RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 039298
         (197 letters)



>d2qalk1 c.55.4.1 (K:12-128) Ribosomal protein S11 {Escherichia coli
           [TaxId: 562]}
          Length = 117

 Score =  116 bits (292), Expect = 2e-34
 Identities = 47/133 (35%), Positives = 63/133 (47%), Gaps = 23/133 (17%)

Query: 61  GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKEL 120
           GVAHI ASFN+T + +TD  G        GG        +S+P+AA +AA+  +   KE 
Sbjct: 7   GVAHIHASFNNTIVTITDRQGNALGWATAGGS-GFRGSRKSTPFAAQVAAERCADAVKEY 65

Query: 121 GITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIDLEGLLILGLYYISEDVTP 180
           GI  L + +        K PGPG +S +RAL  +G +I  I               DVTP
Sbjct: 66  GIKNLEVMV--------KGPGPGRESTIRALNAAGFRITNI--------------TDVTP 103

Query: 181 IPTDSTRRKGGRR 193
           IP +  R    RR
Sbjct: 104 IPHNGCRPPKKRR 116


>d2uubk1 c.55.4.1 (K:11-129) Ribosomal protein S11 {Thermus
           thermophilus [TaxId: 274]}
          Length = 119

 Score =  108 bits (271), Expect = 3e-31
 Identities = 38/133 (28%), Positives = 61/133 (45%), Gaps = 23/133 (17%)

Query: 61  GVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKEL 120
           G A+I AS+N+T + +TD  G       +GG+       + +PYAA LAA D + +    
Sbjct: 7   GRAYIHASYNNTIVTITDPDGNPITWS-SGGVIGYKGSRKGTPYAAQLAALDAAKKAMAY 65

Query: 121 GITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIDLEGLLILGLYYISEDVTP 180
           G+ ++ + +R          G G + A+RAL  SG+++  I               D TP
Sbjct: 66  GMQSVDVIVRG--------TGAGREQAIRALQASGLQVKSI--------------VDDTP 103

Query: 181 IPTDSTRRKGGRR 193
           +P +  R K   R
Sbjct: 104 VPHNGCRPKKKFR 116


>d1mr7a_ b.81.1.3 (A:) Xenobiotic acetyltransferase {Enterococcus
          faecium, VAT(D) [TaxId: 1352]}
          Length = 203

 Score = 25.2 bits (54), Expect = 5.1
 Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 18 LGTNPSLLNPSRVFAGMSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIH 75
          +G NP  + P      +   K        +     V  GE+ +  +    +F+   ++
Sbjct: 1  MGPNPMKMYPIEGNKSVQFIKP------ILEKLENVEVGEYSYYDSKNGETFDKQILY 52


>d2f1da1 d.14.1.9 (A:10-95) Imidazole glycerol phosphate dehydratase
           {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 86

 Score = 23.9 bits (52), Expect = 5.7
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 118 KELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIDLEGLLILGLYYISED 177
           KE  ++ + I L  TG   + +  P     L  LA  G+    +   G + +  ++ +ED
Sbjct: 11  KETNVS-VKINLDGTGVADSSSGIPFLDHMLDQLASHGLFDVHVRATGDVHIDDHHTNED 69

Query: 178 V 178
           +
Sbjct: 70  I 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 698,424
Number of extensions: 30147
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 5
Length of query: 197
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 116
Effective length of database: 1,295,466
Effective search space: 150274056
Effective search space used: 150274056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)