BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039300
(534 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 90.5 bits (223), Expect = 2e-18, Method: Composition-based stats.
Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 5/120 (4%)
Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
R PLH AA +G++++V+ LLEA + K D NG TPLHLAA NG L+V+KLL+ D
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
+ +D + R+ LH+AA++G+ +V +L E +N D+NG T LHLAA H +VV
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Score = 77.4 bits (189), Expect = 2e-14, Method: Composition-based stats.
Identities = 45/109 (41%), Positives = 71/109 (65%), Gaps = 2/109 (1%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
+VK+L +N D + R PLH AA +G++++V+ LLEA + K D NG TPLHLA
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLA 75
Query: 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 253
A NG L+V+KLL+ D + +D + R+ LH+AA++G+ +V +L++
Sbjct: 76 ARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123
Score = 72.8 bits (177), Expect = 4e-13, Method: Composition-based stats.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 5/107 (4%)
Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
NG TPLHLAA NG L+V+KLL+ D + +D + R+ LH+AA++G+ +V +L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56
Query: 256 MENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSAR 302
+N D+NG T LHLAA H +VV L ++ AK+++ R
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVV-KLLLEAGADVNAKDKNGR 102
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 52/170 (30%), Positives = 75/170 (44%), Gaps = 50/170 (29%)
Query: 48 GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE 107
G TPLH H V+++L+E A + +K +TPL +A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAA----------------- 43
Query: 108 SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPL 167
+N L +VK+L +N D + R PL
Sbjct: 44 --------------------RNGHLE-----------VVKLLLEAGADVNAKDKNGRTPL 72
Query: 168 HYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
H AA +G++++V+ LLEA + K D NG TPLHLAA NG L+V+KLL+
Sbjct: 73 HLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLL 121
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 46/182 (25%), Positives = 71/182 (39%), Gaps = 62/182 (34%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AAR G +V +++ VN +D G TPLH H V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEV 50
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123
+++L+E A + +K +TPL +A
Sbjct: 51 VKLLLEA-GADVNAKDKNGRTPLHLAA--------------------------------- 76
Query: 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL 183
+N L +VK+L +N D + R PLH AA +G++++V+ LL
Sbjct: 77 ----RNGHLE-----------VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 184 EA 185
EA
Sbjct: 122 EA 123
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 135/297 (45%), Gaps = 35/297 (11%)
Query: 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
D+TPLH AARIG +V +++ N A +A G+TPLH + H
Sbjct: 80 DQTPLHCAARIGHTNMVKLLLENNANPNLATTA-------------GHTPLHIAAREGHV 126
Query: 62 RVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121
+ L+EK+++ + K + TPL +A +A ++++ + A + + LT L
Sbjct: 127 ETVLALLEKEASQACMTKKGF-TPLHVAAKYGKVRVAELLLERDAHPNAAGK--NGLTPL 183
Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
H V N D+ VK+L + W+ PLH AA V++ +
Sbjct: 184 HVAVHHNNLDI-------------VKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230
Query: 182 LLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241
LL+ A G TPLHLAA+ G +++ LL++K + + + S + LH+ A+
Sbjct: 231 LLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQE 288
Query: 242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA-MGLHSDVVFTLSRHKSVNIRAK 297
G+ + ++K M ++ R G T LH+A+ G V F L VN + K
Sbjct: 289 GHVPVADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 342
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 70/142 (49%), Gaps = 11/142 (7%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLH 202
+ K L NK +N + PLH AA G+ MV+ LLE A+ LA G TPLH
Sbjct: 62 VAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA---TTAGHTPLH 118
Query: 203 LAAENGELK-VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLIN 261
+AA G ++ VL LL + A + + LHVAAK+G + +L E + N
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTKKG--FTPLHVAAKYGKVRVAELLL---ERDAHPN 173
Query: 262 LIDRNGNTSLHLAAMGLHSDVV 283
+NG T LH+A + D+V
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIV 195
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 30/213 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLHIAA+ + +++Y GSA+ ++G TPLH + H +
Sbjct: 214 TPLHIAAKQNQVEVARSLLQY------GGSANA-------ESVQGVTPLHLAAQEGHAEM 260
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123
+ +L+ K A + NK+ TPL + +A +I TR+ T LH
Sbjct: 261 VALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM--GYTPLHV 317
Query: 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL 183
N L K + Q D+ K +L + +PLH AA G+ +V LL
Sbjct: 318 ASHYGNIKLVKFLLQHQ-ADVNAKT---------KLGY---SPLHQAAQQGHTDIVTLLL 364
Query: 184 EASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
+ + +G TPL +A G + V +L
Sbjct: 365 KNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVL 396
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 17/109 (15%)
Query: 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
M TPLH+A+ G+ +V ++++ VN + G +PLH + H
Sbjct: 310 MGYTPLHVASHYGNIKLVKFLLQHQADVN-------------AKTKLGYSPLHQAAQQGH 356
Query: 61 KRVIRILVEKDSAPSSYINKAYQTPLSIAID---VRLNDIACFIIDKSS 106
++ +L++ ++P+ ++ TPL+IA + + D+ + D++S
Sbjct: 357 TDIVTLLLKNGASPNE-VSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 404
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 199 TPLHLAAENGELKVLKLLINK--YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 256
TPLH+A+ G L ++K L+ + P+ ++ + LH+AA+ G+ + ++L++
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETP---LHMAARAGHTEVAKYLLQN--- 69
Query: 257 ENLINLIDRNGNTSLHLAAMGLHSDVV 283
+ +N ++ T LH AA H+++V
Sbjct: 70 KAKVNAKAKDDQTPLHCAARIGHTNMV 96
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 51/144 (35%), Positives = 77/144 (53%), Gaps = 5/144 (3%)
Query: 146 VKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA 205
VK L N +N D R PLHYAA G+ ++V+ L+ + K D +G TPLH AA
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAA 78
Query: 206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR 265
+ G +++KLLI+K D + +D+ R+ LH AAK G+ IV ++ +N D
Sbjct: 79 KEGHKEIVKLLISKGAD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD---VNTSDS 134
Query: 266 NGNTSLHLAAMGLHSDVVFTLSRH 289
+G T L LA + ++V L +
Sbjct: 135 DGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 68.6 bits (166), Expect = 8e-12, Method: Composition-based stats.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
+VK+L + +N D R PLHYAA G+ ++V+ L+ + K D +G TPLH A
Sbjct: 52 IVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYA 110
Query: 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
A+ G +++KLLI+K D + D+ R+ L +A +HGN IV + K
Sbjct: 111 AKEGHKEIVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 44/172 (25%), Positives = 70/172 (40%), Gaps = 50/172 (29%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
D +G TPLH + HK ++++L+ K + DV D
Sbjct: 34 DSDGRTPLHYAAKEGHKEIVKLLISKGA------------------DVNAKD-------- 67
Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
D T LH+ + ++ VK+L + +N D R
Sbjct: 68 ----------SDGRTPLHYAAKEGHKEI-------------VKLLISKGADVNAKDSDGR 104
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
PLHYAA G+ ++V+ L+ + D +G TPL LA E+G +++KLL
Sbjct: 105 TPLHYAAKEGHKEIVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH AA+ G IV ++ VN +D +G TPLH + HK +
Sbjct: 39 TPLHYAAKEGHKEIVKLLISKGADVNA-------------KDSDGRTPLHYAAKEGHKEI 85
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE---SLNATRLPDELTL 120
+++L+ K A + + +TPL A +I +I K ++ S + R P +L
Sbjct: 86 VKLLISK-GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 121 LH 122
H
Sbjct: 145 EH 146
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 74.3 bits (181), Expect = 1e-13, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 62/90 (68%), Gaps = 2/90 (2%)
Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
R PLH AA +G++++V+ LLEA + K D NG TPLHLAA NG L+V+KLL+ D
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD- 60
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKS 253
+ +D + R+ LH+AA++G+ +V +L++
Sbjct: 61 VNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/88 (45%), Positives = 56/88 (63%), Gaps = 4/88 (4%)
Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
NG TPLHLAA NG L+V+KLL+ D + +D + R+ LH+AA++G+ +V +L E
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLL---E 56
Query: 256 MENLINLIDRNGNTSLHLAAMGLHSDVV 283
+N D+NG T LHLAA H +VV
Sbjct: 57 AGADVNAKDKNGRTPLHLAARNGHLEVV 84
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
+VK+L +N D + R PLH AA +G++++V+ LLEA + K D NG TPLHLA
Sbjct: 17 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLA 75
Query: 205 AENGELKVLKLLI 217
A NG L+V+KLL+
Sbjct: 76 ARNGHLEVVKLLL 88
Score = 37.0 bits (84), Expect = 0.027, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AAR G +V +++ VN +D G TPLH H V
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEV 50
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIA 89
+++L+E A + +K +TPL +A
Sbjct: 51 VKLLLEA-GADVNAKDKNGRTPLHLA 75
Score = 34.3 bits (77), Expect = 0.19, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AAR G +V +++ VN +D G TPLH H V
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEV 83
Query: 64 IRILVE 69
+++L+E
Sbjct: 84 VKLLLE 89
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEA 185
+VK+L +N D + R PLH AA +G++++V+ LLEA
Sbjct: 50 VVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 74.3 bits (181), Expect = 1e-13, Method: Composition-based stats.
Identities = 50/146 (34%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA G++++V+ LL+A + K D +G TPLH
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLH 73
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ D + +D + LH+AA+ G+ IV +LK+ +N
Sbjct: 74 LAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNA 129
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T LA H D+ L +
Sbjct: 130 QDKFGKTPFDLAIREGHEDIAEVLQK 155
Score = 65.1 bits (157), Expect = 9e-11, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ +D +G TPLHLAA G L+++++L+ D + +D
Sbjct: 9 AARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDK 66
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ LH+AA+ G+ IV +LK+ +N D++G T LHLAA H ++V L +
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK- 122
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEV 320
++ A+++ + L I E D+ EV
Sbjct: 123 AGADVNAQDKFGKTPFDLAIRE-GHEDIAEV 152
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 21/115 (18%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVN--------------QAGSASVLETLF------GM 43
TPLH+AAR G IV ++K VN + G ++E L
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+D +G TPLH + H ++ +L+ K A + +K +TP +AI DIA
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTPFDLAIREGHEDIA 150
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 5/144 (3%)
Query: 146 VKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA 205
VK L N +N D R PLH+AA +G+ ++V+ L+ + K D +G TPLH AA
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAA 78
Query: 206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR 265
ENG +V+KLLI+K D + +D+ R+ LH AA++G+ +V ++ +N D
Sbjct: 79 ENGHKEVVKLLISKGAD-VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNTSDS 134
Query: 266 NGNTSLHLAAMGLHSDVVFTLSRH 289
+G T L LA + +VV L +
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 65/108 (60%), Gaps = 2/108 (1%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
+VK+L + +N D R PLH+AA +G+ ++V+ L+ + K D +G TPLH A
Sbjct: 52 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHA 110
Query: 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
AENG +V+KLLI+K D + D+ R+ L +A +HGN +V + K
Sbjct: 111 AENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 70/172 (40%), Gaps = 50/172 (29%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
D +G TPLH+ HK V+++L+ K A + + +TPL A + ++ +I K
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
++ +N D R
Sbjct: 93 GAD------------------------------------------------VNAKDSDGR 104
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
PLH+AA +G+ ++V+ L+ + D +G TPL LA E+G +V+KLL
Sbjct: 105 TPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH AA G +V ++ VN +D +G TPLH+ HK V
Sbjct: 39 TPLHHAAENGHKEVVKLLISKGADVNA-------------KDSDGRTPLHHAAENGHKEV 85
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE---SLNATRLPDELTL 120
+++L+ K A + + +TPL A + ++ +I K ++ S + R P +L
Sbjct: 86 VKLLISK-GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR 144
Query: 121 LH 122
H
Sbjct: 145 EH 146
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 52/144 (36%), Positives = 76/144 (52%), Gaps = 5/144 (3%)
Query: 146 VKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA 205
VK L N N D R PLHYAA +G+ ++V+ LL +D +G TPLH AA
Sbjct: 20 VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAA 78
Query: 206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR 265
ENG +++KLL++K D +D+ R+ LH AA++G+ IV +L N D
Sbjct: 79 ENGHKEIVKLLLSKGADP-NAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP---NTSDS 134
Query: 266 NGNTSLHLAAMGLHSDVVFTLSRH 289
+G T L LA + ++V L +
Sbjct: 135 DGRTPLDLAREHGNEEIVKLLEKQ 158
Score = 68.6 bits (166), Expect = 9e-12, Method: Composition-based stats.
Identities = 42/108 (38%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
+VK+L + N D R PLHYAA +G+ ++V+ LL +D +G TPLH A
Sbjct: 52 IVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYA 110
Query: 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
AENG +++KLL++K D D+ R+ L +A +HGN IV + K
Sbjct: 111 AENGHKEIVKLLLSKGADP-NTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/172 (24%), Positives = 69/172 (40%), Gaps = 50/172 (29%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
D +G TPLH HK ++++L+ K + P++ + +TPL A + +I ++ K
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG-RTPLHYAAENGHKEIVKLLLSK 92
Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
++ N D R
Sbjct: 93 GADP------------------------------------------------NAKDSDGR 104
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
PLHYAA +G+ ++V+ LL D +G TPL LA E+G +++KLL
Sbjct: 105 TPLHYAAENGHKEIVKLLLSKGAD-PNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 17/122 (13%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH AA G IV ++ N +D +G TPLH HK +
Sbjct: 39 TPLHYAAENGHKEIVKLLLSKGADPNA-------------KDSDGRTPLHYAAENGHKEI 85
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE---SLNATRLPDELTL 120
+++L+ K + P++ + +TPL A + +I ++ K ++ S + R P +L
Sbjct: 86 VKLLLSKGADPNAKDSDG-RTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAR 144
Query: 121 LH 122
H
Sbjct: 145 EH 146
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 49/146 (33%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA G++++V+ LL+A + K D +G TPLH
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLH 73
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ D + +D + LH+AA+ G+ IV +LK+ +N
Sbjct: 74 LAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNA 129
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T LA + D+ L +
Sbjct: 130 QDKFGKTPFDLAIDNGNEDIAEVLQK 155
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/151 (32%), Positives = 81/151 (53%), Gaps = 7/151 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ +D +G TPLHLAA G L+++++L+ D + +D
Sbjct: 9 AARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDK 66
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ LH+AA+ G+ IV +LK+ +N D++G T LHLAA H ++V L +
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK- 122
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEV 320
++ A+++ + L ID D+ EV
Sbjct: 123 AGADVNAQDKFGKTPFDLAIDNGNE-DIAEV 152
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 21/115 (18%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVN--------------QAGSASVLETLF------GM 43
TPLH+AAR G IV ++K VN + G ++E L
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+D +G TPLH + H ++ +L+ K A + +K +TP +AID DIA
Sbjct: 97 KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTPFDLAIDNGNEDIA 150
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 71.6 bits (174), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 15/151 (9%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCN-----G 197
D V+IL N +N DW PLH AA +G++++V+ LL+ Y D N G
Sbjct: 27 DDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLK------YGADVNAWDNYG 80
Query: 198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME 257
ATPLHLAA+NG L+++++L+ D + +D + LH+AA G+ IV +LK
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHGAD-VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD- 138
Query: 258 NLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
+N D+ G T+ ++ + D+ L +
Sbjct: 139 --VNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 61.6 bits (148), Expect = 9e-10, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D G TPLHLAA+ G L+++++L+ KY + DN
Sbjct: 21 AARAGQDDEV-RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDN 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ LH+AA +G+ IV +LK +N D G T LHLAA H ++V L ++
Sbjct: 79 YGATPLHLAADNGHLEIVEVLLKHGAD---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKY 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
+ ++ A+++ + + ID D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 21/118 (17%)
Query: 1 MDETPLHIAARIGDHAIVSEIMKYVPAVN--------------QAGSASVLETLF----- 41
+ TPLH+AA+ G IV ++KY VN G ++E L
Sbjct: 46 LGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD 105
Query: 42 -GMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+D EG TPLH H ++ +L+ K A + +K +T I+ID D+A
Sbjct: 106 VNAKDYEGFTPLHLAAYDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 5/144 (3%)
Query: 146 VKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA 205
VK L N +N D + PLH AA +G+ ++V+ LL +D +G TPLHLAA
Sbjct: 20 VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAA 78
Query: 206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR 265
ENG +V+KLL+++ D +D+ ++ LH+AA++G+ +V +L N D
Sbjct: 79 ENGHKEVVKLLLSQGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQGADP---NTSDS 134
Query: 266 NGNTSLHLAAMGLHSDVVFTLSRH 289
+G T L LA + +VV L +
Sbjct: 135 DGRTPLDLAREHGNEEVVKLLEKQ 158
Score = 63.9 bits (154), Expect = 2e-10, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 2/108 (1%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
+VK+L + N D + PLH AA +G+ ++V+ LL +D +G TPLHLA
Sbjct: 52 VVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLA 110
Query: 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
AENG +V+KLL+++ D D+ R+ L +A +HGN +V + K
Sbjct: 111 AENGHKEVVKLLLSQGADP-NTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 50/172 (29%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
D +G TPLH HK V+++L+ + + P++ + +TPL +A + ++ ++ +
Sbjct: 34 DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDG-KTPLHLAAENGHKEVVKLLLSQ 92
Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
++ N D +
Sbjct: 93 GADP------------------------------------------------NAKDSDGK 104
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
PLH AA +G+ ++V+ LL D +G TPL LA E+G +V+KLL
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGAD-PNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 44/87 (50%), Gaps = 14/87 (16%)
Query: 3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
+TPLH+AA G +V ++ +Q + +D +G TPLH HK
Sbjct: 71 KTPLHLAAENGHKEVVKLLL------SQGADPNA-------KDSDGKTPLHLAAENGHKE 117
Query: 63 VIRILVEKDSAPSSYINKAYQTPLSIA 89
V+++L+ + + P++ + +TPL +A
Sbjct: 118 VVKLLLSQGADPNTSDSDG-RTPLDLA 143
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
+TPLH+AA G +V ++ +Q + +D +G TPLH HK
Sbjct: 38 KTPLHLAAENGHKEVVKLLL------SQGADPNA-------KDSDGKTPLHLAAENGHKE 84
Query: 63 VIRILVEKDSAPSSYINKAYQTPLSIAID 91
V+++L+ + + P++ + +TPL +A +
Sbjct: 85 VVKLLLSQGADPNAKDSDG-KTPLHLAAE 112
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 69.3 bits (168), Expect = 5e-12, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA G++++V+ LL+A + K D +G TPLH
Sbjct: 27 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ D + +D + LH+AA+ G+ IV +LK+ +N
Sbjct: 86 LAAREGHLEIVEVLLKAGAD-VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD---VNA 141
Query: 263 IDRNGNTSLHLA 274
D+ G T+ ++
Sbjct: 142 QDKFGKTAFDIS 153
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ +D +G TPLHLAA G L+++++L+ D + +D
Sbjct: 21 AARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAKDK 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ LH+AA+ G+ IV +LK+ +N D++G T LHLAA H ++V L +
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAGAD---VNAKDKDGYTPLHLAAREGHLEIVEVLLK- 134
Query: 290 KSVNIRAKNRSARNNTTLEID 310
++ A+++ + + ID
Sbjct: 135 AGADVNAQDKFGKTAFDISID 155
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 33/115 (28%), Positives = 51/115 (44%), Gaps = 21/115 (18%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVN--------------QAGSASVLETLF------GM 43
TPLH+AAR G IV ++K VN + G ++E L
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 108
Query: 44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+D +G TPLH + H ++ +L+ K A + +K +T I+ID D+A
Sbjct: 109 KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA++G++++V+ LL+ + D G TPLH
Sbjct: 27 DDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN-ASDLTGITPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ D + DN + LH+AAK+G+ IV +LK +N
Sbjct: 86 LAAATGHLEIVEVLLKHGAD-VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD---VNA 141
Query: 263 IDRNGNTSLHLA 274
D+ G T+ ++
Sbjct: 142 QDKFGKTAFDIS 153
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 77/141 (54%), Gaps = 6/141 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D +G TPLHLAA NG L+++++L+ D + D
Sbjct: 21 AARAGQDDEV-RILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGAD-VNASDL 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ + LH+AA G+ IV +LK +N D +G+T LHLAA H ++V L +H
Sbjct: 79 TGITPLHLAAATGHLEIVEVLLKHGAD---VNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Query: 290 KSVNIRAKNRSARNNTTLEID 310
+ ++ A+++ + + ID
Sbjct: 136 GA-DVNAQDKFGKTAFDISID 155
Score = 38.5 bits (88), Expect = 0.010, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA G IV ++K VN + D+ G TPLH H +
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNAS-------------DLTGITPLHLAAATGHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIA 89
+ +L++ + ++Y N + TPL +A
Sbjct: 96 VEVLLKHGADVNAYDNDGH-TPLHLA 120
Score = 37.4 bits (85), Expect = 0.022, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA G IV ++K+ VN D +G+TPLH H +
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVNA-------------YDNDGHTPLHLAAKYGHLEI 128
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+ K A + +K +T I+ID D+A
Sbjct: 129 VEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA G+ ++V+ LL+ + RD +G TPLH
Sbjct: 27 DDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN-ARDTDGWTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA+NG L+++++L+ KY + +D + LH+AA G+ IV +LK +N
Sbjct: 86 LAADNGHLEIVEVLL-KYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T+ ++ + D+ L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D G+TPLHLAA G +++++L+ D + RD
Sbjct: 21 AARAGQDDEV-RILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGAD-VNARDT 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ LH+AA +G+ IV +LK +N D G T LHLAA H ++V L +H
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLLKYGAD---VNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
+ ++ A+++ + + ID D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA IG IV ++K+ VN RD +G TPLH H +
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNA-------------RDTDGWTPLHLAADNGHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQ-TPLSIAID 91
+ +L++ + ++ AY TPL +A D
Sbjct: 96 VEVLLKYGADVNA--QDAYGLTPLHLAAD 122
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 66.2 bits (160), Expect = 4e-11, Method: Composition-based stats.
Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N N D + R PLH AAA G++++V+ LL + D NG TPLH
Sbjct: 15 DDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-AVDTNGTTPLH 73
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ KY + +D + + L++AA G+ IV +LK +N
Sbjct: 74 LAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGAD---VNA 129
Query: 263 IDRNGNTSLHLA 274
D+ G T+ ++
Sbjct: 130 QDKFGKTAFDIS 141
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 204 AAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLI 263
AA G+ +++L+ DA D+ R+ LH+AA G+ IV +L++ +N +
Sbjct: 9 AARAGQDDEVRILMANGADA-NAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD---VNAV 64
Query: 264 DRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSA 301
D NG T LHLAA H ++V L ++ + ++ AK+ +
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGA-DVNAKDATG 101
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA +G IV ++KY VN +D G TPL+ H +
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADVNA-------------KDATGITPLYLAAYWGHLEI 116
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+ K A + +K +T I+ID+ D+A
Sbjct: 117 VEVLL-KHGADVNAQDKFGKTAFDISIDIGNEDLA 150
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 75/134 (55%), Gaps = 5/134 (3%)
Query: 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
+R+PLH AA +G+V + L++A + + + TPL AAEN L+ +K LI K
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSE-DQRTPLMEAAENNHLEAVKYLI-KAGA 68
Query: 223 AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDV 282
++ +D + LH+AAK G++ +V ++L + +M+ +N D G T + A H D+
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMD--VNCQDDGGWTPMIWATEYKHVDL 126
Query: 283 V-FTLSRHKSVNIR 295
V LS+ +NIR
Sbjct: 127 VKLLLSKGSDINIR 140
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 77/153 (50%), Gaps = 5/153 (3%)
Query: 146 VKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA 205
VK L L++ D LH AA G+ ++VQ LL + +D G TP+ A
Sbjct: 60 VKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR 265
E + ++KLL++K D I IRDN + LH AA G +I +L + + +N+
Sbjct: 120 EYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI--- 175
Query: 266 NGNTSLHLAAMGLHSD-VVFTLSRHKSVNIRAK 297
+G++ LH+AA D VV LSR V ++ K
Sbjct: 176 HGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 208
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
N +PLH AAE G + + +L+ + I+ R+ L AA++ + V +++K+
Sbjct: 10 NKRSPLHAAAEAGHVDICHMLVQAGAN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA 68
Query: 256 MENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
L++ D G+T LHLAA H +VV L + +++ ++
Sbjct: 69 ---LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD 108
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 70/172 (40%), Gaps = 16/172 (9%)
Query: 39 TLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
L +D EG+T LH K H V++ L+ + + TP+ A + + D+
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 99 CFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR 158
++ K S+ +N R +E LH+ F +DI +L DL +
Sbjct: 128 KLLLSKGSD-IN-IRDNEENICLHWAA------------FSGCVDIAEILLAAKCDL-HA 172
Query: 159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGEL 210
++ H +PLH AA V L + K G TPL A+ N ++
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK-EGETPLQCASLNSQV 223
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats.
Identities = 46/120 (38%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AAA+G V R+L A+ D NG TPLHLAA NG+L+++++L+ D + D+
Sbjct: 13 AAAAGQDDEV-RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDS 70
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ + LH+AA G+ IV +LK +N DR G T LHLAA+ ++V L +H
Sbjct: 71 AGITPLHLAAYDGHLEIVEVLLKHGAD---VNAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D + PLH AAA+G +++V+ LL+ + D G TPLH
Sbjct: 19 DDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN-ASDSAGITPLH 77
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
LAA +G L+++++L+ D + D + + LH+AA G IV +LK
Sbjct: 78 LAAYDGHLEIVEVLLKHGAD-VNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQL-AYKRDCNGATPLHL 203
+V++L N +N D PLH AA G++++V+ LL+ + AY R G TPLHL
Sbjct: 54 IVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDR--AGWTPLHL 111
Query: 204 AAENGELKVLKLLINKYPD 222
AA +G+L+++++L+ D
Sbjct: 112 AALSGQLEIVEVLLKHGAD 130
Score = 37.4 bits (85), Expect = 0.020, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA G IV ++K VN + SA G TPLH H +
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNASDSA-------------GITPLHLAAYDGHLEI 87
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIA 89
+ +L++ + ++Y ++A TPL +A
Sbjct: 88 VEVLLKHGADVNAY-DRAGWTPLHLA 112
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 78/146 (53%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D+ PLH AA G++++V+ LL+ + K D G TPLH
Sbjct: 27 DDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK-DSLGVTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ D + D+ + LH+AAK G+ IV +LK+ +N
Sbjct: 86 LAARRGHLEIVEVLLKNGAD-VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T+ ++ + D+ L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 62.0 bits (149), Expect = 8e-10, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 84/155 (54%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ RD G TPLHLAA G L+++++L+ D + +D+
Sbjct: 21 AARAGQDDEV-RILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGAD-VNAKDS 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ LH+AA+ G+ IV +LK+ +N D +G T LHLAA H ++V L ++
Sbjct: 79 LGVTPLHLAARRGHLEIVEVLLKNGAD---VNASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
+ ++ A+++ + + ID D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AAR G IV ++K VN + D G TPLH + H +
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNAS-------------DSHGFTPLHLAAKRGHLEI 128
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+ K+ A + +K +T I+ID D+A
Sbjct: 129 VEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 5/132 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D + PLH AA G++++V+ LL+ + D +G+TPLH
Sbjct: 27 DDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN-ALDFSGSTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA+ G L+++++L+ KY + D + LH+AA G+ IV +LK +N
Sbjct: 86 LAAKRGHLEIVEVLL-KYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD---VNA 141
Query: 263 IDRNGNTSLHLA 274
D+ G T+ ++
Sbjct: 142 QDKFGKTAFDIS 153
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 47/141 (33%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D G TPLHLAA G L+++++L+ D + D
Sbjct: 21 AARAGQDDEV-RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDF 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
S + LH+AAK G+ IV +LK +N D G+T LHLAA H ++V L ++
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGAD---VNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 290 KSVNIRAKNRSARNNTTLEID 310
+ ++ A+++ + + ID
Sbjct: 136 GA-DVNAQDKFGKTAFDISID 155
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
+TPLH+AAR+G IV ++K VN D G+TPLH + H
Sbjct: 48 DTPLHLAARVGHLEIVEVLLKNGADVNAL-------------DFSGSTPLHLAAKRGHLE 94
Query: 63 VIRILVEKDSAPSSYINKAYQTPLSIAID 91
++ +L+ K A + + TPL +A D
Sbjct: 95 IVEVLL-KYGADVNADDTIGSTPLHLAAD 122
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 45/132 (34%), Positives = 72/132 (54%), Gaps = 5/132 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N +D PLH AA SG++++V+ LL+ + D G TPLH
Sbjct: 27 DDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVD-AADVYGFTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ KY + D + + LH+AA G+ IV +LK +N
Sbjct: 86 LAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD---VNA 141
Query: 263 IDRNGNTSLHLA 274
D+ G T+ ++
Sbjct: 142 QDKFGKTAFDIS 153
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 6/141 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D G TPLHLAA +G L+++++L+ D ++ D
Sbjct: 21 AARAGQDDEV-RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADV 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ LH+AA G+ IV +LK +N D G+T LHLAA H ++V L ++
Sbjct: 79 YGFTPLHLAAMTGHLEIVEVLLKYGAD---VNAFDMTGSTPLHLAADEGHLEIVEVLLKY 135
Query: 290 KSVNIRAKNRSARNNTTLEID 310
+ ++ A+++ + + ID
Sbjct: 136 GA-DVNAQDKFGKTAFDISID 155
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
+V++L + ++ D + PLH AA +G++++V+ LL+ + D G+TPLHLA
Sbjct: 62 IVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN-AFDMTGSTPLHLA 120
Query: 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 243
A+ G L+++++L+ KY + +D ++ ++ +GN
Sbjct: 121 ADEGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGN 158
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA G IV ++KY VN D+ G+TPLH + H +
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGADVNAF-------------DMTGSTPLHLAADEGHLEI 128
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+ K A + +K +T I+ID D+A
Sbjct: 129 VEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 14/88 (15%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA G IV ++K+ V+ A D+ G TPLH H +
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGADVDAA-------------DVYGFTPLHLAAMTGHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAID 91
+ +L+ K A + + TPL +A D
Sbjct: 96 VEVLL-KYGADVNAFDMTGSTPLHLAAD 122
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 62.4 bits (150), Expect = 6e-10, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 77/146 (52%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N DW PLH +G++++++ LL+ + + D +G TPLH
Sbjct: 27 DDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ KY + D + LH+AA+ G+ IV +LK +N
Sbjct: 86 LAAYRGHLEIVEVLL-KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T+ ++ + D+ L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 62.0 bits (149), Expect = 7e-10, Method: Composition-based stats.
Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D G TPLHL NG L+++++L+ KY + D
Sbjct: 21 AARAGQDDEV-RILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLL-KYAADVNASDK 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
S + LH+AA G+ IV +LK +N +D G T LHLAA H ++V L ++
Sbjct: 79 SGWTPLHLAAYRGHLEIVEVLLKYGAD---VNAMDYQGYTPLHLAAEDGHLEIVEVLLKY 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
+ ++ A+++ + + ID D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 33/114 (28%), Positives = 63/114 (55%), Gaps = 6/114 (5%)
Query: 139 LQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGA 198
L+ I++++K +N D PLH AA G++++V+ LL+ + D G
Sbjct: 60 LEIIEVLLKYAAD----VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN-AMDYQGY 114
Query: 199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
TPLHLAAE+G L+++++L+ KY + +D ++ ++ +GN ++ + K
Sbjct: 115 TPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA G IV ++KY VN D +G TPLH H +
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAM-------------DYQGYTPLHLAAEDGHLEI 128
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+ K A + +K +T I+ID D+A
Sbjct: 129 VEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 61.2 bits (147), Expect = 1e-09, Method: Composition-based stats.
Identities = 47/147 (31%), Positives = 79/147 (53%), Gaps = 7/147 (4%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQL-AYKRDCNGATPL 201
D V+IL N +N D PLH AA G++++V+ LL+ + AY D G+TPL
Sbjct: 27 DDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY--DTLGSTPL 84
Query: 202 HLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLIN 261
HLAA G L+++++L+ D + +D++ + LH+AA G+ IV +LK +N
Sbjct: 85 HLAAHFGHLEIVEVLLKNGAD-VNAKDDNGITPLHLAANRGHLEIVEVLLKYGAD---VN 140
Query: 262 LIDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T+ ++ + D+ L +
Sbjct: 141 AQDKFGKTAFDISINNGNEDLAEILQK 167
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/144 (30%), Positives = 75/144 (52%), Gaps = 6/144 (4%)
Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
R+L A+ D G TPLHLAA G L+++++L+ D + D + LH+AA
Sbjct: 31 RILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGAD-VNAYDTLGSTPLHLAAH 89
Query: 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS 300
G+ IV +LK+ +N D NG T LHLAA H ++V L ++ + ++ A+++
Sbjct: 90 FGHLEIVEVLLKNGAD---VNAKDDNGITPLHLAANRGHLEIVEVLLKYGA-DVNAQDKF 145
Query: 301 ARNNTTLEIDEMTRADVTEVQKHL 324
+ + I+ D+ E+ + L
Sbjct: 146 GKTAFDISINNGNE-DLAEILQKL 168
Score = 35.4 bits (80), Expect = 0.084, Method: Composition-based stats.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
+ TPLH+AA G IV ++K VN +D G TPLH + H
Sbjct: 79 LGSTPLHLAAHFGHLEIVEVLLKNGADVNA-------------KDDNGITPLHLAANRGH 125
Query: 61 KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
++ +L+ K A + +K +T I+I+ D+A
Sbjct: 126 LEIVEVLL-KYGADVNAQDKFGKTAFDISINNGNEDLA 162
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 47/146 (32%), Positives = 75/146 (51%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA SG++++V+ LL+ + D G TPLH
Sbjct: 27 DDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVD-ASDVFGYTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ D + D+ + LH+AAK G IV +LK +N
Sbjct: 86 LAAYWGHLEIVEVLLKNGAD-VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T+ ++ + D+ L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 83/155 (53%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D G TPLHLAA +G L+++++L+ D ++ D
Sbjct: 21 AARAGQDDEV-RILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDV 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ LH+AA G+ IV +LK+ +N +D +G T LHLAA + ++V L +H
Sbjct: 79 FGYTPLHLAAYWGHLEIVEVLLKNGAD---VNAMDSDGMTPLHLAAKWGYLEIVEVLLKH 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
+ ++ A+++ + + ID D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA G IV ++K+ V+ + D+ G TPLH H +
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDAS-------------DVFGYTPLHLAAYWGHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIA 89
+ +L+ K+ A + ++ TPL +A
Sbjct: 96 VEVLL-KNGADVNAMDSDGMTPLHLA 120
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D +G TPLHLAA G L+++++L+ D I D
Sbjct: 21 AARAGQDDEV-RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ LH+AA G+ IV +LK +N +D G+T LHLAA+ H ++V L +H
Sbjct: 79 XGSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
+ ++ A+++ + + ID D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA G++++V+ LL+ + D G+TPLH
Sbjct: 27 DDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIXGSTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ D + D + LH+AA G+ IV +LK +N
Sbjct: 86 LAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T+ ++ + D+ L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA IG IV ++K+ VN D G+TPLH H +
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADVNAV-------------DTWGDTPLHLAAIMGHLEI 128
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+ K A + +K +T I+ID D+A
Sbjct: 129 VEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 37.4 bits (85), Expect = 0.019, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA G IV ++K+ VN DI G+TPLH H +
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAI-------------DIXGSTPLHLAALIGHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIA 89
+ +L+ K A + ++ TPL +A
Sbjct: 96 VEVLL-KHGADVNAVDTWGDTPLHLA 120
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 60.5 bits (145), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 6/144 (4%)
Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
R+L A+ D +G TPLHLAA NG L+++++L+ D + D++ + L +AA
Sbjct: 31 RILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAAL 89
Query: 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRS 300
G+ IV +LK+ +N D G+T LHLAAM H ++V L ++ + ++ A+++
Sbjct: 90 FGHLEIVEVLLKNGAD---VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGA-DVNAQDKF 145
Query: 301 ARNNTTLEIDEMTRADVTEVQKHL 324
+ + ID D+ E+ + L
Sbjct: 146 GKTAFDISIDNGNE-DLAEILQKL 168
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 44/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA +G++++V+ LL+ + D G TPL
Sbjct: 27 DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLR 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ D + D + LH+AA G+ IV +LK+ +N
Sbjct: 86 LAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T+ ++ + D+ L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 21/115 (18%)
Query: 4 TPLHIAARIGDHAIVSEIMKY---VPAVNQAGSASV-LETLFG----------------M 43
TPLH+AA G IV ++K V AV+ AG + L LFG
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108
Query: 44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
D+EG+TPLH H ++ +L+ K+ A + +K +T I+ID D+A
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 60.1 bits (144), Expect = 3e-09, Method: Composition-based stats.
Identities = 50/155 (32%), Positives = 82/155 (52%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D +G TPLHLAA G L+++++L+ D I D
Sbjct: 21 AARAGQDDEV-RILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI-DI 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ LH+AA G+ IV +LK +N +D G+T LHLAA+ H ++V L +H
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGAD---VNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
+ ++ A+++ + + ID D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDN-GNEDLAEILQKL 168
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA G++++V+ LL+ + D G+TPLH
Sbjct: 27 DDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN-AIDIMGSTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ D + D + LH+AA G+ IV +LK +N
Sbjct: 86 LAALIGHLEIVEVLLKHGAD-VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T+ ++ + D+ L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 31/98 (31%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
M TPLH+AA IG IV ++K+ VN D G+TPLH H
Sbjct: 79 MGSTPLHLAALIGHLEIVEVLLKHGADVNAV-------------DTWGDTPLHLAAIMGH 125
Query: 61 KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
++ +L+ K A + +K +T I+ID D+A
Sbjct: 126 LEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 14/86 (16%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA G IV ++K+ VN DI G+TPLH H +
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAI-------------DIMGSTPLHLAALIGHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIA 89
+ +L+ K A + ++ TPL +A
Sbjct: 96 VEVLL-KHGADVNAVDTWGDTPLHLA 120
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 59.3 bits (142), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/146 (31%), Positives = 76/146 (52%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA G++++V+ LL+ + D G TPLH
Sbjct: 27 DDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN-ADDSLGVTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA+ G L+V+++L+ D + D++ + LH+AA G+ IV +LK +N
Sbjct: 86 LAADRGHLEVVEVLLKNGAD-VNANDHNGFTPLHLAANIGHLEIVEVLLKHGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T+ ++ + D+ L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 51/159 (32%), Positives = 82/159 (51%), Gaps = 15/159 (9%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D G TPLHLAA G L+++++L+ D N
Sbjct: 21 AARAGQDDEV-RILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADV-----N 74
Query: 230 SDRSI----LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFT 285
+D S+ LH+AA G+ +V +LK+ +N D NG T LHLAA H ++V
Sbjct: 75 ADDSLGVTPLHLAADRGHLEVVEVLLKNGAD---VNANDHNGFTPLHLAANIGHLEIVEV 131
Query: 286 LSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
L +H + ++ A+++ + + ID D+ E+ + L
Sbjct: 132 LLKHGA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA G IV ++K VN S V TPLH + H V
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGV-------------TPLHLAADRGHLEV 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDV 92
+ +L++ + ++ + + TPL +A ++
Sbjct: 96 VEVLLKNGADVNANDHNGF-TPLHLAANI 123
Score = 28.5 bits (62), Expect = 9.1, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTK 58
TPLH+AA IG IV ++K+ VN +T F + GN L ++ K
Sbjct: 115 TPLHLAANIGHLEIVEVLLKHGADVNAQDKFG--KTAFDISIDNGNEDLAEILQK 167
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 48/155 (30%), Positives = 81/155 (52%), Gaps = 7/155 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D +G TPLHLAA G L+++++L+ D + D
Sbjct: 21 AARAGQDDEV-RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGAD-VNAADK 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
+ LH+AA +G+ IV +LK+ +N D G T LHLAA H ++V L ++
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGAD---VNATDTYGFTPLHLAADAGHLEIVEVLLKY 135
Query: 290 KSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHL 324
+ ++ A+++ + + ID D+ E+ + L
Sbjct: 136 GA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQKL 168
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 45/146 (30%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D + PLH AA G++++V+ LL+ + D G TPLH
Sbjct: 27 DDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN-AADKMGDTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
LAA G L+++++L+ D + D + LH+AA G+ IV +LK +N
Sbjct: 86 LAALYGHLEIVEVLLKNGAD-VNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD---VNA 141
Query: 263 IDRNGNTSLHLAAMGLHSDVVFTLSR 288
D+ G T+ ++ + D+ L +
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 37.0 bits (84), Expect = 0.026, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
+TPLH+AA G IV ++K+ VN A D G+TPLH H
Sbjct: 48 KTPLHLAAIKGHLEIVEVLLKHGADVNAA-------------DKMGDTPLHLAALYGHLE 94
Query: 63 VIRILVEKDSAPSSYINKAYQTPLSIAID 91
++ +L+ K+ A + + TPL +A D
Sbjct: 95 IVEVLL-KNGADVNATDTYGFTPLHLAAD 122
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
M +TPLH+AA G IV ++K VN D G TPLH H
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGADVNAT-------------DTYGFTPLHLAADAGH 125
Query: 61 KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
++ +L+ K A + +K +T I+ID D+A
Sbjct: 126 LEIVEVLL-KYGADVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 36/172 (20%), Positives = 66/172 (38%), Gaps = 50/172 (29%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
D G TPLH K H ++ +L+ K A + +K TPL +A
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLL-KHGADVNAADKMGDTPLHLA--------------- 87
Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
L+ +++++K N +N D +
Sbjct: 88 -----------------------------ALYGHLEIVEVLLK----NGADVNATDTYGF 114
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
PLH AA +G++++V+ LL+ + +D G T ++ +NG + ++L
Sbjct: 115 TPLHLAADAGHLEIVEVLLKYGADVN-AQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 55.5 bits (132), Expect = 7e-08, Method: Composition-based stats.
Identities = 32/85 (37%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE 225
PLH AA +G+ + V++LL + R +G TPLHLAA+NG +++KLL+ K D +
Sbjct: 12 PLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VN 69
Query: 226 IRDNSDRSILHVAAKHGNWNIVSFI 250
R + H+A K+G+ IV +
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 52.4 bits (124), Expect = 7e-07, Method: Composition-based stats.
Identities = 36/102 (35%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255
+G TPLH AA+NG + +K L++K D + R + LH+AAK+G+ IV +L
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 256 MENLINLIDRNGNTSLHLAAMGLHSDVVFTL-SRHKSVNIRA 296
+N ++GNT HLA H ++V L ++ VN R+
Sbjct: 67 D---VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 147 KILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAE 206
K+L D +N PLH AA +G+ ++V+ LL + R +G TP HLA +
Sbjct: 27 KLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHLAKK 84
Query: 207 NGELKVLKLLINKYPD 222
NG +++KLL K D
Sbjct: 85 NGHHEIVKLLDAKGAD 100
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 13/67 (19%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH AA+ G V +++ VN R +GNTPLH H +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNA-------------RSKDGNTPLHLAAKNGHAEI 57
Query: 64 IRILVEK 70
+++L+ K
Sbjct: 58 VKLLLAK 64
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 13/67 (19%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA+ G IV ++ VN R +GNTP H H +
Sbjct: 44 TPLHLAAKNGHAEIVKLLLAKGADVNA-------------RSKDGNTPEHLAKKNGHHEI 90
Query: 64 IRILVEK 70
+++L K
Sbjct: 91 VKLLDAK 97
Score = 29.6 bits (65), Expect = 4.2, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 40 LFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIA 89
++G +D GNTPLHN H ++ L+ K A + +K TPL +A
Sbjct: 3 MWGSKD--GNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLA 49
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG--ELKVL 213
+N D +PLH AA++G ++V+ LL Q+ NG TPLH AA E+ V+
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVM 124
Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273
L PDA +D+ + + +H AA GN ++ +L + N+ D GNT LHL
Sbjct: 125 LLEGGANPDA---KDHYEATAMHRAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHL 178
Query: 274 A 274
A
Sbjct: 179 A 179
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
D + T LH + H ++ L++ P + + A +PL IA ++I ++ K
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
++ +NA + T LH+ + ++++ +M+ G N D D ++
Sbjct: 96 GAQ-VNAVN-QNGCTPLHYAASKNRHEIA----------VMLLEGGANPD---AKDHYEA 140
Query: 165 NPLHYAAASGNVQMVQRLL--EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
+H AAA GN++M+ LL +AS + +D G TPLHLA + ++ KLL+++
Sbjct: 141 TAMHRAAAKGNLKMIHILLYYKASTNI---QDTEGNTPLHLACDEERVEEAKLLVSQGA- 196
Query: 223 AIEIRDNSDRSILHVA 238
+I I + +++ L VA
Sbjct: 197 SIYIENKEEKTPLQVA 212
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
+ T +H AA G+ ++ ++ Y + N ++D EGNTPLH ++
Sbjct: 139 EATAMHRAAAKGNLKMIHILLYYKASTN-------------IQDTEGNTPLHLACDEERV 185
Query: 62 RVIRILVEKDSAPSSYI-NKAYQTPLSIA 89
++LV + + S YI NK +TPL +A
Sbjct: 186 EEAKLLVSQGA--SIYIENKEEKTPLQVA 212
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 19/76 (25%)
Query: 4 TPLHIAARIGDHAIVSEIMK---YVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
+PLHIAA G IV ++ V AVNQ G TPLH +K
Sbjct: 75 SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC----------------TPLHYAASKNR 118
Query: 61 KRVIRILVEKDSAPSS 76
+ +L+E + P +
Sbjct: 119 HEIAVMLLEGGANPDA 134
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 9/121 (7%)
Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG--ELKVL 213
+N D +PLH AA++G ++V+ LL Q+ NG TPLH AA E+ V+
Sbjct: 67 VNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQ-NGCTPLHYAASKNRHEIAVM 125
Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273
L PDA +D+ + + +H AA GN ++ +L + N+ D GNT LHL
Sbjct: 126 LLEGGANPDA---KDHYEATAMHRAAAKGNLKMIHILLY---YKASTNIQDTEGNTPLHL 179
Query: 274 A 274
A
Sbjct: 180 A 180
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 96/196 (48%), Gaps = 22/196 (11%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
D + T LH + H ++ L++ P + + A +PL IA ++I ++ K
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
++ +NA + T LH+ + ++++ +M+ G N D D ++
Sbjct: 97 GAQ-VNAVN-QNGCTPLHYAASKNRHEIA----------VMLLEGGANPDAK---DHYEA 141
Query: 165 NPLHYAAASGNVQMVQRLL--EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
+H AAA GN++M+ LL +AS + +D G TPLHLA + ++ KLL+++
Sbjct: 142 TAMHRAAAKGNLKMIHILLYYKASTNI---QDTEGNTPLHLACDEERVEEAKLLVSQGA- 197
Query: 223 AIEIRDNSDRSILHVA 238
+I I + +++ L VA
Sbjct: 198 SIYIENKEEKTPLQVA 213
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 16/89 (17%)
Query: 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
+ T +H AA G+ ++ ++ Y + N ++D EGNTPLH ++
Sbjct: 140 EATAMHRAAAKGNLKMIHILLYYKASTN-------------IQDTEGNTPLHLACDEERV 186
Query: 62 RVIRILVEKDSAPSSYI-NKAYQTPLSIA 89
++LV + + S YI NK +TPL +A
Sbjct: 187 EEAKLLVSQGA--SIYIENKEEKTPLQVA 213
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 19/76 (25%)
Query: 4 TPLHIAARIGDHAIVSEIMK---YVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
+PLHIAA G IV ++ V AVNQ G TPLH +K
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQVNAVNQNGC----------------TPLHYAASKNR 119
Query: 61 KRVIRILVEKDSAPSS 76
+ +L+E + P +
Sbjct: 120 HEIAVMLLEGGANPDA 135
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 98/222 (44%), Gaps = 20/222 (9%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
D + NTPL V + +R++ L + + P+ Y NK+ ++ L A R D +
Sbjct: 163 DCDENTPLXLAVLARRRRLVAYLXKAGADPTIY-NKSERSALHQAAANR--DFGXXVY-- 217
Query: 105 SSESLNATRLPDEL--------TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLI 156
LN+T+L ++ T L + D S + L V G +
Sbjct: 218 ---XLNSTKLKGDIEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS 274
Query: 157 NRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
+ + R LHYAA N +V+ L+ K+D +G TP+ LAA+ G ++V+ L
Sbjct: 275 EK--YKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYL 332
Query: 217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVS-FILKSPEME 257
I + ++E D +D + +A + + NIV F PE E
Sbjct: 333 IQQGA-SVEAVDATDHTARQLAQANNHHNIVDIFDRCRPERE 373
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 70/141 (49%), Gaps = 9/141 (6%)
Query: 153 KDLINRLD-WHQRNPLHYAAASGNVQMVQRLL--EASKQLAYK-----RDCNGATPLHLA 204
++ +N +D H R LH+ A++ + + + L+ EA + +A DC+ TPL LA
Sbjct: 114 RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAXDCDENTPLXLA 173
Query: 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLID 264
+++ L D I + S+RS LH AA + ++ + L S +++ I +D
Sbjct: 174 VLARRRRLVAYLXKAGADPT-IYNKSERSALHQAAANRDFGXXVYXLNSTKLKGDIEELD 232
Query: 265 RNGNTSLHLAAMGLHSDVVFT 285
RNG T+L + A D V +
Sbjct: 233 RNGXTALXIVAHNEGRDQVAS 253
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG--ELKVL 213
+N D +PLH AA++G ++V+ LL + NG TPLH AA E+ V+
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVM 124
Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273
L PDA +D+ D + +H AA GN +V +L + N+ D GNT LHL
Sbjct: 125 LLEGGANPDA---KDHYDATAMHRAAAKGNLKMVHILLF---YKASTNIQDTEGNTPLHL 178
Query: 274 A 274
A
Sbjct: 179 A 179
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 22/196 (11%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
D + T LH + H ++ L++ P + + A +PL IA ++I ++ K
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
+ +NA + T LH+ + ++++ +M+ G N D + D
Sbjct: 96 GAH-VNAVN-QNGCTPLHYAASKNRHEIA----------VMLLEGGANPDAKDHYD---A 140
Query: 165 NPLHYAAASGNVQMVQRLL--EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
+H AAA GN++MV LL +AS + +D G TPLHLA + ++ K L+ +
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNI---QDTEGNTPLHLACDEERVEEAKFLVTQGA- 196
Query: 223 AIEIRDNSDRSILHVA 238
+I I + +++ L VA
Sbjct: 197 SIYIENKEEKTPLQVA 212
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
D T +H AA G+ +V ++ Y + N ++D EGNTPLH ++
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTN-------------IQDTEGNTPLHLACDEERV 185
Query: 62 RVIRILVEKDSAPSSYI-NKAYQTPLSIA 89
+ LV + + S YI NK +TPL +A
Sbjct: 186 EEAKFLVTQGA--SIYIENKEEKTPLQVA 212
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 19/76 (25%)
Query: 4 TPLHIAARIGDHAIVSEIM---KYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
+PLHIAA G IV ++ +V AVNQ G TPLH +K
Sbjct: 75 SPLHIAASAGRDEIVKALLVKGAHVNAVNQNGC----------------TPLHYAASKNR 118
Query: 61 KRVIRILVEKDSAPSS 76
+ +L+E + P +
Sbjct: 119 HEIAVMLLEGGANPDA 134
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 61/121 (50%), Gaps = 9/121 (7%)
Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG--ELKVL 213
+N D +PLH AA++G ++V+ LL + NG TPLH AA E+ V+
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ-NGCTPLHYAASKNRHEIAVM 124
Query: 214 KLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273
L PDA +D+ D + +H AA GN +V +L + N+ D GNT LHL
Sbjct: 125 LLEGGANPDA---KDHYDATAMHRAAAKGNLKMVHILLF---YKASTNIQDTEGNTPLHL 178
Query: 274 A 274
A
Sbjct: 179 A 179
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 22/196 (11%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
D + T LH + H ++ L++ P + + A +PL IA ++I ++ K
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQL-GVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 105 SSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164
+ +NA + T LH+ + ++++ +M+ G N D + D
Sbjct: 96 GAH-VNAVN-QNGCTPLHYAASKNRHEIA----------VMLLEGGANPDAKDHYD---A 140
Query: 165 NPLHYAAASGNVQMVQRLL--EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
+H AAA GN++MV LL +AS + +D G TPLHLA + ++ K L+ +
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNI---QDTEGNTPLHLACDEERVEEAKFLVTQGA- 196
Query: 223 AIEIRDNSDRSILHVA 238
+I I + +++ L VA
Sbjct: 197 SIYIENKEEKTPLQVA 212
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 16/89 (17%)
Query: 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
D T +H AA G+ +V ++ Y + N ++D EGNTPLH ++
Sbjct: 139 DATAMHRAAAKGNLKMVHILLFYKASTN-------------IQDTEGNTPLHLACDEERV 185
Query: 62 RVIRILVEKDSAPSSYI-NKAYQTPLSIA 89
+ LV + + S YI NK +TPL +A
Sbjct: 186 EEAKFLVTQGA--SIYIENKEEKTPLQVA 212
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 19/76 (25%)
Query: 4 TPLHIAARIGDHAIVSEIM---KYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
+PLHIAA G IV ++ +V AVNQ G TPLH +K
Sbjct: 75 SPLHIAASAGXDEIVKALLVKGAHVNAVNQNGC----------------TPLHYAASKNR 118
Query: 61 KRVIRILVEKDSAPSS 76
+ +L+E + P +
Sbjct: 119 HEIAVMLLEGGANPDA 134
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N +D PLH AA G++++V+ LL+ + RD G TPLH
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ARDIWGRTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
LAA G L+++++L+ +Y + +D ++ ++ +GN ++ + K
Sbjct: 86 LAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
R+L A+ D G TPLHLAA+ G L+++++L+ D + RD R+ LH+AA
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNARDIWGRTPLHLAAT 89
Query: 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
G+ IV +L E +N D+ G T+ ++ + D+ L +
Sbjct: 90 VGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA+ G IV ++K+ VN RDI G TPLH T H +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNA-------------RDIWGRTPLHLAATVGHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+E A + +K +T I+ID D+A
Sbjct: 96 VEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN 218
++ Q PLH+AA V +V+ LL+ + + +D G PLH A G +V +LL+
Sbjct: 40 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 97
Query: 219 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLIDRNGNTSLHLAA 275
K+ + + D + LH AA G + I +L+ P +N R+GNT L L
Sbjct: 98 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 151
Query: 276 MG 277
G
Sbjct: 152 DG 153
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
+ ++L + ++N D + PLH AAA G ++ + LL+ K++ +G TPL L
Sbjct: 92 VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDL- 149
Query: 205 AENGELKVLKLL 216
++G+ + LL
Sbjct: 150 VKDGDTDIQDLL 161
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN 218
++ Q PLH+AA V +V+ LL+ + + +D G PLH A G +V +LL+
Sbjct: 38 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 95
Query: 219 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLIDRNGNTSLHLAA 275
K+ + + D + LH AA G + I +L+ P +N R+GNT L L
Sbjct: 96 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 149
Query: 276 MG 277
G
Sbjct: 150 DG 151
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
+ ++L + ++N D + PLH AAA G ++ + LL+ K++ +G TPL L
Sbjct: 90 VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDL- 147
Query: 205 AENGELKVLKLL 216
++G+ + LL
Sbjct: 148 VKDGDTDIQDLL 159
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 11/122 (9%)
Query: 159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLIN 218
++ Q PLH+AA V +V+ LL+ + + +D G PLH A G +V +LL+
Sbjct: 42 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNACSYGHYEVAELLV- 99
Query: 219 KYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK---SPEMENLINLIDRNGNTSLHLAA 275
K+ + + D + LH AA G + I +L+ P +N R+GNT L L
Sbjct: 100 KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKN------RDGNTPLDLVK 153
Query: 276 MG 277
G
Sbjct: 154 DG 155
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204
+ ++L + ++N D + PLH AAA G ++ + LL+ K++ +G TPL L
Sbjct: 94 VAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDL- 151
Query: 205 AENGELKVLKLL 216
++G+ + LL
Sbjct: 152 VKDGDTDIQDLL 163
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 29/241 (12%)
Query: 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
M PLH A + V E++ P +L +D +G PLH V+ +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 61 KRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE- 117
+ L+ K + Y + + TP IA V ++ + D+ + + ++ ++
Sbjct: 49 HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG 107
Query: 118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ 177
+T LH V ++ +++S QFL V+I KD N++ PLH AA+ G+++
Sbjct: 108 VTCLHLAVGKKWFEVS---QFLIENGASVRI----KDKFNQI------PLHRAASVGSLK 154
Query: 178 MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237
+++ L K +D G TPL A G LL+ KY ++ DN V
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Query: 238 A 238
A
Sbjct: 215 A 215
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL 259
PLH A E ++ L++ P + +D R LH + I SF+L E NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 260 INLIDRNGNTSLHLAAMGLHSDVVFTL 286
+ D +G T H+A + +VV +L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSL 91
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 29/241 (12%)
Query: 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
M PLH A + V E++ P +L +D +G PLH V+ +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 61 KRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE- 117
+ L+ K + Y + + TP IA V ++ + D+ + + ++ ++
Sbjct: 49 HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG 107
Query: 118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ 177
+T LH V ++ +++S QFL V+I KD N++ PLH AA+ G+++
Sbjct: 108 VTCLHLAVGKKWFEVS---QFLIENGASVRI----KDKFNQI------PLHRAASVGSLK 154
Query: 178 MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237
+++ L K +D G TPL A G LL+ KY ++ DN V
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Query: 238 A 238
A
Sbjct: 215 A 215
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL 259
PLH A E ++ L++ P + +D R LH + I SF+L E NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 260 INLIDRNGNTSLHLAAMGLHSDVVFTL 286
+ D +G T H+A + +VV +L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSL 91
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 103/241 (42%), Gaps = 29/241 (12%)
Query: 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
M PLH A + V E++ P +L +D +G PLH V+ +
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKP------------SLLLQKDQDGRIPLHWSVSFQA 48
Query: 61 KRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE- 117
+ L+ K + Y + + TP IA V ++ + D+ + + ++ ++
Sbjct: 49 HEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKP-DLNKITNQG 107
Query: 118 LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ 177
+T LH V ++ +++S QFL V+I KD N++ PLH AA+ G+++
Sbjct: 108 VTCLHLAVGKKWFEVS---QFLIENGASVRI----KDKFNQI------PLHRAASVGSLK 154
Query: 178 MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237
+++ L K +D G TPL A G LL+ KY ++ DN V
Sbjct: 155 LIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Query: 238 A 238
A
Sbjct: 215 A 215
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL 259
PLH A E ++ L++ P + +D R LH + I SF+L E NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 260 INLIDRNGNTSLHLAAMGLHSDVVFTL 286
+ D +G T H+A + +VV +L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSL 91
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 52.0 bits (123), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N LD PLH AA G++++V+ LL+ + D G TPLH
Sbjct: 27 DDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
LAA G L+++++L+ D + +D ++ ++ +GN ++ + K
Sbjct: 86 LAAIRGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 38/119 (31%), Positives = 62/119 (52%), Gaps = 5/119 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D +G TPLHLAA+ G L+++++L+ KY + DN
Sbjct: 21 AARAGQDDEV-RILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDN 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
+ LH+AA G+ IV +LK +N D+ G T+ ++ + D+ L +
Sbjct: 79 FGITPLHLAAIRGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA++G IV ++KY VN E FG+ TPLH + H +
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNA-------EDNFGI------TPLHLAAIRGHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+ K A + +K +T I+ID D+A
Sbjct: 96 VEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 204 AAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLI 263
AA G+ +++L+ D + D + LH+AA+ G+ IV +LK +N
Sbjct: 21 AARAGQDDEVRILMANGAD-VNALDEDGLTPLHLAAQLGHLEIVEVLLKYGAD---VNAE 76
Query: 264 DRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKH 323
D G T LHLAA+ H ++V L +H + ++ A+++ + + ID D+ E+ +
Sbjct: 77 DNFGITPLHLAAIRGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQK 134
Query: 324 L 324
L
Sbjct: 135 L 135
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N +D PLH AA G++++V+ LL+ + D G TPLH
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDSWGRTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
LAA G L+++++L+ +Y + +D ++ ++ +GN ++ + K
Sbjct: 86 LAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
R+L A+ D G TPLHLAA+ G L+++++L+ D + D+ R+ LH+AA
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDSWGRTPLHLAAT 89
Query: 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
G+ IV +L E +N D+ G T+ ++ + D+ L +
Sbjct: 90 VGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 45/95 (47%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA+ G IV ++K+ VN + D G TPLH T H +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNAS-------------DSWGRTPLHLAATVGHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+E A + +K +T I+ID D+A
Sbjct: 96 VEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 51.2 bits (121), Expect = 1e-06, Method: Composition-based stats.
Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N +D PLH AA G++++V+ LL+ + D G TPLH
Sbjct: 27 DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN-ASDIWGRTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
LAA G L+++++L+ +Y + +D ++ ++ +GN ++ + K
Sbjct: 86 LAATVGHLEIVEVLL-EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 4/108 (3%)
Query: 181 RLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
R+L A+ D G TPLHLAA+ G L+++++L+ D + D R+ LH+AA
Sbjct: 31 RILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGAD-VNASDIWGRTPLHLAAT 89
Query: 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
G+ IV +L E +N D+ G T+ ++ + D+ L +
Sbjct: 90 VGHLEIVEVLL---EYGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA+ G IV ++K+ VN + DI G TPLH T H +
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNAS-------------DIWGRTPLHLAATVGHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+E A + +K +T I+ID D+A
Sbjct: 96 VEVLLEY-GADVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI--NKYPD 222
+PLH AA G ++ LL+ A R+ + A PLHLA + G +V+K L+ N P+
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN 146
Query: 223 AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDV 282
+D S + L A G+ +V+ +L+ IN + GNT+LH A + H V
Sbjct: 147 K---KDLSGNTPLIYACSGGHHELVALLLQHGAS---INASNNKGNTALHEAVIEKHVFV 200
Query: 283 VFTLSRHKSVNIRAKNRSAR 302
V L H +++ N+ R
Sbjct: 201 VELLLLH-GASVQVLNKRQR 219
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 62/136 (45%), Gaps = 14/136 (10%)
Query: 160 DWHQRNPLHYAAASGNVQMVQRLLEASKQ-LAYKRDC-NGATP--LHLAAENGELKVLKL 215
D+ + L A A G+++MV+ LLE +++ L D + A P H + + +
Sbjct: 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQK 67
Query: 216 LINKYPDA---IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTS-- 270
+ K P + + + S LHVAA HG +++ +LK + N RN + +
Sbjct: 68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLK-----HGANAGARNADQAVP 122
Query: 271 LHLAAMGLHSDVVFTL 286
LHLA H VV L
Sbjct: 123 LHLACQQGHFQVVKCL 138
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPL A G H +V+ ++++ ++N + + +GNT LH V +KH V
Sbjct: 154 TPLIYACSGGHHELVALLLQHGASINASNN-------------KGNTALHEAVIEKHVFV 200
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIA 89
+ +L+ A +NK +T + A
Sbjct: 201 VELLL-LHGASVQVLNKRQRTAVDCA 225
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 4/101 (3%)
Query: 174 GNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRS 233
GN V+ L+ ++ + D +G +PLH A G V+++LI + I + + D +
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDDT 69
Query: 234 ILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA 274
LH+AA HG+ +IV +L + + IN ++ +GN LH A
Sbjct: 70 PLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYA 107
Score = 37.0 bits (84), Expect = 0.031, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 14/78 (17%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCN-----GAT 199
M+ + G +++NR D PLH AA+ G+ +VQ+LL+ YK D N G
Sbjct: 52 MLIMRGARINVMNRGD---DTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNV 102
Query: 200 PLHLAAENGELKVLKLLI 217
PLH A G+ +V + L+
Sbjct: 103 PLHYACFWGQDQVAEDLV 120
Score = 35.4 bits (80), Expect = 0.078, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 208 GELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNG 267
G ++L ++ + + D+ S LH A + G +V ++ IN+++R
Sbjct: 11 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---INVMNRGD 67
Query: 268 NTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298
+T LHLAA H D+V L ++K+ +I A N
Sbjct: 68 DTPLHLAASHGHRDIVQKLLQYKA-DINAVN 97
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
Query: 151 TNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGEL 210
T DL N+ D H +PLH+A G +V+ L+ ++ + TPLHLAA +G
Sbjct: 23 TENDL-NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD-TPLHLAASHGHR 80
Query: 211 KVLKLLINKYPD 222
+++ L+ D
Sbjct: 81 DIVQKLLQYKAD 92
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
D+TPLH+AA G IV ++++Y +N GN PLH
Sbjct: 67 DDTPLHLAASHGHRDIVQKLLQYKADINAVNE-------------HGNVPLHYACFWGQD 113
Query: 62 RVIRILVEKDSAPSSYINKAYQTPLSIA 89
+V LV + A S NK + P+ A
Sbjct: 114 QVAEDLV-ANGALVSICNKYGEMPVDKA 140
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA ++++V+ LL+ + D +G+TPLH
Sbjct: 27 DDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN-AHDNDGSTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
LAA G L+++++L+ D + +D ++ ++ +GN ++ + K
Sbjct: 86 LAALFGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 6/121 (4%)
Query: 204 AAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLI 263
AA G+ +++L+ D + D + LH+AA + + IV +LK +N
Sbjct: 21 AARAGQDDEVRILMANGAD-VNANDRKGNTPLHLAADYDHLEIVEVLLKHGAD---VNAH 76
Query: 264 DRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKH 323
D +G+T LHLAA+ H ++V L +H + ++ A+++ + + ID D+ E+ +
Sbjct: 77 DNDGSTPLHLAALFGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQK 134
Query: 324 L 324
L
Sbjct: 135 L 135
Score = 33.9 bits (76), Expect = 0.24, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA IV ++K+ VN D +G+TPLH H +
Sbjct: 49 TPLHLAADYDHLEIVEVLLKHGADVNA-------------HDNDGSTPLHLAALFGHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+ K A + +K +T I+ID D+A
Sbjct: 96 VEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 4/104 (3%)
Query: 173 SGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDR 232
GN V+ L+ ++ + D +G +PLH A G V+++LI + I + + D
Sbjct: 15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGA-RINVMNRGDD 73
Query: 233 SILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276
+ LH+AA HG+ +IV +L + + IN ++ +GN LH A
Sbjct: 74 TPLHLAASHGHRDIVQKLL---QYKADINAVNEHGNVPLHYACF 114
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 14/78 (17%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCN-----GAT 199
M+ + G +++NR D PLH AA+ G+ +VQ+LL+ YK D N G
Sbjct: 57 MLIMRGARINVMNRGD---DTPLHLAASHGHRDIVQKLLQ------YKADINAVNEHGNV 107
Query: 200 PLHLAAENGELKVLKLLI 217
PLH A G+ +V + L+
Sbjct: 108 PLHYACFWGQDQVAEDLV 125
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK 61
D+TPLH+AA G IV ++++Y +N GN PLH
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAVNE-------------HGNVPLHYACFWGQD 118
Query: 62 RVIRILVEKDSAPSSYINKAYQTPLSIA 89
+V LV + A S NK + P+ A
Sbjct: 119 QVAEDLV-ANGALVSICNKYGEMPVDKA 145
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 208 GELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNG 267
G ++L ++ + + D+ S LH A + G +V ++ IN+++R
Sbjct: 16 GNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---INVMNRGD 72
Query: 268 NTSLHLAAMGLHSDVVFTLSRHKS 291
+T LHLAA H D+V L ++K+
Sbjct: 73 DTPLHLAASHGHRDIVQKLLQYKA 96
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 149 LGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG 208
L ++ +N+ D H +PLH+A G +V+ L+ ++ + TPLHLAA +G
Sbjct: 25 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGD-DTPLHLAASHG 83
Query: 209 ELKVLKLLINKYPD 222
+++ L+ D
Sbjct: 84 HRDIVQKLLQYKAD 97
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI 226
LH A+ G++ V+ LL+ K D G TPLH A +G LKV++LL+ ++ +
Sbjct: 14 LHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLL-QHKALVNT 71
Query: 227 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLI 263
+ S LH AAK+G+ +IV +L N +N+
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 145 MVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLL 183
+V++L +K L+N + +PLH AA +G+V +V+ LL
Sbjct: 58 VVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D+ PLH AA G++++V+ LL+ + + G TPLH
Sbjct: 27 DDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGN-TGRTPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
LAA L+++++L+ D + +D ++ ++ +GN ++ + K
Sbjct: 86 LAAWADHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 14/95 (14%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA +G IV ++K VN G+ G TPLH H +
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNT-------------GRTPLHLAAWADHLEI 95
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ +L+ K A + +K +T I+ID D+A
Sbjct: 96 VEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 129
Score = 37.7 bits (86), Expect = 0.014, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 6/121 (4%)
Query: 204 AAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLI 263
AA G+ +++L D + D + LH+AA G+ IV +LK+ +N
Sbjct: 21 AARAGQDDEVRILTANGAD-VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGAD---VNAT 76
Query: 264 DRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKH 323
G T LHLAA H ++V L +H + ++ A+++ + + ID D+ E+ +
Sbjct: 77 GNTGRTPLHLAAWADHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQK 134
Query: 324 L 324
L
Sbjct: 135 L 135
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V+ L+ +A K D NG+TPLHLAA NG L+V+KLL+ D + +D
Sbjct: 31 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD-VXAQDK 88
Query: 230 SDRSILHVAAKHGNWNIVSFI 250
++ ++ +GN ++ +
Sbjct: 89 FGKTAFDISIDNGNEDLAEIL 109
Score = 35.4 bits (80), Expect = 0.075, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N + D + PLH AA +G++++V+ LLEA + +D G T
Sbjct: 37 DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAFD 95
Query: 203 LAAENGELKVLKLL 216
++ +NG + ++L
Sbjct: 96 ISIDNGNEDLAEIL 109
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 264 DRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEID 310
D+NG+T LHLAA H +VV L ++ A+++ + + ID
Sbjct: 54 DKNGSTPLHLAARNGHLEVV-KLLLEAGADVXAQDKFGKTAFDISID 99
Score = 29.3 bits (64), Expect = 5.3, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+D G+TPLH H V+++L+E A +K +T I+ID D+A
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLA 106
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V+ L+ +A K D NG+TPLHLAA NG L+V+KLL+ D + +D
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD-VNAQDK 70
Query: 230 SDRSILHVAAKHGNWNIVSFI 250
++ ++ +GN ++ +
Sbjct: 71 FGKTAFDISIDNGNEDLAEIL 91
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N + D + PLH AA +G++++V+ LLEA + +D G T
Sbjct: 19 DDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN-AQDKFGKTAFD 77
Query: 203 LAAENGELKVLKLL 216
++ +NG + ++L
Sbjct: 78 ISIDNGNEDLAEIL 91
Score = 29.3 bits (64), Expect = 5.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+D G+TPLH H V+++L+E A + +K +T I+ID D+A
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDKFGKTAFDISIDNGNEDLA 88
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 264 DRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEID 310
D+NG+T LHLAA H +VV L ++ A+++ + + ID
Sbjct: 36 DKNGSTPLHLAARNGHLEVV-KLLLEAGADVNAQDKFGKTAFDISID 81
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 256
G T L LA +G + V+K L+ D + ++D+ + L A +HG+ I +L P
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSC 241
Query: 257 ENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIR 295
+ I+L DR+G+T+L +A S++ L + +NI+
Sbjct: 242 D--ISLTDRDGSTALMVALDAGQSEIASML--YSRMNIK 276
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 80/221 (36%), Gaps = 44/221 (19%)
Query: 30 QAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIA 89
+A SA +L+ + + D GNT LH V+ + V++ L++ N+A +P
Sbjct: 93 RAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSP---- 148
Query: 90 IDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKIL 149
+ L ++ D+ +Q + +I K
Sbjct: 149 ----------------------------IMLTALATLKTQDDIETVLQLFRLGNINAKA- 179
Query: 150 GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE 209
+ L A + G V +V+ LL + + D +G+T L A E+G
Sbjct: 180 ----------SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDD-DGSTALMCACEHGH 228
Query: 210 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 250
++ LL+ I + D + L VA G I S +
Sbjct: 229 KEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASML 269
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 45.8 bits (107), Expect = 6e-05, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH-LAAENGELKVLKLLINKYPDA 223
N L AAA G+++ + LL+ + + + G T L + N E+ LL PD
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGNPEIARRLLLRGANPD- 64
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
++D + +++H AA+ G + + +L E + +N+ D GN LHLAA H VV
Sbjct: 65 --LKDRTGFAVIHDAARAGQLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 284 FTLSRHKSVNIRAKN 298
L +H + N+ +N
Sbjct: 120 EFLVKHTASNVGHRN 134
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 150 GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE 209
G N DL +R + +H AA +G + +Q LLE + + D G PLHLAA+ G
Sbjct: 60 GANPDLKDRTGFAV---IHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 210 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 250
L+V++ L+ + R++ + +A +G +VS +
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.7 bits (73), Expect = 0.47, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 13/84 (15%)
Query: 6 LHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIR 65
+H AAR G + ++++ VN + D EGN PLH + H RV+
Sbjct: 74 IHDAARAGQLDTLQTLLEFQADVN-------------IEDNEGNLPLHLAAKEGHLRVVE 120
Query: 66 ILVEKDSAPSSYINKAYQTPLSIA 89
LV+ ++ + N T +A
Sbjct: 121 FLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 45.4 bits (106), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH-LAAENGELKVLKLLINKYPDA 223
N L AAA G+++ + LL+ + + + G T L + N E+ LL PD
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGNPEIARRLLLRGANPD- 64
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
++D + +++H AA+ G + + +L E + +N+ D GN LHLAA H VV
Sbjct: 65 --LKDRTGNAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 284 FTLSRHKSVNIRAKN 298
L +H + N+ +N
Sbjct: 120 EFLVKHTASNVGHRN 134
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 150 GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE 209
G N DL +R +H AA +G + +Q LLE + + D G PLHLAA+ G
Sbjct: 60 GANPDLKDRTG---NAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 210 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 250
L+V++ L+ + R++ + +A +G +VS +
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 30 QAGSASVLETLF------GMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ 83
+AG L+TL + D EGN PLH + H RV+ LV+ ++ + N
Sbjct: 79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD 138
Query: 84 TPLSIA 89
T +A
Sbjct: 139 TACDLA 144
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI 226
+H AA G + ++ L L K D G TPL A+ GE++ ++ L+ D I
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 227 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL 286
S L +A+ G +IV +L E + IN+ D NG T L A G H V L
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVRGNHVKCVEAL 121
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 141 FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP 200
+ DI+ +L + D IN DW+ PL YA +V+ V+ LL L + D +G TP
Sbjct: 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD-SGYTP 138
Query: 201 LHLAAENGELKVLKLLIN 218
+ LA G KV +++ N
Sbjct: 139 MDLAVALGYRKVQQVIEN 156
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEI 226
+H AA G + ++ L L K D G TPL A+ GE++ ++ L+ D I
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HI 64
Query: 227 RDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL 286
S L +A+ G +IV +L E + IN+ D NG T L A G H V L
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLL---ERDVDINIYDWNGGTPLLYAVHGNHVKCVEAL 121
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 141 FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP 200
+ DI+ +L + D IN DW+ PL YA +V+ V+ LL L + D +G TP
Sbjct: 81 YTDIVGLLLERDVD-INIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEAD-SGYTP 138
Query: 201 LHLAAENGELKVLKLLIN 218
+ LA G KV +++ N
Sbjct: 139 MDLAVALGYRKVQQVIEN 156
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
Q+ PLH A + ++ + LL A RD G TPLHLA E G L + +L
Sbjct: 45 QQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTT 103
Query: 223 A-----IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR-NGNTSLHLAAM 276
++ + + + LH+A+ HG IV ++ + +N + NG T+LHLA
Sbjct: 104 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS---LGADVNAQEPCNGRTALHLAVD 160
Query: 277 GLHSDVV 283
+ D+V
Sbjct: 161 LQNPDLV 167
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASK-----QLAYKRDCNG 197
+I +LG D R D+ PLH A G + V L ++ + + NG
Sbjct: 59 EIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 117
Query: 198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 253
T LHLA+ +G L +++LL++ D + R+ LH+A N ++VS +LK
Sbjct: 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 173
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 160 DWHQRNPLHYAAASGNVQMVQRLLEA--SKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
DW +PLH AA G+ + LL A S+ K D TPLH+AA G ++++L+
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVD---RTPLHMAASEGHANIVEVLL 87
Query: 218 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
D + +D + LH A +H + +V ++K
Sbjct: 88 KHGAD-VNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 70/141 (49%), Gaps = 7/141 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V+ L+ + + D G +PLHLAA+ G ++L+ + + + R
Sbjct: 9 AARAGQDDEVRILM--ANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTK 65
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
DR+ LH+AA G+ NIV +LK N +++ T+LH A H +VV L ++
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKM---TALHWATEHNHQEVVELLIKY 122
Query: 290 KSVNIRAKNRSARNNTTLEID 310
++ +++ + + ID
Sbjct: 123 -GADVHTQSKFCKTAFDISID 142
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 150 GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE 209
G ++D ++D R PLH AA+ G+ +V+ LL+ + K D T LH A E+
Sbjct: 57 GVSRDARTKVD---RTPLHMAASEGHANIVEVLLKHGADVNAK-DMLKMTALHWATEHNH 112
Query: 210 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 250
+V++LLI KY + + ++ ++ +GN ++ +
Sbjct: 113 QEVVELLI-KYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
+D TPLH+AA G IV ++K+ VN +D+ T LH H
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADVN-------------AKDMLKMTALHWATEHNH 112
Query: 61 KRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
+ V+ +L+ K A +K +T I+ID D+A
Sbjct: 113 QEVVELLI-KYGADVHTQSKFCKTAFDISIDNGNEDLA 149
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
Q+ PLH A + ++ + LL A RD G TPLHLA E G L + +L
Sbjct: 42 QQTPLHLAVITNQPEIAEALLGAGCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 100
Query: 223 A-----IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR-NGNTSLHLAAM 276
++ + + + LH+A+ HG IV ++ + +N + NG T+LHLA
Sbjct: 101 PHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS---LGADVNAQEPCNGRTALHLAVD 157
Query: 277 GLHSDVV 283
+ D+V
Sbjct: 158 LQNPDLV 164
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASK-----QLAYKRDCNG 197
+I +LG D R D+ PLH A G + V L ++ + + NG
Sbjct: 56 EIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG 114
Query: 198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 253
T LHLA+ +G L +++LL++ D + R+ LH+A N ++VS +LK
Sbjct: 115 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC 170
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH-LAAENGELKVLKLLINKYPDA 223
N L AAA G+++ + LL+ + + + G T L + N E+ LL PD
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGNPEIARRLLLRGANPD- 64
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
++D + +++H AA+ G + + +L E + +N+ D GN LHLAA H VV
Sbjct: 65 --LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 284 FTLSRHKSVNIRAKN 298
L +H + N+ +N
Sbjct: 120 EFLVKHTASNVGHRN 134
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 150 GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE 209
G N DL +R + +H AA +G + +Q LLE + + D G PLHLAA+ G
Sbjct: 60 GANPDLKDRTGFAV---IHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 210 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 250
L+V++ L+ + R++ + +A +G +VS +
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 30 QAGSASVLETLF------GMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ 83
+AG L+TL + D EGN PLH + H RV+ LV+ ++ + N
Sbjct: 79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD 138
Query: 84 TPLSIA 89
T +A
Sbjct: 139 TACDLA 144
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH-LAAENGELKVLKLLINKYPDA 223
N L AAA G+++ + LL+ + + + G T L + N E+ LL PD
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGNPEIARRLLLRGANPD- 64
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
++D + +++H AA+ G + + +L E + +N+ D GN LHLAA H VV
Sbjct: 65 --LKDRTGFAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 284 FTLSRHKSVNIRAKN 298
L +H + N+ +N
Sbjct: 120 EFLVKHTASNVGHRN 134
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 150 GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE 209
G N DL +R + +H AA +G + +Q LLE + + D G PLHLAA+ G
Sbjct: 60 GANPDLKDRTGFAV---IHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 210 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 250
L+V++ L+ + R++ + +A +G +VS +
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 30 QAGSASVLETLF------GMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ 83
+AG L+TL + D EGN PLH + H RV+ LV+ ++ + N
Sbjct: 79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD 138
Query: 84 TPLSIA 89
T +A
Sbjct: 139 TACDLA 144
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA + ++++V+ LL+ + D G TPLH
Sbjct: 27 DDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN-AIDAIGETPLH 85
Query: 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
L A G L+++++L+ D + +D ++ ++ +GN ++ + K
Sbjct: 86 LVAMYGHLEIVEVLLKHGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ D G TPLHLAA N L+++++L+ D I D
Sbjct: 21 AARAGQDDEV-RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAI-DA 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
+ LH+ A +G+ IV +LK +N D+ G T+ ++ + D+ L +
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGAD---VNAQDKFGKTAFDISIDNGNEDLAEILQK 134
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 61/121 (50%), Gaps = 6/121 (4%)
Query: 204 AAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLI 263
AA G+ +++L+ D + D + LH+AA + + IV +LK+ +N I
Sbjct: 21 AARAGQDDEVRILMANGAD-VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGAD---VNAI 76
Query: 264 DRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKH 323
D G T LHL AM H ++V L +H + ++ A+++ + + ID D+ E+ +
Sbjct: 77 DAIGETPLHLVAMYGHLEIVEVLLKHGA-DVNAQDKFGKTAFDISIDNGNE-DLAEILQK 134
Query: 324 L 324
L
Sbjct: 135 L 135
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 4 TPLHIAARIGDH-AIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
TPLH+AA + DH IV ++K VN D G TPLH V H
Sbjct: 49 TPLHLAA-MNDHLEIVEVLLKNGADVNAI-------------DAIGETPLHLVAMYGHLE 94
Query: 63 VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIA 98
++ +L+ K A + +K +T I+ID D+A
Sbjct: 95 IVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLA 129
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH-LAAENGELKVLKLLINKYPDA 223
N L AAA G+++ + LL+ + + + G T L + N E+ LL PD
Sbjct: 7 NELASAAARGDLEQLTSLLQNNVNVNAQNGF-GRTALQVMKLGNPEIARRLLLRGANPD- 64
Query: 224 IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVV 283
++D + +++H AA+ G + + +L E + +N+ D GN LHLAA H VV
Sbjct: 65 --LKDRTGFAVIHDAARAGFLDTLQTLL---ENQADVNIEDNEGNLPLHLAAKEGHLRVV 119
Query: 284 FTLSRHKSVNIRAKN 298
L +H + N+ +N
Sbjct: 120 EFLVKHTASNVGHRN 134
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 4/101 (3%)
Query: 150 GTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE 209
G N DL +R + +H AA +G + +Q LLE + + D G PLHLAA+ G
Sbjct: 60 GANPDLKDRTGFAV---IHDAARAGFLDTLQTLLENQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 210 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 250
L+V++ L+ + R++ + +A +G +VS +
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 30 QAGSASVLETLF------GMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQ 83
+AG L+TL + D EGN PLH + H RV+ LV+ ++ + N
Sbjct: 79 RAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD 138
Query: 84 TPLSIA 89
T +A
Sbjct: 139 TACDLA 144
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYP 221
++++ L AA SGN + + LL + D +TPLHLAA +++++LL+
Sbjct: 23 YKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGA 82
Query: 222 DAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
D + +D LH A +G++ + +LK N ++L
Sbjct: 83 D-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 2/102 (1%)
Query: 160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
D + PLH AA V++VQ LL+ + + +D G PLH A G +V +LL+ K
Sbjct: 55 DGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLL-K 112
Query: 220 YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLIN 261
+ + D + LH AA + S +L L+N
Sbjct: 113 HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 48/112 (42%), Gaps = 23/112 (20%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
TPLH+AA + ++ + K+ +N L++L G T LH H +
Sbjct: 249 TPLHVAAERAHNDVMEVLHKHGAKMN------ALDSL-------GQTALHRAALAGHLQT 295
Query: 64 IRILVEKDSAPS----------SYINKAYQTPLSIAIDVRLNDIACFIIDKS 105
R+L+ S PS N+A Q LS + +R +D+ +++ S
Sbjct: 296 CRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSDVDYRLLEAS 347
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 37/152 (24%)
Query: 170 AAASGNVQMVQRL------------------------------LEASKQLAYK--RDCNG 197
AAA G+VQ V+RL LE KQ A +D +G
Sbjct: 9 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 68
Query: 198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME 257
+P+H AA G L LK+L+ D + + D + +H+A + G+ +VSF+ ++
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 127
Query: 258 NLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
D G T L LA D+V L H
Sbjct: 128 RR----DARGLTPLELALQRGAQDLVDILQGH 155
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 141 FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP 200
F+D + K+L + +N D P+H A G+ +V L A++ ++RD G TP
Sbjct: 80 FLDTL-KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTP 136
Query: 201 LHLAAENGELKVLKLL 216
L LA + G ++ +L
Sbjct: 137 LELALQRGAQDLVDIL 152
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 37/152 (24%)
Query: 170 AAASGNVQMVQRL------------------------------LEASKQLAYK--RDCNG 197
AAA G+VQ V+RL LE KQ A +D +G
Sbjct: 15 AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSG 74
Query: 198 ATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEME 257
+P+H AA G L LK+L+ D + + D + +H+A + G+ +VSF+ ++
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLH 133
Query: 258 NLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289
D G T L LA D+V L H
Sbjct: 134 RR----DARGLTPLELALQRGAQDLVDILQGH 161
Score = 33.1 bits (74), Expect = 0.42, Method: Composition-based stats.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 141 FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP 200
F+D + K+L + +N D P+H A G+ +V L A++ ++RD G TP
Sbjct: 86 FLDTL-KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL--AAESDLHRRDARGLTP 142
Query: 201 LHLAAENGELKVLKLL 216
L LA + G ++ +L
Sbjct: 143 LELALQRGAQDLVDIL 158
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 108/232 (46%), Gaps = 43/232 (18%)
Query: 3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLF--GMR--DIEGN---TPLHNV 55
+TPLHIA G+ +PAV++ L LF G R DI N TPLH
Sbjct: 10 DTPLHIAVVQGN----------LPAVHR------LVNLFQQGGRELDIYNNLRQTPLHLA 53
Query: 56 VTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSES---LNAT 112
V V+R+LV ++P + +++ QT +A + R ++D ++ L A
Sbjct: 54 VITTLPSVVRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA- 111
Query: 113 RLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ-RNPLHYAA 171
R D LT LH V N + +++Q L L D I+ +D R+PL +A
Sbjct: 112 RNYDGLTALHVAV---NTECQETVQLL---------LERGAD-IDAVDIKSGRSPLIHAV 158
Query: 172 ASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
+ ++ MVQ LL+ + + +G++ LH A+ G L +++ L+ D+
Sbjct: 159 ENNSLSMVQLLLQHGANVNAQM-YSGSSALHSASGRGLLPLVRTLVRSGADS 209
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNG---ATPLHLAAENGELK 211
+ R D PLH A GN+ V RL+ +Q + D TPLHLA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 212 VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRN--GNT 269
V++LL+ + + D ++ H+A +H + + +L S ++L RN G T
Sbjct: 61 VVRLLVTAGASPMAL-DRHGQTAAHLACEHRSPTCLRALLDS-AAPGTLDLEARNYDGLT 118
Query: 270 SLHLA 274
+LH+A
Sbjct: 119 ALHVA 123
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 25/225 (11%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILV---EKDSAPSSYINKAYQTPLSIAIDVRLNDIACFI 101
D +G+TPLH V + + + LV ++ N QTPL +A+ L + +
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 102 IDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161
+ + + R T H ++ +++ +D GT LD
Sbjct: 66 VTAGASPMALDR--HGQTAAHLACEHRSPTCLRAL-----LDSAAP--GT-------LDL 109
Query: 162 HQRN-----PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
RN LH A + + VQ LLE + +G +PL A EN L +++LL
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169
Query: 217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLIN 261
+ ++ + + S S LH A+ G +V +++S +L N
Sbjct: 170 L-QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 213
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 20/189 (10%)
Query: 113 RLPDE--LTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYA 170
R PD+ +TLLH+ + DL K + +V LG + + PLH+A
Sbjct: 36 RQPDKENVTLLHWAAINNRIDLVK---YYISKGAIVDQLGGDLN---------STPLHWA 83
Query: 171 AASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNS 230
G++ MV +L++ + D G + +HLAA+ G ++ LI K D + N
Sbjct: 84 TRQGHLSMVVQLMKYGADPSLI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Query: 231 DRSILHVAAKHGNWNIVSFILKSPEMENLINLIDR-NGNTSLHLAAMGLHSDVVFTLSRH 289
++ A + + + +L +NL D+ + NT+LH A + ++ V+ +L
Sbjct: 143 MTPLMWAAYRTHSVDPTRLLLT---FNVSVNLGDKYHKNTALHWAVLAGNTTVI-SLLLE 198
Query: 290 KSVNIRAKN 298
N+ A+N
Sbjct: 199 AGANVDAQN 207
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 106/256 (41%), Gaps = 32/256 (12%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMR-------DIEGNTPLHNVV 56
TPL IAA G E ++ N+ +A V+ L D G T LH
Sbjct: 4 TPLMIAAVRGGGLDTGEDIEN----NEDSTAQVISDLLAQGAELNATMDKTGETSLHLAA 59
Query: 57 TKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPD 116
+ L++ + +S N +TPL A+ + ++ + +LNA R+ D
Sbjct: 60 RFARADAAKRLLDAGADANSQDNTG-RTPLHAAVAADAMGVFQILLRNRATNLNA-RMHD 117
Query: 117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNV 176
T L R I+ MV+ L T IN D + LH+AAA N
Sbjct: 118 GTTPL-ILAARL------------AIEGMVEDLITADADINAADNSGKTALHWAAAVNNT 164
Query: 177 QMVQRLL--EASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSI 234
+ V LL A++ +D TPL LAA G + K L++ + + EI D+ DR
Sbjct: 165 EAVNILLMHHANRDAQDDKD---ETPLFLAAREGSYEASKALLDNFANR-EITDHMDRLP 220
Query: 235 LHVAAKHGNWNIVSFI 250
VA++ + +IV +
Sbjct: 221 RDVASERLHHDIVRLL 236
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 44/95 (46%), Gaps = 1/95 (1%)
Query: 157 NRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216
N D R PLH A A+ + + Q LL R +G TPL LAA +++ L
Sbjct: 78 NSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDL 137
Query: 217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 251
I D I DNS ++ LH AA N V+ +L
Sbjct: 138 ITADAD-INAADNSGKTALHWAAAVNNTEAVNILL 171
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 72/161 (44%), Gaps = 10/161 (6%)
Query: 144 IMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHL 203
++ +L +L +D LH AA +RLL+A A +D G TPLH
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGAD-ANSQDNTGRTPLHA 90
Query: 204 AAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLI 263
A + V ++L+ + R + + L +AA+ +V ++ + + IN
Sbjct: 91 AVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITA---DADINAA 147
Query: 264 DRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNN 304
D +G T+LH AA +++ V L H + NR A+++
Sbjct: 148 DNSGKTALHWAAAVNNTEAVNILLMHHA------NRDAQDD 182
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 176 VQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSIL 235
Q++ LL +L D G T LHLAA K L++ DA +DN+ R+ L
Sbjct: 30 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPL 88
Query: 236 HVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA 275
H A + +L++ +N +G T L LAA
Sbjct: 89 HAAVAADAMGVFQILLRNRATN--LNARMHDGTTPLILAA 126
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCN--GATPLHLAAENGELKVLKLLINKYPDAIEIR 227
AAA G+VQ V+RLL ++L + N G T L + L+LL K + ++
Sbjct: 17 AAARGDVQEVRRLLH--RELVHPDALNRFGKTALQVMMFGSPAVALELL--KQGASPNVQ 72
Query: 228 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS 287
D S S +H AA+ G + + ++ E +N +D G+ +HLA HS VV L+
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLV---EHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 129
Query: 288 RHKSVNIRAKNRSARNNTTLEI 309
++ +R A T LE+
Sbjct: 130 PESDLH----HRDASGLTPLEL 147
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 141 FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP 200
F+D + K+L + +N LD P+H A G+ +V L A + + RD +G TP
Sbjct: 88 FLDTL-KVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLTP 144
Query: 201 LHLAAENGELKVLKLL 216
L LA + G ++ +L
Sbjct: 145 LELARQRGAQNLMDIL 160
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 43/142 (30%), Positives = 68/142 (47%), Gaps = 13/142 (9%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCN--GATPLHLAAENGELKVLKLLINKYPDAIEIR 227
AAA G+VQ V+RLL ++L + N G T L + L+LL K + ++
Sbjct: 15 AAARGDVQEVRRLLH--RELVHPDALNRFGKTALQVMMFGSPAVALELL--KQGASPNVQ 70
Query: 228 DNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS 287
D S S +H AA+ G + + ++ E +N +D G+ +HLA HS VV L+
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLV---EHGADVNALDSTGSLPIHLAIREGHSSVVSFLA 127
Query: 288 RHKSVNIRAKNRSARNNTTLEI 309
++ +R A T LE+
Sbjct: 128 PESDLH----HRDASGLTPLEL 145
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 141 FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP 200
F+D + K+L + +N LD P+H A G+ +V L A + + RD +G TP
Sbjct: 86 FLDTL-KVLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFL--APESDLHHRDASGLTP 142
Query: 201 LHLAAENGELKVLKLL 216
L LA + G ++ +L
Sbjct: 143 LELARQRGAQNLMDIL 158
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ +D +G TPLHLAA G L+++++L+ D + +D
Sbjct: 9 AARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD-VNAQDK 66
Query: 230 SDRSILHVAAKHGNWNIVSFILKS 253
++ ++ +GN ++ + K+
Sbjct: 67 FGKTAFDISIDNGNEDLAEILQKA 90
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202
D V+IL N +N D PLH AA G++++V+ LL+A + +D G T
Sbjct: 15 DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AQDKFGKTAFD 73
Query: 203 LAAENGELKVLKLL 216
++ +NG + ++L
Sbjct: 74 ISIDNGNEDLAEIL 87
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 200 PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENL 259
PLH AA+ G L L+ ++ + D + + L+ A G+ +IV + P +E
Sbjct: 76 PLHEAAKRGNLSWLRECLDNRV-GVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE-- 132
Query: 260 INLIDRNGNTSLHLAAMGLHSDVV-FTLSRHKSVNIR 295
+N ++ G+T+LH AA ++D+V L++ ++R
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLR 169
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNI 294
LH AAK GN +S++ + + +N +D+ G+T+L+ A G H D+V L ++ +
Sbjct: 77 LHEAAKRGN---LSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 295 RAKNR 299
+N+
Sbjct: 134 NQQNK 138
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAI 224
NPLH AA GN+ ++ L+ ++ D G+T L+ A G +++ L + +
Sbjct: 75 NPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIEL 133
Query: 225 EIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINL 262
++ + LH AA G +IV +L +L N+
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 16/191 (8%)
Query: 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDK 104
+++G T LH + +++ LVE + + N+ + PL A DIA ++I +
Sbjct: 70 NVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGW-IPLHAAASCGYLDIAEYLISQ 128
Query: 105 SSE----------SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKD 154
+ L+ LL V RQ D+ + + + I + N
Sbjct: 129 GAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSG 188
Query: 155 LINRLDWHQRN---PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELK 211
IN + H ++ LH AAA G ++++ L++A + K D +G TPLH AA G+ +
Sbjct: 189 HINDVR-HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK-DYDGWTPLHAAAHWGKEE 246
Query: 212 VLKLLINKYPD 222
++L+ D
Sbjct: 247 ACRILVENLCD 257
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 256
G T LH+AA G +VLKLLI D + I+D + LH AA G ++
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILV----- 252
Query: 257 ENLINL--IDRNGNTSLHLA 274
ENL ++ +++ G T+ +A
Sbjct: 253 ENLCDMEAVNKVGQTAFDVA 272
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
A +SG+ + V RLLE + Y + +G T LH A + + ++K L+ + I DN
Sbjct: 47 ACSSGDTEEVLRLLERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENGAN-INQPDN 104
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273
LH AA G +I +++ + ++ G+T L +
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAH---VGAVNSEGDTPLDI 145
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRV 63
T LH+AA G ++ +++ VN ++D +G TPLH +
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVN-------------IKDYDGWTPLHAAAHWGKEEA 247
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIA 89
RILVE + +NK QT +A
Sbjct: 248 CRILVE-NLCDMEAVNKVGQTAFDVA 272
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
Query: 175 NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSI 234
+V +VQ+LLE + ++ + G TPLH A + +++LL+ D + + N
Sbjct: 17 DVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPF 76
Query: 235 LHVAAKHGNWNIVS-FILKSPEMENLINLIDRNGNTSLHLAAM-GLHSDVVFTLSRHKSV 292
L +AA G+ ++ F+ K + +N D G T+ AA+ G + F R +V
Sbjct: 77 L-LAAIAGSVKLLKLFLSKGAD----VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131
Query: 293 NIRAKNRS 300
N+R K +
Sbjct: 132 NLRRKTKE 139
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 9/89 (10%)
Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDC---------NGATPLHLAAE 206
+N D++ AA G V+ ++ L + + +R GAT L AAE
Sbjct: 98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157
Query: 207 NGELKVLKLLINKYPDAIEIRDNSDRSIL 235
G ++VLK+L+++ + DN R+ L
Sbjct: 158 KGHVEVLKILLDEMGADVNACDNMGRNAL 186
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 99/232 (42%), Gaps = 15/232 (6%)
Query: 48 GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE 107
G TPLHN V + ++ +L+ + P K TP +A + + K ++
Sbjct: 39 GWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
Query: 108 SLNATRLPDELTLLHF--FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRN 165
+E F F+ Y K+++FL V + K+ RL
Sbjct: 98 -------VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150
Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPL-H--LAAENGELKVLKLLINKYPD 222
L AA G+V++++ LL+ D G L H L++++ +++ + L+ +
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210
Query: 223 AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA 274
+ +R ++ L +A + + +V +L+ +E IN D +G T+L LA
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLLA 260
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 36/66 (54%)
Query: 43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFII 102
+R G TPL V KKH +++ L+E++ + + +T L +A++++L IA +
Sbjct: 214 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 273
Query: 103 DKSSES 108
+ + +
Sbjct: 274 KRGAST 279
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 4/118 (3%)
Query: 155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLK 214
L N+ D LH AAA +RLLEAS A +D G TPLH A V +
Sbjct: 49 LHNQTDRTGATALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQ 107
Query: 215 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLH 272
+LI ++ R + + L +AA+ ++ ++ S +N +D G ++LH
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 162
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 6/121 (4%)
Query: 204 AAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLI 263
AA G+ +++L+ D + +D + L++A HG+ IV +LK+ +N +
Sbjct: 21 AARAGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD---VNAV 76
Query: 264 DRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKH 323
D G T LHLAA H ++ L +H + ++ A+++ + + I D+ E+ +
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLLKHGA-DVNAQDKFGKTAFDISIGNGNE-DLAEILQK 134
Query: 324 L 324
L
Sbjct: 135 L 135
Score = 35.8 bits (81), Expect = 0.066, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
AA +G V R+L A+ +D G TPL+LA +G L+++++L+ D + D
Sbjct: 21 AARAGQDDEV-RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDA 78
Query: 230 SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288
+ LH+AA G+ I +LK +N D+ G T+ ++ + D+ L +
Sbjct: 79 IGFTPLHLAAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDLAEILQK 134
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 4/95 (4%)
Query: 158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217
+ D H + +YA A NV++V LL A A K PLH AA + K++K+L+
Sbjct: 26 KADVHGHSASYYAIADNNVRLVCTLLNAG---ALKNLLENEFPLHQAATLEDTKIVKILL 82
Query: 218 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252
D + D + + L+ A GN V +K
Sbjct: 83 FSGLDDSQFDDKGNTA-LYYAVDSGNXQTVKLFVK 116
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 83/205 (40%), Gaps = 37/205 (18%)
Query: 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKH 60
M ET LHIAA + +M+ P + V E + EG T LH V ++
Sbjct: 36 MGETALHIAALYDNLEAAMVLMEAAPEL-------VFEPMTS-ELYEGQTALHIAVINQN 87
Query: 61 KRVIRILVEKDSAPSSYINKAY------------QTPLSIAIDVRLNDIACFIIDKSSES 108
++R L+ + ++ S+ + + PLS A V +I +I+ ++
Sbjct: 88 VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD- 146
Query: 109 LNATRLPDEL--TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRN- 165
R D L T+LH +++ N + Q ++++ G D + L+ N
Sbjct: 147 ---IRAQDSLGNTVLHILILQPNKTFA-----CQMYNLLLSYDG--GDHLKSLELVPNNQ 196
Query: 166 ---PLHYAAASGNVQMVQRLLEASK 187
P A GN+ M Q L++ K
Sbjct: 197 GLTPFKLAGVEGNIVMFQHLMQKRK 221
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
+PL AA +VQ + +LL+ ++R G T LH+AA L+ +L+ P+
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 224 IEIRDNSD----RSILHVAAKHGNWNIVSFIL 251
+ S+ ++ LH+A + N N+V +L
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALL 95
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 54/102 (52%), Gaps = 5/102 (4%)
Query: 199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK-SPEM- 256
+PL LAA+ +++ L L+ + R + LH+AA + N +++ +PE+
Sbjct: 5 SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 257 -ENLINLIDRNGNTSLHLAAMGLHSDVVFT-LSRHKSVNIRA 296
E + + + G T+LH+A + + ++V L+R SV+ RA
Sbjct: 65 FEPMTSEL-YEGQTALHIAVINQNVNLVRALLARGASVSARA 105
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 170 AAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN 229
A + +V +VQ+LLE + ++ + G TPLH A + +++LL+ D + +R
Sbjct: 32 AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKK 90
Query: 230 SDRSILHVAAKHGNWNIVS-FILKSPEMENLINLIDRNGNTSLHLAAM-GLHSDVVFTLS 287
+ + +AA G+ ++ F+ K + +N D G T+ AA+ G + F
Sbjct: 91 NGATPFILAAIAGSVKLLKLFLSKGAD----VNECDFYGFTAFMEAAVYGKVKALKFLYK 146
Query: 288 RHKSVNIRAKNRS 300
R +VN+R K +
Sbjct: 147 RGANVNLRRKTKE 159
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 99/232 (42%), Gaps = 15/232 (6%)
Query: 48 GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE 107
G TPLHN V + ++ +L+ + P K TP +A + + K ++
Sbjct: 59 GWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117
Query: 108 SLNATRLPDELTLLHF--FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRN 165
+E F F+ Y K+++FL V + K+ RL
Sbjct: 118 V-------NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 170
Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPL-H--LAAENGELKVLKLLINKYPD 222
L AA G+V++++ LL+ D G L H L++++ +++ + L+ +
Sbjct: 171 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 230
Query: 223 AIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA 274
+ +R ++ L +A + + +V +L+ +E IN D +G T+L LA
Sbjct: 231 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE--INDTDSDGKTALLLA 280
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFII 102
+R G TPL V KKH +++ L+E++ + + +T L +A++++L IA +
Sbjct: 234 VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLC 293
Query: 103 DKSSESLNATRLPDELTLLHFFVMRQNYDLS 133
K S + L R+NYD S
Sbjct: 294 -KRGASTDCGDL--------VMTARRNYDHS 315
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 164 RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA 223
+ PL A ++ +VQRLLE D +G T L LA E K+ +LL +
Sbjct: 240 KTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 299
Query: 224 ------IEIRDNSDRSILHVAAKHG 242
+ R N D S++ V HG
Sbjct: 300 DCGDLVMTARRNYDHSLVKVLLSHG 324
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 11/84 (13%)
Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKL 215
+NR R PLHYAA G +++++ LL + D + TPL A G + +KL
Sbjct: 28 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKL 86
Query: 216 LINKYPD----------AIEIRDN 229
L++K D A+E DN
Sbjct: 87 LLSKGADKTVKGPDGLTALEATDN 110
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 251
G PLH AA+ G+L++L+ L+ K D I D + L A G+ + V +L
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLL 88
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKL 215
+NR R PLHYAA G +++++ LL + D + TPL A G + +KL
Sbjct: 33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAP-DKHHITPLLSAVYEGHVSCVKL 91
Query: 216 LINKYPD 222
L++K D
Sbjct: 92 LLSKGAD 98
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFIL 251
G PLH AA+ G+L++L+ L+ K D I D + L A G+ + V +L
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYEGHVSCVKLLL 93
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
++ PLH A + +MV+ L +A L G TPLHLA E VL+LL+
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 220 YPD 222
D
Sbjct: 215 GAD 217
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%)
Query: 160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK 219
++ PLH A + +MV+ L +A L G TPLHLA E VL+LL+
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA 214
Query: 220 YPD 222
D
Sbjct: 215 GAD 217
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 153 KDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGEL 210
+++IN D PL +AAA G + +V+ LL+ A QL K + L LA G
Sbjct: 24 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR---ESALSLACSKGYT 80
Query: 211 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 243
++K+L++ D E N +L+ A HGN
Sbjct: 81 DIVKMLLDCGVDVNEYDWNGGTPLLY--AVHGN 111
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 141 FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP 200
+ DI+ +L D +N DW+ PL YA +V+ V+ LLE+ + D +G
Sbjct: 79 YTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNS 136
Query: 201 LHLAAENG--------ELKVLKLLIN 218
+ LA G E +LKLL N
Sbjct: 137 MDLAVALGYRSVQQVIESHLLKLLQN 162
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLK 214
L N+ D LH AA +RLLEAS A +D G TPLH A V +
Sbjct: 49 LHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQ 107
Query: 215 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLH 272
+LI ++ R + + L +AA+ ++ ++ S +N +D G ++LH
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 162
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 101/250 (40%), Gaps = 67/250 (26%)
Query: 3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
ET LH+AAR +++ N ++D G TPLH V+ +
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADAN-------------IQDNMGRTPLHAAVSADAQG 104
Query: 63 VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
V +IL+ N+A +D R++D +I A RL
Sbjct: 105 VFQILIR---------NRATD------LDARMHDGTTPLI-------LAARLA------- 135
Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
++ M++ L + +N +D ++ LH+AAA NV L
Sbjct: 136 -------------------VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176
Query: 183 LE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
L+ A+K + R+ TPL LAA G + K+L++ + + +I D+ DR +A +
Sbjct: 177 LKNGANKDMQNNRE---ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQE 232
Query: 241 HGNWNIVSFI 250
+ +IV +
Sbjct: 233 RMHHDIVRLL 242
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 153 KDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGEL 210
+++IN D PL +AAA G + +V+ LL+ A QL K + L LA G
Sbjct: 42 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR---ESALSLACSKGYT 98
Query: 211 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 243
++K+L++ D E N +L+ A HGN
Sbjct: 99 DIVKMLLDCGVDVNEYDWNGGTPLLY--AVHGN 129
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 141 FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP 200
+ DI+ +L D +N DW+ PL YA +V+ V+ LLE+ + D +G
Sbjct: 97 YTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNS 154
Query: 201 LHLAAENG--------ELKVLKLLIN 218
+ LA G E +LKLL N
Sbjct: 155 MDLAVALGYRSVQQVIESHLLKLLQN 180
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 153 KDLINRLDWHQRNPLHYAAASGNVQMVQRLLE--ASKQLAYKRDCNGATPLHLAAENGEL 210
+++IN D PL +AAA G + +V+ LL+ A QL K + L LA G
Sbjct: 26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGR---ESALSLACSKGYT 82
Query: 211 KVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN 243
++K+L++ D E N +L+ A HGN
Sbjct: 83 DIVKMLLDCGVDVNEYDWNGGTPLLY--AVHGN 113
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 10/86 (11%)
Query: 141 FIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP 200
+ DI+ +L D +N DW+ PL YA +V+ V+ LLE+ + D +G
Sbjct: 81 YTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD-SGYNS 138
Query: 201 LHLAAENG--------ELKVLKLLIN 218
+ LA G E +LKLL N
Sbjct: 139 MDLAVALGYRSVQQVIESHLLKLLQN 164
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNS-------------DRSILHVAAKHG 242
G + LH+A E L+ +KLL+ D + +R L +AA
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTK 147
Query: 243 NWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276
W++V+++L++P + D GNT LH M
Sbjct: 148 QWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 50/189 (26%)
Query: 47 EGNTPLHNVVTKKHKRVIRILVEKDS-----APSSYINKAYQT-------PLSIAIDVRL 94
+G++ LH + K+ + +++LVE + A + K T PLS+A +
Sbjct: 89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148
Query: 95 NDIACFIIDKSSE--SLNATRLPDEL--TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILG 150
D+ ++++ + SL AT D L T+LH VM + S + D
Sbjct: 149 WDVVTYLLENPHQPASLEAT---DSLGNTVLHALVMIADNSPENSALVIHMYD------- 198
Query: 151 TNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGEL 210
G +QM RL + QL + G TPL LAA+ G++
Sbjct: 199 -----------------------GLLQMGARLC-PTVQLEEISNHQGLTPLKLAAKEGKI 234
Query: 211 KVLKLLINK 219
++ + ++ +
Sbjct: 235 EIFRHILQR 243
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 14/94 (14%)
Query: 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNS-------------DRSILHVAAKHG 242
G + LH+A E L+ +KLL+ D + +R L +AA
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTK 160
Query: 243 NWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276
W++V+++L++P + D GNT LH M
Sbjct: 161 QWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 194
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 77/189 (40%), Gaps = 50/189 (26%)
Query: 47 EGNTPLHNVVTKKHKRVIRILVEKDS-----APSSYINKAYQT-------PLSIAIDVRL 94
+G++ LH + K+ + +++LVE + A + K T PLS+A +
Sbjct: 102 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 161
Query: 95 NDIACFIIDKSSE--SLNATRLPDEL--TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILG 150
D+ ++++ + SL AT D L T+LH VM + S + D
Sbjct: 162 WDVVTYLLENPHQPASLEAT---DSLGNTVLHALVMIADNSPENSALVIHMYD------- 211
Query: 151 TNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGEL 210
G +QM RL + QL + G TPL LAA+ G++
Sbjct: 212 -----------------------GLLQMGARLC-PTVQLEEISNHQGLTPLKLAAKEGKI 247
Query: 211 KVLKLLINK 219
++ + ++ +
Sbjct: 248 EIFRHILQR 256
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLK 214
L N+ D LH AA +RLLEAS A +D G TPLH A V +
Sbjct: 50 LHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQ 108
Query: 215 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLH 272
+LI ++ R + + L +AA+ ++ ++ S +N +D G ++LH
Sbjct: 109 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 163
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 107/261 (40%), Gaps = 72/261 (27%)
Query: 3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
ET LH+AAR +++ N ++D G TPLH V+ +
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADAN-------------IQDNMGRTPLHAAVSADAQG 105
Query: 63 VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
V +IL+ N+A +D R++D +I A RL
Sbjct: 106 VFQILIR---------NRATD------LDARMHDGTTPLI-------LAARLA------- 136
Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
++ M++ L + +N +D ++ LH+AAA NV L
Sbjct: 137 -------------------VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 177
Query: 183 LE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
L+ A+K + R+ TPL LAA G + K+L++ + + +I D+ DR +A +
Sbjct: 178 LKNGANKDMQNNRE---ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQE 233
Query: 241 HGNWNIVSF-----ILKSPEM 256
+ +IV +++SP++
Sbjct: 234 RMHHDIVRLLDEYNLVRSPQL 254
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLK 214
L N+ D LH AA +RLLEAS A +D G TPLH A V +
Sbjct: 17 LHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVSADAQGVFQ 75
Query: 215 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLH 272
+LI ++ R + + L +AA+ ++ ++ S +N +D G ++LH
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS---HADVNAVDDLGKSALH 130
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 61/261 (23%), Positives = 107/261 (40%), Gaps = 72/261 (27%)
Query: 3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKR 62
ET LH+AAR +++ N ++D G TPLH V+ +
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADAN-------------IQDNMGRTPLHAAVSADAQG 72
Query: 63 VIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122
V +IL+ N+A +D R++D +I A RL
Sbjct: 73 VFQILIR---------NRATD------LDARMHDGTTPLI-------LAARLA------- 103
Query: 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRL 182
++ M++ L + +N +D ++ LH+AAA NV L
Sbjct: 104 -------------------VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144
Query: 183 LE--ASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240
L+ A+K + R+ TPL LAA G + K+L++ + + +I D+ DR +A +
Sbjct: 145 LKNGANKDMQNNRE---ETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQE 200
Query: 241 HGNWNIVSF-----ILKSPEM 256
+ +IV +++SP++
Sbjct: 201 RMHHDIVRLLDEYNLVRSPQL 221
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 18/112 (16%)
Query: 173 SGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI----NKYPDAIEIRD 228
SGN Q L+ A Y R G + LH+A E L+ +KLL+ N + A
Sbjct: 77 SGNPQP---LVNAQCTDDYYR---GHSALHIAIEKRSLQCVKLLVENGANVHARACGRFF 130
Query: 229 NSDRSI--------LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLH 272
+ L +AA W++VS++L++P + D GNT LH
Sbjct: 131 QKGQGTCFYFGELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLH 182
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Query: 155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLK 214
L N+ D LH AA +RLLEAS A +D G TPLH A V +
Sbjct: 14 LHNQTDRTGETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLHAAVSADAQGVFQ 72
Query: 215 LLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLH 272
+L+ ++ R + + L +AA+ ++ ++ S +N +D G ++LH
Sbjct: 73 ILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHAD---VNAVDDLGKSALH 127
>pdb|2AJA|A Chain A, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21.
pdb|2AJA|B Chain B, X-Ray Structure Of An Ankyrin Repeat Family Protein Q5zsv0
From Legionella Pneumophila. Northeast Structural
Genomics Consortium Target Lgr21
Length = 376
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 148 ILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLE-ASKQLAYKRDCNGATPLHLAAE 206
+L T+ +++ + AA +G++ ++ RL E A ++ LAAE
Sbjct: 113 LLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIXAXIQAENYHAFRLAAE 172
Query: 207 NGELKVLKLLINKYPD--AIEIRDNSDRSILHVAAKHGNWNIVSFILKSP 254
NG L VL L P I+ + + A G+ N+++F+L P
Sbjct: 173 NGHLHVLNRLCELAPTEATAXIQAENYYAFRWAAVGRGHHNVINFLLDCP 222
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAI 224
+P+H AA G+V+ V L+ + +K G TPL+LA EN + +K L+ D
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGADVN 161
Query: 225 EIRDNSDRSILHVAAKHGNWNIVSFIL 251
+ + S LH A+ + + ++
Sbjct: 162 QGKGQD--SPLHAVARTASEELACLLM 186
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 29/142 (20%)
Query: 161 WHQRNPLHYAAASGNVQMVQRLLEASKQL--------------------AYKRDCNGATP 200
WH + P+H A + +V L+E +K+ ++ + C G T
Sbjct: 82 WHGQKPIHLAVXANKTDLVVALVEGAKERGQXPESLLNECDEREVNEIGSHVKHCKGQTA 141
Query: 201 LHLAAENGE--LKVLKLLI--NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PE 255
LH G L+ +K+L+ P A +D +D + L A + N + + P
Sbjct: 142 LHWCVGLGPEYLEXIKILVQLGASPTA---KDKADETPLXRAXEFRNREALDLXXDTVPS 198
Query: 256 MENL-INLIDRNGNTSLHLAAM 276
+L ++ ++ GN+ LH A +
Sbjct: 199 KSSLRLDYANKQGNSHLHWAIL 220
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 154 DLINRLDWHQRNP----------LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHL 203
DL+ R+ + +P LH A +G+ ++V+ L++ + D +G TPLH
Sbjct: 51 DLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHC 109
Query: 204 AAENGELKVLKLLI 217
AA ++V K L+
Sbjct: 110 AASCNNVQVCKFLV 123
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 11/74 (14%)
Query: 154 DLINRLDWHQRNP----------LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHL 203
DL+ R+ + +P LH A +G+ ++V+ L++ + D +G TPLH
Sbjct: 51 DLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHC 109
Query: 204 AAENGELKVLKLLI 217
AA ++V K L+
Sbjct: 110 AASCNNVQVCKFLV 123
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 144 IMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHL 203
+ + L N +N+ D R PLH+A G+ + L+ L RD G PL +
Sbjct: 249 LACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTI 307
Query: 204 AAENGELKVLKLL 216
A E ++ LL
Sbjct: 308 AMETANADIVTLL 320
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 144 IMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHL 203
+ + L N +N+ D R PLH+A G+ + L+ L RD G PL +
Sbjct: 249 LACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTI 307
Query: 204 AAENGELKVLKLL 216
A E ++ LL
Sbjct: 308 AMETANADIVTLL 320
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 1/73 (1%)
Query: 144 IMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHL 203
+ + L N +N+ D R PLH+A G+ + L+ L RD G PL +
Sbjct: 249 LACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLG-ARDSEGRDPLTI 307
Query: 204 AAENGELKVLKLL 216
A E ++ LL
Sbjct: 308 AMETANADIVTLL 320
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222
+P+H AA G+V+ V L+ + +K G TPL+LA EN + +K L+ D
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLLESGAD 215
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 17/138 (12%)
Query: 64 IRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDE--LTLL 121
+R ++ K +P +A PL + +D L ++ ++ + +N P+E +T L
Sbjct: 1 MRSVLRKAGSPRK-ARRARLNPLVLLLDAALTG-ELEVVQQAVKEMNDPSQPNEEGITAL 58
Query: 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQR 181
H + NY + +D ++ G N +N D H PLH AA+ + +
Sbjct: 59 HNAICGANYSI---------VDFLI-TAGAN---VNSPDSHGWTPLHCAASCNDTVICMA 105
Query: 182 LLEASKQLAYKRDCNGAT 199
L++ + +GAT
Sbjct: 106 LVQHGAAIFATTLSDGAT 123
>pdb|3HNC|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HNC|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp
pdb|3HND|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HND|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effector Ttp And Substrate Gdp
pdb|3HNE|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNE|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Atp
pdb|3HNF|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
pdb|3HNF|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase 1
Bound To The Effectors Ttp And Datp
Length = 792
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 153 KDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKR--DCNGATPLHLAAENG 208
KDL R WH+ A +G++Q + + + KQL YK + + T L +AAE G
Sbjct: 643 KDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQL-YKTVWEISQKTVLKMAAERG 699
>pdb|2WGH|A Chain A, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg.
pdb|2WGH|B Chain B, Human Ribonucleotide Reductase R1 Subunit (Rrm1) In
Complex With Datp And Mg
Length = 676
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 153 KDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKR--DCNGATPLHLAAENG 208
KDL R WH+ A +G++Q + + + KQL YK + + T L +AAE G
Sbjct: 570 KDLTERGLWHEEMKNQIIACNGSIQSIPEIPDDLKQL-YKTVWEISQKTVLKMAAERG 626
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 166 PLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIE 225
P YA A G +++ +L+ + K + G L AAE G + +KLL+ + I+
Sbjct: 75 PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID 134
Query: 226 IRDNSDRSIL--HVAAKHGN---WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS 280
+++ + L V + GN +IV ++++ + ++ D +G T++ A ++
Sbjct: 135 FQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQ---SIKDNSGRTAMDYANQKGYT 191
Query: 281 DVVFTLSRH 289
++ L+++
Sbjct: 192 EISKILAQY 200
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,983,844
Number of Sequences: 62578
Number of extensions: 516738
Number of successful extensions: 2175
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1253
Number of HSP's gapped (non-prelim): 463
length of query: 534
length of database: 14,973,337
effective HSP length: 103
effective length of query: 431
effective length of database: 8,527,803
effective search space: 3675483093
effective search space used: 3675483093
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)