Query 039300
Match_columns 534
No_of_seqs 589 out of 3190
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 14:03:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 5.2E-46 1.8E-50 381.1 29.9 298 1-338 46-372 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.7E-45 5.9E-50 377.2 32.0 294 1-338 13-306 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 1.4E-43 4.8E-48 350.1 28.4 292 2-338 25-329 (337)
4 1wdy_A 2-5A-dependent ribonucl 100.0 7.4E-43 2.5E-47 336.0 27.8 264 2-299 5-284 (285)
5 3utm_A Tankyrase-1; tankyrase, 100.0 3.3E-41 1.1E-45 334.7 28.7 274 2-312 24-322 (351)
6 1wdy_A 2-5A-dependent ribonucl 100.0 3.3E-41 1.1E-45 324.5 25.4 264 47-338 4-281 (285)
7 3d9h_A CDNA FLJ77766, highly s 100.0 5.5E-41 1.9E-45 323.1 22.1 268 1-295 14-281 (285)
8 2xai_A ASB-9, ankyrin repeat a 100.0 8.2E-41 2.8E-45 317.8 22.6 250 1-285 2-256 (261)
9 3ljn_A Hypothetical protein; a 100.0 8.1E-41 2.8E-45 334.0 21.6 279 2-334 20-314 (364)
10 1oy3_D Transcription factor in 100.0 9.5E-40 3.3E-44 314.0 23.0 259 1-313 8-268 (282)
11 4g8k_A 2-5A-dependent ribonucl 100.0 5.4E-39 1.9E-43 317.2 28.5 260 2-298 59-331 (337)
12 2fo1_E LIN-12 protein; beta-ba 100.0 2.4E-40 8.4E-45 331.1 19.0 257 1-289 93-368 (373)
13 3d9h_A CDNA FLJ77766, highly s 100.0 1.5E-39 5.2E-44 313.0 22.3 259 44-336 11-280 (285)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 1.2E-39 4.2E-44 308.2 20.2 231 41-290 3-246 (253)
15 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-38 3.7E-43 316.6 26.7 280 1-312 57-348 (351)
16 2xai_A ASB-9, ankyrin repeat a 100.0 1.1E-38 3.9E-43 303.0 23.2 240 47-313 2-248 (261)
17 2fo1_E LIN-12 protein; beta-ba 100.0 7.9E-40 2.7E-44 327.4 15.0 299 4-336 39-372 (373)
18 1yyh_A HN1;, notch 1, ankyrin 100.0 2.8E-38 9.5E-43 298.9 23.1 225 1-254 9-246 (253)
19 2dzn_A Probable 26S proteasome 100.0 2.9E-38 1E-42 293.7 22.7 224 1-289 1-227 (228)
20 1k1a_A B-cell lymphoma 3-encod 100.0 1.6E-38 5.6E-43 298.0 20.4 233 41-289 2-238 (241)
21 3aji_A 26S proteasome non-ATPa 100.0 8.1E-38 2.8E-42 291.4 23.4 223 1-289 5-227 (231)
22 1oy3_D Transcription factor in 100.0 2.2E-38 7.4E-43 304.5 20.1 231 41-313 2-235 (282)
23 3b7b_A Euchromatic histone-lys 100.0 1.5E-37 5.1E-42 290.8 23.7 223 41-283 4-226 (237)
24 3aji_A 26S proteasome non-ATPa 100.0 3.1E-37 1.1E-41 287.5 24.8 228 45-335 3-230 (231)
25 2dzn_A Probable 26S proteasome 100.0 2.1E-37 7.3E-42 287.9 21.6 212 48-312 2-217 (228)
26 3eu9_A Huntingtin-interacting 100.0 9.7E-37 3.3E-41 285.5 23.2 222 2-289 9-232 (240)
27 3b7b_A Euchromatic histone-lys 100.0 1E-36 3.5E-41 285.2 23.2 222 1-252 10-231 (237)
28 1k1a_A B-cell lymphoma 3-encod 100.0 4E-37 1.4E-41 288.6 19.6 225 1-255 8-240 (241)
29 4b93_B Ankyrin repeat domain-c 100.0 1.5E-37 5.2E-42 295.7 16.2 223 3-286 12-235 (269)
30 1s70_B 130 kDa myosin-binding 100.0 2.4E-37 8.3E-42 300.0 16.7 246 2-288 40-285 (299)
31 4b93_B Ankyrin repeat domain-c 100.0 6.4E-37 2.2E-41 291.4 14.6 222 43-312 6-227 (269)
32 3ljn_A Hypothetical protein; a 100.0 3.9E-36 1.3E-40 300.1 19.5 253 42-336 14-270 (364)
33 1s70_B 130 kDa myosin-binding 100.0 1.6E-36 5.5E-41 294.2 15.8 272 7-312 3-274 (299)
34 3kea_A K1L; tropism, ANK repea 100.0 1.2E-35 4.1E-40 285.7 19.2 225 43-299 26-252 (285)
35 2f8y_A Notch homolog 1, transl 100.0 6.2E-35 2.1E-39 270.3 20.4 212 13-289 2-213 (223)
36 2f8y_A Notch homolog 1, transl 100.0 4.5E-35 1.6E-39 271.2 18.8 202 58-314 1-202 (223)
37 3eu9_A Huntingtin-interacting 100.0 1.1E-34 3.9E-39 271.4 21.5 232 43-337 4-237 (240)
38 2rfa_A Transient receptor pote 100.0 4.7E-34 1.6E-38 266.1 20.6 205 1-254 2-220 (232)
39 1ikn_D Protein (I-kappa-B-alph 100.0 4.3E-35 1.5E-39 273.9 12.2 215 43-312 3-228 (236)
40 1sw6_A Regulatory protein SWI6 100.0 1.2E-35 4.2E-40 291.4 8.4 253 12-312 29-325 (327)
41 3kea_A K1L; tropism, ANK repea 100.0 1.4E-33 4.9E-38 271.2 21.0 236 59-338 11-249 (285)
42 1sw6_A Regulatory protein SWI6 100.0 2.1E-34 7.2E-39 282.6 15.4 246 1-278 51-327 (327)
43 1ikn_D Protein (I-kappa-B-alph 100.0 1.6E-34 5.3E-39 270.2 13.3 221 1-276 7-228 (236)
44 2rfa_A Transient receptor pote 100.0 3.8E-33 1.3E-37 260.0 20.8 203 47-295 2-224 (232)
45 3hra_A Ankyrin repeat family p 100.0 2.9E-32 1E-36 248.0 22.9 190 2-253 5-200 (201)
46 3hra_A Ankyrin repeat family p 100.0 4.9E-32 1.7E-36 246.5 22.8 193 46-289 3-200 (201)
47 2etb_A Transient receptor pote 100.0 5.4E-33 1.8E-37 263.1 13.8 98 1-107 1-115 (256)
48 2pnn_A Transient receptor pote 100.0 6.7E-33 2.3E-37 265.1 13.1 220 43-306 8-270 (273)
49 2etb_A Transient receptor pote 100.0 1.1E-31 3.7E-36 254.1 13.0 200 116-338 1-249 (256)
50 4gpm_A Engineered protein OR26 100.0 1.1E-30 3.8E-35 229.5 18.6 155 5-222 7-161 (169)
51 3jxi_A Vanilloid receptor-rela 100.0 1.2E-31 4.2E-36 254.3 11.7 204 45-290 2-248 (260)
52 4gpm_A Engineered protein OR26 100.0 2.9E-30 9.9E-35 226.9 18.7 136 155-296 29-164 (169)
53 2pnn_A Transient receptor pote 100.0 1.6E-30 5.3E-35 248.6 15.1 198 116-336 12-259 (273)
54 3jxi_A Vanilloid receptor-rela 100.0 4.6E-30 1.6E-34 243.4 13.2 202 116-340 4-255 (260)
55 4hbd_A KN motif and ankyrin re 100.0 1E-29 3.4E-34 243.1 15.1 196 49-291 77-274 (276)
56 4hbd_A KN motif and ankyrin re 100.0 1.7E-29 5.8E-34 241.5 13.7 180 83-314 77-261 (276)
57 2vge_A RELA-associated inhibit 100.0 2.1E-31 7.1E-36 247.1 -1.5 206 18-287 1-208 (229)
58 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.2E-28 1.1E-32 213.1 16.0 156 3-221 6-161 (162)
59 3v30_A DNA-binding protein rfx 100.0 3.5E-28 1.2E-32 215.2 16.4 138 161-306 34-171 (172)
60 3v31_A Ankyrin repeat family A 100.0 5.9E-28 2E-32 212.6 17.3 159 1-222 2-160 (167)
61 2rfm_A Putative ankyrin repeat 100.0 4E-28 1.4E-32 218.9 16.5 164 39-253 26-189 (192)
62 2aja_A Ankyrin repeat family p 100.0 3.4E-30 1.1E-34 255.2 2.9 233 46-312 90-358 (376)
63 3v30_A DNA-binding protein rfx 100.0 4.1E-28 1.4E-32 214.8 15.6 145 163-314 2-146 (172)
64 2rfm_A Putative ankyrin repeat 100.0 6.1E-28 2.1E-32 217.7 16.0 166 154-334 26-191 (192)
65 2y1l_E Darpin-8.4; hydrolase-i 100.0 1.8E-27 6.1E-32 209.9 17.5 158 45-253 11-168 (169)
66 1ihb_A P18-INK4C(INK6), cyclin 100.0 1.8E-27 6.2E-32 208.3 16.1 158 47-255 4-161 (162)
67 2aja_A Ankyrin repeat family p 100.0 3.2E-30 1.1E-34 255.4 -1.9 244 2-289 92-371 (376)
68 3v31_A Ankyrin repeat family A 99.9 2.5E-27 8.7E-32 208.5 16.0 162 162-338 2-163 (167)
69 1awc_B Protein (GA binding pro 99.9 4.2E-27 1.4E-31 203.9 16.9 151 2-216 2-152 (153)
70 2y1l_E Darpin-8.4; hydrolase-i 99.9 9.7E-27 3.3E-31 205.2 18.4 159 78-289 10-168 (169)
71 3f6q_A Integrin-linked protein 99.9 8E-27 2.7E-31 207.9 16.4 164 161-338 3-166 (179)
72 1ycs_B 53BP2, P53BP2; ankyrin 99.9 5.4E-29 1.8E-33 232.9 1.4 209 47-312 4-227 (239)
73 1awc_B Protein (GA binding pro 99.9 2.5E-26 8.4E-31 199.1 17.2 150 49-250 3-152 (153)
74 3twr_A Tankyrase-2; ankyrin re 99.9 7E-27 2.4E-31 205.3 13.9 160 44-254 4-163 (165)
75 3twr_A Tankyrase-2; ankyrin re 99.9 3.9E-27 1.3E-31 206.9 12.3 161 159-334 4-164 (165)
76 3f6q_A Integrin-linked protein 99.9 1.3E-26 4.5E-31 206.4 13.4 167 115-299 3-169 (179)
77 1ycs_B 53BP2, P53BP2; ankyrin 99.9 4.8E-28 1.6E-32 226.4 4.2 179 79-312 2-190 (239)
78 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.6E-26 1.6E-30 198.0 15.5 154 117-289 2-155 (156)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 7.9E-26 2.7E-30 196.5 16.3 154 48-253 2-155 (156)
80 2vge_A RELA-associated inhibit 99.9 8.9E-28 3E-32 222.6 3.4 190 65-313 2-198 (229)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 3.4E-25 1.2E-29 192.5 9.4 147 156-311 5-152 (156)
82 1d9s_A Cyclin-dependent kinase 99.9 8.3E-25 2.8E-29 185.3 10.3 133 154-293 3-136 (136)
83 3t8k_A Uncharacterized protein 99.9 1.4E-24 4.6E-29 193.9 7.6 161 117-298 6-184 (186)
84 3t8k_A Uncharacterized protein 99.9 1.8E-24 6.1E-29 193.2 7.7 161 163-338 6-182 (186)
85 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.1E-22 3.9E-27 169.4 15.5 93 1-107 1-93 (126)
86 1d9s_A Cyclin-dependent kinase 99.9 1.3E-23 4.5E-28 177.9 9.5 130 191-335 6-136 (136)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 3.7E-23 1.3E-27 175.1 12.2 127 158-289 9-135 (136)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.8E-23 3E-27 170.1 14.3 126 162-293 1-126 (126)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 6.1E-23 2.1E-27 173.8 13.5 115 2-132 14-128 (136)
90 1bi7_B P16INK4A, MTS1, multipl 99.9 3.3E-23 1.1E-27 179.9 11.4 113 156-274 38-151 (156)
91 3deo_A Signal recognition part 99.9 6.8E-23 2.3E-27 183.0 12.3 138 2-185 44-181 (183)
92 3ui2_A Signal recognition part 99.9 7.6E-23 2.6E-27 191.5 12.1 140 2-187 45-184 (244)
93 3c5r_A BARD-1, BRCA1-associate 99.9 1.1E-22 3.6E-27 172.5 10.5 114 192-312 5-118 (137)
94 3c5r_A BARD-1, BRCA1-associate 99.9 7.3E-23 2.5E-27 173.5 8.3 127 158-289 5-131 (137)
95 3deo_A Signal recognition part 99.9 1.1E-21 3.8E-26 175.1 10.4 140 159-331 40-180 (183)
96 3aaa_C Myotrophin, protein V-1 99.9 2.4E-21 8.3E-26 160.8 11.4 112 194-312 4-115 (123)
97 3aaa_C Myotrophin, protein V-1 99.9 1.1E-21 3.7E-26 162.9 9.2 112 160-276 4-115 (123)
98 3ui2_A Signal recognition part 99.9 2.3E-21 7.7E-26 181.5 12.4 143 160-335 42-185 (244)
99 3ehr_A Osteoclast-stimulating 99.9 4.2E-22 1.4E-26 183.8 7.1 138 156-299 66-204 (222)
100 2b0o_E UPLC1; arfgap, structur 99.8 9.4E-21 3.2E-25 182.6 16.2 137 163-312 151-295 (301)
101 2b0o_E UPLC1; arfgap, structur 99.8 1.1E-20 3.7E-25 182.2 16.0 204 44-280 87-299 (301)
102 1n0q_A 3ANK, 3 ankyrin repeats 99.8 7.3E-21 2.5E-25 149.3 11.6 93 1-107 1-93 (93)
103 1dcq_A PYK2-associated protein 99.8 9.5E-21 3.2E-25 180.5 14.5 124 163-290 130-261 (278)
104 3ehr_A Osteoclast-stimulating 99.8 1.1E-20 3.7E-25 174.2 9.9 132 193-338 69-201 (222)
105 3jue_A Arfgap with coiled-coil 99.8 3.8E-20 1.3E-24 182.4 12.2 147 159-312 195-346 (368)
106 1dcq_A PYK2-associated protein 99.8 2.9E-19 9.8E-24 170.2 16.1 197 44-256 62-263 (278)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.7E-19 5.7E-24 141.5 11.0 90 196-289 1-90 (93)
108 2l6b_A NR1C; ankyrin, consensu 99.8 1.1E-19 3.8E-24 148.7 9.8 109 192-307 4-112 (115)
109 3lvq_E ARF-GAP with SH3 domain 99.8 1.9E-19 6.4E-24 186.3 13.2 131 164-299 133-271 (497)
110 3lvq_E ARF-GAP with SH3 domain 99.8 4E-19 1.4E-23 183.9 13.4 119 4-132 134-255 (497)
111 3jue_A Arfgap with coiled-coil 99.8 3.7E-19 1.3E-23 175.3 12.3 114 3-132 200-316 (368)
112 2l6b_A NR1C; ankyrin, consensu 99.8 1E-18 3.5E-23 142.9 8.3 108 158-270 4-111 (115)
113 2zgd_A 3 repeat synthetic anky 99.7 2.6E-17 9E-22 133.2 9.2 87 1-101 23-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 9.5E-17 3.2E-21 129.9 9.3 90 193-286 20-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 61.3 13 0.00046 35.3 6.4 190 43-245 68-267 (351)
116 3gvo_A Pumilio 2, pumilio homo 46.3 15 0.00053 34.9 4.0 225 44-281 33-267 (351)
117 3k49_A MRNA-binding protein PU 43.3 41 0.0014 32.1 6.6 89 43-132 73-165 (369)
118 1gp8_A Protein (scaffolding pr 33.5 31 0.0011 20.5 2.3 19 6-24 17-35 (40)
119 3zrh_A Ubiquitin thioesterase 33.1 1E+02 0.0035 29.5 7.1 61 8-69 28-90 (454)
120 2om2_B Regulator of G-protein 20.7 38 0.0013 19.9 1.1 20 512-531 3-22 (36)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.2e-46 Score=381.05 Aligned_cols=298 Identities=24% Similarity=0.352 Sum_probs=212.7
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|+||||+||+.|+.++|++|+++|++++. +|..|.||||+|+..|+.++|++|+++|+++. ..+.
T Consensus 46 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~ 111 (437)
T 1n11_A 46 KVETPLHMAARAGHTEVAKYLLQNKAKVNA-------------KAKDDQTPLHCAARIGHTNMVKLLLENNANPN-LATT 111 (437)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-------------CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-------------CCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCC-CCCC
Confidence 378899999999999999999998888774 56667777777777777777777777776654 4566
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHH------------
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKI------------ 148 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~------------ 148 (534)
.|.||||+|+..|+.+++++|++++++ .+..+. .|.||||.|+..|+.++ ++.+++.
T Consensus 112 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~-~g~t~L~~A~~~g~~~~---------v~~Ll~~g~~~~~~~~~g~ 180 (437)
T 1n11_A 112 AGHTPLHIAAREGHVETVLALLEKEAS-QACMTK-KGFTPLHVAAKYGKVRV---------AELLLERDAHPNAAGKNGL 180 (437)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCT-TSCCHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCSSCC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCC-CcCCCC-CCCCHHHHHHHcCCHHH---------HHHHHhCCCCCCCCCCCCC
Confidence 666666666666666666666666655 233333 56666666666666655 3333332
Q ss_pred -----------------hCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHH
Q 039300 149 -----------------LGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELK 211 (534)
Q Consensus 149 -----------------~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 211 (534)
+.+.+..++..+..|.||||+|+..|+.+++++|++.|++.. ..+..|.||||.|+..|+.+
T Consensus 181 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~ 259 (437)
T 1n11_A 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN-AESVQGVTPLHLAAQEGHAE 259 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHCCCHH
Confidence 111223445555566666666666666666666666666543 45667777777777777777
Q ss_pred HHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcc
Q 039300 212 VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKS 291 (534)
Q Consensus 212 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~ 291 (534)
++++|++++++ ++..|..|+||||+|+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|+++ |
T Consensus 260 ~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-g 334 (437)
T 1n11_A 260 MVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPLHVASHYGNIKLVKFLLQH-Q 334 (437)
T ss_dssp HHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCSSCCCHHHHHHHSSCSHHHHHHHHT-T
T ss_pred HHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc---CCCCCCCCCCHHHHHHHcCcHHHHHHHHhc-C
Confidence 77777777776 677777778888888888888888888877665 788888888888888888888888888887 7
Q ss_pred cchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300 292 VNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL 338 (534)
Q Consensus 292 ~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~ 338 (534)
++++.+|. .|.|||++|.. ....+++++|+++|++.+.
T Consensus 335 ad~n~~~~--~g~t~L~~A~~-------~g~~~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 335 ADVNAKTK--LGYSPLHQAAQ-------QGHTDIVTLLLKNGASPNE 372 (437)
T ss_dssp CCTTCCCT--TSCCHHHHHHH-------TTCHHHHHHHHHTTCCSCC
T ss_pred CCCCCCCC--CCCCHHHHHHH-------CChHHHHHHHHHCcCCCCC
Confidence 88888888 88889888887 3456788888888887654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.7e-45 Score=377.18 Aligned_cols=294 Identities=23% Similarity=0.271 Sum_probs=267.2
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|.||||+||..|+.++|++|+++|++++ .+|..|.||||+|+..|+.++|++|+++|++++ ..+.
T Consensus 13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-------------~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~ 78 (437)
T 1n11_A 13 SGLTPLHVASFMGHLPIVKNLLQRGASPN-------------VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAK 78 (437)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSC-------------CSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCT
T ss_pred CCCCHHHHHHHCCCHHHHHHHHHcCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCC
Confidence 38999999999999999999999999887 378899999999999999999999999998875 6789
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD 160 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d 160 (534)
.|.||||+|+..|+.+++++|++++++ ++..+. .|.||||.|+..|+.++ ++.+++.. ...+..+
T Consensus 79 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~-~g~t~L~~A~~~g~~~~---------v~~Ll~~~----~~~~~~~ 143 (437)
T 1n11_A 79 DDQTPLHCAARIGHTNMVKLLLENNAN-PNLATT-AGHTPLHIAAREGHVET---------VLALLEKE----ASQACMT 143 (437)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCT-TCCCHHHHHHHHTCHHH---------HHHHHHTT----CCSCCCC
T ss_pred CCCCHHHHHHHCCCHHHHHHHHhCCCC-CCCCCC-CCCcHHHHHHHcCCHHH---------HHHHHhCC----CCCcCCC
Confidence 999999999999999999999999987 566666 89999999999999998 88888753 4566778
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300 161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240 (534)
Q Consensus 161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 240 (534)
..|.||||+|+..|+.+++++|+++|+++. ..+..|.||||.|+..|+.+++++|++++.+ ++..+..|+||||+|+.
T Consensus 144 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 221 (437)
T 1n11_A 144 KKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS-PHSPAWNGYTPLHIAAK 221 (437)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCC-SCCCCTTCCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCcCCCCCCHHHHHHH
Confidence 889999999999999999999999999865 6788999999999999999999999999988 78889999999999999
Q ss_pred cCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHH
Q 039300 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEV 320 (534)
Q Consensus 241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~ 320 (534)
.|+.+++++|++.+.+ ++..|..|.||||+|+..|+.+++++|+++ +++++..|. .|.|||++|.. .
T Consensus 222 ~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~--~g~t~L~~A~~-------~ 288 (437)
T 1n11_A 222 QNQVEVARSLLQYGGS---ANAESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNK--SGLTPLHLVAQ-------E 288 (437)
T ss_dssp TTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHTT-TCCTTCCCT--TCCCHHHHHHH-------H
T ss_pred cCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHCCCHHHHHHHHhc-CCCCCCCCC--CCCCHHHHHHH-------c
Confidence 9999999999999876 889999999999999999999999999998 789999999 99999999997 4
Q ss_pred HHHhHHHHHHHHhhhccC
Q 039300 321 QKHLTLKALKTAYAKRAL 338 (534)
Q Consensus 321 ~~~~~~~~L~~~ga~~~~ 338 (534)
....+++.|+++|++.+.
T Consensus 289 ~~~~~~~~Ll~~g~~~~~ 306 (437)
T 1n11_A 289 GHVPVADVLIKHGVMVDA 306 (437)
T ss_dssp TCHHHHHHHHHHTCCTTC
T ss_pred CCHHHHHHHHhCCccCCC
Confidence 567788999999887654
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.4e-43 Score=350.10 Aligned_cols=292 Identities=21% Similarity=0.239 Sum_probs=252.7
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccC-CCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRD-IEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d-~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
|+||||.||+.|+.++|++||++|+++|. +| ..|.||||+|+.+|+.++|++|+++|+++. ..+.
T Consensus 25 ~~t~L~~Av~~g~~~~V~~LL~~Gadvn~-------------~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~-~~~~ 90 (337)
T 4g8k_A 25 DNHLLIKAVQNEDVDLVQQLLEGGANVNF-------------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKK 90 (337)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTCCTTC-------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred CChHHHHHHHcCCHHHHHHHHHCCCCCCc-------------cCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchh-hhcc
Confidence 67999999999999999999999999884 44 459999999999999999999999999985 6789
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCC------Chh
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGT------NKD 154 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~------~~~ 154 (534)
.+.+|++.++..+..+++..+++.+.+ ++..+. .|.||+|.|+..++.++ ++.+++.... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d~-~g~t~l~~A~~~~~~~~---------~~~ll~~ga~~~~~~~~~~ 159 (337)
T 4g8k_A 91 NGATPFILAAIAGSVKLLKLFLSKGAD-VNECDF-YGFTAFMEAAVYGKVKA---------LKFLYKRGANVNLRRKTKE 159 (337)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCBCT-TCCBHHHHHHHTTCHHH---------HHHHHHTTCCTTCCCCCC-
T ss_pred CCCchhHHHHhcccchhhHHhhhccch-hhhhcc-CCCCHHHHHHHcCcHHH---------HHHHHHcCCCcchhhcccc
Confidence 999999999999999999999999987 566676 99999999999999998 8888775431 122
Q ss_pred hhhcccCCCCcHHHHHHhCCCHHHHHHHHhh-chhhhcccCCCCCcHHHHHHHcCc----HHHHHHHHHhCCCccccccC
Q 039300 155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEA-SKQLAYKRDCNGATPLHLAAENGE----LKVLKLLINKYPDAIEIRDN 229 (534)
Q Consensus 155 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~d~ 229 (534)
..+..+..|.||||+|+..|+.+++++|++. |+++. ..|..|.||+|.++..+. .+++++|+++|++ ++.+|.
T Consensus 160 ~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n-~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad-~n~~d~ 237 (337)
T 4g8k_A 160 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRGE 237 (337)
T ss_dssp ----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT-CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC-TTCCCG
T ss_pred ccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC-ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC-CCCcCC
Confidence 3345567899999999999999999999965 77754 788999999998876543 4688999999999 899999
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhC-CcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHH
Q 039300 230 SDRSILHVAAKHGNWNIVSFILKS-PEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLE 308 (534)
Q Consensus 230 ~g~t~Lh~A~~~~~~~~~~~Ll~~-~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~ 308 (534)
.|+||||+|+..|+.++++.|++. +.+ +|.+|.+|+||||+|++.|+.+++++|+++ |+|+| +.|||+
T Consensus 238 ~g~t~L~~a~~~~~~~~v~~Ll~~~~~~---vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GAd~n-------~~~~L~ 306 (337)
T 4g8k_A 238 RGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKR-GASTD-------CGDLVM 306 (337)
T ss_dssp GGCCHHHHHHHTTCHHHHHHHHTSTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHTT-SCSST-------TCCHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHHHHhcCCc---ccCcCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCC-------CCCHHH
Confidence 999999999999999999999986 444 899999999999999999999999999998 78774 457999
Q ss_pred HhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300 309 IDEMTRADVTEVQKHLTLKALKTAYAKRAL 338 (534)
Q Consensus 309 ~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~ 338 (534)
+|.. ..+.+++++|+++||+.+.
T Consensus 307 ~A~~-------~~~~~iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 307 TARR-------NYDHSLVKVLLSHGAKEDF 329 (337)
T ss_dssp HHHH-------TTCHHHHHHHHHTTCCC--
T ss_pred HHHH-------cCCHHHHHHHHHCcCCCCC
Confidence 9998 3457899999999998765
No 4
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=7.4e-43 Score=336.01 Aligned_cols=264 Identities=20% Similarity=0.240 Sum_probs=240.5
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA 81 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~ 81 (534)
|+||||.|++.|+.++|++|++.|++++. ..+..|.||||+|+..|+.+++++|+++|+++. ..+..
T Consensus 5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~ 71 (285)
T 1wdy_A 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNF------------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKN 71 (285)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTC------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred cchHHHHHHHcCCHHHHHHHHHcCCCccc------------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCC
Confidence 78999999999999999999999998774 237889999999999999999999999998885 67899
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcc--
Q 039300 82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRL-- 159 (534)
Q Consensus 82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~-- 159 (534)
|.||||+|+..|+.+++++|++++++ ++..+. .|.||||.|+..++.++ ++.+++... .++..
T Consensus 72 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~g~t~L~~A~~~~~~~~---------~~~Ll~~g~----~~~~~~~ 136 (285)
T 1wdy_A 72 GATPFLLAAIAGSVKLLKLFLSKGAD-VNECDF-YGFTAFMEAAVYGKVKA---------LKFLYKRGA----NVNLRRK 136 (285)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCT-TCCBHHHHHHHTTCHHH---------HHHHHHTTC----CTTCCCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCc-ccCCHHHHHHHhCCHHH---------HHHHHHhCC----Ccccccc
Confidence 99999999999999999999999987 566666 89999999999999998 888887643 33333
Q ss_pred --------cCCCCcHHHHHHhCCCHHHHHHHHhh-chhhhcccCCCCCcHHHHHHHcCc----HHHHHHHHHhCCCcccc
Q 039300 160 --------DWHQRNPLHYAAASGNVQMVQRLLEA-SKQLAYKRDCNGATPLHLAAENGE----LKVLKLLINKYPDAIEI 226 (534)
Q Consensus 160 --------d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~ 226 (534)
+..|.||||.|+..|+.+++++|++. |.++. ..|..|.||||.|+..++ .+++++|++.+.+ ++.
T Consensus 137 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~ 214 (285)
T 1wdy_A 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN-ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNV 214 (285)
T ss_dssp CCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT-CCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSC
T ss_pred cHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCC
Confidence 78899999999999999999999998 77754 778899999999999999 9999999999998 899
Q ss_pred ccCCCCcHHHHHHhcCCHHHHHHHHh-CCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccc
Q 039300 227 RDNSDRSILHVAAKHGNWNIVSFILK-SPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299 (534)
Q Consensus 227 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~-~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~ 299 (534)
+|..|+||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..++.+++++|+++ |++++.+|.
T Consensus 215 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~-Ga~~~~~d~ 284 (285)
T 1wdy_A 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIE---INDTDSDGKTALLLAVELKLKKIAELLCKR-GASTDCGDL 284 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SSCSCCSSC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhccCCC---ccccCCCCCcHHHHHHHcCcHHHHHHHHHc-CCCCCcccc
Confidence 99999999999999999999999999 6666 899999999999999999999999999998 899988764
No 5
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.3e-41 Score=334.73 Aligned_cols=274 Identities=19% Similarity=0.232 Sum_probs=244.6
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhc-CccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 2 DETPLHIAARIGDHAIVSEIMKY-VPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
|.|+||.||+.|+.+.|+.|+.. +.+++ .+|..|.||||+|+..|+.++|++|+++|+++. ..|.
T Consensus 24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~ 89 (351)
T 3utm_A 24 KKDELLEAARSGNEEKLMALLTPLNVNCH-------------ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDK 89 (351)
T ss_dssp HHHHHHHHHHHTCHHHHHHHCCTTTTTCC-------------CSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred cchhHHHHHHcCCHHHHHHHHHhcCCCcc-------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCC
Confidence 57899999999999999999976 55544 589999999999999999999999999999885 6789
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD 160 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d 160 (534)
.|.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+..++.++ ++.|++.. ..++..+
T Consensus 90 ~g~t~L~~A~~~g~~~iv~~Ll~~g~~-~~~~~~-~g~t~L~~A~~~~~~~~---------v~~Ll~~g----~~~~~~~ 154 (351)
T 3utm_A 90 GGLVPLHNACSYGHYEVTELLLKHGAC-VNAMDL-WQFTPLHEAASKNRVEV---------CSLLLSHG----ADPTLVN 154 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-TCCCHHHHHHHTTCHHH---------HHHHHHTT----CCTTCCC
T ss_pred CCCcHHHHHHHCCCHHHHHHHHHCCCC-CCCCCC-CCCCHHHHHHHcCCHHH---------HHHHHHcC----CCCcccc
Confidence 999999999999999999999999987 566665 89999999999999999 88888763 5678888
Q ss_pred CCCCcHHHHH---------------------HhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc---CcHHHHHHH
Q 039300 161 WHQRNPLHYA---------------------AASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN---GELKVLKLL 216 (534)
Q Consensus 161 ~~g~tpL~~A---------------------~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~~v~~L 216 (534)
..|.||++.| +..++.+.++.++..+... ...+..|.||||.|+.. +..+++++|
T Consensus 155 ~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~L 233 (351)
T 3utm_A 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN-FKQPQSHETALHCAVASLHPKRKQVAELL 233 (351)
T ss_dssp TTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHH
T ss_pred CCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHH
Confidence 9999987764 4566677777777666543 35677899999999999 668999999
Q ss_pred HHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhh
Q 039300 217 INKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA 296 (534)
Q Consensus 217 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~ 296 (534)
++.+.+ ++.+|..|+||||+|+.+|+.+++++|+++|++ +|.+|..|+||||+|+..|+.+++++|+++ |+|++.
T Consensus 234 l~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-gad~~~ 308 (351)
T 3utm_A 234 LRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK---MNALDSLGQTALHRAALAGHLQTCRLLLSY-GSDPSI 308 (351)
T ss_dssp HHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHT-TCCTTC
T ss_pred HHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHc-CCCCCC
Confidence 999999 899999999999999999999999999999887 999999999999999999999999999998 899999
Q ss_pred ccccCCCCChHHHhHh
Q 039300 297 KNRSARNNTTLEIDEM 312 (534)
Q Consensus 297 ~n~~~~g~t~l~~a~~ 312 (534)
+|. .|.||+++|.+
T Consensus 309 ~~~--~g~tal~~a~~ 322 (351)
T 3utm_A 309 ISL--QGFTAAQMGNE 322 (351)
T ss_dssp CCT--TSCCHHHHSCH
T ss_pred cCC--CCCChhhhhhH
Confidence 999 99999999965
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.3e-41 Score=324.46 Aligned_cols=264 Identities=21% Similarity=0.249 Sum_probs=241.5
Q ss_pred CCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHH
Q 039300 47 EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVM 126 (534)
Q Consensus 47 ~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~ 126 (534)
+|+||||.|++.|+.+++++|++.|+++....+..|.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+.
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~-~g~t~L~~A~~ 81 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKK-NGATPFLLAAI 81 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-TCCCHHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCC-CCCCHHHHHHH
Confidence 5789999999999999999999999998766688899999999999999999999999987 566665 89999999999
Q ss_pred hcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhccc---------CCCC
Q 039300 127 RQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKR---------DCNG 197 (534)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~---------~~~g 197 (534)
.++.++ ++.+++. +..++..|..|.||||+|+..|+.+++++|++.|+++.... +..|
T Consensus 82 ~~~~~~---------v~~Ll~~----g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g 148 (285)
T 1wdy_A 82 AGSVKL---------LKLFLSK----GADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGG 148 (285)
T ss_dssp HTCHHH---------HHHHHHT----TCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred cCCHHH---------HHHHHHc----CCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCC
Confidence 999998 8888875 35688899999999999999999999999999998765321 7789
Q ss_pred CcHHHHHHHcCcHHHHHHHHHh-CCCccccccCCCCcHHHHHHhcCC----HHHHHHHHhCCcccccccccCCCCCcHHH
Q 039300 198 ATPLHLAAENGELKVLKLLINK-YPDAIEIRDNSDRSILHVAAKHGN----WNIVSFILKSPEMENLINLIDRNGNTSLH 272 (534)
Q Consensus 198 ~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~----~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh 272 (534)
.||||.|+..|+.+++++|++. +.+ ++..|..|+||||+|+..++ .+++++|++.+++ ++.+|..|+||||
T Consensus 149 ~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~---~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 149 ATALMDAAEKGHVEVLKILLDEMGAD-VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGKTPLI 224 (285)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSCCHHH
T ss_pred CcHHHHHHHcCCHHHHHHHHHhcCCC-CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC---CCCcCCCCCcHHH
Confidence 9999999999999999999998 665 89999999999999999999 9999999999887 8999999999999
Q ss_pred HHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300 273 LAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL 338 (534)
Q Consensus 273 ~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~ 338 (534)
+|+..|+.+++++|++..|++++.+|. .|.|||++|.. ....+++++|+++|++...
T Consensus 225 ~A~~~~~~~~v~~Ll~~~g~~~~~~~~--~g~t~l~~A~~-------~~~~~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 225 LAVEKKHLGLVQRLLEQEHIEINDTDS--DGKTALLLAVE-------LKLKKIAELLCKRGASTDC 281 (285)
T ss_dssp HHHHTTCHHHHHHHHHSSSCCTTCCCT--TSCCHHHHHHH-------TTCHHHHHHHHHHSSCSCC
T ss_pred HHHHcCCHHHHHHHHhccCCCccccCC--CCCcHHHHHHH-------cCcHHHHHHHHHcCCCCCc
Confidence 999999999999999977999999999 99999999998 4567899999999998754
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.5e-41 Score=323.11 Aligned_cols=268 Identities=16% Similarity=0.206 Sum_probs=200.2
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|+|+||+||..|+.+.++.++..++..- .........++.+|..|+||||+|+..|+.++|++|++.|++++ ..|.
T Consensus 14 ~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~~~ 90 (285)
T 3d9h_A 14 LVPRGSHMASMDGKQGGMDGSKPAGPRDF--PGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITA 90 (285)
T ss_dssp ----------------------------C--CSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSC-EECT
T ss_pred HHHHHHHHHhhcCCCCCcccCCCCccccc--cchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCC
Confidence 37899999999999888888877654311 01111123356789999999999999999999999999998875 6789
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD 160 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d 160 (534)
.|.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+..++.++ ++.|++... .++. +
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~-~g~t~L~~A~~~~~~~~---------v~~Ll~~g~----~~~~-~ 154 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTA-DWHTPLFNACVSGSWDC---------VNLLLQHGA----SVQP-E 154 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC-SSCCCT-TCCCHHHHHHHHTCHHH---------HHHHHHTTC----CSSC-S
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCC-CCCCCC-CCCCHHHHHHHcCHHHH---------HHHHHHCCC----CCCC-C
Confidence 999999999999999999999999987 566666 89999999999999988 888887643 3333 3
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300 161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240 (534)
Q Consensus 161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 240 (534)
..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++.+++ ++ .|..|+||||+|+.
T Consensus 155 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~ 231 (285)
T 3d9h_A 155 SDLASPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVR 231 (285)
T ss_dssp CTTSCHHHHHHHHTCHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHH
Confidence 458999999999999999999999998765 6788999999999999999999999999888 56 48889999999999
Q ss_pred cCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchh
Q 039300 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIR 295 (534)
Q Consensus 241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~ 295 (534)
.|+.+++++|++.|++ ++.+|.+|+||||+|+ ++.+++++|+++.++++.
T Consensus 232 ~~~~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 232 TASEELACLLMDFGAD---TQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp TTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred cCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 9999999999999877 8899999999999998 456899999988676654
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=8.2e-41 Score=317.79 Aligned_cols=250 Identities=17% Similarity=0.209 Sum_probs=160.2
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|+||||+||..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|++++ ..|.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~ 67 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN-------------IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTA 67 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS-------------CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCC
Confidence 48999999999999999999999999877 488999999999999999999999999998885 6789
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD 160 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d 160 (534)
.|.||||+|+..|+.+++++|++++++. +..+ +|.||||.|+..++.++ ++.+++.. .+++..|
T Consensus 68 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~--~g~t~L~~A~~~~~~~~---------v~~Ll~~g----~~~~~~~ 131 (261)
T 2xai_A 68 DWHTPLFNACVSGSWDCVNLLLQHGASV-QPES--DLASPIHEAARRGHVEC---------VNSLIAYG----GNIDHKI 131 (261)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCSC--TTCCHHHHHHHTTCHHH---------HHHHHHTT----CCTTCCB
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCC--CCCCHHHHHHHcCcHHH---------HHHHHHcC----CCCCcCC
Confidence 9999999999999999999999998872 2211 45555555555555554 44444431 3344455
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300 161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240 (534)
Q Consensus 161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 240 (534)
..|.||||+|+..|+.+++++|++.|++++ .+..|.||||+|+..|+.+++++|++.|++ ++.+|..|+||+|+|+.
T Consensus 132 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~ 208 (261)
T 2xai_A 132 SHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPP 208 (261)
T ss_dssp TTTBCHHHHHHHTTCHHHHHHHHHHTCCTT--CCBTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCT
T ss_pred CCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCChHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCChhhhccc
Confidence 555555555555555555555555555443 244455555555555555555555555554 45555555555555553
Q ss_pred cCCHHHHHHHHhCCccc-----ccccccCCCCCcHHHHHHhcCChhHHHH
Q 039300 241 HGNWNIVSFILKSPEME-----NLINLIDRNGNTSLHLAAMGLHSDVVFT 285 (534)
Q Consensus 241 ~~~~~~~~~Ll~~~~~~-----~~~~~~d~~g~t~Lh~A~~~~~~~~v~~ 285 (534)
++ +++++|++.+... ..++.+|..|+||+|.|.+...++.++.
T Consensus 209 ~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~ 256 (261)
T 2xai_A 209 ES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQ 256 (261)
T ss_dssp TC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHH
T ss_pred cc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHH
Confidence 22 3445555443321 1133444455555555554444444433
No 9
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=8.1e-41 Score=333.97 Aligned_cols=279 Identities=16% Similarity=0.152 Sum_probs=218.5
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA 81 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~ 81 (534)
|.||||+||..|+.++|++|+++|++++ .+|..|.||||+|+..|+.++|++|+++|++.. +.+
T Consensus 20 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~---~~~ 83 (364)
T 3ljn_A 20 NMEKIHVAARKGQTDEVRRLIETGVSPT-------------IQNRFGCTALHLACKFGCVDTAKYLASVGEVHS---LWH 83 (364)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCC---CBT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCcc-------------ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcc---ccC
Confidence 5688888888888888888888887776 377888888888888888888888888887543 457
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300 82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161 (534)
Q Consensus 82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 161 (534)
|.||||+|+..|+.+++++|++.+.. .|..+-........... .....+..|.
T Consensus 84 g~t~L~~A~~~g~~~~v~~Ll~~~~~--------~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 136 (364)
T 3ljn_A 84 GQKPIHLAVMANKTDLVVALVEGAKE--------RGQMPESLLNECDEREV-------------------NEIGSHVKHC 136 (364)
T ss_dssp TBCHHHHHHHTTCHHHHHHHHHHHHH--------HTCCHHHHHTCCCCCCE-------------------EEETTEEEEE
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhccc--------cCCCHHHHHhhcchHhh-------------------hhhccccCCC
Confidence 88888888888888888888887332 11111111111111110 0123456888
Q ss_pred CCCcHHHHHHhCC--CHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCc----cccccCCCCcHH
Q 039300 162 HQRNPLHYAAASG--NVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDA----IEIRDNSDRSIL 235 (534)
Q Consensus 162 ~g~tpL~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~g~t~L 235 (534)
.|.||||+|+..| +.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++.+++. ++..|..|+|||
T Consensus 137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L 215 (364)
T 3ljn_A 137 KGQTALHWCVGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215 (364)
T ss_dssp SCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT
T ss_pred CCCCHHHHHHHcCCchHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH
Confidence 9999999999999 9999999999999865 77899999999999999999999999998874 788999999999
Q ss_pred HHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhcc----------ccCCCCC
Q 039300 236 HVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN----------RSARNNT 305 (534)
Q Consensus 236 h~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n----------~~~~g~t 305 (534)
|+|+..|+.+++++|+++|++ +|.+|.+|.||||+|+..|+.+++++|+++ +++++..+ .+..+.|
T Consensus 216 ~~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (364)
T 3ljn_A 216 HWAILINWEDVAMRFVEMGID---VNMEDNEHTVPLYLSVRAAMVLLTKELLQK-TDVFLIQACPYHNGTTVLPDRVVWL 291 (364)
T ss_dssp HHHHTTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTCCHHHHHHHHHH-SCHHHHHTCTTBSSSSBCGGGCCCC
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHhChHHHHHHHHHc-CCchhhhcCcccCcccccccccccc
Confidence 999999999999999999887 899999999999999999999999999998 56654432 2227888
Q ss_pred hHHHhHhhhhchHHHHHHhHHHHHHHHhh
Q 039300 306 TLEIDEMTRADVTEVQKHLTLKALKTAYA 334 (534)
Q Consensus 306 ~l~~a~~~~~~~~~~~~~~~~~~L~~~ga 334 (534)
|+..|... .....+.++|.+...
T Consensus 292 ~l~~aa~~------~~~~~v~~ll~~~~~ 314 (364)
T 3ljn_A 292 DFVPAAAD------PSKQEVLQLLQEKLD 314 (364)
T ss_dssp TTSCSSCC------HHHHHHHHHHHHHHH
T ss_pred cchhhhhc------cCHHHHHHHHHHHHH
Confidence 88887762 334455555554433
No 10
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=9.5e-40 Score=314.03 Aligned_cols=259 Identities=16% Similarity=0.178 Sum_probs=182.1
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|+||||+||+.|+.++|++|+++|++.+ .++.+|..|.||||+|+..|+.++|++|+++|+++. ..+.
T Consensus 8 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~----------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~ 76 (282)
T 1oy3_D 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHE----------YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAER 76 (282)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHHHTTSG----------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcc----------cccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCC
Confidence 48999999999999999999999988733 244689999999999999999999999999999985 6789
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD 160 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d 160 (534)
.|.||||+|+..|+.+++++|+++++........ +. +. .......
T Consensus 77 ~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~----~~-------------------------~~------~~~~~~~ 121 (282)
T 1oy3_D 77 GGHTALHLACRVRAHTCACVLLQPRPSHPRDASD----TY-------------------------LT------QSQDCTP 121 (282)
T ss_dssp TSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------------------
T ss_pred CCCCHHHHHHHcCCcchhHhhhccCCCCchhhHH----HH-------------------------hh------cccccCc
Confidence 9999999999999999999999999873211110 00 00 0011122
Q ss_pred CCCCcHHHHHHhCCCHH-HHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccC-CCCcHHHHH
Q 039300 161 WHQRNPLHYAAASGNVQ-MVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN-SDRSILHVA 238 (534)
Q Consensus 161 ~~g~tpL~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A 238 (534)
..+.++++.++..+... ....+...+.++ +..+..|.||||+|+..|+.+++++|++++++ ++..+. .|+||||+|
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A 199 (282)
T 1oy3_D 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLA 199 (282)
T ss_dssp ----------------------CCCGGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHH
T ss_pred chhcchhhhccccccchhhhhhhhhhhhcC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHH
Confidence 33556666666554433 333444445544 36788888999999999999999999988888 666664 488999999
Q ss_pred HhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhh
Q 039300 239 AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMT 313 (534)
Q Consensus 239 ~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~ 313 (534)
+.+|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++ |++++.+|. .|.||+++|...
T Consensus 200 ~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~a~~~ 268 (282)
T 1oy3_D 200 VEAQAASVLELLLKAGAD---PTARMYGGRTPLGSALLRPNPILARLLRAH-GAPEPEDGG--DKLSPCSSSGSD 268 (282)
T ss_dssp HHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHTSSCHHHHHHHHHT-TCCCCCCC---------------
T ss_pred HHcCCHHHHHHHHHcCCC---CcccccCCCCHHHHHHHcCCcHHHHHHHHc-CCCcCcCCC--cccccccccCCc
Confidence 999999999999988876 888888999999999999999999999888 788998888 899999988764
No 11
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=5.4e-39 Score=317.23 Aligned_cols=260 Identities=19% Similarity=0.184 Sum_probs=229.2
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA 81 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~ 81 (534)
|+||||+||..|+.++|++|+++|++++. +|..+.+|++.++..++.+++..+++.++++. ..|..
T Consensus 59 g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~ 124 (337)
T 4g8k_A 59 GWTPLHNAVQMSREDIVELLLRHGADPVL-------------RKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFY 124 (337)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTC-------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTT
T ss_pred CcCHHHHHHHcCCHHHHHHHHHcCCchhh-------------hccCCCchhHHHHhcccchhhHHhhhccchhh-hhccC
Confidence 89999999999999999999999999884 88999999999999999999999999998885 67999
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCc---------ccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCC
Q 039300 82 YQTPLSIAIDVRLNDIACFIIDKSSESL---------NATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTN 152 (534)
Q Consensus 82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 152 (534)
|.||||+|+..|+.+++++|+++|++.. ...+. .|.||||+|+..|+.++ ++.|++...
T Consensus 125 g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~-~g~T~L~~A~~~g~~~~---------v~~LL~~~g-- 192 (337)
T 4g8k_A 125 GFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK-GGATALMDAAEKGHVEV---------LKILLDEMG-- 192 (337)
T ss_dssp CCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTT-CSCCHHHHHHHHTCHHH---------HHHHHHHSC--
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccC-CCCcHHHHHHHCCCHHH---------HHHHHhccC--
Confidence 9999999999999999999999998721 11222 68999999999999999 888887644
Q ss_pred hhhhhcccCCCCcHHHHHHhCCC----HHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc
Q 039300 153 KDLINRLDWHQRNPLHYAAASGN----VQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD 228 (534)
Q Consensus 153 ~~~~~~~d~~g~tpL~~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d 228 (534)
.+++..|..|.|++|.++..+. .+++++|+++|++++ .+|..|.||||+|+..|+.++++.|++.+...++.+|
T Consensus 193 -ad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n-~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d 270 (337)
T 4g8k_A 193 -ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTD 270 (337)
T ss_dssp -CCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT-CCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBC
T ss_pred -CCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcC
Confidence 7789999999999998876543 468899999999865 7889999999999999999999999987544499999
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhcc
Q 039300 229 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298 (534)
Q Consensus 229 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n 298 (534)
..|+||||+|+++|+.+++++|+++|++ +| +.||||+|+..|+.+++++|+++ |+++|...
T Consensus 271 ~~G~TpL~~A~~~g~~~iv~~Ll~~GAd---~n-----~~~~L~~A~~~~~~~iv~~Ll~~-GA~~d~~~ 331 (337)
T 4g8k_A 271 SDGKTALLLAVELKLKKIAELLCKRGAS---TD-----CGDLVMTARRNYDHSLVKVLLSH-GAKEDFHP 331 (337)
T ss_dssp TTSCBHHHHHHHTTCHHHHHHHHTTSCS---ST-----TCCHHHHHHHTTCHHHHHHHHHT-TCCC----
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCC---CC-----CCCHHHHHHHcCCHHHHHHHHHC-cCCCCCCC
Confidence 9999999999999999999999999986 54 45699999999999999999998 79988643
No 12
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-40 Score=331.13 Aligned_cols=257 Identities=20% Similarity=0.299 Sum_probs=222.3
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccC-CCCCcHhHHHHHhCcHHHHHHHH--------HcC
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRD-IEGNTPLHNVVTKKHKRVIRILV--------EKD 71 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d-~~g~TpLh~A~~~g~~e~v~~Ll--------~~g 71 (534)
.|+||||.||..|+ +++++|+.. +++ .+| ..|.||||+|+.+|+.+++++|+ +.|
T Consensus 93 ~g~t~L~~Aa~~~~-~~~~~L~~~--~~n-------------~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g 156 (373)
T 2fo1_E 93 ESPIKLHTEAAGSY-AITEPITRE--SVN-------------IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG 156 (373)
T ss_dssp -CCCHHHHHHHSSS-CCCSCCSTT--TTT-------------TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC
T ss_pred CCccHHHHHhcCCc-hHHHHhccc--ccc-------------ccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC
Confidence 38899999999654 777777643 333 466 78999999999999998888776 789
Q ss_pred CCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCC
Q 039300 72 SAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGT 151 (534)
Q Consensus 72 ~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~ 151 (534)
++++ ..|..|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++.++ ++.|++...
T Consensus 157 a~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~-~~~~~~-~g~t~L~~A~~~g~~~~---------v~~Ll~~~~- 223 (373)
T 2fo1_E 157 ADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGAD-PTIYNK-SERSALHQAAANRDFGM---------MVYMLNSTK- 223 (373)
T ss_dssp CCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCT-TCCCHHHHHHHTTCHHH---------HHHHTTSHH-
T ss_pred CCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCC-CcccCC-CCCCHHHHHHHCCCHHH---------HHHHHhcCc-
Confidence 8875 6789999999999999999999999999998 566666 89999999999999988 665554320
Q ss_pred ChhhhhcccCCCCcHHHHHHhCC---CHHHHHHHHhhchhhhc-------ccCCCCCcHHHHHHHcCcHHHHHHHHHhCC
Q 039300 152 NKDLINRLDWHQRNPLHYAAASG---NVQMVQRLLEASKQLAY-------KRDCNGATPLHLAAENGELKVLKLLINKYP 221 (534)
Q Consensus 152 ~~~~~~~~d~~g~tpL~~A~~~g---~~~~v~~Ll~~~~~~~~-------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 221 (534)
.+.+++..|..|.||||+|+..+ +.+++++|++.|+++.. ..|..|.||||+|+..|+.+++++|++.++
T Consensus 224 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 303 (373)
T 2fo1_E 224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303 (373)
T ss_dssp HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC
T ss_pred cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC
Confidence 01568888999999999999988 89999999999987653 256789999999999999999999999884
Q ss_pred CccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300 222 DAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289 (534)
Q Consensus 222 ~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 289 (534)
..++.+|..|+||||+|+.+|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++
T Consensus 304 ~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad---~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS---VEAVDATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 44899999999999999999999999999999887 899999999999999999999999999987
No 13
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.5e-39 Score=313.00 Aligned_cols=259 Identities=17% Similarity=0.127 Sum_probs=204.8
Q ss_pred cCCCCCcHhHHHHHhCcHHHHHHHHHcCC----------CCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCC
Q 039300 44 RDIEGNTPLHNVVTKKHKRVIRILVEKDS----------APSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATR 113 (534)
Q Consensus 44 ~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~----------~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~ 113 (534)
...+|.|+||+|+..|+.+.+..++..++ +.....|..|.||||+|+..|+.+++++|++.+++ ++..+
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~~ 89 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWA-VNIIT 89 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCC-SCEEC
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcC
Confidence 34679999999999999877777665532 23345788999999999999999999999999987 66667
Q ss_pred CCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhccc
Q 039300 114 LPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKR 193 (534)
Q Consensus 114 ~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 193 (534)
. .|.||||+|+..|+.++ ++.|++. +.+++..|..|.||||+|+..|+.+++++|++.|+++. .
T Consensus 90 ~-~g~t~L~~A~~~g~~~~---------v~~Ll~~----ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~ 153 (285)
T 3d9h_A 90 A-DHVSPLHEACLGGHLSC---------VKILLKH----GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--P 153 (285)
T ss_dssp T-TCCCHHHHHHHTTCHHH---------HHHHHHT----TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--C
T ss_pred C-CCCCHHHHHHHCCcHHH---------HHHHHHC----CCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--C
Confidence 6 89999999999999999 8888875 36788999999999999999999999999999999865 3
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHH
Q 039300 194 DCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273 (534)
Q Consensus 194 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~ 273 (534)
+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+.+|+.+++++|++.+++ ++ .|..|+||||+
T Consensus 154 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~-~~~~g~t~L~~ 228 (285)
T 3d9h_A 154 ESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGAD---VN-QGKGQDSPLHA 228 (285)
T ss_dssp SCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCC---TT-CCBTTBCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCC---CC-CCCCCCCHHHH
Confidence 45699999999999999999999999998 899999999999999999999999999999886 66 48999999999
Q ss_pred HHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHH-hhhc
Q 039300 274 AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTA-YAKR 336 (534)
Q Consensus 274 A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~-ga~~ 336 (534)
|+..++.+++++|+++ |+|++.+|. .|+||+++|.. +..++++|+++ |++.
T Consensus 229 A~~~~~~~~v~~Ll~~-gad~~~~d~--~g~t~l~~A~~---------~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 229 VVRTASEELACLLMDF-GADTQAKNA--EGKRPVELVPP---------ESPLAQLFLEREGASL 280 (285)
T ss_dssp HHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCGGGGSCT---------TSHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHC-CCCCCCcCC--CCCCHHHHhcC---------ccHHHHHHHHhhccCC
Confidence 9999999999999998 899999999 99999999985 24677888887 5554
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.2e-39 Score=308.18 Aligned_cols=231 Identities=19% Similarity=0.240 Sum_probs=180.9
Q ss_pred hcccCCCCCcHhHHHHHhC-------------cHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 039300 41 FGMRDIEGNTPLHNVVTKK-------------HKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSE 107 (534)
Q Consensus 41 l~~~d~~g~TpLh~A~~~g-------------~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 107 (534)
++.+|.+|.||||+|+..| +.+++++|+++|+++....|..|.||||+|+..|+.+++++|+++|++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 4568999999999999987 899999999999999877899999999999999999999999999987
Q ss_pred CcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhch
Q 039300 108 SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASK 187 (534)
Q Consensus 108 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 187 (534)
++..+. .|.||||+|+..++.++ ++.+++... ..++..+..|.||||+|+..|+.+++++|++.|+
T Consensus 83 -~~~~~~-~g~t~L~~A~~~~~~~~---------v~~Ll~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~ 148 (253)
T 1yyh_A 83 -ANIQDN-MGRTPLHAAVSADAQGV---------FQILIRNRA---TDLDARMHDGTTPLILAARLAVEGMLEDLINSHA 148 (253)
T ss_dssp -TTCCCT-TSCCHHHHHHHHTCHHH---------HHHHHHSTT---SCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC
T ss_pred -CCCCCC-CCCCHHHHHHHcCCHHH---------HHHHHHcCC---CCccccCCCCCcHHHHHHHcChHHHHHHHHHcCC
Confidence 566666 89999999999999999 888888654 4688899999999999999999999999999999
Q ss_pred hhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCC
Q 039300 188 QLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNG 267 (534)
Q Consensus 188 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g 267 (534)
++. ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|+++|++ ++.+|..|
T Consensus 149 ~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g 223 (253)
T 1yyh_A 149 DVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN---RDITDHMD 223 (253)
T ss_dssp CTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTC
T ss_pred CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---ccccccCC
Confidence 865 6788999999999999999999999999999 899999999999999999999999999999987 89999999
Q ss_pred CcHHHHHHhcCChhHHHHhhhCc
Q 039300 268 NTSLHLAAMGLHSDVVFTLSRHK 290 (534)
Q Consensus 268 ~t~Lh~A~~~~~~~~v~~Ll~~~ 290 (534)
+||||+|+.+|+.+++++|....
T Consensus 224 ~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 224 RLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp CCHHHHHHHTTCHHHHHHHHC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHHh
Confidence 99999999999999999998763
No 15
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-38 Score=316.60 Aligned_cols=280 Identities=19% Similarity=0.204 Sum_probs=222.6
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|+||||+||..|+.++|++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+++. ..|.
T Consensus 57 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~ 122 (351)
T 3utm_A 57 RKSTPLHLAAGYNRVRIVQLLLQHGADVH-------------AKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDL 122 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCC-------------ccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCC
Confidence 48999999999999999999999999887 488999999999999999999999999998885 6789
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHH---------HHHHHHHhCC
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQF---------IDIMVKILGT 151 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~---------~~~ll~~~~~ 151 (534)
.|.||||+|+..|+.+++++|++++++ ++..+. .|.++++.++..+..+.......... ...+... ..
T Consensus 123 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~ 199 (351)
T 3utm_A 123 WQFTPLHEAASKNRVEVCSLLLSHGAD-PTLVNC-HGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKT-LA 199 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-TT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC-CccccC-CCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHH-HH
Confidence 999999999999999999999999988 555665 89999999876655444211100000 1111111 11
Q ss_pred ChhhhhcccCCCCcHHHHHHhC---CCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc
Q 039300 152 NKDLINRLDWHQRNPLHYAAAS---GNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD 228 (534)
Q Consensus 152 ~~~~~~~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d 228 (534)
........+..|.||||+|+.. +..+++++|++.|+++. .+|..|.||||+|+..|+.+++++|++++++ ++.+|
T Consensus 200 ~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d 277 (351)
T 3utm_A 200 LEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN-EKNKDFMTPLHVAAERAHNDVMEVLHKHGAK-MNALD 277 (351)
T ss_dssp TCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCC
T ss_pred hhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcC
Confidence 1223344677899999999999 56899999999999865 6788999999999999999999999999999 89999
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHH
Q 039300 229 NSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLE 308 (534)
Q Consensus 229 ~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~ 308 (534)
..|+||||+|+.+|+.+++++|+++|++ ++.+|..|+||+|+| ..+++++|.+... .... .+.+++.
T Consensus 278 ~~g~t~L~~A~~~~~~~~v~~Ll~~gad---~~~~~~~g~tal~~a----~~~~~~~l~~~~~----~~~~--~~~~~l~ 344 (351)
T 3utm_A 278 SLGQTALHRAALAGHLQTCRLLLSYGSD---PSIISLQGFTAAQMG----NEAVQQILSESTP----MRTS--DVDYRLL 344 (351)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHS----CHHHHHHHHHC-------------------
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCChhhhh----hHHHHHHHHhccc----cccC--cceeehh
Confidence 9999999999999999999999999987 899999999999998 5678888887643 2233 5667777
Q ss_pred HhHh
Q 039300 309 IDEM 312 (534)
Q Consensus 309 ~a~~ 312 (534)
.|..
T Consensus 345 ~A~~ 348 (351)
T 3utm_A 345 EASK 348 (351)
T ss_dssp ----
T ss_pred hhhc
Confidence 6665
No 16
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=302.99 Aligned_cols=240 Identities=17% Similarity=0.206 Sum_probs=214.2
Q ss_pred CCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHH
Q 039300 47 EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVM 126 (534)
Q Consensus 47 ~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~ 126 (534)
+|+||||+|+..|+.+++++|+++|++++ ..|.+|.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~-~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGAQ-VNGVTA-DWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCC-CCCCHHHHHHH
Confidence 58999999999999999999999998875 6789999999999999999999999999987 566666 89999999999
Q ss_pred hcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHH
Q 039300 127 RQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAE 206 (534)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 206 (534)
.++.++ ++.+++... .++ .+..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+.
T Consensus 79 ~~~~~~---------v~~Ll~~g~----~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 143 (261)
T 2xai_A 79 SGSWDC---------VNLLLQHGA----SVQ-PESDLASPIHEAARRGHVECVNSLIAYGGNID-HKISHLGTPLYLACE 143 (261)
T ss_dssp HTCHHH---------HHHHHHTTC----CSS-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCBTTTBCHHHHHHH
T ss_pred cCCHHH---------HHHHHHCCC----CCC-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHH
Confidence 999999 888888643 333 34569999999999999999999999999865 678899999999999
Q ss_pred cCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHh
Q 039300 207 NGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL 286 (534)
Q Consensus 207 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 286 (534)
.|+.+++++|++.+++ ++. |..|+||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+..+ ++++.|
T Consensus 144 ~~~~~~v~~Ll~~g~~-~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~tpl~~A~~~~--~~~~~l 216 (261)
T 2xai_A 144 NQQRACVKKLLESGAD-VNQ-GKGQDSPLHAVARTASEELACLLMDFGAD---TQAKNAEGKRPVELVPPES--PLAQLF 216 (261)
T ss_dssp TTCHHHHHHHHHHTCC-TTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGSCTTC--THHHHH
T ss_pred hCCHHHHHHHHHcCCC-CCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCChhhhccccc--cHHHHH
Confidence 9999999999999998 664 88999999999999999999999999887 8999999999999999654 588999
Q ss_pred hhCcc-------cchhhccccCCCCChHHHhHhh
Q 039300 287 SRHKS-------VNIRAKNRSARNNTTLEIDEMT 313 (534)
Q Consensus 287 l~~~~-------~~~~~~n~~~~g~t~l~~a~~~ 313 (534)
++..+ .+++.+|. .|.||++.+...
T Consensus 217 l~~~~~~~l~~~~~~~~r~~--~g~t~l~~~~~~ 248 (261)
T 2xai_A 217 LEREGPPSLMQLCRLRIRKC--FGIQQHHKITKL 248 (261)
T ss_dssp HHC-CCCCHHHHHHHHHHTT--SCTTCGGGGGGS
T ss_pred HhccCCccHHHHHHHHHHHH--hchhccccCccc
Confidence 88744 46778899 999999999873
No 17
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=7.9e-40 Score=327.43 Aligned_cols=299 Identities=20% Similarity=0.224 Sum_probs=223.4
Q ss_pred CHHHHHHhcCCHHHHHHHHhcCccccccC----------chhhhh-hhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCC
Q 039300 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAG----------SASVLE-TLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDS 72 (534)
Q Consensus 4 T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~----------~~~~~~-~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~ 72 (534)
.+|+.|+..|+.+.++.++++....+... .....+ .....+|..|.||||.|+..++ +++++|+..
T Consensus 39 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~-- 115 (373)
T 2fo1_E 39 HSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITRE-- 115 (373)
T ss_dssp -------------------------------------------------------CCCHHHHHHHSSS-CCCSCCSTT--
T ss_pred cccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhccc--
Confidence 46778888888888888887765443110 000011 1234578899999999999655 888888764
Q ss_pred CCCcCCc-cCCCcHHHHHHHcCcHHHHHHHH--------hcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHH
Q 039300 73 APSSYIN-KAYQTPLSIAIDVRLNDIACFII--------DKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFID 143 (534)
Q Consensus 73 ~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll--------~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~ 143 (534)
+++ ..| ..|.||||+|+..|+.+++++|+ +.|++ ++..+. .|.||||+|+..|+.++ ++
T Consensus 116 ~~n-~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~-vn~~d~-~g~TpL~~A~~~g~~~i---------v~ 183 (373)
T 2fo1_E 116 SVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD-VNAMDC-DENTPLMLAVLARRRRL---------VA 183 (373)
T ss_dssp TTT-TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCC-TTCCCT-TSCCHHHHHHHHTCHHH---------HH
T ss_pred ccc-ccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCC-CcCCCC-CCCCHHHHHHHcChHHH---------HH
Confidence 333 344 78999999999999998888876 67776 677776 99999999999999999 88
Q ss_pred HHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhc---hhhhcccCCCCCcHHHHHHHcC---cHHHHHHHH
Q 039300 144 IMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEAS---KQLAYKRDCNGATPLHLAAENG---ELKVLKLLI 217 (534)
Q Consensus 144 ~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~g~tpL~~A~~~g---~~~~v~~Ll 217 (534)
.|++. +.+++..|..|.||||+|+..|+.+++++|++.+ .++ +..|..|.||||+|+..+ +.+++++|+
T Consensus 184 ~Ll~~----ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll 258 (373)
T 2fo1_E 184 YLMKA----GADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLV 258 (373)
T ss_dssp HHHHT----TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHH
T ss_pred HHHHC----CCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHH
Confidence 88875 3678889999999999999999999999999998 444 467899999999999998 899999999
Q ss_pred HhCCCcccc--------ccCCCCcHHHHHHhcCCHHHHHHHHhCC-cccccccccCCCCCcHHHHHHhcCChhHHHHhhh
Q 039300 218 NKYPDAIEI--------RDNSDRSILHVAAKHGNWNIVSFILKSP-EMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288 (534)
Q Consensus 218 ~~~~~~~~~--------~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 288 (534)
+.+++ ++. .|..|+||||+|+..|+.+++++|++.+ .+ +|.+|.+|+||||+|+..|+.+++++|++
T Consensus 259 ~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 334 (373)
T 2fo1_E 259 EKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN---KDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 334 (373)
T ss_dssp HHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC---ccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99988 554 6779999999999999999999999876 55 89999999999999999999999999999
Q ss_pred CcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhc
Q 039300 289 HKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKR 336 (534)
Q Consensus 289 ~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~ 336 (534)
+ |++++.+|. .|.|||++|.. ....+++++|.++++++
T Consensus 335 ~-gad~~~~d~--~g~t~l~~A~~-------~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 335 Q-GASVEAVDA--TDHTARQLAQA-------NNHHNIVDIFDRCRPER 372 (373)
T ss_dssp T-TCCSSCCCS--SSCCHHHHHHH-------TTCHHHHHHHHTTC---
T ss_pred c-CCCccCCCC--CCCCHHHHHHH-------cCCHHHHHHHHhcCccc
Confidence 8 899999999 99999999998 45678899999888753
No 18
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.8e-38 Score=298.88 Aligned_cols=225 Identities=23% Similarity=0.303 Sum_probs=180.6
Q ss_pred CCCCHHHHHHhcC-------------CHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHH
Q 039300 1 MDETPLHIAARIG-------------DHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRIL 67 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g-------------~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~L 67 (534)
.|+||||+||..| +.+++++|++.|++++. ..|..|.||||+|+..|+.++|++|
T Consensus 9 ~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~------------~~d~~g~t~L~~A~~~g~~~~v~~L 76 (253)
T 1yyh_A 9 DGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN------------QTDRTGETALHLAARYSRSDAAKRL 76 (253)
T ss_dssp -------------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccc------------ccCCCCCcHHHHHHHcCCHHHHHHH
Confidence 4899999999988 89999999999998763 3689999999999999999999999
Q ss_pred HHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHH
Q 039300 68 VEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVK 147 (534)
Q Consensus 68 l~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~ 147 (534)
+++|+++. ..|..|.||||+|+..|+.+++++|+++++...+..+. .|.||||+|+..++.++ ++.+++
T Consensus 77 l~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~---------v~~Ll~ 145 (253)
T 1yyh_A 77 LEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH-DGTTPLILAARLAVEGM---------LEDLIN 145 (253)
T ss_dssp HHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCT-TCCCHHHHHHHHTCSSH---------HHHHHH
T ss_pred HHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCC-CCCcHHHHHHHcChHHH---------HHHHHH
Confidence 99999885 67899999999999999999999999999866777776 89999999999999999 888887
Q ss_pred HhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccc
Q 039300 148 ILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIR 227 (534)
Q Consensus 148 ~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 227 (534)
. +.+++..|..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+..|+.+++++|+++|++ ++.+
T Consensus 146 ~----g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~ 219 (253)
T 1yyh_A 146 S----HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAKVLLDHFAN-RDIT 219 (253)
T ss_dssp T----TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCC
T ss_pred c----CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-cccc
Confidence 5 36788999999999999999999999999999999865 6789999999999999999999999999999 8999
Q ss_pred cCCCCcHHHHHHhcCCHHHHHHHHhCC
Q 039300 228 DNSDRSILHVAAKHGNWNIVSFILKSP 254 (534)
Q Consensus 228 d~~g~t~Lh~A~~~~~~~~~~~Ll~~~ 254 (534)
|..|+||+|+|+++|+.+++++|....
T Consensus 220 d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 220 DHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 999999999999999999999998764
No 19
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.9e-38 Score=293.74 Aligned_cols=224 Identities=23% Similarity=0.289 Sum_probs=186.5
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcC--CCCCcCC
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKD--SAPSSYI 78 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g--~~~~~~~ 78 (534)
||+||||.||+.|+.++|++|++.|++... .+|..|.||||+|+..|+.+++++|+++| .++....
T Consensus 1 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~ 68 (228)
T 2dzn_A 1 MSNYPLHQACMENEFFKVQELLHSKPSLLL------------QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYP 68 (228)
T ss_dssp --CCHHHHHHHTTCHHHHHHHHHHCGGGTT------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCC
T ss_pred CCccHHHHHHHhCCHHHHHHHHhcCccccc------------cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccC
Confidence 699999999999999999999999876542 47889999999999999999999999999 5554446
Q ss_pred ccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc
Q 039300 79 NKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR 158 (534)
Q Consensus 79 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 158 (534)
+..|.||||+|+..|+.+++++|++++.. .+++.
T Consensus 69 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----------------------------------------------~~~~~ 102 (228)
T 2dzn_A 69 DDSGWTPFHIACSVGNLEVVKSLYDRPLK----------------------------------------------PDLNK 102 (228)
T ss_dssp CTTSCCHHHHHHHHCCHHHHHHHHSSSSC----------------------------------------------CCTTC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCC----------------------------------------------ccccc
Confidence 78899999999999999999999988743 12344
Q ss_pred ccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 039300 159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA 238 (534)
Q Consensus 159 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 238 (534)
.+..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+..|+.+++++|++.++..++.+|..|+||||+|
T Consensus 103 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A 181 (228)
T 2dzn_A 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181 (228)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHH
T ss_pred CCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHH
Confidence 56678899999999999999999999988755 67888999999999999999999999888444888889999999999
Q ss_pred HhcCCHHHHHHHH-hCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300 239 AKHGNWNIVSFIL-KSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289 (534)
Q Consensus 239 ~~~~~~~~~~~Ll-~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 289 (534)
+..|+.+++++|+ +.|++ ++.+|.+|.||||+|+.. +++++|+++
T Consensus 182 ~~~~~~~~v~~Ll~~~ga~---~~~~~~~g~t~l~~A~~~---~~~~~l~~~ 227 (228)
T 2dzn_A 182 LAEGHGDAAVLLVEKYGAE---YDLVDNKGAKAEDVALNE---QVKKFFLNN 227 (228)
T ss_dssp HHTTCHHHHHHHHHHHCCC---SCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred HHcCCHHHHHHHHHhcCCC---CCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence 9999999999999 77776 888889999999998643 566666553
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.6e-38 Score=298.03 Aligned_cols=233 Identities=21% Similarity=0.238 Sum_probs=205.0
Q ss_pred hcccCCCCCcHhHHHHHhCcHHHHHHHHH----cCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCC
Q 039300 41 FGMRDIEGNTPLHNVVTKKHKRVIRILVE----KDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPD 116 (534)
Q Consensus 41 l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~----~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~ 116 (534)
++.+|.+|+||||+|+.+|+.+++++|++ .|.++ +..|..|.||||+|+..|+.+++++|+++|++ ++..+. .
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~ 78 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGAS-PMALDR-H 78 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-T
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCC-C
Confidence 34689999999999999999999999998 56666 46789999999999999999999999999987 566665 8
Q ss_pred CchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCC
Q 039300 117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCN 196 (534)
Q Consensus 117 g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 196 (534)
|.||||+|+..++.++ ++.+++........++..|..|.||||+|+..|+.+++++|++.|+++....+..
T Consensus 79 g~t~l~~A~~~~~~~~---------~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~ 149 (241)
T 1k1a_A 79 GQTAAHLACEHRSPTC---------LRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS 149 (241)
T ss_dssp SCCHHHHHHHTTCHHH---------HHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTT
T ss_pred CCCHHHHHHHcCCHHH---------HHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccC
Confidence 9999999999999999 9999998765555788889999999999999999999999999999876443378
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHh
Q 039300 197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276 (534)
Q Consensus 197 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~ 276 (534)
|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.
T Consensus 150 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~ 225 (241)
T 1k1a_A 150 GRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD---SSLKNCHNDTPLMVARS 225 (241)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCTTTTCSS
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC---CCCcCCCCCCHHHHHHh
Confidence 99999999999999999999999998 899999999999999999999999999999887 89999999999999999
Q ss_pred cCChhHHHHhhhC
Q 039300 277 GLHSDVVFTLSRH 289 (534)
Q Consensus 277 ~~~~~~v~~Ll~~ 289 (534)
.|+.++++.|.+.
T Consensus 226 ~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 226 RRVIDILRGKATR 238 (241)
T ss_dssp HHHHHHHTC----
T ss_pred cCcHHHHhhhccC
Confidence 9999999999876
No 21
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=8.1e-38 Score=291.43 Aligned_cols=223 Identities=22% Similarity=0.280 Sum_probs=193.6
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.++||||.||+.|+.+.+++|++.++.. ++.+|..|.||||+|+..|+.+++++|+++|+++. ..|.
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~ 71 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILADKSL------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDD 71 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHCGGG------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCT
T ss_pred cccchHHHHHHhCCHHHHHHHHHhchhh------------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC-CcCC
Confidence 3679999999999999999999886542 33578899999999999999999999999998775 6688
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD 160 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d 160 (534)
.|.||||+|+..|+.+++++|++++++ ++..|
T Consensus 72 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------------~~~~~ 103 (231)
T 3aji_A 72 AGWSPLHIAASAGXDEIVKALLVKGAH------------------------------------------------VNAVN 103 (231)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCC------------------------------------------------TTCCC
T ss_pred CCCCHHHHHHHcCHHHHHHHHHHcCCC------------------------------------------------CCCCC
Confidence 899999999999999999999987764 23345
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300 161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240 (534)
Q Consensus 161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 240 (534)
..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||.|+..|+.+++++|++.+.+ ++.+|..|+||||+|+.
T Consensus 104 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 181 (231)
T 3aji_A 104 QNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACD 181 (231)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHH
Confidence 568899999999999999999999988765 6788899999999999999999999999888 88899999999999999
Q ss_pred cCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289 (534)
Q Consensus 241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 289 (534)
.|+.+++++|+++|++ ++.+|..|.||||+|+..++.+++++|.++
T Consensus 182 ~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~ 227 (231)
T 3aji_A 182 EERVEEAKFLVTQGAS---IYIENKEEKTPLQVAKGGLGLILKRLAEGE 227 (231)
T ss_dssp TTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence 9999999999999877 888999999999999998888999988876
No 22
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.2e-38 Score=304.53 Aligned_cols=231 Identities=17% Similarity=0.149 Sum_probs=169.5
Q ss_pred hcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCC--CcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCc
Q 039300 41 FGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAP--SSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDEL 118 (534)
Q Consensus 41 l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~--~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~ 118 (534)
++.+|..|+||||+|+..|+.++|++|++.|++. .+..+..|.||||+|+..|+.+++++|+++|++ ++..+. .|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~-~g~ 79 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG-VLVAER-GGH 79 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCT-TSC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCC-CCC
Confidence 4568999999999999999999999999998873 457789999999999999999999999999998 566666 899
Q ss_pred hHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCC
Q 039300 119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGA 198 (534)
Q Consensus 119 t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 198 (534)
||||+|+..++.++ ++.+++... ....... .+ ++..+.. .....+.
T Consensus 80 tpL~~A~~~~~~~~---------v~~Ll~~~~----~~~~~~~--~~----------------~~~~~~~---~~~~~~~ 125 (282)
T 1oy3_D 80 TALHLACRVRAHTC---------ACVLLQPRP----SHPRDAS--DT----------------YLTQSQD---CTPDTSH 125 (282)
T ss_dssp CHHHHHTTTTCHHH---------HHHHSSSCC----SSCCCC--------------------------------------
T ss_pred CHHHHHHHcCCcch---------hHhhhccCC----CCchhhH--HH----------------Hhhcccc---cCcchhc
Confidence 99999999999988 666665432 1111100 00 1111111 1234567
Q ss_pred cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCC-CCcHHHHHHhc
Q 039300 199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRN-GNTSLHLAAMG 277 (534)
Q Consensus 199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~-g~t~Lh~A~~~ 277 (534)
++++.++..+.......++......++..|..|+||||+|+..|+.+++++|++.|++ ++.++.. |+||||+|+..
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~ 202 (282)
T 1oy3_D 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEA 202 (282)
T ss_dssp ------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHT
T ss_pred chhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcCHHHHHHHc
Confidence 7888777766555444443333333888999999999999999999999999999877 8888854 99999999999
Q ss_pred CChhHHHHhhhCcccchhhccccCCCCChHHHhHhh
Q 039300 278 LHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMT 313 (534)
Q Consensus 278 ~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~ 313 (534)
|+.+++++|+++ |++++.+|. .|.|||++|...
T Consensus 203 ~~~~~v~~Ll~~-gad~~~~d~--~g~tpL~~A~~~ 235 (282)
T 1oy3_D 203 QAASVLELLLKA-GADPTARMY--GGRTPLGSALLR 235 (282)
T ss_dssp TCHHHHHHHHHT-TCCTTCCCT--TSCCHHHHHHTS
T ss_pred CCHHHHHHHHHc-CCCCccccc--CCCCHHHHHHHc
Confidence 999999999998 899999999 999999999874
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1.5e-37 Score=290.80 Aligned_cols=223 Identities=21% Similarity=0.299 Sum_probs=150.3
Q ss_pred hcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchH
Q 039300 41 FGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTL 120 (534)
Q Consensus 41 l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~ 120 (534)
++.+|..|.||||+|+..|+.+++++|+++|+++. ..+..|.||||+|+..|+.+++++|++++++ ++..+. .|.||
T Consensus 4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~g~t~ 80 (237)
T 3b7b_A 4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGAL-VDPKDA-EGSTC 80 (237)
T ss_dssp CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-CCCCCT-TSCCH
T ss_pred cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-CCCCCC-CCCcH
Confidence 44689999999999999999999999999998875 6788999999999999999999999998876 344443 55666
Q ss_pred HHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcH
Q 039300 121 LHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATP 200 (534)
Q Consensus 121 L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tp 200 (534)
||.|+..++.++ ++.+++..+ ..++..+..|.||||+|+..|+.+++++|++.|+++. ..+..|.||
T Consensus 81 L~~A~~~~~~~~---------~~~Ll~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~ 147 (237)
T 3b7b_A 81 LHLAAKKGHYEV---------VQYLLSNGQ---MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENIC 147 (237)
T ss_dssp HHHHHHTTCHHH---------HHHHHTTTC---CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCH
T ss_pred HHHHHHcCCHHH---------HHHHHhCCC---CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCH
Confidence 666666666555 554444432 3445555556666666666666666666666655543 445556666
Q ss_pred HHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh
Q 039300 201 LHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS 280 (534)
Q Consensus 201 L~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 280 (534)
||.|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++|++ ++.+|.+|+||||+|+.+++.
T Consensus 148 L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 148 LHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD---VTLKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp HHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHHSCTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC---CCccCCCCCCHHHHHHHHHHH
Confidence 6666666666666666665555 555555566666666666666666666655554 555556666666666655555
Q ss_pred hHH
Q 039300 281 DVV 283 (534)
Q Consensus 281 ~~v 283 (534)
+.+
T Consensus 224 ~~~ 226 (237)
T 3b7b_A 224 WSA 226 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 24
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.1e-37 Score=287.49 Aligned_cols=228 Identities=23% Similarity=0.290 Sum_probs=208.5
Q ss_pred CCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHH
Q 039300 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFF 124 (534)
Q Consensus 45 d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A 124 (534)
+..++||||.|+..|+.++++.|++.++...+..+..|.||||+|+..|+.+++++|++.+++
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~----------------- 65 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP----------------- 65 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-----------------
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCC-----------------
Confidence 456889999999999999999999998777677888999999999999999999999988764
Q ss_pred HHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHH
Q 039300 125 VMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204 (534)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A 204 (534)
++..|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||.|
T Consensus 66 -------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A 113 (231)
T 3aji_A 66 -------------------------------VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYA 113 (231)
T ss_dssp -------------------------------SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred -------------------------------CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHH
Confidence 23345678999999999999999999999999865 6788999999999
Q ss_pred HHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHH
Q 039300 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVF 284 (534)
Q Consensus 205 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~ 284 (534)
+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.++++
T Consensus 114 ~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~ 189 (231)
T 3aji_A 114 ASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS---TNIQDTEGNTPLHLACDEERVEEAK 189 (231)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---ccccCCCCCCHHHHHHHCCCHHHHH
Confidence 999999999999999998 889999999999999999999999999999887 8999999999999999999999999
Q ss_pred HhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhh
Q 039300 285 TLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAK 335 (534)
Q Consensus 285 ~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~ 335 (534)
+|+++ |++++.+|. .|.||+++|.. .....+.++|.++|++
T Consensus 190 ~Ll~~-ga~~~~~~~--~g~t~l~~A~~-------~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 190 FLVTQ-GASIYIENK--EEKTPLQVAKG-------GLGLILKRLAEGEEAS 230 (231)
T ss_dssp HHHHT-TCCSCCCCT--TSCCHHHHSCH-------HHHHHHHHHHHHHHHC
T ss_pred HHHHC-CCCCCCCCC--CCCCHHHHHHh-------hHHHHHHHHHcccccc
Confidence 99998 899999999 99999999987 6678899999998875
No 25
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.1e-37 Score=287.94 Aligned_cols=212 Identities=21% Similarity=0.305 Sum_probs=193.5
Q ss_pred CCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHh
Q 039300 48 GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMR 127 (534)
Q Consensus 48 g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~ 127 (534)
|+||||.|+..|+.+++++|++.|++.....|..|.||||+|+..|+.+++++|++++++.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~------------------- 62 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV------------------- 62 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTC-------------------
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccc-------------------
Confidence 7899999999999999999999998887778999999999999999999999999988541
Q ss_pred cCcchhhhhhhHHHHHHHHHHhCCChhhhhc-ccCCCCcHHHHHHhCCCHHHHHHHHhhc--hhhhcccCCCCCcHHHHH
Q 039300 128 QNYDLSKSMQFLQFIDIMVKILGTNKDLINR-LDWHQRNPLHYAAASGNVQMVQRLLEAS--KQLAYKRDCNGATPLHLA 204 (534)
Q Consensus 128 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~-~d~~g~tpL~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~tpL~~A 204 (534)
.++. .+..|.||||+|+..|+.+++++|++.| .+.. ..+..|.||||.|
T Consensus 63 ---------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A 114 (228)
T 2dzn_A 63 ---------------------------NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLA 114 (228)
T ss_dssp ---------------------------CGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHH
T ss_pred ---------------------------cccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHH
Confidence 1222 5667999999999999999999999998 5544 6788999999999
Q ss_pred HHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCC-cccccccccCCCCCcHHHHHHhcCChhHH
Q 039300 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP-EMENLINLIDRNGNTSLHLAAMGLHSDVV 283 (534)
Q Consensus 205 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v 283 (534)
+..|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|++.+ .+ ++.+|..|+||||+|+..|+.+++
T Consensus 115 ~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~d~~g~t~L~~A~~~~~~~~v 190 (228)
T 2dzn_A 115 VGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA---VNWQDKQGWTPLFHALAEGHGDAA 190 (228)
T ss_dssp HHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCC---SCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccc---ccCcCCCCCCHHHHHHHcCCHHHH
Confidence 999999999999999998 8999999999999999999999999999998 55 899999999999999999999999
Q ss_pred HHhhhCcccchhhccccCCCCChHHHhHh
Q 039300 284 FTLSRHKSVNIRAKNRSARNNTTLEIDEM 312 (534)
Q Consensus 284 ~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~ 312 (534)
++|++..|+|++.+|. .|.||+++|..
T Consensus 191 ~~Ll~~~ga~~~~~~~--~g~t~l~~A~~ 217 (228)
T 2dzn_A 191 VLLVEKYGAEYDLVDN--KGAKAEDVALN 217 (228)
T ss_dssp HHHHHHHCCCSCCBCT--TSCBGGGGCSS
T ss_pred HHHHHhcCCCCCccCC--CCCcHHHHHHH
Confidence 9999555899999999 99999999976
No 26
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=9.7e-37 Score=285.53 Aligned_cols=222 Identities=20% Similarity=0.233 Sum_probs=162.5
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA 81 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~ 81 (534)
|.||||.|++.|+.+++++|++.|++++. +|..|.||||+|+..|+.+++++|+++|++.....+..
T Consensus 9 ~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~-------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 75 (240)
T 3eu9_A 9 STWDIVKATQYGIYERCRELVEAGYDVRQ-------------PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDL 75 (240)
T ss_dssp GGCCHHHHHHTTCHHHHHHHHHTTCCTTC-------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTT
T ss_pred cchHHHHHHHcCChHHHHHHHHcCCCcCC-------------CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCc
Confidence 55666666666666666666666665552 55666666666666666666666666666665454555
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300 82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161 (534)
Q Consensus 82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 161 (534)
|.||||+|+..|+.+++++|++.+++ ++..+.
T Consensus 76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------------~~~~~~ 107 (240)
T 3eu9_A 76 NSTPLHWATRQGHLSMVVQLMKYGAD------------------------------------------------PSLIDG 107 (240)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTTCC------------------------------------------------TTCCCT
T ss_pred CCChhHHHHHcCCHHHHHHHHHcCCC------------------------------------------------CcccCC
Confidence 66666666666666666666665543 344556
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCc-HHHHHHHHHhCCCccccccC-CCCcHHHHHH
Q 039300 162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE-LKVLKLLINKYPDAIEIRDN-SDRSILHVAA 239 (534)
Q Consensus 162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~ 239 (534)
.|.||||+|+..|+.+++++|++.|+++. ..+..|.||||.|+..++ .+++++|++.+.+ ++..+. .|+||||+|+
T Consensus 108 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~-~~~~~~~~g~t~L~~A~ 185 (240)
T 3eu9_A 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS-VNLGDKYHKNTALHWAV 185 (240)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC-TTCCCTTTCCCHHHHHH
T ss_pred CCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC-cchhhccCCCcHHHHHH
Confidence 67888888888888888888888887754 567788888888886655 7888888888887 666665 7888888888
Q ss_pred hcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300 240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289 (534)
Q Consensus 240 ~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 289 (534)
.+|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|++.
T Consensus 186 ~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 186 LAGNTTVISLLLEAGAN---VDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHTCHHHHHHHHHHTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 88888888888888766 788888888888888888888888888876
No 27
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=1e-36 Score=285.18 Aligned_cols=222 Identities=20% Similarity=0.281 Sum_probs=203.6
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|.||||+||..|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|+++|+++. ..+.
T Consensus 10 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~ 75 (237)
T 3b7b_A 10 NKRSPLHAAAEAGHVDICHMLVQAGANIDT-------------CSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDA 75 (237)
T ss_dssp CSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-------------CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCT
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHcCCCcCc-------------cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCC
Confidence 489999999999999999999999998874 78899999999999999999999999998875 6788
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD 160 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d 160 (534)
.|.||||+|+..|+.+++++|+++++...+..+. .|.||||.|+..++.++ ++.+++.. .+++..|
T Consensus 76 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~---------~~~Ll~~g----~~~~~~~ 141 (237)
T 3b7b_A 76 EGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD-GGWTPMIWATEYKHVDL---------VKLLLSKG----SDINIRD 141 (237)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCT-TSCCHHHHHHHTTCHHH---------HHHHHHTT----CCTTCCC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCC-CCCCHHHHHHHcCCHHH---------HHHHHHCC----CCCCccC
Confidence 9999999999999999999999999655677776 89999999999999998 88888753 5688899
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300 161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240 (534)
Q Consensus 161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 240 (534)
..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|++.|+.+++++|++++++ ++.+|..|+||||+|+.
T Consensus 142 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~ 219 (237)
T 3b7b_A 142 NEENICLHWAAFSGCVDIAEILLAAKCDLH-AVNIHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASL 219 (237)
T ss_dssp TTSCCHHHHHHHHCCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCT
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence 999999999999999999999999999865 6788999999999999999999999999999 89999999999999999
Q ss_pred cCCHHHHHHHHh
Q 039300 241 HGNWNIVSFILK 252 (534)
Q Consensus 241 ~~~~~~~~~Ll~ 252 (534)
+++.+.+..+++
T Consensus 220 ~~~~~~~~~l~~ 231 (237)
T 3b7b_A 220 NSQVWSALQMSK 231 (237)
T ss_dssp TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999876666654
No 28
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=4e-37 Score=288.61 Aligned_cols=225 Identities=24% Similarity=0.330 Sum_probs=200.1
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHh----cCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMK----YVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSS 76 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~ 76 (534)
.|+||||+||+.|+.+++++|++ .|.+++ .+|..|.||||+|+..|+.+++++|++.|+++.
T Consensus 8 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~- 73 (241)
T 1k1a_A 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELD-------------IYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM- 73 (241)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSC-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCC-------------cccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-
Confidence 48999999999999999999998 566655 589999999999999999999999999998885
Q ss_pred CCccCCCcHHHHHHHcCcHHHHHHHHhcCCC---CcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCCh
Q 039300 77 YINKAYQTPLSIAIDVRLNDIACFIIDKSSE---SLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNK 153 (534)
Q Consensus 77 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 153 (534)
..+..|.||||+|+..|+.+++++|++.++. ..+..+. .|.||||.|+..++.++ ++.+++..
T Consensus 74 ~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~~~---------~~~Ll~~g---- 139 (241)
T 1k1a_A 74 ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY-DGLTALHVAVNTECQET---------VQLLLERG---- 139 (241)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCT-TSCCHHHHHHHHTCHHH---------HHHHHHTT----
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCc-CCCcHHHHHHHcCCHHH---------HHHHHHcC----
Confidence 6788999999999999999999999999873 3555565 89999999999999998 88888763
Q ss_pred hhhhccc-CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCC
Q 039300 154 DLINRLD-WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDR 232 (534)
Q Consensus 154 ~~~~~~d-~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 232 (534)
.+++..+ ..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+
T Consensus 140 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~ 217 (241)
T 1k1a_A 140 ADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHND 217 (241)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSC
T ss_pred CCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCcCCCCC
Confidence 5677777 789999999999999999999999999865 6789999999999999999999999999999 899999999
Q ss_pred cHHHHHHhcCCHHHHHHHHhCCc
Q 039300 233 SILHVAAKHGNWNIVSFILKSPE 255 (534)
Q Consensus 233 t~Lh~A~~~~~~~~~~~Ll~~~~ 255 (534)
||||+|+..|+.++++.|.+.++
T Consensus 218 tpl~~A~~~~~~~i~~~l~~~~a 240 (241)
T 1k1a_A 218 TPLMVARSRRVIDILRGKATRPA 240 (241)
T ss_dssp CTTTTCSSHHHHHHHTC------
T ss_pred CHHHHHHhcCcHHHHhhhccCCC
Confidence 99999999999999999987653
No 29
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-37 Score=295.68 Aligned_cols=223 Identities=20% Similarity=0.260 Sum_probs=160.6
Q ss_pred CCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcH-HHHHHHHHcCCCCCcCCccC
Q 039300 3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHK-RVIRILVEKDSAPSSYINKA 81 (534)
Q Consensus 3 ~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~-e~v~~Ll~~g~~~~~~~~~~ 81 (534)
.|||+.||+.|+.++|++|++.|++.... ....++..|..|.||||.|+..++. +++++|++.|++++ ..|.+
T Consensus 12 ~~~L~~A~~~G~~~~v~~LL~~~~~~~~~-----~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn-~~d~~ 85 (269)
T 4b93_B 12 VEKLLRAVADGDLEMVRYLLEWTEEDLED-----AEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVN-VTSQD 85 (269)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------CCCCTT-CCCTT
T ss_pred hhHHHHHHHcCCHHHHHHHHHCCCccccc-----ccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCC-CcCCC
Confidence 47999999999999999999999875421 1234556888999999999988876 58899999999985 67999
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300 82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161 (534)
Q Consensus 82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 161 (534)
|.||||+|+..|+.+++++|++.+++ ++..+.
T Consensus 86 G~TpLh~A~~~g~~~~v~~Ll~~~a~------------------------------------------------~~~~~~ 117 (269)
T 4b93_B 86 GSSPLHVAALHGRADLIPLLLKHGAN------------------------------------------------AGARNA 117 (269)
T ss_dssp SCCHHHHHHHTTCTTHHHHHHHTTCC------------------------------------------------TTCCCT
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCC------------------------------------------------cCccCC
Confidence 99999999999999999999998775 233445
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 039300 162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241 (534)
Q Consensus 162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 241 (534)
.|.||+|.|+..++.+++++|++.|++++ .+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+
T Consensus 118 ~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n-~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~ 195 (269)
T 4b93_B 118 DQAVPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIE 195 (269)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHT
T ss_pred CCCCccccccccChHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHc
Confidence 67888888888889999999999988765 6788999999999999999999999999988 888999999999999999
Q ss_pred CCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHh
Q 039300 242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL 286 (534)
Q Consensus 242 ~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 286 (534)
|+.+++++|+++|++ +|.+|.+|+||||+|+++++ ++++|
T Consensus 196 g~~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~~~--i~~lL 235 (269)
T 4b93_B 196 KHVFVVELLLLHGAS---VQVLNKRQRTAVDCAEQNSK--IMELL 235 (269)
T ss_dssp TCHHHHHHHHHTTCC---SCCCCTTSCCSGGGSCTTCH--HHHHT
T ss_pred CCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHHhCCc--HHHHH
Confidence 999999999999887 88999999999999987664 44443
No 30
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.4e-37 Score=300.01 Aligned_cols=246 Identities=22% Similarity=0.275 Sum_probs=199.0
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA 81 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~ 81 (534)
|.||||.||..|+.++|++|+++|++++. +|..|.||||+|+..|+.++|++|+++|++++ ..|..
T Consensus 40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~-------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~ 105 (299)
T 1s70_B 40 DGAVFLAACSSGDTEEVLRLLERGADINY-------------ANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNE 105 (299)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHCCCTTC-------------BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred CccHHHHHHHcCCHHHHHHHHHcCCCCcc-------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCC
Confidence 57899999999999999999999998773 78899999999999999999999999998885 67889
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300 82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161 (534)
Q Consensus 82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 161 (534)
|.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+..++.++ ++.++.... ..++..+.
T Consensus 106 g~tpL~~A~~~g~~~~v~~Ll~~g~~-~~~~~~-~g~t~l~~A~~~~~~~~---------~~~ll~~~~---~~~~~~~~ 171 (299)
T 1s70_B 106 GWIPLHAAASCGYLDIAEYLISQGAH-VGAVNS-EGDTPLDIAEEEAMEEL---------LQNEVNRQG---VDIEAARK 171 (299)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHCCSHHHHHH---------HHHHHHHHT---CCHHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCC-CCCcCC-CCCCHHHHHHhcchHHH---------HHHHHhhcC---CCchhhhh
Confidence 99999999999999999999999987 566665 89999999999888877 766666544 23333322
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 039300 162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241 (534)
Q Consensus 162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 241 (534)
.+.++++ ..+..++..+.......+..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+.+
T Consensus 172 ~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~ 242 (299)
T 1s70_B 172 EEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHW 242 (299)
T ss_dssp HHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHT
T ss_pred hhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhc
Confidence 2333332 2345566666655556777888999999999999999999988888 788888899999999999
Q ss_pred CCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhh
Q 039300 242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSR 288 (534)
Q Consensus 242 ~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~ 288 (534)
|+.+++++|+++|++ ++.+|..|+||||+|+... .+.++.+++
T Consensus 243 ~~~~~v~~Ll~~gad---~~~~d~~g~t~l~~A~~~~-~~~l~~l~~ 285 (299)
T 1s70_B 243 GKEEACRILVENLCD---MEAVNKVGQTAFDVADEDI-LGYLEELQK 285 (299)
T ss_dssp TCHHHHHHHHHTTCC---TTCCCTTSCCTTTSCCSGG-GHHHHHHHH
T ss_pred CCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHHH-HHHHHHHHH
Confidence 999999999998876 8888899999999986533 344444444
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-37 Score=291.41 Aligned_cols=222 Identities=23% Similarity=0.291 Sum_probs=169.8
Q ss_pred ccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHH
Q 039300 43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122 (534)
Q Consensus 43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~ 122 (534)
.+|..+.+||+.||.+|+.++|++|++.|++.....+ ...+..+. .+.|||+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~---------------------------~~~~~~~~-~~~t~L~ 57 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAE---------------------------DTVSAADP-EFCHPLC 57 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC---------------------------------------------------
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCccccccc---------------------------ccccccCc-cCCCHHH
Confidence 3677788899999999999999999988865421100 00111122 4555565
Q ss_pred HHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHH
Q 039300 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202 (534)
Q Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 202 (534)
.|+..++.+. +++.+.+.|.++|..|.+|+||||+|+..|+.+++++|++.|+++. ..+..|.||+|
T Consensus 58 ~a~~~~~~~~------------~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~ 124 (269)
T 4b93_B 58 QCPKCAPAQK------------RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLH 124 (269)
T ss_dssp -----------------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHH
T ss_pred HHHHhCCHHH------------HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccc
Confidence 5555444221 2333334446678888899999999999999999999999999865 67889999999
Q ss_pred HHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhH
Q 039300 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDV 282 (534)
Q Consensus 203 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~ 282 (534)
.|+..++.++++.|++.+++ ++.+|..|+||||+|+.+|+.+++++|++.|++ +|.+|..|+||||+|+..|+.++
T Consensus 125 ~a~~~~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad---vn~~~~~g~t~Lh~A~~~g~~~~ 200 (269)
T 4b93_B 125 LACQQGHFQVVKCLLDSNAK-PNKKDLSGNTPLIYACSGGHHELVALLLQHGAS---INASNNKGNTALHEAVIEKHVFV 200 (269)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHH
T ss_pred cccccChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC---CCccccCCCcHHHHHHHcCCHHH
Confidence 99999999999999999999 899999999999999999999999999999887 99999999999999999999999
Q ss_pred HHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300 283 VFTLSRHKSVNIRAKNRSARNNTTLEIDEM 312 (534)
Q Consensus 283 v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~ 312 (534)
+++|+++ |+|++.+|. .|+|||++|.+
T Consensus 201 v~~Ll~~-Gad~~~~d~--~G~TpL~~A~~ 227 (269)
T 4b93_B 201 VELLLLH-GASVQVLNK--RQRTAVDCAEQ 227 (269)
T ss_dssp HHHHHHT-TCCSCCCCT--TSCCSGGGSCT
T ss_pred HHHHHHC-CCCCCCcCC--CCCCHHHHHHh
Confidence 9999998 899999999 99999999986
No 32
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.9e-36 Score=300.07 Aligned_cols=253 Identities=18% Similarity=0.223 Sum_probs=197.0
Q ss_pred cccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHH
Q 039300 42 GMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLL 121 (534)
Q Consensus 42 ~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L 121 (534)
+.+|.+|.||||+|+..|+.++|++|+++|++++ ..|..|.||||+|+..|+.+++++|++++++. + .. +|.|||
T Consensus 14 ~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~--~~-~g~t~L 88 (364)
T 3ljn_A 14 IKSDDENMEKIHVAARKGQTDEVRRLIETGVSPT-IQNRFGCTALHLACKFGCVDTAKYLASVGEVH-S--LW-HGQKPI 88 (364)
T ss_dssp --CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-C--CB-TTBCHH
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-c--cc-CCCCHH
Confidence 3578899999999999999999999999998885 67999999999999999999999999999842 1 11 445555
Q ss_pred HHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHH
Q 039300 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPL 201 (534)
Q Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 201 (534)
|+|+..++.++ ++.|++.....+..++. ......... ......+..|..|.|||
T Consensus 89 ~~A~~~g~~~~---------v~~Ll~~~~~~~~~~~~----------~~~~~~~~~-------~~~~~~~~~~~~g~t~L 142 (364)
T 3ljn_A 89 HLAVMANKTDL---------VVALVEGAKERGQMPES----------LLNECDERE-------VNEIGSHVKHCKGQTAL 142 (364)
T ss_dssp HHHHHTTCHHH---------HHHHHHHHHHHTCCHHH----------HHTCCCCCC-------EEEETTEEEEESCCCHH
T ss_pred HHHHHcCCHHH---------HHHHHHhccccCCCHHH----------HHhhcchHh-------hhhhccccCCCCCCCHH
Confidence 55555555554 44444432110010000 000000000 00000113677899999
Q ss_pred HHHHHcC--cHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcc--cccccccCCCCCcHHHHHHhc
Q 039300 202 HLAAENG--ELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM--ENLINLIDRNGNTSLHLAAMG 277 (534)
Q Consensus 202 ~~A~~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~--~~~~~~~d~~g~t~Lh~A~~~ 277 (534)
|+|+..| +.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++ ...+|.+|..|+||||+|+..
T Consensus 143 ~~A~~~g~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~ 221 (364)
T 3ljn_A 143 HWCVGLGPEYLEMIKILVQLGAS-PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILI 221 (364)
T ss_dssp HHHHHSCGGGHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTT
T ss_pred HHHHHcCCchHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHc
Confidence 9999999 99999999999998 899999999999999999999999999998654 223788999999999999999
Q ss_pred CChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhc
Q 039300 278 LHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKR 336 (534)
Q Consensus 278 ~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~ 336 (534)
|+.+++++|+++ |+|++.+|. .|.|||++|.. ....+++++|+++|+..
T Consensus 222 g~~~~v~~Ll~~-gad~~~~d~--~g~tpL~~A~~-------~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 222 NWEDVAMRFVEM-GIDVNMEDN--EHTVPLYLSVR-------AAMVLLTKELLQKTDVF 270 (364)
T ss_dssp TCHHHHHHHHTT-TCCTTCCCT--TSCCHHHHHHH-------TCCHHHHHHHHHHSCHH
T ss_pred CCHHHHHHHHHc-CCCCCCCCC--CCCCHHHHHHH-------hChHHHHHHHHHcCCch
Confidence 999999999998 899999999 99999999998 45678999999998764
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.6e-36 Score=294.22 Aligned_cols=272 Identities=14% Similarity=0.126 Sum_probs=224.5
Q ss_pred HHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHH
Q 039300 7 HIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPL 86 (534)
Q Consensus 7 h~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL 86 (534)
+.+++.|+.+.++.++....++..... +......+..|.||||.||..|+.++|++|+++|++++ ..|..|.|||
T Consensus 3 ~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L 77 (299)
T 1s70_B 3 MADAKQKRNEQLKRWIGSETDLEPPVV----KRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTAL 77 (299)
T ss_dssp SHHHHHHHHHHHHHHHHTTTSSCCSCC----CCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHH
T ss_pred hhHHHHHHHHHHHHHHccccccccccc----cCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHH
Confidence 357888899999999988665443110 11111245678899999999999999999999998875 6789999999
Q ss_pred HHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcH
Q 039300 87 SIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNP 166 (534)
Q Consensus 87 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tp 166 (534)
|+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..|+.++ ++.|++.. .+++..|..|.||
T Consensus 78 ~~A~~~g~~~~v~~Ll~~ga~-~~~~~~-~g~tpL~~A~~~g~~~~---------v~~Ll~~g----~~~~~~~~~g~t~ 142 (299)
T 1s70_B 78 HQACIDDNVDMVKFLVENGAN-INQPDN-EGWIPLHAAASCGYLDI---------AEYLISQG----AHVGAVNSEGDTP 142 (299)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHHHHHTCHHH---------HHHHHHTT----CCTTCCCTTSCCH
T ss_pred HHHHHcCCHHHHHHHHHCCCC-CCCCCC-CCCcHHHHHHHcCCHHH---------HHHHHhCC----CCCCCcCCCCCCH
Confidence 999999999999999999987 566666 89999999999999998 88887753 5688889999999
Q ss_pred HHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHH
Q 039300 167 LHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNI 246 (534)
Q Consensus 167 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~ 246 (534)
||+|+..++.++++.++..........+..+.++++ ..+..++..+.......+..|.||||+|+.+|+.++
T Consensus 143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 214 (299)
T 1s70_B 143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214 (299)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHH
T ss_pred HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHH
Confidence 999999999999998887543222222222333332 345566677766566788899999999999999999
Q ss_pred HHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300 247 VSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM 312 (534)
Q Consensus 247 ~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~ 312 (534)
+++|++.|++ +|.+|.+|+||||+|+..|+.+++++|+++ |+|++.+|. .|.||+++|.+
T Consensus 215 v~~Ll~~g~d---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-gad~~~~d~--~g~t~l~~A~~ 274 (299)
T 1s70_B 215 LKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAVNK--VGQTAFDVADE 274 (299)
T ss_dssp HHHHHTTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCTTTSCCS
T ss_pred HHHHHHcCCC---CCCcCCCCCcHHHHHHhcCCHHHHHHHHHc-CCCCCCcCC--CCCCHHHHHHH
Confidence 9999999887 899999999999999999999999999998 899999999 99999999976
No 34
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.2e-35 Score=285.68 Aligned_cols=225 Identities=12% Similarity=0.112 Sum_probs=202.2
Q ss_pred ccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHH
Q 039300 43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122 (534)
Q Consensus 43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~ 122 (534)
.+|..|.||||+|+..|+.++|++|+++|++++.. +|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||
T Consensus 26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~-~g~t~L~ 100 (285)
T 3kea_A 26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLD-DSQFDD-KGNTALY 100 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCC-TTCCCT-TSCCHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCC-CCCcHHH
Confidence 58999999999999999999999999999887633 599999999999999999999999998 566666 8999999
Q ss_pred HHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCC-CcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHH
Q 039300 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQ-RNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPL 201 (534)
Q Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g-~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL 201 (534)
+|+..++.++ ++.|++. +.+++..+..| .||||+|+..|+.+++++|+++|++.. ....|.|||
T Consensus 101 ~A~~~g~~~~---------v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L 165 (285)
T 3kea_A 101 YAVDSGNMQT---------VKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCI 165 (285)
T ss_dssp HHHHTTCHHH---------HHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--CCSTHHHHH
T ss_pred HHHHcCCHHH---------HHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--cccCCccHH
Confidence 9999999999 8888887 36789999999 799999999999999999999998753 122899999
Q ss_pred HHHHHcCcHHHHHHHHHhCCCccccccCCCCcH-HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh
Q 039300 202 HLAAENGELKVLKLLINKYPDAIEIRDNSDRSI-LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS 280 (534)
Q Consensus 202 ~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 280 (534)
|+|+..|+.+++++|+++|++ ++.+|..|+|| ||+|+.+|+.+++++|+++|++ ++.+| +.|+..|+.
T Consensus 166 ~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad---~~~~~-------~~a~~~~~~ 234 (285)
T 3kea_A 166 HITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN---IYSAN-------LENVLLDDA 234 (285)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC---STTTT-------GGGGTTTCH
T ss_pred HHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC---CCCCC-------hhhhhcCCH
Confidence 999999999999999999998 89999999998 9999999999999999999887 77776 467889999
Q ss_pred hHHHHhhhCcccchhhccc
Q 039300 281 DVVFTLSRHKSVNIRAKNR 299 (534)
Q Consensus 281 ~~v~~Ll~~~~~~~~~~n~ 299 (534)
+++++|+++ |++++....
T Consensus 235 ~iv~~Ll~~-g~~~~~~~~ 252 (285)
T 3kea_A 235 EIAKMIIEK-HVEYKSDSY 252 (285)
T ss_dssp HHHHHHHHH-HHHHTTCTT
T ss_pred HHHHHHHHc-CCCCCCccc
Confidence 999999998 777765443
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=6.2e-35 Score=270.31 Aligned_cols=212 Identities=19% Similarity=0.280 Sum_probs=160.9
Q ss_pred CCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHc
Q 039300 13 GDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDV 92 (534)
Q Consensus 13 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~ 92 (534)
|+.+++++|+++|++++. ..|..|.||||+|+..|+.+++++|+++|+++. ..|..|.||||+|+..
T Consensus 2 g~~~~i~~Ll~~g~~~~~------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 68 (223)
T 2f8y_A 2 DAPAVISDFIYQGASLHN------------QTDRTGETALHLAARYSRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSA 68 (223)
T ss_dssp ---CCEETTEETTCCTTC------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHT
T ss_pred CcHHHHHHHHHcCCCccc------------ccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHc
Confidence 678889999999988764 358899999999999999999999999998875 6788999999999999
Q ss_pred CcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHh
Q 039300 93 RLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAA 172 (534)
Q Consensus 93 g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~ 172 (534)
|+.+++++|+++++...+ ..+..|.||||+|+.
T Consensus 69 ~~~~~v~~Ll~~~~~~~~-----------------------------------------------~~~~~g~t~L~~A~~ 101 (223)
T 2f8y_A 69 DAQGVFQILIRNRATDLD-----------------------------------------------ARMHDGTTPLILAAR 101 (223)
T ss_dssp TCHHHHHHHHHBTTSCTT-----------------------------------------------CCCTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCcc-----------------------------------------------cCCCCCCcHHHHHHH
Confidence 999999999998764333 334456667777777
Q ss_pred CCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHh
Q 039300 173 SGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK 252 (534)
Q Consensus 173 ~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~ 252 (534)
.|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++
T Consensus 102 ~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 179 (223)
T 2f8y_A 102 LAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLD 179 (223)
T ss_dssp HTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred hCcHHHHHHHHHcCCCCc-CcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 777777777777766644 5566677777777777777777777777666 66677777777777777777777777777
Q ss_pred CCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300 253 SPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289 (534)
Q Consensus 253 ~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 289 (534)
++++ ++.+|..|.||||+|+..++.+++++|+++
T Consensus 180 ~ga~---~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~ 213 (223)
T 2f8y_A 180 HFAN---RDITDHMDRLPRDIAQERMHHDIVRLLDEY 213 (223)
T ss_dssp TTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred cCCC---CccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence 7665 666777777777777777777777777776
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.5e-35 Score=271.23 Aligned_cols=202 Identities=24% Similarity=0.230 Sum_probs=180.8
Q ss_pred hCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhh
Q 039300 58 KKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQ 137 (534)
Q Consensus 58 ~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 137 (534)
.|+.+++++|+++|+++....|..|.||||+|+..|+.+++++|++++++
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~------------------------------ 50 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD------------------------------ 50 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC------------------------------
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCC------------------------------
Confidence 36788888999999888777788899999999999999999999987664
Q ss_pred hHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHH
Q 039300 138 FLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLI 217 (534)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 217 (534)
++..|..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.++++.|+
T Consensus 51 ------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll 112 (223)
T 2f8y_A 51 ------------------ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI 112 (223)
T ss_dssp ------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred ------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHH
Confidence 23456678999999999999999999999998556678899999999999999999999999
Q ss_pred HhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhc
Q 039300 218 NKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAK 297 (534)
Q Consensus 218 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~ 297 (534)
+.+++ ++..|..|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++ |++++.+
T Consensus 113 ~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~ 187 (223)
T 2f8y_A 113 NSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN---KDMQNNREETPLFLAAREGSYETAKVLLDH-FANRDIT 187 (223)
T ss_dssp HTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCC
T ss_pred HcCCC-CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCcCHHHHHHHcCCHHHHHHHHHc-CCCCccc
Confidence 99998 899999999999999999999999999999877 899999999999999999999999999998 7999999
Q ss_pred cccCCCCChHHHhHhhh
Q 039300 298 NRSARNNTTLEIDEMTR 314 (534)
Q Consensus 298 n~~~~g~t~l~~a~~~~ 314 (534)
|. .|.||+++|....
T Consensus 188 ~~--~g~t~l~~A~~~~ 202 (223)
T 2f8y_A 188 DH--MDRLPRDIAQERM 202 (223)
T ss_dssp CT--TCCCHHHHHHHTT
T ss_pred cc--cCCCHHHHHHHhc
Confidence 99 9999999998743
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=271.40 Aligned_cols=232 Identities=22% Similarity=0.229 Sum_probs=205.8
Q ss_pred ccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHH
Q 039300 43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLH 122 (534)
Q Consensus 43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~ 122 (534)
..|..|.||||.|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++++++..
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~------------- 69 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVD------------- 69 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-------------
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcch-------------
Confidence 468899999999999999999999999998875 678899999999999999999999999887521
Q ss_pred HHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHH
Q 039300 123 FFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLH 202 (534)
Q Consensus 123 ~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~ 202 (534)
...+..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||
T Consensus 70 ----------------------------------~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~ 114 (240)
T 3eu9_A 70 ----------------------------------QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS-LIDGEGCSCIH 114 (240)
T ss_dssp ----------------------------------CCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHH
T ss_pred ----------------------------------hhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHH
Confidence 1123347799999999999999999999999865 67889999999
Q ss_pred HHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC-HHHHHHHHhCCcccccccccCC-CCCcHHHHHHhcCCh
Q 039300 203 LAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN-WNIVSFILKSPEMENLINLIDR-NGNTSLHLAAMGLHS 280 (534)
Q Consensus 203 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~~~~~Ll~~~~~~~~~~~~d~-~g~t~Lh~A~~~~~~ 280 (534)
.|+..|+.+++++|++++++ ++..|..|.||||+|+..++ .+++++|++.+.+ ++..+. .|+||||+|+..|+.
T Consensus 115 ~A~~~~~~~~~~~Ll~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~---~~~~~~~~g~t~L~~A~~~~~~ 190 (240)
T 3eu9_A 115 LAAQFGHTSIVAYLIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VNLGDKYHKNTALHWAVLAGNT 190 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCC---TTCCCTTTCCCHHHHHHHHTCH
T ss_pred HHHHcCHHHHHHHHHhcCCC-ccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCC---cchhhccCCCcHHHHHHHcCCH
Confidence 99999999999999999998 89999999999999997766 8999999999877 888886 999999999999999
Q ss_pred hHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhcc
Q 039300 281 DVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRA 337 (534)
Q Consensus 281 ~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~ 337 (534)
+++++|+++ |++++.+|. .|.||+++|.. ....++++.|++++++.+
T Consensus 191 ~~v~~Ll~~-g~~~~~~~~--~g~t~l~~A~~-------~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 191 TVISLLLEA-GANVDAQNI--KGESALDLAKQ-------RKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHHHHH-TCCTTCBCT--TSCBHHHHHHH-------TTCHHHHHHHHHHC----
T ss_pred HHHHHHHHc-CCCCCCcCC--CCCCHHHHHHH-------cCcHHHHHHHHHhhhccC
Confidence 999999998 799999999 99999999998 557789999999987654
No 38
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=4.7e-34 Score=266.11 Aligned_cols=205 Identities=20% Similarity=0.261 Sum_probs=139.4
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhc-CccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCC----
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKY-VPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPS---- 75 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~---- 75 (534)
.|+||||.||+.|+.++|++|++. |++++ .+|..|.||||+|+..|+.+++++|+++|+++.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 68 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-------------QRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPM 68 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-------------cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccc
Confidence 599999999999999999999998 88877 489999999999999999999999999998753
Q ss_pred cCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhh
Q 039300 76 SYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDL 155 (534)
Q Consensus 76 ~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 155 (534)
+..|..|.||||+|+..|+.+++++|++++++ ++..+. . +.+ . ..
T Consensus 69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~--~~~----------------------------~---~~ 113 (232)
T 2rfa_A 69 TSELYEGQTALHIAVINQNVNLVRALLARGAS-VSARAT-G--SVF----------------------------H---YR 113 (232)
T ss_dssp CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCC-S--GGG----------------------------S---CC
T ss_pred cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCC-CCcccC-C--cce----------------------------e---ec
Confidence 34577899999999999999999999999987 333221 0 100 0 11
Q ss_pred hhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHH----HHHHHhCCCcc-----cc
Q 039300 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVL----KLLINKYPDAI-----EI 226 (534)
Q Consensus 156 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v----~~Ll~~~~~~~-----~~ 226 (534)
.+..|..|.||||+|+..|+.+++++|+++|+++. .+|..|.||||+|+..|+.+++ ++|++.+++.. +.
T Consensus 114 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~ 192 (232)
T 2rfa_A 114 PHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR-AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELV 192 (232)
T ss_dssp TTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGC
T ss_pred ccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhcc
Confidence 23344455566666655555555555555555533 4455555555555555555554 55555554421 34
Q ss_pred ccCCCCcHHHHHHhcCCHHHHHHHHhCC
Q 039300 227 RDNSDRSILHVAAKHGNWNIVSFILKSP 254 (534)
Q Consensus 227 ~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~ 254 (534)
+|..|+||||+|+.+|+.+++++|++++
T Consensus 193 ~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 193 PNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 4444444555444444444444444443
No 39
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=4.3e-35 Score=273.94 Aligned_cols=215 Identities=21% Similarity=0.296 Sum_probs=172.4
Q ss_pred ccCCCCCcHhHHHHHhCcHHHHHHHHHcCCC---CCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCch
Q 039300 43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDSA---PSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELT 119 (534)
Q Consensus 43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t 119 (534)
.+|.+|.||||+|+..|+.+++++|++.+.. ..+..+..|.||||+|+..|+.+++++|+++|++
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------ 70 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCD------------ 70 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCC------------
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------
Confidence 4788999999999999999999999998763 2456788999999999999999999999988765
Q ss_pred HHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhh-----hcccC
Q 039300 120 LLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQL-----AYKRD 194 (534)
Q Consensus 120 ~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~-----~~~~~ 194 (534)
++..|..|.||||+|+..|+.+++++|++.+++. ....+
T Consensus 71 ------------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 114 (236)
T 1ikn_D 71 ------------------------------------PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN 114 (236)
T ss_dssp ------------------------------------SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred ------------------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence 2334456777777777777777788887777532 34567
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccC-CCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHH
Q 039300 195 CNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN-SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273 (534)
Q Consensus 195 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~ 273 (534)
..|.||||+|+..|+.+++++|++++++ ++.++. .|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+
T Consensus 115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~ 190 (236)
T 1ikn_D 115 YNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD---VNRVTYQGYSPYQL 190 (236)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC---SCCCCTTCCCGGGG
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcccCCCCCHHHH
Confidence 7889999999999999999999999888 777887 899999999999999999999998877 88889999999999
Q ss_pred HHhcCChhHHHHhhhCcccchh--hccccCCCCChHHHhHh
Q 039300 274 AAMGLHSDVVFTLSRHKSVNIR--AKNRSARNNTTLEIDEM 312 (534)
Q Consensus 274 A~~~~~~~~v~~Ll~~~~~~~~--~~n~~~~g~t~l~~a~~ 312 (534)
|+..++.+++++|+++ |++.. .++. +|.||.+.+..
T Consensus 191 A~~~~~~~~~~~Ll~~-ga~~~~~~~~~--~~~~~~~~~~~ 228 (236)
T 1ikn_D 191 TWGRPSTRIQQQLGQL-TLENLQMLPES--EDEESYDTESE 228 (236)
T ss_dssp CTTSSCHHHHHHHHTT-SCGGGSSCCCC--CTTTCCCCC--
T ss_pred HHccCchHHHHHHHHc-chhhhhcCCcc--chHHHHhhhcc
Confidence 9999999999999988 67766 6666 88898887765
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.2e-35 Score=291.44 Aligned_cols=253 Identities=16% Similarity=0.100 Sum_probs=198.8
Q ss_pred cCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcC--------------
Q 039300 12 IGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSY-------------- 77 (534)
Q Consensus 12 ~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~-------------- 77 (534)
....++|++|+++|++++. +|..|.|+++ |+.++|+.|+++|.++...
T Consensus 29 ~~~~dlv~~ll~~ga~i~~-------------~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~ 90 (327)
T 1sw6_A 29 TFTHDLTSDFLSSPLKIMK-------------ALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRN 90 (327)
T ss_dssp ECCTTCCCSTTTSSCCCEE-------------CBCCCCCCCH-----HHHHHHHHHHHHHHC------------------
T ss_pred hhcCchHHHHhhCCccccc-------------CCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhccccccc
Confidence 3456779999999998884 7888999988 8999999999998765420
Q ss_pred --CccCCCcHHHHHHHcCcHHHHHHHHhcCCCCccc-CCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChh
Q 039300 78 --INKAYQTPLSIAIDVRLNDIACFIIDKSSESLNA-TRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKD 154 (534)
Q Consensus 78 --~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 154 (534)
......+.+|.|+..+..+++++|++.+.+ ++. .+. .|.||||+|+..|+.++ ++.|++. +.
T Consensus 91 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~d-vn~~~d~-~g~TpLh~Aa~~g~~~~---------v~~Ll~~----Ga 155 (327)
T 1sw6_A 91 SEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLN-LNIPVDE-HGNTPLHWLTSIANLEL---------VKHLVKH----GS 155 (327)
T ss_dssp -------------CHHHHHHHHHHHCTTSCCC-SCSCCST-TCCCHHHHHHHTTCHHH---------HHHHHHT----TC
T ss_pred ccccCCccchhHHHHHhhHHHHHHHHHhcCCC-cccccCC-CCCcHHHHHHHcCCHHH---------HHHHHHc----CC
Confidence 111122345788888888999999999887 566 565 89999999999999998 7777775 36
Q ss_pred hhhcccCCCCcHHHHHHhCCC---HHHHHHHHhhchhhhcccCCCCCcHHHHHHH----cCcHHHHHHHHHh--------
Q 039300 155 LINRLDWHQRNPLHYAAASGN---VQMVQRLLEASKQLAYKRDCNGATPLHLAAE----NGELKVLKLLINK-------- 219 (534)
Q Consensus 155 ~~~~~d~~g~tpL~~A~~~g~---~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~----~g~~~~v~~Ll~~-------- 219 (534)
+++..|..|+||||+|+..|+ .++++.|++.+....+.+|..|.||||+|+. .|+.++++.|++.
T Consensus 156 d~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~ 235 (327)
T 1sw6_A 156 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKK 235 (327)
T ss_dssp CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHG
T ss_pred CCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcc
Confidence 788999999999999999988 6888888888754455789999999999999 8999999999987
Q ss_pred ------------CCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhh
Q 039300 220 ------------YPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLS 287 (534)
Q Consensus 220 ------------~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll 287 (534)
+.+ ++.+|..|+||||.|+. +++|++.+ +|.+|.+|+||||+|+..|+.+++++|+
T Consensus 236 ~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~~-----~n~~d~~G~TpLh~A~~~g~~~~v~~Ll 303 (327)
T 1sw6_A 236 QNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIANM-----LNAQDSNGDTCLNIAARLGNISIVDALL 303 (327)
T ss_dssp GGCCEEEC-----------------CHHHHHCS------HHHHHHHT-----TTCCCTTSCCHHHHHHHHCCHHHHHHHH
T ss_pred cchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHhC-----CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 555 88899999999999985 88898862 8999999999999999999999999999
Q ss_pred hCcccchhhccccCCCCChHHHhHh
Q 039300 288 RHKSVNIRAKNRSARNNTTLEIDEM 312 (534)
Q Consensus 288 ~~~~~~~~~~n~~~~g~t~l~~a~~ 312 (534)
++ |+|++.+|. .|+|||++|..
T Consensus 304 ~~-Gad~~~~d~--~G~TpL~~A~~ 325 (327)
T 1sw6_A 304 DY-GADPFIANK--SGLRPVDFGAG 325 (327)
T ss_dssp HT-TCCTTCCCT--TSCCGGGGTCC
T ss_pred Hc-CCCCcccCC--CCCCHHHHHHh
Confidence 98 899999999 99999999976
No 41
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1.4e-33 Score=271.17 Aligned_cols=236 Identities=17% Similarity=0.169 Sum_probs=204.8
Q ss_pred CcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhh
Q 039300 59 KHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQF 138 (534)
Q Consensus 59 g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~ 138 (534)
+..++.++|.+.+ + +..|..|.||||+|+..|+.+++++|+++|++ ++.. +|.||||+|+..|+.++
T Consensus 11 ~~~~v~~lL~~~~--~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~---~g~t~L~~A~~~g~~~~------ 77 (285)
T 3kea_A 11 KSKQLKSFLSSKD--T-FKADVHGHSASYYAIADNNVRLVCTLLNAGAL-KNLL---ENEFPLHQAATLEDTKI------ 77 (285)
T ss_dssp CHHHHHHHHHSTT--T-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGG-GSCC---TTCCHHHHHTTSSSCHH------
T ss_pred CHHHHHHHHHhCC--C-CccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCC---CCCCHHHHHHHcCCHHH------
Confidence 3455566665543 3 46799999999999999999999999999887 3333 58999999999999999
Q ss_pred HHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCC-CcHHHHHHHcCcHHHHHHHH
Q 039300 139 LQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNG-ATPLHLAAENGELKVLKLLI 217 (534)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~~v~~Ll 217 (534)
++.|++. +.+++..|..|.||||+|+..|+.+++++|+++|+++. ..+..| .||||+|+..|+.+++++|+
T Consensus 78 ---v~~Ll~~----ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~~~~~v~~Ll 149 (285)
T 3kea_A 78 ---VKILLFS----GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLNDVSIVSYFL 149 (285)
T ss_dssp ---HHHHHHT----TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTTCHHHHHHHH
T ss_pred ---HHHHHHC----CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 8888875 36788999999999999999999999999999999876 678888 89999999999999999999
Q ss_pred HhCCCccccccC-CCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcH-HHHHHhcCChhHHHHhhhCcccchh
Q 039300 218 NKYPDAIEIRDN-SDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTS-LHLAAMGLHSDVVFTLSRHKSVNIR 295 (534)
Q Consensus 218 ~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~~v~~Ll~~~~~~~~ 295 (534)
+++++. .+. .|+||||+|+..|+.+++++|+++|++ ++.+|..|+|| ||+|+..++.+++++|+++ |++++
T Consensus 150 ~~g~~~---~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad---~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~-gad~~ 222 (285)
T 3kea_A 150 SEIPST---FDLAILLSCIHITIKNGHVDMMILLLDYMTS---TNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIY 222 (285)
T ss_dssp TTSCTT---CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHH---TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS-CBCST
T ss_pred hCCCcc---ccccCCccHHHHHHHcChHHHHHHHHHcCCC---CCcccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCC
Confidence 999873 233 899999999999999999999999877 89999999998 9999999999999999998 89999
Q ss_pred hccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300 296 AKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL 338 (534)
Q Consensus 296 ~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~ 338 (534)
.+|. .+ .. ....+++++|+++|++...
T Consensus 223 ~~~~--~a-------~~-------~~~~~iv~~Ll~~g~~~~~ 249 (285)
T 3kea_A 223 SANL--EN-------VL-------LDDAEIAKMIIEKHVEYKS 249 (285)
T ss_dssp TTTG--GG-------GT-------TTCHHHHHHHHHHHHHHTT
T ss_pred CCCh--hh-------hh-------cCCHHHHHHHHHcCCCCCC
Confidence 8875 21 22 3367899999999998765
No 42
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-34 Score=282.62 Aligned_cols=246 Identities=13% Similarity=0.074 Sum_probs=189.1
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhh-h---cccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETL-F---GMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSS 76 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~-l---~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~ 76 (534)
.|.|+++ |+.++|+.|+++|++++........... . ..+.....+.+|.|+..+..+++++|++.|++++.
T Consensus 51 ~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~ 125 (327)
T 1sw6_A 51 SPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNI 125 (327)
T ss_dssp CCCCCCH-----HHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCS
T ss_pred CCCcccC-----chhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCccc
Confidence 3678877 9999999999999886641100000000 0 00111223456999999999999999999999874
Q ss_pred CCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcC---cchhhhhhhHHHHHHHHHHhCCCh
Q 039300 77 YINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQN---YDLSKSMQFLQFIDIMVKILGTNK 153 (534)
Q Consensus 77 ~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~~~~~~~~~~~~~ll~~~~~~~ 153 (534)
..|..|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++ .+. ++.+++.+.
T Consensus 126 ~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad-~n~~d~-~g~TpLh~A~~~g~~~~~~~---------~~~ll~~~~--- 191 (327)
T 1sw6_A 126 PVDEHGNTPLHWLTSIANLELVKHLVKHGSN-RLYGDN-MGESCLVKAVKSVNNYDSGT---------FEALLDYLY--- 191 (327)
T ss_dssp CCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTBCCT-TCCCHHHHHHHSSHHHHTTC---------HHHHHHHHG---
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCC-CCCCHHHHHHHhcccccHHH---------HHHHHHhhh---
Confidence 4799999999999999999999999999988 677776 99999999999988 677 888888876
Q ss_pred hhhhcccCCCCcHHHHHHh----CCCHHHHHHHHhh--------------------chhhhcccCCCCCcHHHHHHHcCc
Q 039300 154 DLINRLDWHQRNPLHYAAA----SGNVQMVQRLLEA--------------------SKQLAYKRDCNGATPLHLAAENGE 209 (534)
Q Consensus 154 ~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~--------------------~~~~~~~~~~~g~tpL~~A~~~g~ 209 (534)
..++..|..|+||||+|+. .|+.+++++|++. |+++. .++..|.||||.|+.
T Consensus 192 ~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~-~~~~~g~t~L~~a~~--- 267 (327)
T 1sw6_A 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN-DKNGERKDSILENLD--- 267 (327)
T ss_dssp GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS---
T ss_pred ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc-cccccCCChhHHHHH---
Confidence 6789999999999999999 9999999999988 45543 678899999999985
Q ss_pred HHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcC
Q 039300 210 LKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGL 278 (534)
Q Consensus 210 ~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~ 278 (534)
+++|+++ + ++.+|..|+||||+|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+++|
T Consensus 268 ---~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad---~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 268 ---LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD---PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp ---HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC---TTCCCTTSCCGGGGTCC--
T ss_pred ---HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHhcC
Confidence 8899988 3 788999999999999999999999999999987 9999999999999998764
No 43
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.6e-34 Score=270.16 Aligned_cols=221 Identities=17% Similarity=0.218 Sum_probs=190.3
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|+||||+||..|+.+++++|++.+.... ..++.+|..|.||||+|+..|+.++|++|+++|+++. ..|.
T Consensus 7 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~---------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~ 76 (236)
T 1ikn_D 7 DGDSFLHLAIIHEEKALTMEVIRQVKGDL---------AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDF 76 (236)
T ss_dssp CCCCTTHHHHHTTCSSSSSCCCC-----C---------CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCT
T ss_pred CCCchhHHHHHcCChhHHHHHHHHhhccH---------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCC
Confidence 48999999999999999999999876421 1344689999999999999999999999999998885 6789
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD 160 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d 160 (534)
.|.||||+|+..|+.+++++|++.+++. .. ...++..+
T Consensus 77 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~-----------------------------------------~~~~~~~~ 114 (236)
T 1ikn_D 77 RGNTPLHLACEQGCLASVGVLTQSCTTP-HL-----------------------------------------HSILKATN 114 (236)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHSTTTT-SS-----------------------------------------SCGGGCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhcccch-hH-----------------------------------------HHHhhccC
Confidence 9999999999999999999999988751 10 02356778
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCC-CCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 039300 161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDC-NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA 239 (534)
Q Consensus 161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 239 (534)
..|.||||+|+..|+.+++++|++.|+++. ..+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+
T Consensus 115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~ 192 (236)
T 1ikn_D 115 YNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTW 192 (236)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCT
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHH
Confidence 889999999999999999999999999876 5565 999999999999999999999999998 8999999999999999
Q ss_pred hcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHh
Q 039300 240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276 (534)
Q Consensus 240 ~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~ 276 (534)
.+|+.+++++|+++|++. ....++.+|.||.+.+..
T Consensus 193 ~~~~~~~~~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 193 GRPSTRIQQQLGQLTLEN-LQMLPESEDEESYDTESE 228 (236)
T ss_dssp TSSCHHHHHHHHTTSCGG-GSSCCCCCTTTCCCCC--
T ss_pred ccCchHHHHHHHHcchhh-hhcCCccchHHHHhhhcc
Confidence 999999999999999852 345788999998776553
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3.8e-33 Score=259.96 Aligned_cols=203 Identities=20% Similarity=0.232 Sum_probs=173.4
Q ss_pred CCCcHhHHHHHhCcHHHHHHHHHc-CCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHH
Q 039300 47 EGNTPLHNVVTKKHKRVIRILVEK-DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFV 125 (534)
Q Consensus 47 ~g~TpLh~A~~~g~~e~v~~Ll~~-g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~ 125 (534)
.|+||||.|+..|+.+++++|++. |.+++ ..|..|.||||+|+..|+.+++++|++++++...
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--------------- 65 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVH-QRGAMGETALHIAALYDNLEAAMVLMEAAPELVF--------------- 65 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG---------------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc---------------
Confidence 589999999999999999999998 77764 6799999999999999999999999999876211
Q ss_pred HhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhccc------------
Q 039300 126 MRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKR------------ 193 (534)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~------------ 193 (534)
...+..|..|.||||+|+..|+.+++++|++.|+++....
T Consensus 66 ----------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~ 117 (232)
T 2rfa_A 66 ----------------------------EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117 (232)
T ss_dssp ----------------------------CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCS
T ss_pred ----------------------------ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeeccccc
Confidence 1124456678888888888888888888888888765321
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHH----HHHHhCCcccc---cccccCCC
Q 039300 194 DCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIV----SFILKSPEMEN---LINLIDRN 266 (534)
Q Consensus 194 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~----~~Ll~~~~~~~---~~~~~d~~ 266 (534)
|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++ ++|++.+++.. +.+.+|..
T Consensus 118 ~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~ 196 (232)
T 2rfa_A 118 IYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ 196 (232)
T ss_dssp CCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTT
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCC
Confidence 23799999999999999999999999998 899999999999999999999988 99999987531 12689999
Q ss_pred CCcHHHHHHhcCChhHHHHhhhCcccchh
Q 039300 267 GNTSLHLAAMGLHSDVVFTLSRHKSVNIR 295 (534)
Q Consensus 267 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~ 295 (534)
|+||||+|+..|+.+++++|+++ |.+..
T Consensus 197 g~tpl~~A~~~g~~~~v~~Ll~~-g~~~~ 224 (232)
T 2rfa_A 197 GLTPFKLAGVEGNIVMFQHLMQK-RKHIA 224 (232)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHH-HHHC-
T ss_pred CCCHHHHHHHcCCHHHHHHHHhc-Cccch
Confidence 99999999999999999999998 44443
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=2.9e-32 Score=247.96 Aligned_cols=190 Identities=25% Similarity=0.304 Sum_probs=106.4
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCc-cccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVP-AVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~-~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
|.||||.||..|+.+.++.|++.+. +++ .+|..|.||||+|+..|+.+++++|+++|+++. ..+.
T Consensus 5 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~ 70 (201)
T 3hra_A 5 EVGALLEAANQRDTKKVKEILQDTTYQVD-------------EVDTEGNTPLNIAVHNNDIEIAKALIDRGADIN-LQNS 70 (201)
T ss_dssp CTTHHHHHHHTTCHHHHHHHHTCTTCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCT
T ss_pred cccHHHHHHHhccHHHHHHHHHcCCCCCC-------------CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCC
Confidence 5566666666666666666666554 333 355566666666666666666666666665553 4455
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD 160 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d 160 (534)
.|.||||+|+..|+.+++++|++.+.. .++..|
T Consensus 71 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~-----------------------------------------------~~~~~~ 103 (201)
T 3hra_A 71 ISDSPYLYAGAQGRTEILAYMLKHATP-----------------------------------------------DLNKHN 103 (201)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSCC-----------------------------------------------CTTCCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHhccCc-----------------------------------------------cccccc
Confidence 566666666666666666666643332 123334
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCc-----HHHHHHHHHhCCCccccccCCCCcHH
Q 039300 161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE-----LKVLKLLINKYPDAIEIRDNSDRSIL 235 (534)
Q Consensus 161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~~~~~~~~~d~~g~t~L 235 (534)
..|.||||+|+..|+.+++++|++.|....+.+|..|.||||+|+..++ .+++++|+++|++ ++.+|..|+|||
T Consensus 104 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l 182 (201)
T 3hra_A 104 RYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD-QSIKDNSGRTAM 182 (201)
T ss_dssp TTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC-CCccCCCCCCHH
Confidence 4455555555555555555555555522223445555555555555554 5555555555555 455555555555
Q ss_pred HHHHhcCCHHHHHHHHhC
Q 039300 236 HVAAKHGNWNIVSFILKS 253 (534)
Q Consensus 236 h~A~~~~~~~~~~~Ll~~ 253 (534)
|+|+.+|+.+++++|+++
T Consensus 183 ~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 183 DYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHHTCHHHHHHHHTC
T ss_pred HHHHHcCCHhHHHHHHhc
Confidence 555555555555555544
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=4.9e-32 Score=246.49 Aligned_cols=193 Identities=20% Similarity=0.285 Sum_probs=172.6
Q ss_pred CCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHH
Q 039300 46 IEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFV 125 (534)
Q Consensus 46 ~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~ 125 (534)
..+.||||.|+..|+.++++.|++.++...+..|..|.||||+|+..|+.+++++|+++|++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------ 64 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD------------------ 64 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC------------------
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------------
Confidence 46789999999999999999999988744457788899999999999999999999988765
Q ss_pred HhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHH
Q 039300 126 MRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA 205 (534)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~ 205 (534)
++..|..|.||||+|+..|+.+++++|++.+....+..|..|.||||.|+
T Consensus 65 ------------------------------~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~ 114 (201)
T 3hra_A 65 ------------------------------INLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAA 114 (201)
T ss_dssp ------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH
T ss_pred ------------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHH
Confidence 23455678899999999999999999996666555678999999999999
Q ss_pred HcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCC-----HHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCCh
Q 039300 206 ENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGN-----WNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHS 280 (534)
Q Consensus 206 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-----~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~ 280 (534)
..|+.+++++|++.++..++.+|..|+||||+|+..++ .+++++|++.|++ ++.+|..|+||||+|+..|+.
T Consensus 115 ~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~ 191 (201)
T 3hra_A 115 EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGAD---QSIKDNSGRTAMDYANQKGYT 191 (201)
T ss_dssp HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCH
T ss_pred HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCC---CCccCCCCCCHHHHHHHcCCH
Confidence 99999999999999955599999999999999999998 9999999999887 899999999999999999999
Q ss_pred hHHHHhhhC
Q 039300 281 DVVFTLSRH 289 (534)
Q Consensus 281 ~~v~~Ll~~ 289 (534)
+++++|+++
T Consensus 192 ~~~~~Ll~~ 200 (201)
T 3hra_A 192 EISKILAQY 200 (201)
T ss_dssp HHHHHHHTC
T ss_pred hHHHHHHhc
Confidence 999999986
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=100.00 E-value=5.4e-33 Score=263.06 Aligned_cols=98 Identities=15% Similarity=0.123 Sum_probs=83.3
Q ss_pred CCCCHHHHHHhcCCHH----HHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHh---CcHHHHHHHHHcCCC
Q 039300 1 MDETPLHIAARIGDHA----IVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTK---KHKRVIRILVEKDSA 73 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~---g~~e~v~~Ll~~g~~ 73 (534)
+|+||||.||+.|+.+ ++++|++.|++++.. ...+|..|.||||+|+.+ |+.++|++|++.|++
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~---------~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDS---------AYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSG---------GGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccc---------cccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence 6999999999999997 667777788887731 012689999999999999 999999999999877
Q ss_pred CCcC----------CccCCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 039300 74 PSSY----------INKAYQTPLSIAIDVRLNDIACFIIDKSSE 107 (534)
Q Consensus 74 ~~~~----------~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 107 (534)
+... .|..|.||||+|+..|+.+++++|+++|++
T Consensus 72 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 115 (256)
T 2etb_A 72 SGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD 115 (256)
T ss_dssp TTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 6422 246799999999999999999999999887
No 48
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=100.00 E-value=6.7e-33 Score=265.05 Aligned_cols=220 Identities=19% Similarity=0.228 Sum_probs=173.9
Q ss_pred ccCCCCCcHhHHHHHhCcHHHHHHHHHc----CCCCCc---CCccCCCcHHHHHHHc---CcHHHHHHHHhcCCCCcccC
Q 039300 43 MRDIEGNTPLHNVVTKKHKRVIRILVEK----DSAPSS---YINKAYQTPLSIAIDV---RLNDIACFIIDKSSESLNAT 112 (534)
Q Consensus 43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~----g~~~~~---~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~ 112 (534)
..|..|.||||.|++.|+.++|+.|++. ++++.. ..+..|.||||+|+.. |+.+++++|++++++...
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~-- 85 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDS-- 85 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTC--
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccc--
Confidence 4789999999999999999999998874 444432 3578999999999987 999999999999875200
Q ss_pred CCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcc
Q 039300 113 RLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYK 192 (534)
Q Consensus 113 ~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~ 192 (534)
++.++. ......|..|.||||+|+..|+.+++++|++.|+++. .
T Consensus 86 -----------------------------~~~~i~------~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~ 129 (273)
T 2pnn_A 86 -----------------------------LKQFVN------ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-A 129 (273)
T ss_dssp -----------------------------HHHHHT------CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred -----------------------------hhHHhh------cccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-c
Confidence 111111 1123456789999999999999999999999999876 4
Q ss_pred cCC--------------CCCcHHHHHHHcCcHHHHHHHHH---hCCCccccccCCCCcHHHHHHhcCC---------HHH
Q 039300 193 RDC--------------NGATPLHLAAENGELKVLKLLIN---KYPDAIEIRDNSDRSILHVAAKHGN---------WNI 246 (534)
Q Consensus 193 ~~~--------------~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~ 246 (534)
.+. .|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..|+ .++
T Consensus 130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~ 208 (273)
T 2pnn_A 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208 (273)
T ss_dssp CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence 454 79999999999999999999999 7888 89999999999999999998 799
Q ss_pred HHHHHhCCccccccc-------ccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCCh
Q 039300 247 VSFILKSPEMENLIN-------LIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTT 306 (534)
Q Consensus 247 ~~~Ll~~~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~ 306 (534)
+++|++.|++ +| .+|..|+||||+|+..|+.+++++|++++..|+..... .+.+|
T Consensus 209 v~~Ll~~ga~---~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~--~~~~~ 270 (273)
T 2pnn_A 209 YNEILILGAK---LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHA--AAHHH 270 (273)
T ss_dssp HHHHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHhhhh---cccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhh--hhhhc
Confidence 9999999876 54 58999999999999999999999999984337777666 55544
No 49
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=1.1e-31 Score=254.12 Aligned_cols=200 Identities=21% Similarity=0.250 Sum_probs=176.9
Q ss_pred CCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc----ccCCCCcHHHHHHhC---CCHHHHHHHHhhchh
Q 039300 116 DELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR----LDWHQRNPLHYAAAS---GNVQMVQRLLEASKQ 188 (534)
Q Consensus 116 ~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~----~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~ 188 (534)
.|+||||.|+..|+.+. ++.+++.+.+.+.+++. .|..|+||||+|+.. |+.+++++|++.|++
T Consensus 1 ~G~t~L~~A~~~g~~~~---------v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEE---------LTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp CCHHHHHHHHHHTCGGG---------GTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHH
T ss_pred CCccHHHHHHHcCCHHH---------HHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCc
Confidence 47899999999999998 55556655444567777 899999999999999 999999999999987
Q ss_pred hhcc----------cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC-------------CCcHHHHHHhcCCHH
Q 039300 189 LAYK----------RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNS-------------DRSILHVAAKHGNWN 245 (534)
Q Consensus 189 ~~~~----------~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~~~~~ 245 (534)
.... .|..|.||||+|+..|+.+++++|++++++ ++..|.. |+||||+|+..|+.+
T Consensus 72 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~ 150 (256)
T 2etb_A 72 SGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD-VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWD 150 (256)
T ss_dssp TTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHH
T ss_pred ccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 6422 246799999999999999999999999998 7888876 999999999999999
Q ss_pred HHHHHHh---CCcccccccccCCCCCcHHHHHHh--cCChh-------HHHHhhhCcccch-------hhccccCCCCCh
Q 039300 246 IVSFILK---SPEMENLINLIDRNGNTSLHLAAM--GLHSD-------VVFTLSRHKSVNI-------RAKNRSARNNTT 306 (534)
Q Consensus 246 ~~~~Ll~---~~~~~~~~~~~d~~g~t~Lh~A~~--~~~~~-------~v~~Ll~~~~~~~-------~~~n~~~~g~t~ 306 (534)
++++|++ .|++ +|.+|.+|+||||+|+. .++.+ ++++|+++ |+++ +.+|. .|.||
T Consensus 151 ~v~~Ll~~~~~ga~---~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~-ga~~~~~~~~~~~~d~--~g~tp 224 (256)
T 2etb_A 151 VVTYLLENPHQPAS---LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM-GARLCPTVQLEEISNH--QGLTP 224 (256)
T ss_dssp HHHHHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHSTTCCGGGCCCT--TSCCH
T ss_pred HHHHHHhccccCCC---cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc-CCCcccccccccccCC--CCCCH
Confidence 9999999 7776 99999999999999999 78888 99999998 7999 89999 99999
Q ss_pred HHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300 307 LEIDEMTRADVTEVQKHLTLKALKTAYAKRAL 338 (534)
Q Consensus 307 l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~ 338 (534)
|++|.. ....+++++|+++|+...+
T Consensus 225 L~~A~~-------~g~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 225 LKLAAK-------EGKIEIFRHILQREFSGAA 249 (256)
T ss_dssp HHHHHH-------TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------hCCHHHHHHHHhCCCCCCC
Confidence 999998 5578899999999987644
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.1e-30 Score=229.50 Aligned_cols=155 Identities=31% Similarity=0.466 Sum_probs=97.5
Q ss_pred HHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCc
Q 039300 5 PLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQT 84 (534)
Q Consensus 5 ~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~t 84 (534)
+|+.||+.|+.++|+.|+++|+++|. +|.+|.||||+|+..++.+++++|+++|+++. ..|.+|.|
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~-------------~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~T 72 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADVNA-------------SDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRT 72 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTC-------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCC
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCC-------------cCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCC
Confidence 57777777777777777777776663 66777777777777777777777777776664 55667777
Q ss_pred HHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCC
Q 039300 85 PLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQR 164 (534)
Q Consensus 85 pL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~ 164 (534)
|||+|+..|+.+++++|+++|++ ++.+|.+|+
T Consensus 73 pLh~A~~~g~~~~v~~Ll~~gad------------------------------------------------vn~~d~~G~ 104 (169)
T 4gpm_A 73 PLHHAAENGHKEVVKLLISKGAD------------------------------------------------VNAKDSDGR 104 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC------------------------------------------------TTCCCTTSC
T ss_pred HHHHHHHcCCHHHHHHHHHCcCC------------------------------------------------CCCCCCCCC
Confidence 77777777777777777766654 223344455
Q ss_pred cHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCC
Q 039300 165 NPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222 (534)
Q Consensus 165 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 222 (534)
||||+|+..|+.+++++|++.|+++. .+|..|.||||+|++.|+.+++++|+++|++
T Consensus 105 TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ 161 (169)
T 4gpm_A 105 TPLHHAAENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAREHGNEEVVKLLEKQGGW 161 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHTC---
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 55555555555555555555555543 4455555555555555555555555555554
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=1.2e-31 Score=254.30 Aligned_cols=204 Identities=17% Similarity=0.241 Sum_probs=172.4
Q ss_pred CCCCCcHhHHHHHhCcHHHHHHHH----HcCCCCCcC---CccCCCcHHHHHH---HcCcHHHHHHHHhcCCCCcccCCC
Q 039300 45 DIEGNTPLHNVVTKKHKRVIRILV----EKDSAPSSY---INKAYQTPLSIAI---DVRLNDIACFIIDKSSESLNATRL 114 (534)
Q Consensus 45 d~~g~TpLh~A~~~g~~e~v~~Ll----~~g~~~~~~---~~~~g~tpL~~A~---~~g~~~iv~~Ll~~~~~~~~~~~~ 114 (534)
|..|.||||.|++.|+.+.++.|+ +.|+++... .+..|.||||+|+ ..|+.+++++|++.+++...
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~---- 77 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGN---- 77 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTC----
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccc----
Confidence 467899999999999999655544 488877532 2367999999999 67999999999998875210
Q ss_pred CCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccC
Q 039300 115 PDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRD 194 (534)
Q Consensus 115 ~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 194 (534)
...++. ...+..|..|+||||+|+..|+.+++++|++.|+++. ..+
T Consensus 78 ---------------------------~~~~~~------~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~ 123 (260)
T 3jxi_A 78 ---------------------------MREFIN------SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQA 123 (260)
T ss_dssp ---------------------------HHHHHT------CCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred ---------------------------hHhhhc------ccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccc
Confidence 111111 3355667789999999999999999999999999876 455
Q ss_pred --------------CCCCcHHHHHHHcCcHHHHHHHHH---hCCCccccccCCCCcHHHHHHhcCC---------HHHHH
Q 039300 195 --------------CNGATPLHLAAENGELKVLKLLIN---KYPDAIEIRDNSDRSILHVAAKHGN---------WNIVS 248 (534)
Q Consensus 195 --------------~~g~tpL~~A~~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~~~ 248 (534)
..|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..++ .++++
T Consensus 124 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~ 202 (260)
T 3jxi_A 124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYD 202 (260)
T ss_dssp EECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHH
T ss_pred cccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHH
Confidence 579999999999999999999999 7888 89999999999999999887 79999
Q ss_pred HHHhCCcccccc-------cccCCCCCcHHHHHHhcCChhHHHHhhhCc
Q 039300 249 FILKSPEMENLI-------NLIDRNGNTSLHLAAMGLHSDVVFTLSRHK 290 (534)
Q Consensus 249 ~Ll~~~~~~~~~-------~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 290 (534)
+|++.|++ + +.+|..|+||||+|+..|+.+++++|++++
T Consensus 203 ~Ll~~ga~---~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 203 LLLIKCAK---LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHHHHHHH---HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCcc---cccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 99999876 5 789999999999999999999999999984
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=2.9e-30 Score=226.85 Aligned_cols=136 Identities=35% Similarity=0.502 Sum_probs=118.6
Q ss_pred hhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcH
Q 039300 155 LINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSI 234 (534)
Q Consensus 155 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 234 (534)
++|.+|..|+||||+|+..++.++++.|++.|+++. .+|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||
T Consensus 29 dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-vn~~d~~G~Tp 106 (169)
T 4gpm_A 29 DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKGAD-VNAKDSDGRTP 106 (169)
T ss_dssp CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCH
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCCCCCCCCH
Confidence 356677789999999999999999999999999865 6788999999999999999999999999998 89999999999
Q ss_pred HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhh
Q 039300 235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRA 296 (534)
Q Consensus 235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~ 296 (534)
||+|+.+|+.+++++|++.|++ ++.+|.+|+||||+|+..|+.+++++|+++ |++++.
T Consensus 107 Lh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~-GA~ie~ 164 (169)
T 4gpm_A 107 LHHAAENGHKEVVKLLISKGAD---VNTSDSDGRTPLDLAREHGNEEVVKLLEKQ-GGWLEH 164 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-------
T ss_pred HHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcCC
Confidence 9999999999999999999887 899999999999999999999999999998 777764
No 53
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=1.6e-30 Score=248.59 Aligned_cols=198 Identities=20% Similarity=0.226 Sum_probs=173.3
Q ss_pred CCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhh----cccCCCCcHHHHHHhC---CCHHHHHHHHhhchh
Q 039300 116 DELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLIN----RLDWHQRNPLHYAAAS---GNVQMVQRLLEASKQ 188 (534)
Q Consensus 116 ~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~ 188 (534)
.|.||||.|+..|+.++ ++.+++...+.+..++ ..|..|+||||+|+.. |+.+++++|++.|++
T Consensus 12 ~g~t~L~~A~~~g~~~~---------v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~ 82 (273)
T 2pnn_A 12 YDRRSIFDAVAQSNCQE---------LESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARK 82 (273)
T ss_dssp CCHHHHHHHHHTTCSST---------TTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHcCCHHH---------HHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcc
Confidence 89999999999999999 7777776544444444 4588999999999987 999999999999986
Q ss_pred hhc------c----cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccC--------------CCCcHHHHHHhcCCH
Q 039300 189 LAY------K----RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDN--------------SDRSILHVAAKHGNW 244 (534)
Q Consensus 189 ~~~------~----~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~~~~ 244 (534)
... . .|..|.||||+|+..|+.+++++|++++++ ++.++. .|+||||+|+..|+.
T Consensus 83 ~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 161 (273)
T 2pnn_A 83 TDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD-VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQL 161 (273)
T ss_dssp TTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCH
T ss_pred ccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cCccccccccccccccccccCCCCHHHHHHHcCCH
Confidence 321 1 466899999999999999999999999998 788886 799999999999999
Q ss_pred HHHHHHHh---CCcccccccccCCCCCcHHHHHHhcCC---------hhHHHHhhhCcccchh-------hccccCCCCC
Q 039300 245 NIVSFILK---SPEMENLINLIDRNGNTSLHLAAMGLH---------SDVVFTLSRHKSVNIR-------AKNRSARNNT 305 (534)
Q Consensus 245 ~~~~~Ll~---~~~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~~-------~~n~~~~g~t 305 (534)
+++++|++ .|++ ++.+|.+|+||||+|+..++ .+++++|+++ |++++ .+|. .|.|
T Consensus 162 ~~v~~Ll~~~~~gad---~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~--~g~T 235 (273)
T 2pnn_A 162 AIVKFLLQNSWQPAD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNR--KGLT 235 (273)
T ss_dssp HHHHHHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCT--TSCC
T ss_pred HHHHHHHhcccCCCC---ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCC--CCCC
Confidence 99999999 7776 99999999999999999998 7899999998 78986 4888 9999
Q ss_pred hHHHhHhhhhchHHHHHHhHHHHHHHHhhhc
Q 039300 306 TLEIDEMTRADVTEVQKHLTLKALKTAYAKR 336 (534)
Q Consensus 306 ~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~ 336 (534)
||++|.. ..+.+++++|+++|++.
T Consensus 236 pL~~A~~-------~g~~~iv~~Ll~~ga~d 259 (273)
T 2pnn_A 236 PLALAAS-------SGKIGVLAYILQREIHE 259 (273)
T ss_dssp HHHHHHH-------TTCHHHHHHHHHHHTC-
T ss_pred HHHHHHH-------hChHHHHHHHHHCCCCC
Confidence 9999998 55788999999999953
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=4.6e-30 Score=243.43 Aligned_cols=202 Identities=19% Similarity=0.157 Sum_probs=173.5
Q ss_pred CCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc----CCCCcHHHHHH---hCCCHHHHHHHHhhchh
Q 039300 116 DELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD----WHQRNPLHYAA---ASGNVQMVQRLLEASKQ 188 (534)
Q Consensus 116 ~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d----~~g~tpL~~A~---~~g~~~~v~~Ll~~~~~ 188 (534)
.++++||.|+..|+.+. ++.+++.+.+.+..++..+ ..|.||||+|+ ..|+.+++++|++.|++
T Consensus 4 ~~~~~L~~A~~~g~~~~---------v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~ 74 (260)
T 3jxi_A 4 FNRPILFDIVSRGSPDG---------LEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEK 74 (260)
T ss_dssp CCHHHHHHHHHHTCGGG---------GTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHH
T ss_pred chHHHHHHHHHhCCHHH---------HHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhccc
Confidence 78899999999999998 6666664443345555444 77999999999 77999999999999875
Q ss_pred hh----------cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc--------------CCCCcHHHHHHhcCCH
Q 039300 189 LA----------YKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD--------------NSDRSILHVAAKHGNW 244 (534)
Q Consensus 189 ~~----------~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~~~~ 244 (534)
.. ...|..|.||||+|+..|+.+++++|++++++ ++..| ..|+||||+|+..|+.
T Consensus 75 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~ 153 (260)
T 3jxi_A 75 TGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD-VHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQP 153 (260)
T ss_dssp TTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCH
T ss_pred ccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC-cCccccccccCcccccccccCCCCHHHHHHHcCCH
Confidence 32 12345899999999999999999999999998 78888 6899999999999999
Q ss_pred HHHHHHHh---CCcccccccccCCCCCcHHHHHHhcCC---------hhHHHHhhhCcccch-------hhccccCCCCC
Q 039300 245 NIVSFILK---SPEMENLINLIDRNGNTSLHLAAMGLH---------SDVVFTLSRHKSVNI-------RAKNRSARNNT 305 (534)
Q Consensus 245 ~~~~~Ll~---~~~~~~~~~~~d~~g~t~Lh~A~~~~~---------~~~v~~Ll~~~~~~~-------~~~n~~~~g~t 305 (534)
+++++|++ .+++ ++.+|..|+||||+|+..++ .+++++|+++ |+++ +.+|. .|.|
T Consensus 154 ~~v~~Ll~~~~~ga~---~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~--~g~t 227 (260)
T 3jxi_A 154 HIVHYLTENGHKQAD---LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNN--DGLS 227 (260)
T ss_dssp HHHHHHHHCSSCCCC---TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCT--TSCC
T ss_pred HHHHHHHhccccCCC---CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccC--CCCC
Confidence 99999999 7766 99999999999999999888 6899999998 7898 77999 9999
Q ss_pred hHHHhHhhhhchHHHHHHhHHHHHHHHhhhccCCH
Q 039300 306 TLEIDEMTRADVTEVQKHLTLKALKTAYAKRALSA 340 (534)
Q Consensus 306 ~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~~~ 340 (534)
||++|.. ..+.+++++|+++|+...++.
T Consensus 228 pL~~A~~-------~g~~~~v~~Ll~~g~~~~~~~ 255 (260)
T 3jxi_A 228 PLMMAAK-------TGKIGIFQHIIRREIADAAAH 255 (260)
T ss_dssp HHHHHHH-------TTCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHH-------cCCHHHHHHHHHhCCCccccc
Confidence 9999998 557889999999999876643
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1e-29 Score=243.07 Aligned_cols=196 Identities=19% Similarity=0.261 Sum_probs=115.5
Q ss_pred CcHhHHHHHhCcHHHHHHHHHcCCC-CCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHh
Q 039300 49 NTPLHNVVTKKHKRVIRILVEKDSA-PSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMR 127 (534)
Q Consensus 49 ~TpLh~A~~~g~~e~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~ 127 (534)
.+++|.|+..|+.+.++.+++.+.+ ..+..|..|.||||+|+..|+.+++++|++.++..++..+. .|.||||.|+..
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~g~tpL~~a~~~ 155 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNR-AGYSPIMLTALA 155 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCT-TSCCHHHHGGGC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCC-CCCCHHHHHHHH
Confidence 4566666666666666666655433 12344566666666666666666666666666532333222 333333333211
Q ss_pred cCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc
Q 039300 128 QNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN 207 (534)
Q Consensus 128 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 207 (534)
... ..++.++++.|++.|.... ..+..|.||||+|+..
T Consensus 156 ~~~-----------------------------------------~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh~A~~~ 193 (276)
T 4hbd_A 156 TLK-----------------------------------------TQDDIETVLQLFRLGNINA-KASQAGQTALMLAVSH 193 (276)
T ss_dssp CCC-----------------------------------------SHHHHHHHHHHHHHSCTTC-CCTTTCCCHHHHHHHT
T ss_pred Hhh-----------------------------------------hhhhHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHc
Confidence 000 2244555666666664432 4555666666666666
Q ss_pred CcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHh-CCcccccccccCCCCCcHHHHHHhcCChhHHHHh
Q 039300 208 GELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILK-SPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTL 286 (534)
Q Consensus 208 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~-~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~L 286 (534)
|+.+++++|++.|++ ++.+|..|+||||+|+..|+.+++++|++ .|++ ++.+|.+|+||||+|+..|+.+++++|
T Consensus 194 g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad---~~~~d~~g~TpL~~A~~~g~~~iv~~L 269 (276)
T 4hbd_A 194 GRVDVVKALLACEAD-VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD---ISLTDRDGSTALMVALDAGQSEIASML 269 (276)
T ss_dssp TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC---CcCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 666666666666666 66666677777777777777777777776 5554 666677777777777777777777777
Q ss_pred hhCcc
Q 039300 287 SRHKS 291 (534)
Q Consensus 287 l~~~~ 291 (534)
+++.+
T Consensus 270 l~~~~ 274 (276)
T 4hbd_A 270 YSRMN 274 (276)
T ss_dssp HHHCC
T ss_pred HhccC
Confidence 66544
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.7e-29 Score=241.47 Aligned_cols=180 Identities=20% Similarity=0.230 Sum_probs=160.2
Q ss_pred CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCC
Q 039300 83 QTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWH 162 (534)
Q Consensus 83 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~ 162 (534)
.+++|.|+..|+.+.++.+++.+.+ ..+|..|.+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~----------------------------------------------~~~n~~d~~ 110 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLD----------------------------------------------YVVNIADSN 110 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHH----------------------------------------------HHHTCCCTT
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHh----------------------------------------------hcCcCCCCC
Confidence 4678899999999999999986543 346778889
Q ss_pred CCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHH-----HcCcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAA-----ENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237 (534)
Q Consensus 163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~-----~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 237 (534)
|+||||+|+..|+.+++++|++.|+...+..|..|.||||+|+ ..++.++++.|++.+.+ .+..|..|+||||+
T Consensus 111 g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~-~~~~~~~g~tpLh~ 189 (276)
T 4hbd_A 111 GNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI-NAKASQAGQTALML 189 (276)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT-TCCCTTTCCCHHHH
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC-ccccCCCCCCHHHH
Confidence 9999999999999999999999998455578999999999999 67899999999999977 77888899999999
Q ss_pred HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhh
Q 039300 238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTR 314 (534)
Q Consensus 238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~ 314 (534)
|+.+|+.+++++|++.|++ +|.+|.+|+||||+|+..|+.+++++|++..|+|++.+|. .|.|||++|....
T Consensus 190 A~~~g~~~~v~~Ll~~gad---~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~--~g~TpL~~A~~~g 261 (276)
T 4hbd_A 190 AVSHGRVDVVKALLACEAD---VNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDR--DGSTALMVALDAG 261 (276)
T ss_dssp HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCT--TSCCHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHhCCCC---CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCC--CCCCHHHHHHHcC
Confidence 9999999999999999887 8999999999999999999999999999966899999999 9999999998743
No 57
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.1e-31 Score=247.09 Aligned_cols=206 Identities=17% Similarity=0.123 Sum_probs=166.6
Q ss_pred HHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHH
Q 039300 18 VSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDI 97 (534)
Q Consensus 18 v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~i 97 (534)
++.|+++|++++.. +..+..|.||||.|+..|+.++|++|++.|++++ ..|..|.||||+|+..|+.++
T Consensus 1 v~~ll~~~~~~~~~----------~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~ 69 (229)
T 2vge_A 1 MRSVLRKAGSPRKA----------RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSI 69 (229)
T ss_dssp ---------CCCCC----------CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHH
T ss_pred CeehhccCCCCccc----------cccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHH
Confidence 46788888887642 2356778899999999999999999999998875 678999999999999999999
Q ss_pred HHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHH
Q 039300 98 ACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ 177 (534)
Q Consensus 98 v~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~ 177 (534)
+++|++.|++ ++..|..|+||||+|+..|+.+
T Consensus 70 v~~Ll~~ga~------------------------------------------------~n~~d~~g~tpLh~A~~~g~~~ 101 (229)
T 2vge_A 70 VDFLITAGAN------------------------------------------------VNSPDSHGWTPLHCAASCNDTV 101 (229)
T ss_dssp HHHHHHTTCC------------------------------------------------TTCCCTTCCCHHHHHHHTTCHH
T ss_pred HHHHHHCCCC------------------------------------------------CCCCCCCCCCHHHHHHHcCCHH
Confidence 9999988765 3445667899999999999999
Q ss_pred HHHHHHhhchhhhcccCCCCCcHHHHH--HHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCc
Q 039300 178 MVQRLLEASKQLAYKRDCNGATPLHLA--AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255 (534)
Q Consensus 178 ~v~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~ 255 (534)
++++|++.|+++....+..|.||||+| +..|+.+++++|++.+++ ++..|..|.|+++.++..+.. ++|++.|+
T Consensus 102 ~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~ll~~ga 177 (229)
T 2vge_A 102 ICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWDYSAEFGD---ELSFREGE 177 (229)
T ss_dssp HHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSCBCCSSTT---BCCBCTTC
T ss_pred HHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHHHhhcccc---ccCccccc
Confidence 999999999987754457999999999 999999999999999998 888999999999966555433 56777765
Q ss_pred ccccccccCCCCCcHHHHHHhcCChhHHHHhh
Q 039300 256 MENLINLIDRNGNTSLHLAAMGLHSDVVFTLS 287 (534)
Q Consensus 256 ~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll 287 (534)
+ ..++.+|.+|+||||+|+..|+.++++.++
T Consensus 178 ~-~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~ 208 (229)
T 2vge_A 178 S-VTVLRRDGPEETDWWWAALHGQEGYVPRNY 208 (229)
T ss_dssp E-EEEEESSCTTCSSEEEEEETTEEEEEEGGG
T ss_pred c-ccccccCCCcccHHHHHHHcCCcceeehhh
Confidence 3 347889999999999999999999987644
No 58
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=3.2e-28 Score=213.12 Aligned_cols=156 Identities=21% Similarity=0.245 Sum_probs=92.5
Q ss_pred CCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCC
Q 039300 3 ETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAY 82 (534)
Q Consensus 3 ~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g 82 (534)
.||||.|++.|+.+++++|+++|++++ .+|..|.||||+|+. |+.+++++|+++|+++. ..+..|
T Consensus 6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~-------------~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g 70 (162)
T 1ihb_A 6 GNELASAAARGDLEQLTSLLQNNVNVN-------------AQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTG 70 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTSCCCTT-------------CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTS
T ss_pred hhHHHHHHHcCCHHHHHHHHhCCCCcc-------------ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCC
Confidence 466666666666666666666666555 256666666666666 66666666666666553 456666
Q ss_pred CcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCC
Q 039300 83 QTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWH 162 (534)
Q Consensus 83 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~ 162 (534)
.||||+|+..|+.+++++|++++++ ++..|..
T Consensus 71 ~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------------~~~~~~~ 102 (162)
T 1ihb_A 71 FAVIHDAARAGFLDTLQTLLEFQAD------------------------------------------------VNIEDNE 102 (162)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHTTCC------------------------------------------------TTCCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCC------------------------------------------------CCCcCCC
Confidence 6666666666666666666665543 2223334
Q ss_pred CCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCC
Q 039300 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYP 221 (534)
Q Consensus 163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 221 (534)
|.||||+|+..|+.+++++|++.|++..+..|..|.||||+|+..|+.+++++|+++|+
T Consensus 103 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 55555555555555555555555554333455555555555555555555555555554
No 59
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=3.5e-28 Score=215.17 Aligned_cols=138 Identities=22% Similarity=0.201 Sum_probs=68.6
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300 161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240 (534)
Q Consensus 161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 240 (534)
..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+.
T Consensus 34 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 111 (172)
T 3v30_A 34 ERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGGYTDIVGLLLERDVD-INIYDWNGGTPLLYAVR 111 (172)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence 344444444444444444444444444432 3344455555555555555555555555554 45555555555555555
Q ss_pred cCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCCh
Q 039300 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTT 306 (534)
Q Consensus 241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~ 306 (534)
.|+.+++++|++.|++ ++.+|..|+||||+|+..++.+++++|+++ ++++..+|. .|.||
T Consensus 112 ~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~-~~~~~~~~~--~~~~p 171 (172)
T 3v30_A 112 GNHVKCVEALLARGAD---LTTEADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNL--VPADP 171 (172)
T ss_dssp TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHHHSCC---------
T ss_pred cCCHHHHHHHHHcCCC---ccccCCCCCCHHHHHHHhCcHHHHHHHHHH-HHHHhcccC--CCCCC
Confidence 5555555555555544 555555555555555555555555555555 455555555 55544
No 60
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=5.9e-28 Score=212.61 Aligned_cols=159 Identities=23% Similarity=0.366 Sum_probs=112.6
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|.||||.||..|+.+++++|++.|++++ .+|..|.||||+|+..|+.+++++|+++|+++. ..+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~ 67 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVIN-------------HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGK 67 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcC-------------CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCC
Confidence 37888888888888888888888877666 377888888888888888888888888887774 5677
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD 160 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d 160 (534)
.|.||||+|+..|+.+++++|++++++ ++..|
T Consensus 68 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------------~~~~~ 99 (167)
T 3v31_A 68 GRESALSLACSKGYTDIVKMLLDCGVD------------------------------------------------VNEYD 99 (167)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHHTCC------------------------------------------------TTCCC
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHCCCC------------------------------------------------CCcCC
Confidence 888888888888888888888877654 22334
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCC
Q 039300 161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222 (534)
Q Consensus 161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 222 (534)
..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+..|+.+++++|++++.+
T Consensus 100 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~ 160 (167)
T 3v31_A 100 WNGGTPLLYAVHGNHVKCVKMLLESGADPT-IETDSGYNSMDLAVALGYRSVQQVIESHLLK 160 (167)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445566666666666666666666665543 4455566666666666666666666555443
No 61
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=4e-28 Score=218.94 Aligned_cols=164 Identities=25% Similarity=0.275 Sum_probs=98.8
Q ss_pred hhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCc
Q 039300 39 TLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDEL 118 (534)
Q Consensus 39 ~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~ 118 (534)
.+++.+|..|.||||+|+..|+.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++++++
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------- 93 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSN----------- 93 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----------
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCC-----------
Confidence 3455677777777777777777777777777776654 4566677777777777777777777766543
Q ss_pred hHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCC
Q 039300 119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGA 198 (534)
Q Consensus 119 t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 198 (534)
++..|..|.||||+|+..|+.+++++|++.|+++. .+|..|.
T Consensus 94 -------------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~ 135 (192)
T 2rfm_A 94 -------------------------------------VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGE 135 (192)
T ss_dssp -------------------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCC
T ss_pred -------------------------------------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCC
Confidence 12233345555555555555555555555555433 4455555
Q ss_pred cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhC
Q 039300 199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 253 (534)
Q Consensus 199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~ 253 (534)
||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++.
T Consensus 136 t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 189 (192)
T 2rfm_A 136 TPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASARIFGRQEVIKIFTEV 189 (192)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHhCcHHHHHHHHhc
Confidence 555555555555555555555555 455555555555555555555555555543
No 62
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=3.4e-30 Score=255.22 Aligned_cols=233 Identities=12% Similarity=0.099 Sum_probs=165.9
Q ss_pred CCCCcHhHHHHHhCcHHHHHHHHHcCCCCC--cCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCC--cccCCCCCCchHH
Q 039300 46 IEGNTPLHNVVTKKHKRVIRILVEKDSAPS--SYINKAYQTPLSIAIDVRLNDIACFIIDKSSES--LNATRLPDELTLL 121 (534)
Q Consensus 46 ~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~--~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~~g~t~L 121 (534)
.+++||||+|++.|+.++|++|+++|+... ...+..|.||||+|+..|+.+++++|+++|++. .+.... + .|||
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-~-~TpL 167 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-N-YHAF 167 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-H-HHHH
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-C-CCHH
Confidence 345699999999999999999999987321 123556789999999999999999999999741 112221 2 8999
Q ss_pred HHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc--ccCCCCcHHHHHH-hCCCHHHHHHHHhhchhhhcccCCCCC
Q 039300 122 HFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR--LDWHQRNPLHYAA-ASGNVQMVQRLLEASKQLAYKRDCNGA 198 (534)
Q Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~--~d~~g~tpL~~A~-~~g~~~~v~~Ll~~~~~~~~~~~~~g~ 198 (534)
|.|+.+|+.++ ++.|++.. .+++. .|..|.||||+|+ ..|+.+++++|++.|+. |.
T Consensus 168 h~Aa~~G~~ei---------v~~Ll~~g----a~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~--------~~ 226 (376)
T 2aja_A 168 RLAAENGHLHV---------LNRLCELA----PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM--------LA 226 (376)
T ss_dssp HHHHHTTCHHH---------HHHHHHSC----GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH--------HH
T ss_pred HHHHHCCCHHH---------HHHHHHcC----CccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc--------cc
Confidence 99999999998 88888763 45555 7778899999999 99999999999997752 77
Q ss_pred cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCH---------------------------HHHHHHH
Q 039300 199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNW---------------------------NIVSFIL 251 (534)
Q Consensus 199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~---------------------------~~~~~Ll 251 (534)
||||.|+.+|+.+++++|++++++ ++..| ++++.|+.+|+. +.+++|+
T Consensus 227 taL~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll 301 (376)
T 2aja_A 227 YAEIHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL 301 (376)
T ss_dssp HHHHCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHH
T ss_pred hHHHHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHH
Confidence 999999999999999999998876 44333 234444444433 4455555
Q ss_pred hCCcccccc--cccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300 252 KSPEMENLI--NLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM 312 (534)
Q Consensus 252 ~~~~~~~~~--~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~ 312 (534)
+.+....+. ...++.++||||+|+..|+.+++++|++.+ ..++. .++|+++++..
T Consensus 302 ~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~--~~~~~~~~~~~ 358 (376)
T 2aja_A 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP----SVLAL--TKANNYYINET 358 (376)
T ss_dssp TSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHS--CC---------
T ss_pred hChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHH--HHHhccccccc
Confidence 543322111 233467889999999999999999999874 45666 89999999876
No 63
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=4.1e-28 Score=214.76 Aligned_cols=145 Identities=26% Similarity=0.350 Sum_probs=136.8
Q ss_pred CCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcC
Q 039300 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHG 242 (534)
Q Consensus 163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 242 (534)
+.||||.|+..|+.++++.|++.+....+..|..|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~ 80 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD-PHILAKERESALSLASTGG 80 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-chhhcccCCCHHHHHHHCC
Confidence 468999999999999999999999986778899999999999999999999999999998 8999999999999999999
Q ss_pred CHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhh
Q 039300 243 NWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTR 314 (534)
Q Consensus 243 ~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~ 314 (534)
+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|+++ |++++.+|. .|.||+++|....
T Consensus 81 ~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~~~ 146 (172)
T 3v30_A 81 YTDIVGLLLERDVD---INIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEAD--SGYTPMDLAVALG 146 (172)
T ss_dssp CHHHHHHHHTTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCHHHHHHHHT
T ss_pred CHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCC--CCCCHHHHHHHhC
Confidence 99999999999877 899999999999999999999999999998 799999999 9999999998753
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=6.1e-28 Score=217.74 Aligned_cols=166 Identities=23% Similarity=0.263 Sum_probs=154.9
Q ss_pred hhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCc
Q 039300 154 DLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRS 233 (534)
Q Consensus 154 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 233 (534)
..++.+|..|+||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++.+++ ++..|..|+|
T Consensus 26 ~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 103 (192)
T 2rfm_A 26 FLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSN-VNTKDFSGKT 103 (192)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTSCC
T ss_pred HHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCc
Confidence 4578899999999999999999999999999998765 6788999999999999999999999999998 8999999999
Q ss_pred HHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhh
Q 039300 234 ILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMT 313 (534)
Q Consensus 234 ~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~ 313 (534)
|||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|. .|.||+++|..
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~- 176 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDL--TGLTAEASARI- 176 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCT--TSCBHHHHHHH-
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCC--CCCCHHHHHHH-
Confidence 99999999999999999999887 899999999999999999999999999998 899999999 99999999998
Q ss_pred hhchHHHHHHhHHHHHHHHhh
Q 039300 314 RADVTEVQKHLTLKALKTAYA 334 (534)
Q Consensus 314 ~~~~~~~~~~~~~~~L~~~ga 334 (534)
....+++++|++.|.
T Consensus 177 ------~~~~~~v~~Ll~~~~ 191 (192)
T 2rfm_A 177 ------FGRQEVIKIFTEVRR 191 (192)
T ss_dssp ------TTCHHHHHHHHHHHH
T ss_pred ------hCcHHHHHHHHhccC
Confidence 456788888888763
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=1.8e-27 Score=209.95 Aligned_cols=158 Identities=23% Similarity=0.369 Sum_probs=96.6
Q ss_pred CCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHH
Q 039300 45 DIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFF 124 (534)
Q Consensus 45 d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A 124 (534)
...+.||||.|++.|+.++|++|+++|++++ ..|..|.||||+|+..|+.+++++|++++++
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------------- 72 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVN-AEDASGWTPLHLAAFNGHLEIVEVLLKNGAD----------------- 72 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-----------------
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----------------
Confidence 3445566666666666666666666666553 4566666666666666666666666665543
Q ss_pred HHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHH
Q 039300 125 VMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLA 204 (534)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A 204 (534)
++..|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|
T Consensus 73 -------------------------------~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A 120 (169)
T 2y1l_E 73 -------------------------------VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLA 120 (169)
T ss_dssp -------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHH
T ss_pred -------------------------------CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHH
Confidence 12223345566666666666666666666665543 4555666666666
Q ss_pred HHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhC
Q 039300 205 AENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 253 (534)
Q Consensus 205 ~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~ 253 (534)
+..|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|++.
T Consensus 121 ~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 121 AMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp HHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 666666666666666665 566666666666666666666666666654
No 66
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=1.8e-27 Score=208.28 Aligned_cols=158 Identities=21% Similarity=0.260 Sum_probs=120.6
Q ss_pred CCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHH
Q 039300 47 EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVM 126 (534)
Q Consensus 47 ~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~ 126 (534)
...||||.|+..|+.+++++|+++|+++. ..|..|.||||+|+. |+.+++++|++++++
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~------------------- 62 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGAN------------------- 62 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC-------------------
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCC-------------------
Confidence 34578888888888888888888887764 567778888888877 888888888876654
Q ss_pred hcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHH
Q 039300 127 RQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAE 206 (534)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 206 (534)
++..|..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+.
T Consensus 63 -----------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~ 112 (162)
T 1ihb_A 63 -----------------------------PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAK 112 (162)
T ss_dssp -----------------------------TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHH
T ss_pred -----------------------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHH
Confidence 23345567788888888888888888888887654 567788888888888
Q ss_pred cCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCc
Q 039300 207 NGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPE 255 (534)
Q Consensus 207 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~ 255 (534)
.|+.+++++|++++++.++.+|..|+||||+|+.+|+.+++++|+++|+
T Consensus 113 ~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GA 161 (162)
T 1ihb_A 113 EGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161 (162)
T ss_dssp TTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Confidence 8888888888888877667777888888888888888888888887765
No 67
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=3.2e-30 Score=255.40 Aligned_cols=244 Identities=11% Similarity=0.113 Sum_probs=165.2
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCC--cCCc
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPS--SYIN 79 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~--~~~~ 79 (534)
++||||+||+.|+.++|++|+++|+.... ....|..|.||||+|+.+|+.++|++|+++|++.. +..+
T Consensus 92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~----------~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~ 161 (376)
T 2aja_A 92 SEVICFVAAITGCSSALDTLCLLLTSDEI----------VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQA 161 (376)
T ss_dssp HHHHHHHHHHHCCHHHHHHHTTC--CCSS----------CC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSH
T ss_pred cCCHHHHHHHcCCHHHHHHHHHcCCcHHH----------HHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCC
Confidence 46999999999999999999999873211 11245567899999999999999999999997631 1223
Q ss_pred cCCCcHHHHHHHcCcHHHHHHHHhcCCCCccc--CCCCCCchHHHHHH-HhcCcchhhhhhhHHHHHHHHHHhCCChhhh
Q 039300 80 KAYQTPLSIAIDVRLNDIACFIIDKSSESLNA--TRLPDELTLLHFFV-MRQNYDLSKSMQFLQFIDIMVKILGTNKDLI 156 (534)
Q Consensus 80 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~--~~~~~g~t~L~~A~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 156 (534)
.+ .||||+|+..|+.+++++|+++|++. +. .+. .|.||||.|+ .+|+.++ ++.|++. +.
T Consensus 162 ~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~-~g~TpL~~Aa~~~G~~ei---------v~~Ll~~----ga-- 223 (376)
T 2aja_A 162 EN-YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQA-ENYYAFRWAAVGRGHHNV---------INFLLDC----PV-- 223 (376)
T ss_dssp HH-HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHH-HHHHHHHHHHSTTCCHHH---------HHHHTTS----HH--
T ss_pred CC-CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCC-CCCCHHHHHHHHCCCHHH---------HHHHHhC----CC--
Confidence 33 89999999999999999999999873 32 444 7899999999 9999999 7666652 22
Q ss_pred hcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCc---------------------------
Q 039300 157 NRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGE--------------------------- 209 (534)
Q Consensus 157 ~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~--------------------------- 209 (534)
.|.||||+|+..|+.+++++|++.|++... .+ ++++.|+.+|+
T Consensus 224 -----~~~taL~~Aa~~g~~evv~lL~~~ga~~~~-~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~ 293 (376)
T 2aja_A 224 -----MLAYAEIHEFEYGEKYVNPFIARHVNRLKE-MH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL 293 (376)
T ss_dssp -----HHHHHHHCTTTTTTTTHHHHHHHHHHHHHH-HH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGG
T ss_pred -----ccchHHHHHHHCCCHHHHHHHHhcCccccc-cc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhH
Confidence 278999999999999999999999987642 22 23344444433
Q ss_pred HHHHHHHHHhCCCc----cccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHH
Q 039300 210 LKVLKLLINKYPDA----IEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFT 285 (534)
Q Consensus 210 ~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~ 285 (534)
.+.+++|++..... ....+..+.||||+|+..|+.+++++|++.+ ..+|..|+|++.+|-..|+.++++.
T Consensus 294 ~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~------~v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 294 LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP------SVLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp HHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH------HHHHSCC------------------
T ss_pred HHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh------HHHHHHHHhccccccccccccHHHH
Confidence 44455555432110 1122345678999999999999999999874 5567899999999999999988876
Q ss_pred hhhC
Q 039300 286 LSRH 289 (534)
Q Consensus 286 Ll~~ 289 (534)
-+.+
T Consensus 368 ~~~~ 371 (376)
T 2aja_A 368 ALEH 371 (376)
T ss_dssp ----
T ss_pred HHHH
Confidence 5543
No 68
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=2.5e-27 Score=208.53 Aligned_cols=162 Identities=22% Similarity=0.291 Sum_probs=151.2
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 039300 162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241 (534)
Q Consensus 162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 241 (534)
.|.||||.|+..|+.+++++|++.+.++. ..|..|.||||+|+..|+.+++++|++.+++ ++..|..|+||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD-PQLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence 58899999999999999999999998754 7788999999999999999999999999988 889999999999999999
Q ss_pred CCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHH
Q 039300 242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQ 321 (534)
Q Consensus 242 ~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~ 321 (534)
|+.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|+++ |++++.+|. .|.||+++|.. ..
T Consensus 80 ~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~--~g~t~l~~A~~-------~~ 146 (167)
T 3v31_A 80 GYTDIVKMLLDCGVD---VNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETD--SGYNSMDLAVA-------LG 146 (167)
T ss_dssp TCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCHHHHHHH-------HT
T ss_pred CCHHHHHHHHHCCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCC--CCCCHHHHHHH-------cC
Confidence 999999999999877 899999999999999999999999999997 899999999 99999999998 55
Q ss_pred HHhHHHHHHHHhhhccC
Q 039300 322 KHLTLKALKTAYAKRAL 338 (534)
Q Consensus 322 ~~~~~~~L~~~ga~~~~ 338 (534)
..+++++|.+++++...
T Consensus 147 ~~~~~~~L~~~~~~~~~ 163 (167)
T 3v31_A 147 YRSVQQVIESHLLKLLQ 163 (167)
T ss_dssp CHHHHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 77889999999877544
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=4.2e-27 Score=203.90 Aligned_cols=151 Identities=21% Similarity=0.284 Sum_probs=94.4
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA 81 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~ 81 (534)
+.||||.|++.|+.+++++|++.|++++ .|..|.||||+|+..|+.+++++|++.|+++. ..+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~ 66 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT--------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKV 66 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC--------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTT
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC--------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCC
Confidence 3467777777777777777777766543 45667777777777777777777777776653 45666
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300 82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161 (534)
Q Consensus 82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 161 (534)
|.||||+|+..|+.+++++|++++++ ++..|.
T Consensus 67 g~t~L~~A~~~~~~~~v~~Ll~~g~~------------------------------------------------~~~~~~ 98 (153)
T 1awc_B 67 DRTPLHMAASEGHANIVEVLLKHGAD------------------------------------------------VNAKDM 98 (153)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHTTTCC------------------------------------------------TTCCCT
T ss_pred CCCHHHHHHHcChHHHHHHHHHcCCC------------------------------------------------CCCCCC
Confidence 67777777777777777777665543 223334
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHH
Q 039300 162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLL 216 (534)
Q Consensus 162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 216 (534)
.|.||||+|+..|+.+++++|+++|+++. .+|..|.||||+|+..|+.+++++|
T Consensus 99 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 99 LKMTALHWATEHNHQEVVELLIKYGADVH-TQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 45566666666666666666666655543 4455555666666655555555544
No 70
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=9.7e-27 Score=205.23 Aligned_cols=159 Identities=26% Similarity=0.381 Sum_probs=144.9
Q ss_pred CccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhh
Q 039300 78 INKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLIN 157 (534)
Q Consensus 78 ~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 157 (534)
....+.+||+.|+..|+.+++++|++++++ ++
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~------------------------------------------------~~ 41 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGAD------------------------------------------------VN 41 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCC------------------------------------------------TT
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCC------------------------------------------------CC
Confidence 455678999999999999999999998765 23
Q ss_pred cccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300 158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237 (534)
Q Consensus 158 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 237 (534)
..|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||.|+..|+.+++++|++++++ ++..|..|+||||+
T Consensus 42 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~ 119 (169)
T 2y1l_E 42 AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGHLEIVEVLLKNGAD-VNANDMEGHTPLHL 119 (169)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHH
Confidence 445678999999999999999999999999865 6788999999999999999999999999998 89999999999999
Q ss_pred HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300 238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289 (534)
Q Consensus 238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 289 (534)
|+..|+.+++++|++++++ ++.+|..|.||||+|+..++.+++++|++.
T Consensus 120 A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 120 AAMFGHLEIVEVLLKNGAD---VNAQDKFGKTAFDISIDNGNEDLAEILQKL 168 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 9999999999999999887 899999999999999999999999999986
No 71
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=8e-27 Score=207.86 Aligned_cols=164 Identities=22% Similarity=0.284 Sum_probs=151.2
Q ss_pred CCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHh
Q 039300 161 WHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAK 240 (534)
Q Consensus 161 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 240 (534)
.++.++||.|+..|+.++++.|++.+....+..|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+.
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~ 81 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAAS 81 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 45789999999999999999999997666668899999999999999999999999999998 89999999999999999
Q ss_pred cCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHH
Q 039300 241 HGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEV 320 (534)
Q Consensus 241 ~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~ 320 (534)
.|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++ |++++.+|. .|.||+++|.. .
T Consensus 82 ~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~A~~-------~ 148 (179)
T 3f6q_A 82 HGHRDIVQKLLQYKAD---INAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNK--YGEMPVDKAKA-------P 148 (179)
T ss_dssp TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCT--TSCCGGGGSCH-------H
T ss_pred cCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhcc--CCCCcHHHHHH-------H
Confidence 9999999999999887 899999999999999999999999999998 899999999 99999999987 6
Q ss_pred HHHhHHHHHHHHhhhccC
Q 039300 321 QKHLTLKALKTAYAKRAL 338 (534)
Q Consensus 321 ~~~~~~~~L~~~ga~~~~ 338 (534)
.+..+.+.|++.|++...
T Consensus 149 ~~~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 149 LRELLRERAEKMGQNLNR 166 (179)
T ss_dssp HHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHHHHhhcCccc
Confidence 678899999999998765
No 72
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=5.4e-29 Score=232.87 Aligned_cols=209 Identities=16% Similarity=0.136 Sum_probs=96.4
Q ss_pred CCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHH
Q 039300 47 EGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVM 126 (534)
Q Consensus 47 ~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~ 126 (534)
.|.||||.|++.++.++++.|+++|+++. .+..|.||||.|+..|+.+++++|++.+++
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~------------------- 62 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAHGMRVK--FNPLPLALLLDSSLEGEFDLVQRIIYEVDD------------------- 62 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS-------------------
T ss_pred cccccCchhhhhhhHHHHHHHhccCCCcc--cCchhhHHHHHHHHcCCHHHHHHHHHcCCC-------------------
Confidence 35555555555555555555555555543 134455555555555555555555554432
Q ss_pred hcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHH
Q 039300 127 RQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAE 206 (534)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 206 (534)
++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.||||+|+.
T Consensus 63 -----------------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~ 112 (239)
T 1ycs_B 63 -----------------------------PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAAS 112 (239)
T ss_dssp -----------------------------CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHH
T ss_pred -----------------------------CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHH
Confidence 12223344555555555555555555555555433 445555555555555
Q ss_pred cCcHHHHHHHHHhCCCccccccCCCC-cHHHHH--HhcCCHHHHHHHHhCCccccc------ccccCCCCCcHHHHHHhc
Q 039300 207 NGELKVLKLLINKYPDAIEIRDNSDR-SILHVA--AKHGNWNIVSFILKSPEMENL------INLIDRNGNTSLHLAAMG 277 (534)
Q Consensus 207 ~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~~~~Ll~~~~~~~~------~~~~d~~g~t~Lh~A~~~ 277 (534)
.|+.+++++|++++++ ++..|..|. ||||+| +..|+.+++++|++.+++... ....|..+.++++++...
T Consensus 113 ~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~ 191 (239)
T 1ycs_B 113 CNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKE 191 (239)
T ss_dssp TTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCS
T ss_pred cCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccC
Confidence 5555555555555555 445554444 666655 455556666666655443211 222367788888888877
Q ss_pred CChhHHHHhhhCcccc------hhhccccCCCCChHHHhHh
Q 039300 278 LHSDVVFTLSRHKSVN------IRAKNRSARNNTTLEIDEM 312 (534)
Q Consensus 278 ~~~~~v~~Ll~~~~~~------~~~~n~~~~g~t~l~~a~~ 312 (534)
|. +++.|.+. +.+ ....+. .|.+|..+...
T Consensus 192 G~--~i~vl~~~-~~~~~~Ww~~~~~~~--~G~~P~~yv~~ 227 (239)
T 1ycs_B 192 GD--CMTIIHRE-DEDEIEWWWARLNDK--EGYVPRNLLGL 227 (239)
T ss_dssp SC--EEEECCCC-TTSCSSEEEEEETTE--EEEEEGGGEEC
T ss_pred CC--EEEEEEec-CCCCCCEEEEEECCc--EEEeehHHeeE
Confidence 75 34444433 222 234556 78889888765
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=2.5e-26 Score=199.06 Aligned_cols=150 Identities=20% Similarity=0.304 Sum_probs=99.9
Q ss_pred CcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhc
Q 039300 49 NTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQ 128 (534)
Q Consensus 49 ~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~ 128 (534)
.||||.|+..|+.+++++|++.|++.. .+..|.||||+|+..|+.+++++|++++++
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~--------------------- 59 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS--------------------- 59 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---------------------
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---------------------
Confidence 467777777777777777777776553 466677777777777777777777765543
Q ss_pred CcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcC
Q 039300 129 NYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENG 208 (534)
Q Consensus 129 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 208 (534)
++..|..|.||||+|+..|+.+++++|+++|+++. .+|..|.||||+|+..|
T Consensus 60 ---------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~ 111 (153)
T 1awc_B 60 ---------------------------RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHN 111 (153)
T ss_dssp ---------------------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred ---------------------------CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcC
Confidence 22334456677777777777777777777766644 45666666666666666
Q ss_pred cHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHH
Q 039300 209 ELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFI 250 (534)
Q Consensus 209 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~L 250 (534)
+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|
T Consensus 112 ~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 112 HQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 66666666666666 566666666666666666666666654
No 74
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=7e-27 Score=205.27 Aligned_cols=160 Identities=19% Similarity=0.283 Sum_probs=91.9
Q ss_pred cCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHH
Q 039300 44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123 (534)
Q Consensus 44 ~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~ 123 (534)
.|.+|.||||.|++.|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++++++
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---------------- 67 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD---------------- 67 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----------------
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC----------------
Confidence 4556666777777777777777776654444344555566666666666666666666665543
Q ss_pred HHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHH
Q 039300 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHL 203 (534)
Q Consensus 124 A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~ 203 (534)
++..|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+
T Consensus 68 --------------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~ 114 (165)
T 3twr_A 68 --------------------------------VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHE 114 (165)
T ss_dssp --------------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHH
T ss_pred --------------------------------CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHH
Confidence 22233445566666666666666666666655543 445555556655
Q ss_pred HHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCC
Q 039300 204 AAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSP 254 (534)
Q Consensus 204 A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~ 254 (534)
|+..|+.+++++|++++++ ++.+|..|+||||+|+. ++.+++++|++.|
T Consensus 115 A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g 163 (165)
T 3twr_A 115 AAAKGKYEICKLLLQHGAD-PTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA 163 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred HHHcCCHHHHHHHHHcCCC-CcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence 5555555555555555555 55555555555555444 5555555555544
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=3.9e-27 Score=206.87 Aligned_cols=161 Identities=24% Similarity=0.292 Sum_probs=145.4
Q ss_pred ccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 039300 159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA 238 (534)
Q Consensus 159 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 238 (534)
.|.+|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A 82 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNA 82 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC-CCccCCCCCCHHHHH
Confidence 3566889999999999999999999977655667788899999999999999999999999998 899999999999999
Q ss_pred HhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchH
Q 039300 239 AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVT 318 (534)
Q Consensus 239 ~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~ 318 (534)
+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++ |++++.+|. .|.||+++|..
T Consensus 83 ~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~a~~------ 150 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAV---VNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNR--DGNTPLDLVKD------ 150 (165)
T ss_dssp HHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCTGGGSCT------
T ss_pred HHcCcHHHHHHHHhCCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCC--CCCChhHhHhc------
Confidence 999999999999999887 899999999999999999999999999998 899999999 99999999876
Q ss_pred HHHHHhHHHHHHHHhh
Q 039300 319 EVQKHLTLKALKTAYA 334 (534)
Q Consensus 319 ~~~~~~~~~~L~~~ga 334 (534)
.+.+++++|++.|+
T Consensus 151 --~~~~i~~~L~~~gA 164 (165)
T 3twr_A 151 --GDTDIQDLLRGDAA 164 (165)
T ss_dssp --TCHHHHHHHHTC--
T ss_pred --CChHHHHHHhhccc
Confidence 23478888888775
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=1.3e-26 Score=206.45 Aligned_cols=167 Identities=19% Similarity=0.248 Sum_probs=152.8
Q ss_pred CCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccC
Q 039300 115 PDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRD 194 (534)
Q Consensus 115 ~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 194 (534)
+++.++|+.|+..|+.++ ++.+++... .+++..|..|.||||+|+..|+.+++++|++.|+++. ..|
T Consensus 3 ~~~~~~l~~A~~~g~~~~---------v~~ll~~~~---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~ 69 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVA---------VRLWLDNTE---NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMN 69 (179)
T ss_dssp ----CCHHHHHHHTCHHH---------HHHHHHCTT---SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred HHHHHHHHHHHHcCCHHH---------HHHHHhcCc---ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcC
Confidence 377899999999999999 888888654 6788999999999999999999999999999999865 678
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHH
Q 039300 195 CNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA 274 (534)
Q Consensus 195 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A 274 (534)
..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|.||||+|
T Consensus 70 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A 145 (179)
T 3f6q_A 70 RGDDTPLHLAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL---VSICNKYGEMPVDKA 145 (179)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SSBCCTTSCCGGGGS
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cchhccCCCCcHHHH
Confidence 8999999999999999999999999998 899999999999999999999999999999887 899999999999999
Q ss_pred HhcCChhHHHHhhhCcccchhhccc
Q 039300 275 AMGLHSDVVFTLSRHKSVNIRAKNR 299 (534)
Q Consensus 275 ~~~~~~~~v~~Ll~~~~~~~~~~n~ 299 (534)
+..++.+++++|++. |++++..+.
T Consensus 146 ~~~~~~~~~~~L~~~-g~~~~~~~~ 169 (179)
T 3f6q_A 146 KAPLRELLRERAEKM-GQNLNRIPY 169 (179)
T ss_dssp CHHHHHHHHHHHHHT-TCCCSCBCC
T ss_pred HHHHHHHHHHHHHHh-hcCcccCCc
Confidence 999999999999998 788887665
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=4.8e-28 Score=226.39 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=130.4
Q ss_pred ccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc
Q 039300 79 NKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR 158 (534)
Q Consensus 79 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 158 (534)
+..|.||||.|+..++.++++.|+++|++. +
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~-~------------------------------------------------ 32 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRV-K------------------------------------------------ 32 (239)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCc-c------------------------------------------------
Confidence 456899999999999999999999998761 1
Q ss_pred ccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHH
Q 039300 159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVA 238 (534)
Q Consensus 159 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 238 (534)
.+..|.||||.|+..|+.++++.|++.|++++ ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|
T Consensus 33 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A 110 (239)
T 1ycs_B 33 FNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDGWTPLHCA 110 (239)
T ss_dssp ----CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHH
T ss_pred cCchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHH
Confidence 01246799999999999999999999999755 7799999999999999999999999999999 899999999999999
Q ss_pred HhcCCHHHHHHHHhCCcccccccccCCCCC-cHHHHH--HhcCChhHHHHhhhCcccchhhccc-------cCCCCChHH
Q 039300 239 AKHGNWNIVSFILKSPEMENLINLIDRNGN-TSLHLA--AMGLHSDVVFTLSRHKSVNIRAKNR-------SARNNTTLE 308 (534)
Q Consensus 239 ~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~-t~Lh~A--~~~~~~~~v~~Ll~~~~~~~~~~n~-------~~~g~t~l~ 308 (534)
+.+|+.+++++|+++|++ ++.+|..|. ||||+| +..|+.+++++|+++ |++++..|. +..+.++.+
T Consensus 111 ~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~e 186 (239)
T 1ycs_B 111 ASCNNVQVCKFLVESGAA---VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV-QEKMGIMNKGVIYALWDYEPQNDDE 186 (239)
T ss_dssp HHTTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH-HHHTTTTGGGEEEESSCBCCSSTTB
T ss_pred HHcCCHHHHHHHHHcCCC---cceecCCCCcchHHHHHHhhhccHHHHHHHHHh-hhcccccccceEEEEeccCCCCCCc
Confidence 999999999999999887 889988777 999999 888999999999998 788777633 127899998
Q ss_pred HhHh
Q 039300 309 IDEM 312 (534)
Q Consensus 309 ~a~~ 312 (534)
++..
T Consensus 187 La~~ 190 (239)
T 1ycs_B 187 LPMK 190 (239)
T ss_dssp CCBC
T ss_pred cccc
Confidence 8765
No 78
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=4.6e-26 Score=198.02 Aligned_cols=154 Identities=23% Similarity=0.280 Sum_probs=142.2
Q ss_pred CchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCC
Q 039300 117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCN 196 (534)
Q Consensus 117 g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~ 196 (534)
+.|+||.|+..|+.+. ++.+++... ..++..|..|.||||+ +..|+.+++++|++.|+++. .+|..
T Consensus 2 ~~~~L~~A~~~g~~~~---------v~~ll~~~~---~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~ 67 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQE---------VRRLLHREL---VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTS 67 (156)
T ss_dssp HHHHHHHHHHHTCHHH---------HHHHHHTTC---CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred cchHHHHHHHhCCHHH---------HHHHHHhhC---cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCC
Confidence 4689999999999999 888888732 5688899999999999 99999999999999999865 67889
Q ss_pred CCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHh
Q 039300 197 GATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276 (534)
Q Consensus 197 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~ 276 (534)
|.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++. ++ ++.+|.+|+||||+|+.
T Consensus 68 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~---~~~~~~~g~t~l~~A~~ 142 (156)
T 1bd8_A 68 GTSPVHDAARTGFLDTLKVLVEHGAD-VNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD---LHRRDARGLTPLELALQ 142 (156)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC---TTCCCTTSCCHHHHHHH
T ss_pred CCCHHHHHHHcCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC---CCCcCCCCCCHHHHHHH
Confidence 99999999999999999999999988 899999999999999999999999999998 55 89999999999999999
Q ss_pred cCChhHHHHhhhC
Q 039300 277 GLHSDVVFTLSRH 289 (534)
Q Consensus 277 ~~~~~~v~~Ll~~ 289 (534)
.|+.+++++|+++
T Consensus 143 ~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 143 RGAQDLVDILQGH 155 (156)
T ss_dssp SCCHHHHHHHHTT
T ss_pred cCcHHHHHHHHhh
Confidence 9999999999875
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=7.9e-26 Score=196.52 Aligned_cols=154 Identities=22% Similarity=0.345 Sum_probs=129.9
Q ss_pred CCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHh
Q 039300 48 GNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMR 127 (534)
Q Consensus 48 g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~ 127 (534)
|.||||.|+..|+.++++.|++.+....+..+..|.||||+ +..|+.+++++|+++|++
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~-------------------- 60 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS-------------------- 60 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC--------------------
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC--------------------
Confidence 46889999999999999999988333335678888899999 888889999888887665
Q ss_pred cCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHc
Q 039300 128 QNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAEN 207 (534)
Q Consensus 128 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 207 (534)
++..|..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+..
T Consensus 61 ----------------------------~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 111 (156)
T 1bd8_A 61 ----------------------------PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQE 111 (156)
T ss_dssp ----------------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHH
T ss_pred ----------------------------CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHh
Confidence 33455678899999999999999999999998755 6788899999999999
Q ss_pred CcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhC
Q 039300 208 GELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS 253 (534)
Q Consensus 208 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~ 253 (534)
|+.+++++|++. ++ ++.+|..|+||||+|+..|+.+++++|+++
T Consensus 112 ~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 112 GHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred ChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999988 66 888999999999999999999999999874
No 80
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=8.9e-28 Score=222.60 Aligned_cols=190 Identities=14% Similarity=0.137 Sum_probs=148.5
Q ss_pred HHHHHcCCCCCc--CCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHH
Q 039300 65 RILVEKDSAPSS--YINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFI 142 (534)
Q Consensus 65 ~~Ll~~g~~~~~--~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~ 142 (534)
+.|+++|+++.. ..+..+.||||.|+..|+.+++++|++.+++
T Consensus 2 ~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~----------------------------------- 46 (229)
T 2vge_A 2 RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND----------------------------------- 46 (229)
T ss_dssp --------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC-----------------------------------
T ss_pred eehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC-----------------------------------
Confidence 456666655432 2234455666666666666666666665543
Q ss_pred HHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCC
Q 039300 143 DIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPD 222 (534)
Q Consensus 143 ~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ 222 (534)
++..|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++.+++
T Consensus 47 -------------~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 112 (229)
T 2vge_A 47 -------------PSQPNEEGITALHNAICGANYSIVDFLITAGANVN-SPDSHGWTPLHCAASCNDTVICMALVQHGAA 112 (229)
T ss_dssp -------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred -------------CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 45567789999999999999999999999999865 7788999999999999999999999999999
Q ss_pred cccccc-CCCCcHHHHH--HhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccc--hhhc
Q 039300 223 AIEIRD-NSDRSILHVA--AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN--IRAK 297 (534)
Q Consensus 223 ~~~~~d-~~g~t~Lh~A--~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~--~~~~ 297 (534)
++..+ ..|+||||+| +..|+.+++++|++.|++ ++.+|..|.||+|.++..... ++|++. |++ ++.+
T Consensus 113 -~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~---~~~~~~~~~~~l~~~~~~~~~---~~ll~~-ga~~~~~~~ 184 (229)
T 2vge_A 113 -IFATTLSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSAEFGD---ELSFRE-GESVTVLRR 184 (229)
T ss_dssp -TTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH---TTTSGGGEEEESSCBCCSSTT---BCCBCT-TCEEEEEES
T ss_pred -cccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCC---cccccCCchHHHHHHhhcccc---ccCccc-ccccccccc
Confidence 77775 6999999999 999999999999999887 899999999999976555433 566666 677 6677
Q ss_pred cccCCCCChHHHhHhh
Q 039300 298 NRSARNNTTLEIDEMT 313 (534)
Q Consensus 298 n~~~~g~t~l~~a~~~ 313 (534)
|. .|.|||++|+..
T Consensus 185 d~--~G~TpL~~A~~~ 198 (229)
T 2vge_A 185 DG--PEETDWWWAALH 198 (229)
T ss_dssp SC--TTCSSEEEEEET
T ss_pred CC--CcccHHHHHHHc
Confidence 77 999999999873
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=3.4e-25 Score=192.51 Aligned_cols=147 Identities=22% Similarity=0.216 Sum_probs=118.2
Q ss_pred hhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCc-H
Q 039300 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRS-I 234 (534)
Q Consensus 156 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~ 234 (534)
.+..+..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+ .|+.+++++|++++++ ++.+|..|+| |
T Consensus 5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~-~~~~d~~g~ttp 81 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAE-PNCADPATLTRP 81 (156)
T ss_dssp -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC-CCCCCTTTCCCH
T ss_pred ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC-CCCcCCCCCcHH
Confidence 45567789999999999999999999999999865 67889999999985 9999999999999988 8999999999 9
Q ss_pred HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhH
Q 039300 235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDE 311 (534)
Q Consensus 235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~ 311 (534)
||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++ |++++.+|. .|.||.+-+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~~~~~~ 152 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGAR---LDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNH--ARIDAAEGPS 152 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCC---SSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C--------------------
T ss_pred HHHHHHCCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCc--CcCcccccCC
Confidence 9999999999999999999887 899999999999999999999999999998 899999999 9999987544
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=8.3e-25 Score=185.33 Aligned_cols=133 Identities=23% Similarity=0.257 Sum_probs=125.1
Q ss_pred hhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCC-CC
Q 039300 154 DLINRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNS-DR 232 (534)
Q Consensus 154 ~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-g~ 232 (534)
..++..|..|.||||+|+..|+.+++++|++.|+++. .+|..|.||||+|+. |+.+++++|++++++ ++.+|.. |+
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~-~~~~~~~~g~ 79 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAE-PNCADPATLT 79 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC-SSCCBTTTTB
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC-CCCcCCCCCC
Confidence 4678889999999999999999999999999998865 678999999999999 999999999999999 8999999 99
Q ss_pred cHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccc
Q 039300 233 SILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN 293 (534)
Q Consensus 233 t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~ 293 (534)
||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..++.+++++|+++ |+|
T Consensus 80 t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-Gad 136 (136)
T 1d9s_A 80 RPVHDAAREGFLDTLVVLHRAGAR---LDVCDAWGRLPVDLAEEQGHRDIARYLHAA-TGD 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTCCC---CCCCSSSSSCHHHHHHHHTCHHHHHHHHHH-HCC
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHc-CCC
Confidence 999999999999999999999887 899999999999999999999999999987 553
No 83
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=1.4e-24 Score=193.93 Aligned_cols=161 Identities=14% Similarity=0.082 Sum_probs=120.9
Q ss_pred CchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhccc-CCCCcHHHHHHhCCCH----HHHHHHHhhchhhhc
Q 039300 117 ELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLD-WHQRNPLHYAAASGNV----QMVQRLLEASKQLAY 191 (534)
Q Consensus 117 g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d-~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~ 191 (534)
+.++|+.|+..|+.+. +..++... ++..+ ..|+||||+|+..|+. +++++|+++|++++
T Consensus 6 ~~~~l~~Aa~~g~~~~---------~~~l~~~~------~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn- 69 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYED---------FLELFEKG------YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK- 69 (186)
T ss_dssp HCSSHHHHHHHSCHHH---------HHHHHHHS------SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-
T ss_pred cccHHHHHHHcCCHHH---------HHHHHhcC------cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-
Confidence 3467888888888776 55555542 33334 5688888888888864 47888888888765
Q ss_pred ccCCCCCcHHHHHHHcCc------HHHHHHHHHhCCCccccccCCCC-cHHHHHHhcCC-----HHHHHHHHh-CCcccc
Q 039300 192 KRDCNGATPLHLAAENGE------LKVLKLLINKYPDAIEIRDNSDR-SILHVAAKHGN-----WNIVSFILK-SPEMEN 258 (534)
Q Consensus 192 ~~~~~g~tpL~~A~~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~~~~~Ll~-~~~~~~ 258 (534)
.+|..|.||||+|+..|+ .+++++|+++|++ ++.+|..|+ ||||+|+..+. .+++++|++ .|++
T Consensus 70 ~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad-in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad-- 146 (186)
T 3t8k_A 70 SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD-ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQ-- 146 (186)
T ss_dssp CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC-SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCC--
T ss_pred CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC-CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCC--
Confidence 667888888888888776 5778888888888 788888888 88888888443 458888888 7776
Q ss_pred cccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhcc
Q 039300 259 LINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKN 298 (534)
Q Consensus 259 ~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n 298 (534)
++.+|..|.||||+|+..++.+++++|.+. ..+.+.++
T Consensus 147 -~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~-~~~~~~~~ 184 (186)
T 3t8k_A 147 -LLIKDKWGLTALEFVKRCQKPIALKMMEDY-IKKYNLKE 184 (186)
T ss_dssp -TTCCCTTSCCHHHHHHTTTCHHHHHHHHHH-HHHHTCCC
T ss_pred -CcccCCCCCCHHHHHHHcCCHHHHHHHHHH-HHHHhccc
Confidence 888888888888888888888888888776 33444443
No 84
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=1.8e-24 Score=193.16 Aligned_cols=161 Identities=18% Similarity=0.147 Sum_probs=139.1
Q ss_pred CCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcH----HHHHHHHHhCCCccccccCCCCcHHHHH
Q 039300 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGEL----KVLKLLINKYPDAIEIRDNSDRSILHVA 238 (534)
Q Consensus 163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~----~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 238 (534)
++++|+.|+..|+.+.++.+++.+.+. ..+..|.||||+|+.+|+. +++++|+++|++ ++.+|..|+||||+|
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad-vn~~d~~g~TpLh~a 82 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD-IKSRTKEGTTLFFPL 82 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC-SSCCCTTCCCTHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC-CCCCCCCCCcHHHHH
Confidence 568999999999999999999887542 2236799999999999975 599999999999 899999999999999
Q ss_pred HhcCC------HHHHHHHHhCCcccccccccCCCCC-cHHHHHHhcCC-----hhHHHHhhhCcccchhhccccCCCCCh
Q 039300 239 AKHGN------WNIVSFILKSPEMENLINLIDRNGN-TSLHLAAMGLH-----SDVVFTLSRHKSVNIRAKNRSARNNTT 306 (534)
Q Consensus 239 ~~~~~------~~~~~~Ll~~~~~~~~~~~~d~~g~-t~Lh~A~~~~~-----~~~v~~Ll~~~~~~~~~~n~~~~g~t~ 306 (534)
+..++ .+++++|+++|++ +|.+|..|+ ||||+|+..+. .+++++|++..|+|++.+|. .|+||
T Consensus 83 ~~~~~~~~~~~~~iv~~Ll~~Gad---in~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~--~G~Tp 157 (186)
T 3t8k_A 83 FQGGGNDITGTTELCKIFLEKGAD---ITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDK--WGLTA 157 (186)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCC---SSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCT--TSCCH
T ss_pred HHcCCcchhhHHHHHHHHHHCCCC---CCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCC--CCCCH
Confidence 99987 5789999999988 999999999 99999999554 45899999945899999999 99999
Q ss_pred HHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300 307 LEIDEMTRADVTEVQKHLTLKALKTAYAKRAL 338 (534)
Q Consensus 307 l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~ 338 (534)
|++|.. .....++++|.+...+.+.
T Consensus 158 L~~A~~-------~~~~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 158 LEFVKR-------CQKPIALKMMEDYIKKYNL 182 (186)
T ss_dssp HHHHHT-------TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHH-------cCCHHHHHHHHHHHHHHhc
Confidence 999998 4556777888877655443
No 85
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.1e-22 Score=169.36 Aligned_cols=93 Identities=28% Similarity=0.452 Sum_probs=80.6
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|+||||.|++.|+.+++++|+++|++++. +|..|.||||+|+..|+.+++++|++.|+++. ..|.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~ 66 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDK 66 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCC-------------cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCC
Confidence 488999999999999999999999887763 78889999999999999999999999988874 6678
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSE 107 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 107 (534)
.|.||||+|+..|+.+++++|++++++
T Consensus 67 ~g~t~l~~A~~~~~~~~~~~Ll~~g~~ 93 (126)
T 1n0r_A 67 NGRTPLHLAARNGHLEVVKLLLEAGAD 93 (126)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCcHHHHHHHcChHHHHHHHHHcCCC
Confidence 888999999999999999999887765
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.89 E-value=1.3e-23 Score=177.92 Aligned_cols=130 Identities=16% Similarity=0.145 Sum_probs=122.1
Q ss_pred cccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCC-CCc
Q 039300 191 YKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRN-GNT 269 (534)
Q Consensus 191 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~-g~t 269 (534)
+..|..|.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+. ++.+++++|++.+++ ++.+|.. |+|
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~~g~t 80 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGAD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---PNCADPATLTR 80 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC---SSCCBTTTTBC
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC---CCCcCCCCCCC
Confidence 46788999999999999999999999999988 89999999999999999 999999999999877 8999999 999
Q ss_pred HHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhh
Q 039300 270 SLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAK 335 (534)
Q Consensus 270 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~ 335 (534)
|||+|+..|+.+++++|+++ |++++.+|. .|.|||++|.. ....+++++|+++|++
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~-ga~~~~~d~--~g~tpl~~A~~-------~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRA-GARLDVCDA--WGRLPVDLAEE-------QGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-CCCCCCCSS--SSSCHHHHHHH-------HTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHc-CCCCCccCC--CCCCHHHHHHH-------cCCHHHHHHHHHcCCC
Confidence 99999999999999999998 799999999 99999999998 5568899999999974
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=3.7e-23 Score=175.15 Aligned_cols=127 Identities=25% Similarity=0.328 Sum_probs=117.8
Q ss_pred cccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300 158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237 (534)
Q Consensus 158 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 237 (534)
.....+.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++++++ ++..|..|+||||+
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGAD-VNAVDAIGFTPLHL 86 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHH
Confidence 344567899999999999999999999999865 6788999999999999999999999999998 89999999999999
Q ss_pred HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300 238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289 (534)
Q Consensus 238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 289 (534)
|+..|+.+++++|++++++ ++.+|.+|+||||+|+..++.+++++|++.
T Consensus 87 A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGAD---VNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHcCCC---CcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 9999999999999999877 899999999999999999999999999986
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=8.8e-23 Score=170.05 Aligned_cols=126 Identities=42% Similarity=0.648 Sum_probs=118.6
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhc
Q 039300 162 HQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKH 241 (534)
Q Consensus 162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 241 (534)
+|.||||.|+..|+.+++++|++.|.++. ..|..|.||||.|+..|+.+++++|++.+++ ++.+|..|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHc
Confidence 48999999999999999999999998865 6788999999999999999999999999998 889999999999999999
Q ss_pred CCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccc
Q 039300 242 GNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVN 293 (534)
Q Consensus 242 ~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~ 293 (534)
++.+++++|++.+.+ ++.+|..|+||||+|+..++.+++++|+++ |+|
T Consensus 79 ~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-Gad 126 (126)
T 1n0r_A 79 GHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEA-GAY 126 (126)
T ss_dssp TCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-TCC
T ss_pred ChHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCcHHHHHHHHHc-CCC
Confidence 999999999999877 899999999999999999999999999987 553
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=6.1e-23 Score=173.77 Aligned_cols=115 Identities=24% Similarity=0.249 Sum_probs=83.9
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA 81 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~ 81 (534)
|.||||+||+.|+.+++++|+++|++++ .+|..|.||||+|+.+|+.+++++|+++|++++ ..|..
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~ 79 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVN-------------AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAI 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTT
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCC
Confidence 4678888888888888888888887766 367788888888888888888888888887764 56778
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcch
Q 039300 82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDL 132 (534)
Q Consensus 82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 132 (534)
|.||||+|+..|+.+++++|++++++ ++..+. .|.||||+|+..++.++
T Consensus 80 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~-~g~tpl~~A~~~~~~~~ 128 (136)
T 2jab_A 80 GFTPLHLAAFIGHLEIAEVLLKHGAD-VNAQDK-FGKTAFDISIGNGNEDL 128 (136)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHHHHTTCHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCC-CcCcCC-CCCCHHHHHHHCCCHHH
Confidence 88888888888888888888887765 233332 34444444444444333
No 90
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.89 E-value=3.3e-23 Score=179.90 Aligned_cols=113 Identities=19% Similarity=0.201 Sum_probs=86.7
Q ss_pred hhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCc-HHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcH
Q 039300 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGAT-PLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSI 234 (534)
Q Consensus 156 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 234 (534)
++..|..|+||||+|+ .|+.+++++|++.|+++. .+|..|.| |||+|+..|+.+++++|++++++ ++.+|..|+||
T Consensus 38 ~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tp 114 (156)
T 1bi7_B 38 PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLP 114 (156)
T ss_dssp TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-SSCCCTTCCCH
T ss_pred CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCC-CcccCCCCCCH
Confidence 4555667899999985 899999999999998865 67888998 99999999999999999999998 89999999999
Q ss_pred HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHH
Q 039300 235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA 274 (534)
Q Consensus 235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A 274 (534)
||+|+..|+.+++++|+++|++ ++.+|..|.||.+-+
T Consensus 115 l~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 115 VDLAEELGHRDVARYLRAAAGG---TRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHHHTCHHHHHHHSSCC--------------------
T ss_pred HHHHHHhCHHHHHHHHHHcCCC---CCccCcCcCcccccC
Confidence 9999999999999999999887 899999999997743
No 91
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=6.8e-23 Score=182.98 Aligned_cols=138 Identities=20% Similarity=0.225 Sum_probs=122.3
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA 81 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~ 81 (534)
|+||||+||+.|+.++++.|++ |++++ .+|..|.||||+|+..|+.+++++|+++|++++...+..
T Consensus 44 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~ 109 (183)
T 3deo_A 44 YETPWWTAARKADEQALSQLLE-DRDVD-------------AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 109 (183)
T ss_dssp HHHHHHHHHHTTCHHHHHHHTT-TSCTT-------------CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred CCCHHHHHHHcCCHHHHHHHHh-cCCCC-------------CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCC
Confidence 6799999999999999999999 88777 488999999999999999999999999999987544488
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300 82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161 (534)
Q Consensus 82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 161 (534)
|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++.+
T Consensus 110 g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~-~g~tpl~~A~~~~~~~------------------------------ 157 (183)
T 3deo_A 110 GLTALHMAAGYVRPEVVEALVELGAD-IEVEDE-RGLTALELAREILKTT------------------------------ 157 (183)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCT-TSCCHHHHHHHHHHTC------------------------------
T ss_pred CCCHHHHHHhcCcHHHHHHHHHcCCC-CcCCCC-CCCCHHHHHHHhccCc------------------------------
Confidence 99999999999999999999999987 566776 9999999998765432
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHhh
Q 039300 162 HQRNPLHYAAASGNVQMVQRLLEA 185 (534)
Q Consensus 162 ~g~tpL~~A~~~g~~~~v~~Ll~~ 185 (534)
.+.+||++|+..|..+++++|.++
T Consensus 158 ~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 158 PKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccHHHHHHHcCHHHHHHHHHHh
Confidence 357899999999999999998764
No 92
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=7.6e-23 Score=191.50 Aligned_cols=140 Identities=19% Similarity=0.203 Sum_probs=115.6
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccC
Q 039300 2 DETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKA 81 (534)
Q Consensus 2 G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~ 81 (534)
|+||||+||+.|+.++|+.|++ |+++| .+|..|.||||+|+.+|+.++|++|+++|++++...+..
T Consensus 45 g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-------------~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~ 110 (244)
T 3ui2_A 45 YETPWWTAARKADEQALSQLLE-DRDVD-------------AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG 110 (244)
T ss_dssp HHHHHHHHHTTTCHHHHHHTTT-TCCTT-------------CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSS
T ss_pred CCCHHHHHHHcCCHHHHHHHHc-CCCCC-------------CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCC
Confidence 6789999999999999999999 87777 478889999999999999999999999998886544478
Q ss_pred CCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccC
Q 039300 82 YQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDW 161 (534)
Q Consensus 82 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~ 161 (534)
|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++. .
T Consensus 111 g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~d~-~g~t~l~~A~~~~~~------------------------------~ 158 (244)
T 3ui2_A 111 GLTALHMAAGYVRPEVVEALVELGAD-IEVEDE-RGLTALELAREILKT------------------------------T 158 (244)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCT-TCCCHHHHHHHHHTT------------------------------C
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCC-CCCcHHHHHHHHHhc------------------------------c
Confidence 99999999999999999999999887 566666 888888888754321 2
Q ss_pred CCCcHHHHHHhCCCHHHHHHHHhhch
Q 039300 162 HQRNPLHYAAASGNVQMVQRLLEASK 187 (534)
Q Consensus 162 ~g~tpL~~A~~~g~~~~v~~Ll~~~~ 187 (534)
.+.||||+|+..|+.+++++|++.+.
T Consensus 159 ~~~~~l~~a~~~g~~~iv~~L~~~~~ 184 (244)
T 3ui2_A 159 PKGNPMQFGRRIGLEKVINVLEGQVF 184 (244)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred CCCCHHHHHHHcChHHHHHHHHHhcc
Confidence 46788888888888888888887654
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=1.1e-22 Score=172.51 Aligned_cols=114 Identities=24% Similarity=0.349 Sum_probs=80.5
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHH
Q 039300 192 KRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSL 271 (534)
Q Consensus 192 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 271 (534)
.+|..|.||||.|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++ ++.+|..|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCCCCHH
Confidence 3566677777777777777777777776666 666677777777777777777777777776655 666777777777
Q ss_pred HHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300 272 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM 312 (534)
Q Consensus 272 h~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~ 312 (534)
|+|+..++.+++++|+++ |++++.+|. .|.||+++|..
T Consensus 81 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~tpl~~A~~ 118 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSY-GASRNAVNI--FGLRPVDYTDD 118 (137)
T ss_dssp HHHHHTTCHHHHHHHHHT-TCCTTCCCT--TSCCGGGGCCC
T ss_pred HHHHHcCCHHHHHHHHHc-CCCCCCCCC--CCCCHHHHHhh
Confidence 777777777777777766 667777777 77777777765
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=7.3e-23 Score=173.51 Aligned_cols=127 Identities=25% Similarity=0.342 Sum_probs=117.1
Q ss_pred cccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300 158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237 (534)
Q Consensus 158 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 237 (534)
.+|..|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKAL-VNTTGYQNDSPLHD 82 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCGGGCCHHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc-ccCcCCCCCCHHHH
Confidence 578899999999999999999999999999865 7788999999999999999999999999998 89999999999999
Q ss_pred HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhC
Q 039300 238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRH 289 (534)
Q Consensus 238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~ 289 (534)
|+..|+.+++++|++.+++ ++.+|..|+||||+|+..+..+++++|.+.
T Consensus 83 A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGAS---RNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCC---TTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 9999999999999999887 899999999999999998888888877654
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.85 E-value=1.1e-21 Score=175.09 Aligned_cols=140 Identities=24% Similarity=0.288 Sum_probs=122.7
Q ss_pred ccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc-CCCCcHHHH
Q 039300 159 LDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD-NSDRSILHV 237 (534)
Q Consensus 159 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~ 237 (534)
.+..|.||||.|+..|+.++++.|++ |.++. ..|..|.||||+|+..|+.+++++|++++++ ++.+| ..|+||||+
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHH
Confidence 34568899999999999999999999 77655 6889999999999999999999999999998 77777 889999999
Q ss_pred HHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhch
Q 039300 238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADV 317 (534)
Q Consensus 238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~ 317 (534)
|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++. . .+.+|++++..
T Consensus 117 A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~------------------~--~~~~~l~~a~~----- 168 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILKT------------------T--PKGNPMQFGRR----- 168 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHHHT------------------C--CCCSHHHHHHH-----
T ss_pred HHhcCcHHHHHHHHHcCCC---CcCCCCCCCCHHHHHHHhccC------------------c--ccccHHHHHHH-----
Confidence 9999999999999999877 899999999999999864322 2 67899999987
Q ss_pred HHHHHHhHHHHHHH
Q 039300 318 TEVQKHLTLKALKT 331 (534)
Q Consensus 318 ~~~~~~~~~~~L~~ 331 (534)
.....++++|.+
T Consensus 169 --~~~~~i~~~L~~ 180 (183)
T 3deo_A 169 --IGLEKVINVLEG 180 (183)
T ss_dssp --HHHHHHHHHHHT
T ss_pred --cCHHHHHHHHHH
Confidence 566777777754
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=2.4e-21 Score=160.76 Aligned_cols=112 Identities=25% Similarity=0.237 Sum_probs=83.0
Q ss_pred CCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHH
Q 039300 194 DCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273 (534)
Q Consensus 194 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~ 273 (534)
+..|.||||.|+..|+.++++.|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHH
Confidence 34566777777777777777777777776 677777777777777777777777777777665 77777777777777
Q ss_pred HHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300 274 AAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM 312 (534)
Q Consensus 274 A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~ 312 (534)
|+..++.+++++|+++ |++++.+|. .|.||+++|..
T Consensus 80 A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~ 115 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSK-GADKTVKGP--DGLTAFEATDN 115 (123)
T ss_dssp HHHHTCHHHHHHHHHT-TCCTTCCCT--TSCCHHHHCCC
T ss_pred HHHcCCHHHHHHHHHc-CCCCCCcCC--CCCCHHHHhCC
Confidence 7777777777777776 677777777 77777777754
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.85 E-value=1.1e-21 Score=162.89 Aligned_cols=112 Identities=21% Similarity=0.306 Sum_probs=103.4
Q ss_pred cCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHH
Q 039300 160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAA 239 (534)
Q Consensus 160 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 239 (534)
+..|.||||+|+..|+.++++.|++.|.++. ..|..|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGAD-INAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHH
Confidence 4568899999999999999999999998865 7788999999999999999999999999998 8999999999999999
Q ss_pred hcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHh
Q 039300 240 KHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAM 276 (534)
Q Consensus 240 ~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~ 276 (534)
..|+.+++++|++.+++ ++.+|.+|+||||+|..
T Consensus 82 ~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGAD---KTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHCCC
T ss_pred HcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHhCC
Confidence 99999999999999887 89999999999999943
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=2.3e-21 Score=181.46 Aligned_cols=143 Identities=24% Similarity=0.269 Sum_probs=127.5
Q ss_pred cCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCcccccc-CCCCcHHHHH
Q 039300 160 DWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRD-NSDRSILHVA 238 (534)
Q Consensus 160 d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A 238 (534)
+..|.||||+|+..|+.++++.|++ |++++ .+|..|.||||+|+..|+.+++++|++++++ ++.+| ..|+||||+|
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~g~t~L~~A 118 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGAD-LDHRDMRGGLTALHMA 118 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCcCCCCCCCCHHHHH
Confidence 3568899999999999999999999 87655 7889999999999999999999999999999 77777 8899999999
Q ss_pred HhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchH
Q 039300 239 AKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVT 318 (534)
Q Consensus 239 ~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~ 318 (534)
+.+|+.+++++|+++|++ ++.+|..|+||||+|+..++ +. .+.||+++|..
T Consensus 119 ~~~g~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~~~~~------------------~~--~~~~~l~~a~~------ 169 (244)
T 3ui2_A 119 AGYVRPEVVEALVELGAD---IEVEDERGLTALELAREILK------------------TT--PKGNPMQFGRR------ 169 (244)
T ss_dssp HHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHHHT------------------TC--CCSSHHHHHHH------
T ss_pred HHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHHHHHHh------------------cc--CCCCHHHHHHH------
Confidence 999999999999999887 89999999999999985222 13 78999999998
Q ss_pred HHHHHhHHHHHHHHhhh
Q 039300 319 EVQKHLTLKALKTAYAK 335 (534)
Q Consensus 319 ~~~~~~~~~~L~~~ga~ 335 (534)
.....++++|.+.+.+
T Consensus 170 -~g~~~iv~~L~~~~~~ 185 (244)
T 3ui2_A 170 -IGLEKVINVLEGQVFE 185 (244)
T ss_dssp -HHHHHHHHHHHHHHEE
T ss_pred -cChHHHHHHHHHhccc
Confidence 6677899999987654
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=4.2e-22 Score=183.79 Aligned_cols=138 Identities=20% Similarity=0.260 Sum_probs=116.1
Q ss_pred hhcccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHh-CCCccccccCCCCcH
Q 039300 156 INRLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINK-YPDAIEIRDNSDRSI 234 (534)
Q Consensus 156 ~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~ 234 (534)
++..+..|.||||+|+..|+.++++.|++.|+++. .+|..|.||||+|+..|+.+++++|++. +.+ ++.+|..|+||
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~d~~g~tp 143 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIE-LNQQNKLGDTA 143 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC-CCCCCTTSCCH
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC-ccccCCCCCCH
Confidence 45567789999999999999999999999998865 7788999999999999999999999998 666 89999999999
Q ss_pred HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccc
Q 039300 235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299 (534)
Q Consensus 235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~ 299 (534)
||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+..++.++++.|+.. +++.+.+|.
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~ 204 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGAR---TDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNA 204 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCC---SCCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCC---CccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccch
Confidence 9999999999999999999887 899999999999999999999999999988 677777666
No 100
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=9.4e-21 Score=182.58 Aligned_cols=137 Identities=17% Similarity=0.244 Sum_probs=122.3
Q ss_pred CCcHHHHHHhCCCHHHHHHHHhhchhhhcc-----cCCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccccCCCCcH
Q 039300 163 QRNPLHYAAASGNVQMVQRLLEASKQLAYK-----RDCNGATPLHLAAEN---GELKVLKLLINKYPDAIEIRDNSDRSI 234 (534)
Q Consensus 163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 234 (534)
..++|+.|+..|+.+.++.|++.|+++... .+..|.||||+|+.. |+.+++++|++.+++ ++.+|..|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad-vn~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC-TTCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC-CCCCCCCCCCH
Confidence 457899999999999999999999987642 588999999999997 899999999999998 89999999999
Q ss_pred HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHh
Q 039300 235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEM 312 (534)
Q Consensus 235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~ 312 (534)
||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+..++.+++++|+++ |++ .|.|||++|..
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad---~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~--------~g~tpLh~A~~ 295 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQA-QAG--------TFAFPLHVDYS 295 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC---CSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH--------TTSSCCC----
T ss_pred HHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC--------CCCChhHHHHh
Confidence 9999999999999999999887 899999999999999999999999999987 433 68899999987
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=1.1e-20 Score=182.19 Aligned_cols=204 Identities=16% Similarity=0.129 Sum_probs=142.6
Q ss_pred cCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHH
Q 039300 44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123 (534)
Q Consensus 44 ~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~ 123 (534)
.|....+.+..+...|+.. +..+.+..............+. ..+..+++..+..............++|+.
T Consensus 87 lD~w~~~~l~~~~~~GN~~-~n~i~E~~l~~~~~~kP~~~s~--------~~~r~~~I~~Ky~~~~f~~~~~~~~~~L~~ 157 (301)
T 2b0o_E 87 LDLLGPSELLLALNMGNTS-FNEVMEAQLPSHGGPKPSAESD--------MGTRRDYIMAKYVEHRFARRCTPEPQRLWT 157 (301)
T ss_dssp TSCCCHHHHHHHHHCCHHH-HHHHHTTTCCSSSCSCCCTTCC--------HHHHHHHHHHHHTSCTTSCCCC-CHHHHHH
T ss_pred cCCCCHHHHHHHHHcCCHH-HHHHHHHhhhhccCCCCCCccc--------HHHHHHHHHHHHHhhhhhcccCchHHHHhh
Confidence 3556667788888888874 4444554322110111111111 112222322222221111112245688999
Q ss_pred HHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhc------ccCCCCcHHHHHHhC---CCHHHHHHHHhhchhhhcccC
Q 039300 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINR------LDWHQRNPLHYAAAS---GNVQMVQRLLEASKQLAYKRD 194 (534)
Q Consensus 124 A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~------~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~ 194 (534)
|+..++.+. +..+++.. .+++. .+..|.||||+|+.. |+.+++++|++.|++++ .+|
T Consensus 158 A~~~g~~~~---------v~~ll~~g----~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d 223 (301)
T 2b0o_E 158 AICNRDLLS---------VLEAFANG----QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKA 223 (301)
T ss_dssp HHHTTCHHH---------HHHHHHTT----CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCC
T ss_pred hhhccCHHH---------HHHHHhcC----CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCC
Confidence 999999888 77777543 44555 688999999999997 89999999999999865 678
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHH
Q 039300 195 CNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLA 274 (534)
Q Consensus 195 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A 274 (534)
..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|++.+++ .|.||||+|
T Consensus 224 ~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~---------~g~tpLh~A 293 (301)
T 2b0o_E 224 ADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG---------TFAFPLHVD 293 (301)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH---------TTSSCCC--
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC---------CCCChhHHH
Confidence 9999999999999999999999999999 899999999999999999999999999998753 589999999
Q ss_pred HhcCCh
Q 039300 275 AMGLHS 280 (534)
Q Consensus 275 ~~~~~~ 280 (534)
+.+|+.
T Consensus 294 ~~~g~~ 299 (301)
T 2b0o_E 294 YSWVIS 299 (301)
T ss_dssp ------
T ss_pred HhcCCc
Confidence 998864
No 102
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=7.3e-21 Score=149.34 Aligned_cols=93 Identities=28% Similarity=0.430 Sum_probs=86.4
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|+||||+||..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+++. ..|.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-------------~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~ 66 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-------------AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDK 66 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCC
Confidence 48999999999999999999999999887 489999999999999999999999999999885 6799
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCC
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSE 107 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 107 (534)
.|.||||+|+..|+.+++++|+++|++
T Consensus 67 ~g~t~l~~A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 67 NGRTPLHLAARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999874
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=9.5e-21 Score=180.47 Aligned_cols=124 Identities=17% Similarity=0.245 Sum_probs=115.2
Q ss_pred CCcHHHHHHhCCCHHHHHHHHhhchhhhc-----ccCCCCCcHHHHHHHc---CcHHHHHHHHHhCCCccccccCCCCcH
Q 039300 163 QRNPLHYAAASGNVQMVQRLLEASKQLAY-----KRDCNGATPLHLAAEN---GELKVLKLLINKYPDAIEIRDNSDRSI 234 (534)
Q Consensus 163 g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 234 (534)
..++|+.|+..|+.+.+..+++.|.+... ..|..|.||||+|+.. |+.+++++|+++|++ ++.+|..|+||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~-in~~d~~g~Tp 208 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN-LDKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC-TTCCCTTCCCH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC-ccccCCCCCCH
Confidence 34689999999999999999999997542 2478899999999999 899999999999999 89999999999
Q ss_pred HHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCc
Q 039300 235 LHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHK 290 (534)
Q Consensus 235 Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~ 290 (534)
||+|+..|+.+++++|++.|++ ++.+|.+|.||||+|+..|+.+++++|++++
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g 261 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKAS---IEIANESGETPLDIAKRLKHEHCEELLTQAL 261 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCC---CCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 9999999999999999999987 9999999999999999999999999999984
No 104
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.83 E-value=1.1e-20 Score=174.23 Aligned_cols=132 Identities=23% Similarity=0.248 Sum_probs=114.3
Q ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhC-CcccccccccCCCCCcHH
Q 039300 193 RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKS-PEMENLINLIDRNGNTSL 271 (534)
Q Consensus 193 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~-~~~~~~~~~~d~~g~t~L 271 (534)
.+..|.||||+|+..|+.++++.|++.+.+ ++.+|..|+||||+|+.+|+.+++++|++. +++ ++.+|..|+|||
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~d~~g~tpL 144 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---LNQQNKLGDTAL 144 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---CCCCCTTSCCHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---ccccCCCCCCHH
Confidence 466799999999999999999999999988 899999999999999999999999999998 766 899999999999
Q ss_pred HHHHhcCChhHHHHhhhCcccchhhccccCCCCChHHHhHhhhhchHHHHHHhHHHHHHHHhhhccC
Q 039300 272 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTLEIDEMTRADVTEVQKHLTLKALKTAYAKRAL 338 (534)
Q Consensus 272 h~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l~~a~~~~~~~~~~~~~~~~~~L~~~ga~~~~ 338 (534)
|+|+..|+.+++++|+++ |++++.+|. .|.||+++|.. ....++++.|.+.|+....
T Consensus 145 ~~A~~~~~~~~v~~Ll~~-ga~~~~~~~--~g~t~l~~A~~-------~~~~~~l~~l~~~~~~~~~ 201 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAK-GARTDLRNI--EKKLAFDMATN-------AACASLLKKKQGTDAVRTL 201 (222)
T ss_dssp HHHHHHTCHHHHHHHHHH-TCCSCCCCT--TSCCHHHHCCS-------HHHHHHHC-----------
T ss_pred HHHHHcCCHHHHHHHHHc-CCCCccccC--CCCCHHHHhcc-------hhHHHHHHHHhccchhhhc
Confidence 999999999999999998 899999999 99999999998 6678888899988887654
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=3.8e-20 Score=182.38 Aligned_cols=147 Identities=20% Similarity=0.222 Sum_probs=117.6
Q ss_pred ccCCCCcHHHHHHhC-CCHHHHHHHHhhchhhhcccC--CCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHH
Q 039300 159 LDWHQRNPLHYAAAS-GNVQMVQRLLEASKQLAYKRD--CNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSIL 235 (534)
Q Consensus 159 ~d~~g~tpL~~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 235 (534)
.+..+.|+||.|+.. |+.++++.|++.|++++ ..+ ..|.||||+|+..|+.+++++|++++++ ++..|..|+|||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad-vn~~d~~G~TpL 272 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGAN-VNQADSAGRGPL 272 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCCCCCCCCHH
Confidence 344566899999999 99999999999999876 455 7899999999999999999999999998 899999999999
Q ss_pred HHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcc--cchhhccccCCCCChHHHhHh
Q 039300 236 HVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKS--VNIRAKNRSARNNTTLEIDEM 312 (534)
Q Consensus 236 h~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~--~~~~~~n~~~~g~t~l~~a~~ 312 (534)
|+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|+..+. .+....+. .+.|+++++..
T Consensus 273 h~A~~~g~~~~v~~LL~~Gad---~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~--~~~t~l~i~~~ 346 (368)
T 3jue_A 273 HHATILGHTGLACLFLKRGAD---LGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQA--GDETYLDIFRD 346 (368)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHHHcCcHHHHHHHHHCcCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCC--CCCCHHHHHHH
Confidence 999999999999999999887 89999999999999999999999999997642 23334455 78899998876
No 106
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.81 E-value=2.9e-19 Score=170.19 Aligned_cols=197 Identities=17% Similarity=0.099 Sum_probs=144.8
Q ss_pred cCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHH
Q 039300 44 RDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHF 123 (534)
Q Consensus 44 ~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~ 123 (534)
.|..+.++|+.+...|+..+.+++...-+.........+... ......-..+++............. ...++|+.
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~----~~~~~fI~aKYl~~~f~~~~~~~~~-~~l~~l~~ 136 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM----IARKDYITAKYMERRYARKKHADTA-AKLHSLCE 136 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCH----HHHHHHHHHHHTTCTTSCCCSSSHH-HHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCH----HHHHHHHHHHHHHhhcccccccccc-hhhhhhhh
Confidence 678899999999999998887776544322211011111111 1122222233444333322111111 34578999
Q ss_pred HHHhcCcchhhhhhhHHHHHHHHHHhCCChhh--hhcccCCCCcHHHHHHhC---CCHHHHHHHHhhchhhhcccCCCCC
Q 039300 124 FVMRQNYDLSKSMQFLQFIDIMVKILGTNKDL--INRLDWHQRNPLHYAAAS---GNVQMVQRLLEASKQLAYKRDCNGA 198 (534)
Q Consensus 124 A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--~~~~d~~g~tpL~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~ 198 (534)
|+..++.+. +..+++...+.... ++..|..|.||||+|+.. |+.+++++|+++|++++ .+|..|.
T Consensus 137 a~~~~d~~~---------~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in-~~d~~g~ 206 (278)
T 1dcq_A 137 AVKTRDIFG---------LLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGS 206 (278)
T ss_dssp HHHTTCHHH---------HHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCC
T ss_pred HhhhcccHH---------HHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc-ccCCCCC
Confidence 999999887 66666654321111 555688999999999999 89999999999999866 7899999
Q ss_pred cHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcc
Q 039300 199 TPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEM 256 (534)
Q Consensus 199 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~ 256 (534)
||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++.++.
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999 899999999999999999999999999998763
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=1.7e-19 Score=141.51 Aligned_cols=90 Identities=44% Similarity=0.672 Sum_probs=71.5
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHH
Q 039300 196 NGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAA 275 (534)
Q Consensus 196 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~ 275 (534)
+|.||||+|+..|+.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++ ++.+|.+|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHH
Confidence 367888888888888888888888777 777888888888888888888888888887766 7778888888888888
Q ss_pred hcCChhHHHHhhhC
Q 039300 276 MGLHSDVVFTLSRH 289 (534)
Q Consensus 276 ~~~~~~~v~~Ll~~ 289 (534)
..|+.+++++|+++
T Consensus 77 ~~~~~~~~~~Ll~~ 90 (93)
T 1n0q_A 77 RNGHLEVVKLLLEA 90 (93)
T ss_dssp HTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHc
Confidence 88888888888776
No 108
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=1.1e-19 Score=148.73 Aligned_cols=109 Identities=31% Similarity=0.443 Sum_probs=98.1
Q ss_pred ccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHH
Q 039300 192 KRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSL 271 (534)
Q Consensus 192 ~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~L 271 (534)
.+|.+|.||||.|+..|+.++++.|++.+++ ++..|..|+||||+|+..++.+++++|++.+++ ++.+|..|.|||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tpl 79 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTPE 79 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCTT
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCHH
Confidence 4688999999999999999999999999988 888999999999999999999999999999876 889999999999
Q ss_pred HHHHhcCChhHHHHhhhCcccchhhccccCCCCChH
Q 039300 272 HLAAMGLHSDVVFTLSRHKSVNIRAKNRSARNNTTL 307 (534)
Q Consensus 272 h~A~~~~~~~~v~~Ll~~~~~~~~~~n~~~~g~t~l 307 (534)
|+|+..++.+++++|+++ |+++|.++. .|.||-
T Consensus 80 ~~A~~~~~~~~~~~Ll~~-ga~~n~~~~--~~~~~~ 112 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAK-GADVNARSW--GSSHHH 112 (115)
T ss_dssp HHHHTTTCHHHHHHHHTT-SSSHHHHSC--CCC---
T ss_pred HHHHHCCCHHHHHHHHHc-CCCCCcCCc--cccccc
Confidence 999999999999999988 899999999 888773
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=1.9e-19 Score=186.35 Aligned_cols=131 Identities=17% Similarity=0.232 Sum_probs=116.1
Q ss_pred CcHHHHHHhCCCHHHHHHHHhhchhhhcc-----cCCCCCcHHHHHHH---cCcHHHHHHHHHhCCCccccccCCCCcHH
Q 039300 164 RNPLHYAAASGNVQMVQRLLEASKQLAYK-----RDCNGATPLHLAAE---NGELKVLKLLINKYPDAIEIRDNSDRSIL 235 (534)
Q Consensus 164 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~---~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 235 (534)
.+.||.|+..|+.+.++.|++.|++++.. .|..|.||||+|+. .|+.+++++|+++|++ ++.+|..|+|||
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~-vn~~d~~g~TpL 211 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH-LDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCC-TTCCCSSSCCHH
T ss_pred HHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCC-CCccCCCCCcHH
Confidence 36799999999999999999999986532 27789999999976 8999999999999998 899999999999
Q ss_pred HHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHHHHhcCChhHHHHhhhCcccchhhccc
Q 039300 236 HVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHLAAMGLHSDVVFTLSRHKSVNIRAKNR 299 (534)
Q Consensus 236 h~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~n~ 299 (534)
|+|+.+|+.+++++|+++|++ +|.+|.+|+||||+|+..|+.+++++|+++ |++++....
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~~~~ 271 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRAL---VGTVNEAGETALDIARKKHHKECEELLEQA-QAGTFAFPL 271 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCC---CSCCCTTCCCHHHHHHHTTCHHHHHHHHHT-CC-------
T ss_pred HHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCCCcc
Confidence 999999999999999999987 999999999999999999999999999998 788766444
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=4e-19 Score=183.85 Aligned_cols=119 Identities=13% Similarity=0.006 Sum_probs=94.1
Q ss_pred CHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHH---hCcHHHHHHHHHcCCCCCcCCcc
Q 039300 4 TPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVT---KKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 4 T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~---~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
+.||.|+..|+.+.|+.|++.|+++|.... ....|..|.||||+||. .|+.++|++|+++|++++ ..|.
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~-------~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn-~~d~ 205 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLP-------GPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAA 205 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBC-------CSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTT-CCCS
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCC-------CcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCC-ccCC
Confidence 569999999999999999999999884210 11248899999999976 999999999999999985 7799
Q ss_pred CCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcch
Q 039300 81 AYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDL 132 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 132 (534)
.|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++.++
T Consensus 206 ~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~-~g~tpl~~A~~~~~~~~ 255 (497)
T 3lvq_E 206 DGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNE-AGETALDIARKKHHKEC 255 (497)
T ss_dssp SSCCHHHHHTTTTCHHHHHHHHHTCCC-CSCCCT-TCCCHHHHHHHTTCHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCC-CCCCHHHHHHHcCCHHH
Confidence 999999999999999999999999887 333333 34444444444444333
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.79 E-value=3.7e-19 Score=175.33 Aligned_cols=114 Identities=17% Similarity=0.202 Sum_probs=85.1
Q ss_pred CCHHHHHHhc-CCHHHHHHHHhcCccccccCchhhhhhhhcccC--CCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCc
Q 039300 3 ETPLHIAARI-GDHAIVSEIMKYVPAVNQAGSASVLETLFGMRD--IEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYIN 79 (534)
Q Consensus 3 ~T~Lh~Aa~~-g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d--~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~ 79 (534)
.|+||.|+.. |+.++++.|+++|+++|. .| ..|.||||+|+..|+.++|++|+++|++++ ..|
T Consensus 200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-------------~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d 265 (368)
T 3jue_A 200 GALLFRASGHPPSLPTMADALAHGADVNW-------------VNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QAD 265 (368)
T ss_dssp HHHHHHHTSSSCCHHHHHHHHHTTCCTTC-------------CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred CcHHHHHHHccCCHHHHHHHHHcCCCCCc-------------cccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCC
Confidence 4678888888 888888888888887763 44 678888888888888888888888887775 667
Q ss_pred cCCCcHHHHHHHcCcHHHHHHHHhcCCCCcccCCCCCCchHHHHHHHhcCcch
Q 039300 80 KAYQTPLSIAIDVRLNDIACFIIDKSSESLNATRLPDELTLLHFFVMRQNYDL 132 (534)
Q Consensus 80 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~ 132 (534)
..|.||||+|+..|+.+++++|+++|++ ++..+. .|.||||+|+..++.++
T Consensus 266 ~~G~TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~-~G~TpL~~A~~~g~~~i 316 (368)
T 3jue_A 266 SAGRGPLHHATILGHTGLACLFLKRGAD-LGARDS-EGRDPLTIAMETANADI 316 (368)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCT-TSCCHHHHHHHTTCHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHCcCC-CCCcCC-CCCCHHHHHHHCCCHHH
Confidence 7888888888888888888888887776 344444 55666666666666555
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.76 E-value=1e-18 Score=142.94 Aligned_cols=108 Identities=31% Similarity=0.456 Sum_probs=100.4
Q ss_pred cccCCCCcHHHHHHhCCCHHHHHHHHhhchhhhcccCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHH
Q 039300 158 RLDWHQRNPLHYAAASGNVQMVQRLLEASKQLAYKRDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHV 237 (534)
Q Consensus 158 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 237 (534)
.+|.+|.||||+|+..|+.+++++|++.|+++. ..|..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD-VNARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC-TTCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC-CcccCCCCCCHHHH
Confidence 467889999999999999999999999999865 6789999999999999999999999999998 89999999999999
Q ss_pred HHhcCCHHHHHHHHhCCcccccccccCCCCCcH
Q 039300 238 AAKHGNWNIVSFILKSPEMENLINLIDRNGNTS 270 (534)
Q Consensus 238 A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~ 270 (534)
|+..++.+++++|+++|++ +|.++..|.||
T Consensus 82 A~~~~~~~~~~~Ll~~ga~---~n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGAD---VNARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSS---HHHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCC---CCcCCcccccc
Confidence 9999999999999999987 89999999987
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.71 E-value=2.6e-17 Score=133.24 Aligned_cols=87 Identities=29% Similarity=0.331 Sum_probs=77.1
Q ss_pred CCCCHHHHHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccCCCCCcHhHHHHHhCcHHHHHHHHHcCCCCCcCCcc
Q 039300 1 MDETPLHIAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRDIEGNTPLHNVVTKKHKRVIRILVEKDSAPSSYINK 80 (534)
Q Consensus 1 ~G~T~Lh~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~~~~~~~~~ 80 (534)
.|+||||+||..|+.+++++|+++|++++ .+|..|.||||+|+..|+.+++++|+++|+++. ..|.
T Consensus 23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-------------~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~ 88 (110)
T 2zgd_A 23 DLGKKLLEAARAGQDDEVRILMANGADVA-------------AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDK 88 (110)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCTT-------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCCC-------------ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-cccc
Confidence 36789999999999999999999988877 478899999999999999999999999998875 6788
Q ss_pred CCCcHHHHHHHcCcHHHHHHH
Q 039300 81 AYQTPLSIAIDVRLNDIACFI 101 (534)
Q Consensus 81 ~g~tpL~~A~~~g~~~iv~~L 101 (534)
.|.||||+|+..|+.+++++|
T Consensus 89 ~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 89 FGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp TSCCHHHHHHHHTCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHh
Confidence 899999999999999999876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.68 E-value=9.5e-17 Score=129.95 Aligned_cols=90 Identities=21% Similarity=0.340 Sum_probs=62.1
Q ss_pred cCCCCCcHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHH
Q 039300 193 RDCNGATPLHLAAENGELKVLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLH 272 (534)
Q Consensus 193 ~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh 272 (534)
.|.+|.||||.|+..|+.++++.|++.+++ ++.+|..|+||||+|+..|+.+++++|++.+++ ++.+|..|+||||
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGAD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAFD 95 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccccCCCcHHH
Confidence 455666777777777777777777776666 666677777777777777777777777777655 6667777777777
Q ss_pred HHHhcCChhHHHHh
Q 039300 273 LAAMGLHSDVVFTL 286 (534)
Q Consensus 273 ~A~~~~~~~~v~~L 286 (534)
+|+..++.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 77777777776655
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=61.32 E-value=13 Score=35.34 Aligned_cols=190 Identities=7% Similarity=0.040 Sum_probs=86.0
Q ss_pred ccCCCCCcHhHHHHHhCcHHHHHHHHHc--CCCCCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCC--cccCCCCCCc
Q 039300 43 MRDIEGNTPLHNVVTKKHKRVIRILVEK--DSAPSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSES--LNATRLPDEL 118 (534)
Q Consensus 43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~--g~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~~g~ 118 (534)
..|..|+..+.-....++.+....+++. |.-..-..+..|.-.+..+......+-...+++.-... .-..|. .|.
T Consensus 68 ~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~-~Gn 146 (351)
T 3gvo_A 68 MTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQ-NGN 146 (351)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHST-THH
T ss_pred HhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhh-hhh
Confidence 3677777777777777777766666654 21111123555656666666555554444444322110 011222 555
Q ss_pred hHHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHH----HHHHHHhhchhhhcccC
Q 039300 119 TLLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQ----MVQRLLEASKQLAYKRD 194 (534)
Q Consensus 119 t~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~----~v~~Ll~~~~~~~~~~~ 194 (534)
..+..+......+. .+.+++.+...- ..-..+..|...+..+......+ +++.|...-. ....|
T Consensus 147 ~ViQk~l~~~~~~~---------~~~i~~~~~~~~-~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~--~L~~d 214 (351)
T 3gvo_A 147 HVVQKCIECVQPQS---------LQFIIDAFKGQV-FVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTE--QLVQD 214 (351)
T ss_dssp HHHHHHHHHSCGGG---------THHHHHHTTTTH-HHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHH--HHHTS
T ss_pred HHHHHHHHhCCHHH---------HHHHHHHHHHHH-HHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHH--hcCCC
Confidence 55555555444443 333344332110 01112233333333333333322 2233322211 12356
Q ss_pred CCCCcHHHHHHHcCcHHHHHHHHHhCCCc--cccccCCCCcHHHHHHhcCCHH
Q 039300 195 CNGATPLHLAAENGELKVLKLLINKYPDA--IEIRDNSDRSILHVAAKHGNWN 245 (534)
Q Consensus 195 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~--~~~~d~~g~t~Lh~A~~~~~~~ 245 (534)
..|.-.+......+..+..+.+++.-... .-..++.|...+..+...+..+
T Consensus 215 ~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~ 267 (351)
T 3gvo_A 215 QYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRA 267 (351)
T ss_dssp TTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHH
T ss_pred chHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHH
Confidence 66666666666666555555554432211 1123445555555555555443
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=46.31 E-value=15 Score=34.87 Aligned_cols=225 Identities=12% Similarity=0.042 Sum_probs=114.9
Q ss_pred cCCCCCcHhHHHHHhCcHHHHHHHHHcC-CC-CCcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCC-c-ccCCCCCCch
Q 039300 44 RDIEGNTPLHNVVTKKHKRVIRILVEKD-SA-PSSYINKAYQTPLSIAIDVRLNDIACFIIDKSSES-L-NATRLPDELT 119 (534)
Q Consensus 44 ~d~~g~TpLh~A~~~g~~e~v~~Ll~~g-~~-~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~-~-~~~~~~~g~t 119 (534)
.|..|.-.|......++.+-.+.+.+.- +. ..-..|..|...+.-....++.+....+++.-... . -..+. .|..
T Consensus 33 ~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~-~G~r 111 (351)
T 3gvo_A 33 QDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQM-YGCR 111 (351)
T ss_dssp TSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTST-THHH
T ss_pred cCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCH-HhHH
Confidence 5556666677777777666555554431 11 11134667777777777777777666666543221 1 11222 5666
Q ss_pred HHHHHHHhcCcchhhhhhhHHHHHHHHHHhCCChhhhhcccCCCCcHHHHHHhCCCHHHHHHHHhhch--hhhcccCCCC
Q 039300 120 LLHFFVMRQNYDLSKSMQFLQFIDIMVKILGTNKDLINRLDWHQRNPLHYAAASGNVQMVQRLLEASK--QLAYKRDCNG 197 (534)
Q Consensus 120 ~L~~A~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~~~g 197 (534)
.+..+......+. ...+++.+... ...-..|..|+..+......+..+..+.+++.-. -.....+..|
T Consensus 112 vvQk~le~~~~~~---------~~~i~~el~~~-~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G 181 (351)
T 3gvo_A 112 VIQKALESISSDQ---------QSEMVKELDGH-VLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYG 181 (351)
T ss_dssp HHHHHHHHSCHHH---------HHHHHGGGTTC-HHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTH
T ss_pred HHHHHHHhCCHHH---------HHHHHHHhhhh-HHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHh
Confidence 6666665554432 23333332211 1122345566666555555444433333333211 1111234455
Q ss_pred CcHHHHHHHcCcHH----HHHHHHHhCCCccccccCCCCcHHHHHHhcCCHHHHHHHHhCCcccccccccCCCCCcHHHH
Q 039300 198 ATPLHLAAENGELK----VLKLLINKYPDAIEIRDNSDRSILHVAAKHGNWNIVSFILKSPEMENLINLIDRNGNTSLHL 273 (534)
Q Consensus 198 ~tpL~~A~~~g~~~----~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~~~~~Ll~~~~~~~~~~~~d~~g~t~Lh~ 273 (534)
...+..+.+....+ +++.|..... .-..|..|+-.+......+..+..+.+++.-.....--..++.|...+..
T Consensus 182 ~~Vvq~~le~~~~~~~~~ii~~l~~~~~--~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek 259 (351)
T 3gvo_A 182 CRVIQRILEHCTAEQTLPILEELHQHTE--QLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 259 (351)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTHH--HHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHhhhHH--hcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 55555554444333 3333332111 23467788888888888888777777766532211122356667666666
Q ss_pred HHhcCChh
Q 039300 274 AAMGLHSD 281 (534)
Q Consensus 274 A~~~~~~~ 281 (534)
+...+..+
T Consensus 260 ~l~~~~~~ 267 (351)
T 3gvo_A 260 CVTHASRA 267 (351)
T ss_dssp HHHHSCHH
T ss_pred HHHhCCHH
Confidence 66666554
No 117
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=43.32 E-value=41 Score=32.11 Aligned_cols=89 Identities=11% Similarity=0.007 Sum_probs=48.2
Q ss_pred ccCCCCCcHhHHHHHhCcHHHHHHHHHcCC-CC-CcCCccCCCcHHHHHHHcCcHHHHHHHHhcCCCC-c-ccCCCCCCc
Q 039300 43 MRDIEGNTPLHNVVTKKHKRVIRILVEKDS-AP-SSYINKAYQTPLSIAIDVRLNDIACFIIDKSSES-L-NATRLPDEL 118 (534)
Q Consensus 43 ~~d~~g~TpLh~A~~~g~~e~v~~Ll~~g~-~~-~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~-~-~~~~~~~g~ 118 (534)
.+|..|+..+.-....+..+..+.+++.-. .. .-..+..|.-.+..+......+-...+++.-... . -..|. .|.
T Consensus 73 ~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~-~Gn 151 (369)
T 3k49_A 73 SNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQ-NGN 151 (369)
T ss_dssp HHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHST-THH
T ss_pred hhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCc-ccc
Confidence 478889988888888888877777766511 11 1123455555556565555544444444322110 0 11222 565
Q ss_pred hHHHHHHHhcCcch
Q 039300 119 TLLHFFVMRQNYDL 132 (534)
Q Consensus 119 t~L~~A~~~~~~~~ 132 (534)
..+......+..+.
T Consensus 152 ~ViQ~~l~~~~~~~ 165 (369)
T 3k49_A 152 HVIQKAIETIPIEK 165 (369)
T ss_dssp HHHHHHHHHSCGGG
T ss_pred hHHHHHHHhCCHHH
Confidence 66666655554443
No 118
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=33.46 E-value=31 Score=20.48 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.0
Q ss_pred HHHHHhcCCHHHHHHHHhc
Q 039300 6 LHIAARIGDHAIVSEIMKY 24 (534)
Q Consensus 6 Lh~Aa~~g~~~~v~~Ll~~ 24 (534)
+..||..|+.+.++.|-..
T Consensus 17 iyvA~seGd~etv~~Le~Q 35 (40)
T 1gp8_A 17 MDAAASKGDVETYRKLKAK 35 (40)
T ss_dssp HHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHH
Confidence 5789999999999988643
No 119
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=33.06 E-value=1e+02 Score=29.53 Aligned_cols=61 Identities=16% Similarity=0.140 Sum_probs=37.9
Q ss_pred HHHhcCCHHHHHHHHhcCccccccCchhhhhhhhcccC--CCCCcHhHHHHHhCcHHHHHHHHH
Q 039300 8 IAARIGDHAIVSEIMKYVPAVNQAGSASVLETLFGMRD--IEGNTPLHNVVTKKHKRVIRILVE 69 (534)
Q Consensus 8 ~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~l~~~d--~~g~TpLh~A~~~g~~e~v~~Ll~ 69 (534)
..+..|+...|+..+..|.+++..-.. ..-.+|+..+ .-|.|.+|+|++..+-+++..|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~-~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTA-DEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCH-HHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCH-HHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 345689999999999999887642110 1122333333 236677777777777777666665
No 120
>2om2_B Regulator of G-protein signalling 14 goloco motif peptide; arginine finger, RGS14 goloco, signaling protein; HET: GDP; 2.20A {Homo sapiens} PDB: 1kjy_B* 3onw_C* 3qi2_C*
Probab=20.68 E-value=38 Score=19.88 Aligned_cols=20 Identities=10% Similarity=-0.154 Sum_probs=17.4
Q ss_pred hhhhhhhhhhhhcCcceeee
Q 039300 512 LIYFHHLSTFRESKMSVWQV 531 (534)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~ 531 (534)
.-+|+.|++|..+-|+-|.-
T Consensus 3 e~ffdLLSR~Qs~R~dDQR~ 22 (36)
T 2om2_B 3 EGLVELLNRVQSSGAHDQRG 22 (36)
T ss_dssp HHHHHHHHHHHTCSCCSCSS
T ss_pred hHHHHHHHHhccCccccccc
Confidence 56899999999999998854
Done!