-value=75 Score=22.21 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=29.3
Q ss_pred HHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC
Q 039295 60 AVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG 108 (139)
Q Consensus 60 ~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~ 108 (139)
.+.++|++++++|+.++.+..+....+ +++.+..|......+-++++.
T Consensus 2 ~~~~~L~~~~i~~~~~~~~~~~~~~t~-~e~a~~~g~~~~~~~Ktlv~~ 49 (152)
T TIGR00011 2 NAIRLLDKAKIEYEVHEYEVDPDHLDG-ESAAEKLGVDPHRVFKTLVAE 49 (152)
T ss_pred HHHHHHHHcCCCcEEEEecCCCCcccH-HHHHHHhCCCHHHeEEEEEEE
Confidence 478999999999999988865432111 245555565431124455543
No 357
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=35.31 E-value=1.9e+02 Score=21.64 Aligned_cols=77 Identities=16% Similarity=0.294 Sum_probs=45.2
Q ss_pred CcEEEEEcC---CChhHHHHHHHHhhCCCC-CeEEEecCCC--ChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccHHH
Q 039295 45 SAVVIFSVS---SCCMCHAVKRLFCGMGVN-PTVYELDHDP--RGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMDRV 118 (139)
Q Consensus 45 ~~Vvif~~~---~Cp~C~~ak~~L~~~~v~-~~~~~vd~~~--~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l 118 (139)
.+|++.-.. .+.+|.+....|.++|+. ...+.++..+ +..+ +.+... . .-.||+.| |.-..+
T Consensus 30 ~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~----~~~~l~--~---ad~I~~~G---G~~~~~ 97 (217)
T cd03145 30 ARIVVIPAASEEPAEVGEEYRDVFERLGAREVEVLVIDSREAANDPE----VVARLR--D---ADGIFFTG---GDQLRI 97 (217)
T ss_pred CcEEEEeCCCcChhHHHHHHHHHHHHcCCceeEEeccCChHHcCCHH----HHHHHH--h---CCEEEEeC---CcHHHH
Confidence 356555443 388899999999999985 4555555321 2222 222221 2 56788877 555556
Q ss_pred HHHHHcCChHHHHHh
Q 039295 119 MASHINGTLVPLLKE 133 (139)
Q Consensus 119 ~~l~~~g~L~~~L~~ 133 (139)
....++-.|.+.|++
T Consensus 98 ~~~l~~t~l~~~l~~ 112 (217)
T cd03145 98 TSALGGTPLLDALRK 112 (217)
T ss_pred HHHHcCChHHHHHHH
Confidence 665555556666554
No 358
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=35.12 E-value=1.4e+02 Score=20.12 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=35.2
Q ss_pred HHHHHHhcCCc--EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCC---------CCCCccE
Q 039295 36 EKVARVASESA--VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANS---------SAVPVPI 104 (139)
Q Consensus 36 ~~~~~~i~~~~--Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~---------~~~~vP~ 104 (139)
..+.+..+... ++......-++ +++++++.+++|.. -.|.+. ++.+.+|.. . +|.
T Consensus 52 ~~l~~~~~~~~v~~v~v~~~~~~~---~~~~~~~~~~~~~~-~~D~~~-------~~~~~~~~~~~~~~~~~~~---~P~ 117 (146)
T PF08534_consen 52 NELQEKYKDKGVDVVGVSSDDDPP---VREFLKKYGINFPV-LSDPDG-------ALAKALGVTIMEDPGNGFG---IPT 117 (146)
T ss_dssp HHHHHHHHTTTCEEEEEEESSSHH---HHHHHHHTTTTSEE-EEETTS-------HHHHHTTCEEECCTTTTSS---SSE
T ss_pred HhhhhhhccCceEEEEecccCCHH---HHHHHHhhCCCceE-EechHH-------HHHHHhCCccccccccCCe---ecE
Confidence 34444434443 33344444555 99999999988876 334322 577777866 6 898
Q ss_pred EEE
Q 039295 105 VFI 107 (139)
Q Consensus 105 Ifi 107 (139)
+|+
T Consensus 118 ~~l 120 (146)
T PF08534_consen 118 TFL 120 (146)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 359
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=35.08 E-value=2.2e+02 Score=24.37 Aligned_cols=43 Identities=14% Similarity=0.117 Sum_probs=29.0
Q ss_pred cCCcEEEEEcCCChhHH-------HHHHHHhhCCCCCeEEEecCCCChHH
Q 039295 43 SESAVVIFSVSSCCMCH-------AVKRLFCGMGVNPTVYELDHDPRGAD 85 (139)
Q Consensus 43 ~~~~Vvif~~~~Cp~C~-------~ak~~L~~~~v~~~~~~vd~~~~~~~ 85 (139)
++.++.++..|....-+ .++++|+..+++|..+......++.+
T Consensus 110 ~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~ 159 (481)
T PLN02958 110 RPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQETKYQLHAKE 159 (481)
T ss_pred CCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEEeccCccHHHH
Confidence 55678888888666432 46668888999887776555544443
No 360
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=35.06 E-value=68 Score=21.35 Aligned_cols=30 Identities=20% Similarity=0.102 Sum_probs=21.7
Q ss_pred CChHHHHHHHHHHhCCCCCCCccEEEECCEEEe
Q 039295 81 PRGADIERVLMRLLANSSAVPVPIVFIGGKLIG 113 (139)
Q Consensus 81 ~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iG 113 (139)
|.-+...+.+++..+... +|+..|+.+..|
T Consensus 55 PQv~~~~~~i~~~~~~~~---ipv~~I~~~~Yg 84 (99)
T cd05565 55 PQMASYYDELKKDTDRLG---IKLVTTTGKQYI 84 (99)
T ss_pred ChHHHHHHHHHHHhhhcC---CCEEEeCHHHHh
Confidence 334445567787777666 999999987766
No 361
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=35.01 E-value=1.4e+02 Score=20.13 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=40.7
Q ss_pred HHHHHHHHhcC---CcEEEEEcCCCh----hHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCC
Q 039295 34 PMEKVARVASE---SAVVIFSVSSCC----MCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSS 98 (139)
Q Consensus 34 ~~~~~~~~i~~---~~Vvif~~~~Cp----~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~ 98 (139)
..+.+..+-.. ..+.++....-| |=+..++..++.|+.+..+.+..+....++.+.+.++..-..
T Consensus 16 l~~~i~~l~~~~~~P~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D~~ 87 (117)
T PF00763_consen 16 LKEEIEKLKEKGITPKLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNEDPS 87 (117)
T ss_dssp HHHHHHHHHHCT---EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHhcCCCcEEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCCCC
Confidence 34444444433 344444433334 445667888899999999999988888888888888876655
No 362
>PLN02263 serine decarboxylase
Probab=34.95 E-value=1.5e+02 Score=25.44 Aligned_cols=75 Identities=16% Similarity=0.197 Sum_probs=45.4
Q ss_pred EEEEcCCChhHHHHHHHHhhCCCCCeEEEecCC--CChHHHHHHHHHHhCCCCCCCccEEEE---CCEEEeccHHHHHHH
Q 039295 48 VIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHD--PRGADIERVLMRLLANSSAVPVPIVFI---GGKLIGAMDRVMASH 122 (139)
Q Consensus 48 vif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~--~~~~~~~~~L~~~~g~~~~~~vP~Ifi---~g~~iGG~~~l~~l~ 122 (139)
++|.....-||.. +...=+|++...+.+|.+ -+...+++++.+ ... .|.+++ +....|.+|++.+
T Consensus 180 vvy~S~~aH~Sv~--KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~---d~~---~P~iVvataGTT~~GAiDpi~e-- 249 (470)
T PLN02263 180 ILYASRESHYSVF--KAARMYRMECVKVDTLVSGEIDCADFKAKLLA---NKD---KPAIINVNIGTTVKGAVDDLDL-- 249 (470)
T ss_pred EEEEcCCccHHHH--HHHHhcCCcceEeccCCCCcCcHHHHHHHHHh---CCC---CcEEEEEEecCCCCcCCCCHHH--
Confidence 5677777777643 344446776666666543 233444444433 122 577765 7778899999865
Q ss_pred HcCChHHHHHhcCc
Q 039295 123 INGTLVPLLKEAGA 136 (139)
Q Consensus 123 ~~g~L~~~L~~~g~ 136 (139)
+.+++++.|+
T Consensus 250 ----Ia~i~~~~g~ 259 (470)
T PLN02263 250 ----VIKTLEECGF 259 (470)
T ss_pred ----HHHHHHHcCC
Confidence 5566777775
No 363
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=34.62 E-value=1.2e+02 Score=20.27 Aligned_cols=56 Identities=14% Similarity=0.086 Sum_probs=34.1
Q ss_pred hhHHHHHHHHhhCCCCCeEEEecC-----------------CCChHHHHHHHHHHhCCCCCCCccEEEECCEEEec
Q 039295 56 CMCHAVKRLFCGMGVNPTVYELDH-----------------DPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGA 114 (139)
Q Consensus 56 p~C~~ak~~L~~~~v~~~~~~vd~-----------------~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG 114 (139)
-.+.+.++++++.|++++..-.+. .|.-+...+.+++.+.... +|...|+....|-
T Consensus 16 lla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~PQi~~~~~~i~~~~~~~~---ipv~~I~~~~Y~~ 88 (104)
T PRK09590 16 MMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVSPQTKMYFKQFEEAGAKVG---KPVVQIPPQAYIP 88 (104)
T ss_pred HHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEChHHHHHHHHHHHHhhhcC---CCEEEeCHHHcCC
Confidence 344566777777776654322111 1223334566777776666 9999999988873
No 364
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=34.52 E-value=2.5e+02 Score=22.79 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=31.9
Q ss_pred CcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHH
Q 039295 45 SAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVL 90 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L 90 (139)
.++.|.+.+......++...|++.++++..+++..++....+.+.+
T Consensus 23 ~r~livtd~~~~~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~ 68 (374)
T cd08183 23 RRVLLVTGASSLRAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAV 68 (374)
T ss_pred CcEEEEECCchHHHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHH
Confidence 5676666555556677888899999998887776666555444444
No 365
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=33.69 E-value=1.5e+02 Score=25.70 Aligned_cols=53 Identities=9% Similarity=0.081 Sum_probs=36.5
Q ss_pred CCccHHHHHHHHhcCCcEEEEEcCCCh-----hHHHHHHHHhhC-----CCCCeEEEecCCCC
Q 039295 30 PREEPMEKVARVASESAVVIFSVSSCC-----MCHAVKRLFCGM-----GVNPTVYELDHDPR 82 (139)
Q Consensus 30 ~~~~~~~~~~~~i~~~~Vvif~~~~Cp-----~C~~ak~~L~~~-----~v~~~~~~vd~~~~ 82 (139)
.++..+..++.+-++-.|.+|....-| +=..++.+|+++ ++.++++|-..+++
T Consensus 35 LS~~T~~~L~~L~~pV~I~~~~s~~~~~~~~~~~~~v~~lL~eY~~~s~~i~~~~iDP~~~~~ 97 (552)
T TIGR03521 35 LSPASKEVVKKLDDPVSIDIFLDGELPADFRRLQKETRQLLEEFAAYNPNIKFRFVNPLEEED 97 (552)
T ss_pred cCHHHHHHHHhCCCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCcch
Confidence 356678888888777788888876654 346788888875 45666666555544
No 366
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=33.67 E-value=97 Score=19.21 Aligned_cols=39 Identities=8% Similarity=0.154 Sum_probs=27.1
Q ss_pred ccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCC
Q 039295 32 EEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVN 71 (139)
Q Consensus 32 ~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~ 71 (139)
.+..+.+..+-...+|++|.. .+..+..+-..|+..|.+
T Consensus 44 ~~~~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~l~~~G~~ 82 (96)
T cd01444 44 DSLDDWLGDLDRDRPVVVYCY-HGNSSAQLAQALREAGFT 82 (96)
T ss_pred HHHHHHHhhcCCCCCEEEEeC-CCChHHHHHHHHHHcCCc
Confidence 344455555546667888877 667777888888888865
No 367
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=33.33 E-value=1e+02 Score=20.70 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=33.3
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGAD 85 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~ 85 (139)
+|++++.++|.=..-++.+.+.++.++..+.+..+.+..+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~d 40 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEED 40 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecccccccc
Confidence 4889999999999999999999988888888888766544
No 368
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.12 E-value=20 Score=28.63 Aligned_cols=10 Identities=20% Similarity=0.620 Sum_probs=7.9
Q ss_pred cCCChhHHHH
Q 039295 52 VSSCCMCHAV 61 (139)
Q Consensus 52 ~~~Cp~C~~a 61 (139)
+..||||++-
T Consensus 270 kqtCPYCKek 279 (328)
T KOG1734|consen 270 KQTCPYCKEK 279 (328)
T ss_pred CCCCchHHHH
Confidence 5789999854
No 369
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=33.11 E-value=18 Score=14.13 Aligned_cols=7 Identities=43% Similarity=0.857 Sum_probs=4.7
Q ss_pred Cccccce
Q 039295 1 MQFQQLR 7 (139)
Q Consensus 1 ~~~~~~~ 7 (139)
|-||+.|
T Consensus 4 mgf~g~r 10 (10)
T PF08262_consen 4 MGFHGMR 10 (10)
T ss_pred ccccccC
Confidence 5677765
No 370
>PF11399 DUF3192: Protein of unknown function (DUF3192); InterPro: IPR021534 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=32.31 E-value=36 Score=23.08 Aligned_cols=16 Identities=50% Similarity=0.773 Sum_probs=13.3
Q ss_pred CccEEEECCEEEeccH
Q 039295 101 PVPIVFIGGKLIGAMD 116 (139)
Q Consensus 101 ~vP~Ifi~g~~iGG~~ 116 (139)
..|.||.||+.||=-+
T Consensus 81 CTplvF~n~~LvgWG~ 96 (102)
T PF11399_consen 81 CTPLVFKNGKLVGWGD 96 (102)
T ss_pred eEEEEEECCEEEEEcH
Confidence 4899999999997444
No 371
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=32.25 E-value=93 Score=20.89 Aligned_cols=16 Identities=25% Similarity=0.148 Sum_probs=14.1
Q ss_pred ccEEEECCEEEeccHH
Q 039295 102 VPIVFIGGKLIGAMDR 117 (139)
Q Consensus 102 vP~Ifi~g~~iGG~~~ 117 (139)
-|.|..|++.+-|+++
T Consensus 92 RPIi~~~~~~~vG~~~ 107 (114)
T TIGR00014 92 RPIVVAGDGARIGRPP 107 (114)
T ss_pred CCeEEECCEEEEcCCH
Confidence 6999999999999885
No 372
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=31.90 E-value=29 Score=27.21 Aligned_cols=30 Identities=17% Similarity=0.257 Sum_probs=17.8
Q ss_pred HhcCCcEE--EEEcCCChhHHHH----HHHHhhCCC
Q 039295 41 VASESAVV--IFSVSSCCMCHAV----KRLFCGMGV 70 (139)
Q Consensus 41 ~i~~~~Vv--if~~~~Cp~C~~a----k~~L~~~~v 70 (139)
+...+++. ..+..+||+|... -..|.+.|-
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 44445543 4556799999744 344566653
No 373
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=30.96 E-value=42 Score=24.42 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=13.3
Q ss_pred EEEcCCChhHHHHHHHHhh
Q 039295 49 IFSVSSCCMCHAVKRLFCG 67 (139)
Q Consensus 49 if~~~~Cp~C~~ak~~L~~ 67 (139)
+|+.|.|++|-...+.+.+
T Consensus 2 ~F~dPlc~~C~~~E~~l~k 20 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRK 20 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHH
T ss_pred eeeCCCChHHHHhHHHHHH
Confidence 6899999999877666654
No 374
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=30.91 E-value=1.5e+02 Score=19.33 Aligned_cols=61 Identities=13% Similarity=0.121 Sum_probs=36.6
Q ss_pred CccHHHHHHHHhcCC-cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHH
Q 039295 31 REEPMEKVARVASES-AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRL 93 (139)
Q Consensus 31 ~~~~~~~~~~~i~~~-~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~ 93 (139)
.+.+.+.++.+-+.+ ++.+.|......-....+.|+.+|++...-+|- ..+....+.|++.
T Consensus 16 ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~--ts~~~~~~~l~~~ 77 (101)
T PF13344_consen 16 IPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEII--TSGMAAAEYLKEH 77 (101)
T ss_dssp -TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEE--EHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEE--ChHHHHHHHHHhc
Confidence 455889999988876 566666666566577777789999985332221 2233444566665
No 375
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=30.80 E-value=42 Score=25.82 Aligned_cols=17 Identities=12% Similarity=0.419 Sum_probs=14.5
Q ss_pred CcEEEEEcCCChhHHHH
Q 039295 45 SAVVIFSVSSCCMCHAV 61 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~a 61 (139)
-.|++|+-+-||+|.+.
T Consensus 41 v~ItlyyEaLCPdc~~F 57 (220)
T KOG3160|consen 41 VNITLYYEALCPDCSKF 57 (220)
T ss_pred eEEEEEEEecCccHHHH
Confidence 36999999999999754
No 376
>cd04335 PrdX_deacylase This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the YbaK and ProX proteins, and the prolyl-tRNA synthetase-editing domain (ProRS-INS), specifically hydrolyzes Ala-tRNA(Pro). In this CD, many of the eukaryotic editing domains are N-terminal and cis-acting, expressed from a multidomain ProRS, however, similar to the bacterial PrdX, the mammalian, amphibian, and echinoderm PrdX-like proteins are trans-acting, single-domain proteins.
Probab=30.45 E-value=1.4e+02 Score=20.89 Aligned_cols=45 Identities=11% Similarity=0.085 Sum_probs=28.6
Q ss_pred HHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 59 HAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 59 ~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
.++..+|++++++|+.++.+......+ +.+..|......+-++++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~t~e~----~a~~~~~~~~~~~Ktlv~ 46 (156)
T cd04335 2 DELLALLDELGIAYETVEHPPVFTVEE----ADEVLGELPGAHTKNLFL 46 (156)
T ss_pred hHHHHHHHHCCCceEEEecCCcCCHHH----HHHhhccCCCceEEEEEE
Confidence 367889999999999988776544433 444444433223666665
No 377
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=30.14 E-value=2.3e+02 Score=21.03 Aligned_cols=88 Identities=17% Similarity=0.217 Sum_probs=53.9
Q ss_pred ccHHHHHHHHhcCCcEEEEEcC----CChhHHHHHHHHhhC-CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 32 EEPMEKVARVASESAVVIFSVS----SCCMCHAVKRLFCGM-GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 32 ~~~~~~~~~~i~~~~Vvif~~~----~Cp~C~~ak~~L~~~-~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
....+.+....+..+=++|.-+ +=.|...+.+.|+++ |.+...+++...++ +.+.+. . .=.||
T Consensus 18 ~~l~~~l~~~~~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~---~~~~l~------~---ad~I~ 85 (212)
T cd03146 18 PAIDDLLLSLTKARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTED---PLDALL------E---ADVIY 85 (212)
T ss_pred HHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCccc---HHHHHh------c---CCEEE
Confidence 3455556666544443444432 235678889999999 88766665433222 111221 2 45789
Q ss_pred ECCEEEeccHHHHHHHHcCChHHHHHhc
Q 039295 107 IGGKLIGAMDRVMASHINGTLVPLLKEA 134 (139)
Q Consensus 107 i~g~~iGG~~~l~~l~~~g~L~~~L~~~ 134 (139)
+.| |....+....++-.|.+.|++.
T Consensus 86 l~G---G~~~~~~~~l~~~~l~~~l~~~ 110 (212)
T cd03146 86 VGG---GNTFNLLAQWREHGLDAILKAA 110 (212)
T ss_pred ECC---chHHHHHHHHHHcCHHHHHHHH
Confidence 998 7777777777776788888763
No 378
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=29.93 E-value=62 Score=22.39 Aligned_cols=16 Identities=19% Similarity=0.260 Sum_probs=14.4
Q ss_pred ccEEEECCEEEeccHH
Q 039295 102 VPIVFIGGKLIGAMDR 117 (139)
Q Consensus 102 vP~Ifi~g~~iGG~~~ 117 (139)
-|.|+.+++.+-||++
T Consensus 92 RPIi~~~~~~~vG~~~ 107 (131)
T PRK01655 92 RPIIIDEKRLQVGYNE 107 (131)
T ss_pred CCEEEECCEEEecCCH
Confidence 6999999999999985
No 379
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=29.77 E-value=1e+02 Score=24.09 Aligned_cols=92 Identities=8% Similarity=0.006 Sum_probs=49.8
Q ss_pred hcCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEE------EecCCCC-hHHHHHHHHHHhCCCCCCCcc---EEEECCEE
Q 039295 42 ASESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVY------ELDHDPR-GADIERVLMRLLANSSAVPVP---IVFIGGKL 111 (139)
Q Consensus 42 i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~------~vd~~~~-~~~~~~~L~~~~g~~~~~~vP---~Ifi~g~~ 111 (139)
+..+++.+|+.-.=..-..+...|++.||+|+.. .|-.+++ ..+.+..|+. .|.+. .++. .+|-.+.+
T Consensus 16 l~gC~~~LysgL~~~dA~~I~a~L~~~gI~y~~~~~~~G~tI~Vp~~~~~~Ar~~La~-~GLP~-~g~~~~~~lFd~~~l 93 (249)
T PRK15348 16 LTACDVDLYRSLPEDEANQMLALLMQHHIDAEKKQEEDGVTLRVEQSQFINAVELLRL-NGYPH-RQFTTADKMFPANQL 93 (249)
T ss_pred HhcCChHHHcCCCHHHHHHHHHHHHHcCCCceEeeCCCCeEEEecHHHHHHHHHHHHH-cCCCC-CCCccHHHhCCcccc
Confidence 3445677887766677788999999999999652 1111111 1122223333 24443 0111 14443444
Q ss_pred EeccHHHH---HHHHcCChHHHHHhcC
Q 039295 112 IGAMDRVM---ASHINGTLVPLLKEAG 135 (139)
Q Consensus 112 iGG~~~l~---~l~~~g~L~~~L~~~g 135 (139)
.-+..+.. .+..+|+|.+.|+...
T Consensus 94 ~~t~te~~qki~y~regELarTI~~id 120 (249)
T PRK15348 94 VVSPQEEQQKINFLKEQRIEGMLSQME 120 (249)
T ss_pred ccChhHHHHHHHHHHHHHHHHHHHhCC
Confidence 33333332 3456899999997643
No 380
>TIGR03757 conj_TIGR03757 integrating conjugative element protein, PFL_4709 family. Members of this protein belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=29.56 E-value=1.1e+02 Score=21.05 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=17.6
Q ss_pred hCCCCCCCccEEEECCEEE-eccHHHHH
Q 039295 94 LANSSAVPVPIVFIGGKLI-GAMDRVMA 120 (139)
Q Consensus 94 ~g~~~~~~vP~Ifi~g~~i-GG~~~l~~ 120 (139)
+|... +|.|++|++++ -|--|+..
T Consensus 80 lGi~k---~PAVV~D~~~VVYG~~DV~~ 104 (113)
T TIGR03757 80 LGVTK---IPAVVVDRRYVVYGETDVAR 104 (113)
T ss_pred cCCcc---CCEEEEcCCeEEecCccHHH
Confidence 48888 99999999865 55555544
No 381
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=29.04 E-value=98 Score=23.86 Aligned_cols=66 Identities=14% Similarity=0.193 Sum_probs=38.8
Q ss_pred HHHHHHHhcCC---cEEE-EEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEEC
Q 039295 35 MEKVARVASES---AVVI-FSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIG 108 (139)
Q Consensus 35 ~~~~~~~i~~~---~Vvi-f~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~ 108 (139)
.+.++++.... =|+| .++.+-|.|.-+...|.+++..|-.+..-..+... ....+.... +|++||=
T Consensus 99 ~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~-----cIpNYPe~n---lPTl~VY 168 (240)
T KOG3170|consen 99 PDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATT-----CIPNYPESN---LPTLLVY 168 (240)
T ss_pred hHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccc-----ccCCCcccC---CCeEEEe
Confidence 44455544333 2444 67899999999999999998877433322222111 111223334 8999874
No 382
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A.
Probab=28.92 E-value=48 Score=22.25 Aligned_cols=15 Identities=20% Similarity=0.384 Sum_probs=12.5
Q ss_pred ccEEEECCEEEeccH
Q 039295 102 VPIVFIGGKLIGAMD 116 (139)
Q Consensus 102 vP~Ifi~g~~iGG~~ 116 (139)
.=++||||.++|.+-
T Consensus 64 ~~~vwVNG~~~G~~~ 78 (111)
T PF13364_consen 64 RASVWVNGWFLGSYW 78 (111)
T ss_dssp EEEEEETTEEEEEEE
T ss_pred EEEEEECCEEeeeec
Confidence 458999999999865
No 383
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=28.65 E-value=1.7e+02 Score=22.40 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.0
Q ss_pred HHHHHhCCCCCCCccEEEEC
Q 039295 89 VLMRLLANSSAVPVPIVFIG 108 (139)
Q Consensus 89 ~L~~~~g~~~~~~vP~Ifi~ 108 (139)
.+.+.++... ||.+.+.
T Consensus 153 ~lF~~F~I~~---VPafVv~ 169 (212)
T PRK13730 153 TLFSQYGIRS---VPALVVF 169 (212)
T ss_pred HHHHhcCCcc---ccEEEEE
Confidence 5777789888 9999885
No 384
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=28.65 E-value=1.3e+02 Score=18.93 Aligned_cols=13 Identities=23% Similarity=0.340 Sum_probs=7.3
Q ss_pred CccEEEECCEEEe
Q 039295 101 PVPIVFIGGKLIG 113 (139)
Q Consensus 101 ~vP~Ifi~g~~iG 113 (139)
-+|..+..|..+.
T Consensus 64 vvPl~~~~g~h~~ 76 (101)
T cd03409 64 IVPLAPVSGDEVF 76 (101)
T ss_pred EEeCccccChhhH
Confidence 3566666665553
No 385
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=28.45 E-value=2.8e+02 Score=21.40 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=38.1
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCE
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGK 110 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~ 110 (139)
.+++|+.++|+-..-++.+..+++.++.............+...+.. ... -..+|||.-
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~l~~---~~~---~~vl~iDEi 90 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAILTN---LEE---GDVLFIDEI 90 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHHHHh---ccc---CCEEEEehH
Confidence 48999999999999999999988887655543322222233333322 222 457788873
No 386
>PLN02204 diacylglycerol kinase
Probab=28.39 E-value=3.6e+02 Score=24.03 Aligned_cols=73 Identities=14% Similarity=0.215 Sum_probs=42.5
Q ss_pred cCCcEEEEEcCCChhH------HHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccH
Q 039295 43 SESAVVIFSVSSCCMC------HAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMD 116 (139)
Q Consensus 43 ~~~~Vvif~~~~Cp~C------~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~ 116 (139)
++.++.||..|.|.-- ..+.++|...++++.++.......+.++...+.+. .... .=-.|.++|. |-+.
T Consensus 158 r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~~aghA~d~~~~~~~~-~l~~--~D~VVaVGGD--Gt~n 232 (601)
T PLN02204 158 RPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTERAGHAFDVMASISNK-ELKS--YDGVIAVGGD--GFFN 232 (601)
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhh-hccC--CCEEEEEcCc--cHHH
Confidence 3456888988876642 36788899999988777666554444432222221 0111 0135566776 5566
Q ss_pred HHHH
Q 039295 117 RVMA 120 (139)
Q Consensus 117 ~l~~ 120 (139)
+++.
T Consensus 233 EVlN 236 (601)
T PLN02204 233 EILN 236 (601)
T ss_pred HHHH
Confidence 6554
No 387
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=28.34 E-value=1.8e+02 Score=24.59 Aligned_cols=33 Identities=18% Similarity=0.266 Sum_probs=28.5
Q ss_pred EEEEEcCCChhHHHHHHHHhhCCCCCeEEEecC
Q 039295 47 VVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDH 79 (139)
Q Consensus 47 Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~ 79 (139)
+-+|+-++|.-..-++.+..++|+++..++..+
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~vsa~e 183 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGE 183 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHH
Confidence 566899999999999999999999987776554
No 388
>cd04333 ProX_deacylase This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro) deacylase and also the cis-acting prolyl-tRNA synthetase-editing domain (ProRS-INS). While ProX and ProRS-INS hydrolyze misacylated Ala-tRNA(Pro), the E. coli YbaK hydrolyzes misacylated Cys-tRNA(Pro). A few CD members are N-terminal, YbaK-ProX-like domains of an uncharacterized protein with a C-terminal, predicted Fe-S protein domain.
Probab=28.13 E-value=1.5e+02 Score=20.55 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=28.4
Q ss_pred HHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 59 HAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 59 ~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
.++..+|++.+++|+.++.+.....- +++.+..|......+-++++
T Consensus 2 ~~~~~~L~~~~i~~~~~~~~~~~~t~---~e~a~~~~~~~~~~~K~l~~ 47 (148)
T cd04333 2 ERVRAFLAARGLDLEVIELPESTRTA---ALAAEALGCEPGQIAKSLVF 47 (148)
T ss_pred HHHHHHHHHCCCCCeEEECCCCcchH---HHHHHHcCCChhHEEEEEEE
Confidence 46789999999999999888532221 24666666532112445543
No 389
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=27.28 E-value=2.3e+02 Score=20.17 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=32.0
Q ss_pred CCccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCC
Q 039295 30 PREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMG 69 (139)
Q Consensus 30 ~~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~ 69 (139)
..+.+.++++++.+..++.||+...=.|+..+-+.|+-.+
T Consensus 59 ~rPgv~efL~~l~~~yel~I~T~~~~~yA~~vl~~ldp~~ 98 (156)
T TIGR02250 59 LRPFLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLIDPDG 98 (156)
T ss_pred ECCCHHHHHHHHHhhcEEEEEeCCcHHHHHHHHHHhCcCC
Confidence 4567889998888777899999988888888777776554
No 390
>COG1628 Endonuclease V homolog [Replication, recombination, and repair]
Probab=27.24 E-value=1.6e+02 Score=22.11 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=33.4
Q ss_pred CCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccH--HHHHHHH
Q 039295 69 GVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMD--RVMASHI 123 (139)
Q Consensus 69 ~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~--~l~~l~~ 123 (139)
++.|..+++|-..-...+.+. ...++... +-.|+.+|--+|||+ |+.++++
T Consensus 41 gv~~~~i~vDG~D~T~~i~~~-v~~~~~~~---~rvVlLdGIt~aGFNivDi~~l~~ 93 (185)
T COG1628 41 GVAFSLITVDGLDVTDAISDM-VNRSKRRD---LRVVLLDGITFAGFNIVDIEALYK 93 (185)
T ss_pred eeEEEEEEecCchHHHHHHHH-HHHhhccc---ccEEEECCeeeccceEecHHHHHH
Confidence 345677888877666554433 33345554 778899999999998 5555553
No 391
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=26.74 E-value=3.5e+02 Score=21.96 Aligned_cols=62 Identities=18% Similarity=0.306 Sum_probs=37.7
Q ss_pred CcEEEEEcCC---ChhHHHHHHHHhhCCCCCeEE-EecCCCChHHHHHHHHHHhCCCCCCCccEEEECC
Q 039295 45 SAVVIFSVSS---CCMCHAVKRLFCGMGVNPTVY-ELDHDPRGADIERVLMRLLANSSAVPVPIVFIGG 109 (139)
Q Consensus 45 ~~Vvif~~~~---Cp~C~~ak~~L~~~~v~~~~~-~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g 109 (139)
.++.|.+.+. -+...+++..|++.++.+..+ ++..++....+.+.+........ =-.|=|||
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~---D~IIaiGG 92 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGA---DGVIGFGG 92 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCC---CEEEEeCC
Confidence 4566665543 457789999999999987655 36666666655555444333222 23455665
No 392
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=26.59 E-value=1.1e+02 Score=21.13 Aligned_cols=43 Identities=19% Similarity=0.048 Sum_probs=33.3
Q ss_pred CCccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCCC
Q 039295 30 PREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNP 72 (139)
Q Consensus 30 ~~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~ 72 (139)
..+...++++.+.+...|+|||...=.|+..+...|+..+..+
T Consensus 37 ~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v~~~ldp~~~~~ 79 (159)
T PF03031_consen 37 LRPGLDEFLEELSKHYEVVIWTSASEEYAEPVLDALDPNGKLF 79 (159)
T ss_dssp E-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHHHHHHTTTTSSE
T ss_pred eCchHHHHHHHHHHhceEEEEEeehhhhhhHHHHhhhhhcccc
Confidence 5678999999998888999999999889999999988654433
No 393
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=25.99 E-value=2.8e+02 Score=20.57 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=60.1
Q ss_pred HHHHHHHhcCCcEEEEEcC-----CChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCC-CccEEEEC
Q 039295 35 MEKVARVASESAVVIFSVS-----SCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAV-PVPIVFIG 108 (139)
Q Consensus 35 ~~~~~~~i~~~~Vvif~~~-----~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~-~vP~Ifi~ 108 (139)
-+.++.+-..+.|.+|+.+ .-+.-..|+.+=++.||+..-..+-..-...+ .+.-.+|-.... +--.+|||
T Consensus 70 ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpVlRHs~kKP~ct~E---~~~y~~~Nshv~~~se~~~vG 146 (190)
T KOG2961|consen 70 IERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPVLRHSVKKPACTAE---EVEYHFGNSHVCTSSELIMVG 146 (190)
T ss_pred HHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCceEeecccCCCccHH---HHHHHhCCcccCChhHeEEEc
Confidence 3455666777889999875 46777889988899999987777766665555 344445533211 13467898
Q ss_pred CEEEeccHHHHHHHHcCChHHH
Q 039295 109 GKLIGAMDRVMASHINGTLVPL 130 (139)
Q Consensus 109 g~~iGG~~~l~~l~~~g~L~~~ 130 (139)
++.+ .|+.-.+..|.+--+
T Consensus 147 DRlf---TDI~~aN~mGs~gVw 165 (190)
T KOG2961|consen 147 DRLF---TDIVYANRMGSLGVW 165 (190)
T ss_pred cchh---hhHhhhhhccceeEE
Confidence 8765 677777777766433
No 394
>cd00002 YbaK_deacylase This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins. These trans-acting, single-domain proteins are homologs of ProX and also the cis-acting prolyl-tRNA synthetase (ProRS) inserted (INS) editing domain. The bacterial amino acid trans-editing enzyme YbaK is a deacylase that hydrolyzes cysteinyl-tRNA(Pro)'s mischarged by prolyl-tRNA synthetase. YbaK also hydrolyzes glycyl-tRNA's, alanyl-tRNA's, seryl-tRNA's, and prolyl-tRNA's. YbaK is homologous to the INS domain of prolyl-tRNA synthetase (ProRS) as well as the trans-editing enzyme ProX of Aeropyrum pernix which hydrolyzes alanyl-tRNA's and glycyl-tRNA's.
Probab=25.95 E-value=1.3e+02 Score=20.94 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=28.4
Q ss_pred HHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEE
Q 039295 60 AVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFI 107 (139)
Q Consensus 60 ~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi 107 (139)
.+.++|++++++|..++.+..+....+ +++.+..|......+-.+++
T Consensus 3 ~~~~~L~~~~i~~~~~~h~~~~~~~t~-~e~~~~~~~~~~~~~K~li~ 49 (152)
T cd00002 3 PAIRLLDKAKIPYELHEYEHDEDASDG-LEAAEKLGLDPEQVFKTLVV 49 (152)
T ss_pred HHHHHHHHcCCCeEEEeecCCCCcCCH-HHHHHHhCCCHHHeEEEEEE
Confidence 478899999999999998875531111 13445556542112455553
No 395
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=25.85 E-value=21 Score=27.02 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=41.5
Q ss_pred cEEEEEc-----CCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEE--eccHHH
Q 039295 46 AVVIFSV-----SSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLI--GAMDRV 118 (139)
Q Consensus 46 ~Vvif~~-----~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~i--GG~~~l 118 (139)
.-.||.+ =.|++|.....+=.+.+.++....+ .++.+.+... +... .=.++-||++. .+..++
T Consensus 22 r~~vFVR~~GC~l~C~~Cdt~~t~~~~~~~~~~~~~~------~~I~~~i~~~-~~~~---~~V~lTGGEP~~~~~l~~L 91 (212)
T COG0602 22 RPSVFVRFAGCNLRCPGCDTKYTWDFNYGKPGTPMSA------DEILADIKSL-GYKA---RGVSLTGGEPLLQPNLLEL 91 (212)
T ss_pred ceeEEEEcCCCCCCCCCCCChhhhcccccCCCCccCH------HHHHHHHHhc-CCCc---ceEEEeCCcCCCcccHHHH
Confidence 4566666 2699998665543333333332222 2333344432 2222 22557788873 355666
Q ss_pred HHHHHcCChHHHHHhcCccC
Q 039295 119 MASHINGTLVPLLKEAGALW 138 (139)
Q Consensus 119 ~~l~~~g~L~~~L~~~g~~~ 138 (139)
.++.+...++-.|+..|.||
T Consensus 92 l~~l~~~g~~~~lETngti~ 111 (212)
T COG0602 92 LELLKRLGFRIALETNGTIP 111 (212)
T ss_pred HHHHHhCCceEEecCCCCcc
Confidence 65555444444455455544
No 396
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=25.72 E-value=85 Score=21.21 Aligned_cols=35 Identities=14% Similarity=0.326 Sum_probs=25.4
Q ss_pred cCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecC
Q 039295 43 SESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDH 79 (139)
Q Consensus 43 ~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~ 79 (139)
+..+|++|-......+..+-.+|+.+|.. ...++-
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~~~L~~~G~~--v~~L~G 119 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLAWLLESLGID--VPLLEG 119 (128)
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHcCCc--eeEeCC
Confidence 45579999876666777777889999974 445543
No 397
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=25.03 E-value=16 Score=25.63 Aligned_cols=48 Identities=13% Similarity=0.289 Sum_probs=25.4
Q ss_pred HHHHHHhCCCCCCCccEEEECCEEEeccHHHHHH-----HHcCChHHHHHhcCccCC
Q 039295 88 RVLMRLLANSSAVPVPIVFIGGKLIGAMDRVMAS-----HINGTLVPLLKEAGALWL 139 (139)
Q Consensus 88 ~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~~l~~l-----~~~g~L~~~L~~~g~~~~ 139 (139)
.+|.+++|... -.+|.+++ +.||.++-+.+ ..-+.|+++++..+.||+
T Consensus 71 ~~Laery~i~k-e~fPv~~L---F~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~yi 123 (126)
T PF07912_consen 71 MELAERYKIDK-EDFPVIYL---FVGDKEEPVRYPFDGDVTADNLQRFVKSNTGLYI 123 (126)
T ss_dssp HHHHHHTT-SC-CC-SEEEE---EESSTTSEEEE-TCS-S-HHHHHHHHHHTSS--T
T ss_pred HHHHHHhCCCc-ccCCEEEE---ecCCCCCCccCCccCCccHHHHHHHHHhCCCeee
Confidence 47999998742 23898843 22222222222 223568899999877775
No 398
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=24.55 E-value=34 Score=25.60 Aligned_cols=49 Identities=8% Similarity=0.105 Sum_probs=25.9
Q ss_pred CCCeEEEecCCCChHHHHHHHHHHhCCCCCCCccEEEECCEEEeccH--HHHHHH
Q 039295 70 VNPTVYELDHDPRGADIERVLMRLLANSSAVPVPIVFIGGKLIGAMD--RVMASH 122 (139)
Q Consensus 70 v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~iGG~~--~l~~l~ 122 (139)
+-+..+.+|-.+.... +.++........+=.|+++|--+|||+ |+..++
T Consensus 37 v~~~~itvdG~DaT~~----i~~m~~~~~r~~i~~v~LdGit~agFNiiD~~~l~ 87 (187)
T PF01949_consen 37 VAFGRITVDGMDATEA----IIEMVKRLFRPDIRVVMLDGITFAGFNIIDIERLY 87 (187)
T ss_dssp EEEEEE-TT-S-HHHH----HHHHHCCTTTTTEEEEEESSSEETTTEE--HHHHH
T ss_pred EEEEEEEECCchHHHH----HHHHHHhcccCcceEEEECCEeEEeeEEecHHHHH
Confidence 3455666666655443 444432222112567799999999998 444444
No 399
>TIGR03191 benz_CoA_bzdO benzoyl-CoA reductase, bzd-type, O subunit. Members of this family are the O subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=24.51 E-value=2.1e+02 Score=24.11 Aligned_cols=18 Identities=11% Similarity=0.183 Sum_probs=8.2
Q ss_pred HHHHhhCCCCCeEEEecC
Q 039295 62 KRLFCGMGVNPTVYELDH 79 (139)
Q Consensus 62 k~~L~~~~v~~~~~~vd~ 79 (139)
++.|++.||||-.+|.|-
T Consensus 384 k~~l~~~GIP~L~ietD~ 401 (430)
T TIGR03191 384 RLAIAKAGIPIMTFEGNM 401 (430)
T ss_pred HHHHHHcCCCEEEEECCC
Confidence 444444445544444443
No 400
>PF07511 DUF1525: Protein of unknown function (DUF1525); InterPro: IPR011090 This family of proteins is restricted to the Gammaproteobacteria. Members belong to extended genomic regions that appear to be spread by conjugative transfer.
Probab=23.88 E-value=1.1e+02 Score=21.10 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=18.4
Q ss_pred hCCCCCCCccEEEECCEEE-eccHHHHHH
Q 039295 94 LANSSAVPVPIVFIGGKLI-GAMDRVMAS 121 (139)
Q Consensus 94 ~g~~~~~~vP~Ifi~g~~i-GG~~~l~~l 121 (139)
+|... +|.|.+|++++ -|-.|+...
T Consensus 79 lgi~k---~PAVVfD~~~VVYG~tDV~~A 104 (114)
T PF07511_consen 79 LGITK---YPAVVFDDRYVVYGETDVARA 104 (114)
T ss_pred hCccc---cCEEEEcCCeEEecccHHHHH
Confidence 48888 99999998755 566666543
No 401
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins. It is named after the characteristic PEGA sequence motif found in this domain. The secondary structure of this domain is predicted to be beta-strands.
Probab=23.39 E-value=66 Score=19.30 Aligned_cols=11 Identities=45% Similarity=0.909 Sum_probs=9.7
Q ss_pred EEEECCEEEec
Q 039295 104 IVFIGGKLIGA 114 (139)
Q Consensus 104 ~Ifi~g~~iGG 114 (139)
.|||||+++|-
T Consensus 14 ~V~vdg~~~G~ 24 (71)
T PF08308_consen 14 EVYVDGKYIGT 24 (71)
T ss_pred EEEECCEEecc
Confidence 68999999983
No 402
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=23.13 E-value=66 Score=21.00 Aligned_cols=35 Identities=6% Similarity=-0.048 Sum_probs=25.3
Q ss_pred HHHHHhcCCcEEEEEcCCChhHHHHHHHHhhCCCCC
Q 039295 37 KVARVASESAVVIFSVSSCCMCHAVKRLFCGMGVNP 72 (139)
Q Consensus 37 ~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~ 72 (139)
.+++.... .+..|..|...+-..+.+++.+.|.+|
T Consensus 88 ~l~~~~g~-~~~~f~~P~g~~~~~~~~~l~~~G~~y 122 (123)
T PF01522_consen 88 ILEEITGR-PPKGFRYPFGSYDDNTLQALREAGYKY 122 (123)
T ss_dssp HHHHHHSS-EESEEE-GGGEECHHHHHHHHHTT-EE
T ss_pred HHHHHhCC-CCcEEECCCCCCCHHHHHHHHHcCCCc
Confidence 33444444 788898899888899999999999865
No 403
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=23.04 E-value=2.6e+02 Score=21.92 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCChhHHHHHHHHhhCCC-CCeEEEecCC
Q 039295 44 ESAVVIFSVSSCCMCHAVKRLFCGMGV-NPTVYELDHD 80 (139)
Q Consensus 44 ~~~Vvif~~~~Cp~C~~ak~~L~~~~v-~~~~~~vd~~ 80 (139)
.+.|.+|+..+|+-.--+|.+|.++.- ....++|+..
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 356999999999999999999987754 3677777765
No 404
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.89 E-value=54 Score=19.92 Aligned_cols=13 Identities=15% Similarity=0.493 Sum_probs=10.0
Q ss_pred CCChhHHHHHHHH
Q 039295 53 SSCCMCHAVKRLF 65 (139)
Q Consensus 53 ~~Cp~C~~ak~~L 65 (139)
|-||.|+++-.-|
T Consensus 45 PVCP~Ck~iye~l 57 (58)
T PF11238_consen 45 PVCPECKEIYESL 57 (58)
T ss_pred CCCcCHHHHHHhc
Confidence 5699999886654
No 405
>PF13353 Fer4_12: 4Fe-4S single cluster domain; PDB: 3C8F_A 3CB8_A 3T7V_A 2YX0_A 3CAN_A.
Probab=22.87 E-value=68 Score=21.58 Aligned_cols=14 Identities=36% Similarity=0.842 Sum_probs=7.3
Q ss_pred cEEEEEcC---CChhHH
Q 039295 46 AVVIFSVS---SCCMCH 59 (139)
Q Consensus 46 ~Vvif~~~---~Cp~C~ 59 (139)
.+++|+.. .|+||.
T Consensus 7 ~~~~~t~~Cnl~C~yC~ 23 (139)
T PF13353_consen 7 RVVLFTNGCNLRCKYCF 23 (139)
T ss_dssp EEEEEEC--SB--TT-T
T ss_pred EEEEEcCcccccCcCcC
Confidence 57888654 599994
No 406
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=22.86 E-value=1.7e+02 Score=21.52 Aligned_cols=7 Identities=43% Similarity=0.876 Sum_probs=3.0
Q ss_pred ccEEEEC
Q 039295 102 VPIVFIG 108 (139)
Q Consensus 102 vP~Ifi~ 108 (139)
+|.|.||
T Consensus 82 ~~avLiN 88 (187)
T PF05728_consen 82 LPAVLIN 88 (187)
T ss_pred CCEEEEc
Confidence 3444444
No 407
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.48 E-value=77 Score=20.16 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=17.3
Q ss_pred CChhHHHHHHHHhhCCCCCe
Q 039295 54 SCCMCHAVKRLFCGMGVNPT 73 (139)
Q Consensus 54 ~Cp~C~~ak~~L~~~~v~~~ 73 (139)
-=+||+++-..|+++++.|+
T Consensus 14 evGF~rk~L~I~E~~~is~E 33 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYE 33 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEe
Confidence 45789999999999999874
No 408
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=22.36 E-value=3.6e+02 Score=20.55 Aligned_cols=79 Identities=13% Similarity=0.259 Sum_probs=45.8
Q ss_pred cHHHHHHHHhcCC--cEEEEEcCCChhHHHHHHHHhhC-CCC--CeEEEecCC-CChHHHHHHHHHHhCCCCCCCccEEE
Q 039295 33 EPMEKVARVASES--AVVIFSVSSCCMCHAVKRLFCGM-GVN--PTVYELDHD-PRGADIERVLMRLLANSSAVPVPIVF 106 (139)
Q Consensus 33 ~~~~~~~~~i~~~--~Vvif~~~~Cp~C~~ak~~L~~~-~v~--~~~~~vd~~-~~~~~~~~~L~~~~g~~~~~~vP~If 106 (139)
+..+.+..++... ++.-|+ .+..||+.. ... ....|+-.. .++.++++.|.+. |. . +|.||
T Consensus 15 ~vr~al~~Ll~s~G~~v~~~~--------s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~-~~-~---~PVIf 81 (202)
T COG4566 15 SVRDALAFLLESAGFQVKCFA--------SAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAER-GI-R---LPVIF 81 (202)
T ss_pred HHHHHHHHHHHhCCceeeeec--------CHHHHHhhccCCCCCeEEEecCCCCCchHHHHHHHHhc-CC-C---CCEEE
Confidence 4455566666665 355554 356677664 222 345555554 4567777777665 33 3 89999
Q ss_pred ECCEEEeccHHHHHHHHcCC
Q 039295 107 IGGKLIGAMDRVMASHINGT 126 (139)
Q Consensus 107 i~g~~iGG~~~l~~l~~~g~ 126 (139)
+-|+ |.---....-+.|.
T Consensus 82 iTGh--gDIpmaV~AmK~GA 99 (202)
T COG4566 82 LTGH--GDIPMAVQAMKAGA 99 (202)
T ss_pred EeCC--CChHHHHHHHHcch
Confidence 9987 44444444444444
No 409
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=22.27 E-value=1.1e+02 Score=16.86 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=16.7
Q ss_pred EEECCEEEeccH--HHHHHHHcCChH
Q 039295 105 VFIGGKLIGAMD--RVMASHINGTLV 128 (139)
Q Consensus 105 Ifi~g~~iGG~~--~l~~l~~~g~L~ 128 (139)
+..||+..|-++ ++.++..+|+|.
T Consensus 4 ~~~~g~~~GP~s~~el~~l~~~g~i~ 29 (45)
T PF14237_consen 4 YARNGQQQGPFSLEELRQLISSGEID 29 (45)
T ss_pred EeCCCeEECCcCHHHHHHHHHcCCCC
Confidence 345788888766 577777777764
No 410
>cd03082 TRX_Fd_NuoE_W_FDH_beta TRX-like [2Fe-2S] Ferredoxin (Fd) family, NADH:ubiquinone oxidoreductase (Nuo) subunit E family, Tungsten-containing formate dehydrogenase (W-FDH) beta subunit; composed of proteins similar to the W-FDH beta subunit of Methylobacterium extorquens. W-FDH is a heterodimeric NAD-dependent enzyme catalyzing the conversion of formate to carbon dioxide. The beta subunit is a fusion protein containing an N-terminal NuoE domain and a C-terminal NuoF domain. NuoE and NuoF are components of Nuo, a multisubunit complex catalyzing the electron transfer of NADH to quinone coupled with the transfer of protons across the membrane. Electrons are transferred from NADH to quinone through a chain of iron-sulfur clusters in Nuo, including the [2Fe-2S] cluster in NuoE and the [4Fe-4S] cluster in NuoF. In addition, NuoF is also the NADH- and FMN-binding subunit. Similarly, the beta subunit of W-FDH is most likely involved in the electron transport chain during the NAD-dependen
Probab=22.17 E-value=1.3e+02 Score=18.61 Aligned_cols=16 Identities=13% Similarity=0.422 Sum_probs=13.5
Q ss_pred ccEEEECCEEEeccHH
Q 039295 102 VPIVFIGGKLIGAMDR 117 (139)
Q Consensus 102 vP~Ifi~g~~iGG~~~ 117 (139)
-|.+.||+++++....
T Consensus 47 gP~v~V~~~~~~~~t~ 62 (72)
T cd03082 47 APAALVGQRPVDGATP 62 (72)
T ss_pred CCeEEECCEEeCCcCH
Confidence 6999999999977653
No 411
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=22.13 E-value=5.2e+02 Score=22.35 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=46.9
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCC---CCeEEEecCC--CChHHHHHHHHHHhCCCCCCCccEEEE--CC-EEEeccHH
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGV---NPTVYELDHD--PRGADIERVLMRLLANSSAVPVPIVFI--GG-KLIGAMDR 117 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v---~~~~~~vd~~--~~~~~~~~~L~~~~g~~~~~~vP~Ifi--~g-~~iGG~~~ 117 (139)
+.+||..+..-+|. .+..+-+|+ ....+.+|.+ -+...+++.+.+.....+ .|..++ -| ...|..|+
T Consensus 209 ~~~v~~S~~~H~S~--~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~---~~~~vvataGtt~tGaiDp 283 (522)
T TIGR03799 209 GLAILVSERGHYSL--GKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNI---KPLAIVGVAGTTETGNIDP 283 (522)
T ss_pred ceEEEECCCchHHH--HHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCC---CcEEEEEEecCcCCCCcCC
Confidence 57889988888885 344555566 3555666543 334455555544333344 566555 34 46788888
Q ss_pred HHHHHHcCChHHHHHhcCc
Q 039295 118 VMASHINGTLVPLLKEAGA 136 (139)
Q Consensus 118 l~~l~~~g~L~~~L~~~g~ 136 (139)
+.++ .++.++.|+
T Consensus 284 l~eI------a~i~~~~g~ 296 (522)
T TIGR03799 284 LDEM------ADIAQELGC 296 (522)
T ss_pred HHHH------HHHHHHcCC
Confidence 7654 455555553
No 412
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=22.07 E-value=3.2e+02 Score=19.95 Aligned_cols=94 Identities=18% Similarity=0.109 Sum_probs=54.4
Q ss_pred CCCCCccHHHHHHHHhcCC---cEEEEEcCC----ChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCCCCC
Q 039295 27 GNMPREEPMEKVARVASES---AVVIFSVSS----CCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLANSSA 99 (139)
Q Consensus 27 ~~~~~~~~~~~~~~~i~~~---~Vvif~~~~----Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~~~~ 99 (139)
...+.++..+.++++-+.. .|.|+|.+. -|.-.+|+.+-+.+|+++-....-+.....++.+.+....+...
T Consensus 57 ~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~~~~~~~~~- 135 (168)
T PF09419_consen 57 EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPVLRHRAKKPGCFREILKYFKCQKVVTS- 135 (168)
T ss_pred cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHHhhccCCCC-
Confidence 3445667777777776544 489998762 35568899999999998655544444222332222222111111
Q ss_pred CCccEEEECCEEEeccHHHHHHHHcC
Q 039295 100 VPVPIVFIGGKLIGAMDRVMASHING 125 (139)
Q Consensus 100 ~~vP~Ifi~g~~iGG~~~l~~l~~~g 125 (139)
.--.++||++++ .|+...+..|
T Consensus 136 -p~eiavIGDrl~---TDVl~gN~~G 157 (168)
T PF09419_consen 136 -PSEIAVIGDRLF---TDVLMGNRMG 157 (168)
T ss_pred -chhEEEEcchHH---HHHHHhhccC
Confidence 023778888765 5555555444
No 413
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=21.96 E-value=2.7e+02 Score=22.82 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=20.4
Q ss_pred EEEEEcCCChhH----HHHHHHHhhCCCCCeEEEecC
Q 039295 47 VVIFSVSSCCMC----HAVKRLFCGMGVNPTVYELDH 79 (139)
Q Consensus 47 Vvif~~~~Cp~C----~~ak~~L~~~~v~~~~~~vd~ 79 (139)
|+.+..-.|..- ..+++.|++.|+||-.+|++.
T Consensus 325 VI~~~~~~C~~~~~e~~~lk~~l~e~GIP~L~id~~~ 361 (380)
T TIGR02263 325 VIFAAPSFCDPALLERPMLAARCKEHGIPQIAFKYAE 361 (380)
T ss_pred EEEhHhhcCChhhhhHHHHHHHHHHCCCCEEEEEecC
Confidence 555665566544 255666667777776666665
No 414
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=21.91 E-value=2.3e+02 Score=19.81 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=17.4
Q ss_pred CcEEEEEc-CCChhHHHHHHHHhh
Q 039295 45 SAVVIFSV-SSCCMCHAVKRLFCG 67 (139)
Q Consensus 45 ~~Vvif~~-~~Cp~C~~ak~~L~~ 67 (139)
..|.+|+. +-|+.|..+..-|..
T Consensus 97 G~i~l~te~~pC~SC~~vi~qF~~ 120 (133)
T PF14424_consen 97 GTIDLFTELPPCESCSNVIEQFKK 120 (133)
T ss_pred ceEEEEecCCcChhHHHHHHHHHH
Confidence 57899995 689999987555543
No 415
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=21.73 E-value=78 Score=21.28 Aligned_cols=14 Identities=43% Similarity=0.928 Sum_probs=12.1
Q ss_pred ccEEEECCEEEecc
Q 039295 102 VPIVFIGGKLIGAM 115 (139)
Q Consensus 102 vP~Ifi~g~~iGG~ 115 (139)
-|.|+|||+.+|..
T Consensus 42 ~~~v~vdg~~ig~l 55 (117)
T PF11008_consen 42 KPDVYVDGELIGEL 55 (117)
T ss_pred cceEEECCEEEEEe
Confidence 68999999999864
No 416
>PF04805 Pox_E10: E10-like protein conserved region; InterPro: IPR006890 This entry represents a family of probable FAD-linked sulphydryl oxidases found in poxviruses.; GO: 0016972 thiol oxidase activity, 0055114 oxidation-reduction process
Probab=21.68 E-value=82 Score=19.76 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=14.3
Q ss_pred cCCChhHH-HHHHHHhhCCC
Q 039295 52 VSSCCMCH-AVKRLFCGMGV 70 (139)
Q Consensus 52 ~~~Cp~C~-~ak~~L~~~~v 70 (139)
.--||.|+ .|+..+++.+|
T Consensus 15 tLPC~~Cr~HA~~ai~kNNi 34 (70)
T PF04805_consen 15 TLPCPECRIHAKEAIQKNNI 34 (70)
T ss_pred cCCCHHHHHHHHHHHHhcCc
Confidence 34699996 67888887765
No 417
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=21.37 E-value=3e+02 Score=22.09 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=26.5
Q ss_pred CcEEEEE-cCCChhHHHHHHHHhhCCCCCeEEEecCC
Q 039295 45 SAVVIFS-VSSCCMCHAVKRLFCGMGVNPTVYELDHD 80 (139)
Q Consensus 45 ~~Vvif~-~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~ 80 (139)
.+++|.+ .+....|.++.+.|++.|++...+++...
T Consensus 202 ~di~iva~G~~~~~a~eAa~~L~~~Gi~v~vi~~~~l 238 (327)
T PRK09212 202 SDVTIVTFSIQVKLALEAAELLEKEGISVEVIDLRTL 238 (327)
T ss_pred CCEEEEEccHHHHHHHHHHHHHHhcCCcEEEEEEecC
Confidence 3555543 35677888898899989999888887653
No 418
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=21.22 E-value=4.4e+02 Score=21.19 Aligned_cols=49 Identities=8% Similarity=0.247 Sum_probs=32.8
Q ss_pred CcEEEEEcC---CChhHHHHHHHHhhCCCCCeEEE-ecCCCChHHHHHHHHHH
Q 039295 45 SAVVIFSVS---SCCMCHAVKRLFCGMGVNPTVYE-LDHDPRGADIERVLMRL 93 (139)
Q Consensus 45 ~~Vvif~~~---~Cp~C~~ak~~L~~~~v~~~~~~-vd~~~~~~~~~~~L~~~ 93 (139)
.++.|.+.+ .+++..+++..|++.++.+..++ +..++....+.+.+...
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~ 76 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAY 76 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHH
Confidence 355554433 25888899999999998877654 66677766665555444
No 419
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=21.02 E-value=2.9e+02 Score=18.94 Aligned_cols=81 Identities=19% Similarity=0.176 Sum_probs=42.7
Q ss_pred cEEEEEcCCChhHHHHHHHHhhCCCCC--eEEEecCC--CChHHHHHHHHHHhCCCCCCCccEEEECCEE------Eecc
Q 039295 46 AVVIFSVSSCCMCHAVKRLFCGMGVNP--TVYELDHD--PRGADIERVLMRLLANSSAVPVPIVFIGGKL------IGAM 115 (139)
Q Consensus 46 ~Vvif~~~~Cp~C~~ak~~L~~~~v~~--~~~~vd~~--~~~~~~~~~L~~~~g~~~~~~vP~Ifi~g~~------iGG~ 115 (139)
+|++|.=.||.|-..-..=...+..+- ..+.|.=. =+...+..+|.+ | .--|+|-|-+ ..|.
T Consensus 1 kIl~F~C~~~ay~aad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~--G------ADGV~V~gC~~g~Ch~~~Gn 72 (124)
T PF02662_consen 1 KILAFCCNWCAYAAADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEK--G------ADGVLVAGCHPGDCHYREGN 72 (124)
T ss_pred CEEEEEeCCCcHHHHHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHc--C------CCEEEEeCCCCCCCCcchhh
Confidence 589999999999664333344445543 33433221 122233333322 3 4467775543 3333
Q ss_pred HHHHHHHHcCChHHHHHhcCc
Q 039295 116 DRVMASHINGTLVPLLKEAGA 136 (139)
Q Consensus 116 ~~l~~l~~~g~L~~~L~~~g~ 136 (139)
.. ...+-..++++|+..|+
T Consensus 73 ~~--a~~Rv~~~k~~L~~~Gi 91 (124)
T PF02662_consen 73 YR--AEKRVERLKKLLEELGI 91 (124)
T ss_pred HH--HHHHHHHHHHHHHHcCC
Confidence 32 33344567788887774
No 420
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=20.93 E-value=3.1e+02 Score=22.24 Aligned_cols=65 Identities=12% Similarity=0.017 Sum_probs=37.8
Q ss_pred cHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhh----CCCCCeEEEecCC---CChHHHHHHHHHHhCCC
Q 039295 33 EPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCG----MGVNPTVYELDHD---PRGADIERVLMRLLANS 97 (139)
Q Consensus 33 ~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~----~~v~~~~~~vd~~---~~~~~~~~~L~~~~g~~ 97 (139)
++.+.++++.+..+-.+++.+.=..|.-+-.++.+ .++++..+-||.- ++..++++.+.+.+|..
T Consensus 25 esi~ilrea~~~f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~FpEt~efrD~~a~~~gl~ 96 (312)
T PRK12563 25 ESIHILREVVAECSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWKFREMIDFRDRRAKELGLD 96 (312)
T ss_pred HHHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 45556666655332122344555555555555544 3667777777663 55567788888888754
No 421
>PF02288 Dehydratase_MU: Dehydratase medium subunit; InterPro: IPR003208 This family contains the medium subunit of the trimeric diol dehydratases and glycerol dehydratases. These enzymes are produced by some enterobacteria in response to growth substances.; PDB: 2D0P_B 2D0O_D 1IWP_E 1MMF_B 1NBW_B 3AUJ_B 1UC5_B 1IWB_B 1EEX_E 1DIO_B ....
Probab=20.91 E-value=2.8e+02 Score=18.93 Aligned_cols=42 Identities=12% Similarity=0.126 Sum_probs=29.4
Q ss_pred CcEEEEEcCCChhHHHHHHHH---hhCCCCCeEEEecCCCChHHH
Q 039295 45 SAVVIFSVSSCCMCHAVKRLF---CGMGVNPTVYELDHDPRGADI 86 (139)
Q Consensus 45 ~~Vvif~~~~Cp~C~~ak~~L---~~~~v~~~~~~vd~~~~~~~~ 86 (139)
.-|.+|....|..-..++.++ ++-|++|..+.+....+...+
T Consensus 3 Pai~i~~~~~~~~~~~lrev~aGIEEEGip~~~~~~~~~~d~~~l 47 (112)
T PF02288_consen 3 PAIGIYVSKTIEGSDVLREVLAGIEEEGIPYRVVRVSDTSDVAFL 47 (112)
T ss_dssp TTECCCEECTTTCHHHHHHHHHHHHCTT-EEEEEEECSSSSHHHH
T ss_pred CEEEEEecCCCcchhHHHHHHhHhcccCCCeEEEeecCcccHHHH
Confidence 457788888887755556654 688999999877777776543
No 422
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=20.72 E-value=4.7e+02 Score=21.32 Aligned_cols=90 Identities=12% Similarity=0.218 Sum_probs=50.4
Q ss_pred CCCCccHHHHHHHHh-----cCCcEEEEEcCCChhHHHHHHHHhhCCCCCeEEEecCCCChHHHHHHHHHHhCC--CCCC
Q 039295 28 NMPREEPMEKVARVA-----SESAVVIFSVSSCCMCHAVKRLFCGMGVNPTVYELDHDPRGADIERVLMRLLAN--SSAV 100 (139)
Q Consensus 28 ~~~~~~~~~~~~~~i-----~~~~Vvif~~~~Cp~C~~ak~~L~~~~v~~~~~~vd~~~~~~~~~~~L~~~~g~--~~~~ 100 (139)
.+++....+.+.++. ...+|++|-..+=..+..+-.+|...|.. ...++---. ..+....+.... ..
T Consensus 67 ~lv~~~l~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~~--v~~L~GG~~--awr~~~~~~~~~~~~~-- 140 (345)
T PRK11784 67 ALVAGNIAAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGID--VPRLEGGYK--AYRRFVIDTLEEAPAQ-- 140 (345)
T ss_pred hhcchhHHHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCCC--cEEEcCCHH--HHHHhhHHHHhhhccc--
Confidence 334445555555442 34579999744334567777889999975 344543322 222233222221 22
Q ss_pred CccEEEECCEEEeccHHHHHHHHc
Q 039295 101 PVPIVFIGGKLIGAMDRVMASHIN 124 (139)
Q Consensus 101 ~vP~Ifi~g~~iGG~~~l~~l~~~ 124 (139)
.+.+.++|.-..|-++++....+
T Consensus 141 -~~~ivl~G~TGsGKT~iL~~L~~ 163 (345)
T PRK11784 141 -FPLVVLGGNTGSGKTELLQALAN 163 (345)
T ss_pred -CceEecCCCCcccHHHHHHHHHh
Confidence 45677888877777777665443
No 423
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=20.52 E-value=1.4e+02 Score=18.79 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=29.5
Q ss_pred EEEEEcCCChhHHHH----HHHHhhC-CCC--CeEEEecCCCChHHHHHHHHHHhCCCCCCCccEE
Q 039295 47 VVIFSVSSCCMCHAV----KRLFCGM-GVN--PTVYELDHDPRGADIERVLMRLLANSSAVPVPIV 105 (139)
Q Consensus 47 Vvif~~~~Cp~C~~a----k~~L~~~-~v~--~~~~~vd~~~~~~~~~~~L~~~~g~~~~~~vP~I 105 (139)
..+|....-|.+.++ ++++++. +-+ .+++||.++| ++++..+.-. .|++
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P-------~lAe~~~ivA---tPtL 59 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQP-------QLAEEDKIVA---TPTL 59 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCH-------hHHhhCCEEE---echh
Confidence 567777777777654 5555554 333 4677777776 4555555444 5654
No 424
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=20.38 E-value=2.9e+02 Score=20.01 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=10.3
Q ss_pred cEEEEEcC--CChhHH
Q 039295 46 AVVIFSVS--SCCMCH 59 (139)
Q Consensus 46 ~Vvif~~~--~Cp~C~ 59 (139)
+|++|.-| ++|-|.
T Consensus 32 ~VVLyFYPk~~TpgCT 47 (157)
T COG1225 32 PVVLYFYPKDFTPGCT 47 (157)
T ss_pred cEEEEECCCCCCCcch
Confidence 78887754 788885
No 425
>PF15616 TerY-C: TerY-C metal binding domain
Probab=20.28 E-value=31 Score=24.39 Aligned_cols=16 Identities=13% Similarity=0.413 Sum_probs=11.3
Q ss_pred EEEcCCChhHHHHHHH
Q 039295 49 IFSVSSCCMCHAVKRL 64 (139)
Q Consensus 49 if~~~~Cp~C~~ak~~ 64 (139)
+.+.|+||+|-....+
T Consensus 74 L~g~PgCP~CGn~~~f 89 (131)
T PF15616_consen 74 LIGAPGCPHCGNQYAF 89 (131)
T ss_pred hcCCCCCCCCcChhcE
Confidence 3456899999766544
No 426
>KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=20.21 E-value=86 Score=28.74 Aligned_cols=47 Identities=11% Similarity=0.015 Sum_probs=32.4
Q ss_pred HhcCCcEEEEEcCCChhHHHHHHHHhhCCC-CCeEEEecCCCChHHHHHHHHHHhCCC
Q 039295 41 VASESAVVIFSVSSCCMCHAVKRLFCGMGV-NPTVYELDHDPRGADIERVLMRLLANS 97 (139)
Q Consensus 41 ~i~~~~Vvif~~~~Cp~C~~ak~~L~~~~v-~~~~~~vd~~~~~~~~~~~L~~~~g~~ 97 (139)
...+..+.||++.|||. ++.+ +|.++-+|.+.. .++++.|.++.|.+
T Consensus 1051 ~k~~~sL~i~vRRW~Ps---------~~e~~pFQEV~Ld~~~~-~E~Re~LS~ISgIP 1098 (1203)
T KOG4598|consen 1051 GKPGESLPIMVRRWRPS---------TVEVNPFQEVLLDANAE-VEFREALSKISGIP 1098 (1203)
T ss_pred CCCCccchhhheecccc---------ceecCCceeEEecCcch-HHHHHHHHHhcCCc
Confidence 33445689999999996 3333 477777777643 36777888887754
No 427
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=20.13 E-value=4.8e+02 Score=21.23 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=32.2
Q ss_pred CcEEEEEcC----CChhHHHHHHHHhhCCCCCeEEE-ecCCCChHHHHHHHHH
Q 039295 45 SAVVIFSVS----SCCMCHAVKRLFCGMGVNPTVYE-LDHDPRGADIERVLMR 92 (139)
Q Consensus 45 ~~Vvif~~~----~Cp~C~~ak~~L~~~~v~~~~~~-vd~~~~~~~~~~~L~~ 92 (139)
.++.|.+.+ .++...++...|++.++++..++ +..++....+.+....
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~ 79 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKL 79 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHH
Confidence 456666543 37778999999999999876664 6666665555444433
No 428
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=20.01 E-value=2.5e+02 Score=19.88 Aligned_cols=39 Identities=23% Similarity=0.134 Sum_probs=31.8
Q ss_pred CCccHHHHHHHHhcCCcEEEEEcCCChhHHHHHHHHhhC
Q 039295 30 PREEPMEKVARVASESAVVIFSVSSCCMCHAVKRLFCGM 68 (139)
Q Consensus 30 ~~~~~~~~~~~~i~~~~Vvif~~~~Cp~C~~ak~~L~~~ 68 (139)
..+.+.++++++.+...|+|||+..=.|+..+-..|+-.
T Consensus 43 ~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~~il~~ldp~ 81 (162)
T TIGR02251 43 KRPHVDEFLERVSKWYELVIFTASLEEYADPVLDILDRG 81 (162)
T ss_pred ECCCHHHHHHHHHhcCEEEEEcCCcHHHHHHHHHHHCcC
Confidence 567899999999888899999999888877776666643
Done!