BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039302
(479 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 149 bits (377), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 147/304 (48%), Gaps = 31/304 (10%)
Query: 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQS 224
K+ H+G VNR R M QNP I A+ + V V+D+ H + S +
Sbjct: 120 KINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGEC-----------N 168
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN--VDPNP-FIGHAA 281
P ++ GH+ EGY + WNP G L+S + I LW+ ++ VD F GH A
Sbjct: 169 PDLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTA 228
Query: 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL--MSFKAHNADVNVISWNRLASCL 339
VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N + +
Sbjct: 229 VVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFI 288
Query: 340 LASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399
LA+GS D T ++ DLR LK + FE HK + ++WSPH + LA S D +L +W
Sbjct: 289 LATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
Query: 400 DLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTA 458
DLS + ED PP+LLFIH G + + W+ P +I S +
Sbjct: 346 DLS-----------KIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 394
Query: 459 ADGF 462
D
Sbjct: 395 EDNI 398
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETV--AGHGAPQVLNQS 224
+H+ + +++ N I AS + VWD L+ + E ++ A G P++L
Sbjct: 315 SHKDEIFQVQWSPHNETILASSGTDRRLNVWD----LSKIGEEQSPEDAEDGPPELL--- 367
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDP 273
GGH + WNP P + S ++ + +W+ A + + DP
Sbjct: 368 --FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDP 414
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 146/305 (47%), Gaps = 33/305 (10%)
Query: 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQS 224
K+ H+G VNR R M QN + A+ + V V+D+ H + S G Q
Sbjct: 126 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS------GECQ----- 174
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE----PASDATWNVDPNPFIGHA 280
P ++ GH+ EGY + WNP G L+S + I LW+ P + N F GH
Sbjct: 175 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA-KNIFTGHT 233
Query: 281 ASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHNADVNVISWNRLASC 338
A VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N +
Sbjct: 234 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 293
Query: 339 LLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398
+LA+GS D T ++ DLR LK + FE HK + ++WSPH + LA S D +L +
Sbjct: 294 ILATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 350
Query: 399 WDLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVST 457
WDLS + ED PP+LLFIH G + + W+ P +I S
Sbjct: 351 WDLS-----------KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 399
Query: 458 AADGF 462
+ D
Sbjct: 400 SEDNI 404
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETV--AGHGAPQVLNQS 224
+H+ + +++ N I AS + VWD L+ + E ++ A G P++L
Sbjct: 321 SHKDEIFQVQWSPHNETILASSGTDRRLHVWD----LSKIGEEQSTEDAEDGPPELL--- 373
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDP 273
GGH + WNP P + S ++ + +W+ A + + +P
Sbjct: 374 --FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEP 420
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 147 bits (371), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 146/305 (47%), Gaps = 33/305 (10%)
Query: 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQS 224
K+ H+G VNR R M QN + A+ + V V+D+ H + S G Q
Sbjct: 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS------GECQ----- 172
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE----PASDATWNVDPNPFIGHA 280
P ++ GH+ EGY + WNP G L+S + I LW+ P + N F GH
Sbjct: 173 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA-KNIFTGHT 231
Query: 281 ASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHNADVNVISWNRLASC 338
A VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N +
Sbjct: 232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 291
Query: 339 LLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398
+LA+GS D T ++ DLR LK + FE HK + ++WSPH + LA S D +L +
Sbjct: 292 ILATGSADKTVALWDLRNLKLK---LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 348
Query: 399 WDLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVST 457
WDLS + ED PP+LLFIH G + + W+ P +I S
Sbjct: 349 WDLS-----------KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 397
Query: 458 AADGF 462
+ D
Sbjct: 398 SEDNI 402
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETV--AGHGAPQVLNQS 224
+H+ + +++ N I AS + VWD L+ + E ++ A G P++L
Sbjct: 319 SHKDEIFQVQWSPHNETILASSGTDRRLHVWD----LSKIGEEQSTEDAEDGPPELL--- 371
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDP 273
GGH + WNP P + S ++ + +W+ A + + +P
Sbjct: 372 --FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEP 418
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 101/304 (33%), Positives = 145/304 (47%), Gaps = 31/304 (10%)
Query: 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQS 224
K+ H+G VNR R M QNPHI A+ + V V+D+ H S +
Sbjct: 122 KINHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGEC-----------N 170
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN--VDPNP-FIGHAA 281
P ++ GH+ EGY + WN G L+S + + LW+ + VD F GH+A
Sbjct: 171 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA 230
Query: 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHNADVNVISWNRLASCL 339
VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N + +
Sbjct: 231 VVEDVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 290
Query: 340 LASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399
LA+GS D T ++ DLR LK + FE HK + + WSPH + LA S D +L +W
Sbjct: 291 LATGSADKTVALWDLRNLKLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 400 DLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTA 458
DLS + ED PP+LLFIH G + + W+ P +I S +
Sbjct: 348 DLS-----------KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 396
Query: 459 ADGF 462
D
Sbjct: 397 EDNI 400
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 11/102 (10%)
Query: 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETV--AGHGAPQVLNQS 224
+H+ + ++ N I AS + VWD L+ + E ++ A G P++L
Sbjct: 317 SHKDEIFQVHWSPHNETILASSGTDRRLNVWD----LSKIGEEQSAEDAEDGPPELL--- 369
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASD 266
GGH + WNP P + S ++ + +W+ A +
Sbjct: 370 --FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 146/305 (47%), Gaps = 33/305 (10%)
Query: 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQS 224
K+ H+G VNR R M QN + A+ + V V+D+ H + S G Q
Sbjct: 128 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPS------GECQ----- 176
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE----PASDATWNVDPNPFIGHA 280
P ++ GH+ EGY + WNP G L+S + I LW+ P + N F GH
Sbjct: 177 PDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDA-KNIFTGHT 235
Query: 281 ASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHNADVNVISWNRLASC 338
A VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N +
Sbjct: 236 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEF 295
Query: 339 LLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398
+LA+GS D T ++ DLR LK + FE HK + ++WSPH + LA S D +L +
Sbjct: 296 ILATGSADKTVALWDLRNLK---LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHV 352
Query: 399 WDLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVST 457
WDLS + ED PP+LLFIH G + + W+ P +I S
Sbjct: 353 WDLS-----------KIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSV 401
Query: 458 AADGF 462
+ D
Sbjct: 402 SEDNI 406
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETV--AGHGAPQVLNQS 224
+H+ + +++ N I AS + VWD L+ + E ++ A G P++L
Sbjct: 323 SHKDEIFQVQWSPHNETILASSGTDRRLHVWD----LSKIGEEQSTEDAEDGPPELL--- 375
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDP 273
GGH + WNP P + S ++ + +W+ A + + +P
Sbjct: 376 --FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYNDEEP 422
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 144 bits (364), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 100/304 (32%), Positives = 144/304 (47%), Gaps = 31/304 (10%)
Query: 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQS 224
K+ H+G VNR R QNPHI A+ + V V+D+ H S +
Sbjct: 122 KINHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGEC-----------N 170
Query: 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN--VDPNP-FIGHAA 281
P ++ GH+ EGY + WN G L+S + + LW+ + VD F GH+A
Sbjct: 171 PDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSA 230
Query: 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHNADVNVISWNRLASCL 339
VED+ W +F S + D + IWDTR ++ S AH A+VN +S+N + +
Sbjct: 231 VVEDVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFI 290
Query: 340 LASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399
LA+GS D T ++ DLR LK + FE HK + + WSPH + LA S D +L +W
Sbjct: 291 LATGSADKTVALWDLRNLKLK---LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 400 DLSLXXXXXXXXXXXXXTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTA 458
DLS + ED PP+LLFIH G + + W+ P +I S +
Sbjct: 348 DLS-----------KIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVS 396
Query: 459 ADGF 462
D
Sbjct: 397 EDNI 400
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 62/217 (28%), Positives = 96/217 (44%), Gaps = 29/217 (13%)
Query: 189 ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG- 247
+D+G V++W+ L E+ET+ + KF ++ + + ++ G
Sbjct: 100 SDSGAVELWE-------LDENETLI------------VSKFCKYEHDDIVSTVSVLSSGT 140
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI 307
+ VSG + CI +W D V + + HAA V + SP + VF SCS D I +
Sbjct: 141 QAVSGSKDICIKVW----DLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILL 196
Query: 308 WDTRVGKSA-LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH 366
WDTR K A + A ++W+ S + G ++GT S+ D + S V
Sbjct: 197 WDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTK----STSCVLS 252
Query: 367 FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403
H VT + +SPH LA S D L + D SL
Sbjct: 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL 289
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/173 (24%), Positives = 78/173 (45%), Gaps = 13/173 (7%)
Query: 238 AIDWNPVAPGRLVSGDCNSCIHLWE---PASDATWNVDPNPFIG------HAASVEDLQW 288
+D PV ++SG + I L++ + + + IG H SVE +QW
Sbjct: 48 TLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW 107
Query: 289 SPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGT 348
P ++ +F S S D + +WDT ++A + + +S CL+A G+
Sbjct: 108 YPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPK 167
Query: 349 FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
+ DL+ S + H+ + ++ WSP LA +SAD+++ +WD+
Sbjct: 168 VQLCDLK----SGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDV 216
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 9/89 (10%)
Query: 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR--------LLKGGDSV-VAHFEYHK 371
+ H +N + + + SG DG ++DL K S+ H + H+
Sbjct: 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99
Query: 372 HPVTSIEWSPHEGSTLAVSSADNQLTIWD 400
+ V +++W PH+ SS D L +WD
Sbjct: 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWD 128
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325
GH + + WSP + A+ S D + +WD R L++ HN
Sbjct: 184 GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNG 231
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 2/126 (1%)
Query: 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF-IGHAASVEDLQWS 289
GHK + + P RL++G + LW+ + ++ + F GH A V L +
Sbjct: 155 GHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214
Query: 290 PTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTF 349
+++F S S D + +WD R+ A+ ++ H D+N + + +GSDDGT
Sbjct: 215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQ-RFGTGSDDGTC 273
Query: 350 SIHDLR 355
+ D+R
Sbjct: 274 RLFDMR 279
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLAS 337
GH+ V L W+P E + S S DG + +W+ AL S K H ++ W +
Sbjct: 64 GHSGKVYSLDWTP-EKNWIVSASQDGRLIVWN------ALTSQKTHAIKLHC-PW--VME 113
Query: 338 CL-------LASGSDDGTFSIHDLRLLKGGDS---VVAHFEYHKHPVTSIEWSPHEGSTL 387
C +A G D SI +L D V HK +S ++ P + + L
Sbjct: 114 CAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRL 173
Query: 388 AVSSADNQLTIWDLS 402
S D +WD++
Sbjct: 174 ITGSGDQTCVLWDVT 188
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 21/159 (13%)
Query: 255 NSCIHLWEPASDAT---WNVDP----NPFIGHAASVEDLQWSPTES-DVFASCSVDGNIA 306
NS + + + D T W+V+ F GH A V L +P+E+ + F S D
Sbjct: 164 NSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAM 223
Query: 307 IWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH 366
+WD R G+ + +F+ H +DVN + + ASGSDD T ++DLR D VA
Sbjct: 224 VWDMRSGQ-CVQAFETHESDVNSVRYYPSGD-AFASGSDDATCRLYDLR----ADREVAI 277
Query: 367 FEYHKHPV----TSIEWSPHEGSTLAVSSADNQLTIWDL 401
Y K + +S+++S G L D + +WD+
Sbjct: 278 --YSKESIIFGASSVDFSL-SGRLLFAGYNDYTINVWDV 313
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 156
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 157 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 211
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 212 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 244
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 122 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 176
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 177 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 234
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 288
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 158
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 159 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 213
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 214 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 246
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 124 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 178
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 179 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 236
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 290
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 33/230 (14%)
Query: 174 RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK 233
R+ ++S N +I +S + +GH+ D R VA H + GH
Sbjct: 202 RVGSLSWNSYILSSGSRSGHIHHHDVR-----------VAEH---------HVATLSGHS 241
Query: 234 DEGYAIDWNPVAPGR-LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE 292
E + W P GR L SG ++ +++W A V F H +V+ + W P +
Sbjct: 242 QEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 293 SDVFAS--CSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFS 350
S+V A+ + D +I IW+ G + L + AH + V I W+ L++ F+
Sbjct: 300 SNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAH-SQVCSILWSPHYKELISGHG----FA 353
Query: 351 IHDLRLLKGGD-SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399
+ L + K + VA + H V S+ SP +G+T+A ++AD L +W
Sbjct: 354 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLW 402
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 33/230 (14%)
Query: 174 RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK 233
R+ ++S N +I +S + +GH+ D R VA H + GH
Sbjct: 191 RVGSLSWNSYILSSGSRSGHIHHHDVR-----------VAEH---------HVATLSGHS 230
Query: 234 DEGYAIDWNPVAPGR-LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE 292
E + W P GR L SG ++ +++W A V F H +V+ + W P +
Sbjct: 231 QEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 293 SDVFAS--CSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFS 350
S+V A+ + D +I IW+ G + L + AH + V I W+ L++ F+
Sbjct: 289 SNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAH-SQVCSILWSPHYKELISGHG----FA 342
Query: 351 IHDLRLLKGGD-SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399
+ L + K + VA + H V S+ SP +G+T+A ++AD L +W
Sbjct: 343 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLW 391
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 140
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 141 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 195
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 196 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 228
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 160
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 161 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 218
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 272
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 151
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 152 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 206
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 207 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 239
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 117 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 171
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 172 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 229
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 230 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 283
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 268 TWNVDPN-PFI-GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG------KSALMS 319
T VD N P + GH A V D+ W P +V AS S D + +W+ G + +++
Sbjct: 67 TGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379
+ H V +++W+ A +L S D + D+ G + + H + S++W
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVG--TGAAVLTLGPDVHPDTIYSVDW 184
Query: 380 SPHEGSTLAVSSADNQLTI 398
S +G+ + S D ++ +
Sbjct: 185 S-RDGALICTSCRDKRVRV 202
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 322 AHNADVNVISWNRLASCLLASGSDDGTF---SIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378
H A V I+W ++ASGS+D T I D L+ V E H V +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 379 WSPHEGSTLAVSSADNQLTIWDL 401
W P + L + DN + +WD+
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDV 161
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 339 LLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398
L+ S G F + L D V H PV I W PH + +A S D + +
Sbjct: 49 LIXEASGGGAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMV 108
Query: 399 WDL 401
W++
Sbjct: 109 WEI 111
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Query: 223 QSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASD-ATWNVDPNPFIGHAA 281
+ P++ GH + W+P A L+S ++ I +W+ + A + P+ H
Sbjct: 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDV---HPD 177
Query: 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325
++ + WS + + SC D + + + R G + H
Sbjct: 178 TIYSVDWSRDGALICTSCR-DKRVRVIEPRKGTVVAEKDRPHEG 220
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 140
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 141 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 195
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 196 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 228
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 160
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 161 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 218
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 272
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 135
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 136 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 190
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 191 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 223
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 101 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 155
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 156 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 213
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 214 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 267
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 134
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 135 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 189
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 190 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 222
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 100 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 154
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 155 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 212
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 266
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 137
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 138 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 192
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 193 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 225
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP +VSG + + +W+ + P H+ V
Sbjct: 103 LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 157
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 158 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 215
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 269
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 137
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 138 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 192
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 193 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 225
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP +VSG + + +W+ + P H+ V
Sbjct: 103 LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 157
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 158 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 215
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 269
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 130
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 131 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 185
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 186 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 218
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 96 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 150
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 151 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 208
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 209 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 262
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 134
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 135 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 189
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 190 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 222
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 100 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 154
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 155 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 212
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 266
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 139
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 140 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 194
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 195 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 227
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 105 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 159
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 160 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 217
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 271
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 133
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 134 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 188
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 189 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 221
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 99 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 153
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 154 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 211
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 212 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 265
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 140
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 141 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 195
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 196 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 228
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 106 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 160
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 161 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 218
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 272
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 137
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + GK L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 138 DVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 192
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 193 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 225
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP +VSG + + +W+ + P H+ V
Sbjct: 103 LKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLP----AHSDPVSA 157
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 158 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 215
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNLVYIWNL 269
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 11/139 (7%)
Query: 268 TWNVDPN-PFI-GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG------KSALMS 319
T VD N P + GH A V D+ W P +V AS S D + +W+ G + +++
Sbjct: 67 TGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVIT 126
Query: 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379
+ H V +++W+ A +L S D + D+ G + + H + S++W
Sbjct: 127 LEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVG--TGAAVLTLGPDVHPDTIYSVDW 184
Query: 380 SPHEGSTLAVSSADNQLTI 398
S +G+ + S D ++ +
Sbjct: 185 S-RDGALICTSCRDKRVRV 202
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 8/111 (7%)
Query: 299 CSVDGNIAIWDTRVGKSALMS-----FKAHNADVNVISWNRLASCLLASGSDDGTF---S 350
C G A +GK+ + H A V I+W ++ASGS+D T
Sbjct: 51 CEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE 110
Query: 351 IHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
I D L+ V E H V + W P + L + DN + +WD+
Sbjct: 111 IPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV 161
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 223 QSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASD-ATWNVDPNPFIGHAA 281
+ P++ GH + W+P A L+S C++ I +W+ + A + P+ H
Sbjct: 121 REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV---HPD 177
Query: 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325
++ + WS + + SC D + + + R G + H
Sbjct: 178 TIYSVDWSRDGALICTSCR-DKRVRVIEPRKGTVVAEKDRPHEG 220
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 26/63 (41%)
Query: 339 LLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398
L+ S G F + L D V H PV I W PH + +A S D + +
Sbjct: 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108
Query: 399 WDL 401
W++
Sbjct: 109 WEI 111
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 104/230 (45%), Gaps = 33/230 (14%)
Query: 174 RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK 233
R+ ++S N +I +S + +GH+ D R VA H + GH
Sbjct: 111 RVGSLSWNSYILSSGSRSGHIHHHDVR-----------VAEH---------HVATLSGHS 150
Query: 234 DEGYAIDWNPVAPGR-LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE 292
E + W P GR L SG ++ +++W A V F H +V+ + W P +
Sbjct: 151 QEVCGLRWAP--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 293 SDVFAS--CSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFS 350
S+V A+ + D +I IW+ G + L + AH + V I W+ L++ F+
Sbjct: 209 SNVLATGGGTSDRHIRIWNVCSG-ACLSAVDAH-SQVCSILWSPHYKELISGHG----FA 262
Query: 351 IHDLRLLKGGD-SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399
+ L + K + VA + H V S+ SP +G+T+A ++AD L +W
Sbjct: 263 QNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 137
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + G L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 138 DVKTGM-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 192
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 193 DDNPPVSFVKFSPN-GKYILAATLDNDLKLWDYS 225
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 73/179 (40%), Gaps = 15/179 (8%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLP----AHSDPVSA 157
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ D
Sbjct: 158 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLD 216
Query: 346 DGTFSIHDLRLLK-GGDSVVAHFEYHKHPVTSI--EWSPHEGSTLAVSSADNQLTIWDL 401
+ DL+L + + HK+ I +S G + S DN + IW+L
Sbjct: 217 N------DLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 11/154 (7%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVS + + +W+ +S GH+ V ++P +S++ S S D ++ IW
Sbjct: 83 LVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIW 137
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + G L + AH+ V+ + +NR S L+ S S DG I D G + +
Sbjct: 138 DVKTGM-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTA---SGQCLKTLID 192
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
PV+ +++SP+ G + ++ DN L +WD S
Sbjct: 193 DDNPPVSFVKFSPN-GKYILAATLDNTLKLWDYS 225
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
L GH + + ++NP + +VSG + + +W+ + P H+ V
Sbjct: 103 LKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGMCLKTLP----AHSDPVSA 157
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ ++ + + S S DG IWDT G+ N V+ + ++ +LA+ +
Sbjct: 158 VHFN-RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAA-TL 215
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
D T + D K + H + K+ + + +S G + S DN + IW+L
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGH-KNEKYCIFA-NFSVTGGKWIVSGSEDNMVYIWNL 269
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 291 TESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISW-NRLASCLLASGSDDGTF 349
++ A+CS D + IWD+ GK + ++ H+ VN + N+ LLA+GS+D
Sbjct: 667 SDDSYIATCSADKKVKIWDSATGK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 725
Query: 350 SIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
+ DL + +++ H + V +SP + LA SAD L +WD+
Sbjct: 726 KLWDLNQKECRNTMFG----HTNSVNHCRFSP-DDELLASCSADGTLRLWDV 772
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 274 NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311
N GH SV ++SP + ++ ASCS DG + +WD R
Sbjct: 737 NTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVR 773
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 7/112 (6%)
Query: 291 TESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISW-NRLASCLLASGSDDGTF 349
++ A+CS D + IWD+ GK + ++ H+ VN + N+ LLA+GS+D
Sbjct: 674 SDDSYIATCSADKKVKIWDSATGK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL 732
Query: 350 SIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
+ DL + +++ H + V +SP + LA SAD L +WD+
Sbjct: 733 KLWDLNQKECRNTMFG----HTNSVNHCRFSP-DDELLASCSADGTLRLWDV 779
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 274 NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311
N GH SV ++SP + ++ ASCS DG + +WD R
Sbjct: 744 NTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVR 780
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT---ESDVFASCSVDGN 304
R SG C++ I LW+ D W + H+ V D+ W+P+ + ASCS DG
Sbjct: 181 RFASGGCDNLIKLWKEEEDGQWK-EEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGR 239
Query: 305 IAIWDTRVGKSALMSFK---AHNADVNVISWNRLASCLLASGSDD 346
+ IW S S K N V +SW+ A+ L SG D+
Sbjct: 240 VFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN 284
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 278 GHAASVEDLQWS-PTESDVFASCSVDGNIAIWDTRVGK-SALMSFKAHNADVNVISWN-R 334
GH V + W+ P ++ ASCS D + IW G H++ VN + W
Sbjct: 55 GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPH 114
Query: 335 LASCLLASGSDDGTFSI 351
+LA GS DG S+
Sbjct: 115 DYGLILACGSSDGAISL 131
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 5/106 (4%)
Query: 296 FASCSVDGNIAIWDTRVGKSALMS-FKAHNADVNVISWNR-LASCLLASGSDDGTFSIHD 353
A+CS D ++ I+D R G L++ + H V ++W + +LAS S D I
Sbjct: 28 LATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII-- 85
Query: 354 LRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-GSTLAVSSADNQLTI 398
R G H V S+ W+PH+ G LA S+D +++
Sbjct: 86 WREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISL 131
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 81/203 (39%), Gaps = 32/203 (15%)
Query: 223 QSPLVKFGGHKDEGYAIDW-NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA 281
Q + GH+ + + W +P+ L S + + +W + TW + GH +
Sbjct: 47 QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWRE-ENGTWE-KSHEHAGHDS 104
Query: 282 SVEDLQWSPTESDVFASC-SVDGNIAIWDTRVGKSALMSFK---AHNADVNVISWNRLAS 337
SV + W+P + + +C S DG I++ T G+ K AH N +SW A
Sbjct: 105 SVNSVCWAPHDYGLILACGSSDGAISL-LTYTGEGQWEVKKINNAHTIGCNAVSW---AP 160
Query: 338 CLLASGSDD---GTFSIHDLRLLKGG-DSVVA--------------HFEYHKHPVTSIEW 379
++ D G + R GG D+++ E H V + W
Sbjct: 161 AVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAW 220
Query: 380 SPHEG---STLAVSSADNQLTIW 399
+P G ST+A S D ++ IW
Sbjct: 221 APSIGLPTSTIASCSQDGRVFIW 243
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 65/167 (38%), Gaps = 19/167 (11%)
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS-PTESDVFASCSVDGNIA 306
RL + + I ++E + +D GH V + W+ P + ASCS DG +
Sbjct: 23 RLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 307 IWDTRVGK-SALMSFKAHNADVNVISWN-RLASCLLASGSDDGTFSIHDLRLLKGGDSVV 364
IW G+ S + H+A VN + W LL S DG S+ + + + G +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK--ENGTTSP 138
Query: 365 AHFEYHKHPVTSIEWSP------------HEGSTLAVSSADNQLTIW 399
+ H V S W+P E ADN + IW
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE--SDVFASCSVDGNI 305
+ V+G ++ + +W+ SDA V + GH+ V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 306 AIW--DTRVG--KSALMSFKAHNADVNVISWNRLASCLLASGSDD 346
IW D G K L+ + + SW+ + L SG D+
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 19/167 (11%)
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS-PTESDVFASCSVDGNIA 306
RL + + I ++E + +D GH V + W+ P + ASCS DG +
Sbjct: 25 RLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 82
Query: 307 IWDTRVGKSALMSFKA-HNADVNVISWN-RLASCLLASGSDDGTFSIHDLRLLKGGDSVV 364
IW G+ + ++ A H+A VN + W LL S DG S+ + + + G +
Sbjct: 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK--ENGTTSP 140
Query: 365 AHFEYHKHPVTSIEWSP------------HEGSTLAVSSADNQLTIW 399
+ H V S W+P E ADN + IW
Sbjct: 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE--SDVFASCSVDGNI 305
+ V+G ++ + +W+ SDA V + GH+ V D+ WSPT AS S D
Sbjct: 174 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233
Query: 306 AIW--DTRVG--KSALMSFKAHNADVNVISWNRLASCLLASGSDD 346
IW D G K L+ + + SW+ + L SG D+
Sbjct: 234 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 278
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/167 (25%), Positives = 67/167 (40%), Gaps = 19/167 (11%)
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS-PTESDVFASCSVDGNIA 306
RL + + I ++E + +D GH V + W+ P + ASCS DG +
Sbjct: 23 RLATCSSDKTIKIFEVEGETHKLIDT--LTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80
Query: 307 IWDTRVGKSALMSFKA-HNADVNVISWN-RLASCLLASGSDDGTFSIHDLRLLKGGDSVV 364
IW G+ + ++ A H+A VN + W LL S DG S+ + + + G +
Sbjct: 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFK--ENGTTSP 138
Query: 365 AHFEYHKHPVTSIEWSP------------HEGSTLAVSSADNQLTIW 399
+ H V S W+P E ADN + IW
Sbjct: 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 185
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE--SDVFASCSVDGNI 305
+ V+G ++ + +W+ SDA V + GH+ V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 306 AIW--DTRVG--KSALMSFKAHNADVNVISWNRLASCLLASGSDD 346
IW D G K L+ + + SW+ + L SG D+
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 291 TESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISW-NRLASCLLASGSDDGTF 349
T+ A+CSVD + IW++ G+ + ++ H+ VN + N LLA+GS D
Sbjct: 673 TDDRFIATCSVDKKVKIWNSMTGE-LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFL 731
Query: 350 SIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400
+ DL + +++ H + V +SP + LA SAD L +WD
Sbjct: 732 KLWDLNQKECRNTMFG----HTNSVNHCRFSP-DDKLLASCSADGTLKLWD 777
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRS----HLNALAESETVAG 214
P+ +LR H GCV R A S + + A+ D G +++W+ + HL A E A
Sbjct: 1125 PLHELR--GHNGCV-RCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAAT 1181
Query: 215 HGA 217
HG
Sbjct: 1182 HGG 1184
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI 307
+ VSG + + +W+ + A + H++ V + P + +F SC DG I +
Sbjct: 153 QAVSGGKDFSVKVWDLSQKAVLK----SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILL 208
Query: 308 WDTRVGKSAL-MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH 366
WDTR K A + F A + ++W+ A G + G S+ +++ + H
Sbjct: 209 WDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVH 268
Query: 367 --------FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
+ YH P + S E T+AV AD DLS
Sbjct: 269 SQNITGLAYSYHSSPFLA---SISEDCTVAVLDADFSEVFRDLS 309
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 19/142 (13%)
Query: 274 NPFIGHAASVEDLQWS-PTESDVFASCSVDGNIAIWDTRVGKSALMSFKA-HNADVNVIS 331
+ GH V + W+ P + ASCS DG + IW G+ + ++ A H+A VN +
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQ 106
Query: 332 W--NRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP-------- 381
W + LL + S DG S+ + + + G + + H V S W+P
Sbjct: 107 WAPHEYGPMLLVASS-DGKVSVVEFK--ENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163
Query: 382 HEGS----TLAVSSADNQLTIW 399
H G+ ADN + IW
Sbjct: 164 HNGTKESRKFVTGGADNLVKIW 185
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE--SDVFASCSVDGNI 305
+ V+G ++ + +W+ SDA V + GH+ V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231
Query: 306 AIW--DTRVG--KSALMSFKAHNADVNVISWNRLASCLLASGSDD 346
IW D G K L+ + + SW+ + L SG D+
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/236 (22%), Positives = 95/236 (40%), Gaps = 34/236 (14%)
Query: 179 SQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238
S N I A D G ++++ NA+ + + +F H
Sbjct: 76 SHNNKIIAGALDNGSLELYSTNEANNAI-----------------NSMARFSNHSSSVKT 118
Query: 239 IDWNPVAPGRLVSGDCNSCIHLW------EPASDATWNVDPNPFIGHAASVEDLQWSPTE 292
+ +N L SG N I +W E S+ T + P + V L W+ +
Sbjct: 119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYT-PLTPGQSMSSVDEVISLAWNQSL 177
Query: 293 SDVFASCSVDGNIAIWDTRVGKSAL-MSFKAHNADV----NVISWNRLASCLL--ASGSD 345
+ VFAS +IWD + K + +S+ + N+ + +V+ W+ S + A+GSD
Sbjct: 178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD 237
Query: 346 -DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400
D + I DLR + + H+ + S++W + L S DN + +W+
Sbjct: 238 NDPSILIWDLR--NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 19/130 (14%)
Query: 285 DLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS---FKAHNADVNVISWNRLASCLLA 341
DL WS + + A +G++ ++ T +A+ S F H++ V + +N +LA
Sbjct: 72 DLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLA 130
Query: 342 SGSDDGTFSIHDLRL----------LKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391
SG ++G I D+ L G S+ + E V S+ W+ A +
Sbjct: 131 SGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE-----VISLAWNQSLAHVFASAG 185
Query: 392 ADNQLTIWDL 401
+ N +IWDL
Sbjct: 186 SSNFASIWDL 195
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 19/142 (13%)
Query: 274 NPFIGHAASVEDLQWS-PTESDVFASCSVDGNIAIWDTRVGKSALMSFKA-HNADVNVIS 331
+ GH V + W+ P + ASCS DG + IW G+ + ++ A H+A VN +
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQ 106
Query: 332 W--NRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP-------- 381
W + LL + S DG S+ + + + G + + H V S W+P
Sbjct: 107 WAPHEYGPXLLVASS-DGKVSVVEFK--ENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163
Query: 382 ----HEGSTLAVSSADNQLTIW 399
E ADN + IW
Sbjct: 164 HNGTKESRKFVTGGADNLVKIW 185
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 47/105 (44%), Gaps = 6/105 (5%)
Query: 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE--SDVFASCSVDGNI 305
+ V+G ++ + +W+ SDA V + GH+ V D+ WSPT AS S D
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTC 231
Query: 306 AIW--DTRVG--KSALMSFKAHNADVNVISWNRLASCLLASGSDD 346
IW D G K L+ + + SW+ + L SG D+
Sbjct: 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDN 276
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 78/188 (41%), Gaps = 20/188 (10%)
Query: 220 VLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH 279
V +Q+ L GH+ + WN L SG + IH + N GH
Sbjct: 163 VESQTKLRTMAGHQARVGCLSWNRHV---LSSGSRSGAIHHHDVR---IANHQIGTLQGH 216
Query: 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA--HNADVNVISWNRLAS 337
++ V L W ++ AS D + IWD R S++ F HNA V ++W S
Sbjct: 217 SSEVCGLAWR-SDGLQLASGGNDNVVQIWDAR---SSIPKFTKTNHNAAVKAVAWCPWQS 272
Query: 338 CLLASGSDDGTFSIHDLRLLKGG--DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS-ADN 394
LLA+G IH G ++V A + VTS+ WSPH ++ DN
Sbjct: 273 NLLATGGGTMDKQIHFWNAATGARVNTVDAGSQ-----VTSLIWSPHSKEIMSTHGFPDN 327
Query: 395 QLTIWDLS 402
L+IW S
Sbjct: 328 NLSIWSYS 335
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 61/138 (44%), Gaps = 16/138 (11%)
Query: 269 WNVDPNPFIGHAAS-----VEDLQWSPTESDVFASCSV-DGNIAIWDTRVGKSALMSFKA 322
WN D A + V ++WS S F S + +G + I+D ++ L +
Sbjct: 118 WNADSGSVSALAETDESTYVASVKWSHDGS--FLSVGLGNGLVDIYDVE-SQTKLRTMAG 174
Query: 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382
H A V +SWNR +L+SGS G HD+R+ + + + H V + W
Sbjct: 175 HQARVGCLSWNR---HVLSSGSRSGAIHHHDVRI---ANHQIGTLQGHSSEVCGLAWRS- 227
Query: 383 EGSTLAVSSADNQLTIWD 400
+G LA DN + IWD
Sbjct: 228 DGLQLASGGNDNVVQIWD 245
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 11/120 (9%)
Query: 286 LQWSPTESDVFASCSVDGNIAIW----DTRVGKSALMSFKAHNADVNVISWNRLASCLLA 341
L W+P + + ASC D I IW D+ + KS L + H V ++W+ + LA
Sbjct: 22 LAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKSVLS--EGHQRTVRKVAWSPCGN-YLA 77
Query: 342 SGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
S S D T I + + V E H++ V S+ W+P G+ LA S D + +W++
Sbjct: 78 SASFDATTCI--WKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEV 134
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 97/276 (35%), Gaps = 53/276 (19%)
Query: 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP 290
GH+ + W+P L S ++ +W+ D V GH V+ + W+P
Sbjct: 59 GHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQDDFECV--TTLEGHENEVKSVAWAP 115
Query: 291 TESDVFASCSVDGNIAIW--DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGT 348
+ ++ A+CS D ++ +W D + +H DV + W+ LLAS S D T
Sbjct: 116 S-GNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASYDDT 173
Query: 349 FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL----- 403
++ R + A E H+ V S+ + P G LA S D + IW L
Sbjct: 174 VKLY--REEEDDWVCCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPGNEQ 230
Query: 404 --------------------------------XXXXXXXXXXXXXTREQVNAPEDLPPQL 431
R P P Q
Sbjct: 231 GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQP 290
Query: 432 LF-----IHQGQ-KDLKELHWHTQVPGMIVSTAADG 461
F +HQ +D+ + W+ + PG++ S + DG
Sbjct: 291 TFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDG 326
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 54/144 (37%), Gaps = 26/144 (18%)
Query: 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV---------------GKSALMSFKA 322
GH ++V L + P+ ASCS D + IW + K
Sbjct: 192 GHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250
Query: 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGD------SVVAHF-EYHKHPVT 375
H+ + I+W +L L + DD +I + D S+ AH + H V
Sbjct: 251 HSRTIYDIAWCQLTGALATACGDD---AIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307
Query: 376 SIEWSPHEGSTLAVSSADNQLTIW 399
+ W+P E LA S D ++ W
Sbjct: 308 CVAWNPKEPGLLASCSDDGEVAFW 331
Score = 32.0 bits (71), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 230 GGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE--PASDA---TWNVDPNPFIGHAASVE 284
G H Y I W + G L + + I +++ P SD T+++ + H+ V
Sbjct: 249 GFHSRTIYDIAWCQLT-GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVN 307
Query: 285 DLQWSPTESDVFASCSVDGNIAIW 308
+ W+P E + ASCS DG +A W
Sbjct: 308 CVAWNPKEPGLLASCSDDGEVAFW 331
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 18/179 (10%)
Query: 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLW--EPASDATWNVDPNPFI-GHAASVEDLQ 287
HK ++ W P L +G +S + +W E ++D T+ +D I GH V+ +
Sbjct: 56 AHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 288 WSPTESDVFASCSVDGNIAIWDTRVG---KSALMSFKAHNADVNVISWNRLASCLLASGS 344
WS + A+CS D ++ IW+T + + H+ DV + W+ + LLAS S
Sbjct: 115 WS-NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSS 172
Query: 345 DDGTFSIHDLRLLKGGD---SVVAHFEYHKHPVTSIEWSPHEGS-TLAVSSADNQLTIW 399
D T +R+ K D VA H+ V S ++ EG L S D+ + +W
Sbjct: 173 YDDT-----VRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 339 LLASGSDDGTFSI-----HDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393
+LA+GS D + D L+ D HK + S+ W PH S LA S D
Sbjct: 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETA-----HKKAIRSVAWRPHT-SLLAAGSFD 79
Query: 394 NQLTIW 399
+ ++IW
Sbjct: 80 STVSIW 85
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF----IGHAASVEDLQWSPTES 293
++ W+P P + G I LW + + P IG S+ L+++P +
Sbjct: 125 SLAWHPTHPSTVAVGSKGGDIMLWN------FGIKDKPTFIKGIGAGGSITGLKFNPLNT 178
Query: 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV--ISWNRLASCLLASGSDDGTFSI 351
+ F + S++G + D K ++ A + +N+ S + AS + D+ +
Sbjct: 179 NQFYASSMEGTTRLQDF---KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN----V 231
Query: 352 HDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
++ LL + + HK VT + +P LA +S D + IWDL
Sbjct: 232 GNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 281
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 279 HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISW--NRLA 336
H V L +P ++ +F S + D + +WD R G +F H +D+N I + N A
Sbjct: 183 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGNA 240
Query: 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK--HPVTSIEWSPHEGSTLAVSSADN 394
A+GSDD T + DLR D + + + +TS+ +S G L D
Sbjct: 241 ---FATGSDDATCRLFDLR----ADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDF 292
Query: 395 QLTIWD 400
+WD
Sbjct: 293 NCNVWD 298
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 28/153 (18%)
Query: 265 SDATWNVDPNPFI---------GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315
S T N+DP I GH A + + W T+S + S S DG + IWD+
Sbjct: 31 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG-TDSRLLLSASQDGKLIIWDS----- 84
Query: 316 ALMSFKAHNADVNVISWNRLASC-------LLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
+ K H + SW + +C +A G D SI++L+ +G V
Sbjct: 85 -YTTNKVHAIPLRS-SW--VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
H ++ + + + + SS D +WD+
Sbjct: 141 GHTGYLSCCRF--LDDNQIVTSSGDTTCALWDI 171
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF----IGHAASVEDLQWSPTES 293
++ W+P P + G I LW + + P IG S+ L+++P +
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWN------FGIKDKPTFIKGIGAGGSITGLKFNPLNT 177
Query: 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV--ISWNRLASCLLASGSDDGTFSI 351
+ F + S++G + D K ++ A + +N+ S + AS + D+ +
Sbjct: 178 NQFYASSMEGTTRLQDF---KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN----V 230
Query: 352 HDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
++ LL + + HK VT + +P LA +S D + IWDL
Sbjct: 231 GNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 279 HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISW--NRLA 336
H V L +P ++ +F S + D + +WD R G +F H +D+N I + N A
Sbjct: 194 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGNA 251
Query: 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK--HPVTSIEWSPHEGSTLAVSSADN 394
A+GSDD T + DLR D + + + +TS+ +S G L D
Sbjct: 252 ---FATGSDDATCRLFDLR----ADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDF 303
Query: 395 QLTIWD 400
+WD
Sbjct: 304 NCNVWD 309
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 28/153 (18%)
Query: 265 SDATWNVDPNPFI---------GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315
S T N+DP I GH A + + W T+S + S S DG + IWD+
Sbjct: 42 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG-TDSRLLVSASQDGKLIIWDS----- 95
Query: 316 ALMSFKAHNADVNVISWNRLASC-------LLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
+ K H + SW + +C +A G D SI++L+ +G V
Sbjct: 96 -YTTNKVHAIPLRS-SW--VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 151
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
H ++ + + + + SS D +WD+
Sbjct: 152 GHTGYLSCCRF--LDDNQIVTSSGDTTCALWDI 182
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 279 HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISW--NRLA 336
H V L +P ++ +F S + D + +WD R G +F H +D+N I + N A
Sbjct: 183 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNA 240
Query: 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK--HPVTSIEWSPHEGSTLAVSSADN 394
A+GSDD T + DLR D + + + +TS+ +S G L D
Sbjct: 241 ---FATGSDDATCRLFDLR----ADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDF 292
Query: 395 QLTIWD 400
+WD
Sbjct: 293 NCNVWD 298
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 28/153 (18%)
Query: 265 SDATWNVDPNPFI---------GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315
S T N+DP I GH A + + W T+S + S S DG + IWD+
Sbjct: 31 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG-TDSRLLVSASQDGKLIIWDS----- 84
Query: 316 ALMSFKAHNADVNVISWNRLASC-------LLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
+ K H + SW + +C +A G D SI++L+ +G V
Sbjct: 85 -YTTNKVHAIPLRS-SW--VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
H ++ + + + + SS D +WD+
Sbjct: 141 GHTGYLSCCRF--LDDNQIVTSSGDTTCALWDI 171
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 279 HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISW--NRLA 336
H V L +P ++ +F S + D + +WD R G +F H +D+N I + N A
Sbjct: 183 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGM-CRQTFTGHESDINAICFFPNGNA 240
Query: 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK--HPVTSIEWSPHEGSTLAVSSADN 394
A+GSDD T + DLR D + + + +TS+ +S G L D
Sbjct: 241 ---FATGSDDATCRLFDLR----ADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDF 292
Query: 395 QLTIWD 400
+WD
Sbjct: 293 NCNVWD 298
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 28/153 (18%)
Query: 265 SDATWNVDPNPFI---------GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315
S T N+DP I GH A + + W T+S + S S DG + IWD+
Sbjct: 31 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG-TDSRLLVSASQDGKLIIWDS----- 84
Query: 316 ALMSFKAHNADVNVISWNRLASC-------LLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
+ K H + SW + +C +A G D SI++L+ +G V
Sbjct: 85 -YTTNKVHAIPLRS-SW--VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
H ++ + + + + SS D +WD+
Sbjct: 141 GHTGYLSCCRF--LDDNQIVTSSGDTTCALWDI 171
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 56/126 (44%), Gaps = 14/126 (11%)
Query: 279 HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISW--NRLA 336
H V L +P ++ +F S + D + +WD R G +F H +D+N I + N A
Sbjct: 183 HTGDVMSLSLAP-DTRLFVSGACDASAKLWDVREGMCR-QTFTGHESDINAICFFPNGNA 240
Query: 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK--HPVTSIEWSPHEGSTLAVSSADN 394
A+GSDD T + DLR D + + + +TS+ +S G L D
Sbjct: 241 ---FATGSDDATCRLFDLR----ADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDF 292
Query: 395 QLTIWD 400
+WD
Sbjct: 293 NCNVWD 298
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 28/153 (18%)
Query: 265 SDATWNVDPNPFI---------GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315
S T N+DP I GH A + + W T+S + S S DG + IWD+
Sbjct: 31 SQITNNIDPVGRIQMRTRRTLRGHLAKIYAMHWG-TDSRLLLSASQDGKLIIWDS----- 84
Query: 316 ALMSFKAHNADVNVISWNRLASC-------LLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
+ K H + SW + +C +A G D SI++L+ +G V
Sbjct: 85 -YTTNKVHAIPLRS-SW--VMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA 140
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
H ++ + + + + SS D +WD+
Sbjct: 141 GHTGYLSCCRF--LDDNQIVTSSGDTTCALWDI 171
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 72/170 (42%), Gaps = 19/170 (11%)
Query: 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF----IGHAASVEDLQWSPTES 293
++ W+P P + G I LW + + P IG S+ L+++P +
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWN------FGIKDKPTFIKGIGAGGSITGLKFNPLNT 177
Query: 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV--ISWNRLASCLLASGSDDGTFSI 351
+ F + S++G + D K ++ A + +N+ S + AS + D+ +
Sbjct: 178 NQFYASSMEGTTRLQDF---KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDN----V 230
Query: 352 HDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
++ LL + + HK VT + +P LA +S D + IWDL
Sbjct: 231 GNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDL 280
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 89/218 (40%), Gaps = 45/218 (20%)
Query: 207 AESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI-DWNPVAPGRLVSGDCNS--CIHLWEP 263
SET G Q +Q + G +D I D N + R+++G S C+ E
Sbjct: 128 CRSETSKGVYCLQYDDQKIV---SGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 184
Query: 264 -----ASDAT---WNVDP----NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311
+SD+T W+V+ N I H +V L+++ + + +CS D +IA+WD
Sbjct: 185 VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN---NGMMVTCSKDRSIAVWDMA 241
Query: 312 VGKSALMS--FKAHNADVNVISWNRLASCLLASGSDDGTFSIHD------LRLLKGGDSV 363
+ H A VNV+ ++ + S S D T + + +R L G
Sbjct: 242 SPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG 298
Query: 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
+A +Y V S S+DN + +WD+
Sbjct: 299 IACLQYRDRLVVS-------------GSSDNTIRLWDI 323
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 238 AIDWNPVAPGRLVSGDCNSCIHLWE-------------PASDATWNVDPNPFIGHAASVE 284
+++W+P P + G I LW+ DA + N F + V
Sbjct: 77 SLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 136
Query: 285 DLQWSPTESD-------VFAS--------CSVDGNIAIWDTRVGKSA------------L 317
++ + T D VFA C VD +++ G S +
Sbjct: 137 SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEI 196
Query: 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI 377
K H A V +N L+A+ S D T + DLR +K +S +A H+ PV +
Sbjct: 197 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAA 255
Query: 378 EWSPHEGSTLAVSSADNQLTIW 399
++P + + L + N++ ++
Sbjct: 256 YFNPTDSTKLLTTDQRNEIRVY 277
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403
VTS+EW P +T+AV S + +WD +
Sbjct: 75 VTSLEWHPTHPTTVAVGSKGGDIILWDYDV 104
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/134 (19%), Positives = 61/134 (45%), Gaps = 11/134 (8%)
Query: 222 NQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA 281
++ L GH + Y++ ++ + +VSG ++ I +W+ + + GH +
Sbjct: 268 TETCLHTLQGHTNRVYSLQFDGI---HVVSGSLDTSIRVWDVETGNC----IHTLTGHQS 320
Query: 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLA 341
++ + ++ S + D + IWD + G+ L + + N + ++ + +
Sbjct: 321 LTSGME---LKDNILVSGNADSTVKIWDIKTGQ-CLQTLQGPNKHQSAVTCLQFNKNFVI 376
Query: 342 SGSDDGTFSIHDLR 355
+ SDDGT + DL+
Sbjct: 377 TSSDDGTVKLWDLK 390
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 7/103 (6%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
LVSG+ +S + +W+ + P H ++V LQ++ + + S DG + +W
Sbjct: 332 LVSGNADSTVKIWDIKTGQCLQTLQGPN-KHQSAVTCLQFNK---NFVITSSDDGTVKLW 387
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLAS---CLLASGSDDGT 348
D + G+ + + W AS + A GS +GT
Sbjct: 388 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGT 430
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/202 (21%), Positives = 77/202 (38%), Gaps = 41/202 (20%)
Query: 238 AIDWNPVAPGRLVSGDCNSCIHLWE-------------PASDATWNVDPNPFIGHAASVE 284
+++W+P P + G I LW+ DA + N F + V
Sbjct: 78 SLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137
Query: 285 DLQWSPTESD-------VFAS--------CSVDGNIAIWDTRVGKSA------------L 317
++ + T D VFA C VD +++ G S +
Sbjct: 138 SIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGHEI 197
Query: 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI 377
K H A V +N L+A+ S D T + DLR +K +S +A H+ PV +
Sbjct: 198 FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP-HEKPVNAA 256
Query: 378 EWSPHEGSTLAVSSADNQLTIW 399
++P + + L + N++ ++
Sbjct: 257 YFNPTDSTKLLTTDQRNEIRVY 278
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403
VTS+EW P +T+AV S + +WD +
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWDYDV 105
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 63/125 (50%), Gaps = 10/125 (8%)
Query: 276 FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRL 335
GH++SV + +SP + AS S D + +W+ R G+ L + H++ V ++++
Sbjct: 463 LTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQ-LLQTLTGHSSSVRGVAFSPD 519
Query: 336 ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395
+ AS SDD T ++L ++ H V + +SP +G T+A +S+D
Sbjct: 520 GQTI-ASASDDKT-----VKLWNRNGQLLQTLTGHSSSVWGVAFSP-DGQTIASASSDKT 572
Query: 396 LTIWD 400
+ +W+
Sbjct: 573 VKLWN 577
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 10/178 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
+V F H D +I +P P ++SG + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASC-LLASGS 344
+ ++P + FAS +D + +W VN + + L + + S
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
DD T I D + S VA E H V+ + P ++ S D L IW+ S
Sbjct: 206 DDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHPTLPIIIS-GSEDGTLKIWNSS 258
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 300 SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359
S D I +++ G+ ++ F+AH + I+ + +L SGSDD T + + +
Sbjct: 74 SDDFRIRVFNYNTGEK-VVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNW---EN 128
Query: 360 GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
++ FE H+H V + ++P + ST A D + +W L
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 10/178 (5%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
+V F H D +I +P P ++SG + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASC-LLASGS 344
+ ++P + FAS +D + +W VN + + L + + S
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
DD T I D + S VA E H V+ + P ++ S D L IW+ S
Sbjct: 206 DDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHPTLPIIIS-GSEDGTLKIWNSS 258
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 300 SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359
S D I +++ G+ ++ F+AH + I+ + +L SGSDD T + + +
Sbjct: 74 SDDFRIRVFNYNTGEK-VVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNW---EN 128
Query: 360 GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
++ FE H+H V + ++P + ST A D + +W L
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 16/181 (8%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
+V F H D +I +P P ++SG + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASC-LLASGS 344
+ ++P + FAS +D + +W VN + + L + + S
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV---SSADNQLTIWDL 401
DD T I D + S VA E H V+ + P TL + S D L IW+
Sbjct: 206 DDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHP----TLPIIISGSEDGTLKIWNS 257
Query: 402 S 402
S
Sbjct: 258 S 258
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 300 SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359
S D I +++ G+ ++ F+AH + I+ + +L SGSDD T + + +
Sbjct: 74 SDDFRIRVFNYNTGEK-VVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNW---EN 128
Query: 360 GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
++ FE H+H V + ++P + ST A D + +W L
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 16/181 (8%)
Query: 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED 285
+V F H D +I +P P ++SG + + LW ++ W ++ F GH V
Sbjct: 90 VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENN--WALE-QTFEGHEHFVMC 145
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASC-LLASGS 344
+ ++P + FAS +D + +W VN + + L + + S
Sbjct: 146 VAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS 205
Query: 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV---SSADNQLTIWDL 401
DD T I D + S VA E H V+ + P TL + S D L IW+
Sbjct: 206 DDLTIKIWDYQT----KSCVATLEGHMSNVSFAVFHP----TLPIIISGSEDGTLKIWNS 257
Query: 402 S 402
S
Sbjct: 258 S 258
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 300 SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359
S D I +++ G+ ++ F+AH + I+ + +L SGSDD T + + +
Sbjct: 74 SDDFRIRVFNYNTGEK-VVDFEAHPDYIRSIAVHPTKPYVL-SGSDDLTVKLWNW---EN 128
Query: 360 GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401
++ FE H+H V + ++P + ST A D + +W L
Sbjct: 129 NWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL 170
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ 287
+F GH+ E Y++ ++P +++S I LW + ++ H+ V ++
Sbjct: 113 RFVGHQSEVYSVAFSP-DNRQILSAGAEREIKLWNILGECKFSSAEKE--NHSDWVSCVR 169
Query: 288 WSPTESDV---------FASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASC 338
+SP FAS DG + +W+T +FKAH ++VN +S +
Sbjct: 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISPNGK- 226
Query: 339 LLASGSDDGTFSIHDL 354
+A+G D I D+
Sbjct: 227 YIATGGKDKKLLIWDI 242
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 88/211 (41%), Gaps = 19/211 (9%)
Query: 195 QVWDFRSHLNALAESETVAG----HGAPQVLNQSPLVKFG--GHKDEGYAIDWNPVAPGR 248
+V + S LN E T G P+ P K+ GH+ + ++PV
Sbjct: 64 KVMELESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVF-SV 122
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308
+VS ++ I +W+ + GH SV+D+ + + + ASCS D I +W
Sbjct: 123 MVSASEDATIKVWDYETGDF----ERTLKGHTDSVQDISFDHS-GKLLASCSADMTIKLW 177
Query: 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
D + G + + H+ +V+ +S ++ S S D T + +++ V F
Sbjct: 178 DFQ-GFECIRTMHGHDHNVSSVSIMPNGDHIV-SASRDKTIKMWEVQT----GYCVKTFT 231
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399
H+ V + +G+ +A S D + +W
Sbjct: 232 GHREWVRMVR-PNQDGTLIASCSNDQTVRVW 261
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLAS 337
GH +V + P D S S D I +W+ + G + +F H V ++ N+ +
Sbjct: 190 GHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTG-YCVKTFTGHREWVRMVRPNQDGT 247
Query: 338 CLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392
L+AS S+D T + + A H+H V I W+P E S ++S A
Sbjct: 248 -LIASCSNDQTVRV----WVVATKECKAELREHRHVVECISWAP-ESSYSSISEA 296
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 77/182 (42%), Gaps = 21/182 (11%)
Query: 229 FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT----WNVDPNPFIGHAASVE 284
FG H +++ +NP G L + + D T + D + H+ SV
Sbjct: 186 FGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF 243
Query: 285 DLQWSPTESDVFASCSVDGNIAIWDT---RVGKSALMSFKAHNADVNVISWNRLASCLLA 341
L WSP + + AS S D I IW+ +V K+ + + + + +I W + A L
Sbjct: 244 GLTWSPDGTKI-ASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII-WTKQA---LV 298
Query: 342 SGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400
S S +G + + L + Y H +T++ S +G TL + A+ + WD
Sbjct: 299 SISANGFINFVNPEL-----GSIDQVRYGHNKAITALS-SSADGKTLFSADAEGHINSWD 352
Query: 401 LS 402
+S
Sbjct: 353 IS 354
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLAS 337
G A ++ + + P+ S S D +AI++ K +F H V+ + +N S
Sbjct: 145 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK-STFGEHTKFVHSVRYNPDGS 203
Query: 338 CLLASGSDDGTFSIHDLRLLKGGDSV-VAHFE-------YHKHPVTSIEWSPHEGSTLAV 389
L AS DGT + L G D FE H V + WSP +G+ +A
Sbjct: 204 -LFASTGGDGT-----IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIAS 256
Query: 390 SSADNQLTIWDLS 402
+SAD + IW+++
Sbjct: 257 ASADKTIKIWNVA 269
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 219 QVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG 278
Q+ ++P K GH +++N L+S + + +W + + N F G
Sbjct: 233 QITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGNS----QNCFYG 287
Query: 279 HAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311
H+ S+ W D SCS+DG++ +W +
Sbjct: 288 HSQSIVSASW--VGDDKVISCSMDGSVRLWSLK 318
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 16/140 (11%)
Query: 222 NQSPLVKFGGHKDEGYAIDWNPVAPG-RLVSGDCNSCIHLWEPASDATWNVDPNPFI--- 277
N+SP+ + + Y + G L+ G S + +W+ A+ P P I
Sbjct: 84 NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA-------PTPRIKAE 136
Query: 278 --GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRL 335
A + L SP +S V SC DGNIA+WD ++ + F+ H + I +
Sbjct: 137 LTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLH-NQTLVRQFQGHTDGASCIDISND 194
Query: 336 ASCLLASGSDDGTFSIHDLR 355
+ L G D+ T DLR
Sbjct: 195 GTKLWTGGLDN-TVRSWDLR 213
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 85/222 (38%), Gaps = 47/222 (21%)
Query: 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV---NVISWNR 334
GH V L+++ + S S D + +WD + G F+ HN+ V +++ +
Sbjct: 160 GHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKG-CCTHVFEGHNSTVRCLDIVEYKN 216
Query: 335 LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT------------------- 375
+ + +GS D T +H +L K SV H E H +P+
Sbjct: 217 IK--YIVTGSRDNT--LHVWKLPKES-SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA 271
Query: 376 SIEWSPHEGSTLAVSSADNQLTIWD---------LSLXXXXXXXXXXXXXTREQVNAPED 426
S+ G+ + S DN L +WD LS + ++A D
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMD 331
Query: 427 LPPQLLFIHQGQKDLKELHWHTQVPGM-------IVSTAADG 461
++ + G+ + L HT + G+ +VS AADG
Sbjct: 332 TTIRIWDLENGEL-MYTLQGHTALVGLLRLSDKFLVSAAADG 372
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 290 PTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTF 349
P + V A+ DG ++IWD R G + KAH A++ + ++ L + S+DG+
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 303 GNIAIWDTRVGK---SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359
G + IWD R S ++S ++ + + ++A+G DG SI D+R
Sbjct: 212 GQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVR---Q 268
Query: 360 GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
G V+ + H+ + + + P L S D L WD S
Sbjct: 269 GTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDAS 311
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/119 (19%), Positives = 48/119 (40%), Gaps = 22/119 (18%)
Query: 192 GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251
G +++WDFR N ++ ++ G P + +D +P + +
Sbjct: 212 GQLKIWDFRQQGNEPSQILSLTGDRVPL-----------------HCVDRHPNQQHVVAT 254
Query: 252 GDCNSCIHLWEPASDATWNVDPNPFI-GHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309
G + + +W D P + H A + ++ + P+ + +CS DG++ WD
Sbjct: 255 GGQDGMLSIW----DVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
+ +SP + AS ++DG I I+D GK L + + H + ++++ S LL + SD
Sbjct: 170 IAYSP-DGKYLASGAIDGIINIFDIATGK-LLHTLEGHAMPIRSLTFSP-DSQLLVTASD 226
Query: 346 DGTFSIHDLR 355
DG I+D++
Sbjct: 227 DGYIKIYDVQ 236
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 16/157 (10%)
Query: 249 LVSGDCNSCIHLW---EPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNI 305
+V+G + + +W + D W+++ GH V + S T + AS S+D +I
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLE-----GHQLGVVSVDISHTLP-IAASSSLDAHI 104
Query: 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA 365
+WD GK + S A D ++++ S LA+G+ G +I + K S+
Sbjct: 105 RLWDLENGKQ-IKSIDAGPVDAWTLAFSP-DSQYLATGTHVGKVNIFGVESGKKEYSLDT 162
Query: 366 HFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
++ + SI +SP +G LA + D + I+D++
Sbjct: 163 RGKF----ILSIAYSP-DGKYLASGAIDGIINIFDIA 194
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 61/147 (41%), Gaps = 30/147 (20%)
Query: 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV---NVISWNR 334
GH V L+++ + S S D + +WD + G F+ HN+ V +++ +
Sbjct: 160 GHDGGVWALKYA--HGGILVSGSTDRTVRVWDIKKG-CCTHVFEGHNSTVRCLDIVEYKN 216
Query: 335 LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT------------------- 375
+ + +GS D T +H +L K SV H E H +P+
Sbjct: 217 IK--YIVTGSRDNT--LHVWKLPKES-SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXA 271
Query: 376 SIEWSPHEGSTLAVSSADNQLTIWDLS 402
S+ G+ + S DN L +WD++
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVA 298
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 269 WNVDPNPFI----GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324
W+++ + GH + L + P+ D S S D + IWD R G+ +L + +
Sbjct: 150 WDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSL-TLSIED 207
Query: 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLR---LLKGGDSVVAHFEYHKHPVTSIEWSP 381
V ++ + +A+GS D + D L++ DS HK V S+ ++
Sbjct: 208 G-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT- 265
Query: 382 HEGSTLAVSSADNQLTIWDL 401
+G ++ S D + +W+L
Sbjct: 266 RDGQSVVSGSLDRSVKLWNL 285
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/106 (24%), Positives = 46/106 (43%), Gaps = 13/106 (12%)
Query: 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES---------DVFASC 299
+ +GD I L++ S V + + + + + W P E D+ A+
Sbjct: 503 IAAGDVXGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 559
Query: 300 SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
S+D NI I+ + + + AH VN + W S L++SG+D
Sbjct: 560 SLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLW-ETPSTLVSSGAD 604
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 16/112 (14%)
Query: 292 ESDVFASCSVDGNIAIWDTRVGKSA----LMSFKAHNADVNVISWNRLASCLLASGSDDG 347
+S FA+ D I +WD K L + N V V++ + + S S DG
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA---TGNGRIISLSLDG 319
Query: 348 TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399
T + ++L G D V+ H +T++ +P L S D ++ W
Sbjct: 320 TLNFYEL----GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIXEW 362
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 26/183 (14%)
Query: 230 GGHKDEGYAIDWNPV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ 287
G H D + ++P AP +VSG ++ + +W+ A+ GH V +
Sbjct: 149 GAHTDWVSCVRFSPSLDAP-VIVSGGWDNLVKVWDLATGRL----VTDLKGHTNYVTSVT 203
Query: 288 WSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISW--NRLASCLLASGSD 345
SP + + AS DG +WD G++ +S A A +N I + NR C +
Sbjct: 204 VSP-DGSLCASSDKDGVARLWDLTKGEA--LSEMAAGAPINQICFSPNRYWMC----AAT 256
Query: 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHP------VTSIEWSPHEGSTLAVSSADNQLTIW 399
+ I DL + D +V H+ SI WS +GSTL DN + +W
Sbjct: 257 EKGIRIFDL---ENKDIIVELAPEHQGSKKIVPECVSIAWSA-DGSTLYSGYTDNVIRVW 312
Query: 400 DLS 402
+S
Sbjct: 313 GVS 315
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 292 ESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD 345
E D+ A+ S+D NI I+ + + + AH VN + W S L++SG+D
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGAD 604
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 16/115 (13%)
Query: 292 ESDVFASCSVDGNIAIWDTRVGKSA----LMSFKAHNADVNVISWNRLASCLLASGSDDG 347
+S FA+ D I +WD K L + N V V++ + + S S DG
Sbjct: 263 DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA---TGNGRIISLSLDG 319
Query: 348 TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
T + ++L G D V+ H +T++ +P L S D ++ W S
Sbjct: 320 TLNFYEL----GHDEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSS 365
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309
+SG + + LW+ + T F+GH V + +S + S S D I +W+
Sbjct: 79 LSGSWDGTLRLWDLTTGTT----TRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTIKLWN 133
Query: 310 TRVGKSALMSFKAHNADVNVISWNRLASC-LLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
T + ++H+ V+ + ++ +S ++ S D + +L K + + H
Sbjct: 134 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 193
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
Y + ++ SP +GS A D Q +WDL+
Sbjct: 194 Y----LNTVTVSP-DGSLCASGGKDGQAMLWDLN 222
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 11/154 (7%)
Query: 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309
+SG + + LW+ + T F+GH V + +S + S S D I +W+
Sbjct: 102 LSGSWDGTLRLWDLTTGTT----TRRFVGHTKDVLSVAFSSDNRQI-VSGSRDKTIKLWN 156
Query: 310 TRVGKSALMSFKAHNADVNVISWNRLASC-LLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368
T + ++H+ V+ + ++ +S ++ S D + +L K + + H
Sbjct: 157 TLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG 216
Query: 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402
Y + ++ SP +GS A D Q +WDL+
Sbjct: 217 Y----LNTVTVSP-DGSLCASGGKDGQAMLWDLN 245
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 272 DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315
+P IGH A+V D+ +V S S+DG I +W+ G +
Sbjct: 173 NPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTT 215
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 272 DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315
+P IGH A+V D+ +V S S+DG I +W+ G +
Sbjct: 170 NPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTT 212
>pdb|2F2F|A Chain A, Crystal Structure Of Cytolethal Distending Toxin (Cdt)
From Actinobacillus Actinomycetemcomitans
pdb|2F2F|D Chain D, Crystal Structure Of Cytolethal Distending Toxin (Cdt)
From Actinobacillus Actinomycetemcomitans
Length = 222
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDP 273
+G + +NPV+P + ++C EP D TW + P
Sbjct: 175 QGRCVTYNPVSPTYYSTVTLSTCDGATEPLRDQTWYLAP 213
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 276 FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALMSFKAHNADVNVISWN 333
++GH ++ +L++ P + ++ S S D + +W+ + + + H +V ++
Sbjct: 147 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 206
Query: 334 RLASCLLASGSDDGTFSIHDLRL 356
L +++ G D H L+L
Sbjct: 207 LLGEKIMSCGMD------HSLKL 223
>pdb|2O8I|A Chain A, Crystal Structure Of Protein Atu2327 From Agrobacterium
Tumefaciens Str. C58
Length = 165
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 305 IAIWDTRVGKSALMSFKAHNADVNVISWNRLASCL 339
++ +DTR+ +A F V I+W RLAS L
Sbjct: 128 LSAFDTRIDNNAAQEFATATGQVEKIAWLRLASXL 162
>pdb|2OIT|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Proto-Oncogene Nup214CAN
Length = 434
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 283 VEDLQWSPTESDVFASCSVDGNIAI 307
V D++W+PT + A C DG+IA+
Sbjct: 152 VIDMKWNPTVPSMVAVCLADGSIAV 176
>pdb|3FMO|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|A Chain A, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|C Chain C, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 450
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 283 VEDLQWSPTESDVFASCSVDGNIAI 307
V D++W+PT + A C DG+IA+
Sbjct: 152 VIDMKWNPTVPSMVAVCLADGSIAV 176
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 276 FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALMSFKAHNADVNVISWN 333
++GH ++ +L++ P + ++ S S D + +W+ + + + H +V ++
Sbjct: 111 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 170
Query: 334 RLASCLLASGSDDGTFSIHDLRL 356
L +++ G D H L+L
Sbjct: 171 LLGEKIMSCGMD------HSLKL 187
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 276 FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALMSFKAHNADVNVISWN 333
++GH ++ +L++ P + ++ S S D + +W+ + + + H +V ++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 334 RLASCLLASGSDDGTFSIHDLRL 356
L +++ G D H L+L
Sbjct: 170 LLGEKIMSCGMD------HSLKL 186
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 276 FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALMSFKAHNADVNVISWN 333
++GH ++ +L++ P + ++ S S D + +W+ + + + H +V ++
Sbjct: 110 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 169
Query: 334 RLASCLLASGSDDGTFSIHDLRL 356
L +++ G D H L+L
Sbjct: 170 LLGEKIMSCGMD------HSLKL 186
>pdb|3FHC|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 405
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 283 VEDLQWSPTESDVFASCSVDGNIAI 307
V D++W+PT + A C DG+IA+
Sbjct: 152 VIDMKWNPTVPSMVAVCLADGSIAV 176
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 8/83 (9%)
Query: 276 FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALMSFKAHNADVNVISWN 333
++GH ++ +L++ P + ++ S S D + +W+ + + + H +V ++
Sbjct: 106 YVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD 165
Query: 334 RLASCLLASGSDDGTFSIHDLRL 356
L +++ G D H L+L
Sbjct: 166 LLGEKIMSCGMD------HSLKL 182
>pdb|2W18|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Human
Palb2
Length = 356
Score = 28.1 bits (61), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 292 ESDVFASCS----VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG 347
E DV C+ G IAIWD +G+ + + + + W+ S LLA D
Sbjct: 290 EGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGN 349
Query: 348 TFSIH 352
F H
Sbjct: 350 IFVYH 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,510,120
Number of Sequences: 62578
Number of extensions: 593724
Number of successful extensions: 1685
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 1270
Number of HSP's gapped (non-prelim): 244
length of query: 479
length of database: 14,973,337
effective HSP length: 103
effective length of query: 376
effective length of database: 8,527,803
effective search space: 3206453928
effective search space used: 3206453928
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)