BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039296
(116 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A0D|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain
pdb|4B1I|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Oa-adp-hpd
Length = 531
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
++L +ATGNWGCGAFGGD LKA+IQ LAA+ A R V+Y+TFG + ++++ + ++
Sbjct: 415 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELMRDIYSMHIFL 473
Query: 62 LSHEWTVRDLWNMMVEYSSQ 81
+ TV D++ +++ Y ++
Sbjct: 474 TERKLTVGDVYKLLLRYYNE 493
>pdb|4B1J|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Adp-hpd
Length = 531
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
++L +ATGNWGCGAFGGD LKA+IQ LAA+ A R V+Y+TFG + ++++ + ++
Sbjct: 415 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELMRDIYSMHIFL 473
Query: 62 LSHEWTVRDLWNMMVEYSSQ 81
+ TV D++ +++ Y ++
Sbjct: 474 TERKLTVGDVYKLLLRYYNE 493
>pdb|4B1H|A Chain A, Structure Of Human Parg Catalytic Domain In Complex With
Adp-ribose
Length = 531
Score = 53.1 bits (126), Expect = 3e-08, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWI 61
++L +ATGNWGCGAFGGD LKA+IQ LAA+ A R V+Y+TFG + ++++ + ++
Sbjct: 415 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELMRDIYSMHIFL 473
Query: 62 LSHEWTVRDLWNMMVEYSSQ 81
+ TV D++ +++ Y ++
Sbjct: 474 TERKLTVGDVYKLLLRYYNE 493
>pdb|4B1G|A Chain A, Structure Of Unliganded Human Parg Catalytic Domain
Length = 531
Score = 52.4 bits (124), Expect = 7e-08, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDAL-QNLDQITQWI 61
++L +ATGNWGCGAFGGD LKA+IQ LAA+ A R V+Y+TFG L +++ ++
Sbjct: 415 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFGDSELXRDIYSXHIFL 473
Query: 62 LSHEWTVRDLWNMMVEYSSQ 81
+ TV D++ +++ Y ++
Sbjct: 474 TERKLTVGDVYKLLLRYYNE 493
>pdb|4FC2|A Chain A, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|B Chain B, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|C Chain C, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
pdb|4FC2|D Chain D, Crystal Structure Of Mouse Poly(Adp-Ribose) Glycohydrolase
(Parg) Catalytic Domain
Length = 521
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/45 (64%), Positives = 36/45 (80%), Gaps = 1/45 (2%)
Query: 3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG 47
++L +ATGNWGCGAFGGD LKA+IQ LAA+ A R V+Y+TFG
Sbjct: 415 ENLSAVATGNWGCGAFGGDARLKALIQILAAAAAERD-VVYFTFG 458
>pdb|3UEK|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase
pdb|3UEL|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|B Chain B, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
pdb|3UEL|C Chain C, Crystal Structure Of The Catalytic Domain Of Rat Poly
(Adp-Ribose) Glycohydrolase Bound To Adp-Hpd
Length = 588
Score = 46.2 bits (108), Expect = 5e-06, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 17/82 (20%)
Query: 3 KDLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWIL 62
++L +ATGNWGCGAFGGD LKA+IQ LAA+ A R V+Y+TFG L
Sbjct: 472 ENLSAVATGNWGCGAFGGDARLKALIQLLAAAAAERD-VVYFTFGDSEL----------- 519
Query: 63 SHEWTVRDLWNMMVEYSSQRLN 84
+RD+++M + ++LN
Sbjct: 520 -----MRDIYSMHTFLTERKLN 536
>pdb|4EPP|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila.
pdb|4EPP|B Chain B, Canonical Poly(Adp-Ribose) Glycohydrolase From Tetrahymena
Thermophila
Length = 477
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 5 LPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVL 42
L I+TG WGCGAF G +LK IQW+A+S++++ ++
Sbjct: 378 LKTISTGKWGCGAFLGVFDLKFAIQWIASSRSNKKMII 415
>pdb|4EPQ|A Chain A, Canonical Poly(Adp-Ribose) Glycohydrolase Rbpi Inhibitor
Complex From Tetrahymena Thermophila
Length = 477
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 28/38 (73%)
Query: 5 LPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVL 42
L I+TG WGCGAF G +LK IQW+A+S++++ ++
Sbjct: 378 LKTISTGKWGCGAFLGVFDLKFAIQWIASSRSNKKMII 415
>pdb|1SJ2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
pdb|1SJ2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
Catalase-Peroxidase
Length = 743
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 2 GKDLPGIA--TGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQ 56
GKD G TG+ FG + EL+A+++ A A FV + D + NLD+
Sbjct: 683 GKDGSGKVKWTGSRVDLVFGSNSELRALVEVYGADDAQPKFVQDFVAAWDKVMNLDR 739
>pdb|2CCD|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCD|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 2 GKDLPGIA--TGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQ 56
GKD G TG+ FG + EL+A+++ A A FV + D + NLD+
Sbjct: 680 GKDGSGKVKWTGSRVDLVFGSNSELRALVEVYGADDAQPKFVQDFVAAWDKVMNLDR 736
>pdb|2CCA|A Chain A, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
pdb|2CCA|B Chain B, Crystal Structure Of The Catalase-Peroxidase (Katg) And
S315t Mutant From Mycobacterium Tuberculosis
Length = 740
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 2 GKDLPGIA--TGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQ 56
GKD G TG+ FG + EL+A+++ A A FV + D + NLD+
Sbjct: 680 GKDGSGKVKWTGSRVDLVFGSNSELRALVEVYGADDAQPKFVQDFVAAWDKVMNLDR 736
>pdb|3SIG|A Chain A, The X-Ray Crystal Structure Of Poly(Adp-Ribose)
Glycohydrolase (Parg) Bound To Adp-Ribose From
Thermomonospora Curvata
pdb|3SIH|A Chain A, The X-Ray Crystal Structure Of Poly(Adp-Ribose)
Glycohydrolase (Parg) From Thermomonospora Curvata
pdb|3SII|A Chain A, The X-Ray Crystal Structure Of Poly(Adp-Ribose)
Glycohydrolase Bound To The Inhibitor Adp-Hpd From
Thermomonospora Curvata
Length = 277
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 11 GNWGCGAFGGDP 22
G WGCG FG DP
Sbjct: 218 GAWGCGVFGNDP 229
>pdb|3SIJ|A Chain A, The X-Ray Crystal Structure Of Poly(Adp-Ribose)
Glycohydrolase E115a Mutant From Thermomonospora Curvata
Length = 277
Score = 26.9 bits (58), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 11 GNWGCGAFGGDP 22
G WGCG FG DP
Sbjct: 218 GAWGCGVFGNDP 229
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 25.8 bits (55), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 92 FAWLLPSLTSHNFISPASDFNYPA 115
F + S SHN +P++D NYP+
Sbjct: 521 FKTIARSSASHNCSNPSADLNYPS 544
>pdb|9RUB|A Chain A, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
Carboxylase Complexed With Its Substrate, Ribulose-1,5-
Bisphosphate
pdb|9RUB|B Chain B, Crystal Structure Of Activated Ribulose-1,5-Bisphosphate
Carboxylase Complexed With Its Substrate, Ribulose-1,5-
Bisphosphate
Length = 466
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 7 GIATGNWGCGAFGGDPELKAIIQWLAASQASRPF 40
GI TG G G G+ +AI L +A PF
Sbjct: 319 GIHTGTMGFGKMEGESSDRAIAYMLTQDEAQGPF 352
>pdb|1RBA|A Chain A, Substitution Of Asp193 To Asn At The Active Site Of
Ribulose-1,5- Bisphosphate Carboxylase Results In
Conformational Changes
pdb|1RBA|B Chain B, Substitution Of Asp193 To Asn At The Active Site Of
Ribulose-1,5- Bisphosphate Carboxylase Results In
Conformational Changes
Length = 466
Score = 25.4 bits (54), Expect = 9.4, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 16/34 (47%)
Query: 7 GIATGNWGCGAFGGDPELKAIIQWLAASQASRPF 40
GI TG G G G+ +AI L +A PF
Sbjct: 319 GIHTGTMGFGKMEGESSDRAIAYMLTQDEAQGPF 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,972,534
Number of Sequences: 62578
Number of extensions: 142407
Number of successful extensions: 276
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 259
Number of HSP's gapped (non-prelim): 17
length of query: 116
length of database: 14,973,337
effective HSP length: 79
effective length of query: 37
effective length of database: 10,029,675
effective search space: 371097975
effective search space used: 371097975
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)