Query 039296
Match_columns 116
No_of_seqs 109 out of 237
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:58:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039296.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039296hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a0d_A Poly(ADP-ribose) glycoh 100.0 7.9E-35 2.7E-39 247.9 11.9 100 5-105 417-521 (531)
2 3uek_A Poly(ADP-ribose) glycoh 100.0 1.4E-34 4.9E-39 248.3 11.8 97 5-102 474-575 (588)
3 4epp_A Poly(ADP-ribose) glycoh 100.0 5.4E-30 1.8E-34 215.8 7.9 95 4-103 377-472 (477)
4 3sig_A PArg, poly(ADP-ribose) 94.7 0.016 5.5E-07 45.7 2.6 20 7-26 214-233 (277)
5 2g8g_A Capsid; adeno-associate 82.1 0.5 1.7E-05 40.3 1.7 20 2-21 1-21 (524)
6 3ng9_A Capsid protein; beta ba 60.1 2.9 9.9E-05 37.1 1.2 21 2-22 217-238 (736)
7 1yqe_A Hypothetical UPF0204 pr 58.4 3.1 0.00011 32.6 1.0 28 7-34 90-127 (282)
8 3gqe_A Non-structural protein 57.5 36 0.0012 24.3 6.6 54 7-60 105-160 (168)
9 1ukx_A GCN2, GCN2 EIF2alpha ki 57.1 10 0.00035 25.4 3.4 43 67-109 94-136 (137)
10 5nul_A Flavodoxin; electron tr 56.4 6.1 0.00021 25.9 2.1 45 23-67 65-109 (138)
11 2fz5_A Flavodoxin; alpha/beta 55.9 8.9 0.00031 24.7 2.9 59 6-67 50-110 (137)
12 3ntt_A Capsid protein; gene th 55.0 3.2 0.00011 36.8 0.6 21 2-22 207-228 (724)
13 3rxy_A NIF3 protein; structura 52.9 11 0.00039 29.6 3.4 50 32-81 124-177 (278)
14 3nav_A Tryptophan synthase alp 51.4 54 0.0018 25.1 7.1 63 19-81 28-94 (271)
15 5nul_A Flavodoxin; electron tr 50.9 8 0.00027 25.3 2.0 50 7-62 84-136 (138)
16 2gfq_A UPF0204 protein PH0006; 50.6 4.6 0.00016 32.0 0.8 28 7-34 112-149 (298)
17 3vnd_A TSA, tryptophan synthas 50.5 54 0.0018 25.0 6.9 63 19-81 26-92 (267)
18 1rfz_A Hypothetical protein AP 48.0 20 0.00067 26.2 3.9 22 57-78 16-37 (168)
19 2x47_A Macro domain-containing 45.5 86 0.003 23.4 7.3 52 7-58 171-228 (235)
20 3hly_A Flavodoxin-like domain; 45.0 10 0.00035 26.0 1.9 33 15-47 59-92 (161)
21 1tlq_A Hypothetical protein YP 42.5 25 0.00084 26.3 3.7 43 57-99 15-57 (189)
22 2jyc_A Uncharacterized protein 40.5 33 0.0011 24.1 4.0 18 7-24 122-139 (160)
23 2q9u_A A-type flavoprotein; fl 39.4 14 0.00049 28.6 2.1 20 22-41 324-345 (414)
24 1y9i_A Low temperature require 39.0 33 0.0011 25.3 3.9 23 56-78 13-35 (178)
25 3hly_A Flavodoxin-like domain; 38.8 29 0.00098 23.7 3.4 52 7-61 87-138 (161)
26 4ggj_A Mitochondrial cardiolip 38.5 20 0.00068 25.6 2.6 54 15-72 39-92 (196)
27 1vhu_A Hypothetical protein AF 38.3 1.1E+02 0.0039 22.2 6.9 54 7-60 143-199 (211)
28 2jml_A DNA binding domain/tran 37.3 52 0.0018 19.9 4.2 33 45-77 44-76 (81)
29 3tha_A Tryptophan synthase alp 37.2 49 0.0017 25.2 4.8 61 19-79 22-86 (252)
30 1got_G GT-gamma; complex (GTP- 37.0 72 0.0025 20.0 4.8 33 51-83 19-55 (73)
31 4dpv_Z Protein (parvovirus coa 36.8 7.6 0.00026 33.4 0.1 20 2-21 34-56 (584)
32 2eee_A Uncharacterized protein 36.3 39 0.0013 23.2 3.8 18 7-24 111-128 (149)
33 1spv_A Putative polyprotein/ph 34.9 1.2E+02 0.0041 21.5 6.9 51 7-58 115-171 (184)
34 2qia_A UDP-N-acetylglucosamine 34.8 1E+02 0.0036 22.2 6.2 51 44-97 205-255 (262)
35 2fg1_A Conserved hypothetical 34.5 46 0.0016 22.9 3.9 18 7-24 120-137 (158)
36 2dx6_A Hypothetical protein TT 34.5 1.1E+02 0.0038 20.9 6.4 48 7-56 107-157 (159)
37 1e5d_A Rubredoxin\:oxygen oxid 32.5 41 0.0014 25.6 3.7 59 5-67 306-365 (402)
38 3nr7_A DNA-binding protein H-N 31.0 74 0.0025 20.5 4.2 25 52-76 59-83 (86)
39 1twf_J DNA-directed RNA polyme 31.0 17 0.00058 23.0 1.0 54 43-97 7-62 (70)
40 2ld7_B Paired amphipathic heli 30.6 99 0.0034 19.2 4.7 42 52-99 29-70 (75)
41 1ujp_A Tryptophan synthase alp 29.8 1.8E+02 0.0061 21.9 7.0 64 18-81 23-89 (271)
42 1wh4_A IRAK4, interleukin-1 re 29.7 73 0.0025 21.8 4.2 22 57-78 77-98 (127)
43 4gel_A Mitochondrial cardiolip 29.4 17 0.00057 25.8 0.9 51 18-72 54-104 (220)
44 1z14_A VP2; prototype strain, 28.9 17 0.00058 31.2 1.0 16 6-21 2-20 (549)
45 3pzg_A Mannan endo-1,4-beta-ma 28.7 91 0.0031 24.8 5.2 50 17-68 38-116 (383)
46 1ycg_A Nitric oxide reductase; 28.0 33 0.0011 26.1 2.4 41 4-47 304-345 (398)
47 3mn2_A Probable ARAC family tr 27.8 88 0.003 19.3 4.2 17 21-37 1-17 (108)
48 4ayb_N DNA-directed RNA polyme 27.1 16 0.00054 22.9 0.4 54 42-97 6-61 (66)
49 2vri_A Non-structural protein 26.8 1.1E+02 0.0038 21.5 5.0 49 7-58 122-170 (174)
50 1vp7_A Exodeoxyribonuclease VI 26.6 1.1E+02 0.0036 20.4 4.5 33 50-82 35-73 (100)
51 2ebq_A Nuclear pore complex pr 25.9 25 0.00087 20.4 1.1 17 2-18 1-17 (47)
52 1yob_A Flavodoxin 2, flavodoxi 25.8 35 0.0012 23.5 2.0 63 4-67 48-123 (179)
53 3c5t_B Exendin-4, exenatide; l 25.8 28 0.00096 18.7 1.2 19 89-107 12-30 (31)
54 4e6u_A Acyl-[acyl-carrier-prot 25.6 1.1E+02 0.0038 22.2 4.9 50 45-97 208-258 (265)
55 3zed_D Capsid protein VP3; vir 25.5 1.9E+02 0.0067 22.1 6.2 53 16-81 3-55 (242)
56 2day_A Ring finger protein 25; 25.3 85 0.0029 20.4 3.9 35 70-104 93-127 (128)
57 2ebr_A Nuclear pore complex pr 25.3 34 0.0012 19.8 1.6 16 2-17 1-16 (47)
58 3bpy_A FORK head domain, forkh 24.9 1E+02 0.0035 19.6 4.1 47 56-102 16-65 (85)
59 1xn7_A Hypothetical protein YH 24.9 62 0.0021 20.1 2.9 22 54-75 4-26 (78)
60 1s58_A B19 parvovirus capsid; 24.7 17 0.00058 31.2 0.2 19 3-21 15-34 (554)
61 2ekc_A AQ_1548, tryptophan syn 24.6 2.1E+02 0.0073 21.1 6.9 63 19-81 25-91 (262)
62 2vkc_A NEDD4-binding protein 2 24.1 39 0.0013 23.0 2.0 30 2-32 86-116 (135)
63 2z5e_A Proteasome assembling c 23.5 1.5E+02 0.0051 20.1 4.9 45 21-65 72-120 (122)
64 1k3v_A Capsid protein VP2; ico 23.0 24 0.00082 30.4 0.8 20 2-21 35-57 (579)
65 1i8x_A Granulin-1; two beta-ha 22.7 15 0.0005 19.6 -0.4 11 8-18 19-29 (30)
66 2akf_A Coronin-1A; coiled coil 22.5 53 0.0018 17.5 1.8 15 49-63 6-20 (32)
67 1d2z_A Death domain of pelle; 22.4 70 0.0024 21.3 3.0 17 62-78 71-87 (108)
68 2vz4_A Tipal, HTH-type transcr 22.4 1.4E+02 0.0048 19.0 4.4 33 43-76 37-69 (108)
69 2a9i_A IRAK-4, interleukin-1 r 22.1 71 0.0024 21.4 2.9 22 57-78 70-91 (113)
70 3l2c_A Forkhead box protein O4 21.9 1.2E+02 0.0041 20.3 4.1 48 55-102 34-84 (110)
71 3ejg_A Non-structural protein 21.4 2.4E+02 0.0082 20.5 6.2 49 7-58 143-191 (193)
72 4b7l_A Filamin-B; structural p 21.2 2.3E+02 0.008 22.0 6.2 61 50-110 76-164 (347)
73 1mus_A TN5 transposase; hairpi 21.0 1.2E+02 0.0041 25.2 4.7 63 19-82 22-85 (477)
74 1q06_A Transcriptional regulat 20.6 1.9E+02 0.0064 19.2 4.9 33 45-78 38-70 (135)
75 2a5l_A Trp repressor binding p 20.5 1.1E+02 0.0037 20.7 3.7 59 5-66 74-140 (200)
76 2ark_A Flavodoxin; FMN, struct 20.5 68 0.0023 22.0 2.7 46 21-66 68-120 (188)
77 3oio_A Transcriptional regulat 20.3 65 0.0022 20.2 2.4 15 21-35 6-20 (113)
78 3c01_A Surface presentation of 20.2 39 0.0013 19.7 1.1 20 19-38 14-33 (48)
79 3m0z_A Putative aldolase; MCSG 20.2 1.3E+02 0.0046 23.1 4.5 59 6-66 129-188 (249)
80 2ohh_A Type A flavoprotein FPR 20.2 26 0.00088 26.8 0.4 41 4-47 309-353 (404)
No 1
>4a0d_A Poly(ADP-ribose) glycohydrolase; 1.75A {Homo sapiens} PDB: 4fc2_A
Probab=100.00 E-value=7.9e-35 Score=247.91 Aligned_cols=100 Identities=34% Similarity=0.709 Sum_probs=87.6
Q ss_pred CCceeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHH-HHHHHHHHHHHhCCccHHHHHHHHHHHHHhhh
Q 039296 5 LPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDAL-QNLDQITQWILSHEWTVRDLWNMMVEYSSQRL 83 (116)
Q Consensus 5 ~~~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l-~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~~~ 83 (116)
..+|+|||||||||||||+||+||||||||+||||+ +||||+|+++ +++.++++.++++++|||+||++|.+|+++..
T Consensus 417 ~~~IaTGnWGCGaFgGD~~LK~lIQ~lAAs~agr~l-~Y~tF~d~~l~~~l~~~~~~l~~~~~TVg~Ly~~L~~Y~~~~~ 495 (531)
T 4a0d_A 417 LSAVATGNWGCGAFGGDARLKALIQILAAAAAERDV-VYFTFGDSELMRDIYSMHIFLTERKLTVGDVYKLLLRYYNEEC 495 (531)
T ss_dssp CCCEEEECTTCSTTCCCHHHHHHHHHHHHHHTTCCE-EEECTTCHHHHHHHHHHHHHHHHTTCBHHHHHHHHHHHHHHHT
T ss_pred CCceEecCcccccCCCCHHHHHHHHHHHhhcCCCce-EEEeCCCHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999995 6999999887 68999999999999999999999999988764
Q ss_pred cC----CCcchhHHhhhhhhccCCCC
Q 039296 84 NG----RTNLGFFAWLLPSLTSHNFI 105 (116)
Q Consensus 84 ~~----~~~~~lf~wLl~~ls~~~~~ 105 (116)
+. ....+||+||++++++-...
T Consensus 496 ~~~~~~~~~~~lf~~i~~~~~~~~~~ 521 (531)
T 4a0d_A 496 RNCSTPGPDIKLYPFIYHAVESCAET 521 (531)
T ss_dssp TTCCSSSCSSCHHHHHHHHHHTC---
T ss_pred ccccCCCCcchHHHHHHHHhhccCCC
Confidence 33 34579999999999855433
No 2
>3uek_A Poly(ADP-ribose) glycohydrolase; mammalian PArg, macrodomain; 1.95A {Rattus norvegicus} PDB: 3uel_A*
Probab=100.00 E-value=1.4e-34 Score=248.27 Aligned_cols=97 Identities=34% Similarity=0.717 Sum_probs=88.7
Q ss_pred CCceeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHH-HHHHHHHHHHHhCCccHHHHHHHHHHHHHhhh
Q 039296 5 LPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDAL-QNLDQITQWILSHEWTVRDLWNMMVEYSSQRL 83 (116)
Q Consensus 5 ~~~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l-~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~~~ 83 (116)
..+|+||||||||||||++||++|||||||+|||| +.||||+|+++ ++|.+|++++++++|||||||++|++|+++..
T Consensus 474 ~~~IaTGnWGCGafggd~~LK~liQ~lAAS~ag~~-l~Y~tF~D~el~~~l~~v~~~L~~k~~TVGdLy~~L~~Y~~~~~ 552 (588)
T 3uek_A 474 LSAVATGNWGCGAFGGDARLKALIQLLAAAAAERD-VVYFTFGDSELMRDIYSMHTFLTERKLNVGKVYRLLLRYYREEC 552 (588)
T ss_dssp CCCEEEECTTCSTTCCCHHHHHHHHHHHHHHTTCC-EEEECTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred CCceecCCcCccccCCCHHHHHHHHHHHHHhcCCc-eEEeecCcHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999 56999999988 58999999999999999999999999998753
Q ss_pred ----cCCCcchhHHhhhhhhccC
Q 039296 84 ----NGRTNLGFFAWLLPSLTSH 102 (116)
Q Consensus 84 ----~~~~~~~lf~wLl~~ls~~ 102 (116)
+++++.+||+|||+++.+.
T Consensus 553 ~~~~~~~~~~sLfdwLl~~~~~~ 575 (588)
T 3uek_A 553 RDCSSPGPDTKLYPFIYHAAESS 575 (588)
T ss_dssp TTCCSSSCSSCHHHHHHHHHHC-
T ss_pred hhhccCCCCCcHHHHHHHhccCC
Confidence 3678899999999998854
No 3
>4epp_A Poly(ADP-ribose) glycohydrolase; marco domain, PAR; HET: APR; 1.95A {Tetrahymena thermophila} PDB: 4epq_A*
Probab=99.96 E-value=5.4e-30 Score=215.80 Aligned_cols=95 Identities=24% Similarity=0.520 Sum_probs=85.0
Q ss_pred CCCceeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHH-HHHHHHHHHHHhCCccHHHHHHHHHHHHHhh
Q 039296 4 DLPGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDAL-QNLDQITQWILSHEWTVRDLWNMMVEYSSQR 82 (116)
Q Consensus 4 ~~~~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l-~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~~ 82 (116)
+..+|+|||||||||||||+||+||||||||+|||| |+||||+|+++ ++|++|++.++++++||+ |++|++|+...
T Consensus 377 ~~~~IaTGnWGCGaFgGD~~LK~LIQ~lAAs~agr~-L~Y~tf~d~el~~~l~~~~~~i~~~~~TV~--~~ll~~y~~s~ 453 (477)
T 4epp_A 377 QLKTISTGKWGCGAFLGVFDLKFAIQWIASSRSNKK-MIICTFQDEQTTKQIQQVFDLYKQKNASIF--LKLVMDYPNSK 453 (477)
T ss_dssp TCCEEEECSTTSSTTCCCHHHHHHHHHHHHHHTTCE-EEEECSSCHHHHHHHHHHHHHHTTSBHHHH--HHHHHTSTTST
T ss_pred CCCeeEecCcCcccCCCCHHHHHHHHHHHHHhcCCC-EEEecCCcHHHHHHHHHHHHHHHhcCcEeH--HHHHHhccccc
Confidence 457999999999999999999999999999999999 67999999998 589999999999999998 99999997664
Q ss_pred hcCCCcchhHHhhhhhhccCC
Q 039296 83 LNGRTNLGFFAWLLPSLTSHN 103 (116)
Q Consensus 83 ~~~~~~~~lf~wLl~~ls~~~ 103 (116)
. ....++|+|+++--.+.+
T Consensus 454 ~--~~~~t~~~~~~~~~~~~~ 472 (477)
T 4epp_A 454 Y--MEDYTLLEYLIELGKEKA 472 (477)
T ss_dssp T--TTTCCHHHHHHHHHHHCC
T ss_pred c--cchhhHHHHHHHhhhhcc
Confidence 3 257889999998766554
No 4
>3sig_A PArg, poly(ADP-ribose) glycohydrolase; HET: AR6; 1.28A {Thermomonospora curvata} PDB: 3sih_A 3sii_A* 3sij_A
Probab=94.68 E-value=0.016 Score=45.73 Aligned_cols=20 Identities=50% Similarity=1.187 Sum_probs=17.7
Q ss_pred ceeccccCCccCCCCHHHHH
Q 039296 7 GIATGNWGCGAFGGDPELKA 26 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qLK~ 26 (116)
.|+-|-||||+|+++|+.-+
T Consensus 214 ~LVLGA~GCGvfgnpp~~VA 233 (277)
T 3sig_A 214 RLVLGAWGCGVFGNDPAQVA 233 (277)
T ss_dssp EEEECCTTSSTTCCCHHHHH
T ss_pred EEEECCcccCcCCCCHHHHH
Confidence 58889999999999998755
No 5
>2g8g_A Capsid; adeno-associated virus serotype 4, gene therapy, icosahedral virus; HET: D5M; 3.20A {Adeno-associated virus - 4}
Probab=82.11 E-value=0.5 Score=40.31 Aligned_cols=20 Identities=35% Similarity=0.833 Sum_probs=18.8
Q ss_pred CCCCCceeccccCCcc-CCCC
Q 039296 2 GKDLPGIATGNWGCGA-FGGD 21 (116)
Q Consensus 2 ~~~~~~I~TGnWGCGa-FgGD 21 (116)
|.+.+.++||.|=||+ |.||
T Consensus 1 g~~GVG~StG~W~~gt~f~~~ 21 (524)
T 2g8g_A 1 GADGVGNASGDWHCDSTWSEG 21 (524)
T ss_dssp CBCCTTSCSSCCCCCCBCCSS
T ss_pred CCCccccccccccCCCEECCC
Confidence 7789999999999999 9998
No 6
>3ng9_A Capsid protein; beta barrel, single-stranded DNA V parvovirus, icosahedral virus; HET: ADE; 2.50A {Adeno-associated virus - 1} PDB: 3kic_A* 3kie_A* 3j1q_A 3oah_A* 1vu0_U 1vu1_o 3tsx_A 3shm_A 1lp3_A 3j1s_A 2qa0_A 3ra2_A 3ra4_A* 3ra8_A* 3ra9_A* 3raa_A* 3ux1_A
Probab=60.14 E-value=2.9 Score=37.06 Aligned_cols=21 Identities=48% Similarity=0.919 Sum_probs=18.3
Q ss_pred CCCCCceeccccCCcc-CCCCH
Q 039296 2 GKDLPGIATGNWGCGA-FGGDP 22 (116)
Q Consensus 2 ~~~~~~I~TGnWGCGa-FgGD~ 22 (116)
|++.+.++||.|=||+ |.+|.
T Consensus 217 g~~GVG~stG~W~~gt~f~~n~ 238 (736)
T 3ng9_A 217 GADGVGNASGNWHCDSTWLGDR 238 (736)
T ss_dssp CCCCTTSCSCCBCCEEEECSSE
T ss_pred CCCccccccccccCCcEECCCE
Confidence 5678899999999999 88884
No 7
>1yqe_A Hypothetical UPF0204 protein AF0625; AF0625,sulfur SAD, structural genomics, PSI, protein structure initiative; 1.83A {Archaeoglobus fulgidus} SCOP: c.56.7.1
Probab=58.36 E-value=3.1 Score=32.65 Aligned_cols=28 Identities=32% Similarity=0.582 Sum_probs=21.8
Q ss_pred cee-ccccCCccCCCCH--------HH-HHHHHHHHHH
Q 039296 7 GIA-TGNWGCGAFGGDP--------EL-KAIIQWLAAS 34 (116)
Q Consensus 7 ~I~-TGnWGCGaFgGD~--------qL-K~lIQwiAAS 34 (116)
+++ |||||=+.|||+| .+ +.+++-|-..
T Consensus 90 TvH~tGN~~~a~~GG~p~~la~a~P~~~~~~L~~l~~~ 127 (282)
T 1yqe_A 90 TVHVSGNVGTADFGGKPYSLAKPSPQTMKNYVLALRER 127 (282)
T ss_dssp EEECCBCSSCCTTSSCTTCBCCBCHHHHHHHHHHHHTT
T ss_pred EEeCCCCCCccccCCCCCccccCCHHHHHHHHHHHHHH
Confidence 456 9999988899965 44 8888888665
No 8
>3gqe_A Non-structural protein 3; macro domain, X domain, venezuelan equine encephalitis virus alphavirus; HET: BCN; 2.30A {Venezuelan equine encephalitis virus} PDB: 3gqo_A*
Probab=57.53 E-value=36 Score=24.28 Aligned_cols=54 Identities=17% Similarity=0.151 Sum_probs=37.3
Q ss_pred ceeccccCCccCCCC--HHHHHHHHHHHHHhcCCCeEeeeccChhHHHHHHHHHHH
Q 039296 7 GIATGNWGCGAFGGD--PELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQW 60 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD--~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~~~ 60 (116)
.||----|||.||-. .-.+.+.+++.+.--....+.++-|+++.++.|++.+..
T Consensus 105 SIAfP~IstG~~g~p~~~aa~~i~~~l~~~~~~~~~V~iv~fd~~~~~~~~~~~~~ 160 (168)
T 3gqe_A 105 SVAIPLLSTGIFSGNKDRLTQSLNHLLTALDTTDADVAIYCRDKKWEMTLKEAVAR 160 (168)
T ss_dssp EEEEECTTSSTTSCSSCCHHHHHHHHHHHHTTSCCEEEEEESCHHHHHHHHHHHHH
T ss_pred EEEECCcccCCCCCCHHHHHHHHHHHHHHCCCCCCeEEEEEcCHHHHHHHHHHHHh
Confidence 455556688887765 556777888876544333356778999888888877653
No 9
>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3
Probab=57.12 E-value=10 Score=25.36 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHHhhhcCCCcchhHHhhhhhhccCCCCCCCC
Q 039296 67 TVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHNFISPAS 109 (116)
Q Consensus 67 tVgdL~~~L~~y~~~~~~~~~~~~lf~wLl~~ls~~~~~~~~~ 109 (116)
.+..|.+.|.+..++.....--..+.+||-+++.+.+.+++.|
T Consensus 94 ~~~~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~~~p~~~s 136 (137)
T 1ukx_A 94 SVNLLKSHLEELAKKQCGEVMIFELAHHVQSFLSEHNKSGPSS 136 (137)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHCCCCCCC
T ss_pred HHHHHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhcCCCCCCC
Confidence 3445566666655554322335788899999999998776655
No 10
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=56.36 E-value=6.1 Score=25.88 Aligned_cols=45 Identities=9% Similarity=0.195 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhcCCCeEeeeccChhHHHHHHHHHHHHHhCCcc
Q 039296 23 ELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWT 67 (116)
Q Consensus 23 qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~~~l~~k~~t 67 (116)
.++..+..+...+.|++...+-+++...-.-+.++.+.+++++.+
T Consensus 65 ~~~~fl~~l~~~l~~k~~~~f~t~g~~~~~a~~~l~~~l~~~G~~ 109 (138)
T 5nul_A 65 EFEPFIEEISTKISGKKVALFGSYGWGDGKWMRDFEERMNGYGCV 109 (138)
T ss_dssp THHHHHHHHGGGCTTCEEEEEEEESSSCSHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHhhcCCCEEEEEEecCCCCChHHHHHHHHHHHCCCE
Confidence 588888887655788886666666643112244555566666654
No 11
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=55.93 E-value=8.9 Score=24.68 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=34.4
Q ss_pred CceeccccCCccCCCCHH--HHHHHHHHHHHhcCCCeEeeeccChhHHHHHHHHHHHHHhCCcc
Q 039296 6 PGIATGNWGCGAFGGDPE--LKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWT 67 (116)
Q Consensus 6 ~~I~TGnWGCGaFgGD~q--LK~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~~~l~~k~~t 67 (116)
+.|.|--|+-|. .|+ +|..+.++...+.|++...+-+++...-.-+.++-+.++..+.+
T Consensus 50 vi~g~p~y~~~~---~~~~~~~~fl~~l~~~l~~k~~~~~~t~g~~~~~~~~~l~~~l~~~g~~ 110 (137)
T 2fz5_A 50 ILLGCPAMGSEE---LEDSVVEPFFTDLAPKLKGKKVGLFGSYGWGSGEWMDAWKQRTEDTGAT 110 (137)
T ss_dssp EEEECCCBTTTB---CCHHHHHHHHHHHGGGCSSCEEEEEEEESSCCSHHHHHHHHHHHHTTCE
T ss_pred EEEEccccCCCC---CCHHHHHHHHHHhhhhcCCCEEEEEEecCCCCchHHHHHHHHHHHCCCE
Confidence 445555554332 256 99999999767789996656666642112233444444445544
No 12
>3ntt_A Capsid protein; gene therapy vector, cystic fibros sialic acid receptor, icosahedral virus; 3.45A {Adeno-associated virus - 5}
Probab=55.01 E-value=3.2 Score=36.75 Aligned_cols=21 Identities=43% Similarity=0.907 Sum_probs=17.1
Q ss_pred CCCCCceeccccCCcc-CCCCH
Q 039296 2 GKDLPGIATGNWGCGA-FGGDP 22 (116)
Q Consensus 2 ~~~~~~I~TGnWGCGa-FgGD~ 22 (116)
|++.+.++||.|=||+ |.+|.
T Consensus 207 G~~GVG~stG~W~~gt~f~~n~ 228 (724)
T 3ntt_A 207 GADGVGNASGDWHCDSTWMGDR 228 (724)
T ss_dssp --CCSSSCSCCCCCEEEEETTE
T ss_pred CCCCcccccccccCCCEECCCE
Confidence 4678899999999999 88876
No 13
>3rxy_A NIF3 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, NIF3 superfamily, unknown function; 2.00A {Sphaerobacter thermophilus}
Probab=52.93 E-value=11 Score=29.64 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=37.4
Q ss_pred HHHhcCCCeEeeeccChhHHH-HHHHHHHH-HH-hCC-ccHHHHHHHHHHHHHh
Q 039296 32 AASQASRPFVLYYTFGIDALQ-NLDQITQW-IL-SHE-WTVRDLWNMMVEYSSQ 81 (116)
Q Consensus 32 AAS~Agr~~l~Y~tf~d~~l~-~l~~v~~~-l~-~k~-~tVgdL~~~L~~y~~~ 81 (116)
||.+.+.|+++-||--|+..+ .|++.++. +. .+- -||+|+.++|.+..+.
T Consensus 124 ~Arll~~p~m~~H~paD~~~~~~l~~~~~~~~~~~~p~~t~~dvi~~L~~ipEy 177 (278)
T 3rxy_A 124 VARLLEMPFLNIHLPLDEVGRRIMVKTIQEAVEPLGDEARVQDAIDALMTLPEF 177 (278)
T ss_dssp HHHHHTCCEEECCHHHHHHHHHHHHHHHHHHHGGGGGGCBHHHHHHHHTTSHHH
T ss_pred HHHHhCCcceecCcchHHHHHHHHHHHHhhhhhccCccchHHHHHHHHHhCchh
Confidence 789999999999999997764 46666652 22 222 6999999999866443
No 14
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=51.39 E-value=54 Score=25.06 Aligned_cols=63 Identities=11% Similarity=0.092 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHHHh-cCCCeEe-eeccChhHHH--HHHHHHHHHHhCCccHHHHHHHHHHHHHh
Q 039296 19 GGDPELKAIIQWLAASQ-ASRPFVL-YYTFGIDALQ--NLDQITQWILSHEWTVRDLWNMMVEYSSQ 81 (116)
Q Consensus 19 gGD~qLK~lIQwiAAS~-Agr~~l~-Y~tf~d~~l~--~l~~v~~~l~~k~~tVgdL~~~L~~y~~~ 81 (116)
.|||.+...++.+-+-. +|.+.|. =.+|+|.-.. -+++..+...++++|+.++++++.+..++
T Consensus 28 aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~ 94 (271)
T 3nav_A 28 IGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRAR 94 (271)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 58998888888877654 5788432 2378887664 57888888889999999999999988654
No 15
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=50.86 E-value=8 Score=25.29 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=26.7
Q ss_pred ceeccccCCccCCCCHHHHHHHHHHH---HHhcCCCeEeeeccChhHHHHHHHHHHHHH
Q 039296 7 GIATGNWGCGAFGGDPELKAIIQWLA---ASQASRPFVLYYTFGIDALQNLDQITQWIL 62 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qLK~lIQwiA---AS~Agr~~l~Y~tf~d~~l~~l~~v~~~l~ 62 (116)
.+.|+.|+- | .-++.+-+.+. +...+-++.+-...++++ ++++++.+.+.
T Consensus 84 ~f~t~g~~~----~-~a~~~l~~~l~~~G~~~v~~~~~~~~~p~~~d-~~~~~~~~~l~ 136 (138)
T 5nul_A 84 LFGSYGWGD----G-KWMRDFEERMNGYGCVVVETPLIVQNEPDEAE-QDCIEFGKKIA 136 (138)
T ss_dssp EEEEESSSC----S-HHHHHHHHHHHHTTCEECSCCEEEESSCGGGH-HHHHHHHHHHH
T ss_pred EEEecCCCC----C-hHHHHHHHHHHHCCCEEECCceEEecCCCHHH-HHHHHHHHHHh
Confidence 466777751 1 23455555444 445554544334445566 77777766553
No 16
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=50.59 E-value=4.6 Score=31.99 Aligned_cols=28 Identities=29% Similarity=0.537 Sum_probs=22.0
Q ss_pred cee-ccccCCccCCCCH--------HH-HHHHHHHHHH
Q 039296 7 GIA-TGNWGCGAFGGDP--------EL-KAIIQWLAAS 34 (116)
Q Consensus 7 ~I~-TGnWGCGaFgGD~--------qL-K~lIQwiAAS 34 (116)
+++ |||||=..|||.| .+ |.+++-|-..
T Consensus 112 TvH~tGN~g~a~~GG~p~~la~a~P~~~~~lLr~l~~~ 149 (298)
T 2gfq_A 112 TTHVTGNWGKAMYGGKDESFAVAIPSAMKLSLLKMSEL 149 (298)
T ss_dssp EEECCEESSCCSSSSCTTEECBBCHHHHHHHHHHHHHH
T ss_pred EEeCCCCCCccccCCCCCccccCCHHHHHHHHHHHHHh
Confidence 455 9999988899965 44 8888888765
No 17
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=50.48 E-value=54 Score=24.96 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=48.2
Q ss_pred CCCHHHHHHHHHHHHHh-cCCCeEee-eccChhHH--HHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Q 039296 19 GGDPELKAIIQWLAASQ-ASRPFVLY-YTFGIDAL--QNLDQITQWILSHEWTVRDLWNMMVEYSSQ 81 (116)
Q Consensus 19 gGD~qLK~lIQwiAAS~-Agr~~l~Y-~tf~d~~l--~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~ 81 (116)
.|||.+...++.+-+-. +|.+.|.. .+|+|.-. .-+++..+...++++|+.++++++.+..+.
T Consensus 26 aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~ 92 (267)
T 3vnd_A 26 IGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQ 92 (267)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 58998888887776654 78885432 37888766 357888888889999999999999888654
No 18
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=48.03 E-value=20 Score=26.21 Aligned_cols=22 Identities=14% Similarity=0.299 Sum_probs=19.4
Q ss_pred HHHHHHhCCccHHHHHHHHHHH
Q 039296 57 ITQWILSHEWTVRDLWNMMVEY 78 (116)
Q Consensus 57 v~~~l~~k~~tVgdL~~~L~~y 78 (116)
+++.++++|+|+.|+.++....
T Consensus 16 ~~~~L~~rGVtl~dia~~~~~L 37 (168)
T 1rfz_A 16 ARRWLEERGVTVEKIAELVYYL 37 (168)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHh
Confidence 6789999999999999998765
No 19
>2x47_A Macro domain-containing protein 1; signaling protein, signal transduction, estrogen signaling; 1.70A {Homo sapiens}
Probab=45.53 E-value=86 Score=23.36 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=33.7
Q ss_pred ceeccccCCccCCCCHHH------HHHHHHHHHHhcCCCeEeeeccChhHHHHHHHHH
Q 039296 7 GIATGNWGCGAFGGDPEL------KAIIQWLAASQASRPFVLYYTFGIDALQNLDQIT 58 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qL------K~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~ 58 (116)
.||----|||.||-.++. +++..|+...-...+.+.++.|+++..+-+++++
T Consensus 171 SIAfP~IstG~~g~p~~~aa~i~~~~v~~fl~~~~~~l~~V~fv~f~~~~~~~y~~~l 228 (235)
T 2x47_A 171 SVAFPCISTGVFGYPCEAAAEIVLATLREWLEQHKDKVDRLIICVFLEKDEDIYRSRL 228 (235)
T ss_dssp EEEECCTTCSTTSCCHHHHHHHHHHHHHHHHHHHGGGCSEEEEEECSHHHHHHHHHHH
T ss_pred eEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 467777899999999875 3344444433223455778889987776555544
No 20
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=45.00 E-value=10 Score=25.99 Aligned_cols=33 Identities=12% Similarity=0.226 Sum_probs=14.6
Q ss_pred CccCCCCHHHHHHHHHH-HHHhcCCCeEeeeccC
Q 039296 15 CGAFGGDPELKAIIQWL-AASQASRPFVLYYTFG 47 (116)
Q Consensus 15 CGaFgGD~qLK~lIQwi-AAS~Agr~~l~Y~tf~ 47 (116)
|-.++|+++-+..+.-+ ...+.|++...|-+++
T Consensus 59 spty~g~~p~~~fl~~l~~~~l~gk~v~~fgs~g 92 (161)
T 3hly_A 59 TPPSQPSEAVATALSTIFAAAHNKQAIGLFDSYG 92 (161)
T ss_dssp CCBSSCCHHHHHHHHHHHHHCCTTSEEEEECCCC
T ss_pred cCCcCCchhHHHHHHHHHhhhhCCCEEEEEEcCC
Confidence 33334443323333333 3345666655454554
No 21
>1tlq_A Hypothetical protein YPJQ; structural genomics, NYSGXRC, T1519 protein structure initiative, NEW YORK SGX research center structural genomics; 2.40A {Bacillus subtilis} SCOP: a.195.1.1
Probab=42.46 E-value=25 Score=26.25 Aligned_cols=43 Identities=5% Similarity=-0.058 Sum_probs=27.5
Q ss_pred HHHHHHhCCccHHHHHHHHHHHHHhhhcCCCcchhHHhhhhhh
Q 039296 57 ITQWILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSL 99 (116)
Q Consensus 57 v~~~l~~k~~tVgdL~~~L~~y~~~~~~~~~~~~lf~wLl~~l 99 (116)
+++.|+++++|+.|+.++............+.....+-+...|
T Consensus 15 ~i~~L~eRGVtl~dIaeiv~~Lq~~Y~p~lt~e~c~e~v~~VL 57 (189)
T 1tlq_A 15 TKDMLNKRGVMIEDIARIVQKLQEKYNPNLPLSVCMENVEKVL 57 (189)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHTTTTCTTCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhcccCCCccHHHHHHHHHHHH
Confidence 6789999999999999999765333333334344444333333
No 22
>2jyc_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, BC011709, protein structure initiative, PSI-2; NMR {Homo sapiens} PDB: 2lgr_A
Probab=40.48 E-value=33 Score=24.08 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=13.2
Q ss_pred ceeccccCCccCCCCHHH
Q 039296 7 GIATGNWGCGAFGGDPEL 24 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qL 24 (116)
.|+-=.-|||.||.+++.
T Consensus 122 sIa~P~IgtGi~G~p~~~ 139 (160)
T 2jyc_A 122 DLSMPRIGCGLDRLQWEN 139 (160)
T ss_dssp EEEEESCCSSCSSSCHHH
T ss_pred EEEeCCCCCCCCCCCHHH
Confidence 455556799999999763
No 23
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=39.41 E-value=14 Score=28.55 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHH-h-cCCCeE
Q 039296 22 PELKAIIQWLAAS-Q-ASRPFV 41 (116)
Q Consensus 22 ~qLK~lIQwiAAS-~-Agr~~l 41 (116)
+++|..|.++... . .|++..
T Consensus 324 ~~~k~fld~l~~~~~~~~K~~~ 345 (414)
T 2q9u_A 324 PSVAAALNYVRGLTLIKGKPAF 345 (414)
T ss_dssp HHHHHHHHHHHHHTTTTTSBEE
T ss_pred HHHHHHHHHHHhhcccCCCEEE
Confidence 3455555555432 2 355533
No 24
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=39.03 E-value=33 Score=25.26 Aligned_cols=23 Identities=9% Similarity=0.403 Sum_probs=19.6
Q ss_pred HHHHHHHhCCccHHHHHHHHHHH
Q 039296 56 QITQWILSHEWTVRDLWNMMVEY 78 (116)
Q Consensus 56 ~v~~~l~~k~~tVgdL~~~L~~y 78 (116)
.+++.++++++|+.|+.++.+..
T Consensus 13 ~~~~~L~~rGVtl~diae~v~~L 35 (178)
T 1y9i_A 13 KARSWLIERGVEIDDIAELVLFL 35 (178)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHh
Confidence 36789999999999999998754
No 25
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=38.78 E-value=29 Score=23.65 Aligned_cols=52 Identities=12% Similarity=-0.119 Sum_probs=28.1
Q ss_pred ceeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHHHHHHHHHHHH
Q 039296 7 GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWI 61 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~~~l 61 (116)
.+.|+-|+|++ -.+|+.+++-.-+...+-++.+-...++++++++.++.+.+
T Consensus 87 ~fgs~g~~g~a---~~~l~~~l~~~G~~~v~~~~~~~~~P~~~dl~~~~~~g~~l 138 (161)
T 3hly_A 87 LFDSYGGDDEP---IDALLAQFRNLGLHTAFPPIRVKDQPTEAIYQQCEESGTDL 138 (161)
T ss_dssp EECCCCSSBCC---HHHHHHHHHHTTCEESSSCBCCCSSCCHHHHHHHHHHHHHH
T ss_pred EEEcCCCCcHH---HHHHHHHHHHCCCEEecCceEEeeCCCHHHHHHHHHHHHHH
Confidence 46677777543 24566666555555544443333344556666666655443
No 26
>4ggj_A Mitochondrial cardiolipin hydrolase; piRNA pathway, protein-RNA interactions, piRNA RNAI, HKD MOT zinc finger, nuclease, nucleic acid binding; 1.75A {Mus musculus} PDB: 4ggk_A
Probab=38.47 E-value=20 Score=25.56 Aligned_cols=54 Identities=19% Similarity=0.263 Sum_probs=37.0
Q ss_pred CccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHHHHHHHHHHHHHhCCccHHHHH
Q 039296 15 CGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLW 72 (116)
Q Consensus 15 CGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~~~l~~k~~tVgdL~ 72 (116)
|.--.|+..+..+|+.|..+.-.+. |.+|.|.+.++. +. +....++|+.|.=|+
T Consensus 39 ~~~~~~~~~~~~ll~~I~~A~~sI~-i~~y~~~~~~i~--~a-L~~aa~rGV~Vrii~ 92 (196)
T 4ggj_A 39 CSLPHSESSLSRLLRALLAARSSLE-LCLFAFSSPQLG--RA-VQLLHQRGVRVRVIT 92 (196)
T ss_dssp CSSCCSCCHHHHHHHHHHTCSSEEE-EEESCBCCHHHH--HH-HHHHHHTTCEEEEEE
T ss_pred eecCCcHHHHHHHHHHHHHhheEEE-EEEEEeCCHHHH--HH-HHHHHHcCCcEEEEE
Confidence 4556788889999999987776667 568889886652 22 223346888775443
No 27
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=38.34 E-value=1.1e+02 Score=22.20 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=32.9
Q ss_pred ceeccccCCccCCCCHHHHHHH--HHHHHHhc-CCCeEeeeccChhHHHHHHHHHHH
Q 039296 7 GIATGNWGCGAFGGDPELKAII--QWLAASQA-SRPFVLYYTFGIDALQNLDQITQW 60 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qLK~lI--QwiAAS~A-gr~~l~Y~tf~d~~l~~l~~v~~~ 60 (116)
.||----|||.||.+++.-+-+ +-+..-+- ....+.++.|+++.++-+++..+.
T Consensus 143 SIAfP~IstG~~G~p~~~aa~i~~~~v~~~l~~~l~~V~~v~~~~~~~~~~~~~l~~ 199 (211)
T 1vhu_A 143 SIAFPAVSAGIYGCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVFER 199 (211)
T ss_dssp EEEECCTTSSTTCCCHHHHHHHHHHHHHHCCCSSCCEEEEEESSHHHHHHHHHHHHH
T ss_pred EEEeccccCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 4677778999999998754432 22222110 033466888988777666665543
No 28
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=37.28 E-value=52 Score=19.91 Aligned_cols=33 Identities=6% Similarity=0.213 Sum_probs=23.8
Q ss_pred ccChhHHHHHHHHHHHHHhCCccHHHHHHHHHH
Q 039296 45 TFGIDALQNLDQITQWILSHEWTVRDLWNMMVE 77 (116)
Q Consensus 45 tf~d~~l~~l~~v~~~l~~k~~tVgdL~~~L~~ 77 (116)
.|+++++..|..+....++.++++.++-.+|..
T Consensus 44 ~Y~~~dl~~l~~I~~l~~~~G~sl~ei~~~l~~ 76 (81)
T 2jml_A 44 VYSREEVEAVRRVARLIQEEGLSVSEAIAQVKT 76 (81)
T ss_dssp EECHHHHHHHHHHHHHHHHTSTHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHc
Confidence 366667777766544433899999999988854
No 29
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=37.18 E-value=49 Score=25.19 Aligned_cols=61 Identities=8% Similarity=0.146 Sum_probs=48.5
Q ss_pred CCCHHHHHHHHHHHHHh-cCCCeEe-eeccChhHHH--HHHHHHHHHHhCCccHHHHHHHHHHHH
Q 039296 19 GGDPELKAIIQWLAASQ-ASRPFVL-YYTFGIDALQ--NLDQITQWILSHEWTVRDLWNMMVEYS 79 (116)
Q Consensus 19 gGD~qLK~lIQwiAAS~-Agr~~l~-Y~tf~d~~l~--~l~~v~~~l~~k~~tVgdL~~~L~~y~ 79 (116)
.|||.+...++.|-+-. +|.++|. =.+|+|.-.. -+++-.+...++++|+.++++++.+..
T Consensus 22 aG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r 86 (252)
T 3tha_A 22 LGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIK 86 (252)
T ss_dssp TTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHh
Confidence 59999999999888764 6788432 2488887664 578888888899999999999998764
No 30
>1got_G GT-gamma; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: a.137.3.1 PDB: 1tbg_E 2trc_G 1b9y_B 1b9x_B 1a0r_G*
Probab=36.98 E-value=72 Score=19.96 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHH----hCCccHHHHHHHHHHHHHhhh
Q 039296 51 LQNLDQITQWIL----SHEWTVRDLWNMMVEYSSQRL 83 (116)
Q Consensus 51 l~~l~~v~~~l~----~k~~tVgdL~~~L~~y~~~~~ 83 (116)
+.++++.++.|+ .+.+.|.+-...|.+||.+..
T Consensus 19 ~~~lr~~veqLr~el~~~RikVS~aa~~L~~Yce~~~ 55 (73)
T 1got_G 19 KDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERS 55 (73)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHhcC
Confidence 445555555554 578999999999999998864
No 31
>4dpv_Z Protein (parvovirus coat protein); complex (virus/DNA), FULL capsid, single-stranded DNA, icosahedral virus; HET: DNA; 2.90A {Canine parvovirus} SCOP: b.121.5.2 PDB: 1c8h_A* 1c8d_A 1ijs_P* 1fpv_A 2cas_A 1p5w_A* 1p5y_A 1c8e_A 1c8f_A 1c8g_A
Probab=36.83 E-value=7.6 Score=33.36 Aligned_cols=20 Identities=30% Similarity=0.518 Sum_probs=16.7
Q ss_pred CCCCCceeccccCCcc-CC--CC
Q 039296 2 GKDLPGIATGNWGCGA-FG--GD 21 (116)
Q Consensus 2 ~~~~~~I~TGnWGCGa-Fg--GD 21 (116)
|+..+.++||.|=||+ |. ||
T Consensus 34 G~gGVG~STG~W~~gT~f~~l~d 56 (584)
T 4dpv_Z 34 GSGGVGISTGTFNNQTEFKFLEN 56 (584)
T ss_dssp TTEETTBCCCCCCCCEEEEECTT
T ss_pred CCCCcccccccccCCceEEecCC
Confidence 4567999999999999 54 77
No 32
>2eee_A Uncharacterized protein C6ORF130; macro domain, A1PP domain, ADP-ribose binding, rossmann fold, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l8r_A*
Probab=36.33 E-value=39 Score=23.19 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=13.0
Q ss_pred ceeccccCCccCCCCHHH
Q 039296 7 GIATGNWGCGAFGGDPEL 24 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qL 24 (116)
.|+-=.-|||.||.+++.
T Consensus 111 sIa~P~IgtG~~G~~~~~ 128 (149)
T 2eee_A 111 DLSMPRIGCGLDRLQWEN 128 (149)
T ss_dssp EEECCCCCCTTTTCCHHH
T ss_pred EEEeCCCCCCCCCCCHHH
Confidence 455556789999999763
No 33
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=34.95 E-value=1.2e+02 Score=21.46 Aligned_cols=51 Identities=10% Similarity=0.204 Sum_probs=31.7
Q ss_pred ceeccccCCccCCCCHHHHH------HHHHHHHHhcCCCeEeeeccChhHHHHHHHHH
Q 039296 7 GIATGNWGCGAFGGDPELKA------IIQWLAASQASRPFVLYYTFGIDALQNLDQIT 58 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qLK~------lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~ 58 (116)
.||----|||.||.+++.-+ +.+|+...- ....+.++.|+++.++-+++.+
T Consensus 115 SIAfP~IstG~~g~p~~~aa~i~~~~v~~~l~~~~-~~~~V~~v~~~~~~~~~~~~~l 171 (184)
T 1spv_A 115 SVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHA-LPEQVYFVCYDEENAHLYERLL 171 (184)
T ss_dssp EEEECCTTSSTTCCCHHHHHHHHHHHHHHHHHHCC-SSSEEEEEESSHHHHHHHHHHH
T ss_pred eEEeccccCCCCCCCHHHHHHHHHHHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHH
Confidence 57777789999999987543 333333211 2234667788877666555443
No 34
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Probab=34.82 E-value=1e+02 Score=22.20 Aligned_cols=51 Identities=12% Similarity=0.127 Sum_probs=35.8
Q ss_pred eccChhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhhhcCCCcchhHHhhhh
Q 039296 44 YTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLP 97 (116)
Q Consensus 44 ~tf~d~~l~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~~~~~~~~~~lf~wLl~ 97 (116)
..|.+++.+++.+.+..+-.++++..+..+.|.+-..+ ...-..|.+|+.+
T Consensus 205 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 255 (262)
T 2qia_A 205 RGFSREAITAIRNAYKLIYRSGKTLDEVKPEIAELAET---YPEVKAFTDFFAR 255 (262)
T ss_dssp TTCCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTT---CGGGHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHh
Confidence 46777777888888888888889888877666543221 1224578888886
No 35
>2fg1_A Conserved hypothetical protein BT1257; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.25A {Bacteroides thetaiotaomicron} SCOP: c.50.1.2 PDB: 2afc_A
Probab=34.50 E-value=46 Score=22.95 Aligned_cols=18 Identities=39% Similarity=0.676 Sum_probs=14.1
Q ss_pred ceeccccCCccCCCCHHH
Q 039296 7 GIATGNWGCGAFGGDPEL 24 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qL 24 (116)
.|+-=.-|||.||.+++.
T Consensus 120 sIa~P~Ig~G~~G~~w~~ 137 (158)
T 2fg1_A 120 SVHMPRIGCGLAGGKWEL 137 (158)
T ss_dssp EEEECCTTCSTTCCCHHH
T ss_pred eEEecCcCCCCCCCCHHH
Confidence 566667899999999764
No 36
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=34.49 E-value=1.1e+02 Score=20.91 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=30.9
Q ss_pred ceeccccCCccCCCCHHHHHHHHHHHHHhcC---CCeEeeeccChhHHHHHHH
Q 039296 7 GIATGNWGCGAFGGDPELKAIIQWLAASQAS---RPFVLYYTFGIDALQNLDQ 56 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Ag---r~~l~Y~tf~d~~l~~l~~ 56 (116)
.|+----|||.||.+++.-+-+ |...... ...+.++.|+++.++-+++
T Consensus 107 sIa~P~igtG~~g~p~~~~a~i--~~~~~~~~~~~~~V~~v~~~~~~~~~~~~ 157 (159)
T 2dx6_A 107 TVAFPLLGTGVGGLPVEAVARV--MLEEIKKAPDTLEVTLYGYREEDAEAIRR 157 (159)
T ss_dssp EEEECCTTSSTTCCCHHHHHHH--HHHHHTTSCTTCEEEEEESSHHHHHHHHH
T ss_pred EEEECCccCCCCCCCHHHHHHH--HHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 5677778999999998764433 3323322 2346688898876665544
No 37
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=32.55 E-value=41 Score=25.62 Aligned_cols=59 Identities=10% Similarity=0.284 Sum_probs=35.0
Q ss_pred CCceeccccCCccCCCCHHHHHHHHHHHH-HhcCCCeEeeeccChhHHHHHHHHHHHHHhCCcc
Q 039296 5 LPGIATGNWGCGAFGGDPELKAIIQWLAA-SQASRPFVLYYTFGIDALQNLDQITQWILSHEWT 67 (116)
Q Consensus 5 ~~~I~TGnWGCGaFgGD~qLK~lIQwiAA-S~Agr~~l~Y~tf~d~~l~~l~~v~~~l~~k~~t 67 (116)
.+.|.|..||-|.. +++|..+.++.. .+.|++...+.+++... .-+.++.+.+...+.+
T Consensus 306 ~ii~gsp~~~~~~~---~~~~~~l~~l~~~~l~~k~~~~f~t~g~~~-~a~~~l~~~l~~~G~~ 365 (402)
T 1e5d_A 306 AVIVGSPTHNNGIL---PYVAGTLQYIKGLRPQNKIGGAFGSFGWSG-ESTKVLAEWLTGMGFD 365 (402)
T ss_dssp EEEEECCCBTTBCC---HHHHHHHHHHHHTCCCSCEEEEEEEESSSC-HHHHHHHHHHHHTTCB
T ss_pred EEEEECCccCCCch---HHHHHHHHHhhhcccCCCEEEEEEcCCCcc-HHHHHHHHHHHHCCCE
Confidence 34567777776663 579999999876 45788866566655311 1133444445444443
No 38
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=30.95 E-value=74 Score=20.51 Aligned_cols=25 Identities=20% Similarity=0.342 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhCCccHHHHHHHHH
Q 039296 52 QNLDQITQWILSHEWTVRDLWNMMV 76 (116)
Q Consensus 52 ~~l~~v~~~l~~k~~tVgdL~~~L~ 76 (116)
+++.++.+.+.+.|+++.||...+.
T Consensus 59 ~Kl~~~~e~l~~~GI~~eeL~~~~~ 83 (86)
T 3nr7_A 59 RKLQQYREMLIADGIDPNELLNSMA 83 (86)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHhhhc
Confidence 3688888999999999999987653
No 39
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=30.95 E-value=17 Score=23.02 Aligned_cols=54 Identities=11% Similarity=0.160 Sum_probs=34.5
Q ss_pred eeccChhHHHHHHHHHHHHHhCCccHHHHHHHH--HHHHHhhhcCCCcchhHHhhhh
Q 039296 43 YYTFGIDALQNLDQITQWILSHEWTVRDLWNMM--VEYSSQRLNGRTNLGFFAWLLP 97 (116)
Q Consensus 43 Y~tf~d~~l~~l~~v~~~l~~k~~tVgdL~~~L--~~y~~~~~~~~~~~~lf~wLl~ 97 (116)
-||-+.---.+.++..+.+++...+-+++++.| .+||-++- =.++.+|+|.|++
T Consensus 7 CFTCGkvi~~~we~y~~~~~~g~l~~~~~LD~Lg~~RyCCRrM-llthvdlie~ll~ 62 (70)
T 1twf_J 7 CFSCGKVVGDKWESYLNLLQEDELDEGTALSRLGLKRYCCRRM-ILTHVDLIEKFLR 62 (70)
T ss_dssp CTTTCCBCTTCHHHHHHHHHTSCCCHHHHHHHTTCCSHHHHHH-HHTBCCTHHHHHT
T ss_pred cCCCCCChHHHHHHHHHHHHcCCCCHHHHHHHcCCcccchhhH-HHHHHHHHHHHhc
Confidence 456664333344555556654444999999966 68986641 1267999999984
No 40
>2ld7_B Paired amphipathic helix protein SIN3A; transcription; NMR {Mus musculus}
Probab=30.62 E-value=99 Score=19.19 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhhhcCCCcchhHHhhhhhh
Q 039296 52 QNLDQITQWILSHEWTVRDLWNMMVEYSSQRLNGRTNLGFFAWLLPSL 99 (116)
Q Consensus 52 ~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~~~~~~~~~~lf~wLl~~l 99 (116)
.++-+++....+..++..+|.+.+..+-.. +..|++|...=+
T Consensus 29 ~eFLk~lnlf~q~~Id~~eLv~~V~~~lg~------~pdL~~~Fk~Fl 70 (75)
T 2ld7_B 29 ENFLRCLVIFNQEVISRAELVQLVSPFLGK------FPELFNWFKNFL 70 (75)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHTHHHHTT------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcCcCHHHHHHHHHHHHcc------CHHHHHHHHHHc
Confidence 456666677778888888888887776432 467888876543
No 41
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=29.76 E-value=1.8e+02 Score=21.88 Aligned_cols=64 Identities=9% Similarity=0.083 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEe-eeccChhHH--HHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Q 039296 18 FGGDPELKAIIQWLAASQASRPFVL-YYTFGIDAL--QNLDQITQWILSHEWTVRDLWNMMVEYSSQ 81 (116)
Q Consensus 18 FgGD~qLK~lIQwiAAS~Agr~~l~-Y~tf~d~~l--~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~ 81 (116)
..|||.+...+..+-+-..+.+.|. =.+|+|.-+ .-+++......++++|+.++++.+.+..+.
T Consensus 23 ~~GdP~~~~~~~~~~~l~~~aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~ 89 (271)
T 1ujp_A 23 TAGFPSREGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRAL 89 (271)
T ss_dssp ETTSSCHHHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCChHHHHHHHHHHHhcCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 4688888877776654433355322 246777655 357777777888999999999998887544
No 42
>1wh4_A IRAK4, interleukin-1 receptor-associated kinase 4; death domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.77.1.2
Probab=29.67 E-value=73 Score=21.77 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=16.5
Q ss_pred HHHHHHhCCccHHHHHHHHHHH
Q 039296 57 ITQWILSHEWTVRDLWNMMVEY 78 (116)
Q Consensus 57 v~~~l~~k~~tVgdL~~~L~~y 78 (116)
+.+.-..++-||++|+++|.+-
T Consensus 77 LL~~Wg~~~~TV~~Ll~lL~~~ 98 (127)
T 1wh4_A 77 LLFDWGTTNCTVGDLVDLLVQI 98 (127)
T ss_dssp HHHHHHHHCCBHHHHHHHHHHT
T ss_pred HHHHHhccCCcHHHHHHHHHHc
Confidence 3444445788999999999765
No 43
>4gel_A Mitochondrial cardiolipin hydrolase; piRNA, phospholipase D, nuclease; 1.76A {Drosophila melanogaster} PDB: 4gem_A 4gen_A
Probab=29.37 E-value=17 Score=25.81 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=34.5
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHHHHHHHHHHHHHhCCccHHHHH
Q 039296 18 FGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLW 72 (116)
Q Consensus 18 FgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~~~l~~k~~tVgdL~ 72 (116)
...+..++.||+.|..+.-.+. |.+|.|.+.++- +.+++ ..++|+.|.=|+
T Consensus 54 ~~~~~~~~~ii~~I~~A~~sI~-i~~Y~~~~~~I~--~aL~~-Aa~RGV~VRii~ 104 (220)
T 4gel_A 54 HCSLRNVAKIVEQIDRAVYSID-LAIYTFTSLFLA--DSIKR-ALQRGVIIRIIS 104 (220)
T ss_dssp TCHHHHHHHHHHHHHTCSSEEE-EECSCBCCHHHH--HHHHH-HHHHTCEEEEEC
T ss_pred cCcHHHHHHHHHHHHHhhhEEE-EEEEEeCCHHHH--HHHHH-HHHcCCeEEEEE
Confidence 4456678999999988776667 578899887652 22233 346777776544
No 44
>1z14_A VP2; prototype strain, X-RAY crystallography, icosahedral virus; 3.25A {Minute virus of mice} PDB: 1mvm_A* 1z1c_A* 2xgk_A
Probab=28.90 E-value=17 Score=31.16 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=13.2
Q ss_pred CceeccccCCcc-C--CCC
Q 039296 6 PGIATGNWGCGA-F--GGD 21 (116)
Q Consensus 6 ~~I~TGnWGCGa-F--gGD 21 (116)
+.++||+|=||+ | -||
T Consensus 2 VG~STG~W~~gT~f~~l~d 20 (549)
T 1z14_A 2 VGVSTGSYDNQTHYRFLGD 20 (549)
T ss_dssp TTSCCCCCCCCEEEEECST
T ss_pred cccccCcccCcceEeecCC
Confidence 689999999999 4 455
No 45
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A*
Probab=28.66 E-value=91 Score=24.82 Aligned_cols=50 Identities=6% Similarity=0.068 Sum_probs=35.3
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCeEeeeccCh-----------------------------hHHHHHHHHHHHHHhCCcc
Q 039296 17 AFGGDPELKAIIQWLAASQASRPFVLYYTFGI-----------------------------DALQNLDQITQWILSHEWT 67 (116)
Q Consensus 17 aFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d-----------------------------~~l~~l~~v~~~l~~k~~t 67 (116)
.|..+..+...++.|++. |.+.|..+-|.+ +.++.|.++++.++++++.
T Consensus 38 ~~~~~~~i~~~l~~~a~~--G~N~VRv~~f~d~~~~~~~~~~~lqp~~G~yd~~~~~~~~~~~~~~LD~~i~~A~k~GI~ 115 (383)
T 3pzg_A 38 HYKSNRMIDSVLESARDM--GIKVLRIWGFLDGESYCRDKNTYMHPEPGVFGVPEGISNAQNGFERLDYTIAKAKELGIK 115 (383)
T ss_dssp TTSCHHHHHHHHHHHHHH--TCCEEEEECCCBSHHHHHHHTEESBSBTTBCSSCTTCSSCEEHHHHHHHHHHHHHHHTCE
T ss_pred ccCCHHHHHHHHHHHHHc--CCCEEEEeccccccccccccccccccCCCcccccccccchHHHHHHHHHHHHHHHHCCCE
Confidence 355556678899999875 777666655542 2267889999999888764
Q ss_pred H
Q 039296 68 V 68 (116)
Q Consensus 68 V 68 (116)
|
T Consensus 116 v 116 (383)
T 3pzg_A 116 L 116 (383)
T ss_dssp E
T ss_pred E
Confidence 3
No 46
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=28.05 E-value=33 Score=26.12 Aligned_cols=41 Identities=5% Similarity=0.074 Sum_probs=25.7
Q ss_pred CCCceeccccCCccCCCCHHHHHHHHHHHH-HhcCCCeEeeeccC
Q 039296 4 DLPGIATGNWGCGAFGGDPELKAIIQWLAA-SQASRPFVLYYTFG 47 (116)
Q Consensus 4 ~~~~I~TGnWGCGaFgGD~qLK~lIQwiAA-S~Agr~~l~Y~tf~ 47 (116)
+.+.|.|..|+-|... .+|..|.++.. .+.|++...+-+++
T Consensus 304 d~ii~g~p~y~~~~~~---~~~~~l~~l~~~~~~~k~~~~~~s~g 345 (398)
T 1ycg_A 304 RAVLVGSPTINNDILP---VVSPLLDDLVGLRPKNKVGLAFGAYG 345 (398)
T ss_dssp SEEEEECCCBTTBCCG---GGHHHHHHHHHHCCSSCEEEEEEEES
T ss_pred CEEEEECCccCccchH---HHHHHHHHHhccccCCCEEEEEEeCC
Confidence 3445666667666654 58888888775 45677754444544
No 47
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=27.78 E-value=88 Score=19.35 Aligned_cols=17 Identities=6% Similarity=0.249 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHHhcC
Q 039296 21 DPELKAIIQWLAASQAS 37 (116)
Q Consensus 21 D~qLK~lIQwiAAS~Ag 37 (116)
|+.+..++++|......
T Consensus 1 ~~~i~~~~~~i~~~~~~ 17 (108)
T 3mn2_A 1 SNAVRQVEEYIEANWMR 17 (108)
T ss_dssp CHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHcccC
Confidence 35566777777766543
No 48
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=27.09 E-value=16 Score=22.90 Aligned_cols=54 Identities=7% Similarity=0.124 Sum_probs=36.3
Q ss_pred eeeccChhHHHHHHHHHHHHHhCCccHHHHHHHH--HHHHHhhhcCCCcchhHHhhhh
Q 039296 42 LYYTFGIDALQNLDQITQWILSHEWTVRDLWNMM--VEYSSQRLNGRTNLGFFAWLLP 97 (116)
Q Consensus 42 ~Y~tf~d~~l~~l~~v~~~l~~k~~tVgdL~~~L--~~y~~~~~~~~~~~~lf~wLl~ 97 (116)
.-||-+.--..+.++..+.+ +.+.+-|++++.| .+||-++. =.++.+|.|.|++
T Consensus 6 RCFTCGkvi~~k~~~y~~~~-~~~~~~g~~LD~Lgl~ryCCRRm-~LtHVdlid~ll~ 61 (66)
T 4ayb_N 6 RCFTCGSLIADKWQPFITRV-NAGENPGKVLDDLGVKRYCCRRM-LLSHIDIISEVIH 61 (66)
T ss_dssp BCTTTCCBCHHHHHHHHHHH-HTTCCHHHHHHHSSCCSSHHHHH-HHTCCCCTTTTST
T ss_pred ccCCCcHhHHHHHHHHHHHH-hcCCCHHHHHHHhCCceechhhh-HHHHHHHHHHHHc
Confidence 35566654445566655555 4677899999988 58876642 1357888888873
No 49
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=26.81 E-value=1.1e+02 Score=21.55 Aligned_cols=49 Identities=16% Similarity=0.190 Sum_probs=31.7
Q ss_pred ceeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHHHHHHHHH
Q 039296 7 GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQIT 58 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~ 58 (116)
.|+----|||.||.+++.-+- .|...+.... +.++-|+++..+.+++.+
T Consensus 122 SIAfP~IstG~~g~p~~~aa~--i~~~~v~~~~-V~~v~f~~~~~~~~~~~l 170 (174)
T 2vri_A 122 IPLMPLLSCGIFGVRIENSLK--ALFSCDINKP-LQVFVYSSNEEQAVLKFL 170 (174)
T ss_dssp CEEEECSSCGGGCCCHHHHHH--HHHTSCCCSC-EEEEECSHHHHHHHHHHH
T ss_pred cEEeCccccCCCCCCHHHHHH--HHHHHHhhCc-EEEEEcCHHHHHHHHHHH
Confidence 466677899999998875443 3333333445 567789887666555544
No 50
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=26.63 E-value=1.1e+02 Score=20.40 Aligned_cols=33 Identities=12% Similarity=0.179 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhCCccHHHHHHHH------HHHHHhh
Q 039296 50 ALQNLDQITQWILSHEWTVRDLWNMM------VEYSSQR 82 (116)
Q Consensus 50 ~l~~l~~v~~~l~~k~~tVgdL~~~L------~~y~~~~ 82 (116)
.+++|++||+.|.+..+++-+.+.+. .++|...
T Consensus 35 al~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C~~~ 73 (100)
T 1vp7_A 35 ALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDR 73 (100)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999988764 5677664
No 51
>2ebq_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.89 E-value=25 Score=20.42 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=12.7
Q ss_pred CCCCCceeccccCCccC
Q 039296 2 GKDLPGIATGNWGCGAF 18 (116)
Q Consensus 2 ~~~~~~I~TGnWGCGaF 18 (116)
|.++..-..|.|.|-++
T Consensus 1 ~~~~~~~~~g~W~C~~C 17 (47)
T 2ebq_A 1 GSSGSSGVIGTWDCDTC 17 (47)
T ss_dssp CCSSCCCCSSSEECSSS
T ss_pred CCCCcCCCCCceECCee
Confidence 45566677899999874
No 52
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=25.80 E-value=35 Score=23.47 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=35.8
Q ss_pred CCCceeccccCCccCCCC------HHHHHHHHHHHH-HhcCCCeEeeeccChh-----HH-HHHHHHHHHHHhCCcc
Q 039296 4 DLPGIATGNWGCGAFGGD------PELKAIIQWLAA-SQASRPFVLYYTFGID-----AL-QNLDQITQWILSHEWT 67 (116)
Q Consensus 4 ~~~~I~TGnWGCGaFgGD------~qLK~lIQwiAA-S~Agr~~l~Y~tf~d~-----~l-~~l~~v~~~l~~k~~t 67 (116)
+.+.|.+--||-|..-|- +.++..+..+.. .+.|++...|-+ ++. .. .-+.++.+.+++.+.+
T Consensus 48 d~iilg~pt~~~G~~pg~~~~~~~~~~~~fl~~l~~~~l~gk~~a~fg~-g~~~~y~~~~~~a~~~l~~~l~~~G~~ 123 (179)
T 1yob_A 48 QFLILGTPTLGEGELPGLSSDAENESWEEFLPKIEGLDFSGKTVALFGL-GDQVGYPENYLDALGELYSFFKDRGAK 123 (179)
T ss_dssp SEEEEEEECBTTTBCSSGGGTCSSCCHHHHHHHHTTCCCTTCEEEEEEE-CCTTTCTTTTTHHHHHHHHHHHTTTCE
T ss_pred CEEEEEeccCCCCcCCcccccccchHHHHHHHHhhhcccCCCEEEEEEE-CCCcchhHHHHHHHHHHHHHHHHCCCE
Confidence 345566777777766532 447777787754 567887554444 321 12 2345555666555554
No 53
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=25.76 E-value=28 Score=18.69 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=11.2
Q ss_pred chhHHhhhhhhccCCCCCC
Q 039296 89 LGFFAWLLPSLTSHNFISP 107 (116)
Q Consensus 89 ~~lf~wLl~~ls~~~~~~~ 107 (116)
..|.+||++.-+.+-+++|
T Consensus 12 kdFv~WL~ngk~~~~~p~~ 30 (31)
T 3c5t_B 12 RLFIEWLKNGGPSSGAPPP 30 (31)
T ss_dssp HHHHHHHHTTGGGC-----
T ss_pred HHHHHHHHhCCCCCCCCCC
Confidence 6788999977766666554
No 54
>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*
Probab=25.65 E-value=1.1e+02 Score=22.20 Aligned_cols=50 Identities=10% Similarity=0.033 Sum_probs=36.1
Q ss_pred ccChhHHHHHHHHHHHHHhCCccHHHHHHHHHH-HHHhhhcCCCcchhHHhhhh
Q 039296 45 TFGIDALQNLDQITQWILSHEWTVRDLWNMMVE-YSSQRLNGRTNLGFFAWLLP 97 (116)
Q Consensus 45 tf~d~~l~~l~~v~~~l~~k~~tVgdL~~~L~~-y~~~~~~~~~~~~lf~wLl~ 97 (116)
.|.+++.+.+++.++.+-.++.++.+-.+.|.+ ..++ ...-..+.+||.+
T Consensus 208 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~f~~~ 258 (265)
T 4e6u_A 208 GWSKNTIQGLREAYKLIFKSGLTSVQAIDQIKSEILPS---VPEAQLLIDSLEQ 258 (265)
T ss_dssp TCCHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTT---CGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhcCC---CHHHHHHHHHHhh
Confidence 467777888999999998888898888877755 2111 1234678899864
No 55
>3zed_D Capsid protein VP3; viral protein, virus morphogenesis; 2.20A {Infectious pancreatic necrosis virus}
Probab=25.46 E-value=1.9e+02 Score=22.05 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=37.8
Q ss_pred ccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Q 039296 16 GAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQITQWILSHEWTVRDLWNMMVEYSSQ 81 (116)
Q Consensus 16 GaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~ 81 (116)
-+|+=|++|..+++.+-|..-. + .|.++.++..|+..+++. .|.+.|.+|.++
T Consensus 3 ~~~~~~~el~~~~~a~ma~A~~---~-----kDp~~~KlL~v~~W~~kn-----Gl~D~mynfs~~ 55 (242)
T 3zed_D 3 TASGMDAELQGLLQATMARAKE---V-----KDAEVFKLLKLMSWTRKN-----DLTDHMYEWSKE 55 (242)
T ss_pred CccccCHHHHHHHHHHHHHHhh---c-----cCHHHHHHHHHHHHHhcc-----CHHHHHHHHHhh
Confidence 3688899999999877665421 2 366788888888888775 556666666544
No 56
>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A
Probab=25.31 E-value=85 Score=20.40 Aligned_cols=35 Identities=6% Similarity=-0.044 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHhhhcCCCcchhHHhhhhhhccCCC
Q 039296 70 DLWNMMVEYSSQRLNGRTNLGFFAWLLPSLTSHNF 104 (116)
Q Consensus 70 dL~~~L~~y~~~~~~~~~~~~lf~wLl~~ls~~~~ 104 (116)
.|.+.|.+..++.....--..|.+|+-+.|+++|.
T Consensus 93 ~L~~~L~~~~~e~~G~~mif~lv~~lqe~l~~~n~ 127 (128)
T 2day_A 93 TILQVLGHVAKAGLGTAMLYELIEKGKEILSGPSS 127 (128)
T ss_dssp HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHhCCCEEhHHHHHHHHHHHHhccC
Confidence 44455555544433222346778888888888774
No 57
>2ebr_A Nuclear pore complex protein NUP153; ZF-ranbp domain, nucleoporin NUP153, 153 kDa nucleoporin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.27 E-value=34 Score=19.78 Aligned_cols=16 Identities=25% Similarity=0.638 Sum_probs=12.8
Q ss_pred CCCCCceeccccCCcc
Q 039296 2 GKDLPGIATGNWGCGA 17 (116)
Q Consensus 2 ~~~~~~I~TGnWGCGa 17 (116)
|.+...-..|.|.|.+
T Consensus 1 ~~~~fk~~~gsW~C~~ 16 (47)
T 2ebr_A 1 GSSGSSGPEGSWDCEL 16 (47)
T ss_dssp CCSSCSSCCSSCCCSS
T ss_pred CcccccCCCCeeECCe
Confidence 5566677889999988
No 58
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=24.92 E-value=1e+02 Score=19.56 Aligned_cols=47 Identities=15% Similarity=0.164 Sum_probs=30.1
Q ss_pred HHHHHHHhCCccHHHHHHHHHHHHHhhhcC---CCcchhHHhhhhhhccC
Q 039296 56 QITQWILSHEWTVRDLWNMMVEYSSQRLNG---RTNLGFFAWLLPSLTSH 102 (116)
Q Consensus 56 ~v~~~l~~k~~tVgdL~~~L~~y~~~~~~~---~~~~~lf~wLl~~ls~~ 102 (116)
+.+..--++.+|+.++|+.+.+-.+--... ....+.=.-|.++||-+
T Consensus 16 ~Ai~~sp~~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLSln 65 (85)
T 3bpy_A 16 QAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLH 65 (85)
T ss_dssp HHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHC
T ss_pred HHHHhCCcCCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhccHh
Confidence 334444577899999999997643332111 23457777888888854
No 59
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=24.88 E-value=62 Score=20.11 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=15.4
Q ss_pred HHHHHHHHHhCC-ccHHHHHHHH
Q 039296 54 LDQITQWILSHE-WTVRDLWNMM 75 (116)
Q Consensus 54 l~~v~~~l~~k~-~tVgdL~~~L 75 (116)
|++|.+.|++++ ++|.||-+.+
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l 26 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTL 26 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcHHHHHHHH
Confidence 566677776544 7888887766
No 60
>1s58_A B19 parvovirus capsid; icosahedral capsid, beta-barrel, icosahedral virus; 3.50A {Human parvovirus B19} SCOP: b.121.5.2
Probab=24.75 E-value=17 Score=31.20 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=13.7
Q ss_pred CCCCceeccccCCcc-CCCC
Q 039296 3 KDLPGIATGNWGCGA-FGGD 21 (116)
Q Consensus 3 ~~~~~I~TGnWGCGa-FgGD 21 (116)
+-...++||.|=||+ |.+|
T Consensus 15 gGG~~~~tG~W~~gt~f~~n 34 (554)
T 1s58_A 15 GGSSNPVKSMWSEGATFSAN 34 (554)
T ss_dssp ----CCCCCCCCCEEEEETT
T ss_pred CCCCCcccccccCCCEECCC
Confidence 345578899999999 8888
No 61
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=24.65 E-value=2.1e+02 Score=21.05 Aligned_cols=63 Identities=8% Similarity=0.155 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHH-HHHhcCCCeEee-eccChhHH--HHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Q 039296 19 GGDPELKAIIQWL-AASQASRPFVLY-YTFGIDAL--QNLDQITQWILSHEWTVRDLWNMMVEYSSQ 81 (116)
Q Consensus 19 gGD~qLK~lIQwi-AAS~Agr~~l~Y-~tf~d~~l--~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~ 81 (116)
.|||.+...++.+ +...+|.+.|.- .+|.|... ..+++..+...+.++|+.++++++.+..+.
T Consensus 25 ~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~ 91 (262)
T 2ekc_A 25 VGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKE 91 (262)
T ss_dssp TTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 6788777666654 334467884322 36776433 356777777778999999888888777544
No 62
>2vkc_A NEDD4-binding protein 2; human BCL3 binding protein, alternative splicing, homologous recombination, mismatch repair, small MUTS related; NMR {Homo sapiens}
Probab=24.08 E-value=39 Score=22.99 Aligned_cols=30 Identities=37% Similarity=0.624 Sum_probs=22.5
Q ss_pred CCCCCceeccccCCccCCCCHHHH-HHHHHHH
Q 039296 2 GKDLPGIATGNWGCGAFGGDPELK-AIIQWLA 32 (116)
Q Consensus 2 ~~~~~~I~TGnWGCGaFgGD~qLK-~lIQwiA 32 (116)
|...+.|.||. |=..-+|.+.|| ++.+|+.
T Consensus 86 g~~~v~IIhGk-G~hS~~g~~~Lk~~V~~~L~ 116 (135)
T 2vkc_A 86 GKPYLSVITGR-GNHSQGGVARIKPAVIKYLI 116 (135)
T ss_dssp CCSEEEEECCS-CSSSCCSCCTHHHHHHHHHH
T ss_pred CCeEEEEEECC-CcCCCCCCchHHHHHHHHHh
Confidence 44456789988 766677778888 6778886
No 63
>2z5e_A Proteasome assembling chaperone 3; beta sandwich, homodimer; 2.00A {Homo sapiens}
Probab=23.48 E-value=1.5e+02 Score=20.05 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=28.1
Q ss_pred CHHHHHHHHHHHH----HhcCCCeEeeeccChhHHHHHHHHHHHHHhCC
Q 039296 21 DPELKAIIQWLAA----SQASRPFVLYYTFGIDALQNLDQITQWILSHE 65 (116)
Q Consensus 21 D~qLK~lIQwiAA----S~Agr~~l~Y~tf~d~~l~~l~~v~~~l~~k~ 65 (116)
+|-+....+=||. +-..||++.=-...|...+.|+.+++.+++.+
T Consensus 72 e~l~~~~Arql~~~i~~~~~~r~lvl~LgLkd~s~~~~~~i~~~i~~~~ 120 (122)
T 2z5e_A 72 EPLIHVFAKNLVAFVSQEAGNRAVLLAVAVKDKSMEGLKALREVIRVCQ 120 (122)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCEEEEEEECSSCCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhhccCCCCcEEEEecccccCHHHHHHHHHHHHHhc
Confidence 3444444444444 33678866555666766677888888887764
No 64
>1k3v_A Capsid protein VP2; icosahadral, beta sheet, icosahedral virus; 3.50A {Porcine parvovirus} SCOP: b.121.5.2
Probab=23.04 E-value=24 Score=30.45 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=14.7
Q ss_pred CCCCCceeccccCCcc-C--CCC
Q 039296 2 GKDLPGIATGNWGCGA-F--GGD 21 (116)
Q Consensus 2 ~~~~~~I~TGnWGCGa-F--gGD 21 (116)
|+..+.++||.|=||+ | -||
T Consensus 35 G~gGVg~stG~W~~gt~f~~~~d 57 (579)
T 1k3v_A 35 GAGGVGVSTGTFNNQTEFQYLGE 57 (579)
T ss_dssp ---CTTSCCSCCCCCEEEEEEGG
T ss_pred CCCCcccccccccCCceEeecCC
Confidence 4578999999999999 5 466
No 65
>1i8x_A Granulin-1; two beta-hairpin stack, cytokine; NMR {Synthetic} SCOP: g.3.16.1 PDB: 1qgm_A 1i8y_A
Probab=22.70 E-value=15 Score=19.62 Aligned_cols=11 Identities=36% Similarity=0.921 Sum_probs=7.6
Q ss_pred eeccccCCccC
Q 039296 8 IATGNWGCGAF 18 (116)
Q Consensus 8 I~TGnWGCGaF 18 (116)
...|-|||=.|
T Consensus 19 ~~~G~WGCCP~ 29 (30)
T 1i8x_A 19 SPYGVWYCSPF 29 (30)
T ss_dssp CTTSCEEEEEC
T ss_pred cCCCCEecCcC
Confidence 35689999543
No 66
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.45 E-value=53 Score=17.51 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHh
Q 039296 49 DALQNLDQITQWILS 63 (116)
Q Consensus 49 ~~l~~l~~v~~~l~~ 63 (116)
+++++|+.+++.+.+
T Consensus 6 e~~r~l~~ivq~lq~ 20 (32)
T 2akf_A 6 EDVRNLNAIVQKLQE 20 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566788888887754
No 67
>1d2z_A Death domain of pelle; six-helix bundle, linear array of death domains, plastic interfaces, apoptosis; HET: EPE; 2.00A {Drosophila melanogaster} SCOP: a.77.1.2 PDB: 1ik7_A 1ygo_A
Probab=22.36 E-value=70 Score=21.30 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=14.2
Q ss_pred HhCCccHHHHHHHHHHH
Q 039296 62 LSHEWTVRDLWNMMVEY 78 (116)
Q Consensus 62 ~~k~~tVgdL~~~L~~y 78 (116)
-.++-||++|+++|.+-
T Consensus 71 g~~n~TV~~L~~lL~k~ 87 (108)
T 1d2z_A 71 GQYNHTVQTLFALFKKL 87 (108)
T ss_dssp HHHCCBHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHc
Confidence 34889999999999764
No 68
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=22.35 E-value=1.4e+02 Score=18.95 Aligned_cols=33 Identities=12% Similarity=0.195 Sum_probs=24.4
Q ss_pred eeccChhHHHHHHHHHHHHHhCCccHHHHHHHHH
Q 039296 43 YYTFGIDALQNLDQITQWILSHEWTVRDLWNMMV 76 (116)
Q Consensus 43 Y~tf~d~~l~~l~~v~~~l~~k~~tVgdL~~~L~ 76 (116)
|-.|+++++..+..+. .+++.|+++.++-.++.
T Consensus 37 ~R~Y~~~dl~~l~~I~-~lr~~G~sl~~I~~~l~ 69 (108)
T 2vz4_A 37 HRRYSDADLDRLQQIL-FYRELGFPLDEVAALLD 69 (108)
T ss_dssp CEEBCHHHHHHHHHHH-HHHHTTCCHHHHHHHHT
T ss_pred CeecCHHHHHHHHHHH-HHHHCCCCHHHHHHHHh
Confidence 4456777777776644 45889999999988874
No 69
>2a9i_A IRAK-4, interleukin-1 receptor-associated kinase-4; hexahelical bundle, transferase; 1.70A {Mus musculus} PDB: 3mop_G
Probab=22.09 E-value=71 Score=21.36 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=16.7
Q ss_pred HHHHHHhCCccHHHHHHHHHHH
Q 039296 57 ITQWILSHEWTVRDLWNMMVEY 78 (116)
Q Consensus 57 v~~~l~~k~~tVgdL~~~L~~y 78 (116)
+.+.-..++-||++|+++|.+-
T Consensus 70 LL~~Wg~~~~TV~~Ll~lL~~~ 91 (113)
T 2a9i_A 70 LLFDWGTTNCTVGDLVDLLVQI 91 (113)
T ss_dssp HHHHHGGGTCBHHHHHHHHHHT
T ss_pred HHHHHccCCCcHHHHHHHHHHc
Confidence 3444456899999999999765
No 70
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=21.94 E-value=1.2e+02 Score=20.26 Aligned_cols=48 Identities=15% Similarity=0.164 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHhhhcC---CCcchhHHhhhhhhccC
Q 039296 55 DQITQWILSHEWTVRDLWNMMVEYSSQRLNG---RTNLGFFAWLLPSLTSH 102 (116)
Q Consensus 55 ~~v~~~l~~k~~tVgdL~~~L~~y~~~~~~~---~~~~~lf~wLl~~ls~~ 102 (116)
...+..--++.+|+.+||+.|.+-.+.-... ....+.=.=|.++||-+
T Consensus 34 ~~AI~~sp~~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLSln 84 (110)
T 3l2c_A 34 SQAIESAPEKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLSLH 84 (110)
T ss_dssp HHHHHHSTTSCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHHHC
T ss_pred HHHHHhCCccCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhccHh
Confidence 3344444577899999999998644332111 12456777788888754
No 71
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=21.39 E-value=2.4e+02 Score=20.47 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=33.9
Q ss_pred ceeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccChhHHHHHHHHH
Q 039296 7 GIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFGIDALQNLDQIT 58 (116)
Q Consensus 7 ~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~~l~~l~~v~ 58 (116)
.||----|||.||-.++.- .+.+........ +.++.|+++.++-+++++
T Consensus 143 SIAfPaIstGi~G~P~~~a--a~ial~~v~~~~-V~fv~f~~~~~~~~~~~l 191 (193)
T 3ejg_A 143 TPLTPILSCGIFGIKLETS--LEVLLDVCNTKE-VKVFVYTDTEVCKVKDFV 191 (193)
T ss_dssp CEEECCTTCGGGCCCHHHH--HHHHHHHCCSSC-EEEEECSHHHHHHHHHHH
T ss_pred ceeecccccCCCCCCHHHH--HHHHHHHHhcCe-EEEEEcCHHHHHHHHHHh
Confidence 4677777999999887653 355555555566 668899998876665543
No 72
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=21.16 E-value=2.3e+02 Score=22.04 Aligned_cols=61 Identities=10% Similarity=0.279 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhCCcc-----------------HHHHHHHHHHHHHhhh-----------cCCCcchhHHhhhhhhcc
Q 039296 50 ALQNLDQITQWILSHEWT-----------------VRDLWNMMVEYSSQRL-----------NGRTNLGFFAWLLPSLTS 101 (116)
Q Consensus 50 ~l~~l~~v~~~l~~k~~t-----------------VgdL~~~L~~y~~~~~-----------~~~~~~~lf~wLl~~ls~ 101 (116)
.++++..+++++++++++ .|=||+++..|.-... ....+..|+.|.-.++.+
T Consensus 76 k~eNv~~al~~~~~~g~~lv~i~~~DIvdGn~~liLgLiW~li~~~~i~~~~~~~~~~~~~~~~~~k~~LL~W~~~~~~~ 155 (347)
T 4b7l_A 76 QLENVSVALEFLDRESIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPVWEDEGDDDAKKQTPKQRLLGWIQNKIPY 155 (347)
T ss_dssp HHHHHHHHHHHHHHTTCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHHTTSSCCC-------CCCCHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhccccCCCCcchhhcCCHhhHHHHHHHHHHHHhhhhhhcccccchhhhhhhHHHHHHHHHHhhCCC
Confidence 456778888888876544 4557888888852211 012356799999888765
Q ss_pred CCCCCCCCC
Q 039296 102 HNFISPASD 110 (116)
Q Consensus 102 ~~~~~~~~~ 110 (116)
.+-..-++|
T Consensus 156 ~~v~nF~~s 164 (347)
T 4b7l_A 156 LPITNFNQN 164 (347)
T ss_dssp SCCCCSSGG
T ss_pred cccCCCCCC
Confidence 443333333
No 73
>1mus_A TN5 transposase; hairpin, DNA binding, transcription/DNA complex; HET: DNA; 1.90A {Escherichia coli} SCOP: c.55.3.4 PDB: 1mur_A* 4dm0_A* 1mm8_A 1muh_A* 3ecp_A* 1b7e_A*
Probab=20.97 E-value=1.2e+02 Score=25.22 Aligned_cols=63 Identities=14% Similarity=0.048 Sum_probs=45.7
Q ss_pred CCCHHHHHHHHHHHHHhcCCCeEeeeccChh-HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhh
Q 039296 19 GGDPELKAIIQWLAASQASRPFVLYYTFGID-ALQNLDQITQWILSHEWTVRDLWNMMVEYSSQR 82 (116)
Q Consensus 19 gGD~qLK~lIQwiAAS~Agr~~l~Y~tf~d~-~l~~l~~v~~~l~~k~~tVgdL~~~L~~y~~~~ 82 (116)
-||++|.-=+..|+.+++..|-- -.+..-. .-.+.+..++++.+.++|..+|+....+-..++
T Consensus 22 lgD~Rl~~R~~~l~~~l~~~p~~-sip~a~~~~wa~tkaaYRFl~N~~vt~~~Il~~h~~~T~~r 85 (477)
T 1mus_A 22 LGDPRRTARLVNVAAQLAKYSGK-SITISSEGSKAAQEGAYRFIRNPNVSAEAIRKAGAMQTVKL 85 (477)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTS-CHHHHTTTCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccCc-chhhhccCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 58999999889999888888831 1111111 234567889999999999999999887655444
No 74
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=20.57 E-value=1.9e+02 Score=19.23 Aligned_cols=33 Identities=9% Similarity=0.157 Sum_probs=22.8
Q ss_pred ccChhHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Q 039296 45 TFGIDALQNLDQITQWILSHEWTVRDLWNMMVEY 78 (116)
Q Consensus 45 tf~d~~l~~l~~v~~~l~~k~~tVgdL~~~L~~y 78 (116)
.|+++++..+..+. .+++.++++.++-.+|..+
T Consensus 38 ~Y~~~dl~~l~~I~-~lr~~G~sl~eI~~~l~~~ 70 (135)
T 1q06_A 38 TYTQQHLNELTLLR-QARQVGFNLEESGELVNLF 70 (135)
T ss_dssp ECCHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHH
T ss_pred eeCHHHHHHHHHHH-HHHHCCCCHHHHHHHHHhh
Confidence 46666676665544 4578889988888887544
No 75
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=20.54 E-value=1.1e+02 Score=20.71 Aligned_cols=59 Identities=10% Similarity=-0.001 Sum_probs=35.2
Q ss_pred CCceeccccCCccCCCCHHHHHHHHHHHH-----HhcCCCeEeeeccChh--HH-HHHHHHHHHHHhCCc
Q 039296 5 LPGIATGNWGCGAFGGDPELKAIIQWLAA-----SQASRPFVLYYTFGID--AL-QNLDQITQWILSHEW 66 (116)
Q Consensus 5 ~~~I~TGnWGCGaFgGD~qLK~lIQwiAA-----S~Agr~~l~Y~tf~d~--~l-~~l~~v~~~l~~k~~ 66 (116)
.+.|.|--|.-+ =.+++|..|.++.. .+.|++...+.+.+.. .. .-+.++.+.+...++
T Consensus 74 ~ii~gsP~y~~~---~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~ 140 (200)
T 2a5l_A 74 GLALGSPTRFGN---MASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGM 140 (200)
T ss_dssp EEEEEEECBTTB---CCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEcChhccC---ccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCC
Confidence 345555555422 25899999999876 3688996656666532 12 234455555554554
No 76
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=20.45 E-value=68 Score=22.01 Aligned_cols=46 Identities=7% Similarity=0.015 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHH----HhcCCCeEeeeccCh-h--HHHHHHHHHHHHHhCCc
Q 039296 21 DPELKAIIQWLAA----SQASRPFVLYYTFGI-D--ALQNLDQITQWILSHEW 66 (116)
Q Consensus 21 D~qLK~lIQwiAA----S~Agr~~l~Y~tf~d-~--~l~~l~~v~~~l~~k~~ 66 (116)
.+++|..|.++.. .+.|++...+.+.+. . ....+.++.+.+...++
T Consensus 68 ~~~lk~fld~~~~~~~~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g~ 120 (188)
T 2ark_A 68 SWKMKRFFDDVLGDLWGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGF 120 (188)
T ss_dssp CHHHHHHHHHTGGGTTTSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHhhhhHHHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCCc
Confidence 3689999999875 577888665656432 1 22345566665555444
No 77
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=20.28 E-value=65 Score=20.23 Aligned_cols=15 Identities=20% Similarity=0.441 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHHh
Q 039296 21 DPELKAIIQWLAASQ 35 (116)
Q Consensus 21 D~qLK~lIQwiAAS~ 35 (116)
++.+..++++|....
T Consensus 6 ~~~i~~~~~~i~~~~ 20 (113)
T 3oio_A 6 QPKLTEAVSLMEANI 20 (113)
T ss_dssp CHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHhhh
Confidence 455666666665544
No 78
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=20.25 E-value=39 Score=19.67 Aligned_cols=20 Identities=25% Similarity=0.302 Sum_probs=13.0
Q ss_pred CCCHHHHHHHHHHHHHhcCC
Q 039296 19 GGDPELKAIIQWLAASQASR 38 (116)
Q Consensus 19 gGD~qLK~lIQwiAAS~Agr 38 (116)
-|||++|.=+-=++--++.+
T Consensus 14 EGdP~iK~~~R~~~~e~a~~ 33 (48)
T 3c01_A 14 EGNPEVKSKRREVHMEILSE 33 (48)
T ss_pred cCCHHHHHHHHHHHHHHHHh
Confidence 48999998765555444443
No 79
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=20.21 E-value=1.3e+02 Score=23.14 Aligned_cols=59 Identities=20% Similarity=0.372 Sum_probs=45.4
Q ss_pred CceeccccCCccCCCCHHHHHHHHHHHHHhcCCCeEeeeccC-hhHHHHHHHHHHHHHhCCc
Q 039296 6 PGIATGNWGCGAFGGDPELKAIIQWLAASQASRPFVLYYTFG-IDALQNLDQITQWILSHEW 66 (116)
Q Consensus 6 ~~I~TGnWGCGaFgGD~qLK~lIQwiAAS~Agr~~l~Y~tf~-d~~l~~l~~v~~~l~~k~~ 66 (116)
+.|+||.-.+..=-+--...+.|.+++. .|.+-+.||+.+ .+.++++..|.+.+.++++
T Consensus 129 VkIsTGp~Ss~~~~~~V~vetAiaml~d--mG~~SvKffPm~Gl~~l~E~~avAka~a~~g~ 188 (249)
T 3m0z_A 129 VKISTGPLSSGAADGIVPLETAIALLKD--MGGSSIKYFPMGGLKHRAEFEAVAKACAAHDF 188 (249)
T ss_dssp EECCCSTTGGGSSCCEEEHHHHHHHHHH--TTCCEEEECCCTTTTTHHHHHHHHHHHHHTTC
T ss_pred EEeccCccccCCCCceeeHHHHHHHHHH--cCCCeeeEeecCCcccHHHHHHHHHHHHHcCc
Confidence 3588888776655566678888888864 477879999888 4678889999999888765
No 80
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=20.20 E-value=26 Score=26.79 Aligned_cols=41 Identities=10% Similarity=0.228 Sum_probs=25.1
Q ss_pred CCCceeccccCCccCCCCHHHHHHHHHHHHH-h---cCCCeEeeeccC
Q 039296 4 DLPGIATGNWGCGAFGGDPELKAIIQWLAAS-Q---ASRPFVLYYTFG 47 (116)
Q Consensus 4 ~~~~I~TGnWGCGaFgGD~qLK~lIQwiAAS-~---Agr~~l~Y~tf~ 47 (116)
+.+.|.|--|+-+.. +++|..|.|+... . .|++...+.+.+
T Consensus 309 d~iiigsP~y~~~~~---~~~k~~ld~l~~~~~~~l~~k~~~~~~~~g 353 (404)
T 2ohh_A 309 GAIALGAPTIYDEPY---PSVGDLLMYLRGLKFNRTLTRKALVFGSMG 353 (404)
T ss_dssp SEEEEECCEETTEEC---THHHHHHHHHHHHCGGGTCCEEEEEEEEES
T ss_pred CEEEEECccccccch---HHHHHHHHHhhhccccccCCCEEEEEEecC
Confidence 445667777765553 3688888887642 2 577755454544
Done!