Query 039302
Match_columns 479
No_of_seqs 740 out of 3925
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 08:24:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039302.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039302hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0302 Ribosome Assembly prot 100.0 6.8E-86 1.5E-90 594.0 33.3 407 33-470 31-440 (440)
2 KOG0264 Nucleosome remodeling 100.0 1.1E-63 2.4E-68 461.6 33.4 382 34-470 16-406 (422)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-41 2.3E-46 312.2 23.8 249 161-467 209-459 (459)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.8E-40 6.1E-45 302.9 21.1 250 163-470 169-420 (459)
5 KOG0271 Notchless-like WD40 re 100.0 2.1E-39 4.5E-44 293.5 25.3 250 164-470 110-441 (480)
6 KOG0277 Peroxisomal targeting 100.0 1.1E-39 2.5E-44 280.7 22.1 259 158-467 49-308 (311)
7 KOG0271 Notchless-like WD40 re 100.0 2.6E-38 5.6E-43 286.5 23.4 245 163-466 194-479 (480)
8 KOG0284 Polyadenylation factor 100.0 3.2E-38 7E-43 288.1 16.6 246 162-466 131-378 (464)
9 KOG0279 G protein beta subunit 100.0 1.6E-36 3.5E-41 264.7 26.2 256 160-470 6-264 (315)
10 KOG0263 Transcription initiati 100.0 2.2E-36 4.9E-41 297.5 29.1 210 161-405 443-652 (707)
11 KOG0286 G-protein beta subunit 100.0 1.3E-34 2.8E-39 254.2 29.8 247 166-466 94-343 (343)
12 KOG0263 Transcription initiati 100.0 6.2E-36 1.3E-40 294.4 23.9 269 163-470 372-651 (707)
13 KOG0279 G protein beta subunit 100.0 1.4E-34 3E-39 252.6 28.8 256 161-468 55-313 (315)
14 KOG0284 Polyadenylation factor 100.0 1E-36 2.2E-41 278.3 15.7 248 160-468 87-337 (464)
15 KOG0286 G-protein beta subunit 100.0 5.5E-34 1.2E-38 250.3 29.0 254 163-470 49-305 (343)
16 KOG0273 Beta-transducin family 100.0 4.2E-34 9.2E-39 265.6 27.1 246 167-468 233-523 (524)
17 KOG0645 WD40 repeat protein [G 100.0 5.3E-32 1.1E-36 235.6 30.7 284 160-468 5-311 (312)
18 KOG0285 Pleiotropic regulator 100.0 1.4E-33 2.9E-38 253.9 21.4 245 163-470 145-391 (460)
19 KOG0264 Nucleosome remodeling 100.0 1.5E-32 3.3E-37 255.0 25.9 269 84-403 126-405 (422)
20 KOG0281 Beta-TrCP (transducin 100.0 2E-33 4.2E-38 251.9 16.2 311 57-470 166-479 (499)
21 KOG0265 U5 snRNP-specific prot 100.0 2.8E-32 6.1E-37 240.5 22.9 257 158-469 38-297 (338)
22 KOG0273 Beta-transducin family 100.0 7.3E-32 1.6E-36 250.8 25.9 265 158-470 167-484 (524)
23 KOG0295 WD40 repeat-containing 100.0 1.7E-32 3.7E-37 247.5 20.0 254 158-470 97-366 (406)
24 KOG0292 Vesicle coat complex C 100.0 4.8E-32 1E-36 268.4 24.1 252 160-468 42-321 (1202)
25 KOG0282 mRNA splicing factor [ 100.0 4.6E-33 1E-37 259.7 15.0 252 162-466 207-503 (503)
26 KOG0296 Angio-associated migra 100.0 9.4E-31 2E-35 236.4 29.0 248 163-468 58-398 (399)
27 KOG0315 G-protein beta subunit 100.0 2.8E-30 6E-35 222.2 29.9 255 163-471 33-291 (311)
28 KOG0295 WD40 repeat-containing 100.0 1.2E-31 2.5E-36 242.2 21.8 249 161-467 142-405 (406)
29 KOG0313 Microtubule binding pr 100.0 9.5E-31 2.1E-35 237.5 27.5 263 160-471 135-421 (423)
30 KOG0319 WD40-repeat-containing 100.0 3.5E-31 7.5E-36 258.5 25.4 258 164-472 360-623 (775)
31 KOG0772 Uncharacterized conser 100.0 4.7E-31 1E-35 247.7 25.2 284 162-466 160-485 (641)
32 KOG0265 U5 snRNP-specific prot 100.0 2.6E-30 5.7E-35 228.0 28.3 241 164-461 85-330 (338)
33 KOG0276 Vesicle coat complex C 100.0 5.7E-31 1.2E-35 252.2 25.6 245 168-469 54-299 (794)
34 KOG0291 WD40-repeat-containing 100.0 4.2E-30 9.1E-35 251.1 31.9 267 162-469 343-613 (893)
35 KOG0276 Vesicle coat complex C 100.0 2.3E-31 5.1E-36 254.9 21.2 249 165-470 9-259 (794)
36 KOG0293 WD40 repeat-containing 100.0 1.5E-30 3.1E-35 238.3 24.8 311 58-472 199-517 (519)
37 cd00200 WD40 WD40 domain, foun 100.0 5.8E-29 1.3E-33 234.7 35.6 244 163-466 45-289 (289)
38 KOG0277 Peroxisomal targeting 100.0 1.1E-30 2.4E-35 225.4 21.4 246 173-469 12-266 (311)
39 KOG0316 Conserved WD40 repeat- 100.0 1.2E-30 2.7E-35 222.6 21.4 247 163-470 11-259 (307)
40 PLN00181 protein SPA1-RELATED; 100.0 4.2E-29 9.2E-34 269.5 37.9 260 167-467 530-792 (793)
41 KOG0285 Pleiotropic regulator 100.0 2.6E-30 5.7E-35 232.8 23.3 279 91-469 161-440 (460)
42 KOG0291 WD40-repeat-containing 100.0 6.4E-29 1.4E-33 242.9 34.5 247 169-470 265-552 (893)
43 KOG0266 WD40 repeat-containing 100.0 1.2E-29 2.5E-34 255.6 30.1 248 164-468 198-454 (456)
44 KOG0266 WD40 repeat-containing 100.0 2.5E-29 5.3E-34 253.2 29.8 260 158-470 147-411 (456)
45 KOG1332 Vesicle coat complex C 100.0 4.4E-30 9.6E-35 220.4 18.2 261 164-469 6-287 (299)
46 KOG0283 WD40 repeat-containing 100.0 1.5E-29 3.3E-34 251.5 24.7 264 167-468 265-576 (712)
47 KOG0315 G-protein beta subunit 100.0 2E-28 4.3E-33 210.8 28.2 210 163-405 77-291 (311)
48 KOG0319 WD40-repeat-containing 100.0 1.6E-29 3.4E-34 246.9 24.0 253 163-470 317-579 (775)
49 KOG0269 WD40 repeat-containing 100.0 2.5E-30 5.4E-35 253.6 18.1 243 170-461 88-332 (839)
50 KOG0318 WD40 repeat stress pro 100.0 3.9E-28 8.4E-33 228.8 32.0 257 162-470 183-562 (603)
51 KOG0973 Histone transcription 100.0 8.8E-29 1.9E-33 251.9 27.9 322 73-478 16-367 (942)
52 cd00200 WD40 WD40 domain, foun 100.0 5E-28 1.1E-32 228.2 30.9 246 164-469 4-250 (289)
53 KOG0640 mRNA cleavage stimulat 100.0 3.1E-29 6.7E-34 222.0 20.5 363 11-467 43-425 (430)
54 PLN00181 protein SPA1-RELATED; 100.0 6.6E-28 1.4E-32 260.3 34.9 258 165-468 479-738 (793)
55 KOG0292 Vesicle coat complex C 100.0 2.6E-29 5.7E-34 249.1 21.5 249 168-470 8-282 (1202)
56 KOG0290 Conserved WD40 repeat- 100.0 1.6E-28 3.4E-33 215.8 23.5 319 64-466 38-363 (364)
57 PTZ00421 coronin; Provisional 100.0 6.6E-28 1.4E-32 242.2 30.9 215 165-404 71-292 (493)
58 KOG0281 Beta-TrCP (transducin 100.0 4.1E-30 9E-35 230.6 13.1 231 168-470 196-430 (499)
59 KOG1007 WD repeat protein TSSC 100.0 1.7E-28 3.8E-33 215.3 22.6 314 93-464 26-357 (370)
60 PTZ00421 coronin; Provisional 100.0 1.4E-27 3E-32 239.8 31.7 264 168-470 19-292 (493)
61 KOG0305 Anaphase promoting com 100.0 6.9E-28 1.5E-32 233.9 27.7 243 169-470 217-463 (484)
62 PTZ00420 coronin; Provisional 100.0 1.2E-26 2.5E-31 234.3 35.9 217 163-404 68-295 (568)
63 KOG0313 Microtubule binding pr 100.0 3.7E-28 8E-33 220.7 22.3 254 163-471 99-379 (423)
64 PTZ00420 coronin; Provisional 100.0 7E-27 1.5E-31 235.9 34.0 231 187-468 49-293 (568)
65 KOG0268 Sof1-like rRNA process 100.0 4.1E-29 8.8E-34 225.6 15.0 255 158-469 56-346 (433)
66 KOG0645 WD40 repeat protein [G 100.0 4.1E-27 8.9E-32 205.2 25.6 217 224-468 5-225 (312)
67 KOG0300 WD40 repeat-containing 100.0 1.4E-27 3.1E-32 212.0 22.0 274 160-468 181-476 (481)
68 KOG0275 Conserved WD40 repeat- 100.0 3.3E-29 7.1E-34 223.0 11.7 254 163-467 207-508 (508)
69 KOG0318 WD40 repeat stress pro 100.0 1.7E-26 3.6E-31 217.9 28.2 275 159-470 49-352 (603)
70 KOG0282 mRNA splicing factor [ 100.0 6.4E-28 1.4E-32 225.5 18.3 207 161-400 250-503 (503)
71 KOG0307 Vesicle coat complex C 100.0 2.1E-28 4.5E-33 250.2 16.3 260 168-472 63-331 (1049)
72 KOG0310 Conserved WD40 repeat- 100.0 1.6E-27 3.4E-32 223.2 20.9 244 169-470 26-270 (487)
73 KOG0310 Conserved WD40 repeat- 100.0 2.6E-27 5.6E-32 221.8 22.1 242 166-466 65-306 (487)
74 KOG0274 Cdc4 and related F-box 100.0 1.6E-26 3.6E-31 232.5 28.5 304 55-470 176-484 (537)
75 KOG0270 WD40 repeat-containing 100.0 4.6E-27 9.9E-32 217.7 22.0 290 53-405 154-452 (463)
76 KOG0306 WD40-repeat-containing 100.0 4.7E-26 1E-30 222.9 30.2 329 59-469 309-665 (888)
77 KOG0641 WD40 repeat protein [G 100.0 9.5E-26 2.1E-30 191.6 27.7 254 163-467 83-348 (350)
78 KOG0270 WD40 repeat-containing 100.0 4.8E-27 1E-31 217.6 20.3 266 173-470 177-451 (463)
79 KOG0288 WD40 repeat protein Ti 100.0 2.1E-27 4.6E-32 217.9 16.9 282 69-466 174-459 (459)
80 KOG0289 mRNA splicing factor [ 100.0 3.6E-26 7.8E-31 211.0 24.9 241 170-470 220-462 (506)
81 KOG0316 Conserved WD40 repeat- 100.0 7.7E-26 1.7E-30 193.4 24.1 249 158-467 48-298 (307)
82 KOG2445 Nuclear pore complex c 99.9 9.8E-26 2.1E-30 199.8 25.3 276 166-467 10-317 (361)
83 KOG0643 Translation initiation 99.9 5.7E-26 1.2E-30 197.6 23.1 239 164-461 5-254 (327)
84 KOG1407 WD40 repeat protein [F 99.9 2.4E-25 5.2E-30 193.2 26.5 273 71-459 21-293 (313)
85 KOG0294 WD40 repeat-containing 99.9 2.6E-25 5.5E-30 197.8 26.9 234 158-446 30-305 (362)
86 KOG0300 WD40 repeat-containing 99.9 1.5E-26 3.2E-31 205.6 18.9 252 163-470 142-430 (481)
87 KOG0269 WD40 repeat-containing 99.9 1.2E-26 2.6E-31 227.9 18.9 253 169-469 39-297 (839)
88 KOG0308 Conserved WD40 repeat- 99.9 3.6E-26 7.8E-31 220.5 21.4 213 163-404 67-287 (735)
89 KOG0278 Serine/threonine kinas 99.9 7E-27 1.5E-31 201.4 14.6 248 161-470 51-299 (334)
90 KOG0289 mRNA splicing factor [ 99.9 4.4E-25 9.5E-30 203.8 25.0 250 161-466 253-504 (506)
91 KOG0299 U3 snoRNP-associated p 99.9 3.8E-25 8.3E-30 205.8 23.9 245 166-468 199-456 (479)
92 KOG0640 mRNA cleavage stimulat 99.9 1E-25 2.3E-30 199.7 18.8 229 163-406 106-339 (430)
93 KOG1332 Vesicle coat complex C 99.9 4E-25 8.6E-30 190.1 20.5 222 160-404 47-288 (299)
94 KOG1407 WD40 repeat protein [F 99.9 5.7E-25 1.2E-29 190.9 21.5 240 163-461 14-253 (313)
95 KOG4328 WD40 protein [Function 99.9 7.4E-25 1.6E-29 203.7 23.2 265 164-469 181-451 (498)
96 KOG0308 Conserved WD40 repeat- 99.9 2E-25 4.4E-30 215.4 19.5 253 167-469 19-286 (735)
97 KOG0305 Anaphase promoting com 99.9 8.1E-25 1.8E-29 212.6 23.5 237 172-470 180-421 (484)
98 KOG0306 WD40-repeat-containing 99.9 7.2E-25 1.6E-29 214.6 22.3 217 164-403 449-665 (888)
99 KOG0267 Microtubule severing p 99.9 1.8E-26 4E-31 224.9 10.8 240 164-464 23-263 (825)
100 KOG0647 mRNA export protein (c 99.9 1.8E-24 4E-29 191.4 22.3 238 169-460 27-315 (347)
101 KOG0302 Ribosome Assembly prot 99.9 8.5E-25 1.8E-29 198.7 20.7 307 38-397 75-434 (440)
102 KOG0296 Angio-associated migra 99.9 9E-24 2E-28 191.4 26.2 206 161-402 98-398 (399)
103 KOG0641 WD40 repeat protein [G 99.9 6.8E-23 1.5E-27 174.3 29.5 268 158-467 21-302 (350)
104 KOG1446 Histone H3 (Lys4) meth 99.9 5.6E-23 1.2E-27 183.5 28.4 245 168-470 13-264 (311)
105 KOG0646 WD40 repeat protein [G 99.9 3.5E-24 7.6E-29 199.8 21.1 216 164-406 76-311 (476)
106 KOG1036 Mitotic spindle checkp 99.9 1.1E-23 2.4E-28 187.1 22.9 229 169-458 13-294 (323)
107 KOG0283 WD40 repeat-containing 99.9 1.1E-23 2.3E-28 210.0 24.9 204 164-403 364-577 (712)
108 KOG0274 Cdc4 and related F-box 99.9 6.6E-24 1.4E-28 213.7 23.5 235 167-470 206-443 (537)
109 KOG1408 WD40 repeat protein [F 99.9 1.8E-23 4E-28 203.5 25.1 278 158-469 358-714 (1080)
110 KOG0643 Translation initiation 99.9 2.2E-23 4.7E-28 181.6 22.9 261 163-467 46-316 (327)
111 KOG1446 Histone H3 (Lys4) meth 99.9 1E-21 2.2E-26 175.6 32.7 242 164-468 51-303 (311)
112 KOG0299 U3 snoRNP-associated p 99.9 4.9E-23 1.1E-27 191.8 23.2 276 163-471 136-413 (479)
113 KOG0293 WD40 repeat-containing 99.9 3.2E-23 6.9E-28 190.4 21.5 252 164-470 219-472 (519)
114 KOG0321 WD40 repeat-containing 99.9 3.7E-23 8.1E-28 199.4 22.9 257 164-470 95-393 (720)
115 KOG0290 Conserved WD40 repeat- 99.9 2.8E-23 6.1E-28 182.9 19.8 272 49-392 82-356 (364)
116 KOG4283 Transcription-coupled 99.9 8.4E-23 1.8E-27 180.2 22.4 226 165-406 39-280 (397)
117 KOG0973 Histone transcription 99.9 4.4E-23 9.6E-28 210.6 23.1 258 168-469 12-313 (942)
118 KOG0307 Vesicle coat complex C 99.9 3.8E-24 8.2E-29 219.2 14.5 216 163-405 110-330 (1049)
119 KOG0301 Phospholipase A2-activ 99.9 1.1E-22 2.5E-27 197.9 23.8 238 163-469 51-289 (745)
120 KOG0301 Phospholipase A2-activ 99.9 8.6E-23 1.9E-27 198.7 22.6 245 160-470 5-251 (745)
121 KOG0772 Uncharacterized conser 99.9 9.7E-24 2.1E-28 198.7 15.5 211 164-400 263-485 (641)
122 KOG0275 Conserved WD40 repeat- 99.9 5.4E-24 1.2E-28 189.8 12.4 206 231-467 211-422 (508)
123 KOG0288 WD40 repeat protein Ti 99.9 1.4E-23 3.1E-28 192.8 14.0 247 163-470 169-419 (459)
124 KOG2096 WD40 repeat protein [G 99.9 4.1E-22 8.8E-27 177.7 22.7 283 158-466 75-400 (420)
125 KOG4328 WD40 protein [Function 99.9 7.4E-22 1.6E-26 183.8 24.6 255 163-466 228-493 (498)
126 KOG0278 Serine/threonine kinas 99.9 4.9E-23 1.1E-27 177.7 15.0 206 164-406 95-301 (334)
127 KOG0267 Microtubule severing p 99.9 5.8E-24 1.3E-28 207.6 9.2 202 158-394 59-260 (825)
128 KOG1539 WD repeat protein [Gen 99.9 1.7E-20 3.6E-25 186.3 33.6 261 158-470 191-650 (910)
129 KOG0646 WD40 repeat protein [G 99.9 1.5E-22 3.2E-27 189.1 17.8 246 89-404 89-352 (476)
130 KOG0268 Sof1-like rRNA process 99.9 1.4E-22 2.9E-27 183.6 16.0 250 100-404 81-347 (433)
131 KOG4283 Transcription-coupled 99.9 3.3E-21 7.1E-26 170.2 24.0 245 165-467 97-364 (397)
132 KOG0647 mRNA export protein (c 99.9 2.1E-21 4.6E-26 172.0 22.7 224 232-469 26-282 (347)
133 KOG0294 WD40 repeat-containing 99.9 4.2E-21 9E-26 171.1 24.4 259 185-470 4-283 (362)
134 KOG0639 Transducin-like enhanc 99.9 2.9E-22 6.2E-27 188.2 17.6 248 164-469 414-664 (705)
135 KOG0639 Transducin-like enhanc 99.9 7.5E-22 1.6E-26 185.4 19.7 250 157-467 453-703 (705)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.6E-20 1.6E-24 175.1 32.7 242 169-470 30-281 (300)
137 KOG1587 Cytoplasmic dynein int 99.9 1E-20 2.2E-25 189.2 26.7 262 167-470 240-518 (555)
138 KOG1274 WD40 repeat protein [G 99.9 9.8E-21 2.1E-25 190.0 26.3 249 166-472 10-266 (933)
139 KOG1007 WD repeat protein TSSC 99.9 1.9E-21 4E-26 171.3 18.6 216 167-403 121-362 (370)
140 KOG0321 WD40 repeat-containing 99.9 1.5E-21 3.3E-26 188.4 19.8 257 175-472 55-351 (720)
141 KOG0650 WD40 repeat nucleolar 99.9 1.6E-21 3.4E-26 186.9 19.4 255 163-465 394-732 (733)
142 KOG4378 Nuclear protein COP1 [ 99.9 1.6E-21 3.5E-26 183.0 18.4 222 170-450 83-305 (673)
143 KOG2055 WD40 repeat protein [G 99.9 1.6E-20 3.4E-25 175.2 24.8 259 158-468 247-512 (514)
144 KOG1188 WD40 repeat protein [G 99.9 3.1E-21 6.7E-26 173.8 18.6 259 183-467 41-345 (376)
145 KOG1273 WD40 repeat protein [G 99.9 2.1E-20 4.5E-25 166.6 23.2 268 167-470 22-324 (405)
146 KOG1063 RNA polymerase II elon 99.9 7.8E-20 1.7E-24 178.3 26.7 279 165-469 263-700 (764)
147 KOG2919 Guanine nucleotide-bin 99.9 1.6E-19 3.4E-24 161.6 25.6 252 165-469 100-368 (406)
148 KOG4227 WD40 repeat protein [G 99.9 1.2E-20 2.5E-25 172.5 17.5 283 158-470 45-389 (609)
149 KOG2106 Uncharacterized conser 99.9 1.4E-18 3E-23 163.8 30.3 220 164-401 282-520 (626)
150 KOG4378 Nuclear protein COP1 [ 99.9 5.3E-20 1.1E-24 172.9 20.0 244 172-470 37-282 (673)
151 KOG2048 WD40 repeat protein [G 99.8 1.5E-18 3.2E-23 169.2 29.6 214 158-405 57-278 (691)
152 KOG1274 WD40 repeat protein [G 99.8 3.3E-19 7.1E-24 179.1 24.6 228 168-460 55-292 (933)
153 KOG1034 Transcriptional repres 99.8 1.2E-19 2.6E-24 162.7 19.2 216 160-402 126-383 (385)
154 KOG2445 Nuclear pore complex c 99.8 1.5E-18 3.2E-23 154.5 25.7 233 158-404 48-320 (361)
155 KOG0303 Actin-binding protein 99.8 1.5E-19 3.3E-24 165.6 19.3 217 165-405 77-297 (472)
156 KOG1036 Mitotic spindle checkp 99.8 1.6E-18 3.4E-23 154.5 24.9 249 50-392 34-294 (323)
157 KOG2048 WD40 repeat protein [G 99.8 1.5E-18 3.3E-23 169.1 25.9 237 169-465 25-272 (691)
158 KOG2106 Uncharacterized conser 99.8 8.2E-18 1.8E-22 158.7 29.3 240 170-470 247-523 (626)
159 KOG0642 Cell-cycle nuclear pro 99.8 1.1E-19 2.3E-24 173.8 16.6 223 161-405 286-564 (577)
160 KOG1009 Chromatin assembly com 99.8 1.2E-18 2.6E-23 160.4 22.7 270 160-470 56-376 (434)
161 KOG1034 Transcriptional repres 99.8 3.6E-19 7.8E-24 159.7 18.7 251 168-468 88-381 (385)
162 KOG1408 WD40 repeat protein [F 99.8 2.6E-19 5.6E-24 174.9 19.1 215 163-405 495-716 (1080)
163 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.2E-17 4.7E-22 158.1 30.9 200 171-405 74-282 (300)
164 KOG0303 Actin-binding protein 99.8 7.4E-19 1.6E-23 161.1 18.2 213 227-469 75-295 (472)
165 KOG2055 WD40 repeat protein [G 99.8 3.8E-18 8.2E-23 159.4 21.5 251 169-470 213-469 (514)
166 KOG2919 Guanine nucleotide-bin 99.8 5.8E-18 1.2E-22 151.7 21.4 259 172-471 52-330 (406)
167 KOG1587 Cytoplasmic dynein int 99.8 4.5E-18 9.8E-23 170.3 23.3 233 192-469 222-473 (555)
168 KOG1310 WD40 repeat protein [G 99.8 5.7E-19 1.2E-23 167.9 15.1 174 163-358 44-234 (758)
169 KOG1188 WD40 repeat protein [G 99.8 1.8E-18 3.8E-23 156.1 17.3 216 163-401 64-345 (376)
170 PF12265 CAF1C_H4-bd: Histone- 99.8 6.2E-21 1.4E-25 139.5 -0.4 69 50-119 2-73 (74)
171 KOG0644 Uncharacterized conser 99.8 3.6E-19 7.8E-24 176.7 11.1 246 163-468 184-468 (1113)
172 KOG1539 WD repeat protein [Gen 99.8 1.7E-16 3.7E-21 158.2 28.0 260 160-469 105-366 (910)
173 KOG1063 RNA polymerase II elon 99.8 8.2E-18 1.8E-22 164.3 17.8 216 163-402 519-763 (764)
174 KOG1523 Actin-related protein 99.8 2.1E-17 4.5E-22 148.0 18.9 213 169-405 10-239 (361)
175 KOG0649 WD40 repeat protein [G 99.8 4.6E-16 1E-20 134.4 26.4 246 92-404 21-276 (325)
176 KOG1517 Guanine nucleotide bin 99.8 5.6E-17 1.2E-21 165.0 24.2 263 170-470 1110-1383(1387)
177 KOG2096 WD40 repeat protein [G 99.8 3.2E-17 7E-22 146.6 19.3 217 226-468 79-308 (420)
178 KOG0322 G-protein beta subunit 99.8 1.5E-17 3.3E-22 145.1 16.6 257 158-468 5-323 (323)
179 KOG1445 Tumor-specific antigen 99.8 1.7E-17 3.7E-22 160.3 18.3 194 188-404 599-800 (1012)
180 KOG1538 Uncharacterized conser 99.8 1.1E-17 2.5E-22 162.3 17.1 234 171-467 14-251 (1081)
181 KOG0649 WD40 repeat protein [G 99.8 2E-16 4.4E-21 136.6 22.5 244 171-470 12-276 (325)
182 KOG1445 Tumor-specific antigen 99.8 4E-17 8.7E-22 157.8 18.6 215 168-404 626-846 (1012)
183 COG2319 FOG: WD40 repeat [Gene 99.8 9.8E-15 2.1E-19 145.2 35.8 251 160-470 146-402 (466)
184 COG2319 FOG: WD40 repeat [Gene 99.7 7.4E-15 1.6E-19 146.0 30.1 249 164-469 60-315 (466)
185 PRK11028 6-phosphogluconolacto 99.7 3.1E-14 6.8E-19 138.5 33.3 260 164-468 29-304 (330)
186 KOG1524 WD40 repeat-containing 99.7 2.5E-16 5.5E-21 149.7 17.7 203 183-460 76-278 (737)
187 KOG1273 WD40 repeat protein [G 99.7 9.6E-16 2.1E-20 137.1 19.9 198 236-470 26-228 (405)
188 KOG1517 Guanine nucleotide bin 99.7 2.3E-15 5E-20 153.5 24.1 253 170-468 1065-1333(1387)
189 KOG0771 Prolactin regulatory e 99.7 2.7E-16 5.9E-21 146.0 15.6 201 173-404 148-356 (398)
190 KOG1334 WD40 repeat protein [G 99.7 3.4E-16 7.3E-21 147.5 15.7 275 161-469 134-425 (559)
191 KOG0642 Cell-cycle nuclear pro 99.7 1.1E-15 2.4E-20 146.6 19.0 190 162-371 337-573 (577)
192 KOG1240 Protein kinase contain 99.7 6.8E-15 1.5E-19 152.3 25.0 229 158-406 1037-1277(1431)
193 KOG1538 Uncharacterized conser 99.7 2E-15 4.4E-20 146.9 19.3 242 163-468 47-293 (1081)
194 KOG0280 Uncharacterized conser 99.7 9.2E-15 2E-19 129.8 21.6 262 163-468 64-333 (339)
195 KOG1523 Actin-related protein 99.7 1.8E-15 3.8E-20 135.8 16.4 226 229-468 6-236 (361)
196 KOG0322 G-protein beta subunit 99.7 4.6E-15 1E-19 129.7 17.1 162 233-401 150-322 (323)
197 KOG0650 WD40 repeat nucleolar 99.7 1.6E-15 3.5E-20 146.1 15.0 206 163-399 515-732 (733)
198 KOG4227 WD40 repeat protein [G 99.7 1.2E-14 2.6E-19 133.4 19.2 235 227-469 50-323 (609)
199 KOG1009 Chromatin assembly com 99.6 1.9E-15 4.1E-20 139.5 13.7 173 168-357 12-197 (434)
200 KOG1272 WD40-repeat-containing 99.6 4.6E-16 1E-20 145.7 9.7 233 168-461 169-401 (545)
201 KOG2321 WD40 repeat protein [G 99.6 3.6E-14 7.8E-19 136.4 22.6 271 163-470 45-345 (703)
202 KOG1963 WD40 repeat protein [G 99.6 9.1E-14 2E-18 140.1 26.3 262 166-469 202-539 (792)
203 PRK01742 tolB translocation pr 99.6 3.3E-14 7.2E-19 143.0 22.5 215 191-470 183-403 (429)
204 PRK01742 tolB translocation pr 99.6 5.8E-14 1.3E-18 141.2 24.1 199 164-402 198-401 (429)
205 KOG2110 Uncharacterized conser 99.6 2.7E-13 5.9E-18 124.1 25.5 235 171-471 7-251 (391)
206 KOG1272 WD40-repeat-containing 99.6 1E-15 2.2E-20 143.5 9.4 232 170-467 130-361 (545)
207 KOG0771 Prolactin regulatory e 99.6 2.7E-13 5.9E-18 126.2 24.9 199 237-469 148-355 (398)
208 KOG1524 WD40 repeat-containing 99.6 3.2E-14 6.9E-19 135.6 16.8 173 248-463 77-250 (737)
209 KOG2394 WD40 protein DMR-N9 [G 99.6 2.5E-14 5.5E-19 136.5 14.9 164 234-404 220-454 (636)
210 KOG2139 WD40 repeat protein [G 99.6 7.2E-13 1.6E-17 121.0 23.4 255 169-461 98-368 (445)
211 KOG0280 Uncharacterized conser 99.6 1.5E-13 3.2E-18 122.2 18.4 233 190-470 44-286 (339)
212 KOG2394 WD40 protein DMR-N9 [G 99.6 1.7E-13 3.6E-18 130.9 20.0 171 248-448 187-384 (636)
213 KOG3881 Uncharacterized conser 99.6 1.7E-13 3.8E-18 126.2 19.5 210 169-404 105-322 (412)
214 KOG1240 Protein kinase contain 99.6 9.2E-13 2E-17 136.8 26.7 313 91-466 1059-1431(1431)
215 KOG0644 Uncharacterized conser 99.6 3E-15 6.6E-20 149.1 7.8 232 224-470 181-428 (1113)
216 KOG3881 Uncharacterized conser 99.6 4E-13 8.6E-18 123.9 21.0 251 169-469 55-321 (412)
217 KOG1310 WD40 repeat protein [G 99.6 1.3E-14 2.7E-19 138.7 11.5 186 274-475 44-238 (758)
218 KOG4497 Uncharacterized conser 99.6 2.5E-13 5.4E-18 122.5 19.0 249 158-469 80-392 (447)
219 KOG2111 Uncharacterized conser 99.6 1.5E-11 3.3E-16 110.8 28.6 170 223-405 85-259 (346)
220 KOG1334 WD40 repeat protein [G 99.6 5.3E-14 1.1E-18 132.8 13.5 259 165-470 181-468 (559)
221 KOG2110 Uncharacterized conser 99.5 6.3E-12 1.4E-16 115.3 26.0 188 183-405 57-251 (391)
222 KOG1409 Uncharacterized conser 99.5 2.6E-13 5.7E-18 123.1 16.5 286 157-470 12-396 (404)
223 PF08662 eIF2A: Eukaryotic tra 99.5 8E-13 1.7E-17 117.4 19.4 152 237-403 9-180 (194)
224 PRK03629 tolB translocation pr 99.5 8.9E-12 1.9E-16 125.2 29.0 200 165-403 194-407 (429)
225 KOG2139 WD40 repeat protein [G 99.5 1.1E-11 2.4E-16 113.3 26.5 217 169-404 140-385 (445)
226 KOG1354 Serine/threonine prote 99.5 4.3E-13 9.3E-18 121.7 16.6 230 168-405 83-362 (433)
227 PRK11028 6-phosphogluconolacto 99.5 7.5E-12 1.6E-16 121.8 26.2 246 184-468 4-258 (330)
228 PRK02889 tolB translocation pr 99.5 4.6E-12 9.9E-17 127.4 25.1 200 227-462 189-394 (427)
229 PRK05137 tolB translocation pr 99.5 1.1E-11 2.3E-16 125.2 27.5 195 225-460 193-398 (435)
230 KOG1963 WD40 repeat protein [G 99.5 5.4E-12 1.2E-16 127.5 24.3 256 163-472 51-326 (792)
231 PRK04922 tolB translocation pr 99.5 9.3E-12 2E-16 125.5 26.4 201 165-403 199-412 (433)
232 PF08662 eIF2A: Eukaryotic tra 99.5 2.1E-12 4.5E-17 114.8 19.0 151 284-468 9-179 (194)
233 PRK03629 tolB translocation pr 99.5 2.5E-11 5.4E-16 122.0 27.8 201 228-469 193-404 (429)
234 PRK04922 tolB translocation pr 99.5 8.1E-12 1.8E-16 125.9 24.3 200 227-467 197-410 (433)
235 PRK05137 tolB translocation pr 99.5 3.7E-11 8.1E-16 121.3 28.1 203 164-404 196-414 (435)
236 KOG1354 Serine/threonine prote 99.5 1.5E-11 3.2E-16 111.8 21.2 255 169-466 25-357 (433)
237 KOG2111 Uncharacterized conser 99.5 2.4E-10 5.3E-15 103.1 28.6 164 166-358 91-259 (346)
238 PRK02889 tolB translocation pr 99.5 1.3E-11 2.9E-16 124.0 22.8 203 165-401 191-402 (427)
239 KOG2321 WD40 repeat protein [G 99.4 3.8E-11 8.3E-16 115.9 22.7 201 175-405 139-346 (703)
240 KOG4497 Uncharacterized conser 99.4 7.5E-13 1.6E-17 119.4 9.4 223 174-464 13-236 (447)
241 KOG0309 Conserved WD40 repeat- 99.4 1.7E-12 3.7E-17 128.2 12.5 212 166-405 21-235 (1081)
242 PF10282 Lactonase: Lactonase, 99.4 1.3E-09 2.8E-14 106.5 32.7 265 166-468 33-322 (345)
243 KOG1064 RAVE (regulator of V-A 99.4 2.7E-12 5.8E-17 137.6 13.6 193 166-405 2205-2401(2439)
244 TIGR02800 propeller_TolB tol-p 99.4 4.2E-10 9E-15 113.3 27.9 200 227-467 183-393 (417)
245 KOG4547 WD40 repeat-containing 99.4 7.2E-11 1.6E-15 114.7 20.7 198 179-405 2-223 (541)
246 KOG0974 WD-repeat protein WDR6 99.3 7E-11 1.5E-15 121.6 17.6 193 175-405 93-291 (967)
247 PRK00178 tolB translocation pr 99.3 2E-09 4.4E-14 108.7 27.9 202 164-402 193-406 (430)
248 TIGR02800 propeller_TolB tol-p 99.3 1.2E-09 2.6E-14 109.9 25.9 200 164-401 184-396 (417)
249 KOG0309 Conserved WD40 repeat- 99.3 1.9E-11 4.2E-16 120.9 12.1 220 160-403 105-340 (1081)
250 PRK04792 tolB translocation pr 99.3 8.6E-10 1.9E-14 111.4 22.6 202 165-402 213-425 (448)
251 KOG0974 WD-repeat protein WDR6 99.3 2.3E-10 4.9E-15 117.9 18.1 197 239-470 93-290 (967)
252 PRK00178 tolB translocation pr 99.3 2.2E-09 4.8E-14 108.4 25.4 195 227-461 192-396 (430)
253 PF02239 Cytochrom_D1: Cytochr 99.3 6.7E-09 1.5E-13 101.6 27.5 247 173-470 40-349 (369)
254 PRK04792 tolB translocation pr 99.3 2.8E-09 6E-14 107.7 25.3 194 228-461 212-415 (448)
255 PRK01029 tolB translocation pr 99.2 3.6E-09 7.8E-14 106.1 25.6 208 167-404 182-405 (428)
256 KOG1064 RAVE (regulator of V-A 99.2 5.5E-11 1.2E-15 127.9 12.4 189 158-395 2241-2439(2439)
257 KOG4714 Nucleoporin [Nuclear s 99.2 7.4E-11 1.6E-15 103.5 10.2 172 223-403 79-255 (319)
258 PRK01029 tolB translocation pr 99.2 1.1E-08 2.4E-13 102.6 26.7 205 229-467 180-402 (428)
259 KOG4532 WD40-like repeat conta 99.2 3.7E-09 8E-14 93.4 19.4 230 183-459 85-323 (344)
260 KOG1409 Uncharacterized conser 99.2 8.8E-10 1.9E-14 100.5 15.9 168 169-357 68-272 (404)
261 KOG2041 WD40 repeat protein [G 99.2 1.2E-09 2.7E-14 108.1 17.5 255 166-460 11-279 (1189)
262 KOG2315 Predicted translation 99.1 3.7E-08 8E-13 95.6 24.1 202 167-404 163-392 (566)
263 KOG4547 WD40 repeat-containing 99.1 1.7E-08 3.7E-13 98.5 21.0 187 248-469 7-221 (541)
264 PF10282 Lactonase: Lactonase, 99.1 5.2E-07 1.1E-11 88.2 30.8 220 168-404 85-324 (345)
265 PF02239 Cytochrom_D1: Cytochr 99.1 6E-08 1.3E-12 94.9 23.9 191 184-405 8-205 (369)
266 KOG2315 Predicted translation 99.0 7.6E-08 1.6E-12 93.5 23.2 234 173-468 129-390 (566)
267 KOG1008 Uncharacterized conser 99.0 1.5E-10 3.3E-15 113.3 4.2 211 169-405 56-278 (783)
268 KOG4714 Nucleoporin [Nuclear s 99.0 4.2E-09 9.1E-14 92.7 12.2 164 167-356 87-255 (319)
269 COG2706 3-carboxymuconate cycl 99.0 2.5E-06 5.5E-11 79.1 30.8 263 163-470 33-323 (346)
270 KOG4190 Uncharacterized conser 99.0 8.7E-10 1.9E-14 106.1 7.9 213 163-403 729-949 (1034)
271 COG5170 CDC55 Serine/threonine 99.0 8.6E-09 1.9E-13 92.9 13.0 225 233-470 26-311 (460)
272 PLN02919 haloacid dehalogenase 99.0 7.8E-07 1.7E-11 98.4 30.5 271 173-469 571-889 (1057)
273 KOG2695 WD40 repeat protein [G 99.0 3.1E-09 6.7E-14 97.0 9.2 159 236-404 214-378 (425)
274 COG5170 CDC55 Serine/threonine 98.9 2.9E-08 6.3E-13 89.5 14.8 218 169-407 26-314 (460)
275 KOG1912 WD40 repeat protein [G 98.9 2E-07 4.4E-12 93.6 22.2 248 168-469 14-305 (1062)
276 KOG3914 WD repeat protein WDR4 98.9 2.4E-08 5.3E-13 93.2 13.1 160 171-359 64-227 (390)
277 PLN02919 haloacid dehalogenase 98.9 4.6E-07 9.9E-12 100.2 24.9 221 172-405 626-891 (1057)
278 PF04762 IKI3: IKI3 family; I 98.9 1.7E-06 3.7E-11 94.0 28.6 286 169-467 120-455 (928)
279 PF04762 IKI3: IKI3 family; I 98.9 9.3E-07 2E-11 96.0 26.6 251 168-466 74-377 (928)
280 KOG4532 WD40-like repeat conta 98.8 4.7E-07 1E-11 80.3 18.7 148 186-359 132-286 (344)
281 COG5354 Uncharacterized protei 98.8 1.2E-06 2.6E-11 84.3 23.0 197 169-404 173-397 (561)
282 KOG2314 Translation initiation 98.8 2.2E-06 4.8E-11 83.3 23.1 239 163-459 244-558 (698)
283 KOG2066 Vacuolar assembly/sort 98.8 2.2E-07 4.8E-12 94.0 16.9 195 158-402 21-233 (846)
284 KOG2695 WD40 repeat protein [G 98.8 1.5E-08 3.3E-13 92.6 7.9 143 232-380 251-401 (425)
285 PRK04043 tolB translocation pr 98.8 1E-05 2.2E-10 80.9 27.6 197 170-403 188-401 (419)
286 PF08450 SGL: SMP-30/Gluconola 98.8 1.7E-05 3.7E-10 73.6 27.5 229 174-458 4-245 (246)
287 COG2706 3-carboxymuconate cycl 98.8 9.8E-05 2.1E-09 68.8 31.3 210 173-404 92-323 (346)
288 KOG2041 WD40 repeat protein [G 98.7 1.5E-06 3.2E-11 86.8 20.4 199 161-393 63-279 (1189)
289 TIGR02658 TTQ_MADH_Hv methylam 98.7 4.2E-05 9.2E-10 73.6 30.0 237 177-470 53-332 (352)
290 COG5354 Uncharacterized protei 98.7 6.6E-06 1.4E-10 79.4 23.4 204 165-404 68-308 (561)
291 KOG4190 Uncharacterized conser 98.7 4.3E-08 9.3E-13 94.7 8.5 170 225-405 727-909 (1034)
292 KOG1008 Uncharacterized conser 98.7 4.3E-09 9.3E-14 103.4 1.5 207 233-470 56-277 (783)
293 PRK04043 tolB translocation pr 98.7 1.2E-05 2.7E-10 80.2 26.1 187 235-461 189-390 (419)
294 KOG3914 WD repeat protein WDR4 98.7 2.9E-07 6.3E-12 86.1 13.2 161 236-407 65-228 (390)
295 PF15492 Nbas_N: Neuroblastoma 98.7 8.1E-06 1.8E-10 73.7 21.1 201 171-405 45-262 (282)
296 KOG1645 RING-finger-containing 98.7 9.7E-07 2.1E-11 82.6 15.7 89 223-316 183-271 (463)
297 KOG1912 WD40 repeat protein [G 98.6 2.2E-06 4.7E-11 86.5 18.3 158 235-404 17-188 (1062)
298 KOG1832 HIV-1 Vpr-binding prot 98.6 3.4E-08 7.3E-13 100.3 4.9 194 164-405 1096-1294(1516)
299 PF00400 WD40: WD domain, G-be 98.5 2.4E-07 5.3E-12 58.8 6.0 37 363-400 3-39 (39)
300 KOG0882 Cyclophilin-related pe 98.5 2.9E-06 6.3E-11 80.6 15.4 277 165-469 5-306 (558)
301 KOG1275 PAB-dependent poly(A) 98.5 1.8E-06 3.8E-11 88.6 14.8 186 247-469 148-343 (1118)
302 KOG1275 PAB-dependent poly(A) 98.5 2.1E-06 4.6E-11 88.0 15.3 184 183-400 148-340 (1118)
303 KOG1645 RING-finger-containing 98.5 1.6E-06 3.5E-11 81.2 13.1 123 275-404 188-317 (463)
304 PF15492 Nbas_N: Neuroblastoma 98.5 9.9E-05 2.2E-09 66.8 23.2 193 235-470 45-261 (282)
305 PF00400 WD40: WD domain, G-be 98.5 7.7E-07 1.7E-11 56.5 6.5 37 316-353 3-39 (39)
306 COG4946 Uncharacterized protei 98.4 9.3E-05 2E-09 71.1 22.3 149 241-405 327-480 (668)
307 KOG2314 Translation initiation 98.4 8E-05 1.7E-09 72.8 21.9 234 172-468 213-478 (698)
308 KOG1920 IkappaB kinase complex 98.3 0.00016 3.5E-09 77.0 23.6 204 170-404 69-324 (1265)
309 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00047 1E-08 66.4 25.2 198 172-405 107-333 (352)
310 KOG1832 HIV-1 Vpr-binding prot 98.3 4.7E-07 1E-11 92.2 4.2 162 223-404 1091-1257(1516)
311 COG4946 Uncharacterized protei 98.3 0.00016 3.5E-09 69.5 20.6 167 182-387 332-503 (668)
312 KOG2114 Vacuolar assembly/sort 98.3 0.00022 4.7E-09 73.4 22.8 198 177-404 31-245 (933)
313 PF07433 DUF1513: Protein of u 98.3 0.0013 2.8E-08 61.4 26.1 233 170-461 5-278 (305)
314 KOG2066 Vacuolar assembly/sort 98.3 5.6E-05 1.2E-09 77.1 18.3 148 233-405 39-190 (846)
315 PF11768 DUF3312: Protein of u 98.3 3.5E-05 7.7E-10 76.3 16.3 117 235-357 207-331 (545)
316 PF08450 SGL: SMP-30/Gluconola 98.2 0.00059 1.3E-08 63.3 23.3 185 172-391 42-245 (246)
317 KOG0882 Cyclophilin-related pe 98.2 1.6E-05 3.5E-10 75.6 11.7 220 231-470 7-233 (558)
318 PF11768 DUF3312: Protein of u 98.1 5.5E-05 1.2E-09 75.0 14.1 75 231-313 257-331 (545)
319 KOG1920 IkappaB kinase complex 98.1 0.0013 2.9E-08 70.3 24.3 155 237-403 199-366 (1265)
320 PF08553 VID27: VID27 cytoplas 98.1 0.00031 6.7E-09 74.0 19.0 137 253-402 501-647 (794)
321 KOG3617 WD40 and TPR repeat-co 98.0 0.00022 4.8E-09 73.1 16.8 71 171-264 61-131 (1416)
322 KOG3617 WD40 and TPR repeat-co 98.0 0.00024 5.2E-09 72.9 15.8 256 175-469 21-334 (1416)
323 KOG2114 Vacuolar assembly/sort 98.0 0.00089 1.9E-08 69.1 19.5 198 240-470 30-245 (933)
324 PF07433 DUF1513: Protein of u 98.0 0.0017 3.6E-08 60.7 19.7 186 175-396 56-279 (305)
325 PF06977 SdiA-regulated: SdiA- 98.0 0.011 2.4E-07 54.3 24.8 205 164-399 16-247 (248)
326 KOG3621 WD40 repeat-containing 97.9 0.00031 6.8E-09 70.9 15.3 142 170-334 34-180 (726)
327 KOG3621 WD40 repeat-containing 97.8 0.00036 7.7E-09 70.5 13.9 149 235-391 35-188 (726)
328 PF08596 Lgl_C: Lethal giant l 97.8 0.011 2.5E-07 58.3 23.7 267 171-470 3-337 (395)
329 TIGR03300 assembly_YfgL outer 97.8 0.018 3.8E-07 57.1 25.0 144 248-405 192-341 (377)
330 COG0823 TolB Periplasmic compo 97.7 0.005 1.1E-07 61.5 19.2 189 169-389 192-387 (425)
331 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.031 6.8E-07 54.8 24.3 153 280-460 183-349 (353)
332 COG0823 TolB Periplasmic compo 97.6 0.0032 6.9E-08 62.8 17.2 163 228-404 187-360 (425)
333 PF13360 PQQ_2: PQQ-like domai 97.6 0.0067 1.4E-07 55.7 18.5 182 184-405 38-233 (238)
334 PF00930 DPPIV_N: Dipeptidyl p 97.6 0.028 6E-07 55.2 23.3 204 233-468 42-313 (353)
335 PF13360 PQQ_2: PQQ-like domai 97.6 0.019 4.1E-07 52.7 20.7 140 248-404 38-193 (238)
336 TIGR03300 assembly_YfgL outer 97.5 0.014 2.9E-07 58.0 20.6 131 248-399 243-376 (377)
337 PF04053 Coatomer_WDAD: Coatom 97.5 0.0035 7.7E-08 62.7 16.2 193 228-464 27-219 (443)
338 PF04841 Vps16_N: Vps16, N-ter 97.5 0.11 2.4E-06 52.0 26.7 166 224-404 71-248 (410)
339 PF03178 CPSF_A: CPSF A subuni 97.5 0.0094 2E-07 57.7 18.6 158 163-351 82-261 (321)
340 KOG4640 Anaphase-promoting com 97.5 0.00045 9.8E-09 68.9 8.9 95 233-334 20-115 (665)
341 PF08553 VID27: VID27 cytoplas 97.5 0.0089 1.9E-07 63.3 18.4 125 223-354 514-646 (794)
342 KOG4640 Anaphase-promoting com 97.4 0.0007 1.5E-08 67.6 9.5 94 280-381 20-115 (665)
343 PF06977 SdiA-regulated: SdiA- 97.4 0.071 1.5E-06 49.0 21.8 169 228-402 16-201 (248)
344 PF02897 Peptidase_S9_N: Proly 97.3 0.18 3.8E-06 50.7 25.9 201 172-402 126-357 (414)
345 PF03178 CPSF_A: CPSF A subuni 97.3 0.1 2.2E-06 50.5 23.1 146 248-404 44-204 (321)
346 smart00320 WD40 WD40 repeats. 97.3 0.0008 1.7E-08 41.0 5.4 37 363-400 4-40 (40)
347 smart00320 WD40 WD40 repeats. 97.3 0.00066 1.4E-08 41.4 4.9 38 224-262 3-40 (40)
348 PF08596 Lgl_C: Lethal giant l 97.2 0.018 3.9E-07 56.9 16.7 204 166-392 83-326 (395)
349 KOG2395 Protein involved in va 97.1 0.013 2.9E-07 57.7 14.3 143 248-403 348-501 (644)
350 PF04841 Vps16_N: Vps16, N-ter 97.0 0.41 9E-06 47.9 28.5 181 170-381 81-269 (410)
351 PF04053 Coatomer_WDAD: Coatom 97.0 0.3 6.4E-06 49.1 23.0 184 165-398 28-219 (443)
352 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.018 4E-07 45.1 11.3 102 236-350 2-109 (111)
353 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.061 1.3E-06 42.2 13.4 102 283-397 2-109 (111)
354 KOG3630 Nuclear pore complex, 96.9 0.019 4.1E-07 61.5 13.8 200 171-383 43-255 (1405)
355 KOG4649 PQQ (pyrrolo-quinoline 96.9 0.3 6.5E-06 44.2 19.0 141 246-400 23-163 (354)
356 PRK02888 nitrous-oxide reducta 96.8 0.052 1.1E-06 55.7 16.0 109 289-403 285-405 (635)
357 COG3391 Uncharacterized conser 96.8 0.41 8.9E-06 47.5 22.1 202 170-405 74-286 (381)
358 KOG2079 Vacuolar assembly/sort 96.8 0.0079 1.7E-07 63.9 10.0 102 295-404 101-205 (1206)
359 KOG2444 WD40 repeat protein [G 96.8 0.0028 6E-08 55.8 5.7 145 249-405 33-180 (238)
360 PRK02888 nitrous-oxide reducta 96.8 0.19 4.1E-06 51.8 19.3 110 242-356 285-405 (635)
361 PRK11138 outer membrane biogen 96.7 0.22 4.8E-06 49.7 19.6 133 248-401 258-393 (394)
362 KOG2079 Vacuolar assembly/sort 96.6 0.044 9.5E-07 58.6 13.9 100 183-310 100-202 (1206)
363 COG3386 Gluconolactonase [Carb 96.5 0.77 1.7E-05 43.8 26.4 199 176-402 31-243 (307)
364 KOG2444 WD40 repeat protein [G 96.5 0.0093 2E-07 52.6 7.1 105 248-357 72-179 (238)
365 PF15390 DUF4613: Domain of un 96.5 0.28 6E-06 49.5 17.7 124 232-356 55-187 (671)
366 COG3391 Uncharacterized conser 96.4 1.2 2.5E-05 44.3 25.9 158 235-404 75-241 (381)
367 KOG2395 Protein involved in va 96.4 0.031 6.7E-07 55.2 10.5 126 223-355 366-500 (644)
368 PF02897 Peptidase_S9_N: Proly 96.4 1.3 2.8E-05 44.4 27.1 205 175-405 175-407 (414)
369 PRK11138 outer membrane biogen 96.3 1.3 2.8E-05 44.1 24.3 143 248-404 207-355 (394)
370 COG3204 Uncharacterized protei 96.1 1.1 2.5E-05 41.4 18.1 167 231-404 83-265 (316)
371 KOG3630 Nuclear pore complex, 96.0 0.19 4.1E-06 54.3 14.8 148 169-336 100-255 (1405)
372 KOG4649 PQQ (pyrrolo-quinoline 96.0 1.2 2.6E-05 40.5 18.2 141 177-351 18-161 (354)
373 PF15390 DUF4613: Domain of un 95.9 0.33 7.2E-06 49.0 15.1 129 164-313 51-188 (671)
374 PF14583 Pectate_lyase22: Olig 95.9 1.9 4.1E-05 42.1 21.1 140 176-343 42-206 (386)
375 PRK13616 lipoprotein LpqB; Pro 95.8 1.3 2.8E-05 46.4 20.2 183 170-394 350-560 (591)
376 PF00780 CNH: CNH domain; Int 95.8 0.84 1.8E-05 42.9 17.5 143 248-404 9-167 (275)
377 KOG2377 Uncharacterized conser 95.8 0.75 1.6E-05 45.0 16.4 163 158-344 5-173 (657)
378 COG3386 Gluconolactonase [Carb 95.7 2 4.3E-05 41.0 20.0 110 277-392 159-276 (307)
379 PF08728 CRT10: CRT10; InterP 95.7 0.16 3.6E-06 53.1 12.6 138 169-310 100-245 (717)
380 PF12894 Apc4_WD40: Anaphase-p 95.6 0.049 1.1E-06 35.7 5.7 31 233-264 11-41 (47)
381 PF12894 Apc4_WD40: Anaphase-p 95.6 0.04 8.8E-07 36.1 5.3 31 371-402 11-41 (47)
382 COG3490 Uncharacterized protei 95.6 1.5 3.2E-05 40.5 16.6 205 170-405 68-313 (366)
383 KOG4441 Proteins containing BT 95.3 1.6 3.4E-05 45.7 18.5 189 182-405 285-502 (571)
384 PF14870 PSII_BNR: Photosynthe 95.3 1.4 3E-05 41.9 16.4 158 165-352 140-301 (302)
385 PF10647 Gmad1: Lipoprotein Lp 95.2 1.1 2.5E-05 41.5 15.7 162 282-466 25-192 (253)
386 PHA02713 hypothetical protein; 95.2 0.62 1.4E-05 48.7 15.4 145 248-405 354-536 (557)
387 PF06433 Me-amine-dh_H: Methyl 95.1 2 4.4E-05 41.0 16.7 157 243-405 144-323 (342)
388 PRK13616 lipoprotein LpqB; Pro 95.0 3.1 6.8E-05 43.7 19.8 154 234-404 350-527 (591)
389 PF00780 CNH: CNH domain; Int 95.0 3.1 6.7E-05 38.9 26.1 145 183-358 8-168 (275)
390 KOG4441 Proteins containing BT 94.7 6.5 0.00014 41.2 21.8 144 248-404 383-548 (571)
391 PF12234 Rav1p_C: RAVE protein 94.6 1.1 2.4E-05 46.8 14.8 115 285-404 34-158 (631)
392 PF14761 HPS3_N: Hermansky-Pud 94.5 2.3 5E-05 37.8 14.6 154 295-468 31-214 (215)
393 PF10313 DUF2415: Uncharacteri 94.5 0.15 3.2E-06 32.4 5.1 33 281-313 1-35 (43)
394 PF08728 CRT10: CRT10; InterP 94.1 3.4 7.5E-05 43.7 17.3 119 235-354 102-245 (717)
395 KOG1916 Nuclear protein, conta 94.0 0.07 1.5E-06 56.0 4.8 207 165-403 128-375 (1283)
396 PF14727 PHTB1_N: PTHB1 N-term 94.0 7.4 0.00016 38.8 19.3 155 243-404 34-206 (418)
397 PF05694 SBP56: 56kDa selenium 93.9 7.3 0.00016 38.6 24.6 203 182-405 88-345 (461)
398 COG5167 VID27 Protein involved 93.7 1.9 4E-05 43.0 13.5 142 248-404 482-634 (776)
399 KOG4460 Nuclear pore complex, 93.6 0.93 2E-05 45.2 11.3 79 326-405 105-201 (741)
400 PF10168 Nup88: Nuclear pore c 93.6 1.6 3.4E-05 46.8 14.0 80 325-405 85-182 (717)
401 PF05694 SBP56: 56kDa selenium 93.5 0.76 1.6E-05 45.2 10.4 107 191-318 221-349 (461)
402 PF10313 DUF2415: Uncharacteri 93.5 0.3 6.4E-06 31.1 5.1 31 326-356 2-34 (43)
403 PF12234 Rav1p_C: RAVE protein 93.4 3.8 8.2E-05 42.9 16.0 123 326-468 31-156 (631)
404 COG3204 Uncharacterized protei 93.2 7.2 0.00016 36.4 18.9 167 167-357 83-265 (316)
405 PF07995 GSDH: Glucose / Sorbo 93.1 9 0.0002 37.1 18.7 253 171-466 3-331 (331)
406 KOG1916 Nuclear protein, conta 93.0 0.045 9.7E-07 57.4 1.5 174 158-358 168-377 (1283)
407 PRK13684 Ycf48-like protein; P 93.0 8.7 0.00019 37.3 17.3 155 169-354 172-330 (334)
408 COG3490 Uncharacterized protei 92.5 8.9 0.00019 35.6 18.0 189 176-400 120-346 (366)
409 PF10168 Nup88: Nuclear pore c 92.5 18 0.00039 39.0 25.2 86 234-320 85-188 (717)
410 PF06433 Me-amine-dh_H: Methyl 92.3 5 0.00011 38.4 14.0 169 178-369 143-330 (342)
411 TIGR02604 Piru_Ver_Nterm putat 92.3 4.9 0.00011 39.6 14.9 147 235-393 15-204 (367)
412 TIGR02604 Piru_Ver_Nterm putat 92.3 12 0.00027 36.8 24.5 107 233-346 71-204 (367)
413 PF14583 Pectate_lyase22: Olig 92.3 5.4 0.00012 39.0 14.3 169 287-468 42-222 (386)
414 PHA03098 kelch-like protein; P 92.3 5.8 0.00013 41.3 16.1 144 248-404 345-513 (534)
415 PF14727 PHTB1_N: PTHB1 N-term 91.9 15 0.00031 36.8 24.6 200 171-405 130-363 (418)
416 PF10647 Gmad1: Lipoprotein Lp 91.8 11 0.00023 35.0 19.9 150 171-347 25-187 (253)
417 KOG2280 Vacuolar assembly/sort 91.7 20 0.00043 37.9 18.6 169 224-405 74-249 (829)
418 PHA02713 hypothetical protein; 91.7 6 0.00013 41.5 15.3 94 257-358 433-536 (557)
419 cd00216 PQQ_DH Dehydrogenases 91.6 18 0.00039 37.2 20.2 146 248-405 112-322 (488)
420 KOG4499 Ca2+-binding protein R 91.5 8.2 0.00018 34.8 13.2 103 283-390 160-272 (310)
421 PF12657 TFIIIC_delta: Transcr 90.6 1.7 3.7E-05 37.7 8.5 32 372-403 86-122 (173)
422 KOG1897 Damage-specific DNA bi 90.6 30 0.00064 37.8 22.6 198 168-392 529-734 (1096)
423 PRK10115 protease 2; Provision 90.2 30 0.00065 37.3 29.5 266 50-404 109-396 (686)
424 PF05096 Glu_cyclase_2: Glutam 90.2 15 0.00033 33.9 14.6 132 184-344 103-250 (264)
425 KOG2247 WD40 repeat-containing 89.1 0.049 1.1E-06 53.4 -2.5 145 235-395 36-181 (615)
426 KOG2377 Uncharacterized conser 88.9 7.9 0.00017 38.3 12.0 157 236-402 25-185 (657)
427 PF12657 TFIIIC_delta: Transcr 88.9 4.9 0.00011 34.8 10.0 31 235-265 87-122 (173)
428 PF10214 Rrn6: RNA polymerase 88.6 42 0.00091 36.8 31.1 227 167-404 77-331 (765)
429 PF12768 Rax2: Cortical protei 88.6 11 0.00024 35.5 12.7 115 256-381 16-146 (281)
430 KOG2247 WD40 repeat-containing 88.5 0.091 2E-06 51.6 -1.2 112 167-308 72-185 (615)
431 PHA02790 Kelch-like protein; P 88.1 18 0.0004 37.0 15.2 141 248-404 321-472 (480)
432 KOG2280 Vacuolar assembly/sort 87.9 28 0.0006 36.9 15.7 52 324-381 216-269 (829)
433 KOG1900 Nuclear pore complex, 87.4 22 0.00047 40.0 15.5 141 254-404 97-274 (1311)
434 PRK10115 protease 2; Provision 87.3 47 0.001 35.9 29.4 202 170-403 127-345 (686)
435 COG5167 VID27 Protein involved 86.4 14 0.0003 37.2 12.1 126 223-356 500-633 (776)
436 KOG4460 Nuclear pore complex, 86.1 7.8 0.00017 39.0 10.3 77 280-358 103-201 (741)
437 COG5276 Uncharacterized conser 86.1 30 0.00065 32.4 25.8 164 163-358 80-244 (370)
438 PHA03098 kelch-like protein; P 85.6 42 0.00091 34.9 16.6 103 248-358 392-514 (534)
439 KOG1896 mRNA cleavage and poly 85.3 48 0.001 37.1 16.5 122 163-311 1091-1213(1366)
440 PF07569 Hira: TUP1-like enhan 84.8 5.8 0.00013 35.8 8.5 66 290-358 20-98 (219)
441 PF07569 Hira: TUP1-like enhan 84.6 6.4 0.00014 35.6 8.6 68 334-404 20-97 (219)
442 KOG1900 Nuclear pore complex, 84.5 23 0.0005 39.9 13.9 161 168-358 77-275 (1311)
443 cd00216 PQQ_DH Dehydrogenases 83.6 57 0.0012 33.6 24.3 98 295-405 303-427 (488)
444 PF12768 Rax2: Cortical protei 82.9 36 0.00079 32.0 13.1 79 232-312 35-124 (281)
445 PF14655 RAB3GAP2_N: Rab3 GTPa 81.8 18 0.00039 36.0 11.2 89 226-320 300-406 (415)
446 COG4590 ABC-type uncharacteriz 80.1 20 0.00044 35.5 10.4 163 279-471 219-389 (733)
447 KOG1898 Splicing factor 3b, su 80.1 1E+02 0.0023 34.2 16.6 140 257-405 854-1007(1205)
448 PF14655 RAB3GAP2_N: Rab3 GTPa 78.4 32 0.00069 34.4 11.6 84 280-369 307-408 (415)
449 COG5290 IkappaB kinase complex 78.2 1E+02 0.0022 33.1 17.3 105 328-461 250-359 (1243)
450 PF10214 Rrn6: RNA polymerase 76.9 1.2E+02 0.0026 33.2 29.2 169 231-404 77-278 (765)
451 PF14781 BBS2_N: Ciliary BBSom 76.8 40 0.00087 27.6 11.8 114 239-357 4-127 (136)
452 PF14781 BBS2_N: Ciliary BBSom 76.6 41 0.00088 27.6 12.0 110 285-402 3-125 (136)
453 TIGR02276 beta_rpt_yvtn 40-res 76.3 14 0.0003 22.9 5.8 32 334-369 1-32 (42)
454 PF07676 PD40: WD40-like Beta 76.2 11 0.00023 23.1 5.1 34 164-197 3-38 (39)
455 KOG1897 Damage-specific DNA bi 76.2 1.3E+02 0.0028 33.2 27.9 116 283-404 490-615 (1096)
456 COG5290 IkappaB kinase complex 75.8 64 0.0014 34.6 13.0 102 284-392 250-357 (1243)
457 PRK13684 Ycf48-like protein; P 74.9 84 0.0018 30.4 19.8 156 233-402 172-331 (334)
458 KOG4499 Ca2+-binding protein R 74.6 67 0.0015 29.2 20.1 152 280-460 108-276 (310)
459 TIGR02276 beta_rpt_yvtn 40-res 73.9 15 0.00032 22.7 5.5 32 290-322 1-32 (42)
460 PF07995 GSDH: Glucose / Sorbo 72.7 95 0.0021 30.0 16.6 110 235-348 3-136 (331)
461 PF07676 PD40: WD40-like Beta 72.6 19 0.0004 22.0 5.6 31 322-352 6-38 (39)
462 KOG3522 Predicted guanine nucl 72.3 42 0.0009 36.1 10.9 143 248-404 549-699 (925)
463 PF02333 Phytase: Phytase; In 72.1 1.1E+02 0.0023 30.3 22.3 202 238-468 58-290 (381)
464 KOG1983 Tomosyn and related SN 71.9 58 0.0012 36.7 12.7 34 167-201 33-66 (993)
465 PLN00033 photosystem II stabil 71.4 1.1E+02 0.0025 30.4 17.7 149 236-399 241-396 (398)
466 PF11715 Nup160: Nucleoporin N 70.3 31 0.00066 36.1 9.9 68 247-314 159-251 (547)
467 PF11715 Nup160: Nucleoporin N 69.4 29 0.00063 36.3 9.5 69 295-367 160-256 (547)
468 PLN00033 photosystem II stabil 68.5 1.3E+02 0.0029 30.0 18.7 111 233-352 280-396 (398)
469 TIGR03548 mutarot_permut cycli 67.3 1.2E+02 0.0026 29.0 17.9 62 295-358 126-197 (323)
470 PF13449 Phytase-like: Esteras 67.0 1.2E+02 0.0027 29.1 21.1 217 234-462 20-311 (326)
471 PF08801 Nucleoporin_N: Nup133 65.7 1.5E+02 0.0033 29.7 14.4 32 372-404 190-221 (422)
472 PF14870 PSII_BNR: Photosynthe 65.7 1.3E+02 0.0028 28.8 25.0 200 164-400 11-213 (302)
473 COG5308 NUP170 Nuclear pore co 65.1 74 0.0016 34.6 10.9 78 324-405 181-278 (1263)
474 PLN02193 nitrile-specifier pro 65.0 1.7E+02 0.0037 29.9 14.9 102 248-358 281-413 (470)
475 PF02333 Phytase: Phytase; In 64.8 1.5E+02 0.0032 29.3 22.3 147 256-404 127-292 (381)
476 PF14761 HPS3_N: Hermansky-Pud 62.1 1.1E+02 0.0024 27.4 10.1 126 338-470 30-165 (215)
477 PF13449 Phytase-like: Esteras 61.3 1.6E+02 0.0034 28.4 22.9 165 169-342 19-231 (326)
478 TIGR03118 PEPCTERM_chp_1 conse 61.1 1.5E+02 0.0033 28.1 13.4 121 283-404 25-172 (336)
479 PF10395 Utp8: Utp8 family; I 57.7 2.6E+02 0.0057 29.8 21.6 227 158-405 59-308 (670)
480 KOG1898 Splicing factor 3b, su 56.2 3.4E+02 0.0073 30.5 15.8 111 235-354 935-1047(1205)
481 COG4590 ABC-type uncharacteriz 55.2 60 0.0013 32.4 7.8 168 166-358 217-389 (733)
482 PF14779 BBS1: Ciliary BBSome 54.8 86 0.0019 29.0 8.5 75 166-261 173-255 (257)
483 PF11635 Med16: Mediator compl 54.4 2.4E+02 0.0051 31.0 13.3 134 171-306 182-345 (753)
484 PLN02153 epithiospecifier prot 54.1 2.1E+02 0.0046 27.6 12.5 19 295-313 88-111 (341)
485 TIGR03075 PQQ_enz_alc_DH PQQ-d 53.5 2E+02 0.0044 29.9 12.2 104 248-358 71-192 (527)
486 PF14779 BBS1: Ciliary BBSome 52.5 1.3E+02 0.0028 27.8 9.3 60 335-399 193-255 (257)
487 TIGR03118 PEPCTERM_chp_1 conse 52.1 2.2E+02 0.0047 27.2 23.3 214 171-405 24-282 (336)
488 PLN02153 epithiospecifier prot 51.9 2.3E+02 0.005 27.4 17.0 12 347-358 217-228 (341)
489 PF05096 Glu_cyclase_2: Glutam 51.9 2E+02 0.0044 26.7 22.8 190 163-391 36-250 (264)
490 PHA02790 Kelch-like protein; P 51.2 2.9E+02 0.0063 28.3 13.1 99 248-357 365-472 (480)
491 TIGR03075 PQQ_enz_alc_DH PQQ-d 49.6 3.3E+02 0.0071 28.4 21.1 149 248-406 122-337 (527)
492 PLN02193 nitrile-specifier pro 45.7 3.5E+02 0.0075 27.6 17.6 102 248-358 231-354 (470)
493 PF12341 DUF3639: Protein of u 45.6 57 0.0012 18.5 3.9 24 326-352 3-26 (27)
494 TIGR03606 non_repeat_PQQ dehyd 45.4 3.5E+02 0.0075 27.6 15.4 63 229-292 25-90 (454)
495 KOG2714 SETA binding protein S 45.3 1E+02 0.0023 30.5 7.7 67 248-314 237-309 (465)
496 TIGR03606 non_repeat_PQQ dehyd 45.3 3.5E+02 0.0076 27.5 16.2 56 324-382 29-89 (454)
497 KOG3616 Selective LIM binding 41.4 61 0.0013 34.4 5.8 33 280-313 14-46 (1636)
498 PF01731 Arylesterase: Arylest 41.3 78 0.0017 23.8 5.1 32 281-312 54-85 (86)
499 COG4880 Secreted protein conta 39.0 4.1E+02 0.0089 26.6 16.2 160 166-358 424-595 (603)
500 PF06524 NOA36: NOA36 protein; 38.4 22 0.00047 32.4 1.9 25 130-154 272-296 (314)
No 1
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=100.00 E-value=6.8e-86 Score=594.01 Aligned_cols=407 Identities=54% Similarity=0.975 Sum_probs=360.9
Q ss_pred CCCCCCeeecCCcc-cCCCCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEE
Q 039302 33 IPSLPTKVWQPGVD-KLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIG 111 (479)
Q Consensus 33 ~~~~~~~~~~~~~~-~~~~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~ 111 (479)
.+....++|+||.. +|++||+|++||++|.|+|.++++||||+|+++||.+|++|++||++.|+|+||||.....|.|+
T Consensus 31 i~~d~~~~~lpg~~~~l~~~EeL~~DpsaYe~lH~~~~gwPcLsfDVi~D~LG~eR~e~P~~~Ylv~gtQa~~~~~N~l~ 110 (440)
T KOG0302|consen 31 IEEDGAQVYLPGMSRPLGDDEELVADPSAYEMLHNFNSGWPCLSFDVIPDRLGDERTEFPHTAYLVAGTQALDAPDNELM 110 (440)
T ss_pred cccccceeeccCCCCCCCCCceEecCHHHHHHhhcccCCCcccceeeecCCCCcccccCchHhhhhhhhhccccccCceE
Confidence 45555889999965 49999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCC-CcEEEEEeC
Q 039302 112 VFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQN-PHICASWAD 190 (479)
Q Consensus 112 v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~-~~~lat~s~ 190 (479)
||+++||++++... +.++.++++|++++ ++|++..+.++|.+.||+++.++.+ ..++|+++.
T Consensus 111 vlkl~nl~~t~~~~------------~gd~~~~~eddedD-----~~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse 173 (440)
T KOG0302|consen 111 VLKLSNLHKTRNPN------------DGDGEDEEEDDEDD-----RKPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSE 173 (440)
T ss_pred EEEeeeeecccCCc------------cCCCCCccccchhh-----ccccccccccccccccceeeecccCCcceeeeecc
Confidence 99999999998732 11111111111111 5899999999999999999999985 689999999
Q ss_pred CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccc
Q 039302 191 TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN 270 (479)
Q Consensus 191 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~ 270 (479)
.|.|+||++..+.+.+..+...... ...+|++++.+|..+.++|+|||...+.|+||++-+.|++|...+ +.|.
T Consensus 174 ~G~V~Vw~l~~~l~~l~~~~~~~~~-----s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~ 247 (440)
T KOG0302|consen 174 NGRVQVWDLAPHLNALSEPGLEVKD-----SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWK 247 (440)
T ss_pred cCcEEEEEchhhhhhhcCccccccc-----cccCceEEecccCccceeeecccccccccccCccccceEeeeecc-Ccee
Confidence 9999999999988887766554443 357899999999999999999998888999999999999999988 7899
Q ss_pred cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeE
Q 039302 271 VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK-SALMSFKAHNADVNVISWNRLASCLLASGSDDGTF 349 (479)
Q Consensus 271 ~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i 349 (479)
+...+|.+|+.+|.+|+|||...++|++||.||+|+|||+|.+. .+....++|.+.||.|+||... .+||+|++||++
T Consensus 248 vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~-~lLasG~DdGt~ 326 (440)
T KOG0302|consen 248 VDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE-PLLASGGDDGTL 326 (440)
T ss_pred ecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc-ceeeecCCCceE
Confidence 99999999999999999999999999999999999999999983 3445559999999999999998 599999999999
Q ss_pred EEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCC
Q 039302 350 SIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPP 429 (479)
Q Consensus 350 ~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 429 (479)
+|||||+.+. ..++.+|+.|+.+|++|.|+|+....|+++|.|++|.||||....+.++... .......++||
T Consensus 327 ~iwDLR~~~~-~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~------~a~~~L~dlPp 399 (440)
T KOG0302|consen 327 SIWDLRQFKS-GQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQ------EAAEGLQDLPP 399 (440)
T ss_pred EEEEhhhccC-CCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhcc------ccccchhcCCc
Confidence 9999999886 4799999999999999999999999999999999999999999987655432 12333668999
Q ss_pred ceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 430 QLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 430 ~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
||+|+|+|++.|++++||++.|++|+|++.+||+||++.++
T Consensus 400 QLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfktIsv 440 (440)
T KOG0302|consen 400 QLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKTISV 440 (440)
T ss_pred eeEEEecchhHhhhheeccCCCCeEEEecccceeEEEeccC
Confidence 99999999999999999999999999999999999999874
No 2
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-63 Score=461.59 Aligned_cols=382 Identities=32% Similarity=0.579 Sum_probs=319.0
Q ss_pred CCCCCeeecCCcccCCCCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEE
Q 039302 34 PSLPTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVF 113 (479)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~ 113 (479)
-+.+.++|...++ +|||++++++|+|||||+||+||........|. .++|++||||+++.+|+|+|.
T Consensus 16 i~Eey~~WKkNtp------------~LYDlv~th~LeWPSLt~qWlPd~~~~~~~~~~-~~rliLGthTs~~~~n~L~iA 82 (422)
T KOG0264|consen 16 INEEYKIWKKNTP------------FLYDLVITHALEWPSLTVQWLPDVTKPEEKDFS-KQRLILGTHTSGSEQNYLVIA 82 (422)
T ss_pred ccchhhHHhhcCc------------HHHHHhhhccccccceEEEEcCCcccccCCCce-eEEEEEEeecCCCCccEEEEE
Confidence 3445789999987 999999999999999999999995544444443 689999999999999999999
Q ss_pred EeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCC--C-ceeEEEEecCCcceeEEEEecCCCcEEEEEeC
Q 039302 114 KVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSG--T-PILQLRKVAHQGCVNRIRAMSQNPHICASWAD 190 (479)
Q Consensus 114 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~-p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~ 190 (479)
++ .|+...... + +...+.+..+.+++. . .+.....+.|.++||++|++|+++.+|||++.
T Consensus 83 ~v-~lp~~~~~~----------~------~~~~~~e~~e~~g~~~~~~~v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~ 145 (422)
T KOG0264|consen 83 SV-QLPTDDAQF----------E------DKHYDEERGEFGGFGAVSGKVEISQKINHDGEVNRARYMPQNPNIVATKTS 145 (422)
T ss_pred ee-cCCCccccc----------c------cccccccccccCCccccccceEEEEeccCCccchhhhhCCCCCcEEEecCC
Confidence 98 454332211 1 111122222222221 2 23345789999999999999999999999999
Q ss_pred CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc-
Q 039302 191 TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW- 269 (479)
Q Consensus 191 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~- 269 (479)
.+.|+|||..++.......+ ...|..++.||.++.++|.|++...+.|++|+.|+.|++||++.....
T Consensus 146 ~~dv~Vfd~tk~~s~~~~~~-----------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~ 214 (422)
T KOG0264|consen 146 SGDVYVFDYTKHPSKPKASG-----------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED 214 (422)
T ss_pred CCCEEEEEeccCCCcccccc-----------cCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC
Confidence 99999999998654442221 357778999999999999999999999999999999999999875442
Q ss_pred --ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC
Q 039302 270 --NVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV-GKSALMSFKAHNADVNVISWNRLASCLLASGSDD 346 (479)
Q Consensus 270 --~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~-~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d 346 (479)
......+.+|...|++++|++...++|++++.|+.+.|||+|+ ..++.....+|...|+|++|+|.+..+|||||.|
T Consensus 215 ~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D 294 (422)
T KOG0264|consen 215 KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSAD 294 (422)
T ss_pred ccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCC
Confidence 3334568899999999999999999999999999999999996 2336677899999999999999999999999999
Q ss_pred CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 347 GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 347 g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
++|++||+|+... ++.++.+|...|.+|.|+|+...+||+++.|+++.|||+....... ......+
T Consensus 295 ~tV~LwDlRnL~~---~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq-----------~~eda~d 360 (422)
T KOG0264|consen 295 KTVALWDLRNLNK---PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQ-----------SPEDAED 360 (422)
T ss_pred CcEEEeechhccc---CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccccc-----------Chhhhcc
Confidence 9999999999987 9999999999999999999999999999999999999999875431 1234568
Q ss_pred CCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 427 LPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 427 ~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.||+++|.|+||. .|.+++|+|+.|++|+|.++|+ +.||++...
T Consensus 361 gppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 361 GPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred CCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 9999999999998 5999999999999999999999 899999854
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-41 Score=312.24 Aligned_cols=249 Identities=22% Similarity=0.357 Sum_probs=224.6
Q ss_pred eEEEEecCCcceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
+...+.+|.+.|.++.|+|. ...-+|||+.||+|++|+++. ..++..+.+|...|..+
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~---------------------e~~l~~l~gH~~RVs~V 267 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ---------------------ETPLQDLEGHLARVSRV 267 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC---------------------Ccchhhhhcchhhheee
Confidence 44689999999999999998 457899999999999999997 58889999999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|+|+|. +|+|++.|.+-++||+.+... .....||...|.+|+|+|+|. +++||+.|..-+|||+|+++ ++..
T Consensus 268 afHPsG~-~L~TasfD~tWRlWD~~tk~E----lL~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr-~im~ 340 (459)
T KOG0272|consen 268 AFHPSGK-FLGTASFDSTWRLWDLETKSE----LLLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGR-CIMF 340 (459)
T ss_pred eecCCCc-eeeecccccchhhcccccchh----hHhhcccccccceeEecCCCc-eeeccCccchhheeecccCc-EEEE
Confidence 9999999 999999999999999988654 244789999999999999999 99999999999999999997 7888
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
+.+|...|.+|+|+|+| ..|||||.|++++|||+|..+ .+.++.+|..-|+.|.|+|..+++|+|+|.|++++||
T Consensus 341 L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDLR~r~----~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDLRMRS----ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred ecccccceeeEeECCCc-eEEeecCCCCcEEEeeecccc----cceecccccchhhheEecccCCeEEEEcccCcceeee
Confidence 99999999999999999 999999999999999999988 7999999999999999999888999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
.-..... .+.+..|. ..|.++..+|++. .+++++.|. +++|.+
T Consensus 416 s~~~~~~----------------------~ksLaGHe--~kV~s~Dis~d~~-~i~t~s~DRT~KLW~~ 459 (459)
T KOG0272|consen 416 STRTWSP----------------------LKSLAGHE--GKVISLDISPDSQ-AIATSSFDRTIKLWRP 459 (459)
T ss_pred cCCCccc----------------------chhhcCCc--cceEEEEeccCCc-eEEEeccCceeeeccC
Confidence 9887632 23344443 4699999999995 788888887 888863
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.8e-40 Score=302.93 Aligned_cols=250 Identities=21% Similarity=0.338 Sum_probs=223.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...++-+.+|..+.|++++ .+|||||.+|.++||+... ...+.+|.||...+.++.|+
T Consensus 169 ~SQ~gd~rPis~~~fS~ds-~~laT~swsG~~kvW~~~~---------------------~~~~~~l~gH~~~v~~~~fh 226 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSFSRDS-KHLATGSWSGLVKVWSVPQ---------------------CNLLQTLRGHTSRVGAAVFH 226 (459)
T ss_pred hhhccCCCcceeeEeecCC-CeEEEeecCCceeEeecCC---------------------cceeEEEeccccceeeEEEc
Confidence 3456778999999999999 8999999999999999987 67889999999999999999
Q ss_pred CCC-CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 243 PVA-PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 243 ~~~-~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
|.. ...||||+.||++++|++.+... ...+.+|...|..++|+|+|+ +|+|++.|.+-++||++++. .+....
T Consensus 227 P~~~~~~lat~s~Dgtvklw~~~~e~~----l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~-ElL~QE 300 (459)
T KOG0272|consen 227 PVDSDLNLATASADGTVKLWKLSQETP----LQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKS-ELLLQE 300 (459)
T ss_pred cCCCccceeeeccCCceeeeccCCCcc----hhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccch-hhHhhc
Confidence 983 44899999999999999977433 467899999999999999999 99999999999999999986 566679
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...|.+++|+++| .+++|||.|..-+|||+|++. ++..+.+|..+|.+|+|+|++ +.|||||.|++++||||
T Consensus 301 GHs~~v~~iaf~~DG-SL~~tGGlD~~~RvWDlRtgr----~im~L~gH~k~I~~V~fsPNG-y~lATgs~Dnt~kVWDL 374 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDG-SLAATGGLDSLGRVWDLRTGR----CIMFLAGHIKEILSVAFSPNG-YHLATGSSDNTCKVWDL 374 (459)
T ss_pred ccccccceeEecCCC-ceeeccCccchhheeecccCc----EEEEecccccceeeEeECCCc-eEEeecCCCCcEEEeee
Confidence 999999999999999 999999999999999999999 899999999999999999965 99999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+.... ..++..|. .-|+.|.|.|+...+|++++.|+ ++||...+.
T Consensus 375 R~r~~----------------------ly~ipAH~--nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~ 420 (459)
T KOG0272|consen 375 RMRSE----------------------LYTIPAHS--NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTW 420 (459)
T ss_pred ccccc----------------------ceeccccc--chhhheEecccCCeEEEEcccCcceeeecCCCc
Confidence 98742 13344443 56999999997778999999999 999987665
No 5
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-39 Score=293.54 Aligned_cols=250 Identities=24% Similarity=0.460 Sum_probs=215.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|.++|-|++|+|++ ..||||+.|.+|++||+.+ ..|+++.++|..-|.|++|+|
T Consensus 110 S~~GH~e~Vl~~~fsp~g-~~l~tGsGD~TvR~WD~~T---------------------eTp~~t~KgH~~WVlcvawsP 167 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTG-SRLVTGSGDTTVRLWDLDT---------------------ETPLFTCKGHKNWVLCVAWSP 167 (480)
T ss_pred ccCCCCCcEEEEEecCCC-ceEEecCCCceEEeeccCC---------------------CCcceeecCCccEEEEEEECC
Confidence 467999999999999988 7899999999999999998 689999999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC-----CCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT-----ESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-----~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++. .||+|+.||.|++||..+++... ..+.+|...|++++|.|- .+ +||++|.||.|+|||+..+. ++.
T Consensus 168 Dgk-~iASG~~dg~I~lwdpktg~~~g---~~l~gH~K~It~Lawep~hl~p~~r-~las~skDg~vrIWd~~~~~-~~~ 241 (480)
T KOG0271|consen 168 DGK-KIASGSKDGSIRLWDPKTGQQIG---RALRGHKKWITALAWEPLHLVPPCR-RLASSSKDGSVRIWDTKLGT-CVR 241 (480)
T ss_pred Ccc-hhhccccCCeEEEecCCCCCccc---ccccCcccceeEEeecccccCCCcc-ceecccCCCCEEEEEccCce-EEE
Confidence 998 99999999999999999876644 779999999999999774 34 89999999999999999875 888
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC---------------------------------------
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--------------------------------------- 359 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--------------------------------------- 359 (479)
.+.+|...|+|+.|--++ +|++|+.|++|++|+...+..
T Consensus 242 ~lsgHT~~VTCvrwGG~g--liySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se 319 (480)
T KOG0271|consen 242 TLSGHTASVTCVRWGGEG--LIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSE 319 (480)
T ss_pred EeccCccceEEEEEcCCc--eEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHH
Confidence 899999999999998655 899999999999998654211
Q ss_pred ------------------------------------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 360 ------------------------------------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 360 ------------------------------------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
...++..+.+|..-|+.+.|+|++ .++|++|-|..|++|+.++
T Consensus 320 ~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 320 EQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCC
Confidence 012445566889999999999965 9999999999999999999
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++. +....|| ..|..++|+.+.. ||+||+.|. ++||++..-
T Consensus 399 Gk~-------------------------lasfRGHv~~VYqvawsaDsR-LlVS~SkDsTLKvw~V~tk 441 (480)
T KOG0271|consen 399 GKF-------------------------LASFRGHVAAVYQVAWSADSR-LLVSGSKDSTLKVWDVRTK 441 (480)
T ss_pred cch-------------------------hhhhhhccceeEEEEeccCcc-EEEEcCCCceEEEEEeeee
Confidence 852 2222333 4799999999884 999999998 999988653
No 6
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-39 Score=280.68 Aligned_cols=259 Identities=25% Similarity=0.456 Sum_probs=229.6
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+.+.+.+...-...+..++|++...+.+++++.||.++|||+.. ...|+..++.|..+|+
T Consensus 49 ~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~--------------------~s~Pi~~~kEH~~EV~ 108 (311)
T KOG0277|consen 49 KGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM--------------------PSKPIHKFKEHKREVY 108 (311)
T ss_pred CCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCC--------------------CCcchhHHHhhhhheE
Confidence 45666777788899999999999989999999999999999776 4679999999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++|++.....+++++-|++|+||+....+. ..+|.+|...|...+|+|..+++|+++|.|++++|||+|...+.+
T Consensus 109 Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~S----v~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 109 SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNS----VQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred EeccccccceeEEeeccCCceEeecCCCCcc----eEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee
Confidence 9999998877899999999999999977554 356999999999999999999999999999999999999986444
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.+.+|...|.++.|+..+.++|+||+.|+.|++||+|+.+. |+..+.+|.-.|+.|+|||+...+||+++.|-+++
T Consensus 185 -~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~---pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~r 260 (311)
T KOG0277|consen 185 -SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT---PLFELNGHGLAVRKVKFSPHHASLLASASYDMTVR 260 (311)
T ss_pred -EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccc---cceeecCCceEEEEEecCcchhhHhhhccccceEE
Confidence 48999999999999999989999999999999999999987 89999999999999999999999999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
|||...+.... +....|. .-|..+.|++..++.+|+++.|. ++||++
T Consensus 261 iw~~~~~ds~~---------------------e~~~~Ht--EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 261 IWDPERQDSAI---------------------ETVDHHT--EFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ecccccchhhh---------------------hhhhccc--eEEeccccccccCceeeecccccceeeecc
Confidence 99998663211 1112222 35899999999999999999999 999986
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.6e-38 Score=286.46 Aligned_cols=245 Identities=23% Similarity=0.333 Sum_probs=214.2
Q ss_pred EEEecCCcceeEEEEecCC----CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 163 LRKVAHQGCVNRIRAMSQN----PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
..+.+|+..|++++|.|-. ..+||+++.||.|+|||+.. +.++..+.||+.+|+|
T Consensus 194 ~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~---------------------~~~~~~lsgHT~~VTC 252 (480)
T KOG0271|consen 194 RALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL---------------------GTCVRTLSGHTASVTC 252 (480)
T ss_pred ccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC---------------------ceEEEEeccCccceEE
Confidence 3577999999999999853 46899999999999999987 7889999999999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC-----------CCCCc-------------
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS-----------PTESD------------- 294 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s-----------p~~~~------------- 294 (479)
+.|--.+ +|++|+.|++|++|+...+.. .+.+.+|...|+.|+.+ |.+..
T Consensus 253 vrwGG~g--liySgS~DrtIkvw~a~dG~~----~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~ 326 (480)
T KOG0271|consen 253 VRWGGEG--LIYSGSQDRTIKVWRALDGKL----CRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALE 326 (480)
T ss_pred EEEcCCc--eEEecCCCceEEEEEccchhH----HHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHH
Confidence 9997554 999999999999999977544 36789999999999876 33331
Q ss_pred -----------EEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 295 -----------VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 295 -----------~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
.+++|++|.++.+|+-...++++....+|..-|+.+.|+|++ .++|+++.|..|++||.++++ .
T Consensus 327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~-r~IASaSFDkSVkLW~g~tGk----~ 401 (480)
T KOG0271|consen 327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG-RYIASASFDKSVKLWDGRTGK----F 401 (480)
T ss_pred HHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCc-cEEEEeecccceeeeeCCCcc----h
Confidence 499999999999999988877888999999999999999999 999999999999999999999 7
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-Cee
Q 039302 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLK 442 (479)
Q Consensus 364 ~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~ 442 (479)
+.+|++|-++|+.|+|+.+. ++|++||.|.++++|++++.+ +.+-..||. .|.
T Consensus 402 lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkK-------------------------l~~DLpGh~DEVf 455 (480)
T KOG0271|consen 402 LASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKK-------------------------LKQDLPGHADEVF 455 (480)
T ss_pred hhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeee-------------------------ecccCCCCCceEE
Confidence 99999999999999999955 999999999999999999874 223333444 699
Q ss_pred eEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 443 ELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 443 ~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
++.|+|+|. .++|++.|. +++|+
T Consensus 456 ~vDwspDG~-rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 456 AVDWSPDGQ-RVASGGKDKVLRLWR 479 (480)
T ss_pred EEEecCCCc-eeecCCCceEEEeec
Confidence 999999995 899999996 56654
No 8
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.2e-38 Score=288.12 Aligned_cols=246 Identities=21% Similarity=0.382 Sum_probs=215.2
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEE
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAID 240 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~ 240 (479)
+..+..|...|.++.|++++ ..+++|..+|.|++|+.+. +.+..+.+|. ..|.+++
T Consensus 131 EtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnm----------------------nnVk~~~ahh~eaIRdla 187 (464)
T KOG0284|consen 131 ETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNM----------------------NNVKIIQAHHAEAIRDLA 187 (464)
T ss_pred HHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccch----------------------hhhHHhhHhhhhhhheec
Confidence 35678999999999999999 7888999999999999876 3344455555 7999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|... .|++|+.||+|+|||....... ..+.+|.-.|.+++|+|.-. +++++|.|..|++||.|++. ++.++
T Consensus 188 fSpnDs-kF~t~SdDg~ikiWdf~~~kee----~vL~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~-cl~tl 260 (464)
T KOG0284|consen 188 FSPNDS-KFLTCSDDGTIKIWDFRMPKEE----RVLRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGS-CLATL 260 (464)
T ss_pred cCCCCc-eeEEecCCCeEEEEeccCCchh----heeccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcc-hhhhh
Confidence 999776 9999999999999999775442 44689999999999999988 99999999999999999996 89999
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
..|+..|..+.|+|++ ++|+|+|.|..++++|+|+.+ .+.++++|+..|+++.|+|-...+|.+|+.||.|..|.
T Consensus 261 h~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk----El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~ 335 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK----ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWV 335 (464)
T ss_pred hhccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH----HHHHhhcchhhheeeccccccccceeeccCCCceEEEe
Confidence 9999999999999999 999999999999999999877 68999999999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
+...... +.+-..|. ..|++++|||-| ++|++++.|. +++|.
T Consensus 336 v~~~~p~---------------------~~i~~AHd--~~iwsl~~hPlG-hil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 336 VGLEEPL---------------------GEIPPAHD--GEIWSLAYHPLG-HILATGSNDRTVRFWT 378 (464)
T ss_pred ccccccc---------------------cCCCcccc--cceeeeeccccc-eeEeecCCCcceeeec
Confidence 9854311 12223343 579999999998 6999999998 77774
No 9
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-36 Score=264.74 Aligned_cols=256 Identities=20% Similarity=0.271 Sum_probs=222.0
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.+...+.+|++.|..++..+.++.++.+++.|.++.+|++...... .+.+++.|.||...|..+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~----------------~G~~~r~~~GHsH~v~dv 69 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK----------------YGVPVRRLTGHSHFVSDV 69 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc----------------cCceeeeeeccceEecce
Confidence 4556789999999999999999999999999999999999874222 378899999999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+.++++. +.++++.|+.+++||+.++.. .+.|.+|+..|.+++|+++++ .+++||.|++|++|++... +..+
T Consensus 70 ~~s~dg~-~alS~swD~~lrlWDl~~g~~----t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~--ck~t 141 (315)
T KOG0279|consen 70 VLSSDGN-FALSASWDGTLRLWDLATGES----TRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGV--CKYT 141 (315)
T ss_pred EEccCCc-eEEeccccceEEEEEecCCcE----EEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeeccc--EEEE
Confidence 9999998 999999999999999988644 366999999999999999998 9999999999999999876 3444
Q ss_pred Eec--CCCCEEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 320 FKA--HNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 320 ~~~--h~~~v~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+.. +...|+|+.|+|+. ..+|++++.|++|++||+++.+ ....+.+|++.++.++++|++ .++++|+.||.+
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~----l~~~~~gh~~~v~t~~vSpDG-slcasGgkdg~~ 216 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ----LRTTFIGHSGYVNTVTVSPDG-SLCASGGKDGEA 216 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc----hhhccccccccEEEEEECCCC-CEEecCCCCceE
Confidence 433 37889999999984 4899999999999999999988 788999999999999999965 999999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
.+||++..+ -++...+...|.+++|+|+..+ |+.+-..+|+||++.+-
T Consensus 217 ~LwdL~~~k-------------------------~lysl~a~~~v~sl~fspnryw-L~~at~~sIkIwdl~~~ 264 (315)
T KOG0279|consen 217 MLWDLNEGK-------------------------NLYSLEAFDIVNSLCFSPNRYW-LCAATATSIKIWDLESK 264 (315)
T ss_pred EEEEccCCc-------------------------eeEeccCCCeEeeEEecCCcee-EeeccCCceEEEeccch
Confidence 999999874 2444454568999999999864 44455556999998653
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.2e-36 Score=297.47 Aligned_cols=210 Identities=23% Similarity=0.423 Sum_probs=195.3
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.|+|..++|+|+. ++|+++|+|++|++|.+.+ ..++..++||..+|+++.
T Consensus 443 ~~~~L~GH~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t---------------------~s~~V~y~GH~~PVwdV~ 500 (707)
T KOG0263|consen 443 TSRTLYGHSGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDT---------------------WSCLVIYKGHLAPVWDVQ 500 (707)
T ss_pred eeEEeecCCCceeeeeecccc-cceeeccCCcceeeeeccc---------------------ceeEEEecCCCcceeeEE
Confidence 335699999999999999999 7888999999999999998 678888999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|.|- +||||+.|++-++|....... .+.+.+|.+.|.|++|+|+.. ++++||.|.+||+||+.++. .+..|
T Consensus 501 F~P~Gy-YFatas~D~tArLWs~d~~~P----lRifaghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~-~VRiF 573 (707)
T KOG0263|consen 501 FAPRGY-YFATASHDQTARLWSTDHNKP----LRIFAGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGN-SVRIF 573 (707)
T ss_pred ecCCce-EEEecCCCceeeeeecccCCc----hhhhcccccccceEEECCccc-ccccCCCCceEEEEEcCCCc-EEEEe
Confidence 999998 999999999999999876433 467999999999999999998 99999999999999999996 78889
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.+|.++|.+++|+|.| .+|++|+.||.|++||+.++. ++..+.+|++.|+++.|+.++ .+||+||.|++|++||
T Consensus 574 ~GH~~~V~al~~Sp~G-r~LaSg~ed~~I~iWDl~~~~----~v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 574 TGHKGPVTALAFSPCG-RYLASGDEDGLIKIWDLANGS----LVKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVRLWD 647 (707)
T ss_pred cCCCCceEEEEEcCCC-ceEeecccCCcEEEEEcCCCc----chhhhhcccCceeEEEEecCC-CEEEecCCCCeEEEEE
Confidence 9999999999999999 999999999999999999988 899999999999999999955 9999999999999999
Q ss_pred CCCCC
Q 039302 401 LSLEK 405 (479)
Q Consensus 401 l~~~~ 405 (479)
+....
T Consensus 648 ~~~~~ 652 (707)
T KOG0263|consen 648 LTKVI 652 (707)
T ss_pred chhhc
Confidence 98764
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-34 Score=254.24 Aligned_cols=247 Identities=20% Similarity=0.287 Sum_probs=210.2
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.--...|..++|+|.+ +++|+|+-|....||++....+.. .......+.+|.+-+.|+.|-+++
T Consensus 94 pl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ls~~d~~g---------------~~~v~r~l~gHtgylScC~f~dD~ 157 (343)
T KOG0286|consen 94 PLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYPLSTRDAEG---------------NVRVSRELAGHTGYLSCCRFLDDN 157 (343)
T ss_pred ecCceeEEEEEECCCC-CeEEecCcCceeEEEecccccccc---------------cceeeeeecCccceeEEEEEcCCC
Confidence 3346789999999999 899999999999999998632111 134456789999999999999854
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.|+||+.|.++.+||+.++.. ...|.+|.+.|.++.++|...+.|++|+.|++.+|||+|.+. ++++|.+|..
T Consensus 158 --~ilT~SGD~TCalWDie~g~~----~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghes 230 (343)
T KOG0286|consen 158 --HILTGSGDMTCALWDIETGQQ----TQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHES 230 (343)
T ss_pred --ceEecCCCceEEEEEcccceE----EEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeeccccc
Confidence 799999999999999998765 356899999999999999555599999999999999999995 8999999999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
.||+++|.|+| .-|++|++|++.++||+|..+ .+..+.. -..+|++++|+-. +++|.+|..|..+.+||.-.
T Consensus 231 DINsv~ffP~G-~afatGSDD~tcRlyDlRaD~----~~a~ys~~~~~~gitSv~FS~S-GRlLfagy~d~~c~vWDtlk 304 (343)
T KOG0286|consen 231 DINSVRFFPSG-DAFATGSDDATCRLYDLRADQ----ELAVYSHDSIICGITSVAFSKS-GRLLFAGYDDFTCNVWDTLK 304 (343)
T ss_pred ccceEEEccCC-CeeeecCCCceeEEEeecCCc----EEeeeccCcccCCceeEEEccc-ccEEEeeecCCceeEeeccc
Confidence 99999999999 899999999999999999987 5666653 3468999999984 59999999999999999876
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
.... ..+..|. ..|+++..+|+| ..+++++.|. ++||.
T Consensus 305 ~e~v----------------------g~L~GHe--NRvScl~~s~DG-~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 305 GERV----------------------GVLAGHE--NRVSCLGVSPDG-MAVATGSWDSTLRIWA 343 (343)
T ss_pred cceE----------------------EEeeccC--CeeEEEEECCCC-cEEEecchhHheeecC
Confidence 6321 3344444 579999999999 5899999998 88883
No 12
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=6.2e-36 Score=294.38 Aligned_cols=269 Identities=24% Similarity=0.317 Sum_probs=221.4
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc-ccc------cccc---cccCCCCCccccCCCcEEecCC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHL-NAL------AESE---TVAGHGAPQVLNQSPLVKFGGH 232 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~------~~~~---~~~~~~~~~~~~~~~~~~~~~h 232 (479)
.....-...++|+.|++++ .++|.|-.|..|++|.+.... ... .... .................++.||
T Consensus 372 YT~~nt~~~v~ca~fSdds-smlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 372 YTFHNTYQGVTCAEFSDDS-SMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEcCCcceeEeecCCc-chhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 4444555789999999999 699999999999999998521 011 0010 0000011111123345568999
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
.++|+.+.|+|+.+ +|++|+.|++|++|.+.+.... ..+.||..+|.+++|+|.|- +|||+|.|++.++|....
T Consensus 451 ~GPVyg~sFsPd~r-fLlScSED~svRLWsl~t~s~~----V~y~GH~~PVwdV~F~P~Gy-YFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 451 SGPVYGCSFSPDRR-FLLSCSEDSSVRLWSLDTWSCL----VIYKGHLAPVWDVQFAPRGY-YFATASHDQTARLWSTDH 524 (707)
T ss_pred CCceeeeeeccccc-ceeeccCCcceeeeecccceeE----EEecCCCcceeeEEecCCce-EEEecCCCceeeeeeccc
Confidence 99999999999998 9999999999999999885542 34779999999999999987 999999999999999988
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
.. ++..+.+|.+.|.|++|+|+. +++|+||.|.+|++||+.++. .++.|.||.++|++++|+| ++.+|++|+.
T Consensus 525 ~~-PlRifaghlsDV~cv~FHPNs-~Y~aTGSsD~tVRlWDv~~G~----~VRiF~GH~~~V~al~~Sp-~Gr~LaSg~e 597 (707)
T KOG0263|consen 525 NK-PLRIFAGHLSDVDCVSFHPNS-NYVATGSSDRTVRLWDVSTGN----SVRIFTGHKGPVTALAFSP-CGRYLASGDE 597 (707)
T ss_pred CC-chhhhcccccccceEEECCcc-cccccCCCCceEEEEEcCCCc----EEEEecCCCCceEEEEEcC-CCceEeeccc
Confidence 65 888999999999999999999 999999999999999999998 7999999999999999999 5599999999
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
||.|+|||+..+... ..++.|. ..|.++.|+.++. +||+++.|+ |++|++...
T Consensus 598 d~~I~iWDl~~~~~v----------------------~~l~~Ht--~ti~SlsFS~dg~-vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLV----------------------KQLKGHT--GTIYSLSFSRDGN-VLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcEEEEEcCCCcch----------------------hhhhccc--CceeEEEEecCCC-EEEecCCCCeEEEEEchhh
Confidence 999999999987432 2345552 4699999999995 888888887 999998765
No 13
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-34 Score=252.63 Aligned_cols=256 Identities=21% Similarity=0.315 Sum_probs=208.6
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
...++.+|...|+.+..++++ +++.+++.|+++++||+.. +++...|.||...|.+++
T Consensus 55 ~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~lrlWDl~~---------------------g~~t~~f~GH~~dVlsva 112 (315)
T KOG0279|consen 55 PVRRLTGHSHFVSDVVLSSDG-NFALSASWDGTLRLWDLAT---------------------GESTRRFVGHTKDVLSVA 112 (315)
T ss_pred eeeeeeccceEecceEEccCC-ceEEeccccceEEEEEecC---------------------CcEEEEEEecCCceEEEE
Confidence 345888999999999999999 7888999999999999998 688899999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
|++++. +|+||+.|.+|++|++....... ..-.++..-|+|+.|+|+. ..+|+++|.|++|++||+++.+ ....
T Consensus 113 ~s~dn~-qivSGSrDkTiklwnt~g~ck~t---~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-l~~~ 187 (315)
T KOG0279|consen 113 FSTDNR-QIVSGSRDKTIKLWNTLGVCKYT---IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-LRTT 187 (315)
T ss_pred ecCCCc-eeecCCCcceeeeeeecccEEEE---EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-hhhc
Confidence 999998 99999999999999987643322 1122337889999999994 3399999999999999999985 6778
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
+.+|++.++.+.++|+| .++++|+.||.+.+||++..+ .+..+. |...|.+++|+|+. ..|+.+ .+..|+||
T Consensus 188 ~~gh~~~v~t~~vSpDG-slcasGgkdg~~~LwdL~~~k----~lysl~-a~~~v~sl~fspnr-ywL~~a-t~~sIkIw 259 (315)
T KOG0279|consen 188 FIGHSGYVNTVTVSPDG-SLCASGGKDGEAMLWDLNEGK----NLYSLE-AFDIVNSLCFSPNR-YWLCAA-TATSIKIW 259 (315)
T ss_pred cccccccEEEEEECCCC-CEEecCCCCceEEEEEccCCc----eeEecc-CCCeEeeEEecCCc-eeEeec-cCCceEEE
Confidence 89999999999999999 999999999999999999988 677665 78999999999954 555555 45669999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEE--eecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLF--IHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~--~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
|+......++.. +...- ...+.....+++|+++|..|++.-.++.|++|.+.
T Consensus 260 dl~~~~~v~~l~-----------------~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 260 DLESKAVVEELK-----------------LDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred eccchhhhhhcc-----------------ccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 999876543211 11111 11111236789999999877766666669999874
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1e-36 Score=278.32 Aligned_cols=248 Identities=26% Similarity=0.462 Sum_probs=213.8
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
++......-+..|+.|+|.|+| +.|++|+..|.+.+|+... ......++.|..+|.+|
T Consensus 87 f~h~s~NKvkc~V~~v~WtPeG-RRLltgs~SGEFtLWNg~~---------------------fnFEtilQaHDs~Vr~m 144 (464)
T KOG0284|consen 87 FVHTSSNKVKCPVNVVRWTPEG-RRLLTGSQSGEFTLWNGTS---------------------FNFETILQAHDSPVRTM 144 (464)
T ss_pred eEeccccccccceeeEEEcCCC-ceeEeecccccEEEecCce---------------------eeHHHHhhhhcccceeE
Confidence 4444445667899999999999 5667899999999999865 34445577899999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
.|++++. +++||+.+|.|++|+.+.... ..+.+ |...|++++|+|++. .|++||.||+|+|||.+..+ .-.
T Consensus 145 ~ws~~g~-wmiSgD~gG~iKyWqpnmnnV-----k~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~k-ee~ 216 (464)
T KOG0284|consen 145 KWSHNGT-WMISGDKGGMIKYWQPNMNNV-----KIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPK-EER 216 (464)
T ss_pred EEccCCC-EEEEcCCCceEEecccchhhh-----HHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCc-hhh
Confidence 9999998 999999999999999865433 33444 458999999999887 99999999999999999886 455
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|.-.|.+++|+|.. .+||+||.|..|++||.|++. ++.++.+|+..|..+.|+|++ ++|+|+|.|..+++
T Consensus 217 vL~GHgwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~----cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 217 VLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGS----CLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKV 290 (464)
T ss_pred eeccCCCCcceeccCCcc-ceeEEccCCceeEeecCCCcc----hhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEE
Confidence 679999999999999988 899999999999999999999 899999999999999999977 99999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
+|++..++ ++...+| +.|+++.|||-.+.|+++++.|| |..|.+.
T Consensus 291 ~DiR~mkE-------------------------l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~ 337 (464)
T KOG0284|consen 291 FDIRTMKE-------------------------LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG 337 (464)
T ss_pred EehhHhHH-------------------------HHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence 99996642 2333333 57999999999999999999999 8888765
No 15
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.5e-34 Score=250.31 Aligned_cols=254 Identities=15% Similarity=0.206 Sum_probs=216.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|+++.|+++. +.|+++|.||.+.|||.-+ ......+.-...-|..++|+
T Consensus 49 r~LkGH~~Ki~~~~ws~Ds-r~ivSaSqDGklIvWDs~T---------------------tnK~haipl~s~WVMtCA~s 106 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDS-RRIVSASQDGKLIVWDSFT---------------------TNKVHAIPLPSSWVMTCAYS 106 (343)
T ss_pred EEecccccceeeeEecCCc-CeEEeeccCCeEEEEEccc---------------------ccceeEEecCceeEEEEEEC
Confidence 5688999999999999999 6788999999999999877 34455666677899999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCc--cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDAT--WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|.+. ++|.|+.|....||++.+... .....+.+.+|++.+.|+.|-+++ .|+++|.|.+..+||+.+++ .+..+
T Consensus 107 PSg~-~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~-~~~~f 182 (343)
T KOG0286|consen 107 PSGN-FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQ-QTQVF 182 (343)
T ss_pred CCCC-eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccce-EEEEe
Confidence 9998 999999999999999986522 222346689999999999999855 69999999999999999996 78889
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.+|.+.|.+++++|...+.+++|+-|+..+|||+|.+. ++++|.+|...|++|.|.|++ .-|++||.|+++++||
T Consensus 183 ~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~----c~qtF~ghesDINsv~ffP~G-~afatGSDD~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ----CVQTFEGHESDINSVRFFPSG-DAFATGSDDATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcc----eeEeecccccccceEEEccCC-CeeeecCCCceeEEEe
Confidence 99999999999999555999999999999999999998 899999999999999999965 9999999999999999
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
++.... -.+|.|.... +|++++|+..|..|++...+-++++|+.-.-
T Consensus 258 lRaD~~-----------------------~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~ 305 (343)
T KOG0286|consen 258 LRADQE-----------------------LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG 305 (343)
T ss_pred ecCCcE-----------------------EeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc
Confidence 998752 2344454332 7999999999975555444444999997543
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.2e-34 Score=265.62 Aligned_cols=246 Identities=25% Similarity=0.465 Sum_probs=214.5
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.-...|++++|+.+| .+||+|+.+|.++||+... ..+.++..|+++|++|.|+..+.
T Consensus 233 ~~nkdVT~L~Wn~~G-~~LatG~~~G~~riw~~~G----------------------~l~~tl~~HkgPI~slKWnk~G~ 289 (524)
T KOG0273|consen 233 PSNKDVTSLDWNNDG-TLLATGSEDGEARIWNKDG----------------------NLISTLGQHKGPIFSLKWNKKGT 289 (524)
T ss_pred CccCCcceEEecCCC-CeEEEeecCcEEEEEecCc----------------------hhhhhhhccCCceEEEEEcCCCC
Confidence 345689999999999 8999999999999999875 56778889999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCCc-------------------------------------cccCCCCcccCCCcEEEEEEC
Q 039302 247 GRLVSGDCNSCIHLWEPASDAT-------------------------------------WNVDPNPFIGHAASVEDLQWS 289 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~-------------------------------------~~~~~~~~~~h~~~V~~l~~s 289 (479)
+|++++.||++.+||..++.. ...+..++.+|.++|++|.|+
T Consensus 290 -yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n 368 (524)
T KOG0273|consen 290 -YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWN 368 (524)
T ss_pred -EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEEC
Confidence 999999999999999865421 112345577899999999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCC--------CcEEEEEeCCCeEEEEeCCCCCCCC
Q 039302 290 PTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLA--------SCLLASGSDDGTFSIHDLRLLKGGD 361 (479)
Q Consensus 290 p~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~--------~~~l~sgs~dg~i~iwDlr~~~~~~ 361 (479)
|.+. +|++||.|++++||...... +...+.+|...|..+.|+|.+ ...|++++.|++|++||+..+.
T Consensus 369 ~tg~-LLaS~SdD~TlkiWs~~~~~-~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv--- 443 (524)
T KOG0273|consen 369 PTGS-LLASCSDDGTLKIWSMGQSN-SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGV--- 443 (524)
T ss_pred CCCc-eEEEecCCCeeEeeecCCCc-chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCc---
Confidence 9999 99999999999999988764 778899999999999999876 3589999999999999999998
Q ss_pred ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCe
Q 039302 362 SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDL 441 (479)
Q Consensus 362 ~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V 441 (479)
++++|..|..+|++++|+|++ .++|+|+.||.|+||+++.. +++....+...|
T Consensus 444 -~i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~-------------------------~l~~s~~~~~~I 496 (524)
T KOG0273|consen 444 -PIHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTG-------------------------KLVKSYQGTGGI 496 (524)
T ss_pred -eeEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccch-------------------------heeEeecCCCeE
Confidence 899999999999999999965 99999999999999999987 456666666679
Q ss_pred eeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 442 KELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 442 ~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
..++|+..+..+.++.+++.+.+.+++
T Consensus 497 fel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 497 FELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred EEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999766666666668887764
No 17
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.3e-32 Score=235.58 Aligned_cols=284 Identities=21% Similarity=0.351 Sum_probs=216.9
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe-cCCCCceEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF-GGHKDEGYA 238 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~ 238 (479)
.+...+.+|++.|..++|+|-...+||||+.|..|+||+.... . ...+...+ .+|+..|..
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~-~-----------------s~~ck~vld~~hkrsVRs 66 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSG-D-----------------SWTCKTVLDDGHKRSVRS 66 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCC-C-----------------cEEEEEeccccchheeee
Confidence 3456788999999999999983379999999999999999851 1 11222222 379999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--ce
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SA 316 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~--~~ 316 (479)
++|+|.++ +|++|+.|.++.||.-..+.... ...+.||...|.|++|+++|. +||+|+.|+.|-||.+.... .+
T Consensus 67 vAwsp~g~-~La~aSFD~t~~Iw~k~~~efec--v~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec 142 (312)
T KOG0645|consen 67 VAWSPHGR-YLASASFDATVVIWKKEDGEFEC--VATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFEC 142 (312)
T ss_pred eeecCCCc-EEEEeeccceEEEeecCCCceeE--EeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEE
Confidence 99999999 99999999999999876543322 467899999999999999999 99999999999999998553 26
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
...+..|...|..+.|+|.. .+|++++.|.+|++|+-.. .....++.++.+|...|.+++|+|.+ ..|++++.|++|
T Consensus 143 ~aVL~~HtqDVK~V~WHPt~-dlL~S~SYDnTIk~~~~~~-dddW~c~~tl~g~~~TVW~~~F~~~G-~rl~s~sdD~tv 219 (312)
T KOG0645|consen 143 IAVLQEHTQDVKHVIWHPTE-DLLFSCSYDNTIKVYRDED-DDDWECVQTLDGHENTVWSLAFDNIG-SRLVSCSDDGTV 219 (312)
T ss_pred EeeeccccccccEEEEcCCc-ceeEEeccCCeEEEEeecC-CCCeeEEEEecCccceEEEEEecCCC-ceEEEecCCcce
Confidence 77789999999999999988 8999999999999998774 22366899999999999999999965 999999999999
Q ss_pred EEEECCCCCChHHH-HHHh-----h---hccc--------ccCCCCCCCCceEE-eec-CCCCeeeEEEeCCCCcEEEEE
Q 039302 397 TIWDLSLEKDEEEE-AEFK-----A---KTRE--------QVNAPEDLPPQLLF-IHQ-GQKDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 397 ~iwdl~~~~~~~~~-~~~~-----~---~~~~--------~~~~~~~~p~~l~~-~h~-g~~~V~~v~w~p~~~~ll~s~ 457 (479)
+||-+...-..... +.+. + .... ....+......++. .+. +...|++++|+|..+.+|+|+
T Consensus 220 ~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~ 299 (312)
T KOG0645|consen 220 SIWRLYTDLSGMHSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASG 299 (312)
T ss_pred EeeeeccCcchhcccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeec
Confidence 99995432111000 0000 0 0000 00000011111111 112 223799999999777899999
Q ss_pred cCCC-ceEEeee
Q 039302 458 AADG-FNILMPS 468 (479)
Q Consensus 458 ~~dg-i~iw~~~ 468 (479)
++|| +++|.+.
T Consensus 300 ~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 300 GDDGIVNFWELE 311 (312)
T ss_pred CCCceEEEEEec
Confidence 9999 9999863
No 18
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=253.88 Aligned_cols=245 Identities=21% Similarity=0.312 Sum_probs=217.2
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|.|+++-|-+ ..+|||+.|++++|||+.+ ++...++.||...|..+++|
T Consensus 145 rVi~gHlgWVr~vavdP~n-~wf~tgs~DrtikIwDlat---------------------g~LkltltGhi~~vr~vavS 202 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGN-EWFATGSADRTIKIWDLAT---------------------GQLKLTLTGHIETVRGVAVS 202 (460)
T ss_pred hhhhhccceEEEEeeCCCc-eeEEecCCCceeEEEEccc---------------------CeEEEeecchhheeeeeeec
Confidence 4567999999999999987 8999999999999999998 78889999999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+..+ +|.+++.|+.|+.||+...+. ++.+.||-+.|.|++.+|.-. ++++|+.|.++++||+|+.. .+..+.+
T Consensus 203 ~rHp-YlFs~gedk~VKCwDLe~nkv----IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~-~V~~l~G 275 (460)
T KOG0285|consen 203 KRHP-YLFSAGEDKQVKCWDLEYNKV----IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA-SVHVLSG 275 (460)
T ss_pred ccCc-eEEEecCCCeeEEEechhhhh----HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccc-eEEEecC
Confidence 9999 999999999999999987544 467899999999999999998 99999999999999999985 7889999
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...|.++.+.|.+ ..+++|+.|++|++||++.++ .+.++..|+..|.+++.+|.. +.||++|.|+ |+-|++.
T Consensus 276 H~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agk----t~~tlt~hkksvral~lhP~e-~~fASas~dn-ik~w~~p 348 (460)
T KOG0285|consen 276 HTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGK----TMITLTHHKKSVRALCLHPKE-NLFASASPDN-IKQWKLP 348 (460)
T ss_pred CCCcceeEEeecCC-CceEEecCCceEEEeeeccCc----eeEeeecccceeeEEecCCch-hhhhccCCcc-ceeccCC
Confidence 99999999999988 789999999999999999998 788899999999999999955 8999998875 8889998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.+.. +....||. -|+.++.+.++ ++++|+++| +.+|+..+.
T Consensus 349 ~g~f-------------------------~~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg 391 (460)
T KOG0285|consen 349 EGEF-------------------------LQNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSG 391 (460)
T ss_pred ccch-------------------------hhccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcC
Confidence 7731 11123444 58888888774 889999998 888887664
No 19
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=1.5e-32 Score=254.97 Aligned_cols=269 Identities=23% Similarity=0.380 Sum_probs=225.7
Q ss_pred CCCcccC-CceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeE
Q 039302 84 GLVRNEF-PYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQ 162 (479)
Q Consensus 84 ~~~~~~~-~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~ 162 (479)
..+|.+| |++..+|| | +...+.|+||+++.-....... +...|.+
T Consensus 126 EVnRaRymPQnp~iVA-t---~t~~~dv~Vfd~tk~~s~~~~~-----------------------------~~~~Pdl- 171 (422)
T KOG0264|consen 126 EVNRARYMPQNPNIVA-T---KTSSGDVYVFDYTKHPSKPKAS-----------------------------GECRPDL- 171 (422)
T ss_pred cchhhhhCCCCCcEEE-e---cCCCCCEEEEEeccCCCccccc-----------------------------ccCCCce-
Confidence 3467776 88888887 3 4567899999996422211100 0124555
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
++.+|+++-+.+.|+++....+++++.|++|++||++...... ....+...+.+|...|..++|+
T Consensus 172 -~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~--------------~~~~p~~~~~~h~~~VeDV~~h 236 (422)
T KOG0264|consen 172 -RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKED--------------KVVDPKTIFSGHEDVVEDVAWH 236 (422)
T ss_pred -EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCC--------------ccccceEEeecCCcceehhhcc
Confidence 8999999999999999998899999999999999998743321 0256778899999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+.....|++++.|+.+.|||+++. .........+|.+.|+|++|+|.+.++||+||.|++|.+||+|..+.++.++.+
T Consensus 237 ~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~ 314 (422)
T KOG0264|consen 237 PLHEDLFGSVGDDGKLMIWDTRSN--TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEG 314 (422)
T ss_pred ccchhhheeecCCCeEEEEEcCCC--CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccC
Confidence 999889999999999999999973 222346678999999999999999999999999999999999999889999999
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------CceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----------DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----------~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
|...|.+|.|+|.....||+++.|+.+.|||+...... ..++..-.||+..|..+.|+|+.+..|+|.+.
T Consensus 315 H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Svae 394 (422)
T KOG0264|consen 315 HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAE 394 (422)
T ss_pred CCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecC
Confidence 99999999999999999999999999999999765432 23556778899999999999999999999999
Q ss_pred CCcEEEEECCC
Q 039302 393 DNQLTIWDLSL 403 (479)
Q Consensus 393 Dg~I~iwdl~~ 403 (479)
|+.+.||.+..
T Consensus 395 DN~LqIW~~s~ 405 (422)
T KOG0264|consen 395 DNILQIWQMAE 405 (422)
T ss_pred CceEEEeeccc
Confidence 99999999974
No 20
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=2e-33 Score=251.91 Aligned_cols=311 Identities=20% Similarity=0.303 Sum_probs=243.3
Q ss_pred ChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEee---cCCCCCCceEEEEEeeecCCccccCCCCCCCCC
Q 039302 57 DPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGS---QAEKPSWNSIGVFKVSNISGKRRELVPNKPATG 133 (479)
Q Consensus 57 d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt---~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~ 133 (479)
=|.+|..++...-.|-|=-+-.-.-+ ++.......|++-.- --+|.++|.|.||+...
T Consensus 166 ~pki~~di~~idsNWr~Gr~~~~rin---c~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~---------------- 226 (499)
T KOG0281|consen 166 YPKIIQDIETIESNWRCGRHLLQRIN---CRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNS---------------- 226 (499)
T ss_pred hHHHHHHHhhhhcchhccceeeeeec---CCcccCCceEEEEecchhhhcccccCceEEecccc----------------
Confidence 36889999999999988644432221 111111233332211 01356899999997731
Q ss_pred CCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCccccccccccc
Q 039302 134 DEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVA 213 (479)
Q Consensus 134 ~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~ 213 (479)
-.....+.||+|.|.|+.|.. .++++||.|.+|+|||+++
T Consensus 227 -------------------------~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~t------------ 266 (499)
T KOG0281|consen 227 -------------------------LECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNT------------ 266 (499)
T ss_pred -------------------------HHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccC------------
Confidence 223356889999999999975 6999999999999999998
Q ss_pred CCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC
Q 039302 214 GHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES 293 (479)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~ 293 (479)
++++.++-+|...|..+.|+. ++++|++.|.+|.+||+..... ......+.||..+|+.+.|+ .+
T Consensus 267 ---------ge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~-it~rrVLvGHrAaVNvVdfd--~k 331 (499)
T KOG0281|consen 267 ---------GEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD-ITLRRVLVGHRAAVNVVDFD--DK 331 (499)
T ss_pred ---------CchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH-HHHHHHHhhhhhheeeeccc--cc
Confidence 899999999999999999985 5999999999999999977543 22345688999999999997 44
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP 373 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~ 373 (479)
+++++|.|.+|++|++.+.. .+.++.+|..+|.|+.+.. .++++|+.|.+|++||+..+. ++..+.+|..-
T Consensus 332 -yIVsASgDRTikvW~~st~e-fvRtl~gHkRGIAClQYr~---rlvVSGSSDntIRlwdi~~G~----cLRvLeGHEeL 402 (499)
T KOG0281|consen 332 -YIVSASGDRTIKVWSTSTCE-FVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGA----CLRVLEGHEEL 402 (499)
T ss_pred -eEEEecCCceEEEEecccee-eehhhhcccccceehhccC---eEEEecCCCceEEEEeccccH----HHHHHhchHHh
Confidence 99999999999999999986 8889999999999999873 899999999999999999998 89999999999
Q ss_pred eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
|.+|.|+. ..+++|+.||+|+|||+....++.. ....+....+..|. ..|..+.|..- .+
T Consensus 403 vRciRFd~---krIVSGaYDGkikvWdl~aaldpra-------------~~~~~Cl~~lv~hs--gRVFrLQFD~f--qI 462 (499)
T KOG0281|consen 403 VRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRA-------------PASTLCLRTLVEHS--GRVFRLQFDEF--QI 462 (499)
T ss_pred hhheeecC---ceeeeccccceEEEEecccccCCcc-------------cccchHHHhhhhcc--ceeEEEeecce--EE
Confidence 99999974 7899999999999999988754310 01111112223333 47999999764 36
Q ss_pred EEEEcCCCceEEeeecc
Q 039302 454 IVSTAADGFNILMPSNI 470 (479)
Q Consensus 454 l~s~~~dgi~iw~~~~~ 470 (479)
++++.++.|.||++.+.
T Consensus 463 vsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 463 ISSSHDDTILIWDFLNG 479 (499)
T ss_pred EeccCCCeEEEEEcCCC
Confidence 66666667999999776
No 21
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.8e-32 Score=240.47 Aligned_cols=257 Identities=19% Similarity=0.296 Sum_probs=214.0
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.|++ .+.+|++.|++++|+|+| .+||||+.|..|.+|++.. ..+....+++|++.|.
T Consensus 38 ap~m--~l~gh~geI~~~~F~P~g-s~~aSgG~Dr~I~LWnv~g--------------------dceN~~~lkgHsgAVM 94 (338)
T KOG0265|consen 38 APIM--LLPGHKGEIYTIKFHPDG-SCFASGGSDRAIVLWNVYG--------------------DCENFWVLKGHSGAVM 94 (338)
T ss_pred chhh--hcCCCcceEEEEEECCCC-CeEeecCCcceEEEEeccc--------------------cccceeeeccccceeE
Confidence 4554 788999999999999988 7999999999999999776 3455677889999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
.+.|.+++. .|++++.|.+|+.||+.+++. .+.+.+|..-|+.+.-+.-|..++.+++.||++++||+|+.. ++
T Consensus 95 ~l~~~~d~s-~i~S~gtDk~v~~wD~~tG~~----~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~-~~ 168 (338)
T KOG0265|consen 95 ELHGMRDGS-HILSCGTDKTVRGWDAETGKR----IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE-AI 168 (338)
T ss_pred eeeeccCCC-EEEEecCCceEEEEeccccee----eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccc-hh
Confidence 999999998 999999999999999999766 467899999999999777788789999999999999999875 55
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+.+. ....++++.|+..+ ..+.+|+-|+.|++||+|... ...++.+|..+|+.+..+|.+ .++.+-+.|++++
T Consensus 169 ~t~~-~kyqltAv~f~d~s-~qv~sggIdn~ikvWd~r~~d----~~~~lsGh~DtIt~lsls~~g-s~llsnsMd~tvr 241 (338)
T KOG0265|consen 169 KTFE-NKYQLTAVGFKDTS-DQVISGGIDNDIKVWDLRKND----GLYTLSGHADTITGLSLSRYG-SFLLSNSMDNTVR 241 (338)
T ss_pred hccc-cceeEEEEEecccc-cceeeccccCceeeeccccCc----ceEEeecccCceeeEEeccCC-CccccccccceEE
Confidence 5443 35679999999988 889999999999999999988 799999999999999999965 9999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC--CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ--KDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~--~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+||++..... .....+...|.+. .....++|+|++. .+.+++.|. +.+|+...
T Consensus 242 vwd~rp~~p~------------------~R~v~if~g~~hnfeknlL~cswsp~~~-~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 242 VWDVRPFAPS------------------QRCVKIFQGHIHNFEKNLLKCSWSPNGT-KITAGSADRFVYVWDTTS 297 (338)
T ss_pred EEEecccCCC------------------CceEEEeecchhhhhhhcceeeccCCCC-ccccccccceEEEeeccc
Confidence 9999865321 0111222333322 2467889999996 555555555 99998865
No 22
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.3e-32 Score=250.76 Aligned_cols=265 Identities=22% Similarity=0.393 Sum_probs=212.1
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC----CC
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG----HK 233 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~ 233 (479)
.|.-..+...|+.+|.+.+|.|....++|+|+.+-..++|++........... ..+.-....+ .+
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~-----------~lrh~~~~~~~s~~~n 235 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQL-----------VLRHCIREGGKSVPSN 235 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhh-----------hhhhhhhhhcccCCcc
Confidence 44444566779999999999998866999999999999999985211110000 0000011111 23
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
..|++|+|+.+|. .||+|+.||.++||+.... . ...+..|+++|.++.|+..|. ++++++.||++.|||..++
T Consensus 236 kdVT~L~Wn~~G~-~LatG~~~G~~riw~~~G~-l----~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 236 KDVTSLDWNNDGT-LLATGSEDGEARIWNKDGN-L----ISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTG 308 (524)
T ss_pred CCcceEEecCCCC-eEEEeecCcEEEEEecCch-h----hhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCc
Confidence 5899999999998 9999999999999998553 2 256888999999999999998 9999999999999998442
Q ss_pred ----------------------------------------CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 039302 314 ----------------------------------------KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 353 (479)
Q Consensus 314 ----------------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD 353 (479)
+.|+.++.+|.+.|++|.|+|.+ .+|+++++|++++||.
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTG-SLLASCSDDGTLKIWS 387 (524)
T ss_pred eEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCC-ceEEEecCCCeeEeee
Confidence 12456677899999999999999 9999999999999999
Q ss_pred CCCCCCCCceEEEeecCCCCeEEEEEeCCC--------CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCC
Q 039302 354 LRLLKGGDSVVAHFEYHKHPVTSIEWSPHE--------GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPE 425 (479)
Q Consensus 354 lr~~~~~~~~~~~~~~h~~~I~~v~~sp~~--------~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 425 (479)
+.... .+..+.+|...|..+.|+|.+ +..|++++.|++|++||+..+..
T Consensus 388 ~~~~~----~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~------------------- 444 (524)
T KOG0273|consen 388 MGQSN----SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP------------------- 444 (524)
T ss_pred cCCCc----chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce-------------------
Confidence 88877 788999999999999999965 35899999999999999988741
Q ss_pred CCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 426 DLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 426 ~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
...+. .++.+|.+|+|+|++. ++++|+.|| |+||.+...
T Consensus 445 ---i~~f~--kH~~pVysvafS~~g~-ylAsGs~dg~V~iws~~~~ 484 (524)
T KOG0273|consen 445 ---IHTLM--KHQEPVYSVAFSPNGR-YLASGSLDGCVHIWSTKTG 484 (524)
T ss_pred ---eEeec--cCCCceEEEEecCCCc-EEEecCCCCeeEeccccch
Confidence 12222 3346899999999995 899999998 999987543
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-32 Score=247.54 Aligned_cols=254 Identities=24% Similarity=0.407 Sum_probs=226.5
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.|-+..++.+|...|+++-|+|.- .+++++++|++|++||+.+ ++....++||...+.
T Consensus 97 Rp~l~~~l~g~r~~vt~v~~hp~~-~~v~~as~d~tikv~D~~t---------------------g~~e~~LrGHt~sv~ 154 (406)
T KOG0295|consen 97 RPNLVQKLAGHRSSVTRVIFHPSE-ALVVSASEDATIKVFDTET---------------------GELERSLRGHTDSVF 154 (406)
T ss_pred CCCchhhhhccccceeeeeeccCc-eEEEEecCCceEEEEEccc---------------------hhhhhhhhcccccee
Confidence 456667899999999999999988 7899999999999999998 677889999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
.++|+..|. +|++++.|-.+.+||..+.... .+...+|.-.|.+++|-|.+. ++++|+.|.+|++|++.++- ++
T Consensus 155 di~~~a~Gk-~l~tcSsDl~~~LWd~~~~~~c---~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~-cv 228 (406)
T KOG0295|consen 155 DISFDASGK-YLATCSSDLSAKLWDFDTFFRC---IKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGY-CV 228 (406)
T ss_pred EEEEecCcc-EEEecCCccchhheeHHHHHHH---HHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccce-eE
Confidence 999999998 9999999999999999763221 356788999999999999997 99999999999999999985 89
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC--------------C
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH--------------E 383 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~--------------~ 383 (479)
.++.+|...|..++.+.+| .++|+++.|.+|++|-+.+.+ +...++.|..+|-+++|.|. +
T Consensus 229 ~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl~vW~~~t~~----~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~ 303 (406)
T KOG0295|consen 229 KTFPGHSEWVRMVRVNQDG-TIIASCSNDQTLRVWVVATKQ----CKAELREHEHPVECIAWAPESSYPSISEATGSTNG 303 (406)
T ss_pred EeccCchHhEEEEEecCCe-eEEEecCCCceEEEEEeccch----hhhhhhccccceEEEEecccccCcchhhccCCCCC
Confidence 9999999999999999999 999999999999999999887 67889999999999999874 2
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
+.++.+++.|++|++||+.++. .++.-.||. .|.+++|||.|. +|+|+++|+
T Consensus 304 ~~~l~s~SrDktIk~wdv~tg~-------------------------cL~tL~ghdnwVr~~af~p~Gk-yi~ScaDDkt 357 (406)
T KOG0295|consen 304 GQVLGSGSRDKTIKIWDVSTGM-------------------------CLFTLVGHDNWVRGVAFSPGGK-YILSCADDKT 357 (406)
T ss_pred ccEEEeecccceEEEEeccCCe-------------------------EEEEEecccceeeeeEEcCCCe-EEEEEecCCc
Confidence 3599999999999999999984 344444454 799999999996 888899888
Q ss_pred ceEEeeecc
Q 039302 462 FNILMPSNI 470 (479)
Q Consensus 462 i~iw~~~~~ 470 (479)
++||++.+.
T Consensus 358 lrvwdl~~~ 366 (406)
T KOG0295|consen 358 LRVWDLKNL 366 (406)
T ss_pred EEEEEeccc
Confidence 999999886
No 24
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-32 Score=268.43 Aligned_cols=252 Identities=21% Similarity=0.339 Sum_probs=218.0
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.+..++..|.|+|..|.|+|.+ .++++|++|-.|+||++.. .+++.++.||-+-|..+
T Consensus 42 tli~rFdeHdGpVRgv~FH~~q-plFVSGGDDykIkVWnYk~---------------------rrclftL~GHlDYVRt~ 99 (1202)
T KOG0292|consen 42 TLIDRFDEHDGPVRGVDFHPTQ-PLFVSGGDDYKIKVWNYKT---------------------RRCLFTLLGHLDYVRTV 99 (1202)
T ss_pred hHHhhhhccCCccceeeecCCC-CeEEecCCccEEEEEeccc---------------------ceehhhhccccceeEEe
Confidence 3445778999999999999999 5899999999999999997 78999999999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc----
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---- 315 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---- 315 (479)
.|++.-+ .|+|+|.|.+|+||+..++... ..+.||...|.|.+|+|.+. +++|+|-|.+||+||+...+.
T Consensus 100 ~FHheyP-WIlSASDDQTIrIWNwqsr~~i----avltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 100 FFHHEYP-WILSASDDQTIRIWNWQSRKCI----AVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred eccCCCc-eEEEccCCCeEEEEeccCCceE----EEEecCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCC
Confidence 9999998 9999999999999999886653 55889999999999999988 999999999999999853210
Q ss_pred ------------------------eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC
Q 039302 316 ------------------------ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK 371 (479)
Q Consensus 316 ------------------------~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~ 371 (479)
....+.+|..+||.++|+|.- .+|++|++|..|++|.+...+ .-.+-+.++|.
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTl-pliVSG~DDRqVKlWrmnetK--aWEvDtcrgH~ 250 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTL-PLIVSGADDRQVKLWRMNETK--AWEVDTCRGHY 250 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCc-ceEEecCCcceeeEEEecccc--ceeehhhhccc
Confidence 123357899999999999999 899999999999999987665 23467889999
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCC
Q 039302 372 HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVP 451 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~ 451 (479)
+.|+++-|+|+. .++++.|+|++|+|||+..... --.|.+. +...+.++-||...
T Consensus 251 nnVssvlfhp~q-~lIlSnsEDksirVwDm~kRt~-----------------------v~tfrre-ndRFW~laahP~lN 305 (1202)
T KOG0292|consen 251 NNVSSVLFHPHQ-DLILSNSEDKSIRVWDMTKRTS-----------------------VQTFRRE-NDRFWILAAHPELN 305 (1202)
T ss_pred CCcceEEecCcc-ceeEecCCCccEEEEecccccc-----------------------eeeeecc-CCeEEEEEecCCcc
Confidence 999999999965 9999999999999999987642 1123333 45789999999984
Q ss_pred cEEEEEcCCCceEEeee
Q 039302 452 GMIVSTAADGFNILMPS 468 (479)
Q Consensus 452 ~ll~s~~~dgi~iw~~~ 468 (479)
|++++.+.|+.||++.
T Consensus 306 -LfAAgHDsGm~VFkle 321 (1202)
T KOG0292|consen 306 -LFAAGHDSGMIVFKLE 321 (1202)
T ss_pred -eeeeecCCceEEEEEc
Confidence 9999999999999885
No 25
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.6e-33 Score=259.72 Aligned_cols=252 Identities=21% Similarity=0.363 Sum_probs=211.2
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|+..|++++|+|...+||++|+.|+.|+||++-. ...++.+|.+|..+|.+++|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~--------------------~~~~lrtf~gH~k~Vrd~~~ 266 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD--------------------DRRCLRTFKGHRKPVRDASF 266 (503)
T ss_pred eeeccCCccccchhhhccceeeEEEecCCCceEEEEEEec--------------------Ccceehhhhcchhhhhhhhc
Confidence 4567899999999999995559999999999999999987 47899999999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
+..+. .|+|++.|+.|++||+.++.... .+. ....++|+.|+|++.+.|++|+.|+.|+.||+|+++ .++.+.
T Consensus 267 s~~g~-~fLS~sfD~~lKlwDtETG~~~~----~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k-vvqeYd 339 (503)
T KOG0282|consen 267 NNCGT-SFLSASFDRFLKLWDTETGQVLS----RFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK-VVQEYD 339 (503)
T ss_pred cccCC-eeeeeecceeeeeeccccceEEE----EEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH-HHHHHH
Confidence 99998 99999999999999999976522 221 245689999999998899999999999999999996 788888
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------------------------C------------
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----------------------------D------------ 361 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----------------------------~------------ 361 (479)
.|-+.|+.+.|-+++ ..+++.++|++++||+.+..-.. .
T Consensus 340 ~hLg~i~~i~F~~~g-~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~ 418 (503)
T KOG0282|consen 340 RHLGAILDITFVDEG-RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF 418 (503)
T ss_pred hhhhheeeeEEccCC-ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc
Confidence 999999999999999 89999999999999998754320 0
Q ss_pred --ceEEEeecCC--CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC
Q 039302 362 --SVVAHFEYHK--HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG 437 (479)
Q Consensus 362 --~~~~~~~~h~--~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g 437 (479)
..-..|++|. +.-..+.|||++ .+|++|..||.+.+||.++-+.. ..+..|.
T Consensus 419 r~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl~----------------------~~lkah~- 474 (503)
T KOG0282|consen 419 RLNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTKLV----------------------SKLKAHD- 474 (503)
T ss_pred ccCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhhhh----------------------hccccCC-
Confidence 0111233443 234578999955 99999999999999999887421 2334442
Q ss_pred CCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 438 QKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 438 ~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
..+..+.|||..+..+|+|+.+| |++|+
T Consensus 475 -~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 475 -QPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred -cceEEEEecCCCcceeEecccCceeEecC
Confidence 57999999999999999999999 99995
No 26
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.4e-31 Score=236.44 Aligned_cols=248 Identities=18% Similarity=0.293 Sum_probs=201.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+..|++.|.++..+|+. +++|||+.|...+||++.+ +..+..+.+|+..|+++.|+
T Consensus 58 ~tF~~H~~svFavsl~P~~-~l~aTGGgDD~AflW~~~~---------------------ge~~~eltgHKDSVt~~~Fs 115 (399)
T KOG0296|consen 58 VTFDKHTDSVFAVSLHPNN-NLVATGGGDDLAFLWDIST---------------------GEFAGELTGHKDSVTCCSFS 115 (399)
T ss_pred eehhhcCCceEEEEeCCCC-ceEEecCCCceEEEEEccC---------------------CcceeEecCCCCceEEEEEc
Confidence 5788999999999999955 8999999999999999998 56778899999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.++. +||||+.+|.|+||...++.... .+...-..+.-+.|+|.+. +|+.|+.||.+-+|.+.... ..+.+.+
T Consensus 116 hdgt-lLATGdmsG~v~v~~~stg~~~~----~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~-~~kv~~G 188 (399)
T KOG0296|consen 116 HDGT-LLATGDMSGKVLVFKVSTGGEQW----KLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA-LCKVMSG 188 (399)
T ss_pred cCce-EEEecCCCccEEEEEcccCceEE----EeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcc-eeeEecC
Confidence 9998 99999999999999998865532 2333456788899999887 99999999999999999863 5677899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC---------------------------------------C--
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---------------------------------------D-- 361 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---------------------------------------~-- 361 (479)
|+.++++-.|.|+| ..+++|..||+|++|++.+++.. .
T Consensus 189 h~~~ct~G~f~pdG-Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKV 267 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDG-KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKV 267 (399)
T ss_pred CCCCcccccccCCC-ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceE
Confidence 99999999999998 89999999999999999876530 0
Q ss_pred --------------------------------------------------ceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 362 --------------------------------------------------SVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 362 --------------------------------------------------~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
..++..-.|..+|+.+.|-+ . .+|++++
T Consensus 268 v~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t-~~l~t~c 345 (399)
T KOG0296|consen 268 VNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-T-DYLLTAC 345 (399)
T ss_pred EEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-c-chheeec
Confidence 00011113455566666655 2 5566666
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
.||.|++||.+++ ++++...||. .|.+++.+|+.. +++++++|+ .+||+..
T Consensus 346 ~~g~v~~wDaRtG-------------------------~l~~~y~GH~~~Il~f~ls~~~~-~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 346 ANGKVRQWDARTG-------------------------QLKFTYTGHQMGILDFALSPQKR-LVVTVSDDNTALVFEVP 398 (399)
T ss_pred cCceEEeeecccc-------------------------ceEEEEecCchheeEEEEcCCCc-EEEEecCCCeEEEEecC
Confidence 6666666666665 6777777776 799999999985 889999998 7888753
No 27
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.8e-30 Score=222.20 Aligned_cols=255 Identities=19% Similarity=0.285 Sum_probs=207.5
Q ss_pred EEEecCC-cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 163 LRKVAHQ-GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~-~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
.+.+.|. +.||++...|++ ..||+++. -.|++||+++. ...|+.+|.+|+..|.++.|
T Consensus 33 ~rTiqh~dsqVNrLeiTpdk-~~LAaa~~-qhvRlyD~~S~-------------------np~Pv~t~e~h~kNVtaVgF 91 (311)
T KOG0315|consen 33 SRTIQHPDSQVNRLEITPDK-KDLAAAGN-QHVRLYDLNSN-------------------NPNPVATFEGHTKNVTAVGF 91 (311)
T ss_pred EEEEecCccceeeEEEcCCc-chhhhccC-CeeEEEEccCC-------------------CCCceeEEeccCCceEEEEE
Confidence 4555665 789999999999 56666444 68999999983 34589999999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
..++. .++||+.||+++|||++.... .....|.++|+++..+|+.. .|++|..+|.|++||++.......-+.
T Consensus 92 ~~dgr-WMyTgseDgt~kIWdlR~~~~-----qR~~~~~spVn~vvlhpnQt-eLis~dqsg~irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 92 QCDGR-WMYTGSEDGTVKIWDLRSLSC-----QRNYQHNSPVNTVVLHPNQT-ELISGDQSGNIRVWDLGENSCTHELIP 164 (311)
T ss_pred eecCe-EEEecCCCceEEEEeccCccc-----chhccCCCCcceEEecCCcc-eEEeecCCCcEEEEEccCCccccccCC
Confidence 99998 999999999999999987433 34556789999999999988 899999999999999998742222234
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
.....|.++...|+| .+|+.+...|..++|++-+... .-.|+..|+.|.+.|..+.+||+. .+||++|.|.+++||
T Consensus 165 e~~~~i~sl~v~~dg-sml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iw 242 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDG-SMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIW 242 (311)
T ss_pred CCCcceeeEEEcCCC-cEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCC-cEEEeecCCceEEEE
Confidence 455789999999999 8999999999999999876432 234778899999999999999965 999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
+....-. .-+....|+..+.+++|+.++. .|++++.|+ .++|.+..-.
T Consensus 243 n~~~~~k-----------------------le~~l~gh~rWvWdc~FS~dg~-YlvTassd~~~rlW~~~~~k 291 (311)
T KOG0315|consen 243 NTDDFFK-----------------------LELVLTGHQRWVWDCAFSADGE-YLVTASSDHTARLWDLSAGK 291 (311)
T ss_pred ecCCcee-----------------------eEEEeecCCceEEeeeeccCcc-EEEecCCCCceeecccccCc
Confidence 9976510 1122223346799999999996 677777777 8999987764
No 28
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=242.17 Aligned_cols=249 Identities=22% Similarity=0.353 Sum_probs=219.5
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
++..+.+|+..|..|+|...| .++|+++.|=.+++||+.. ..+++..+.+|...|.++.
T Consensus 142 ~e~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~--------------------~~~c~ks~~gh~h~vS~V~ 200 (406)
T KOG0295|consen 142 LERSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDT--------------------FFRCIKSLIGHEHGVSSVF 200 (406)
T ss_pred hhhhhhccccceeEEEEecCc-cEEEecCCccchhheeHHH--------------------HHHHHHHhcCcccceeeEE
Confidence 345788999999999999999 8999999999999999988 3566777889999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|-|.+. +++|++.|.+|+.|++.++-. ...+.+|..-|.-++.+.+|. ++|+|+.|.+|++|-+.++. +...+
T Consensus 201 f~P~gd-~ilS~srD~tik~We~~tg~c----v~t~~~h~ewvr~v~v~~DGt-i~As~s~dqtl~vW~~~t~~-~k~~l 273 (406)
T KOG0295|consen 201 FLPLGD-HILSCSRDNTIKAWECDTGYC----VKTFPGHSEWVRMVRVNQDGT-IIASCSNDQTLRVWVVATKQ-CKAEL 273 (406)
T ss_pred EEecCC-eeeecccccceeEEeccccee----EEeccCchHhEEEEEecCCee-EEEecCCCceEEEEEeccch-hhhhh
Confidence 999997 999999999999999988654 367999999999999999998 99999999999999999875 67788
Q ss_pred ecCCCCEEEEEEcCCC--------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCE
Q 039302 321 KAHNADVNVISWNRLA--------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGST 386 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~--------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~ 386 (479)
..|..+|.+++|.|.. ..++++++.|++|++||+.++. ++.++.+|..+|..++|+| +|.+
T Consensus 274 R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~----cL~tL~ghdnwVr~~af~p-~Gky 348 (406)
T KOG0295|consen 274 REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM----CLFTLVGHDNWVRGVAFSP-GGKY 348 (406)
T ss_pred hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe----EEEEEecccceeeeeEEcC-CCeE
Confidence 9999999999997742 3699999999999999999998 8999999999999999999 5599
Q ss_pred EEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEE
Q 039302 387 LAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNIL 465 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw 465 (479)
|+++..|+++++||+++..+. ..+..|. --|+++.||.+.+ ++++|+-+. +++|
T Consensus 349 i~ScaDDktlrvwdl~~~~cm----------------------k~~~ah~--hfvt~lDfh~~~p-~VvTGsVdqt~Kvw 403 (406)
T KOG0295|consen 349 ILSCADDKTLRVWDLKNLQCM----------------------KTLEAHE--HFVTSLDFHKTAP-YVVTGSVDQTVKVW 403 (406)
T ss_pred EEEEecCCcEEEEEeccceee----------------------eccCCCc--ceeEEEecCCCCc-eEEeccccceeeee
Confidence 999999999999999998642 1222333 3599999999988 888999888 8888
Q ss_pred ee
Q 039302 466 MP 467 (479)
Q Consensus 466 ~~ 467 (479)
.-
T Consensus 404 Ec 405 (406)
T KOG0295|consen 404 EC 405 (406)
T ss_pred ec
Confidence 63
No 29
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=9.5e-31 Score=237.46 Aligned_cols=263 Identities=27% Similarity=0.420 Sum_probs=213.2
Q ss_pred eeEEEEecCCcceeEEEEecCC--CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQN--PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.......+|.++|..+.|.-.+ ...+++++.|.++++|.++...+. .+.+....||...|-
T Consensus 135 k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~-----------------~~~~~~~~GHk~~V~ 197 (423)
T KOG0313|consen 135 KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENK-----------------VKALKVCRGHKRSVD 197 (423)
T ss_pred ceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhh-----------------hhHHhHhccccccee
Confidence 3445788999999988887655 346899999999999999874332 233444559999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCC---------------------ccccCCCCcccCCCcEEEEEECCCCCcEE
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDA---------------------TWNVDPNPFIGHAASVEDLQWSPTESDVF 296 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~---------------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~l 296 (479)
+++..+++. ++++|+.|.+|.||+..+.. ....+...+.+|+.+|.++.|++.+ .+
T Consensus 198 sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~--v~ 274 (423)
T KOG0313|consen 198 SVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDAT--VI 274 (423)
T ss_pred EEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCC--ce
Confidence 999999998 99999999999999932210 0122334577999999999999833 79
Q ss_pred EEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 297 ASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 297 ~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
.++|.|.+|+.||+.+++ ....+. .+..+++++.+|.. .+||+|+.|..|++||.|++.. ..+..+|.+|++.|.+
T Consensus 275 yS~SwDHTIk~WDletg~-~~~~~~-~~ksl~~i~~~~~~-~Ll~~gssdr~irl~DPR~~~g-s~v~~s~~gH~nwVss 350 (423)
T KOG0313|consen 275 YSVSWDHTIKVWDLETGG-LKSTLT-TNKSLNCISYSPLS-KLLASGSSDRHIRLWDPRTGDG-SVVSQSLIGHKNWVSS 350 (423)
T ss_pred EeecccceEEEEEeeccc-ceeeee-cCcceeEeeccccc-ceeeecCCCCceeecCCCCCCC-ceeEEeeecchhhhhh
Confidence 999999999999999986 444444 45679999999988 9999999999999999999853 4466789999999999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s 456 (479)
+.|+|.+..+|++|+.|+++++||++.... .+.-.+.+...|.++.|+.. .+|+|
T Consensus 351 vkwsp~~~~~~~S~S~D~t~klWDvRS~k~-----------------------plydI~~h~DKvl~vdW~~~--~~IvS 405 (423)
T KOG0313|consen 351 VKWSPTNEFQLVSGSYDNTVKLWDVRSTKA-----------------------PLYDIAGHNDKVLSVDWNEG--GLIVS 405 (423)
T ss_pred eecCCCCceEEEEEecCCeEEEEEeccCCC-----------------------cceeeccCCceEEEEeccCC--ceEEe
Confidence 999999999999999999999999998742 23444444457999999875 47889
Q ss_pred EcCCC-ceEEeeeccC
Q 039302 457 TAADG-FNILMPSNIQ 471 (479)
Q Consensus 457 ~~~dg-i~iw~~~~~~ 471 (479)
||.|. |+|++..++.
T Consensus 406 GGaD~~l~i~~~~~~~ 421 (423)
T KOG0313|consen 406 GGADNKLRIFKGSPIT 421 (423)
T ss_pred ccCcceEEEecccccc
Confidence 98888 9999877653
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-31 Score=258.45 Aligned_cols=258 Identities=19% Similarity=0.262 Sum_probs=219.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
...+|+..|.++....+| .+|||||.|.+|++|.++.... ...++....+|...|.+++++.
T Consensus 360 ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~-----------------~~~~~a~~~gH~~svgava~~~ 421 (775)
T KOG0319|consen 360 IIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCS-----------------KSLCVAQANGHTNSVGAVAGSK 421 (775)
T ss_pred EEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcc-----------------hhhhhhhhcccccccceeeecc
Confidence 577999999999977677 7999999999999999954211 2345566789999999999998
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCcccc-----CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNV-----DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~-----~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
.+..+|+++|.|++|++|++........ .......|...|++++.+|+.+ +|||||.|++.+||++.... ...
T Consensus 422 ~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~-l~~ 499 (775)
T KOG0319|consen 422 LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR-LLG 499 (775)
T ss_pred cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCc-eEEecccccceeeecccCce-EEE
Confidence 8888999999999999999976322111 0112357999999999999999 99999999999999999664 778
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|...|.++.|+|.. .++||+|.|++|+||.+.++. ++.+|.+|...|..++|-.++ ..|++++.||.|++
T Consensus 500 vLsGH~RGvw~V~Fs~~d-q~laT~SgD~TvKIW~is~fS----ClkT~eGH~~aVlra~F~~~~-~qliS~~adGliKl 573 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKND-QLLATCSGDKTVKIWSISTFS----CLKTFEGHTSAVLRASFIRNG-KQLISAGADGLIKL 573 (775)
T ss_pred EeeCCccceEEEEecccc-ceeEeccCCceEEEEEeccce----eeeeecCccceeEeeeeeeCC-cEEEeccCCCcEEE
Confidence 899999999999999998 899999999999999999998 899999999999999999865 99999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccCC
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQS 472 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~~ 472 (479)
|++++..+. ..+-.|. ..|++++-+|... ++++++.|| |.+|+-.+.++
T Consensus 574 Wnikt~eC~----------------------~tlD~H~--DrvWaL~~~~~~~-~~~tgg~Dg~i~~wkD~Te~~ 623 (775)
T KOG0319|consen 574 WNIKTNECE----------------------MTLDAHN--DRVWALSVSPLLD-MFVTGGGDGRIIFWKDVTEEE 623 (775)
T ss_pred Eeccchhhh----------------------hhhhhcc--ceeEEEeecCccc-eeEecCCCeEEEEeecCcHHH
Confidence 999998653 2344443 6799999999986 888888888 88998655533
No 31
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=4.7e-31 Score=247.70 Aligned_cols=284 Identities=20% Similarity=0.292 Sum_probs=207.8
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
++++.+|+..|.++++.|.| -.|+|||.|.+|++||+......+.. .+.+.- .....|.++.|
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~G-aR~~sGs~Dy~v~~wDf~gMdas~~~--------------fr~l~P--~E~h~i~sl~y 222 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSG-ARFVSGSLDYTVKFWDFQGMDASMRS--------------FRQLQP--CETHQINSLQY 222 (641)
T ss_pred eEeccCCceEEEEeeecCCC-ceeeeccccceEEEEecccccccchh--------------hhccCc--ccccccceeee
Confidence 46788999999999999999 67889999999999999885443321 111111 22347899999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCC--------CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASD--------ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~--------~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
++.+. .|++.+....++|+|-... ...........||...++|.+|+|..+..|++|+.||++||||+...
T Consensus 223 s~Tg~-~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 223 SVTGD-QILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred cCCCC-eEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCc
Confidence 99998 8888777889999986432 22334445678999999999999999999999999999999999987
Q ss_pred CceeeEEe-----cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC--CeEEEEEeCCCCCE
Q 039302 314 KSALMSFK-----AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH--PVTSIEWSPHEGST 386 (479)
Q Consensus 314 ~~~~~~~~-----~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~--~I~~v~~sp~~~~~ 386 (479)
+..+..+. +..-.+++++|+|++ .+||+|+.||.|.+|+.++... ......-.+|.. .|+||.|++++ ++
T Consensus 302 k~q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ~W~~~~~~v-~p~~~vk~AH~~g~~Itsi~FS~dg-~~ 378 (641)
T KOG0772|consen 302 KSQLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQIWDKGSRTV-RPVMKVKDAHLPGQDITSISFSYDG-NY 378 (641)
T ss_pred hhheeEEeeccCCCcccCceeeecCCCc-chhhhcccCCceeeeecCCccc-ccceEeeeccCCCCceeEEEecccc-ch
Confidence 65444442 234578999999999 8899999999999999876553 223444567877 89999999955 99
Q ss_pred EEEEeCCCcEEEEECCCCCChHHHHH-----Hhhhccc----------ccCCC-CCCCCceEEeec-----------CCC
Q 039302 387 LAVSSADNQLTIWDLSLEKDEEEEAE-----FKAKTRE----------QVNAP-EDLPPQLLFIHQ-----------GQK 439 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~~~~~~~~-----~~~~~~~----------~~~~~-~~~p~~l~~~h~-----------g~~ 439 (479)
|++-|.|+++++|||+..+.+..... |...... ..... ...++.|.|... ...
T Consensus 379 LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a 458 (641)
T KOG0772|consen 379 LLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA 458 (641)
T ss_pred hhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc
Confidence 99999999999999998876533221 0000000 00001 112222332221 123
Q ss_pred CeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 440 DLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 440 ~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
.|..+.|||....+++++++++++||-
T Consensus 459 Svv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 459 SVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred eEEEEeecchhhheeeecCCCceEEEE
Confidence 588999999988889988888777763
No 32
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=2.6e-30 Score=228.04 Aligned_cols=241 Identities=23% Similarity=0.413 Sum_probs=204.8
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|.+.|..+.|++++ ..|++++.|.+|+.||+.+ ++.++.+++|..-|++++-+.
T Consensus 85 ~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~wD~~t---------------------G~~~rk~k~h~~~vNs~~p~r 142 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDG-SHILSCGTDKTVRGWDAET---------------------GKRIRKHKGHTSFVNSLDPSR 142 (338)
T ss_pred eeccccceeEeeeeccCC-CEEEEecCCceEEEEeccc---------------------ceeeehhccccceeeecCccc
Confidence 455999999999999999 6777889999999999998 788999999999999999666
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
-+.-++.||+.||+++|||+++.... + ....+..++++.|..++. .+.+|+-|+.|++||+|... ....+.+|
T Consensus 143 rg~~lv~SgsdD~t~kl~D~R~k~~~----~-t~~~kyqltAv~f~d~s~-qv~sggIdn~ikvWd~r~~d-~~~~lsGh 215 (338)
T KOG0265|consen 143 RGPQLVCSGSDDGTLKLWDIRKKEAI----K-TFENKYQLTAVGFKDTSD-QVISGGIDNDIKVWDLRKND-GLYTLSGH 215 (338)
T ss_pred cCCeEEEecCCCceEEEEeecccchh----h-ccccceeEEEEEeccccc-ceeeccccCceeeeccccCc-ceEEeecc
Confidence 66657889999999999999875442 2 223356799999998887 89999999999999999885 78889999
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC----CeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH----PVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~----~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
...|+.|+.+|.+ .++++-+.|.++++||+|-..+...++..|.+|.. ....++|+|++ ..+.+|+.|..+++|
T Consensus 216 ~DtIt~lsls~~g-s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvw 293 (338)
T KOG0265|consen 216 ADTITGLSLSRYG-SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVW 293 (338)
T ss_pred cCceeeEEeccCC-CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEe
Confidence 9999999999999 89999999999999999988776667888888643 34678999955 999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg 461 (479)
|.... .+++.-.||. .|+++.|||..+ +|.+++.|.
T Consensus 294 d~~~r-------------------------~~lyklpGh~gsvn~~~Fhp~e~-iils~~sdk 330 (338)
T KOG0265|consen 294 DTTSR-------------------------RILYKLPGHYGSVNEVDFHPTEP-IILSCSSDK 330 (338)
T ss_pred ecccc-------------------------cEEEEcCCcceeEEEeeecCCCc-EEEEeccCc
Confidence 99876 3445555555 699999999998 666676664
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.7e-31 Score=252.18 Aligned_cols=245 Identities=20% Similarity=0.346 Sum_probs=212.0
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
-.-+|.+.+|.+-. +.+++|++|..|+||++++ ...+..|..|.+-|.+++.+|..+
T Consensus 54 ~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfnynt---------------------~ekV~~FeAH~DyIR~iavHPt~P- 110 (794)
T KOG0276|consen 54 SEVPVRAAKFIARK-NWIVTGSDDMQIRVFNYNT---------------------GEKVKTFEAHSDYIRSIAVHPTLP- 110 (794)
T ss_pred cccchhhheeeecc-ceEEEecCCceEEEEeccc---------------------ceeeEEeeccccceeeeeecCCCC-
Confidence 34678888888876 7889999999999999998 778899999999999999999999
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+++|++.|-.|++||-... |.. .+.|.||+..|.+++|+|.+++.||+||.|++|++|.+.+.. +..++.+|...|
T Consensus 111 ~vLtsSDDm~iKlW~we~~--wa~-~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~-~nfTl~gHekGV 186 (794)
T KOG0276|consen 111 YVLTSSDDMTIKLWDWENE--WAC-EQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH-PNFTLEGHEKGV 186 (794)
T ss_pred eEEecCCccEEEEeeccCc--eee-eeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC-CceeeeccccCc
Confidence 9999999999999998653 332 477999999999999999999999999999999999999875 888999999999
Q ss_pred EEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCC
Q 039302 328 NVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKD 406 (479)
Q Consensus 328 ~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~ 406 (479)
||+++-+.+ ..+|++|++|.+|+|||..+.. ++.++.+|...|..+.|+|.- .+|+|||+||+|+||+-.+-+.
T Consensus 187 N~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~----CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 187 NCVDYYTGGDKPYLISGADDLTIKVWDYQTKS----CVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKL 261 (794)
T ss_pred ceEEeccCCCcceEEecCCCceEEEeecchHH----HHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCcceeh
Confidence 999998755 4699999999999999999988 899999999999999999965 8999999999999999887653
Q ss_pred hHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 407 EEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
+. .+. -|-..|++++-++... .++.|.+.|+.+.++..
T Consensus 262 E~---------------------tLn---~gleRvW~I~~~k~~~-~i~vG~Deg~i~v~lgr 299 (794)
T KOG0276|consen 262 EK---------------------TLN---YGLERVWCIAAHKGDG-KIAVGFDEGSVTVKLGR 299 (794)
T ss_pred hh---------------------hhh---cCCceEEEEeecCCCC-eEEEeccCCcEEEEccC
Confidence 21 111 2235788998888764 67778888776666643
No 34
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.2e-30 Score=251.15 Aligned_cols=267 Identities=19% Similarity=0.311 Sum_probs=207.6
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
..+..+|...+++++++|+| .++|||++||.|+|||... +-++.+|..|+..|+++.|
T Consensus 343 VlKQQgH~~~i~~l~YSpDg-q~iaTG~eDgKVKvWn~~S---------------------gfC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 343 VLKQQGHSDRITSLAYSPDG-QLIATGAEDGKVKVWNTQS---------------------GFCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred eeeccccccceeeEEECCCC-cEEEeccCCCcEEEEeccC---------------------ceEEEEeccCCCceEEEEE
Confidence 35778999999999999999 8999999999999999987 7899999999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCC-cEEEEEcCCCCceeeE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDG-NIAIWDTRVGKSALMS 319 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg-~I~iwD~~~~~~~~~~ 319 (479)
+..+. .+++.+.||+|+.||+....... +|.. ..-...|++..|.|. ++++|+.|. .|.+|++.+++ .+-.
T Consensus 401 ~~~g~-~llssSLDGtVRAwDlkRYrNfR----Tft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGq-llDi 473 (893)
T KOG0291|consen 401 TARGN-VLLSSSLDGTVRAWDLKRYRNFR----TFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQ-LLDI 473 (893)
T ss_pred EecCC-EEEEeecCCeEEeeeecccceee----eecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCe-eeeh
Confidence 99998 99999999999999998765533 2322 233567899999998 788887775 59999999996 7778
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
+.+|.++|.+++|+|.+ ..|++||.|.+|++||+-.... .+.++. +...++.++|+|++ ..||++..||.|.+|
T Consensus 474 LsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~---~vEtl~-i~sdvl~vsfrPdG-~elaVaTldgqItf~ 547 (893)
T KOG0291|consen 474 LSGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSG---TVETLE-IRSDVLAVSFRPDG-KELAVATLDGQITFF 547 (893)
T ss_pred hcCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCc---eeeeEe-eccceeEEEEcCCC-CeEEEEEecceEEEE
Confidence 89999999999999999 8999999999999999976653 455555 57789999999965 999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCC-ceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPP-QLLFIHQG-QKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
|............ . .......... .....+.. .+..+.++++++|..+|+.|-...|+||+..+
T Consensus 548 d~~~~~q~~~Idg-----r-kD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~ 613 (893)
T KOG0291|consen 548 DIKEAVQVGSIDG-----R-KDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE 613 (893)
T ss_pred Ehhhceeeccccc-----h-hhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence 9987642210000 0 0000000000 11111221 13699999999997444444444499998754
No 35
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=2.3e-31 Score=254.86 Aligned_cols=249 Identities=20% Similarity=0.289 Sum_probs=221.5
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
+..|...|-+|.++|..|-+|++ -.+|.|.||+.++ ...+..|.-...+|.+..|-+.
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~-LynG~V~IWnyet---------------------qtmVksfeV~~~PvRa~kfiaR 66 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAA-LYNGDVQIWNYET---------------------QTMVKSFEVSEVPVRAAKFIAR 66 (794)
T ss_pred hhccCCceeeeecCCCCceEEEe-eecCeeEEEeccc---------------------ceeeeeeeecccchhhheeeec
Confidence 44589999999999999766655 8899999999998 5667778777789999999998
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
.+ .+++|+.|..|+||+.++..+ ...|.+|...|++|+.+|+.+ +++++|+|-+|++||-...-.+.+++.+|.
T Consensus 67 kn-Wiv~GsDD~~IrVfnynt~ek----V~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 67 KN-WIVTGSDDMQIRVFNYNTGEK----VKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred cc-eEEEecCCceEEEEeccccee----eEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence 87 999999999999999998766 366999999999999999999 999999999999999998877889999999
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC-CCEEEEEeCCCcEEEEECCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-GSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-~~~las~s~Dg~I~iwdl~~ 403 (479)
..|.+++|+|...+.+|+++-|++|+||.+.+.. +..++.+|...|++|.+-+-+ ..+|+||+.|.+|+|||..+
T Consensus 141 HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~----~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQt 216 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH----PNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQT 216 (794)
T ss_pred eEEEEEEecCCCccceeeeeccccEEEEEcCCCC----CceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecch
Confidence 9999999999999999999999999999999888 899999999999999998732 35999999999999999998
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..+. +.+..|. ..|+.+.|||.-| +++||++|| ++||+....
T Consensus 217 k~CV----------------------~TLeGHt--~Nvs~v~fhp~lp-iiisgsEDGTvriWhs~Ty 259 (794)
T KOG0276|consen 217 KSCV----------------------QTLEGHT--NNVSFVFFHPELP-IIISGSEDGTVRIWNSKTY 259 (794)
T ss_pred HHHH----------------------HHhhccc--ccceEEEecCCCc-EEEEecCCccEEEecCcce
Confidence 7653 3455554 4699999999998 999999999 999987554
No 36
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=238.35 Aligned_cols=311 Identities=18% Similarity=0.232 Sum_probs=242.6
Q ss_pred hhHHHhhhcccccCceeeEEEeeCCCCC-CcccCCceE-EEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCC
Q 039302 58 PTAYNSLHAFHIGWPCLSFDILRDTLGL-VRNEFPYTA-YFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDE 135 (479)
Q Consensus 58 ~~~Y~~~~~~~~~wP~ls~~~~~d~~~~-~~~~~~~~~-~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~ 135 (479)
-++|....+....-||-+.+++.++..+ .-..|.++. ||+. .+++....||++...
T Consensus 199 vsll~Dh~c~~~qip~qt~qil~~htdEVWfl~FS~nGkyLAs-----aSkD~Taiiw~v~~d----------------- 256 (519)
T KOG0293|consen 199 VSLLSDHFCGRLQIPSQTWQILQDHTDEVWFLQFSHNGKYLAS-----ASKDSTAIIWIVVYD----------------- 256 (519)
T ss_pred hhhhhhcccCcccCCchhhhhHhhCCCcEEEEEEcCCCeeEee-----ccCCceEEEEEEecC-----------------
Confidence 3678888889999999999999997643 234454443 4443 357788999999420
Q ss_pred CCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCC
Q 039302 136 DADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGH 215 (479)
Q Consensus 136 ~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~ 215 (479)
..-.+..++.+|..+|.-+.|+|+. +++++|+.+..+.+||+.+
T Consensus 257 ---------------------~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~~~lwDv~t-------------- 300 (519)
T KOG0293|consen 257 ---------------------VHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEVLSLWDVDT-------------- 300 (519)
T ss_pred ---------------------cceeeeeeeecccCceEEEEECCCC-CeEEecCchHheeeccCCc--------------
Confidence 1345667899999999999999999 5666678888899999988
Q ss_pred CCCccccCCCcEEec-CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCC
Q 039302 216 GAPQVLNQSPLVKFG-GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTES 293 (479)
Q Consensus 216 ~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~ 293 (479)
+.....+. +|...+.+++|.|++. .+++|+.|++|..||+..... ....+- ...|.+++.+++|+
T Consensus 301 -------gd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~-----~~W~gvr~~~v~dlait~Dgk 367 (519)
T KOG0293|consen 301 -------GDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNIL-----GNWEGVRDPKVHDLAITYDGK 367 (519)
T ss_pred -------chhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchh-----hcccccccceeEEEEEcCCCc
Confidence 34433332 3456899999999998 999999999999999965322 222222 25699999999999
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP 373 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~ 373 (479)
.+++.+.|..|++++..+.. ... +..-..+|++++.+.++ .++++.-.+..|++||+.... .+..+.||+..
T Consensus 368 -~vl~v~~d~~i~l~~~e~~~-dr~-lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~e~~----lv~kY~Ghkq~ 439 (519)
T KOG0293|consen 368 -YVLLVTVDKKIRLYNREARV-DRG-LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLEENK----LVRKYFGHKQG 439 (519)
T ss_pred -EEEEEecccceeeechhhhh-hhc-cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecchhh----HHHHhhccccc
Confidence 67777789999999988753 222 33345689999999999 888888999999999999665 78889998765
Q ss_pred --eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCC
Q 039302 374 --VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQV 450 (479)
Q Consensus 374 --I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~ 450 (479)
|..-+|--.+..++|+||+|+.|+||+..+++ ++..-.||. .|++|+|+|..
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-------------------------ll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGK-------------------------LLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCc-------------------------eeEeecCCcceeeEEecCCCC
Confidence 44445665555899999999999999998883 455555665 69999999999
Q ss_pred CcEEEEEcCCC-ceEEeeeccCC
Q 039302 451 PGMIVSTAADG-FNILMPSNIQS 472 (479)
Q Consensus 451 ~~ll~s~~~dg-i~iw~~~~~~~ 472 (479)
|.++||+++|| |+||.+....+
T Consensus 495 p~m~ASasDDgtIRIWg~~~~~r 517 (519)
T KOG0293|consen 495 PEMFASASDDGTIRIWGPSDNNR 517 (519)
T ss_pred HHHhhccCCCCeEEEecCCcccc
Confidence 99999999999 99999876533
No 37
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=5.8e-29 Score=234.65 Aligned_cols=244 Identities=27% Similarity=0.449 Sum_probs=202.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.....|...+..+.|+|++ .++++++.+|.|++|++.. .+.+..+..|...+.++.|+
T Consensus 45 ~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~~~---------------------~~~~~~~~~~~~~i~~~~~~ 102 (289)
T cd00200 45 RTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDLET---------------------GECVRTLTGHTSYVSSVAFS 102 (289)
T ss_pred EEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEcCc---------------------ccceEEEeccCCcEEEEEEc
Confidence 4567889999999999998 6888889999999999987 45667788898899999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+++. ++++++.+|.|++|++.+.... ..+..|...|.+++|+|++. ++++++.+|.|++||++..+ .+..+..
T Consensus 103 ~~~~-~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i~i~d~~~~~-~~~~~~~ 175 (289)
T cd00200 103 PDGR-ILSSSSRDKTIKVWDVETGKCL----TTLRGHTDWVNSVAFSPDGT-FVASSSQDGTIKLWDLRTGK-CVATLTG 175 (289)
T ss_pred CCCC-EEEEecCCCeEEEEECCCcEEE----EEeccCCCcEEEEEEcCcCC-EEEEEcCCCcEEEEEccccc-cceeEec
Confidence 9976 8888888999999999854432 33557888999999999976 78888789999999999775 6677788
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...+.+++|+|++ ..|++++.+|.|++||++... .+..+..|..+|.++.|+|+ +.++++++.|+.|++|++.
T Consensus 176 ~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~i~~~~ 249 (289)
T cd00200 176 HTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK----CLGTLRGHENGVNSVAFSPD-GYLLASGSEDGTIRVWDLR 249 (289)
T ss_pred CccccceEEECCCc-CEEEEecCCCcEEEEECCCCc----eecchhhcCCceEEEEEcCC-CcEEEEEcCCCcEEEEEcC
Confidence 88899999999998 788888889999999999876 67888789999999999996 5888888889999999998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
..... ..+..| ...|.+++|+|++. ++++++.++ +++|+
T Consensus 250 ~~~~~----------------------~~~~~~--~~~i~~~~~~~~~~-~l~~~~~d~~i~iw~ 289 (289)
T cd00200 250 TGECV----------------------QTLSGH--TNSVTSLAWSPDGK-RLASGSADGTIRIWD 289 (289)
T ss_pred CceeE----------------------EEcccc--CCcEEEEEECCCCC-EEEEecCCCeEEecC
Confidence 65310 112222 24799999999975 677777777 88885
No 38
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.1e-30 Score=225.37 Aligned_cols=246 Identities=19% Similarity=0.365 Sum_probs=203.4
Q ss_pred eEEEEecCCCcEEEEEe-------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 173 NRIRAMSQNPHICASWA-------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s-------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+++|+|--++.||.+. ..|++.|-++.... .......+ .-.+.++.++|++..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~------------------gi~e~~s~-d~~D~LfdV~Wse~~ 72 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPK------------------GIQECQSY-DTEDGLFDVAWSENH 72 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCC------------------CeEEEEee-ecccceeEeeecCCC
Confidence 57889996544444432 36889999986410 11222233 235689999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.+.+++++.||+++|||+..... ++..++.|...|.++.|++..+..|+++|-|++|++|+...++ .+.++.+|..
T Consensus 73 e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~-Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 73 ENQVIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN-SVQTFNGHNS 148 (311)
T ss_pred cceEEEEecCceEEEeccCCCCc---chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc-ceEeecCCcc
Confidence 98999999999999999654333 3477899999999999999988899999999999999998875 7889999999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.|....|+|..++++++++.||++++||+|.... ...+..|...|.++.|+..+.++|+||+.|+.|++||++..+
T Consensus 149 ~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk----~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r 224 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK----FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR 224 (311)
T ss_pred EEEEEecCCCCCCeEEEccCCceEEEEEecCCCc----eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc
Confidence 9999999999999999999999999999998763 444999999999999999899999999999999999999884
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.| ++.-.||. .|+.++|+|....+|+|++.|- ++||++..
T Consensus 225 ---------------------~p---l~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~ 266 (311)
T KOG0277|consen 225 ---------------------TP---LFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPER 266 (311)
T ss_pred ---------------------cc---ceeecCCceEEEEEecCcchhhHhhhccccceEEeccccc
Confidence 22 33334444 7999999999989999999998 89998853
No 39
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.2e-30 Score=222.63 Aligned_cols=247 Identities=20% Similarity=0.299 Sum_probs=209.3
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+..|+++|+.++|+-+| ++++|++.|.+|++|+.-. +..+.++.+|..+|..++.+
T Consensus 11 ~~l~~~qgaV~avryN~dG-nY~ltcGsdrtvrLWNp~r---------------------g~liktYsghG~EVlD~~~s 68 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRYNVDG-NYCLTCGSDRTVRLWNPLR---------------------GALIKTYSGHGHEVLDAALS 68 (307)
T ss_pred eeecccccceEEEEEccCC-CEEEEcCCCceEEeecccc---------------------cceeeeecCCCceeeecccc
Confidence 3567899999999999999 7888999999999999887 78999999999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-ceeeEEe
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK-SALMSFK 321 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~-~~~~~~~ 321 (479)
.++. .|++|+.|..|.+||+++++. .+.+.+|.+.|+.++|+.... ++++|+.|.++++||.|+.. .|++.+.
T Consensus 69 ~Dns-kf~s~GgDk~v~vwDV~TGkv----~Rr~rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 69 SDNS-KFASCGGDKAVQVWDVNTGKV----DRRFRGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQILD 142 (307)
T ss_pred cccc-ccccCCCCceEEEEEcccCee----eeecccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccchhh
Confidence 9997 999999999999999999766 467999999999999998877 99999999999999999874 3778887
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.....|.+|..+. ..|++|+.||+++.||+|.+. ..... -..||++++|++++ +..++++.|++|++.|-
T Consensus 143 ea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~----l~sDy--~g~pit~vs~s~d~-nc~La~~l~stlrLlDk 212 (307)
T KOG0316|consen 143 EAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGT----LSSDY--FGHPITSVSFSKDG-NCSLASSLDSTLRLLDK 212 (307)
T ss_pred hhcCceeEEEecc---cEEEeeccCCcEEEEEeecce----eehhh--cCCcceeEEecCCC-CEEEEeeccceeeeccc
Confidence 7788899999885 789999999999999999987 33333 45699999999955 89999999999999998
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.+++-- +....|....-=.+++++... ..++++++|| +.+|++-+-
T Consensus 213 ~tGklL----------------------~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 213 ETGKLL----------------------KSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred chhHHH----------------------HHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccc
Confidence 887421 122334332334566677665 4899999999 999998653
No 40
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=4.2e-29 Score=269.52 Aligned_cols=260 Identities=20% Similarity=0.287 Sum_probs=199.6
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+...|.++.|++....+||+++.||+|+|||+.. .+.+..+.+|...|++++|+|...
T Consensus 530 ~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~---------------------~~~~~~~~~H~~~V~~l~~~p~~~ 588 (793)
T PLN00181 530 ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVAR---------------------SQLVTEMKEHEKRVWSIDYSSADP 588 (793)
T ss_pred cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCC---------------------CeEEEEecCCCCCEEEEEEcCCCC
Confidence 45678999999987668899999999999999986 566778899999999999997443
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
.+|++|+.||.|++||+.++... ..+.. ...|.++.|++....+|++|+.||.|++||++..+.++..+.+|...
T Consensus 589 ~~L~Sgs~Dg~v~iWd~~~~~~~----~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~ 663 (793)
T PLN00181 589 TLLASGSDDGSVKLWSINQGVSI----GTIKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT 663 (793)
T ss_pred CEEEEEcCCCEEEEEECCCCcEE----EEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC
Confidence 49999999999999999875432 22333 36799999966544499999999999999999876566778899999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|.++.|. ++ .+|++++.|++|+|||++.... ...++..+.+|...++++.|+|++ .+|++|+.|+.|++|+....
T Consensus 664 V~~v~f~-~~-~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 664 VSYVRFV-DS-STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-GYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEEEEEe-CC-CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-CEEEEEeCCCEEEEEECCCC
Confidence 9999997 44 6899999999999999986421 123788999999999999999965 89999999999999998654
Q ss_pred CChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 405 KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
..... + ........+ . +..+.+...|.+++|+|++. +|++++.+| |+||++
T Consensus 741 ~~~~s---~------~~~~~~~~~-~-~~~~~~~~~V~~v~ws~~~~-~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 741 MPVLS---Y------KFKTIDPVS-G-LEVDDASQFISSVCWRGQSS-TLVAANSTGNIKILEM 792 (793)
T ss_pred CceEE---E------ecccCCccc-c-cccCCCCcEEEEEEEcCCCC-eEEEecCCCcEEEEec
Confidence 21000 0 000000000 0 11122224699999999996 566666666 999986
No 41
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=2.6e-30 Score=232.77 Aligned_cols=279 Identities=19% Similarity=0.375 Sum_probs=232.3
Q ss_pred CceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCc
Q 039302 91 PYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQG 170 (479)
Q Consensus 91 ~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~ 170 (479)
|.+.+|+.| +.+..|.||++. ..++...+.+|..
T Consensus 161 P~n~wf~tg-----s~DrtikIwDla-----------------------------------------tg~LkltltGhi~ 194 (460)
T KOG0285|consen 161 PGNEWFATG-----SADRTIKIWDLA-----------------------------------------TGQLKLTLTGHIE 194 (460)
T ss_pred CCceeEEec-----CCCceeEEEEcc-----------------------------------------cCeEEEeecchhh
Confidence 556778876 478899999883 4567789999999
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.|..+++++-.+ ++.+++.|+.|+.||+.. .+.+..+.||-..|+||+.+|.-. .|+
T Consensus 195 ~vr~vavS~rHp-YlFs~gedk~VKCwDLe~---------------------nkvIR~YhGHlS~V~~L~lhPTld-vl~ 251 (460)
T KOG0285|consen 195 TVRGVAVSKRHP-YLFSAGEDKQVKCWDLEY---------------------NKVIRHYHGHLSGVYCLDLHPTLD-VLV 251 (460)
T ss_pred eeeeeeecccCc-eEEEecCCCeeEEEechh---------------------hhhHHHhccccceeEEEeccccce-eEE
Confidence 999999999885 566889999999999997 678889999999999999999988 999
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
+|+.|.+++|||+++... ...+.||..+|.++.+.|.++ .+++||.|++|++||++.++ .+..+..|...|.++
T Consensus 252 t~grDst~RvWDiRtr~~----V~~l~GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agk-t~~tlt~hkksvral 325 (460)
T KOG0285|consen 252 TGGRDSTIRVWDIRTRAS----VHVLSGHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGK-TMITLTHHKKSVRAL 325 (460)
T ss_pred ecCCcceEEEeeecccce----EEEecCCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCc-eeEeeecccceeeEE
Confidence 999999999999998654 356889999999999999998 89999999999999999997 677889999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
+.+|.. +.||+++.| .|+-|++..+. .+..+.+|+.-|++++.+.+ .++++|+..|.+.+||.+.+......
T Consensus 326 ~lhP~e-~~fASas~d-nik~w~~p~g~----f~~nlsgh~~iintl~~nsD--~v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 326 CLHPKE-NLFASASPD-NIKQWKLPEGE----FLQNLSGHNAIINTLSVNSD--GVLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred ecCCch-hhhhccCCc-cceeccCCccc----hhhccccccceeeeeeeccC--ceEEEcCCceEEEEEecCcCcccccc
Confidence 999998 899999887 58999999887 67779999999999999873 69999999999999999987532111
Q ss_pred HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 411 AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+. ...|-.+ .....|.+.+|...+. -|+++..|. |++|+-..
T Consensus 398 ~t-------------~vqpGSl---~sEagI~as~fDktg~-rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 398 QT-------------IVQPGSL---ESEAGIFASCFDKTGS-RLITGEADKTIKMYKEDE 440 (460)
T ss_pred cc-------------cccCCcc---ccccceeEEeecccCc-eEEeccCCcceEEEeccc
Confidence 00 0111111 1224699999999986 455555554 99997543
No 42
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.4e-29 Score=242.94 Aligned_cols=247 Identities=19% Similarity=0.321 Sum_probs=207.6
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|++.+|++.. ++||+|=..|...+|.+.. ...++.+.-...+|..++|+..|. .
T Consensus 265 ~~kvtaa~fH~~t-~~lvvgFssG~f~LyelP~---------------------f~lih~LSis~~~I~t~~~N~tGD-W 321 (893)
T KOG0291|consen 265 SSKVTAAAFHKGT-NLLVVGFSSGEFGLYELPD---------------------FNLIHSLSISDQKILTVSFNSTGD-W 321 (893)
T ss_pred ccceeeeeccCCc-eEEEEEecCCeeEEEecCC---------------------ceEEEEeecccceeeEEEecccCC-E
Confidence 3789999999966 8999999999999999987 677788877778999999999998 8
Q ss_pred EEEEeCC-CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 249 LVSGDCN-SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 249 l~sg~~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
||.|+.. |.+.||+.....- ....++|...+++++++|+|. ++|+|+.||.|+|||.+++- |..++..|++.|
T Consensus 322 iA~g~~klgQLlVweWqsEsY----VlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~V 395 (893)
T KOG0291|consen 322 IAFGCSKLGQLLVWEWQSESY----VLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGF-CFVTFTEHTSGV 395 (893)
T ss_pred EEEcCCccceEEEEEeeccce----eeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCce-EEEEeccCCCce
Confidence 8887754 7999999976432 245779999999999999999 99999999999999999985 899999999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC----------------------------------------CCceEEEe
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKG----------------------------------------GDSVVAHF 367 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~----------------------------------------~~~~~~~~ 367 (479)
+.++|+..+ +.+++.+-||+|+.||+..... .++.+-.+
T Consensus 396 t~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiL 474 (893)
T KOG0291|consen 396 TAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDIL 474 (893)
T ss_pred EEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehh
Confidence 999999999 9999999999999999864432 02345556
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe
Q 039302 368 EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH 447 (479)
Q Consensus 368 ~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~ 447 (479)
.+|.+||.+++|+|.+ ..|+++|.|.+|++||+-..... .+.+. + ...+..++|+
T Consensus 475 sGHEgPVs~l~f~~~~-~~LaS~SWDkTVRiW~if~s~~~---------------------vEtl~-i--~sdvl~vsfr 529 (893)
T KOG0291|consen 475 SGHEGPVSGLSFSPDG-SLLASGSWDKTVRIWDIFSSSGT---------------------VETLE-I--RSDVLAVSFR 529 (893)
T ss_pred cCCCCcceeeEEcccc-CeEEeccccceEEEEEeeccCce---------------------eeeEe-e--ccceeEEEEc
Confidence 7999999999999965 89999999999999999655211 11121 2 2479999999
Q ss_pred CCCCcEEEEEcCCCceEEeeecc
Q 039302 448 TQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 448 p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
|+|..+.+++-++.|.+|++...
T Consensus 530 PdG~elaVaTldgqItf~d~~~~ 552 (893)
T KOG0291|consen 530 PDGKELAVATLDGQITFFDIKEA 552 (893)
T ss_pred CCCCeEEEEEecceEEEEEhhhc
Confidence 99987777777767999998765
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.2e-29 Score=255.58 Aligned_cols=248 Identities=24% Similarity=0.370 Sum_probs=207.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|...|++++|+|++ .++++++.|++|+|||+.. ....+.++.+|...|++++|+|
T Consensus 198 ~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~--------------------~~~~~~~l~gH~~~v~~~~f~p 256 (456)
T KOG0266|consen 198 ELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKD--------------------DGRNLKTLKGHSTYVTSVAFSP 256 (456)
T ss_pred cccccccceeeeEECCCC-cEEEEecCCceEEEeeccC--------------------CCeEEEEecCCCCceEEEEecC
Confidence 347999999999999999 6999999999999999954 3678899999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEec
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFKA 322 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~~ 322 (479)
.+. ++++|+.|++|+|||++++.. ...+.+|...|++++|++++. +|++++.|+.|+|||+.++.. ++..+..
T Consensus 257 ~g~-~i~Sgs~D~tvriWd~~~~~~----~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~ 330 (456)
T KOG0266|consen 257 DGN-LLVSGSDDGTVRIWDVRTGEC----VRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLKLLSG 330 (456)
T ss_pred CCC-EEEEecCCCcEEEEeccCCeE----EEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeeecccC
Confidence 995 999999999999999988544 366899999999999999999 999999999999999999863 2445555
Q ss_pred CCC--CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe---EEEEEeCCCCCEEEEEeCCCcEE
Q 039302 323 HNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV---TSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 323 h~~--~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I---~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+.. .+++++|+|++ .+|++++.|+.+++||++... .+..+.+|...+ .+...++ ++.++++|+.|+.|.
T Consensus 331 ~~~~~~~~~~~fsp~~-~~ll~~~~d~~~~~w~l~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~i~sg~~d~~v~ 404 (456)
T KOG0266|consen 331 AENSAPVTSVQFSPNG-KYLLSASLDRTLKLWDLRSGK----SVGTYTGHSNLVRCIFSPTLST-GGKLIYSGSEDGSVY 404 (456)
T ss_pred CCCCCceeEEEECCCC-cEEEEecCCCeEEEEEccCCc----ceeeecccCCcceeEecccccC-CCCeEEEEeCCceEE
Confidence 554 49999999999 999999999999999999988 788888888754 3334455 559999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc--CCC-ceEEeee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA--ADG-FNILMPS 468 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~--~dg-i~iw~~~ 468 (479)
+|++...... +.+..|. ...|..+.|||... ++++.+ .|+ +++|+..
T Consensus 405 ~~~~~s~~~~----------------------~~l~~h~-~~~~~~~~~~~~~~-~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 405 VWDSSSGGIL----------------------QRLEGHS-KAAVSDLSSHPTEN-LIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEeCCccchh----------------------hhhcCCC-CCceeccccCCCcC-eeeecCcCCCceEEEecCC
Confidence 9999975321 3344443 35799999999985 777777 454 8888753
No 44
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.5e-29 Score=253.24 Aligned_cols=260 Identities=23% Similarity=0.355 Sum_probs=209.8
Q ss_pred CceeEEEEecC-CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 158 TPILQLRKVAH-QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H-~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
.+.+...+..| ...|.++.|+++| ..+++++.++.+++|+..... ...+..+.+|...|
T Consensus 147 ~~~~~~~~~~~~~~sv~~~~fs~~g-~~l~~~~~~~~i~~~~~~~~~-------------------~~~~~~l~~h~~~v 206 (456)
T KOG0266|consen 147 VFSLEQTLAGHECPSVTCVDFSPDG-RALAAASSDGLIRIWKLEGIK-------------------SNLLRELSGHTRGV 206 (456)
T ss_pred cceeeeeecccccCceEEEEEcCCC-CeEEEccCCCcEEEeeccccc-------------------chhhccccccccce
Confidence 33443344444 7899999999999 568899999999999995510 02556668999999
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
++++|+|++. ++++|+.|++|+|||+...... .+.+.+|...|++++|+|.+. ++++|+.|++|+|||++++. +
T Consensus 207 ~~~~fs~d~~-~l~s~s~D~tiriwd~~~~~~~---~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~-~ 280 (456)
T KOG0266|consen 207 SDVAFSPDGS-YLLSGSDDKTLRIWDLKDDGRN---LKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGE-C 280 (456)
T ss_pred eeeEECCCCc-EEEEecCCceEEEeeccCCCeE---EEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCe-E
Confidence 9999999998 9999999999999999443232 356889999999999999995 99999999999999999975 8
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC--eEEEEEeCCCCCEEEEEeCCC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP--VTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~--I~~v~~sp~~~~~las~s~Dg 394 (479)
+..+.+|...|++++|++++ .+|++++.|+.|+|||+.++... ++..+..+..+ +++++|+|++ .+|++++.|+
T Consensus 281 ~~~l~~hs~~is~~~f~~d~-~~l~s~s~d~~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~~fsp~~-~~ll~~~~d~ 356 (456)
T KOG0266|consen 281 VRKLKGHSDGISGLAFSPDG-NLLVSASYDGTIRVWDLETGSKL--CLKLLSGAENSAPVTSVQFSPNG-KYLLSASLDR 356 (456)
T ss_pred EEeeeccCCceEEEEECCCC-CEEEEcCCCccEEEEECCCCcee--eeecccCCCCCCceeEEEECCCC-cEEEEecCCC
Confidence 89999999999999999999 89999999999999999998731 24566665555 9999999965 9999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.+++||++..... .....|... ..+.+...++.+. ++++++.|+ |.+|++.+.
T Consensus 357 ~~~~w~l~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~-~i~sg~~d~~v~~~~~~s~ 411 (456)
T KOG0266|consen 357 TLKLWDLRSGKSV----------------------GTYTGHSNLVRCIFSPTLSTGGK-LIYSGSEDGSVYVWDSSSG 411 (456)
T ss_pred eEEEEEccCCcce----------------------eeecccCCcceeEecccccCCCC-eEEEEeCCceEEEEeCCcc
Confidence 9999999987532 223333322 1344445566665 788888888 999998864
No 45
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.4e-30 Score=220.43 Aligned_cols=261 Identities=20% Similarity=0.324 Sum_probs=207.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
....|...|..+...-.| ..||||+.|++|+||.+.... ..+++.++.||.++|+.++|..
T Consensus 6 idt~H~D~IHda~lDyyg-krlATcsSD~tVkIf~v~~n~------------------~s~ll~~L~Gh~GPVwqv~wah 66 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYG-KRLATCSSDGTVKIFEVRNNG------------------QSKLLAELTGHSGPVWKVAWAH 66 (299)
T ss_pred hhhhhhhhhhHhhhhhhc-ceeeeecCCccEEEEEEcCCC------------------CceeeeEecCCCCCeeEEeecc
Confidence 345788888887777777 789999999999999998731 1367889999999999999986
Q ss_pred --CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCC-c-eee
Q 039302 244 --VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGK-S-ALM 318 (479)
Q Consensus 244 --~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~-~-~~~ 318 (479)
.|. +||+++.||.|.||.-..+ .|.. ...+..|.++|++++|-|.+- .+|++++.||.|.|.+.+... . ...
T Consensus 67 Pk~G~-iLAScsYDgkVIiWke~~g-~w~k-~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~k 143 (299)
T KOG1332|consen 67 PKFGT-ILASCSYDGKVIIWKEENG-RWTK-AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSK 143 (299)
T ss_pred cccCc-EeeEeecCceEEEEecCCC-chhh-hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchh
Confidence 555 9999999999999998665 5442 355778999999999999763 368889999999999998762 1 233
Q ss_pred EEecCCCCEEEEEEcCCC-------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC--
Q 039302 319 SFKAHNADVNVISWNRLA-------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-- 383 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~-------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-- 383 (479)
...+|.-.|++++|.|.. ...|++|+.|..|+||+..+.. ...-.+|.+|++.|+.++|.|.-
T Consensus 144 i~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~--w~~e~~l~~H~dwVRDVAwaP~~gl 221 (299)
T KOG1332|consen 144 IVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS--WKLERTLEGHKDWVRDVAWAPSVGL 221 (299)
T ss_pred hhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--hhhhhhhhhcchhhhhhhhccccCC
Confidence 458899999999999862 1469999999999999998864 33455699999999999999964
Q ss_pred -CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCc
Q 039302 384 -GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGF 462 (479)
Q Consensus 384 -~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi 462 (479)
...||++|.||+|.||-.+.+..+ . +....+.....+..+.|++.+..|.++++++.|
T Consensus 222 ~~s~iAS~SqDg~viIwt~~~e~e~-------------------w--k~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv 280 (299)
T KOG1332|consen 222 PKSTIASCSQDGTVIIWTKDEEYEP-------------------W--KKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV 280 (299)
T ss_pred CceeeEEecCCCcEEEEEecCccCc-------------------c--cccccccCCcceEEEEEeccccEEEEecCCcEE
Confidence 258999999999999998844221 1 112223333579999999999866677777779
Q ss_pred eEEeeec
Q 039302 463 NILMPSN 469 (479)
Q Consensus 463 ~iw~~~~ 469 (479)
.+|+..-
T Consensus 281 tlwke~~ 287 (299)
T KOG1332|consen 281 TLWKENV 287 (299)
T ss_pred EEEEeCC
Confidence 9998753
No 46
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-29 Score=251.48 Aligned_cols=264 Identities=19% Similarity=0.323 Sum_probs=200.7
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcc------ccc------------cc-cccc--------------
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLN------ALA------------ES-ETVA-------------- 213 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~------~~~------------~~-~~~~-------------- 213 (479)
+|.+.|+++.|+++| ++||+|+.||.|+||.+..... ... .+ ....
T Consensus 265 ah~gaIw~mKFS~DG-KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDG-KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCCcEEEEEeCCCC-ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 799999999999999 8999999999999999876110 000 00 0000
Q ss_pred ------CCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEE
Q 039302 214 ------GHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ 287 (479)
Q Consensus 214 ------~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~ 287 (479)
..........+|+..|.||.+.|..|.|+.++ +|++++.|.+|+||++..... .....|...|+||+
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~C-----L~~F~HndfVTcVa 416 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKEC-----LKVFSHNDFVTCVA 416 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcce-----eeEEecCCeeEEEE
Confidence 00000012457888899999999999999876 899999999999999986544 23567999999999
Q ss_pred ECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe
Q 039302 288 WSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF 367 (479)
Q Consensus 288 ~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~ 367 (479)
|+|.+.++|++|+.||.||||++...+ +.....-..-|++++|.|+| ...+.|+.+|.+++|+.+..+ ....+
T Consensus 417 FnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~Dl~~lITAvcy~PdG-k~avIGt~~G~C~fY~t~~lk----~~~~~ 489 (712)
T KOG0283|consen 417 FNPVDDRYFISGSLDGKVRLWSISDKK--VVDWNDLRDLITAVCYSPDG-KGAVIGTFNGYCRFYDTEGLK----LVSDF 489 (712)
T ss_pred ecccCCCcEeecccccceEEeecCcCe--eEeehhhhhhheeEEeccCC-ceEEEEEeccEEEEEEccCCe----EEEee
Confidence 999998899999999999999998864 33343344789999999998 899999999999999999877 34333
Q ss_pred ec--C------CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC
Q 039302 368 EY--H------KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK 439 (479)
Q Consensus 368 ~~--h------~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~ 439 (479)
.- | ...||.++|.|.....+++.+.|.+|+|+|++...-. ..+..+....
T Consensus 490 ~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv----------------------~KfKG~~n~~ 547 (712)
T KOG0283|consen 490 HIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV----------------------HKFKGFRNTS 547 (712)
T ss_pred eEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh----------------------hhhcccccCC
Confidence 21 1 2279999999977777888899999999999654311 2222222223
Q ss_pred CeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 440 DLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 440 ~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
.-....|..++. .|+++++|. |+||+..
T Consensus 548 SQ~~Asfs~Dgk-~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 548 SQISASFSSDGK-HIVSASEDSWVYIWKND 576 (712)
T ss_pred cceeeeEccCCC-EEEEeecCceEEEEeCC
Confidence 455678889886 666666777 9999973
No 47
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=2e-28 Score=210.80 Aligned_cols=210 Identities=22% Similarity=0.306 Sum_probs=181.6
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|+..|..+.|.-+| +.++|||+||+++|||+.. ..+...+ .|..+|+++..+
T Consensus 77 ~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~---------------------~~~qR~~-~~~spVn~vvlh 133 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRS---------------------LSCQRNY-QHNSPVNTVVLH 133 (311)
T ss_pred eEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccC---------------------cccchhc-cCCCCcceEEec
Confidence 4788999999999999999 8999999999999999987 2333334 467899999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-----cee
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK-----SAL 317 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~-----~~~ 317 (479)
|+.. .|++|+.+|.|++||+....... ........+|.++...|+|. .++.+...|...+|++-... .++
T Consensus 134 pnQt-eLis~dqsg~irvWDl~~~~c~~---~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~~~s~l~P~ 208 (311)
T KOG0315|consen 134 PNQT-ELISGDQSGNIRVWDLGENSCTH---ELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQTASELEPV 208 (311)
T ss_pred CCcc-eEEeecCCCcEEEEEccCCcccc---ccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCCccccceEh
Confidence 9987 99999999999999998753321 22333446899999999999 99999999999999987642 267
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.++.+|...+..+.++|++ ++||++|.|.+++||+....-. ....+.+|..+++..+||.++ .+|++|+.|++++
T Consensus 209 ~k~~ah~~~il~C~lSPd~-k~lat~ssdktv~iwn~~~~~k---le~~l~gh~rWvWdc~FS~dg-~YlvTassd~~~r 283 (311)
T KOG0315|consen 209 HKFQAHNGHILRCLLSPDV-KYLATCSSDKTVKIWNTDDFFK---LELVLTGHQRWVWDCAFSADG-EYLVTASSDHTAR 283 (311)
T ss_pred hheecccceEEEEEECCCC-cEEEeecCCceEEEEecCCcee---eEEEeecCCceEEeeeeccCc-cEEEecCCCCcee
Confidence 7889999999999999999 9999999999999999998732 677889999999999999955 9999999999999
Q ss_pred EEECCCCC
Q 039302 398 IWDLSLEK 405 (479)
Q Consensus 398 iwdl~~~~ 405 (479)
+|+++..+
T Consensus 284 lW~~~~~k 291 (311)
T KOG0315|consen 284 LWDLSAGK 291 (311)
T ss_pred ecccccCc
Confidence 99999885
No 48
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=1.6e-29 Score=246.92 Aligned_cols=253 Identities=20% Similarity=0.300 Sum_probs=214.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.++.|..++|..++|.-.....+|.+++.+.+++|++.. ..+ ..+.||...|.+|+..
T Consensus 317 k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~---------------------~~c-~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 317 KQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPT---------------------SYC-QIIPGHTEAVLSLDVW 374 (775)
T ss_pred hhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCC---------------------Cce-EEEeCchhheeeeeec
Confidence 456788999999999987778899999999999998776 222 3788999999999955
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc----eee
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS----ALM 318 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~----~~~ 318 (479)
.+|. +|+||+.|.++++|.++.+...........+|+..|.+++++..+..+|+++|.|.+|++|+++..+. ...
T Consensus 375 ~~g~-llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~ 453 (775)
T KOG0319|consen 375 SSGD-LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVL 453 (775)
T ss_pred ccCc-EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccccccee
Confidence 5565 99999999999999996554444445667899999999999999988999999999999999987321 111
Q ss_pred ----EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 319 ----SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 319 ----~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
...+|...||+++.+|+. .+|||||.|.+.+||++.... ...++.+|+..|++|.|+|.+ .++||+|.|.
T Consensus 454 ~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~----l~~vLsGH~RGvw~V~Fs~~d-q~laT~SgD~ 527 (775)
T KOG0319|consen 454 TCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLR----LLGVLSGHTRGVWCVSFSKND-QLLATCSGDK 527 (775)
T ss_pred hhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCce----EEEEeeCCccceEEEEecccc-ceeEeccCCc
Confidence 236899999999999999 999999999999999999766 899999999999999999976 9999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+|+||.+....+ +....||. .|..+.|-.++. .|+|++.|| +++|++.+-
T Consensus 528 TvKIW~is~fSC-------------------------lkT~eGH~~aVlra~F~~~~~-qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 528 TVKIWSISTFSC-------------------------LKTFEGHTSAVLRASFIRNGK-QLISAGADGLIKLWNIKTN 579 (775)
T ss_pred eEEEEEecccee-------------------------eeeecCccceeEeeeeeeCCc-EEEeccCCCcEEEEeccch
Confidence 999999998743 33334444 799999999986 677777788 999998764
No 49
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.5e-30 Score=253.61 Aligned_cols=243 Identities=22% Similarity=0.434 Sum_probs=210.8
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
-.++.|+|.....++|||++..|.|.+||++... ..+.+..|..|...+.+++|++..+++|
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~------------------rnk~l~~f~EH~Rs~~~ldfh~tep~il 149 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSI------------------RNKLLTVFNEHERSANKLDFHSTEPNIL 149 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccc------------------cchhhhHhhhhccceeeeeeccCCccEE
Confidence 3567788987668999999999999999998731 2456678899999999999999999999
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
+||+.||.|++||++.... ...+.+...+|++++|+|...+.|+++.+.|.+++||+|....+...+.+|.++|.|
T Consensus 150 iSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c 225 (839)
T KOG0269|consen 150 ISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLC 225 (839)
T ss_pred EecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEE
Confidence 9999999999999987654 355777888999999999998899999999999999999998889999999999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC--CCcEEEEECCCCCCh
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA--DNQLTIWDLSLEKDE 407 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~--Dg~I~iwdl~~~~~~ 407 (479)
+.|+|++ .+|||||.|+.|+|||+..... .++.++. -..+|.+|+|-|...+.||+++. |-.|+|||++..
T Consensus 226 ~nwhPnr-~~lATGGRDK~vkiWd~t~~~~--~~~~tIn-Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRP--- 298 (839)
T KOG0269|consen 226 LNWHPNR-EWLATGGRDKMVKIWDMTDSRA--KPKHTIN-TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRP--- 298 (839)
T ss_pred EeecCCC-ceeeecCCCccEEEEeccCCCc--cceeEEe-ecceeeeeeeccCccchhhhhhccccceEEEEeeccc---
Confidence 9999977 9999999999999999986652 2455554 36799999999998889999886 789999999987
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
-+|...+..|. ..++.++|-...+.++.+++.|+
T Consensus 299 ------------------YIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 299 ------------------YIPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred ------------------cccceeeeccC--ccccceeccCCCceeeEeecCcc
Confidence 55666666665 56999999887778999999998
No 50
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=3.9e-28 Score=228.82 Aligned_cols=257 Identities=19% Similarity=0.318 Sum_probs=203.7
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec---CCCCceEE
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG---GHKDEGYA 238 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~ 238 (479)
......|..-|+|++|+|+| .++||.+.||+|.|||-.+ ++.+..+. +|.+.|++
T Consensus 183 k~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGkt---------------------ge~vg~l~~~~aHkGsIfa 240 (603)
T KOG0318|consen 183 KSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKT---------------------GEKVGELEDSDAHKGSIFA 240 (603)
T ss_pred eecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCC---------------------ccEEEEecCCCCccccEEE
Confidence 34567899999999999999 7899999999999999877 55566666 89999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCcc---------------------------------------ccCCCCcccC
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATW---------------------------------------NVDPNPFIGH 279 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~---------------------------------------~~~~~~~~~h 279 (479)
|+|+|++. +|+|++.|.+++|||+.+.... ......+.+|
T Consensus 241 lsWsPDs~-~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GH 319 (603)
T KOG0318|consen 241 LSWSPDST-QFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGH 319 (603)
T ss_pred EEECCCCc-eEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccc
Confidence 99999998 9999999999999999764310 0012345689
Q ss_pred CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce----------eeEEecC--------------------------
Q 039302 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA----------LMSFKAH-------------------------- 323 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~----------~~~~~~h-------------------------- 323 (479)
...|+++..+|++. .|.+|+.||.|.-||..++... +..+..+
T Consensus 320 nK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~ 398 (603)
T KOG0318|consen 320 NKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTK 398 (603)
T ss_pred ccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccc
Confidence 99999999999997 9999999999999998654211 0000000
Q ss_pred --------------------------------------------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 039302 324 --------------------------------------------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359 (479)
Q Consensus 324 --------------------------------------------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~ 359 (479)
.-...+++++|++ ..+|.|+.||.|+||.+.....
T Consensus 399 ~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~-~~vaVGG~Dgkvhvysl~g~~l 477 (603)
T KOG0318|consen 399 SEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDG-SEVAVGGQDGKVHVYSLSGDEL 477 (603)
T ss_pred cceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCC-CEEEEecccceEEEEEecCCcc
Confidence 0013467788888 8999999999999999987552
Q ss_pred CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC
Q 039302 360 GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK 439 (479)
Q Consensus 360 ~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~ 439 (479)
.....+..|.++|++|+++|++ .+||+|...+.|.+||+..... ...-...|. .
T Consensus 478 --~ee~~~~~h~a~iT~vaySpd~-~yla~~Da~rkvv~yd~~s~~~---------------------~~~~w~FHt--a 531 (603)
T KOG0318|consen 478 --KEEAKLLEHRAAITDVAYSPDG-AYLAAGDASRKVVLYDVASREV---------------------KTNRWAFHT--A 531 (603)
T ss_pred --cceeeeecccCCceEEEECCCC-cEEEEeccCCcEEEEEcccCce---------------------ecceeeeee--e
Confidence 1445667799999999999965 9999999999999999987631 112233344 5
Q ss_pred CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 440 DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 440 ~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.|.+++|+|+.. ++|+++.|. |.||.+..-
T Consensus 532 kI~~~aWsP~n~-~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 532 KINCVAWSPNNK-LVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred eEEEEEeCCCce-EEEeccccceEEEEEccCh
Confidence 799999999985 999999998 999987653
No 51
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=8.8e-29 Score=251.92 Aligned_cols=322 Identities=22% Similarity=0.345 Sum_probs=239.6
Q ss_pred eeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCcccc
Q 039302 73 CLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEE 152 (479)
Q Consensus 73 ~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 152 (479)
-+++++-||. ..+.+|.|-. +..+.||+...+..... +.++
T Consensus 16 IfSIdv~pdg-----------~~~aTgGq~~---d~~~~iW~~~~vl~~~~-------------------------~~~~ 56 (942)
T KOG0973|consen 16 IFSIDVHPDG-----------VKFATGGQVL---DGGIVIWSQDPVLDEKE-------------------------EKNE 56 (942)
T ss_pred EEEEEecCCc-----------eeEecCCccc---cccceeeccccccchhh-------------------------hhhc
Confidence 4678888873 3577776543 45566998854321111 0111
Q ss_pred CCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC
Q 039302 153 EGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH 232 (479)
Q Consensus 153 ~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 232 (479)
..|........|.+.|+|++|+|+| .+||+||+|+.|.||.... ....... -...+.......+...++.+|
T Consensus 57 ----~l~k~l~~m~~h~~sv~CVR~S~dG-~~lAsGSDD~~v~iW~~~~-~~~~~~f--gs~g~~~~vE~wk~~~~l~~H 128 (942)
T KOG0973|consen 57 ----NLPKHLCTMDDHDGSVNCVRFSPDG-SYLASGSDDRLVMIWERAE-IGSGTVF--GSTGGAKNVESWKVVSILRGH 128 (942)
T ss_pred ----ccchhheeeccccCceeEEEECCCC-CeEeeccCcceEEEeeecc-cCCcccc--cccccccccceeeEEEEEecC
Confidence 1355667899999999999999999 8999999999999999885 1000000 001223334467888999999
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
...|..++|+|++. +|++++.|++|.||+..+... ...+.+|.+.|..+.|.|-|+ +||+-+.|++|+||.+..
T Consensus 129 ~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~----~~vl~~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~d 202 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFEL----LKVLRGHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSD 202 (942)
T ss_pred CCccceeccCCCcc-EEEEecccceEEEEcccccee----eeeeecccccccceEECCccC-eeeeecCCceEEEEEccc
Confidence 99999999999998 999999999999999988633 367899999999999999999 999999999999999776
Q ss_pred CCceeeEEecC------CCCEEEEEEcCCCCcEEEEEeC----CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 313 GKSALMSFKAH------NADVNVISWNRLASCLLASGSD----DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 313 ~~~~~~~~~~h------~~~v~~l~~~p~~~~~l~sgs~----dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.. ....+..+ ..-+..++|+|+| .+|++.-. -.++.|.+..+.+ .-..|-+|.++++++.|+|.
T Consensus 203 w~-i~k~It~pf~~~~~~T~f~RlSWSPDG-~~las~nA~n~~~~~~~IieR~tWk----~~~~LvGH~~p~evvrFnP~ 276 (942)
T KOG0973|consen 203 WG-IEKSITKPFEESPLTTFFLRLSWSPDG-HHLASPNAVNGGKSTIAIIERGTWK----VDKDLVGHSAPVEVVRFNPK 276 (942)
T ss_pred ce-eeEeeccchhhCCCcceeeecccCCCc-CeecchhhccCCcceeEEEecCCce----eeeeeecCCCceEEEEeChH
Confidence 43 33343322 3457899999999 78877532 2378888887766 67889999999999999983
Q ss_pred -----C-------C----CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec-CCCCeeeEE
Q 039302 383 -----E-------G----STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-GQKDLKELH 445 (479)
Q Consensus 383 -----~-------~----~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-g~~~V~~v~ 445 (479)
. . .++|+||.|++|.||.....+ .++..|. ....|.+++
T Consensus 277 lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R------------------------Pl~vi~~lf~~SI~Dms 332 (942)
T KOG0973|consen 277 LFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR------------------------PLFVIHNLFNKSIVDMS 332 (942)
T ss_pred HhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC------------------------chhhhhhhhcCceeeee
Confidence 1 1 178999999999999996654 2333333 234799999
Q ss_pred EeCCCCcEEEEEcCCC-ceEEeeecc--CCCCCCCC
Q 039302 446 WHTQVPGMIVSTAADG-FNILMPSNI--QSTLPQDA 478 (479)
Q Consensus 446 w~p~~~~ll~s~~~dg-i~iw~~~~~--~~~~~ed~ 478 (479)
|+|+|- .|..|+.|| |.++++..- .+-++++|
T Consensus 333 WspdG~-~LfacS~DGtV~~i~Fee~ElG~~ls~ee 367 (942)
T KOG0973|consen 333 WSPDGF-SLFACSLDGTVALIHFEEKELGVALSEEE 367 (942)
T ss_pred EcCCCC-eEEEEecCCeEEEEEcchHHhCcccChhh
Confidence 999995 666777777 888877553 55555544
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=5e-28 Score=228.23 Aligned_cols=246 Identities=26% Similarity=0.438 Sum_probs=205.7
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|.+.|++++|+|++ .++++++.+|.|++|++.. ......+..|...+..+.|++
T Consensus 4 ~~~~h~~~i~~~~~~~~~-~~l~~~~~~g~i~i~~~~~---------------------~~~~~~~~~~~~~i~~~~~~~ 61 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLET---------------------GELLRTLKGHTGPVRDVAASA 61 (289)
T ss_pred HhcccCCCEEEEEEcCCC-CEEEEeecCcEEEEEEeeC---------------------CCcEEEEecCCcceeEEEECC
Confidence 345899999999999998 6888889999999999987 456677888999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
++. .|++++.+|.|++|++..... ...+..|...+.++.|+|++. ++++++.+|.|++||+++.+ ....+..|
T Consensus 62 ~~~-~l~~~~~~~~i~i~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~~~~~~~ 134 (289)
T cd00200 62 DGT-YLASGSSDKTIRLWDLETGEC----VRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK-CLTTLRGH 134 (289)
T ss_pred CCC-EEEEEcCCCeEEEEEcCcccc----eEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcE-EEEEeccC
Confidence 996 999999999999999987433 244667888999999999976 88888889999999999764 66677789
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
...+.+++|+|++ .++++++.+|.|++||++..+ ++..+..|...|+++.|+|++ ..|++++.|+.|++||++.
T Consensus 135 ~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~ 208 (289)
T cd00200 135 TDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGK----CVATLTGHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLST 208 (289)
T ss_pred CCcEEEEEEcCcC-CEEEEEcCCCcEEEEEccccc----cceeEecCccccceEEECCCc-CEEEEecCCCcEEEEECCC
Confidence 9999999999997 888888889999999999777 678888999999999999965 7888888899999999987
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.... ..+..|. ..|.++.|+|++ .++++++.++ +.+|++..
T Consensus 209 ~~~~----------------------~~~~~~~--~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 209 GKCL----------------------GTLRGHE--NGVNSVAFSPDG-YLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred Ccee----------------------cchhhcC--CceEEEEEcCCC-cEEEEEcCCCcEEEEEcCC
Confidence 5311 1111232 479999999995 5777777555 99999864
No 53
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=3.1e-29 Score=221.97 Aligned_cols=363 Identities=17% Similarity=0.249 Sum_probs=261.6
Q ss_pred cccCcccccceeccCCCCCCCCCCCCCCeee--cCCc-ccCCCCceeeeC---------hhHHHhhhcccccCceeeEEE
Q 039302 11 TQRRPKERTRTQKKGNGSSSSSIPSLPTKVW--QPGV-DKLEEGEELQCD---------PTAYNSLHAFHIGWPCLSFDI 78 (479)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~~d---------~~~Y~~~~~~~~~wP~ls~~~ 78 (479)
.+--|+|++..+...+++ -++..... -+- .|-+ .+...|-+|+|| |+-|+..+.....-||....+
T Consensus 43 ~~~~PserLl~lv~~gmq-~~~d~~~~-~~~~S~~~~t~p~~~giDle~dadaq~~s~e~~~yEt~ylt~HK~~cR~aaf 120 (430)
T KOG0640|consen 43 NICAPSERLLHLVAKGMQ-AENDGDLR-AVSSSVLLITTPVTAGIDLEFDADAQGSSPEPSEYETKYLTSHKSPCRAAAF 120 (430)
T ss_pred CCCCCHHHHHHHHHHHhh-cccCccee-cccccccceeccCcCceeeeeccccccCCCCCcccceEEEeecccceeeeee
Confidence 455689998888777655 22211110 000 0000 114456778887 677888888888999999998
Q ss_pred eeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 039302 79 LRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGT 158 (479)
Q Consensus 79 ~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 158 (479)
-||.. .+.. |+.+-+|.|++++++-.... . .++.. .+.. ...
T Consensus 121 s~DG~-----------lvAT-----GsaD~SIKildvermlaks~-~------------~em~~-------~~~q--a~h 162 (430)
T KOG0640|consen 121 SPDGS-----------LVAT-----GSADASIKILDVERMLAKSK-P------------KEMIS-------GDTQ--ARH 162 (430)
T ss_pred CCCCc-----------EEEc-----cCCcceEEEeehhhhhhhcc-h------------hhhcc-------CCcc--cCC
Confidence 88842 3333 46788999999975433221 1 00100 0001 124
Q ss_pred ceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 159 p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
|.+ ..+..|..+|+++.|+|.. .+|++|+.|++|++||+.+... .+....|+ ...+|.+
T Consensus 163 PvI-RTlYDH~devn~l~FHPre-~ILiS~srD~tvKlFDfsK~sa------------------KrA~K~~q-d~~~vrs 221 (430)
T KOG0640|consen 163 PVI-RTLYDHVDEVNDLDFHPRE-TILISGSRDNTVKLFDFSKTSA------------------KRAFKVFQ-DTEPVRS 221 (430)
T ss_pred ceE-eehhhccCcccceeecchh-heEEeccCCCeEEEEecccHHH------------------HHHHHHhh-ccceeee
Confidence 655 6789999999999999988 8999999999999999987211 12222332 3458999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+.|+|.|. +|+.|..-..+++||+++.+... ...+-..|++.|+++.++++++ +.+++|.||.|+|||--+.+ |+.
T Consensus 222 iSfHPsGe-fllvgTdHp~~rlYdv~T~Qcfv-sanPd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~r-Cv~ 297 (430)
T KOG0640|consen 222 ISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFV-SANPDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNR-CVR 297 (430)
T ss_pred EeecCCCc-eEEEecCCCceeEEeccceeEee-ecCcccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHH-HHH
Confidence 99999998 99999999999999999866543 3457788999999999999999 99999999999999988875 666
Q ss_pred EE-ecCC-CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-----CCeEEEEEeCCCCCEEEEEe
Q 039302 319 SF-KAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-----HPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 319 ~~-~~h~-~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-----~~I~~v~~sp~~~~~las~s 391 (479)
++ ++|. ..|.+..|..++ .+|++.+.|..+++|.+.++. ++..+.+-. .--+...|+.+...+|.---
T Consensus 298 t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vkLWEi~t~R----~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDE 372 (430)
T KOG0640|consen 298 TIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVKLWEISTGR----MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDE 372 (430)
T ss_pred HHHhhcCCceeeeEEEccCC-eEEeecCCcceeeeeeecCCc----eEEEEecCCcccchhhhhhhhhcCccceEEcccc
Confidence 66 5665 468999999999 999999999999999999988 677776531 11245567776544554444
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
..+.++-||.++.... ..+-..|. ..+..+.-+|.+| .+++|++|. .++|.-
T Consensus 373 as~slcsWdaRtadr~---------------------~l~slgHn--~a~R~i~HSP~~p-~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 373 ASNSLCSWDARTADRV---------------------ALLSLGHN--GAVRWIVHSPVEP-AFMTCSDDFRARFWYR 425 (430)
T ss_pred ccCceeeccccchhhh---------------------hhcccCCC--CCceEEEeCCCCC-ceeeecccceeeeeee
Confidence 5778999999987531 01222332 4799999999998 677788887 888864
No 54
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=6.6e-28 Score=260.26 Aligned_cols=258 Identities=19% Similarity=0.284 Sum_probs=200.0
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
+..|.+.|++++|+|++ .++|||+.||.|+||++........ ....+...+.+ ...+.+++|++.
T Consensus 479 ~~~~~~~V~~i~fs~dg-~~latgg~D~~I~iwd~~~~~~~~~-------------~~~~~~~~~~~-~~~v~~l~~~~~ 543 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDG-EFFATAGVNKKIKIFECESIIKDGR-------------DIHYPVVELAS-RSKLSGICWNSY 543 (793)
T ss_pred ccCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEECCccccccc-------------ccccceEEecc-cCceeeEEeccC
Confidence 34589999999999998 7899999999999999864211000 00123344443 458999999987
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
...+|++|+.||+|+|||+.++.. ...+.+|...|++++|+|.+..+|++|+.||+|++||++++. ++..+..+
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~----~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~-~~~~~~~~- 617 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQL----VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV-SIGTIKTK- 617 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeE----EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc-EEEEEecC-
Confidence 545999999999999999977543 245778999999999998544499999999999999999875 55566544
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
..|.++.|++..+.+|++|+.||.|++||+++... ++..+.+|...|+++.|.+ +.+|++++.|++|+|||++..
T Consensus 618 ~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~---~~~~~~~h~~~V~~v~f~~--~~~lvs~s~D~~ikiWd~~~~ 692 (793)
T PLN00181 618 ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKL---PLCTMIGHSKTVSYVRFVD--SSTLVSSSTDNTLKLWDLSMS 692 (793)
T ss_pred CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCc---cceEecCCCCCEEEEEEeC--CCEEEEEECCCEEEEEeCCCC
Confidence 67999999765459999999999999999998653 5778889999999999974 478999999999999999754
Q ss_pred CChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 405 KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
... .....+....+| ..+..++|+|++. +|++++.|+ +.+|+..
T Consensus 693 ~~~-------------------~~~~~l~~~~gh~~~i~~v~~s~~~~-~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 693 ISG-------------------INETPLHSFMGHTNVKNFVGLSVSDG-YIATGSETNEVFVYHKA 738 (793)
T ss_pred ccc-------------------cCCcceEEEcCCCCCeeEEEEcCCCC-EEEEEeCCCEEEEEECC
Confidence 210 001122223333 3688999999985 888888888 9999853
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=2.6e-29 Score=249.14 Aligned_cols=249 Identities=21% Similarity=0.333 Sum_probs=212.8
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
-...|-.++|+|..|.+| ++-..|.|++||..- +..+..|..|.++|.+++|+|..+
T Consensus 8 kSsRvKglsFHP~rPwIL-tslHsG~IQlWDYRM---------------------~tli~rFdeHdGpVRgv~FH~~qp- 64 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPWIL-TSLHSGVIQLWDYRM---------------------GTLIDRFDEHDGPVRGVDFHPTQP- 64 (1202)
T ss_pred ccccccceecCCCCCEEE-EeecCceeeeehhhh---------------------hhHHhhhhccCCccceeeecCCCC-
Confidence 356788999999996555 668999999999987 788899999999999999999999
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+++||+.|-.|++|+..+... ..++.||-..|..+.|++.-+ .++|+|+|.+|+||+..+.+ ++..+.+|+..|
T Consensus 65 lFVSGGDDykIkVWnYk~rrc----lftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~-~iavltGHnHYV 138 (1202)
T KOG0292|consen 65 LFVSGGDDYKIKVWNYKTRRC----LFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRK-CIAVLTGHNHYV 138 (1202)
T ss_pred eEEecCCccEEEEEeccccee----hhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCc-eEEEEecCceEE
Confidence 999999999999999987554 467889999999999999998 99999999999999999986 899999999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-------------------------CceEEEeecCCCCeEEEEEeCC
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGG-------------------------DSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~-------------------------~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.|.+|+|.. .+++++|-|.+|+|||+...+.. ...-+.+.+|...|+-++|+|.
T Consensus 139 McAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 139 MCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPT 217 (1202)
T ss_pred EeeccCCcc-ceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCC
Confidence 999999988 89999999999999998643221 0122456889999999999997
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
- .+|++|+.|..|++|.++..+. ........|. ..|+++-|||... +|+|.++|+
T Consensus 218 l-pliVSG~DDRqVKlWrmnetKa--------------------WEvDtcrgH~--nnVssvlfhp~q~-lIlSnsEDks 273 (1202)
T KOG0292|consen 218 L-PLIVSGADDRQVKLWRMNETKA--------------------WEVDTCRGHY--NNVSSVLFHPHQD-LILSNSEDKS 273 (1202)
T ss_pred c-ceEEecCCcceeeEEEeccccc--------------------eeehhhhccc--CCcceEEecCccc-eeEecCCCcc
Confidence 7 8999999999999999986531 1112334444 5799999999874 899999998
Q ss_pred ceEEeeecc
Q 039302 462 FNILMPSNI 470 (479)
Q Consensus 462 i~iw~~~~~ 470 (479)
|+||++..-
T Consensus 274 irVwDm~kR 282 (1202)
T KOG0292|consen 274 IRVWDMTKR 282 (1202)
T ss_pred EEEEecccc
Confidence 999998654
No 56
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.97 E-value=1.6e-28 Score=215.79 Aligned_cols=319 Identities=20% Similarity=0.361 Sum_probs=242.4
Q ss_pred hhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCC
Q 039302 64 LHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSD 143 (479)
Q Consensus 64 ~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (479)
++.++-.||-....|..-.. ...++..|+..+. ..|.|.|.++.
T Consensus 38 iy~Y~ap~~lya~~Ws~~~~--------~~~rla~gS~~Ee-~~Nkvqiv~ld--------------------------- 81 (364)
T KOG0290|consen 38 IYTYNAPWPLYAMNWSVRPD--------KKFRLAVGSFIEE-YNNKVQIVQLD--------------------------- 81 (364)
T ss_pred EEEecCCCceeeeccccCCC--------cceeEEEeeeccc-cCCeeEEEEEc---------------------------
Confidence 34567789999999985422 2468999998874 67999999881
Q ss_pred CCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCC----CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCc
Q 039302 144 SDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQN----PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQ 219 (479)
Q Consensus 144 ~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~ 219 (479)
++. ...+....+.|.-+++.+.|.|+. +.+|||.+ -.++||.+............
T Consensus 82 ----~~s-------~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~-------- 140 (364)
T KOG0290|consen 82 ----EDS-------GELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSV-------- 140 (364)
T ss_pred ----cCC-------CceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhh--------
Confidence 000 112222337899999999999976 67898854 36999999863222110000
Q ss_pred cccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE
Q 039302 220 VLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC 299 (479)
Q Consensus 220 ~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~ 299 (479)
-....-..+..++++.+|+...+++|.+++-|-+..|||+.++.... ....+.+|...|.+|+|...+..+||++
T Consensus 141 ----L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-vkTQLIAHDKEV~DIaf~~~s~~~FASv 215 (364)
T KOG0290|consen 141 ----LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-VKTQLIAHDKEVYDIAFLKGSRDVFASV 215 (364)
T ss_pred ----hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-eeeEEEecCcceeEEEeccCccceEEEe
Confidence 00011223566999999999988899999999999999998852211 1345778999999999999888899999
Q ss_pred eCCCcEEEEEcCCCCceeeEEecC--CCCEEEEEEcCCCCcEEEEEeCCC-eEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 300 SVDGNIAIWDTRVGKSALMSFKAH--NADVNVISWNRLASCLLASGSDDG-TFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 300 s~dg~I~iwD~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~~l~sgs~dg-~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
|.||.+|+||+|........+... ..+...++|++...+++|+-..|+ .|.|.|+|.... ++..+++|.+.|+.
T Consensus 216 gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~t---pva~L~~H~a~VNg 292 (364)
T KOG0290|consen 216 GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCT---PVARLRNHQASVNG 292 (364)
T ss_pred cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCc---ceehhhcCcccccc
Confidence 999999999999886544444332 467899999999999999877665 799999999876 99999999999999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s 456 (479)
|+|.|+....|+++|.|.++.|||+...... ....|-+.+.. ...|+.++|++..+..|+.
T Consensus 293 IaWaPhS~~hictaGDD~qaliWDl~q~~~~-----------------~~~dPilay~a--~~EVNqi~Ws~~~~Dwiai 353 (364)
T KOG0290|consen 293 IAWAPHSSSHICTAGDDCQALIWDLQQMPRE-----------------NGEDPILAYTA--GGEVNQIQWSSSQPDWIAI 353 (364)
T ss_pred eEecCCCCceeeecCCcceEEEEeccccccc-----------------CCCCchhhhhc--cceeeeeeecccCCCEEEE
Confidence 9999999999999999999999999876321 11223444443 3579999999988888988
Q ss_pred EcCCCceEEe
Q 039302 457 TAADGFNILM 466 (479)
Q Consensus 457 ~~~dgi~iw~ 466 (479)
+....+.|.+
T Consensus 354 ~~~kkleiLR 363 (364)
T KOG0290|consen 354 CFGKKLEILR 363 (364)
T ss_pred EecCeeeEEe
Confidence 8888777665
No 57
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=6.6e-28 Score=242.18 Aligned_cols=215 Identities=16% Similarity=0.289 Sum_probs=172.1
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
+.+|.+.|++++|+|.+..+||+|+.||+|+|||+....... ....++..+.+|...|.+++|+|.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~--------------~~~~~l~~L~gH~~~V~~l~f~P~ 136 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQ--------------NISDPIVHLQGHTKKVGIVSFHPS 136 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCcccc--------------ccCcceEEecCCCCcEEEEEeCcC
Confidence 579999999999999544799999999999999997621100 013567889999999999999998
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
+.++|++|+.|+.|+|||+.++.. ...+.+|...|.+++|+|++. +|++++.||+|+|||+++++ .+..+.+|.
T Consensus 137 ~~~iLaSgs~DgtVrIWDl~tg~~----~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~-~v~tl~~H~ 210 (493)
T PTZ00421 137 AMNVLASAGADMVVNVWDVERGKA----VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGT-IVSSVEAHA 210 (493)
T ss_pred CCCEEEEEeCCCEEEEEECCCCeE----EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCc-EEEEEecCC
Confidence 755999999999999999987543 244678999999999999998 99999999999999999986 667778887
Q ss_pred CC-EEEEEEcCCCCcEEEEEe----CCCeEEEEeCCCCCCCCceEEEeecCC-CCeEEEEEeCCCCCEEEEEe-CCCcEE
Q 039302 325 AD-VNVISWNRLASCLLASGS----DDGTFSIHDLRLLKGGDSVVAHFEYHK-HPVTSIEWSPHEGSTLAVSS-ADNQLT 397 (479)
Q Consensus 325 ~~-v~~l~~~p~~~~~l~sgs----~dg~i~iwDlr~~~~~~~~~~~~~~h~-~~I~~v~~sp~~~~~las~s-~Dg~I~ 397 (479)
.. +..+.|.+++ ..|++++ .|+.|++||+|+... ++.....+. ..+....|++++ .+|++++ .|+.|+
T Consensus 211 ~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~VklWDlr~~~~---p~~~~~~d~~~~~~~~~~d~d~-~~L~lggkgDg~Ir 285 (493)
T PTZ00421 211 SAKSQRCLWAKRK-DLIITLGCSKSQQRQIMLWDTRKMAS---PYSTVDLDQSSALFIPFFDEDT-NLLYIGSKGEGNIR 285 (493)
T ss_pred CCcceEEEEcCCC-CeEEEEecCCCCCCeEEEEeCCCCCC---ceeEeccCCCCceEEEEEcCCC-CEEEEEEeCCCeEE
Confidence 64 4578899987 4555443 479999999998764 555554443 455666788855 7777776 599999
Q ss_pred EEECCCC
Q 039302 398 IWDLSLE 404 (479)
Q Consensus 398 iwdl~~~ 404 (479)
+||+..+
T Consensus 286 iwdl~~~ 292 (493)
T PTZ00421 286 CFELMNE 292 (493)
T ss_pred EEEeeCC
Confidence 9999876
No 58
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=4.1e-30 Score=230.61 Aligned_cols=231 Identities=22% Similarity=0.388 Sum_probs=199.3
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
....|.|+.+.. ..+++|..|.+|+|||.+. ..++..+.||++.|.|+.|.. .
T Consensus 196 ~skgVYClQYDD---~kiVSGlrDnTikiWD~n~---------------------~~c~~~L~GHtGSVLCLqyd~--r- 248 (499)
T KOG0281|consen 196 NSKGVYCLQYDD---EKIVSGLRDNTIKIWDKNS---------------------LECLKILTGHTGSVLCLQYDE--R- 248 (499)
T ss_pred cCCceEEEEecc---hhhhcccccCceEEecccc---------------------HHHHHhhhcCCCcEEeeeccc--e-
Confidence 346799998864 4688999999999999987 678889999999999999965 3
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--eeeEEecCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--ALMSFKAHNA 325 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~~~~~~~h~~ 325 (479)
.|++|+.|.+|++||.+++.. ...+.+|...|..+.|+. . ++++||.|.+|.+||+..+.. +...+.+|..
T Consensus 249 viisGSSDsTvrvWDv~tge~----l~tlihHceaVLhlrf~n--g-~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA 321 (499)
T KOG0281|consen 249 VIVSGSSDSTVRVWDVNTGEP----LNTLIHHCEAVLHLRFSN--G-YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA 321 (499)
T ss_pred EEEecCCCceEEEEeccCCch----hhHHhhhcceeEEEEEeC--C-EEEEecCCceeEEEeccCchHHHHHHHHhhhhh
Confidence 899999999999999999766 356889999999999983 3 899999999999999988742 4455689999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.||.+.|+. .+|++++.|.+|++|++.+.. .+.++.+|...|.|+++. +.++++||.|++|++||+..+.
T Consensus 322 aVNvVdfd~---kyIVsASgDRTikvW~~st~e----fvRtl~gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~ 391 (499)
T KOG0281|consen 322 AVNVVDFDD---KYIVSASGDRTIKVWSTSTCE----FVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA 391 (499)
T ss_pred heeeecccc---ceEEEecCCceEEEEecccee----eehhhhcccccceehhcc---CeEEEecCCCceEEEEeccccH
Confidence 999999985 699999999999999999988 899999999999999985 4999999999999999999885
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+ +...+||. -|.++.|... -|+||+.|| |+||++...
T Consensus 392 c-------------------------LRvLeGHEeLvRciRFd~k---rIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 392 C-------------------------LRVLEGHEELVRCIRFDNK---RIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred H-------------------------HHHHhchHHhhhheeecCc---eeeeccccceEEEEecccc
Confidence 3 23334444 4999999763 689999999 999998654
No 59
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.97 E-value=1.7e-28 Score=215.35 Aligned_cols=314 Identities=21% Similarity=0.304 Sum_probs=226.5
Q ss_pred eEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcce
Q 039302 93 TAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCV 172 (479)
Q Consensus 93 ~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V 172 (479)
...|++||+..+ .+|.|.++++. ++ ...++...+..|.|+|
T Consensus 26 ~icFlvgTnslK-~dNqVhll~~d-------------------------------~e-------~s~l~skvf~h~agEv 66 (370)
T KOG1007|consen 26 HICFLVGTNSLK-EDNQVHLLRLD-------------------------------SE-------GSELLSKVFFHHAGEV 66 (370)
T ss_pred ceEEEEeccccC-CcceeEEEEec-------------------------------Cc-------cchhhhhhhhcCCcce
Confidence 467999999987 45999999882 11 1234445677899999
Q ss_pred eEEEEecCCCcEEEEEeCC-------ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCC
Q 039302 173 NRIRAMSQNPHICASWADT-------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPV 244 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~d-------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~ 244 (479)
+.++.+|.++.+|+|+..+ -.+-||.+........ ....+.+..+. .+-+.+.|+.|.|+
T Consensus 67 w~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~------------~~tlE~v~~Ldteavg~i~cvew~Pn 134 (370)
T KOG1007|consen 67 WDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN------------SSTLECVASLDTEAVGKINCVEWEPN 134 (370)
T ss_pred ehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc------------cchhhHhhcCCHHHhCceeeEEEcCC
Confidence 9999999999999998663 2367999987543311 01133444443 34458999999998
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccc--cCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWN--VDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~--~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
+. .|++-. |..|.+|++....... +....-.+|....++-+|+|.. .+.+++.+ |+++..||+|+.++....-.
T Consensus 135 s~-klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 135 SD-KLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred CC-eeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhh
Confidence 87 888777 8899999998765421 1111223356678889999933 33566554 89999999998864444457
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...|..+.|+|+...+|++|++||.|+|||.|+.+. ++..+.+|..+|++|.|+|....+|++||.|..|.+|..
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc---cccccCCCceEEEEEEecCccceEEEecCCCceeEEEec
Confidence 89999999999999989999999999999999999887 999999999999999999988899999999999999988
Q ss_pred CCCCChHHHHHHhhhcc--cccCCCC---CCCCceEEee-cCCCCeeeEEEeCCCCcEEEEEcCCC-ceE
Q 039302 402 SLEKDEEEEAEFKAKTR--EQVNAPE---DLPPQLLFIH-QGQKDLKELHWHTQVPGMIVSTAADG-FNI 464 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~--~~~~~~~---~~p~~l~~~h-~g~~~V~~v~w~p~~~~ll~s~~~dg-i~i 464 (479)
.....+... .+..... ......+ .++..++... .+...|.+++|+.-.|+++||-+.|| +.|
T Consensus 289 ~svSSE~qi-~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 289 SSVSSEQQI-EFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred ccccccccc-ccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 654321100 0000000 0001111 1222222222 22257999999999999999999999 444
No 60
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=1.4e-27 Score=239.83 Aligned_cols=264 Identities=19% Similarity=0.259 Sum_probs=191.7
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC-CCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP-VAP 246 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~ 246 (479)
|-..|+....++++.++ ++++.+..+..|+.......+.. ..... .......+.+|.+.|++++|+| ++.
T Consensus 19 ~~~~i~~~~~~~d~~~~-~~~n~~~~a~~w~~~gg~~v~~~-~~~G~-------~~~~~~~l~GH~~~V~~v~fsP~d~~ 89 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNT-IACNDRFIAVPWQQLGSTAVLKH-TDYGK-------LASNPPILLGQEGPIIDVAFNPFDPQ 89 (493)
T ss_pred ceeccccccccCCCCCc-EeECCceEEEEEecCCceEEeec-ccccc-------CCCCCceEeCCCCCEEEEEEcCCCCC
Confidence 44566667777776444 45577788888876553211100 00000 0111234779999999999999 555
Q ss_pred CeEEEEeCCCeEEEEecCCCCcc---ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATW---NVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
+|++|+.||+|++||+.+.... ......+.+|...|.+++|+|.+.++|++|+.|++|+|||++++. .+..+..|
T Consensus 90 -~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~-~~~~l~~h 167 (493)
T PTZ00421 90 -KLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK-AVEVIKCH 167 (493)
T ss_pred -EEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe-EEEEEcCC
Confidence 9999999999999999764321 111245788999999999999876699999999999999999875 67778889
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC-eEEEEEeCCCCCEEEEEe----CCCcEEE
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP-VTSIEWSPHEGSTLAVSS----ADNQLTI 398 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~-I~~v~~sp~~~~~las~s----~Dg~I~i 398 (479)
...|++++|+|++ .+|++|+.|+.|+|||+|++. .+..+.+|.+. +..+.|.+.+ ..|++++ .|+.|++
T Consensus 168 ~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~----~v~tl~~H~~~~~~~~~w~~~~-~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 168 SDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGT----IVSSVEAHASAKSQRCLWAKRK-DLIITLGCSKSQQRQIML 241 (493)
T ss_pred CCceEEEEEECCC-CEEEEecCCCEEEEEECCCCc----EEEEEecCCCCcceEEEEcCCC-CeEEEEecCCCCCCeEEE
Confidence 9999999999998 899999999999999999987 78888888765 4578899966 4555443 4899999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
||++.... +......+. ...+....|++++..+++++..|+ |++|++.+.
T Consensus 242 WDlr~~~~---------------------p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 242 WDTRKMAS---------------------PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EeCCCCCC---------------------ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 99987632 112222221 234666788998865555554465 999998764
No 61
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.9e-28 Score=233.92 Aligned_cols=243 Identities=22% Similarity=0.330 Sum_probs=202.5
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~~~ 247 (479)
...|+++.|+++| .+||+|..+|.|.|||... .+.+.++.+ |...|-+++|+. .
T Consensus 217 ~~~vtSv~ws~~G-~~LavG~~~g~v~iwD~~~---------------------~k~~~~~~~~h~~rvg~laW~~---~ 271 (484)
T KOG0305|consen 217 EELVTSVKWSPDG-SHLAVGTSDGTVQIWDVKE---------------------QKKTRTLRGSHASRVGSLAWNS---S 271 (484)
T ss_pred CCceEEEEECCCC-CEEEEeecCCeEEEEehhh---------------------ccccccccCCcCceeEEEeccC---c
Confidence 8899999999999 7999999999999999987 455667777 999999999993 3
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
.+.+|+.+|.|..+|++...... ..+.+|...|..++|++++. +||+|+.|+.+.|||..... ++..+..|...|
T Consensus 272 ~lssGsr~~~I~~~dvR~~~~~~---~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~-p~~~~~~H~aAV 346 (484)
T KOG0305|consen 272 VLSSGSRDGKILNHDVRISQHVV---STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPE-PKFTFTEHTAAV 346 (484)
T ss_pred eEEEecCCCcEEEEEEecchhhh---hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCcc-ccEEEeccceee
Confidence 89999999999999998865433 24889999999999999999 99999999999999997764 788999999999
Q ss_pred EEEEEcCCCCcEEEEEe--CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCcEEEEECCCC
Q 039302 328 NVISWNRLASCLLASGS--DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS-ADNQLTIWDLSLE 404 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs--~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s-~Dg~I~iwdl~~~ 404 (479)
.+++|+|....+||+|+ .|++|++||..++. .+..... ...|.+|.|++....++.+-| .++.|.||++.+.
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~----~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGA----RIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCc----Eeccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 99999999989999975 58999999999887 5666553 678999999997644555544 4789999999886
Q ss_pred CChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 405 KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
+.. ..+..|. ..|..++|+|++..++..+++..|++|++.+.
T Consensus 422 ~~~----------------------~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 422 KLV----------------------AELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cee----------------------eeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 421 2233343 47999999999975555555555999999875
No 62
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=1.2e-26 Score=234.29 Aligned_cols=217 Identities=17% Similarity=0.286 Sum_probs=167.4
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|....+||||+.||+|+|||+........ ....++..+.+|...|.+++|+
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~-------------~i~~p~~~L~gH~~~V~sVaf~ 134 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK-------------EIKDPQCILKGHKKKISIIDWN 134 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc-------------ccccceEEeecCCCcEEEEEEC
Confidence 467899999999999998658999999999999999975211000 0124566788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|.+...|++|+.|++|+|||+.++... ..+ .|...|.+++|+|+|. +|++++.|+.|+|||+|++. .+..+.+
T Consensus 135 P~g~~iLaSgS~DgtIrIWDl~tg~~~----~~i-~~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~-~i~tl~g 207 (568)
T PTZ00420 135 PMNYYIMCSSGFDSFVNIWDIENEKRA----FQI-NMPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQE-IASSFHI 207 (568)
T ss_pred CCCCeEEEEEeCCCeEEEEECCCCcEE----EEE-ecCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCc-EEEEEec
Confidence 998756789999999999999876432 122 2557899999999998 89999999999999999985 6677888
Q ss_pred CCCCEEEE-----EEcCCCCcEEEEEeCCC----eEEEEeCCCCCCCCceEEEeecCC--CCeEEEEEeCCCCCEEEEEe
Q 039302 323 HNADVNVI-----SWNRLASCLLASGSDDG----TFSIHDLRLLKGGDSVVAHFEYHK--HPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 323 h~~~v~~l-----~~~p~~~~~l~sgs~dg----~i~iwDlr~~~~~~~~~~~~~~h~--~~I~~v~~sp~~~~~las~s 391 (479)
|.+.+.+. .|++++ .+|++++.++ .|+|||++.... ++..+..+. +.+. ..|.+..+.+|++|+
T Consensus 208 H~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~---pl~~~~ld~~~~~L~-p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 208 HDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTS---ALVTMSIDNASAPLI-PHYDESTGLIYLIGK 282 (568)
T ss_pred ccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCC---ceEEEEecCCccceE-EeeeCCCCCEEEEEE
Confidence 98765443 345777 6777776664 799999997554 566554332 3332 345565668999999
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
.|+.|++|++..+
T Consensus 283 GD~tIr~~e~~~~ 295 (568)
T PTZ00420 283 GDGNCRYYQHSLG 295 (568)
T ss_pred CCCeEEEEEccCC
Confidence 9999999999765
No 63
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=3.7e-28 Score=220.68 Aligned_cols=254 Identities=20% Similarity=0.334 Sum_probs=211.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...+.|...|.+|...+ ..|.||+.||.++|||... +...++.||.+++.+++|.
T Consensus 99 l~~~~hdDWVSsv~~~~---~~IltgsYDg~~riWd~~G----------------------k~~~~~~Ght~~ik~v~~v 153 (423)
T KOG0313|consen 99 LQCFLHDDWVSSVKGAS---KWILTGSYDGTSRIWDLKG----------------------KSIKTIVGHTGPIKSVAWV 153 (423)
T ss_pred cccccchhhhhhhcccC---ceEEEeecCCeeEEEecCC----------------------ceEEEEecCCcceeeeEEE
Confidence 45677999999998883 5778999999999999874 7788899999999999997
Q ss_pred CCCC--CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-------
Q 039302 243 PVAP--GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG------- 313 (479)
Q Consensus 243 ~~~~--~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~------- 313 (479)
-.+. ..|++++.|.++++|..+.+.........-.||..+|.++...+++. .|++||.|.+|.||+..+.
T Consensus 154 ~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~ 232 (423)
T KOG0313|consen 154 IKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELES 232 (423)
T ss_pred ecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccc
Confidence 6554 25999999999999999876543322333459999999999999998 9999999999999993210
Q ss_pred -----------------CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 314 -----------------KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 314 -----------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
+.++..+.+|..+|.++.|++. ..+.+++.|.+|+.||+.++. .+.++.+ ..++++
T Consensus 233 ~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~----~~~~~~~-~ksl~~ 305 (423)
T KOG0313|consen 233 SSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGG----LKSTLTT-NKSLNC 305 (423)
T ss_pred cchhhhhhhhhhhcccccCceEEecccccceeeEEEcCC--CceEeecccceEEEEEeeccc----ceeeeec-CcceeE
Confidence 1367788999999999999993 689999999999999999988 5666654 678999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s 456 (479)
+..+|.. .+||+||.|..|++||.+++.. ..+.+.+..|. ..|.++.|+|...++|+|
T Consensus 306 i~~~~~~-~Ll~~gssdr~irl~DPR~~~g-------------------s~v~~s~~gH~--nwVssvkwsp~~~~~~~S 363 (423)
T KOG0313|consen 306 ISYSPLS-KLLASGSSDRHIRLWDPRTGDG-------------------SVVSQSLIGHK--NWVSSVKWSPTNEFQLVS 363 (423)
T ss_pred eeccccc-ceeeecCCCCceeecCCCCCCC-------------------ceeEEeeecch--hhhhheecCCCCceEEEE
Confidence 9999955 9999999999999999998743 33344455554 479999999999999999
Q ss_pred EcCCC-ceEEeeeccC
Q 039302 457 TAADG-FNILMPSNIQ 471 (479)
Q Consensus 457 ~~~dg-i~iw~~~~~~ 471 (479)
++.|+ +++|++++-.
T Consensus 364 ~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 364 GSYDNTVKLWDVRSTK 379 (423)
T ss_pred EecCCeEEEEEeccCC
Confidence 99999 9999998754
No 64
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=7e-27 Score=235.89 Aligned_cols=231 Identities=17% Similarity=0.290 Sum_probs=176.3
Q ss_pred EEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCC
Q 039302 187 SWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASD 266 (479)
Q Consensus 187 t~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~ 266 (479)
+|+.+|.|++|+... ..++..+.+|.+.|.+++|+|....+|+||+.||+|+|||+.+.
T Consensus 49 gGG~~gvI~L~~~~r---------------------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~ 107 (568)
T PTZ00420 49 GGGLIGAIRLENQMR---------------------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHN 107 (568)
T ss_pred CCCceeEEEeeecCC---------------------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Confidence 356778899999876 45678899999999999999984449999999999999999764
Q ss_pred Cccc----cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEE
Q 039302 267 ATWN----VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLAS 342 (479)
Q Consensus 267 ~~~~----~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 342 (479)
.... .....+.+|...|.+++|+|++..+|++++.|++|+|||++++. .+..+. |...|.+++|+|++ .+|++
T Consensus 108 ~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~-~~~~i~-~~~~V~SlswspdG-~lLat 184 (568)
T PTZ00420 108 DESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK-RAFQIN-MPKKLSSLKWNIKG-NLLSG 184 (568)
T ss_pred CccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc-EEEEEe-cCCcEEEEEECCCC-CEEEE
Confidence 3211 01224678999999999999998678899999999999999885 444454 56789999999999 89999
Q ss_pred EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEE-----EeCCCCCEEEEEeCCC----cEEEEECCCCCChHHHHHH
Q 039302 343 GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE-----WSPHEGSTLAVSSADN----QLTIWDLSLEKDEEEEAEF 413 (479)
Q Consensus 343 gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~-----~sp~~~~~las~s~Dg----~I~iwdl~~~~~~~~~~~~ 413 (479)
++.|+.|+|||+|++. .+..+.+|.+.+.+.. |++++ .+|+++|.|+ +|+|||++....
T Consensus 185 ~s~D~~IrIwD~Rsg~----~i~tl~gH~g~~~s~~v~~~~fs~d~-~~IlTtG~d~~~~R~VkLWDlr~~~~------- 252 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQE----IASSFHIHDGGKNTKNIWIDGLGGDD-NYILSTGFSKNNMREMKLWDLKNTTS------- 252 (568)
T ss_pred EecCCEEEEEECCCCc----EEEEEecccCCceeEEEEeeeEcCCC-CEEEEEEcCCCCccEEEEEECCCCCC-------
Confidence 9999999999999987 7888999988765433 34654 7788877664 799999986531
Q ss_pred hhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 414 KAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 414 ~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
|...+ .+..+..+.-..|.+....++++|+.|+ |++|.+.
T Consensus 253 --------------pl~~~-~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 253 --------------ALVTM-SIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHS 293 (568)
T ss_pred --------------ceEEE-EecCCccceEEeeeCCCCCEEEEEECCCeEEEEEcc
Confidence 22222 3332233333445555446777787777 9999874
No 65
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=4.1e-29 Score=225.56 Aligned_cols=255 Identities=18% Similarity=0.322 Sum_probs=207.6
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+|++ ..+.+|...|.|++=+|.....+|+|+.||.|+|||+.. ..++.+|..|.+.|.
T Consensus 56 kPFv-~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq---------------------R~~~~~f~AH~G~V~ 113 (433)
T KOG0268|consen 56 KPFV-GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ---------------------RECIRTFKAHEGLVR 113 (433)
T ss_pred ccch-hhccccccccchhhcCcchhhhhhccccCceEEEEehhh---------------------hhhhheeecccCcee
Confidence 6666 567999999999999998878899999999999999997 688899999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc------------------------------ccc----CCCCcccCCCcE
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT------------------------------WNV----DPNPFIGHAASV 283 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~------------------------------~~~----~~~~~~~h~~~V 283 (479)
+|++.. . .+++++.|.+|+.|.+..... |.. +...+.--...|
T Consensus 114 Gi~v~~--~-~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti 190 (433)
T KOG0268|consen 114 GICVTQ--T-SFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSI 190 (433)
T ss_pred eEEecc--c-ceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCce
Confidence 999987 3 788999999999998432100 000 111222234568
Q ss_pred EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 284 EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 284 ~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
.++.|+|...++|++|..|+.|.|||+|+.. ++..+.. ...-|.|+|+|.. ..|++|+.|..++.||+|.... +
T Consensus 191 ~svkfNpvETsILas~~sDrsIvLyD~R~~~-Pl~KVi~-~mRTN~IswnPea-fnF~~a~ED~nlY~~DmR~l~~---p 264 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCASDRSIVLYDLRQAS-PLKKVIL-TMRTNTICWNPEA-FNFVAANEDHNLYTYDMRNLSR---P 264 (433)
T ss_pred eEEecCCCcchheeeeccCCceEEEecccCC-ccceeee-eccccceecCccc-cceeeccccccceehhhhhhcc---c
Confidence 8999999999999999999999999999986 5554432 3346899999955 8999999999999999999987 9
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCee
Q 039302 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLK 442 (479)
Q Consensus 364 ~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~ 442 (479)
+..+.+|...|.+|.|+|.+ .-|++||.|.+|+||..+.+..-+. -|.- -..|.
T Consensus 265 ~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdi------------------------YhtkRMq~V~ 319 (433)
T KOG0268|consen 265 LNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDI------------------------YHTKRMQHVF 319 (433)
T ss_pred chhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhh------------------------hhHhhhheee
Confidence 99999999999999999976 9999999999999999987642211 1111 12599
Q ss_pred eEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 443 ELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 443 ~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
++.|+-+.. +++||++|+ |++|+-.-
T Consensus 320 ~Vk~S~Dsk-yi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 320 CVKYSMDSK-YIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEEEecccc-EEEecCCCcceeeeecch
Confidence 999999885 889999998 99998643
No 66
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=4.1e-27 Score=205.15 Aligned_cols=217 Identities=24% Similarity=0.428 Sum_probs=180.7
Q ss_pred CCcEEecCCCCceEEEEeCCC-CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 224 SPLVKFGGHKDEGYAIDWNPV-APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~-~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
..+.++.+|.+.++.++|+|- |. .||||+.|..|++|+...+..+......-.+|+..|++++|+|.|+ +||++|.|
T Consensus 5 ~~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD 82 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFD 82 (312)
T ss_pred eeEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeecc
Confidence 346778899999999999998 55 8999999999999999764444433333458999999999999999 99999999
Q ss_pred CcEEEEEcCCCC-ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeC
Q 039302 303 GNIAIWDTRVGK-SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 303 g~I~iwD~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp 381 (479)
.++.||.-..+. .++..+.+|...|.+++|+++| ++||+++.|..|-||.+..... ..++..+..|+..|-.+.|+|
T Consensus 83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddE-fec~aVL~~HtqDVK~V~WHP 160 (312)
T KOG0645|consen 83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDE-FECIAVLQEHTQDVKHVIWHP 160 (312)
T ss_pred ceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCc-EEEEeeeccccccccEEEEcC
Confidence 999999876553 3788889999999999999999 9999999999999999984432 457889999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCC
Q 039302 382 HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~d 460 (479)
.. .+|+++|.|++|++|.-....+ -++.....+|. .|.+++|+|.|. -|+++++|
T Consensus 161 t~-dlL~S~SYDnTIk~~~~~~ddd----------------------W~c~~tl~g~~~TVW~~~F~~~G~-rl~s~sdD 216 (312)
T KOG0645|consen 161 TE-DLLFSCSYDNTIKVYRDEDDDD----------------------WECVQTLDGHENTVWSLAFDNIGS-RLVSCSDD 216 (312)
T ss_pred Cc-ceeEEeccCCeEEEEeecCCCC----------------------eeEEEEecCccceEEEEEecCCCc-eEEEecCC
Confidence 65 8999999999999998764221 12333334443 699999999984 78889998
Q ss_pred C-ceEEeee
Q 039302 461 G-FNILMPS 468 (479)
Q Consensus 461 g-i~iw~~~ 468 (479)
+ ++||+..
T Consensus 217 ~tv~Iw~~~ 225 (312)
T KOG0645|consen 217 GTVSIWRLY 225 (312)
T ss_pred cceEeeeec
Confidence 8 9999954
No 67
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.4e-27 Score=212.03 Aligned_cols=274 Identities=19% Similarity=0.340 Sum_probs=215.6
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccc------------c-------ccCCCCCcc
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESE------------T-------VAGHGAPQV 220 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~------------~-------~~~~~~~~~ 220 (479)
....+..+|.|.||+|+|++.+ .+++|++.|++.+||...-+...+.... . ......+..
T Consensus 181 ~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ 259 (481)
T KOG0300|consen 181 ACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH 259 (481)
T ss_pred cceeeecccccceeeEEecccc-ceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc
Confidence 3446889999999999999998 8999999999999998432211111000 0 000011111
Q ss_pred ccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe
Q 039302 221 LNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS 300 (479)
Q Consensus 221 ~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s 300 (479)
.-..|+..|.+|...|.+.+|...+. ++++++.|.+..+||+.++.. ...+.||....+.++-+|+.+ ++++.+
T Consensus 260 tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRTAnlwDVEtge~----v~~LtGHd~ELtHcstHptQr-LVvTsS 333 (481)
T KOG0300|consen 260 TIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRTANLWDVETGEV----VNILTGHDSELTHCSTHPTQR-LVVTSS 333 (481)
T ss_pred eeeeeeeeeeccccceEehhhhcCcc-eeeeeeccccceeeeeccCce----eccccCcchhccccccCCcce-EEEEec
Confidence 23467889999999999999999998 999999999999999998755 467899999999999999998 999999
Q ss_pred CCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 301 VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 301 ~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
.|.+.++||+|..-..+..|.+|...|+++.|+.+. .+++|++|.+|+|||+|+... ++.+++. ..+++.++.+
T Consensus 334 rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd--~vVSgSDDrTvKvWdLrNMRs---plATIRt-dS~~NRvavs 407 (481)
T KOG0300|consen 334 RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD--RVVSGSDDRTVKVWDLRNMRS---PLATIRT-DSPANRVAVS 407 (481)
T ss_pred cCceeEeccchhhcceeeeecccccceeEEEEecCC--ceeecCCCceEEEeeeccccC---cceeeec-CCccceeEee
Confidence 999999999997655778899999999999999865 789999999999999999987 8888885 6789999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCc-EEEEEc
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPG-MIVSTA 458 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~-ll~s~~ 458 (479)
- +..+||.--.+..|++||++...-. .+|... .+||. -|++++|....+. =|.+|+
T Consensus 408 ~-g~~iIAiPhDNRqvRlfDlnG~Rla------------------RlPrts---RqgHrRMV~c~AW~eehp~cnLftcG 465 (481)
T KOG0300|consen 408 K-GHPIIAIPHDNRQVRLFDLNGNRLA------------------RLPRTS---RQGHRRMVTCCAWLEEHPACNLFTCG 465 (481)
T ss_pred c-CCceEEeccCCceEEEEecCCCccc------------------cCCccc---ccccceeeeeeeccccCccccccccc
Confidence 7 5578888888889999999876321 233222 34444 5999999876542 266777
Q ss_pred CCC-ceEEeee
Q 039302 459 ADG-FNILMPS 468 (479)
Q Consensus 459 ~dg-i~iw~~~ 468 (479)
.|. +.-|++.
T Consensus 466 FDR~v~gW~in 476 (481)
T KOG0300|consen 466 FDRMVAGWKIN 476 (481)
T ss_pred ccceeeeeEec
Confidence 776 6667653
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=3.3e-29 Score=222.95 Aligned_cols=254 Identities=22% Similarity=0.303 Sum_probs=197.7
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...++.+..+.|.+|+|++ .++++|+.||-|.+|++.+..-.. -...+..-.|.-+..+|.|+.|+
T Consensus 207 ~IKFg~KSh~EcA~FSPDg-qyLvsgSvDGFiEVWny~~GKlrK-------------DLkYQAqd~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 207 SIKFGQKSHVECARFSPDG-QYLVSGSVDGFIEVWNYTTGKLRK-------------DLKYQAQDNFMMMDDAVLCISFS 272 (508)
T ss_pred heecccccchhheeeCCCC-ceEeeccccceeeeehhccchhhh-------------hhhhhhhcceeecccceEEEeec
Confidence 4567888999999999999 799999999999999997731110 01123334455678899999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcc-cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFI-GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
.+.. .||+|+.||.|++|.+.++... +.|. .|+..|+|+.|+.++. .+++++.|.+++|.-+.+++ ++..+.
T Consensus 273 RDsE-MlAsGsqDGkIKvWri~tG~Cl----RrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHGlKSGK-~LKEfr 345 (508)
T KOG0275|consen 273 RDSE-MLASGSQDGKIKVWRIETGQCL----RRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHGLKSGK-CLKEFR 345 (508)
T ss_pred ccHH-HhhccCcCCcEEEEEEecchHH----HHhhhhhccCeeEEEEccCcc-hhhcccccceEEEeccccch-hHHHhc
Confidence 9998 9999999999999999997663 3454 8999999999999998 89999999999999999996 888999
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeCCCC---------------
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSPHEG--------------- 384 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp~~~--------------- 384 (479)
+|.+.|+...|.++| +.+++++.||+|++|+..+.. ++.+|+. ...+|+++..-|.++
T Consensus 346 GHsSyvn~a~ft~dG-~~iisaSsDgtvkvW~~Ktte----C~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 346 GHSSYVNEATFTDDG-HHIISASSDGTVKVWHGKTTE----CLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred CccccccceEEcCCC-CeEEEecCCccEEEecCcchh----hhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 999999999999999 999999999999999998876 4444432 223444444444444
Q ss_pred -----------------------------CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 385 -----------------------------STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 385 -----------------------------~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
.++.+.++|+.++.+.+.+++- ...+.+|
T Consensus 421 n~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L----------------------E~tl~Vh 478 (508)
T KOG0275|consen 421 NMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL----------------------ERTLPVH 478 (508)
T ss_pred eccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce----------------------eeeeecc
Confidence 4444445555555555444421 1344555
Q ss_pred cCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 436 QGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 436 ~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
. ..|..++-||.. .++++-++|| +++|++
T Consensus 479 E--kdvIGl~HHPHq-NllAsYsEDgllKLWkp 508 (508)
T KOG0275|consen 479 E--KDVIGLTHHPHQ-NLLASYSEDGLLKLWKP 508 (508)
T ss_pred c--ccccccccCccc-chhhhhcccchhhhcCC
Confidence 4 679999999987 5999999999 899974
No 69
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.96 E-value=1.7e-26 Score=217.86 Aligned_cols=275 Identities=20% Similarity=0.264 Sum_probs=213.1
Q ss_pred ceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 159 p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
|........|...++-++|+|.| .++|+|...|+|+|||..... .-....|+.-.++|..
T Consensus 49 ~~~~~iYtEH~~~vtVAkySPsG-~yiASGD~sG~vRIWdtt~~~-------------------hiLKnef~v~aG~I~D 108 (603)
T KOG0318|consen 49 PASVDIYTEHAHQVTVAKYSPSG-FYIASGDVSGKVRIWDTTQKE-------------------HILKNEFQVLAGPIKD 108 (603)
T ss_pred ccceeeeccccceeEEEEeCCCc-eEEeecCCcCcEEEEeccCcc-------------------eeeeeeeeeccccccc
Confidence 33445788999999999999998 799999999999999987621 1223345666789999
Q ss_pred EEeCCCCCCeEEEEeCC----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 239 IDWNPVAPGRLVSGDCN----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
|+|+.++. +|++.+.. |.+.+||..+. ...+.+|...|+++.|-|.-+..+++|++|++|.+|.-.--+
T Consensus 109 i~Wd~ds~-RI~avGEGrerfg~~F~~DSG~S------vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFK 181 (603)
T KOG0318|consen 109 ISWDFDSK-RIAAVGEGRERFGHVFLWDSGNS------VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFK 181 (603)
T ss_pred ceeCCCCc-EEEEEecCccceeEEEEecCCCc------cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCee
Confidence 99999998 66665432 46778886442 256889999999999999999999999999999999754332
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---cCCCCeEEEEEeCCCCCEEEEEe
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---YHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---~h~~~I~~v~~sp~~~~~las~s 391 (479)
-..++..|..-|+++.|+|++ .++|+.+.||.|.+||-.++. .+..+. +|++.|.+++|+|++ ..|+++|
T Consensus 182 -Fk~s~r~HskFV~~VRysPDG-~~Fat~gsDgki~iyDGktge----~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~S 254 (603)
T KOG0318|consen 182 -FKSSFREHSKFVNCVRYSPDG-SRFATAGSDGKIYIYDGKTGE----KVGELEDSDAHKGSIFALSWSPDS-TQFLTVS 254 (603)
T ss_pred -eeecccccccceeeEEECCCC-CeEEEecCCccEEEEcCCCcc----EEEEecCCCCccccEEEEEECCCC-ceEEEec
Confidence 334567899999999999998 899999999999999999988 688887 899999999999965 9999999
Q ss_pred CCCcEEEEECCCCCChHHHHHHh-------hhccc-----------c---cCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFK-------AKTRE-----------Q---VNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~-------~~~~~-----------~---~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
.|.+++|||+.......+...-. +-..+ . .......++.++..|. +.|+++..+|++
T Consensus 255 aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~ 332 (603)
T KOG0318|consen 255 ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDG 332 (603)
T ss_pred CCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCC
Confidence 99999999998764321100000 00000 0 0000112445555554 689999999999
Q ss_pred CcEEEEEcCCC-ceEEeeecc
Q 039302 451 PGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 451 ~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..|.|++.|| |+-|+....
T Consensus 333 -~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 333 -KTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred -CEEEeeccCceEEEEecCCc
Confidence 5899999999 888988665
No 70
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.96 E-value=6.4e-28 Score=225.46 Aligned_cols=207 Identities=20% Similarity=0.353 Sum_probs=177.7
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|..+|..++|+.++ .-+.|+|.|+.|++||+++ ++++..|.. ...++|+.
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~~lKlwDtET---------------------G~~~~~f~~-~~~~~cvk 306 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNNCG-TSFLSASFDRFLKLWDTET---------------------GQVLSRFHL-DKVPTCVK 306 (503)
T ss_pred eehhhhcchhhhhhhhccccC-Ceeeeeecceeeeeecccc---------------------ceEEEEEec-CCCceeee
Confidence 445788999999999999999 4556889999999999998 777777743 34789999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-----
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS----- 315 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~----- 315 (479)
|+|++.+.+++|+.|+.|+.||++++.. .+.+..|-++|++|.|-+.++ .|++.++|++++||+.+.+-.
T Consensus 307 f~pd~~n~fl~G~sd~ki~~wDiRs~kv----vqeYd~hLg~i~~i~F~~~g~-rFissSDdks~riWe~~~~v~ik~i~ 381 (503)
T KOG0282|consen 307 FHPDNQNIFLVGGSDKKIRQWDIRSGKV----VQEYDRHLGAILDITFVDEGR-RFISSSDDKSVRIWENRIPVPIKNIA 381 (503)
T ss_pred cCCCCCcEEEEecCCCcEEEEeccchHH----HHHHHhhhhheeeeEEccCCc-eEeeeccCccEEEEEcCCCccchhhc
Confidence 9999977999999999999999998754 366888999999999999999 999999999999999876410
Q ss_pred -------e---------------------------------eeEEecCC--CCEEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 039302 316 -------A---------------------------------LMSFKAHN--ADVNVISWNRLASCLLASGSDDGTFSIHD 353 (479)
Q Consensus 316 -------~---------------------------------~~~~~~h~--~~v~~l~~~p~~~~~l~sgs~dg~i~iwD 353 (479)
+ ...+.+|. +.-..+.|+|++ .+|++|+.||.+.+||
T Consensus 382 ~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 382 DPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWD 460 (503)
T ss_pred chhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEee
Confidence 0 00112222 234568899999 9999999999999999
Q ss_pred CCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 354 LRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 354 lr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.++.+ .+..+++|..+++.+.|+|...+.+|+|+.||.|++|+
T Consensus 461 wkt~k----l~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 461 WKTTK----LVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred chhhh----hhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 99988 79999999999999999999999999999999999996
No 71
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.1e-28 Score=250.19 Aligned_cols=260 Identities=21% Similarity=0.351 Sum_probs=214.0
Q ss_pred CCcceeEEEEecCCCc---EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 168 HQGCVNRIRAMSQNPH---ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~---~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
-....++++|.+.+.. +||.|.+||.|.+||........ ....+.++..|.+.|.+|+|++.
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~---------------~~~~la~~~~h~G~V~gLDfN~~ 127 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA---------------SEEVLATKSKHTGPVLGLDFNPF 127 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCc---------------chHHHhhhcccCCceeeeecccc
Confidence 3467899999998865 79999999999999987731111 24566778899999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
..+.||+|+.+|.|.|||++........ ....-.+.|.+++|+..-.++|++++.+|.+.|||+|..+ ++..+..+.
T Consensus 128 q~nlLASGa~~geI~iWDlnn~~tP~~~--~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~-pii~ls~~~ 204 (1049)
T KOG0307|consen 128 QGNLLASGADDGEILIWDLNKPETPFTP--GSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKK-PIIKLSDTP 204 (1049)
T ss_pred CCceeeccCCCCcEEEeccCCcCCCCCC--CCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCC-cccccccCC
Confidence 9889999999999999999875432211 1222457899999999888899999999999999999885 666665444
Q ss_pred --CCEEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 325 --ADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 325 --~~v~~l~~~p~~~~~l~sgs~dg---~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
..+..+.|+|+....|+++++|. .|.+||+|.... +++.+.+|...|.++.|++.+..+|++++.|++|.+|
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass---P~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~w 281 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS---PLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICW 281 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC---chhhhcccccceeeeccCCCCchhhhcccCCCCeeEe
Confidence 35789999999988888888765 699999999887 8999999999999999999998999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccCC
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQS 472 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~~ 472 (479)
+..++. .+-..-.+...+..+.|+|..|.+++..+-+| |.||.+.....
T Consensus 282 N~~tgE------------------------vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~ 331 (1049)
T KOG0307|consen 282 NPNTGE------------------------VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDT 331 (1049)
T ss_pred cCCCce------------------------EeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCc
Confidence 999873 12222223357999999999999999999999 99999887743
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-27 Score=223.19 Aligned_cols=244 Identities=22% Similarity=0.317 Sum_probs=203.0
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|..++|+|..|+=+|+.+. -.|.||+... .....++.....-+++++|..+|. +
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~---------------------~~~~k~~srFk~~v~s~~fR~DG~-L 82 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT---------------------RSVRKTFSRFKDVVYSVDFRSDGR-L 82 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEecch---------------------hhhhhhHHhhccceeEEEeecCCe-E
Confidence 4689999999998876666443 5799999887 455566666778999999999998 9
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
||.|+..|.|+|||+.+. ...+.+.+|+.+|..+.|+|.+...|++|++|+.+++||+.+.. ....+.+|...|.
T Consensus 83 laaGD~sG~V~vfD~k~r----~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~-v~~~l~~htDYVR 157 (487)
T KOG0310|consen 83 LAAGDESGHVKVFDMKSR----VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY-VQAELSGHTDYVR 157 (487)
T ss_pred EEccCCcCcEEEeccccH----HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE-EEEEecCCcceeE
Confidence 999999999999996552 12466889999999999999999899999999999999999875 4557899999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChH
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEE 408 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~ 408 (479)
|.+|+|..+.+++|||.||.|++||+|.... .+.++. |..||-+|.+-|. +.+||+++ .+.|+|||+..+...
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~---~v~eln-hg~pVe~vl~lps-gs~iasAg-Gn~vkVWDl~~G~ql- 230 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTS---RVVELN-HGCPVESVLALPS-GSLIASAG-GNSVKVWDLTTGGQL- 230 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCc---eeEEec-CCCceeeEEEcCC-CCEEEEcC-CCeEEEEEecCCcee-
Confidence 9999999888999999999999999999853 677776 8999999999994 48888876 568999999977521
Q ss_pred HHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 409 EEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
...++. +++.|+|+.+..++ .-|+|++-|+ +++|++.+.
T Consensus 231 --------------------l~~~~~--H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~ 270 (487)
T KOG0310|consen 231 --------------------LTSMFN--HNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNY 270 (487)
T ss_pred --------------------hhhhhc--ccceEEEEEeecCC-ceEeecccccceEEEEccce
Confidence 122232 35789999999987 4778888888 999996553
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.6e-27 Score=221.80 Aligned_cols=242 Identities=19% Similarity=0.293 Sum_probs=202.6
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
......|.++.|..+| .++|.|...|.|+|||+.+ ...+..+.+|+.++..+.|+|.+
T Consensus 65 srFk~~v~s~~fR~DG-~LlaaGD~sG~V~vfD~k~---------------------r~iLR~~~ah~apv~~~~f~~~d 122 (487)
T KOG0310|consen 65 SRFKDVVYSVDFRSDG-RLLAAGDESGHVKVFDMKS---------------------RVILRQLYAHQAPVHVTKFSPQD 122 (487)
T ss_pred HhhccceeEEEeecCC-eEEEccCCcCcEEEecccc---------------------HHHHHHHhhccCceeEEEecccC
Confidence 3456789999999999 8999999999999999665 45567889999999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
...|++|+.|+.+++||+.+... ...+.+|+..|.|.+|+|...++++|||.||+|++||+|.....+.. ..|..
T Consensus 123 ~t~l~s~sDd~v~k~~d~s~a~v----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~e-lnhg~ 197 (487)
T KOG0310|consen 123 NTMLVSGSDDKVVKYWDLSTAYV----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVE-LNHGC 197 (487)
T ss_pred CeEEEecCCCceEEEEEcCCcEE----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEE-ecCCC
Confidence 87899999999999999987542 35688999999999999999989999999999999999998534444 45899
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+|.++.+-|.| .+||+++. ..|+|||+-++.. .+..+..|...|||+.+..++ ..|++||-|+.|++||+...
T Consensus 198 pVe~vl~lpsg-s~iasAgG-n~vkVWDl~~G~q---ll~~~~~H~KtVTcL~l~s~~-~rLlS~sLD~~VKVfd~t~~- 270 (487)
T KOG0310|consen 198 PVESVLALPSG-SLIASAGG-NSVKVWDLTTGGQ---LLTSMFNHNKTVTCLRLASDS-TRLLSGSLDRHVKVFDTTNY- 270 (487)
T ss_pred ceeeEEEcCCC-CEEEEcCC-CeEEEEEecCCce---ehhhhhcccceEEEEEeecCC-ceEeecccccceEEEEccce-
Confidence 99999999998 78888775 5899999997764 566666699999999999854 99999999999999997765
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
++++.-.-..+|.+++.+|++. .++.|..+|+-..+
T Consensus 271 ------------------------Kvv~s~~~~~pvLsiavs~dd~-t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 271 ------------------------KVVHSWKYPGPVLSIAVSPDDQ-TVVIGMSNGLVSIR 306 (487)
T ss_pred ------------------------EEEEeeecccceeeEEecCCCc-eEEEecccceeeee
Confidence 3444444445899999999875 66666667644444
No 74
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=1.6e-26 Score=232.47 Aligned_cols=304 Identities=23% Similarity=0.286 Sum_probs=234.6
Q ss_pred eeChhHHHhhhcccccCceeeE---EEeeC-CCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCC
Q 039302 55 QCDPTAYNSLHAFHIGWPCLSF---DILRD-TLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKP 130 (479)
Q Consensus 55 ~~d~~~Y~~~~~~~~~wP~ls~---~~~~d-~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~ 130 (479)
.+-+++|...+.....|-.+.+ ..+.. .....-..+.+..++++| ..+..|++|+.-+
T Consensus 176 ~~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~-----s~~~tl~~~~~~~------------- 237 (537)
T KOG0274|consen 176 RPWKSFYRRRFRLSKNWRKLFRRGYKVLLGTDDHVVLCLQLHDGFFKSG-----SDDSTLHLWDLNN------------- 237 (537)
T ss_pred chhhhhhhhhhhccccccccccccceeecccCcchhhhheeecCeEEec-----CCCceeEEeeccc-------------
Confidence 4456788888887776643322 22211 111111223344566665 4677888886621
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccc
Q 039302 131 ATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESE 210 (479)
Q Consensus 131 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~ 210 (479)
.-.+...+.+|.+.|.++.+.. +..++++|+.|.+++|||+.+
T Consensus 238 ---------------------------~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s--------- 280 (537)
T KOG0274|consen 238 ---------------------------GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST--------- 280 (537)
T ss_pred ---------------------------ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC---------
Confidence 2233344999999999999987 447999999999999999887
Q ss_pred cccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC
Q 039302 211 TVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP 290 (479)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 290 (479)
+.+..++.+|...|.++...+ ..+++|+.|.+|++|++.++... ..+.+|.++|+++..+
T Consensus 281 ------------g~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l----~l~~~h~~~V~~v~~~- 340 (537)
T KOG0274|consen 281 ------------GECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACL----NLLRGHTGPVNCVQLD- 340 (537)
T ss_pred ------------CcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceE----EEeccccccEEEEEec-
Confidence 899999999999999998876 37889999999999999876552 4466699999999998
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC-CCCCceEEEeec
Q 039302 291 TESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL-KGGDSVVAHFEY 369 (479)
Q Consensus 291 ~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~-~~~~~~~~~~~~ 369 (479)
+. ++++|+.||+|++||+++.+ ++.++.+|...|.++.+... ..+++|+.|++|++||+++. + ++.++.+
T Consensus 341 -~~-~lvsgs~d~~v~VW~~~~~~-cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~~----c~~tl~~ 411 (537)
T KOG0274|consen 341 -EP-LLVSGSYDGTVKVWDPRTGK-CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKRK----CIHTLQG 411 (537)
T ss_pred -CC-EEEEEecCceEEEEEhhhce-eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchhh----hhhhhcC
Confidence 55 99999999999999999885 89999999999999988875 68999999999999999999 6 8999999
Q ss_pred CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCC
Q 039302 370 HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQ 449 (479)
Q Consensus 370 h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~ 449 (479)
|..-+.++.+.. .+|++++.|++|++||....... +.+..+ .+..|..+++.
T Consensus 412 h~~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~~~~----------------------~~~~~~-~~~~v~~l~~~-- 463 (537)
T KOG0274|consen 412 HTSLVSSLLLRD---NFLVSSSADGTIKLWDAEEGECL----------------------RTLEGR-HVGGVSALALG-- 463 (537)
T ss_pred Cccccccccccc---ceeEeccccccEEEeecccCcee----------------------eeeccC-CcccEEEeecC--
Confidence 999998888753 88999999999999999887531 222221 22568888876
Q ss_pred CCcEEEEEcCCCceEEeeecc
Q 039302 450 VPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 450 ~~~ll~s~~~dgi~iw~~~~~ 470 (479)
.+.+|+++.++.+++|++.+.
T Consensus 464 ~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 464 KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred cceEEEEecCCeeEEEecccC
Confidence 233455555444999999877
No 75
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.6e-27 Score=217.69 Aligned_cols=290 Identities=18% Similarity=0.244 Sum_probs=220.7
Q ss_pred eeeeChhHHH--hhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCC
Q 039302 53 ELQCDPTAYN--SLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKP 130 (479)
Q Consensus 53 ~l~~d~~~Y~--~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~ 130 (479)
.-+|++..=+ ..|-+-+.-+.|++.|+--....... -.|+.+||. +-.|.||++--......-
T Consensus 154 vYVyn~~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~----gNyvAiGtm-----dp~IeIWDLDI~d~v~P~------ 218 (463)
T KOG0270|consen 154 VYVYNEEEENLYVHHDFILPAFPLCIEWLDHGSKSGGA----GNYVAIGTM-----DPEIEIWDLDIVDAVLPC------ 218 (463)
T ss_pred EEEEcCCCcceeEecceeccCcchhhhhhhcCCCCCCC----cceEEEecc-----CceeEEeccccccccccc------
Confidence 3444443323 34555667777899999763332221 358999984 448999988321110000
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCCCC-------CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc
Q 039302 131 ATGDEDADGESSDSDDDSDDEEEGGSG-------TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHL 203 (479)
Q Consensus 131 ~~~~~~~~~~~~~~~~d~~~~~~~~~~-------~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~ 203 (479)
-..|.+ +........+|+..|-.+.|+..-.++||+||.|.+|.+||+..
T Consensus 219 ---------------------~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~-- 275 (463)
T KOG0270|consen 219 ---------------------VTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT-- 275 (463)
T ss_pred ---------------------eeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC--
Confidence 000000 00111224579999999999999999999999999999999998
Q ss_pred ccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcE
Q 039302 204 NALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASV 283 (479)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V 283 (479)
++|..++..|+++|.+++|+|..+..|++|+.|++|.+.|.+..... ...-.-.+.|
T Consensus 276 -------------------g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s----~~~wk~~g~V 332 (463)
T KOG0270|consen 276 -------------------GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS----GKEWKFDGEV 332 (463)
T ss_pred -------------------CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc----CceEEeccce
Confidence 88999999999999999999999889999999999999999853221 1122236789
Q ss_pred EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 284 EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 284 ~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
..++|.|...+.|+++..||+|+-+|+|....++.++.+|...|.+|++++..+.+++|++.|+.|++|++.........
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~ 412 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVK 412 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccc
Confidence 99999999998999999999999999999978999999999999999999999999999999999999999766531111
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 364 ~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+.+. -+...|.++.|+...+||.||..+.++|||+.+..
T Consensus 413 ~~~~~--~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 413 EHSFK--LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ccccc--ccceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 22222 23467888999888899999999999999998764
No 76
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=4.7e-26 Score=222.88 Aligned_cols=329 Identities=17% Similarity=0.218 Sum_probs=240.6
Q ss_pred hHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCC
Q 039302 59 TAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDAD 138 (479)
Q Consensus 59 ~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~ 138 (479)
..|.-+-.+.+..---+|+|.|+.... ..++. -.+|.|..|.+++ ..... +
T Consensus 309 ~~i~r~~~ir~~~kiks~dv~~~~~~~--------~~lv~------l~nNtv~~ysl~~-s~~~~-p------------- 359 (888)
T KOG0306|consen 309 DEIKRLETIRTSAKIKSFDVTPSGGTE--------NTLVL------LANNTVEWYSLEN-SGKTS-P------------- 359 (888)
T ss_pred HHHHHHHheechhheeEEEEEecCCcc--------eeEEE------eecCceEEEEecc-CCCCC-c-------------
Confidence 345555556666666799999985432 12333 1468899999965 11110 0
Q ss_pred CCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCccc--ccccccccC--
Q 039302 139 GESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNA--LAESETVAG-- 214 (479)
Q Consensus 139 ~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~--~~~~~~~~~-- 214 (479)
.....-.+.+.+|...|.+++++.+. .++++ +..+.++||+..+...- +...-....
T Consensus 360 -----------------~~~~~~~i~~~GHR~dVRsl~vS~d~-~~~~S-ga~~SikiWn~~t~kciRTi~~~y~l~~~F 420 (888)
T KOG0306|consen 360 -----------------EADRTSNIEIGGHRSDVRSLCVSSDS-ILLAS-GAGESIKIWNRDTLKCIRTITCGYILASKF 420 (888)
T ss_pred -----------------cccccceeeeccchhheeEEEeecCc-eeeee-cCCCcEEEEEccCcceeEEeccccEEEEEe
Confidence 00223335678999999999999987 67777 45578999998853211 000000000
Q ss_pred -CCCCc--------------cccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc--------ccc
Q 039302 215 -HGAPQ--------------VLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT--------WNV 271 (479)
Q Consensus 215 -~~~~~--------------~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~--------~~~ 271 (479)
.+... ......+.+...|.+.++.++.+|++. .+++|+.|.+|++|+..-... ..+
T Consensus 421 vpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 421 VPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred cCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 00000 012234455678999999999999998 899999999999999742111 011
Q ss_pred CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEE
Q 039302 272 DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSI 351 (479)
Q Consensus 272 ~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~i 351 (479)
.......-...|.|+.+||+++ ++|++--|.+++||-+.+.+ -..++.+|.-+|.||..+|++ .+++|||.|..|+|
T Consensus 500 ~~~rtLel~ddvL~v~~Spdgk-~LaVsLLdnTVkVyflDtlK-FflsLYGHkLPV~smDIS~DS-klivTgSADKnVKi 576 (888)
T KOG0306|consen 500 KHTRTLELEDDVLCVSVSPDGK-LLAVSLLDNTVKVYFLDTLK-FFLSLYGHKLPVLSMDISPDS-KLIVTGSADKNVKI 576 (888)
T ss_pred ccceEEeccccEEEEEEcCCCc-EEEEEeccCeEEEEEeccee-eeeeecccccceeEEeccCCc-CeEEeccCCCceEE
Confidence 1112223457899999999999 99999999999999999986 677889999999999999999 99999999999999
Q ss_pred EeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCce
Q 039302 352 HDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQL 431 (479)
Q Consensus 352 wDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 431 (479)
|-+.-+. +-..|-+|...|.+|.|.|.. .+|.++|.|+.|+-||-...... +.
T Consensus 577 WGLdFGD----CHKS~fAHdDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe~i----------------------q~ 629 (888)
T KOG0306|consen 577 WGLDFGD----CHKSFFAHDDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFEEI----------------------QK 629 (888)
T ss_pred eccccch----hhhhhhcccCceeEEEEcccc-eeEEEecCcceEEeechhhhhhh----------------------ee
Confidence 9999988 788999999999999999955 99999999999999998766421 33
Q ss_pred EEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 432 LFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 432 ~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+..| +..|++++..|+|. +++|++.|. |++|....
T Consensus 630 L~~H--~~ev~cLav~~~G~-~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 630 LDGH--HSEVWCLAVSPNGS-FVVSSSHDKSIRLWERTD 665 (888)
T ss_pred eccc--hheeeeeEEcCCCC-eEEeccCCceeEeeeccC
Confidence 4444 46899999999996 777777766 99997655
No 77
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=9.5e-26 Score=191.64 Aligned_cols=254 Identities=21% Similarity=0.290 Sum_probs=197.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.+...|++.|.|.+|+|.| .+||||+.|.+|++.-++...... ..+-..|.-|.+.|..|+|.
T Consensus 83 kr~khhkgsiyc~~ws~~g-eliatgsndk~ik~l~fn~dt~~~----------------~g~dle~nmhdgtirdl~fl 145 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCG-ELIATGSNDKTIKVLPFNADTCNA----------------TGHDLEFNMHDGTIRDLAFL 145 (350)
T ss_pred eeccccCccEEEEEecCcc-CeEEecCCCceEEEEecccccccc----------------cCcceeeeecCCceeeeEEe
Confidence 3456789999999999999 899999999999998887643322 33456678899999999997
Q ss_pred CCCC--C-eEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 243 PVAP--G-RLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 243 ~~~~--~-~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
.+.. + +|++++ .|..|++-|..+++. ...+.+|++-|.++- +-++. .|++|+.|.+|++||+|-.. ++.
T Consensus 146 d~~~s~~~il~s~gagdc~iy~tdc~~g~~----~~a~sghtghilaly-swn~~-m~~sgsqdktirfwdlrv~~-~v~ 218 (350)
T KOG0641|consen 146 DDPESGGAILASAGAGDCKIYITDCGRGQG----FHALSGHTGHILALY-SWNGA-MFASGSQDKTIRFWDLRVNS-CVN 218 (350)
T ss_pred cCCCcCceEEEecCCCcceEEEeecCCCCc----ceeecCCcccEEEEE-EecCc-EEEccCCCceEEEEeeeccc-eee
Confidence 5432 2 666654 466788878776554 356889999988763 33466 99999999999999999874 555
Q ss_pred EEe--cC-----CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 319 SFK--AH-----NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 319 ~~~--~h-----~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
.+. .| .+.|.+++..|.+ .+|++|-.|....+||+|.+. ++..|..|+..|.+|.|+| +..+|++++
T Consensus 219 ~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r----~iq~f~phsadir~vrfsp-~a~yllt~s 292 (350)
T KOG0641|consen 219 TLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGR----MIQRFHPHSADIRCVRFSP-GAHYLLTCS 292 (350)
T ss_pred eccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCc----eeeeeCCCccceeEEEeCC-CceEEEEec
Confidence 542 22 2568999999999 999999999999999999988 8999999999999999999 669999999
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
.|..|++-|+...-. ..+|.-++-.|. ..+..+.|||+.- -++|++.|. ..+|-+
T Consensus 293 yd~~ikltdlqgdla------------------~el~~~vv~ehk--dk~i~~rwh~~d~-sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 293 YDMKIKLTDLQGDLA------------------HELPIMVVAEHK--DKAIQCRWHPQDF-SFISSSADKTATLWAL 348 (350)
T ss_pred ccceEEEeecccchh------------------hcCceEEEEecc--CceEEEEecCccc-eeeeccCcceEEEecc
Confidence 999999999875421 133333333343 5688899999984 455555555 888865
No 78
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.8e-27 Score=217.56 Aligned_cols=266 Identities=18% Similarity=0.291 Sum_probs=206.7
Q ss_pred eEEEEecCC------CcEEEEEeCCceEEEEeCCCCcccccccccccCCCC-CccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 173 NRIRAMSQN------PHICASWADTGHVQVWDFRSHLNALAESETVAGHGA-PQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 173 ~~v~~~p~~------~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.|+.|...+ .+++|.|+.+..|.|||+.-......... ...... .+...++.-....+|+..|.+|+|+..-
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~-LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~ 255 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVT-LGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNF 255 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccccccee-echhhhhhhhhhcccccccccchHHHHHHHhcccc
Confidence 455554431 47999999999999999875322211110 000000 0001122223345799999999999998
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.+.||||+.|.+|++||+.+++. ...+..|.+.|.+++|+|....++++||.|++|.+.|.|.....-..+. ..+
T Consensus 256 ~nVLaSgsaD~TV~lWD~~~g~p----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk-~~g 330 (463)
T KOG0270|consen 256 RNVLASGSADKTVKLWDVDTGKP----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK-FDG 330 (463)
T ss_pred ceeEEecCCCceEEEEEcCCCCc----ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE-ecc
Confidence 88999999999999999998765 3456679999999999999999999999999999999997542222232 457
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.|-.+.|+|.....++++.+||+|+-+|+|+... ++.++.+|.++|.+|++++..+++|+++|.|+.|++|++....
T Consensus 331 ~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~---~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 331 EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGK---PVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred ceEEEEecCCCceeEEEecCCceEEeeecCCCCC---ceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 8999999999999999999999999999999865 9999999999999999999999999999999999999998653
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
. .....|.-. ....++++.|..+.+++.+|..+ ++||++.+.
T Consensus 408 ~-----------------------~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 408 P-----------------------KSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred C-----------------------cccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 1 223333211 13678899999999999999988 899988664
No 79
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=2.1e-27 Score=217.87 Aligned_cols=282 Identities=21% Similarity=0.294 Sum_probs=216.1
Q ss_pred ccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039302 69 IGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDS 148 (479)
Q Consensus 69 ~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (479)
.+|-+-.+.|+++.. .|. .++.+..|.+|++. ..
T Consensus 174 h~gev~~v~~l~~sd-----------tla-----tgg~Dr~Ik~W~v~-~~----------------------------- 207 (459)
T KOG0288|consen 174 HEGEVHDVEFLRNSD-----------TLA-----TGGSDRIIKLWNVL-GE----------------------------- 207 (459)
T ss_pred cccccceeEEccCcc-----------hhh-----hcchhhhhhhhhcc-cc-----------------------------
Confidence 478888888888721 233 34678889999883 11
Q ss_pred ccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE
Q 039302 149 DDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK 228 (479)
Q Consensus 149 ~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479)
+-.+...+.+-.+.|+++.|.+++.++||. +.|+.+++|++.. .+...+
T Consensus 208 ---------k~~~~~tLaGs~g~it~~d~d~~~~~~iAa-s~d~~~r~Wnvd~---------------------~r~~~T 256 (459)
T KOG0288|consen 208 ---------KSELISTLAGSLGNITSIDFDSDNKHVIAA-SNDKNLRLWNVDS---------------------LRLRHT 256 (459)
T ss_pred ---------hhhhhhhhhccCCCcceeeecCCCceEEee-cCCCceeeeeccc---------------------hhhhhh
Confidence 112334566777899999999999666654 9999999999998 678889
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 229 FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
+.||++.|+++.|..... .+++|+.|.+|++||+....... ..+. .+.+++|..+ .. .+++|-.|++|++|
T Consensus 257 LsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~k---t~l~--~S~cnDI~~~--~~-~~~SgH~DkkvRfw 327 (459)
T KOG0288|consen 257 LSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSK---TVLP--GSQCNDIVCS--IS-DVISGHFDKKVRFW 327 (459)
T ss_pred hcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheec---cccc--cccccceEec--ce-eeeecccccceEEE
Confidence 999999999999998876 79999999999999998743321 2232 3567778776 22 79999999999999
Q ss_pred EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC----CCCeEEEEEeCCCC
Q 039302 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH----KHPVTSIEWSPHEG 384 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h----~~~I~~v~~sp~~~ 384 (479)
|+|+.. +......+. .|+++..++++ ..|++++.|.++.+.|+|+.. ....+.+. ....+.+.|||++
T Consensus 328 D~Rs~~-~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlRt~e----I~~~~sA~g~k~asDwtrvvfSpd~- 399 (459)
T KOG0288|consen 328 DIRSAD-KTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLRTKE----IRQTFSAEGFKCASDWTRVVFSPDG- 399 (459)
T ss_pred eccCCc-eeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeeccccc----EEEEeeccccccccccceeEECCCC-
Confidence 999986 667777665 89999999999 788888999999999999987 56666542 2348899999955
Q ss_pred CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceE
Q 039302 385 STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNI 464 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~i 464 (479)
.++|+||.||.|+||++.+++.+ ..+.....+..|++++|+|.|.+++++.-+..+.+
T Consensus 400 ~YvaAGS~dgsv~iW~v~tgKlE----------------------~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~l 457 (459)
T KOG0288|consen 400 SYVAAGSADGSVYIWSVFTGKLE----------------------KVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTL 457 (459)
T ss_pred ceeeeccCCCcEEEEEccCceEE----------------------EEeccCCCCcceEEEEEcCCCchhhcccCCcceEe
Confidence 99999999999999999998632 11111111225999999999976655544443788
Q ss_pred Ee
Q 039302 465 LM 466 (479)
Q Consensus 465 w~ 466 (479)
|.
T Consensus 458 W~ 459 (459)
T KOG0288|consen 458 WT 459 (459)
T ss_pred cC
Confidence 74
No 80
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=3.6e-26 Score=210.95 Aligned_cols=241 Identities=19% Similarity=0.324 Sum_probs=200.9
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
-.+.++...|.. ..++||+.|..+.++|... .+.+.+|.||...|..+.++++.. .+
T Consensus 220 pgi~ald~~~s~-~~ilTGG~d~~av~~d~~s---------------------~q~l~~~~Gh~kki~~v~~~~~~~-~v 276 (506)
T KOG0289|consen 220 PGITALDIIPSS-SKILTGGEDKTAVLFDKPS---------------------NQILATLKGHTKKITSVKFHKDLD-TV 276 (506)
T ss_pred CCeeEEeecCCC-CcceecCCCCceEEEecch---------------------hhhhhhccCcceEEEEEEeccchh-he
Confidence 468888888873 6788999999999999987 678899999999999999999998 99
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe--cCCCCE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK--AHNADV 327 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~--~h~~~v 327 (479)
++++.|..|+||....... ......|..+|+.+..+|+|. +|++++.||++.+.|++++.. +.... ...-.+
T Consensus 277 ~~aSad~~i~vws~~~~s~----~~~~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~-lt~vs~~~s~v~~ 350 (506)
T KOG0289|consen 277 ITASADEIIRVWSVPLSSE----PTSSRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQ-LTVVSDETSDVEY 350 (506)
T ss_pred eecCCcceEEeeccccccC----ccccccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcE-EEEEeecccccee
Confidence 9999999999999866543 355778999999999999999 999999999999999999863 33332 233568
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
++.+|+|+| .+|++|..||.|+|||+.+.. .+..|.+|+++|..|+|+.++ ++|++++.|+.|++|||+..+..
T Consensus 351 ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~----~~a~Fpght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 351 TSAAFHPDG-LIFGTGTPDGVVKIWDLKSQT----NVAKFPGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred EEeeEcCCc-eEEeccCCCceEEEEEcCCcc----ccccCCCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhccc
Confidence 999999999 999999999999999999988 689999999999999999955 99999999999999999987521
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
+.+.... ...|.++.|.+.|.+|+++ +.+ +.||.....
T Consensus 425 ----------------------kt~~l~~-~~~v~s~~fD~SGt~L~~~-g~~-l~Vy~~~k~ 462 (506)
T KOG0289|consen 425 ----------------------KTIQLDE-KKEVNSLSFDQSGTYLGIA-GSD-LQVYICKKK 462 (506)
T ss_pred ----------------------ceeeccc-cccceeEEEcCCCCeEEee-cce-eEEEEEecc
Confidence 1222222 2379999999999755554 333 566666533
No 81
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.7e-26 Score=193.38 Aligned_cols=249 Identities=20% Similarity=0.223 Sum_probs=200.4
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
...+.....+|-.+|..++.+.++ .-+|+|+.|..|.+||+++ ++.+..|.+|.+.|+
T Consensus 48 rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vwDV~T---------------------Gkv~Rr~rgH~aqVN 105 (307)
T KOG0316|consen 48 RGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVWDVNT---------------------GKVDRRFRGHLAQVN 105 (307)
T ss_pred ccceeeeecCCCceeeeccccccc-cccccCCCCceEEEEEccc---------------------Ceeeeecccccceee
Confidence 345667888999999999999998 5778889999999999998 888999999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++|+.... .+++|+.|.++++||.+...... .+.+......|.+|..+. +.+++||.||+++.||+|.+. ..
T Consensus 106 tV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~eP--iQildea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~-l~ 178 (307)
T KOG0316|consen 106 TVRFNEESS-VVASGSFDSSVRLWDCRSRSFEP--IQILDEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGT-LS 178 (307)
T ss_pred EEEecCcce-EEEeccccceeEEEEcccCCCCc--cchhhhhcCceeEEEecc---cEEEeeccCCcEEEEEeecce-ee
Confidence 999999987 99999999999999998755433 355666778899999863 379999999999999999985 32
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE--EEEEeCCCCCEEEEEeCCCc
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT--SIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~--~v~~sp~~~~~las~s~Dg~ 395 (479)
. .-...+|++++|++++ +..++++.|+++++.|-.+++ .+..+++|...=. ..+++..+ ..+++||+||.
T Consensus 179 s--Dy~g~pit~vs~s~d~-nc~La~~l~stlrLlDk~tGk----lL~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~ 250 (307)
T KOG0316|consen 179 S--DYFGHPITSVSFSKDG-NCSLASSLDSTLRLLDKETGK----LLKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGK 250 (307)
T ss_pred h--hhcCCcceeEEecCCC-CEEEEeeccceeeecccchhH----HHHHhcccccceeeeeeeecccc-eeEEeccCCce
Confidence 2 3345689999999999 888889999999999999988 8999999987544 34555533 88999999999
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
|++|||-.... -..+.+.+.-.|.++.+||..+.++++++ .+...|.-
T Consensus 251 Vy~wdLvd~~~-----------------------~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 251 VYFWDLVDETQ-----------------------ISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFWYQ 298 (307)
T ss_pred EEEEEecccee-----------------------eeeeccCCceeEEeeecccCccceeEecC-Cceeceee
Confidence 99999987631 11222222223899999999875555544 44566653
No 82
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.8e-26 Score=199.84 Aligned_cols=276 Identities=20% Similarity=0.339 Sum_probs=209.1
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+|..-|+++.|.+.| +.+|||+.|++|+|||...... +..+....+.|.+.|..+.|.+-.
T Consensus 10 s~h~DlihdVs~D~~G-RRmAtCSsDq~vkI~d~~~~s~-----------------~W~~Ts~Wrah~~Si~rV~WAhPE 71 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYG-RRMATCSSDQTVKIWDSTSDSG-----------------TWSCTSSWRAHDGSIWRVVWAHPE 71 (361)
T ss_pred cCCcceeeeeeecccC-ceeeeccCCCcEEEEeccCCCC-----------------ceEEeeeEEecCCcEEEEEecCcc
Confidence 4788999999999999 7888999999999999865211 345667788999999999998754
Q ss_pred CC-eEEEEeCCCeEEEEecCCC------CccccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCc--
Q 039302 246 PG-RLVSGDCNSCIHLWEPASD------ATWNVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGKS-- 315 (479)
Q Consensus 246 ~~-~l~sg~~dg~I~lwd~~~~------~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~~-- 315 (479)
-| .+|+++.|+++.||.-... ..|.. ...+....+.|++|+|.|... -.+|+++.||.||||+.-..-.
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~-~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs 150 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVR-RTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLS 150 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEE-EEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccc
Confidence 33 8999999999999975321 12222 234566778999999999753 3689999999999998765421
Q ss_pred ---eee-------EEecCCCCEEEEEEcCCC--CcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 316 ---ALM-------SFKAHNADVNVISWNRLA--SCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 316 ---~~~-------~~~~h~~~v~~l~~~p~~--~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
... ....+.....|++|+|.. ..+||.|+++ +.++||...........+.++..|+.+|++|+
T Consensus 151 ~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~ 230 (361)
T KOG2445|consen 151 QWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDIS 230 (361)
T ss_pred cchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeee
Confidence 111 112466778999999753 4689998887 57899987655433456778889999999999
Q ss_pred EeCCCC---CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEE
Q 039302 379 WSPHEG---STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMI 454 (479)
Q Consensus 379 ~sp~~~---~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll 454 (479)
|.|+-+ .+||+++.|| |+||.+.......++.+ ........+++.+++..+.+|. .|..+.|+-.| .+|
T Consensus 231 wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee-----~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiL 303 (361)
T KOG2445|consen 231 WAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEE-----VLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TIL 303 (361)
T ss_pred eccccCCceeeEEEeecCc-EEEEEEeeccchhhhhc-----ccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEE
Confidence 999754 4799999999 99999986543222111 1122334467778888788777 79999999998 499
Q ss_pred EEEcCCC-ceEEee
Q 039302 455 VSTAADG-FNILMP 467 (479)
Q Consensus 455 ~s~~~dg-i~iw~~ 467 (479)
+|+|+|| |++|+.
T Consensus 304 sStGdDG~VRLWka 317 (361)
T KOG2445|consen 304 SSTGDDGCVRLWKA 317 (361)
T ss_pred eecCCCceeeehhh
Confidence 9999999 999975
No 83
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.95 E-value=5.7e-26 Score=197.61 Aligned_cols=239 Identities=15% Similarity=0.262 Sum_probs=205.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|..+++.|+++.+| .||.+|+.|.++.||---. ++.+-++.||++.|+|++..-
T Consensus 5 ~l~GHERplTqiKyN~eG-DLlFscaKD~~~~vw~s~n---------------------GerlGty~GHtGavW~~Did~ 62 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREG-DLLFSCAKDSTPTVWYSLN---------------------GERLGTYDGHTGAVWCCDIDW 62 (327)
T ss_pred ccccCccccceEEecCCC-cEEEEecCCCCceEEEecC---------------------CceeeeecCCCceEEEEEecC
Confidence 477999999999999999 7999999999999998755 788899999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-----CCcEEEEEcCCC-----
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-----DGNIAIWDTRVG----- 313 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-----dg~I~iwD~~~~----- 313 (479)
+.. .|++|+.|.+++|||+.+++... ...-..+|..+.|++.+. +++.+.. .+.|.++|++..
T Consensus 63 ~s~-~liTGSAD~t~kLWDv~tGk~la-----~~k~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 63 DSK-HLITGSADQTAKLWDVETGKQLA-----TWKTNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred Ccc-eeeeccccceeEEEEcCCCcEEE-----EeecCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChhhhc
Confidence 988 99999999999999999976632 222357899999999998 6655543 467999999943
Q ss_pred -CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 314 -KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 314 -~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
+.|...+..+...++++-|.|.+ .+|++|..||.|.+||++++.. .+...+.|...|+.++++|+. .+|+++|.
T Consensus 136 s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~ 210 (327)
T KOG0643|consen 136 SEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDR-TYFITGSK 210 (327)
T ss_pred ccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCce---eeechhhhccccccccccCCc-ceEEeccc
Confidence 23677888888999999999999 8999999999999999999875 777778899999999999965 99999999
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
|.+-++||+.+. +++....-..+|++.+++|....++..++.+-
T Consensus 211 Dttakl~D~~tl-------------------------~v~Kty~te~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 211 DTTAKLVDVRTL-------------------------EVLKTYTTERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred Cccceeeeccce-------------------------eeEEEeeecccccceecccccceEEecCCcee
Confidence 999999999887 34444444468999999998887887777764
No 84
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.4e-25 Score=193.18 Aligned_cols=273 Identities=19% Similarity=0.261 Sum_probs=218.3
Q ss_pred CceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 039302 71 WPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDD 150 (479)
Q Consensus 71 wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (479)
-++.|+-|--+.. +++.| +.+..+.||.+..+.
T Consensus 21 ~~v~Sv~wn~~g~-----------~lasg-----s~dktv~v~n~e~~r------------------------------- 53 (313)
T KOG1407|consen 21 QKVHSVAWNCDGT-----------KLASG-----SFDKTVSVWNLERDR------------------------------- 53 (313)
T ss_pred hcceEEEEcccCc-----------eeeec-----ccCCceEEEEecchh-------------------------------
Confidence 3567788877743 46665 467789999884321
Q ss_pred ccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec
Q 039302 151 EEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG 230 (479)
Q Consensus 151 ~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (479)
........+|.+.|-.++|.|..+.++++++.|.+|++||+.. .++.....
T Consensus 54 --------~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~---------------------~k~~~~i~ 104 (313)
T KOG1407|consen 54 --------FRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS---------------------GKCTARIE 104 (313)
T ss_pred --------hhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc---------------------CcEEEEee
Confidence 1122356789999999999999999999999999999999997 67777765
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
... +-.-+.|+|++. +++.++.|..|.+.|.++..... -......++.++|+.++. +|+.....|+|.|...
T Consensus 105 ~~~-eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~-----~~~~~~e~ne~~w~~~nd-~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 105 TKG-ENINITWSPDGE-YIAVGNKDDRITFIDARTYKIVN-----EEQFKFEVNEISWNNSND-LFFLTNGLGCVEILSY 176 (313)
T ss_pred ccC-cceEEEEcCCCC-EEEEecCcccEEEEEecccceee-----hhcccceeeeeeecCCCC-EEEEecCCceEEEEec
Confidence 444 445688999998 99999999999999998754422 112345688899996665 7777677899999999
Q ss_pred CCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 311 RVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
...+ ++.++++|.....||.|+|+| .+||+|+.|..+.+||+...- +++.+.-+.-||..++|+.+ +.+||+|
T Consensus 177 psLk-pv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ELi----C~R~isRldwpVRTlSFS~d-g~~lASa 249 (313)
T KOG1407|consen 177 PSLK-PVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVDELI----CERCISRLDWPVRTLSFSHD-GRMLASA 249 (313)
T ss_pred cccc-cccccccCCcceEEEEECCCC-ceEeeccccceeeccChhHhh----hheeeccccCceEEEEeccC-cceeecc
Confidence 8775 899999999999999999999 999999999999999999887 78999999999999999985 5999999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
|+|..|-|=++.++. ++-.+ ....+-..|+|||..+.|..++++
T Consensus 250 SEDh~IDIA~vetGd------------------------~~~eI-~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGD------------------------RVWEI-PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred CccceEEeEecccCC------------------------eEEEe-eccCCceeEEecCCCceeeEEecC
Confidence 999999998888874 22222 223578899999999744444443
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.6e-25 Score=197.84 Aligned_cols=234 Identities=23% Similarity=0.357 Sum_probs=181.1
Q ss_pred CceeE--EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc
Q 039302 158 TPILQ--LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE 235 (479)
Q Consensus 158 ~p~~~--~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 235 (479)
+|.+. +....|.+.|++++.+. .++|+||.|-+|+|||+.. ...+..+-.|.+.
T Consensus 30 ~~~l~~lF~~~aH~~sitavAVs~---~~~aSGssDetI~IYDm~k---------------------~~qlg~ll~Hags 85 (362)
T KOG0294|consen 30 KPTLKPLFAFSAHAGSITALAVSG---PYVASGSSDETIHIYDMRK---------------------RKQLGILLSHAGS 85 (362)
T ss_pred ceeeeccccccccccceeEEEecc---eeEeccCCCCcEEEEeccc---------------------hhhhcceeccccc
Confidence 55332 46778999999999974 7899999999999999998 4566777789999
Q ss_pred eEEEEeCCCCC-CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 236 GYAIDWNPVAP-GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 236 v~~l~~s~~~~-~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
|+++.|.+.-. +.|++|+.||.|.+|+... |. ....+.+|.+.|++|+.+|.++ +-++.+.|+.+++|++-.++
T Consensus 86 itaL~F~~~~S~shLlS~sdDG~i~iw~~~~---W~-~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr 160 (362)
T KOG0294|consen 86 ITALKFYPPLSKSHLLSGSDDGHIIIWRVGS---WE-LLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR 160 (362)
T ss_pred eEEEEecCCcchhheeeecCCCcEEEEEcCC---eE-EeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc
Confidence 99999997652 3799999999999999855 32 2467899999999999999999 88899999999999997765
Q ss_pred ceeeEEecCCCCEEEEEEcCCC--------------------------------------CcEEEEEeCCCeEEEEeCCC
Q 039302 315 SALMSFKAHNADVNVISWNRLA--------------------------------------SCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~--------------------------------------~~~l~sgs~dg~i~iwDlr~ 356 (479)
.....--.+ ..+.+.|+|.| +..|++|++|+.|.+||...
T Consensus 161 ~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds 238 (362)
T KOG0294|consen 161 VAFVLNLKN--KATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDS 238 (362)
T ss_pred cceeeccCC--cceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCC
Confidence 211100001 11113333322 35789999999999999998
Q ss_pred CCCCCceEEEeecCCCCeEEEEEe-CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 357 LKGGDSVVAHFEYHKHPVTSIEWS-PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 357 ~~~~~~~~~~~~~h~~~I~~v~~s-p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
.. +...|.+|...|-++.+- ...+.+|+|+|.||.|+|||++... ..+|.++..+
T Consensus 239 ~~----~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~--------------------k~~~~~l~e~ 294 (362)
T KOG0294|consen 239 DT----PLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMET--------------------KKRPTLLAEL 294 (362)
T ss_pred Cc----cceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccc--------------------cCCcceeEEe
Confidence 66 899999999999999842 2245899999999999999999874 3355666666
Q ss_pred cCCCCeeeEEE
Q 039302 436 QGQKDLKELHW 446 (479)
Q Consensus 436 ~g~~~V~~v~w 446 (479)
.-...++|+..
T Consensus 295 n~~~RltCl~~ 305 (362)
T KOG0294|consen 295 NTNVRLTCLRV 305 (362)
T ss_pred ecCCccceeee
Confidence 64445666654
No 86
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.5e-26 Score=205.63 Aligned_cols=252 Identities=21% Similarity=0.367 Sum_probs=213.4
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|+..|+.++..... .++.+++.|.+.+||.+.. +.++.++.||.+.|+++.|+
T Consensus 142 re~~GHkDGiW~Vaa~~tq-pi~gtASADhTA~iWs~Es---------------------g~CL~~Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 142 RELEGHKDGIWHVAADSTQ-PICGTASADHTARIWSLES---------------------GACLATYTGHTGSVNSIKFH 199 (481)
T ss_pred hhhcccccceeeehhhcCC-cceeecccccceeEEeecc---------------------ccceeeecccccceeeEEec
Confidence 4578999999999988766 5999999999999999998 89999999999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEec------CCC------------------------------CccccCCCCcccCCCcEEEE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEP------ASD------------------------------ATWNVDPNPFIGHAASVEDL 286 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~------~~~------------------------------~~~~~~~~~~~~h~~~V~~l 286 (479)
+.+. ++++++.|++-+||.. ... ....++...+.+|.+.|.+.
T Consensus 200 ~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 200 NSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred cccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEeh
Confidence 9998 9999999999999972 110 01233445678899999999
Q ss_pred EECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE
Q 039302 287 QWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH 366 (479)
Q Consensus 287 ~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~ 366 (479)
.|-..+. .+++++.|.+..+||+.++. ++..+.+|...++.++-+|.. .++++.+.|.+.++||.|..-. .+..
T Consensus 279 dWL~gg~-Q~vTaSWDRTAnlwDVEtge-~v~~LtGHd~ELtHcstHptQ-rLVvTsSrDtTFRLWDFReaI~---sV~V 352 (481)
T KOG0300|consen 279 DWLAGGQ-QMVTASWDRTANLWDVETGE-VVNILTGHDSELTHCSTHPTQ-RLVVTSSRDTTFRLWDFREAIQ---SVAV 352 (481)
T ss_pred hhhcCcc-eeeeeeccccceeeeeccCc-eeccccCcchhccccccCCcc-eEEEEeccCceeEeccchhhcc---eeee
Confidence 9998888 89999999999999999986 888899999999999999988 9999999999999999995543 7889
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEE
Q 039302 367 FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHW 446 (479)
Q Consensus 367 ~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w 446 (479)
|.+|...|+++.|+- + ..+++||.|.+|+||||++... | +..+ .-.++++.++.
T Consensus 353 FQGHtdtVTS~vF~~-d-d~vVSgSDDrTvKvWdLrNMRs---------------------p--lATI-RtdS~~NRvav 406 (481)
T KOG0300|consen 353 FQGHTDTVTSVVFNT-D-DRVVSGSDDRTVKVWDLRNMRS---------------------P--LATI-RTDSPANRVAV 406 (481)
T ss_pred ecccccceeEEEEec-C-CceeecCCCceEEEeeeccccC---------------------c--ceee-ecCCccceeEe
Confidence 999999999999997 3 6899999999999999998852 2 1222 22357999999
Q ss_pred eCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 447 HTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 447 ~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+..++ +|+--.++. |++|++...
T Consensus 407 s~g~~-iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 407 SKGHP-IIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred ecCCc-eEEeccCCceEEEEecCCC
Confidence 98876 566555555 999988654
No 87
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.2e-26 Score=227.85 Aligned_cols=253 Identities=17% Similarity=0.294 Sum_probs=201.6
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC---CceEEEEeCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK---DEGYAIDWNPVA 245 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~l~~s~~~ 245 (479)
++..++|...++...+++.|- ..+.||.++..... ..+...+++.. -.+..+.|+...
T Consensus 39 k~~~nAIs~nr~~~qiv~AGr--s~lklyai~~~~~~-----------------~~~~~~~k~kqn~~~S~~DVkW~~~~ 99 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAGR--SLLKLYAINPNDFS-----------------EKCNHRFKTKQNKFYSAADVKWGQLY 99 (839)
T ss_pred ccccceEeecCCcceeEEecc--cceeeEeeCcccCC-----------------cceeeecccccceeeehhhcccccch
Confidence 456777888887755555433 46788888763221 12222222211 146678899776
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.++|||++..|.|.+||+....... ....|..|...|+++.|++..+++|++||.||+|++||+|..+ ...++.+...
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk-~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nSE 177 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNK-LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNSE 177 (839)
T ss_pred hhhheeecCCCcEEEEecCccccch-hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc-ccccccccch
Confidence 6799999999999999997732211 1346889999999999999999999999999999999999986 5667777888
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.|..|.|+|..++.|+++.+.|.+++||+|.... +...+.+|.++|.++.|+| ++.+|||||.|++|+|||+....
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---~~~k~~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---CEKKLTAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSR 253 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchh---HHHHhhcccCceEEEeecC-CCceeeecCCCccEEEEeccCCC
Confidence 8999999999889999999999999999999886 8889999999999999999 55999999999999999998653
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC---ceEEeeec
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG---FNILMPSN 469 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg---i~iw~~~~ 469 (479)
. ..+..++. -.+|..|+|-|..++.|++++.-+ |+||++.-
T Consensus 254 ~----------------------~~~~tInT-iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 254 A----------------------KPKHTINT-IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred c----------------------cceeEEee-cceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 1 13445554 258999999999999999988765 99999854
No 88
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.6e-26 Score=220.54 Aligned_cols=213 Identities=23% Similarity=0.311 Sum_probs=186.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe-
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW- 241 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~- 241 (479)
.++..|...||.+..+.++ ..|+++|.|-+|++|+..... .-++.++..|.+.|.||+.
T Consensus 67 asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK~W~~~~~~-------------------~~c~stir~H~DYVkcla~~ 126 (735)
T KOG0308|consen 67 ASMEHHSDWVNDIILCGNG-KTLISASSDTTVKVWNAHKDN-------------------TFCMSTIRTHKDYVKCLAYI 126 (735)
T ss_pred hhhhhhHhHHhhHHhhcCC-CceEEecCCceEEEeecccCc-------------------chhHhhhhcccchheeeeec
Confidence 4678999999999999988 567789999999999998721 2567788999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCc------cccCCCCcc-cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDAT------WNVDPNPFI-GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~------~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.++.. .+|||+-|+.|.|||++++.. ..+....+. ++..+|++++-++++. .|++|+..+.|++||.|+.+
T Consensus 127 ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~ 204 (735)
T KOG0308|consen 127 AKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCK 204 (735)
T ss_pred ccCce-eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcce-EEEecCcccceEEecccccc
Confidence 66665 999999999999999987522 111122233 8899999999999997 99999999999999999986
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
.+..+.+|...|.++..+++| ..++++|.||+|++||++..+ ++.++..|+..|+++..+|.- ..+.+|+.||
T Consensus 205 -kimkLrGHTdNVr~ll~~dDG-t~~ls~sSDgtIrlWdLgqQr----Cl~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~ 277 (735)
T KOG0308|consen 205 -KIMKLRGHTDNVRVLLVNDDG-TRLLSASSDGTIRLWDLGQQR----CLATYIVHKEGVWALQSSPSF-THVYSGGRDG 277 (735)
T ss_pred -ceeeeeccccceEEEEEcCCC-CeEeecCCCceEEeeeccccc----eeeeEEeccCceEEEeeCCCc-ceEEecCCCC
Confidence 667788999999999999999 999999999999999999988 899999999999999999955 8999999999
Q ss_pred cEEEEECCCC
Q 039302 395 QLTIWDLSLE 404 (479)
Q Consensus 395 ~I~iwdl~~~ 404 (479)
.|..=|+++.
T Consensus 278 ~i~~Tdl~n~ 287 (735)
T KOG0308|consen 278 NIYRTDLRNP 287 (735)
T ss_pred cEEecccCCc
Confidence 9999999886
No 89
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=7e-27 Score=201.37 Aligned_cols=248 Identities=15% Similarity=0.236 Sum_probs=208.5
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
..-.+.+|++.|+......+. ...|+++.|-+.+|||.-+ +..+..| .|..-|.+++
T Consensus 51 wigtfeghkgavw~~~l~~na-~~aasaaadftakvw~a~t---------------------gdelhsf-~hkhivk~~a 107 (334)
T KOG0278|consen 51 WIGTFEGHKGAVWSATLNKNA-TRAASAAADFTAKVWDAVT---------------------GDELHSF-EHKHIVKAVA 107 (334)
T ss_pred cEEeeeccCcceeeeecCchh-hhhhhhcccchhhhhhhhh---------------------hhhhhhh-hhhheeeeEE
Confidence 445788999999999998877 7889999999999999876 5667777 4888999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+.+.. +|++|+.+.-++|||++..... ...+.+|++.|..+-|...+. .|++++.|++||+||.|++. .+.++
T Consensus 108 f~~ds~-~lltgg~ekllrvfdln~p~Ap---p~E~~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt-~v~sL 181 (334)
T KOG0278|consen 108 FSQDSN-YLLTGGQEKLLRVFDLNRPKAP---PKEISGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGT-EVQSL 181 (334)
T ss_pred ecccch-hhhccchHHHhhhhhccCCCCC---chhhcCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCc-EEEEE
Confidence 999998 9999999999999999765432 467889999999999998887 88888999999999999996 55555
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
. .+..|+++..++++ .+ ++-...+.|++||..+.. ++..++. ...|.+.+.+|+. ..+++|++|..++.||
T Consensus 182 ~-~~s~VtSlEvs~dG-~i-lTia~gssV~Fwdaksf~----~lKs~k~-P~nV~SASL~P~k-~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 182 E-FNSPVTSLEVSQDG-RI-LTIAYGSSVKFWDAKSFG----LLKSYKM-PCNVESASLHPKK-EFFVAGGEDFKVYKFD 252 (334)
T ss_pred e-cCCCCcceeeccCC-CE-EEEecCceeEEecccccc----ceeeccC-ccccccccccCCC-ceEEecCcceEEEEEe
Confidence 4 45679999999999 54 445567899999999988 6777764 6679999999966 9999999999999999
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+.++.+. -.+..+++.+|.+|.|+|+|. +.+++++|| |++|.+...
T Consensus 253 y~TgeEi-----------------------~~~nkgh~gpVhcVrFSPdGE-~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 253 YNTGEEI-----------------------GSYNKGHFGPVHCVRFSPDGE-LYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ccCCcee-----------------------eecccCCCCceEEEEECCCCc-eeeccCCCceEEEEEecCC
Confidence 9998532 112334456899999999995 999999999 999988654
No 90
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=4.4e-25 Score=203.82 Aligned_cols=250 Identities=17% Similarity=0.266 Sum_probs=198.0
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.||...|+.+.++|+. ..+++++.|-.|+||.... .........|..+|+.+.
T Consensus 253 ~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~---------------------~s~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 253 ILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPL---------------------SSEPTSSRPHEEPVTGLS 310 (506)
T ss_pred hhhhccCcceEEEEEEeccch-hheeecCCcceEEeecccc---------------------ccCccccccccccceeee
Confidence 335788999999999999998 7888999999999999987 234455678999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
.+|.+. +|+++++||+..+.|++++........ ....-.+++++|+|+|- +|++|..||.|+|||+..+. .+..|
T Consensus 311 ~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~--~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~-~~a~F 385 (506)
T KOG0289|consen 311 LHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSD--ETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT-NVAKF 385 (506)
T ss_pred eccCCc-EEEEecCCceEEEEEccCCcEEEEEee--ccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCcc-ccccC
Confidence 999998 999999999999999998765432111 12234589999999998 99999999999999999886 67889
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
.+|.++|..|+|+-+| ++||++++|+.|++||+|..+ ...++.- ...+|.++.|.+.+ .+|+.++.|=+|+++
T Consensus 386 pght~~vk~i~FsENG-Y~Lat~add~~V~lwDLRKl~----n~kt~~l~~~~~v~s~~fD~SG-t~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 386 PGHTGPVKAISFSENG-YWLATAADDGSVKLWDLRKLK----NFKTIQLDEKKEVNSLSFDQSG-TYLGIAGSDLQVYIC 459 (506)
T ss_pred CCCCCceeEEEeccCc-eEEEEEecCCeEEEEEehhhc----ccceeeccccccceeEEEcCCC-CeEEeecceeEEEEE
Confidence 9999999999999999 999999999999999999987 4555543 23479999999955 899999888777777
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
+-.+..-. ++...+.+....+.+.|.... .++++++.|. ++++.
T Consensus 460 ~k~~k~W~----------------------~~~~~~~~sg~st~v~Fg~~a-q~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 460 KKKTKSWT----------------------EIKELADHSGLSTGVRFGEHA-QYLASTSMDAILRLYA 504 (506)
T ss_pred ecccccce----------------------eeehhhhcccccceeeecccc-eEEeeccchhheEEee
Confidence 64443211 111222211246777777766 5899999996 55543
No 91
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.8e-25 Score=205.82 Aligned_cols=245 Identities=16% Similarity=0.248 Sum_probs=204.0
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+|...|.+++.++++ .+||||+.|..|.||+..+ .+++..+.+|.+.|.+++|-...
T Consensus 199 ~~h~keil~~avS~Dg-kylatgg~d~~v~Iw~~~t---------------------~ehv~~~~ghr~~V~~L~fr~gt 256 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDG-KYLATGGRDRHVQIWDCDT---------------------LEHVKVFKGHRGAVSSLAFRKGT 256 (479)
T ss_pred ccccceeEEEEEcCCC-cEEEecCCCceEEEecCcc---------------------cchhhcccccccceeeeeeecCc
Confidence 4999999999999999 8999999999999999998 78888999999999999998766
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
. .|++++.|++|++|++..... ..++.+|.+.|.+|.-..-++ .+.+|+.|+++++|++... ....+.+|.+
T Consensus 257 ~-~lys~s~Drsvkvw~~~~~s~----vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ee--sqlifrg~~~ 328 (479)
T KOG0299|consen 257 S-ELYSASADRSVKVWSIDQLSY----VETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEE--SQLIFRGGEG 328 (479)
T ss_pred c-ceeeeecCCceEEEehhHhHH----HHHHhCCccceeeechhcccc-eEEeccccceeEEEecccc--ceeeeeCCCC
Confidence 5 999999999999999976443 356889999999999888887 7777779999999999543 4567889999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cC-----------CCCeEEEEEeCCCCCEEEEEeCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YH-----------KHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h-----------~~~I~~v~~sp~~~~~las~s~D 393 (479)
.+.|++|-.+. .|++|+++|.|.+|++-..+ |+.+.. +| ..+|++++..| +..++|+||.+
T Consensus 329 sidcv~~In~~--HfvsGSdnG~IaLWs~~KKk----plf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~ 401 (479)
T KOG0299|consen 329 SIDCVAFINDE--HFVSGSDNGSIALWSLLKKK----PLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWS 401 (479)
T ss_pred CeeeEEEeccc--ceeeccCCceEEEeeecccC----ceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCC
Confidence 99999998755 79999999999999999887 565543 22 23899999999 55999999999
Q ss_pred CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 394 NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 394 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
|.|++|-+..+-. +.++++...-..-|++++|++++..++++.+... +-=|...
T Consensus 402 G~vrLW~i~~g~r---------------------~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~~~ 456 (479)
T KOG0299|consen 402 GCVRLWKIEDGLR---------------------AINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWWCL 456 (479)
T ss_pred CceEEEEecCCcc---------------------ccceeeecccccEEEEEEEccCCCEEEEecccccccceeeEe
Confidence 9999999987632 2345555543346999999999988888888765 5445443
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=1e-25 Score=199.68 Aligned_cols=229 Identities=14% Similarity=0.249 Sum_probs=183.3
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+..|++++.+.+|+|+| .++|||+.|..|+|.|+........... ....... .....+.++..|.++|++|+|+
T Consensus 106 ~ylt~HK~~cR~aafs~DG-~lvATGsaD~SIKildvermlaks~~~e-m~~~~~q--a~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDG-SLVATGSADASIKILDVERMLAKSKPKE-MISGDTQ--ARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred EEEeecccceeeeeeCCCC-cEEEccCCcceEEEeehhhhhhhcchhh-hccCCcc--cCCceEeehhhccCcccceeec
Confidence 3577899999999999999 8999999999999999986433221111 0000000 0124577899999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE--
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF-- 320 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-- 320 (479)
|... +|++|+.|++|++||+....... .........+|.+|.|+|.|. +++.|..--++++||+.+.+ +....
T Consensus 182 Pre~-ILiS~srD~tvKlFDfsK~saKr--A~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Q-cfvsanP 256 (430)
T KOG0640|consen 182 PRET-ILISGSRDNTVKLFDFSKTSAKR--AFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQ-CFVSANP 256 (430)
T ss_pred chhh-eEEeccCCCeEEEEecccHHHHH--HHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEecccee-EeeecCc
Confidence 9998 99999999999999997643211 122233467899999999999 89999999999999999975 43332
Q ss_pred -ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cCC-CCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 321 -KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YHK-HPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 321 -~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h~-~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
..|...|+++.+++.+ ++.++|+.||.|+|||--+.+ ++.++. +|. ..|.+..|..++ .+++++|.|..|+
T Consensus 257 d~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r----Cv~t~~~AH~gsevcSa~Ftkn~-kyiLsSG~DS~vk 330 (430)
T KOG0640|consen 257 DDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR----CVRTIGNAHGGSEVCSAVFTKNG-KYILSSGKDSTVK 330 (430)
T ss_pred ccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH----HHHHHHhhcCCceeeeEEEccCC-eEEeecCCcceee
Confidence 5688999999999999 999999999999999988877 677764 465 468999999855 9999999999999
Q ss_pred EEECCCCCC
Q 039302 398 IWDLSLEKD 406 (479)
Q Consensus 398 iwdl~~~~~ 406 (479)
+|.+.++..
T Consensus 331 LWEi~t~R~ 339 (430)
T KOG0640|consen 331 LWEISTGRM 339 (430)
T ss_pred eeeecCCce
Confidence 999998864
No 93
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4e-25 Score=190.07 Aligned_cols=222 Identities=21% Similarity=0.326 Sum_probs=181.7
Q ss_pred eeEEEEecCCcceeEEEEec--CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 160 ILQLRKVAHQGCVNRIRAMS--QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.+...+.+|.|+|+.+.|.. .| .+||+++.||.|.||.-... .......+..|...|+
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G-~iLAScsYDgkVIiWke~~g-------------------~w~k~~e~~~h~~SVN 106 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFG-TILASCSYDGKVIIWKEENG-------------------RWTKAYEHAAHSASVN 106 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccC-cEeeEeecCceEEEEecCCC-------------------chhhhhhhhhhcccce
Confidence 56678999999999999976 55 89999999999999998773 2455667788999999
Q ss_pred EEEeCCCCCC-eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC---C----------CcEEEEEeCCC
Q 039302 238 AIDWNPVAPG-RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT---E----------SDVFASCSVDG 303 (479)
Q Consensus 238 ~l~~s~~~~~-~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~----------~~~l~s~s~dg 303 (479)
+++|.|...+ .|++++.||.|.|.+.+..+.+.. ......|.-.|++++|.|. | ...|++|+.|.
T Consensus 107 sV~wapheygl~LacasSDG~vsvl~~~~~g~w~t-~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn 185 (299)
T KOG1332|consen 107 SVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT-SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDN 185 (299)
T ss_pred eecccccccceEEEEeeCCCcEEEEEEcCCCCccc-hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCcc
Confidence 9999999877 688899999999999988655443 4567889999999999997 3 12599999999
Q ss_pred cEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCC---CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 304 NIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLA---SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 304 ~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~---~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
.|+||+.....- .-.++.+|...|..++|.|.. ...||+++.||+|.||-.+.... .-....+......++.+.|
T Consensus 186 ~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e-~wk~tll~~f~~~~w~vSW 264 (299)
T KOG1332|consen 186 LVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE-PWKKTLLEEFPDVVWRVSW 264 (299)
T ss_pred ceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-cccccccccCCcceEEEEE
Confidence 999999988632 233479999999999999965 35899999999999998874322 1122334445778999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
++.+ ++|+.++.|+.|++|.-+..
T Consensus 265 S~sG-n~LaVs~GdNkvtlwke~~~ 288 (299)
T KOG1332|consen 265 SLSG-NILAVSGGDNKVTLWKENVD 288 (299)
T ss_pred eccc-cEEEEecCCcEEEEEEeCCC
Confidence 9965 99999999999999987654
No 94
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.7e-25 Score=190.86 Aligned_cols=240 Identities=22% Similarity=0.305 Sum_probs=194.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....+|.+.|.+|+|+-+| ..+|+|+.|+++.+|++.... ........+|.+.|-.++|+
T Consensus 14 r~~~~~~~~v~Sv~wn~~g-~~lasgs~dktv~v~n~e~~r-------------------~~~~~~~~gh~~svdql~w~ 73 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDG-TKLASGSFDKTVSVWNLERDR-------------------FRKELVYRGHTDSVDQLCWD 73 (313)
T ss_pred HHhhhhhhcceEEEEcccC-ceeeecccCCceEEEEecchh-------------------hhhhhcccCCCcchhhheeC
Confidence 3567899999999999999 788999999999999998731 22234567899999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|..+.+|++++.|.+|++||++.++.... . ..++.-.-+.|+|++. +++.++.|..|.+.|.|+.+ .+.. ..
T Consensus 74 ~~~~d~~atas~dk~ir~wd~r~~k~~~~----i-~~~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~-~~~~-~~ 145 (313)
T KOG1407|consen 74 PKHPDLFATASGDKTIRIWDIRSGKCTAR----I-ETKGENINITWSPDGE-YIAVGNKDDRITFIDARTYK-IVNE-EQ 145 (313)
T ss_pred CCCCcceEEecCCceEEEEEeccCcEEEE----e-eccCcceEEEEcCCCC-EEEEecCcccEEEEEecccc-eeeh-hc
Confidence 99988999999999999999988655321 1 1233445689999999 99999999999999999875 3332 33
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
....++-++|+..+ .+++.-...|+|.|......+ ++..+++|.....||+|+|.+ ++||+|+.|-.+.+||+.
T Consensus 146 ~~~e~ne~~w~~~n-d~Fflt~GlG~v~ILsypsLk----pv~si~AH~snCicI~f~p~G-ryfA~GsADAlvSLWD~~ 219 (313)
T KOG1407|consen 146 FKFEVNEISWNNSN-DLFFLTNGLGCVEILSYPSLK----PVQSIKAHPSNCICIEFDPDG-RYFATGSADALVSLWDVD 219 (313)
T ss_pred ccceeeeeeecCCC-CEEEEecCCceEEEEeccccc----cccccccCCcceEEEEECCCC-ceEeeccccceeeccChh
Confidence 45678899999766 666655667999999998888 899999999999999999965 999999999999999997
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
..-+. .......-+|..+.|+-++. +|||+++|.
T Consensus 220 ELiC~------------------------R~isRldwpVRTlSFS~dg~-~lASaSEDh 253 (313)
T KOG1407|consen 220 ELICE------------------------RCISRLDWPVRTLSFSHDGR-MLASASEDH 253 (313)
T ss_pred Hhhhh------------------------eeeccccCceEEEEeccCcc-eeeccCccc
Confidence 65331 12222224799999999995 999999994
No 95
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=7.4e-25 Score=203.72 Aligned_cols=265 Identities=18% Similarity=0.264 Sum_probs=210.1
Q ss_pred EEecCCcceeEEEEecCCC-cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 164 RKVAHQGCVNRIRAMSQNP-HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....|.+.|++++|+|..+ .++|+|...|+|-+||+..+.. ...-+..+..|+.+|.+|.|+
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-----------------d~d~v~~f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-----------------DKDGVYLFTPHSGPVSGLKFS 243 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-----------------ccCceEEeccCCccccceEec
Confidence 4556889999999999876 8999999999999999963211 244567788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|.+..++++.+.||+|++-|++......+ ...........+++|+.... .++.+..=|...+||+|+.+.....+..
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v--~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEV--LSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHH--hhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhh
Confidence 99998999999999999999977433221 22223455678889998888 5555555569999999999866777788
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...|++|+++|..+.+|||+|.|++++|||+|.......|+...-.|..+|.++.|||.++. |++.+.|+.|+|||..
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSS 399 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCc-eEeeccCCceEEeecc
Confidence 999999999999999999999999999999999987644455556679999999999998866 9999999999999986
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC----CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK----DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~----~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
-.. ...+|.....|.... ......|+|+.. +|+.+..-. |-||+...
T Consensus 400 ~~s-------------------a~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~-li~vg~~~r~IDv~~~~~ 451 (498)
T KOG4328|consen 400 CIS-------------------AKDEPLGTIPHNNRTGRWLTPFKAAWDPDYN-LIVVGRYPRPIDVFDGNG 451 (498)
T ss_pred ccc-------------------ccCCccceeeccCcccccccchhheeCCCcc-EEEEeccCcceeEEcCCC
Confidence 221 133445566666443 366789999874 777777765 77776644
No 96
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2e-25 Score=215.36 Aligned_cols=253 Identities=18% Similarity=0.294 Sum_probs=205.9
Q ss_pred cCCccee---EEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 167 AHQGCVN---RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 167 ~H~~~V~---~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.|...|+ .+..+..+.++|.||+.||.|++|++......+. ...+.++..|.+-|+.+....
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s---------------~~~~asme~HsDWVNDiiL~~ 83 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS---------------TPYIASMEHHSDWVNDIILCG 83 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc---------------cchhhhhhhhHhHHhhHHhhc
Confidence 4556666 6666666767899999999999999988544331 224677889999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE-CCCCCcEEEEEeCCCcEEEEEcCCCCc-------
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW-SPTESDVFASCSVDGNIAIWDTRVGKS------- 315 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~-sp~~~~~l~s~s~dg~I~iwD~~~~~~------- 315 (479)
+++ .|+|++.|-+|++|+......+. ...+..|...|.|++. -++.. ++|+||.|+.|.+||+.++..
T Consensus 84 ~~~-tlIS~SsDtTVK~W~~~~~~~~c--~stir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n 159 (735)
T KOG0308|consen 84 NGK-TLISASSDTTVKVWNAHKDNTFC--MSTIRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFN 159 (735)
T ss_pred CCC-ceEEecCCceEEEeecccCcchh--HhhhhcccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhcc
Confidence 998 99999999999999998765333 4668889999999999 55554 999999999999999997621
Q ss_pred --eeeEEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 316 --ALMSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 316 --~~~~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
....+. ++...|.+++.++.+ .+|++|+..+.+++||.|+.+ .+..+++|+..|..+-.++++ ..++++|.
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~----kimkLrGHTdNVr~ll~~dDG-t~~ls~sS 233 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK----KIMKLRGHTDNVRVLLVNDDG-TRLLSASS 233 (735)
T ss_pred ccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc----ceeeeeccccceEEEEEcCCC-CeEeecCC
Confidence 222233 788899999999999 999999999999999999998 688899999999999999955 99999999
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
||+|++|||....+. ..+..|. ..|+++.-+|.-. .+.+|+.+| |..=++.+
T Consensus 234 DgtIrlWdLgqQrCl----------------------~T~~vH~--e~VWaL~~~~sf~-~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 234 DGTIRLWDLGQQRCL----------------------ATYIVHK--EGVWALQSSPSFT-HVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred CceEEeeecccccee----------------------eeEEecc--CceEEEeeCCCcc-eEEecCCCCcEEecccCC
Confidence 999999999887642 3344454 5699999999875 677888777 44444444
No 97
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=8.1e-25 Score=212.62 Aligned_cols=237 Identities=21% Similarity=0.366 Sum_probs=193.9
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
.+-+.|+..+ +||.|. ...|++|+-.. .........+...|+++.|+++|. +|++
T Consensus 180 ~nlldWss~n--~laVal-g~~vylW~~~s---------------------~~v~~l~~~~~~~vtSv~ws~~G~-~Lav 234 (484)
T KOG0305|consen 180 LNLLDWSSAN--VLAVAL-GQSVYLWSASS---------------------GSVTELCSFGEELVTSVKWSPDGS-HLAV 234 (484)
T ss_pred hhHhhcccCC--eEEEEe-cceEEEEecCC---------------------CceEEeEecCCCceEEEEECCCCC-EEEE
Confidence 4557777544 777744 45799999887 232233333478999999999998 9999
Q ss_pred EeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 252 GDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 252 g~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
|..+|.|.|||..+... ...+.+ |...|-+++|+ +. .+.+|+.|+.|.++|+|..+..+..+.+|...|..+
T Consensus 235 G~~~g~v~iwD~~~~k~----~~~~~~~h~~rvg~laW~--~~-~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKK----TRTLRGSHASRVGSLAWN--SS-VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGL 307 (484)
T ss_pred eecCCeEEEEehhhccc----cccccCCcCceeEEEecc--Cc-eEEEecCCCcEEEEEEecchhhhhhhhcccceeeee
Confidence 99999999999977544 244566 99999999998 33 899999999999999999875555588999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC--CCcEEEEECCCCCChH
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA--DNQLTIWDLSLEKDEE 408 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~--Dg~I~iwdl~~~~~~~ 408 (479)
.|++++ .+||+|+.|+.+.|||..... +...+..|.+.|.+++|+|....+||+|+. |++|++||...+..
T Consensus 308 kws~d~-~~lASGgnDN~~~Iwd~~~~~----p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~-- 380 (484)
T KOG0305|consen 308 KWSPDG-NQLASGGNDNVVFIWDGLSPE----PKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGAR-- 380 (484)
T ss_pred EECCCC-CeeccCCCccceEeccCCCcc----ccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcE--
Confidence 999999 999999999999999997666 889999999999999999999999999875 99999999998742
Q ss_pred HHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC--ceEEeeecc
Q 039302 409 EEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG--FNILMPSNI 470 (479)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg--i~iw~~~~~ 470 (479)
+-.... ...|..|.|++....++.+.|... |.||+..++
T Consensus 381 ----------------------i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~ 421 (484)
T KOG0305|consen 381 ----------------------IDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM 421 (484)
T ss_pred ----------------------eccccc-CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc
Confidence 111222 246999999999877777776654 899998765
No 98
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.93 E-value=7.2e-25 Score=214.64 Aligned_cols=217 Identities=20% Similarity=0.299 Sum_probs=183.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
...+|.+.|+.++.+|++ .-++|||.|.+|++||+....... +. ..+........++. -...|.|+.+||
T Consensus 449 ti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~---gt-----~~k~lsl~~~rtLe-l~ddvL~v~~Sp 518 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVP---GT-----QKKVLSLKHTRTLE-LEDDVLCVSVSP 518 (888)
T ss_pred hhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccC---cc-----cceeeeeccceEEe-ccccEEEEEEcC
Confidence 344899999999999999 677799999999999987532200 00 00000111122232 346899999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
++. +||.+--|.+++||-+.+.+.. ..+-||.-||.|+..+|+++ +++|||.|+.|+||-+.-+. |..++.+|
T Consensus 519 dgk-~LaVsLLdnTVkVyflDtlKFf----lsLYGHkLPV~smDIS~DSk-livTgSADKnVKiWGLdFGD-CHKS~fAH 591 (888)
T KOG0306|consen 519 DGK-LLAVSLLDNTVKVYFLDTLKFF----LSLYGHKLPVLSMDISPDSK-LIVTGSADKNVKIWGLDFGD-CHKSFFAH 591 (888)
T ss_pred CCc-EEEEEeccCeEEEEEecceeee----eeecccccceeEEeccCCcC-eEEeccCCCceEEeccccch-hhhhhhcc
Confidence 998 9999999999999999875442 34779999999999999999 99999999999999999886 88999999
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
...|.++.|-|.. .++.++|.|+.|+-||-.... .+.++.+|...|++++.+|++ .+++++|.|..|++|....
T Consensus 592 dDSvm~V~F~P~~-~~FFt~gKD~kvKqWDg~kFe----~iq~L~~H~~ev~cLav~~~G-~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 592 DDSVMSVQFLPKT-HLFFTCGKDGKVKQWDGEKFE----EIQKLDGHHSEVWCLAVSPNG-SFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred cCceeEEEEcccc-eeEEEecCcceEEeechhhhh----hheeeccchheeeeeEEcCCC-CeEEeccCCceeEeeeccC
Confidence 9999999999987 999999999999999999998 799999999999999999965 9999999999999999776
No 99
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.8e-26 Score=224.94 Aligned_cols=240 Identities=22% Similarity=0.398 Sum_probs=206.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
....|...|.+++.-..+ ..+++|+.+..+.+|.+.. ..++..|.+|..+|-+|.|++
T Consensus 23 ~~~~hsaav~~lk~~~s~-r~~~~Gg~~~k~~L~~i~k---------------------p~~i~S~~~hespIeSl~f~~ 80 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSS-RSLVTGGEDEKVNLWAIGK---------------------PNAITSLTGHESPIESLTFDT 80 (825)
T ss_pred hhhhhhhhhceeeeeccc-eeeccCCCceeeccccccC---------------------CchhheeeccCCcceeeecCc
Confidence 355799999999985444 8899999999999999987 566667999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
... +|++|+.+|+|++||+..... .+.+.+|...+..+.|+|-+. ++|+|+.|+.+++||+|... |...+.+|
T Consensus 81 ~E~-LlaagsasgtiK~wDleeAk~----vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~G-c~~~~~s~ 153 (825)
T KOG0267|consen 81 SER-LLAAGSASGTIKVWDLEEAKI----VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKG-CSHTYKSH 153 (825)
T ss_pred chh-hhcccccCCceeeeehhhhhh----hhhhhccccCcceeeeccceE-EeccccccccceehhhhccC-ceeeecCC
Confidence 987 999999999999999987544 357899999999999999999 88999999999999999764 88899999
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
...|.++.|+|+| .++++|++|.+++|||++.++ .+..|..|.+.|.++.|+|.+ .++++||.|++|++||+.+
T Consensus 154 ~~vv~~l~lsP~G-r~v~~g~ed~tvki~d~~agk----~~~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 154 TRVVDVLRLSPDG-RWVASGGEDNTVKIWDLTAGK----LSKEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred cceeEEEeecCCC-ceeeccCCcceeeeecccccc----cccccccccccccccccCchh-hhhccCCCCceeeeeccce
Confidence 9999999999999 999999999999999999988 799999999999999999966 9999999999999999986
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCCceE
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADGFNI 464 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dgi~i 464 (479)
.. ++-.-.. ..+|.+++|+|++. .+.++-...+..
T Consensus 228 fe-------------------------~I~s~~~~~~~v~~~~fn~~~~-~~~~G~q~sl~~ 263 (825)
T KOG0267|consen 228 FE-------------------------VISSGKPETDGVRSLAFNPDGK-IVLSGEQISLSE 263 (825)
T ss_pred eE-------------------------EeeccCCccCCceeeeecCCce-eeecCchhhhhh
Confidence 52 1211111 23699999999984 566665555553
No 100
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.8e-24 Score=191.36 Aligned_cols=238 Identities=18% Similarity=0.327 Sum_probs=181.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|.+|+|+|+...+++.+|.||+|++|+++.... ..+ .....|.++|.+++|+.++. .
T Consensus 27 ~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~------------------~~~-ka~~~~~~PvL~v~Wsddgs-k 86 (347)
T KOG0647|consen 27 EDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ------------------LVP-KAQQSHDGPVLDVCWSDDGS-K 86 (347)
T ss_pred ccchheeEeccccCceEEecccCCceEEEEEecCCc------------------ccc-hhhhccCCCeEEEEEccCCc-e
Confidence 467999999997778998999999999999987311 122 33456889999999999997 9
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCceeeEEe------
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGKSALMSFK------ 321 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~~~~~~~~------ 321 (479)
+++|++|+.+++||+.+++. ..+..|.++|..+.|-+... ..|++||.|++|+.||+|... ++.++.
T Consensus 87 Vf~g~~Dk~~k~wDL~S~Q~-----~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t~~LPeRvY 160 (347)
T KOG0647|consen 87 VFSGGCDKQAKLWDLASGQV-----SQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVATLQLPERVY 160 (347)
T ss_pred EEeeccCCceEEEEccCCCe-----eeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC-eeeeeeccceee
Confidence 99999999999999998754 55778999999999976543 379999999999999999764 222211
Q ss_pred -------------------------------cC----CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE
Q 039302 322 -------------------------------AH----NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH 366 (479)
Q Consensus 322 -------------------------------~h----~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~ 366 (479)
.+ .-.+.||+..++. ...|.|+-.|.+.|..+..... ..-.+
T Consensus 161 a~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~--~~nFt 237 (347)
T KOG0647|consen 161 AADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP--KDNFT 237 (347)
T ss_pred ehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCc--cCcee
Confidence 01 1235677777766 4558888899888888876531 14456
Q ss_pred eecCCC---------CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC
Q 039302 367 FEYHKH---------PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG 437 (479)
Q Consensus 367 ~~~h~~---------~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g 437 (479)
|+.|.. +|++|+|+|.. ..|+|+|.||++.+||-.... .|...-..
T Consensus 238 FkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~------------------------kLk~s~~~ 292 (347)
T KOG0647|consen 238 FKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDART------------------------KLKTSETH 292 (347)
T ss_pred EEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhh------------------------hhhccCcC
Confidence 777762 57889999965 899999999999999976542 12221223
Q ss_pred CCCeeeEEEeCCCCcEEEEEcCC
Q 039302 438 QKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 438 ~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
..+|++..|+.+|..++...+.|
T Consensus 293 ~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 293 PQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred CCccceeEecCCCCEEEEEeecc
Confidence 35899999999998777777776
No 101
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.93 E-value=8.5e-25 Score=198.71 Aligned_cols=307 Identities=19% Similarity=0.269 Sum_probs=219.9
Q ss_pred CeeecCCcccCCCCceeeeChhHHHhhhcccccCceeeEEEeeCC---------CCCC--------cccCCce-------
Q 039302 38 TKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDT---------LGLV--------RNEFPYT------- 93 (479)
Q Consensus 38 ~~~~~~~~~~~~~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~---------~~~~--------~~~~~~~------- 93 (479)
+.|+.++. ..|..+|-..+|-.--+..+.||.=++.+|.-. .++. ...+|..
T Consensus 75 fDVi~D~L----G~eR~e~P~~~Ylv~gtQa~~~~~N~l~vlkl~nl~~t~~~~~gd~~~~~eddedD~~P~~~~~~i~h 150 (440)
T KOG0302|consen 75 FDVIPDRL----GDERTEFPHTAYLVAGTQALDAPDNELMVLKLSNLHKTRNPNDGDGEDEEEDDEDDRKPQIEMKSIPH 150 (440)
T ss_pred eeeecCCC----CcccccCchHhhhhhhhhccccccCceEEEEeeeeecccCCccCCCCCccccchhhcccccccccccc
Confidence 45554433 246677888999999999999998877776521 0100 0112311
Q ss_pred -------------EEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCce
Q 039302 94 -------------AYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPI 160 (479)
Q Consensus 94 -------------~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~ 160 (479)
.-.++++. .+.+.+.||.+....+.-. ++.... -+ - ...|+
T Consensus 151 ~g~~NRvr~~~~~~~~~~asw---se~G~V~Vw~l~~~l~~l~---------------~~~~~~---~~-s----~~~Pl 204 (440)
T KOG0302|consen 151 YGGINRVRVSRLGNEVLCASW---SENGRVQVWDLAPHLNALS---------------EPGLEV---KD-S----EFRPL 204 (440)
T ss_pred ccccceeeecccCCcceeeee---cccCcEEEEEchhhhhhhc---------------Cccccc---cc-c----ccCce
Confidence 11333333 3577899998853322111 000000 00 0 01444
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+.+.+|.+.=+.|+|+|-....++||..-+.|++|...+..=. .-...|.+|+..|-.|+
T Consensus 205 --~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~------------------vd~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 205 --FTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK------------------VDQRPFTGHTKSVEDLQ 264 (440)
T ss_pred --EEecccCccceeeecccccccccccCccccceEeeeeccCcee------------------ecCccccccccchhhhc
Confidence 4788999999999999966566888888899999998762111 11233667999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--ceee
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALM 318 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~--~~~~ 318 (479)
|||...+.|+||++||+|+|||++.+..... ...+.|.+.|+-|.|+.... +||+|+.||+++|||+|+-+ .++.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~--~~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAA--VSTKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccce--eEeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcce
Confidence 9999999999999999999999988644222 23478999999999999988 99999999999999999764 3788
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC---------C---ceEEEeecC--CCCeEEEEEeCCCC
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---------D---SVVAHFEYH--KHPVTSIEWSPHEG 384 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---------~---~~~~~~~~h--~~~I~~v~~sp~~~ 384 (479)
.++-|..+|++|.|+|.....|++++.|.+|.|||+..-... . -|-+.+-.| ...|-.|.|+++.+
T Consensus 342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiP 421 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIP 421 (440)
T ss_pred eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCC
Confidence 999999999999999999899999999999999998654320 0 111122234 34688899999999
Q ss_pred CEEEEEeCCCcEE
Q 039302 385 STLAVSSADNQLT 397 (479)
Q Consensus 385 ~~las~s~Dg~I~ 397 (479)
.+|++.+.||.-.
T Consensus 422 G~lvsTa~dGfnV 434 (440)
T KOG0302|consen 422 GLLVSTAIDGFNV 434 (440)
T ss_pred CeEEEecccceeE
Confidence 9999999998443
No 102
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.93 E-value=9e-24 Score=191.42 Aligned_cols=206 Identities=18% Similarity=0.325 Sum_probs=174.0
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|+..|+++.|+.++ .+||||.-+|.|+||...+ +.....+......+.=|.
T Consensus 98 ~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~st---------------------g~~~~~~~~e~~dieWl~ 155 (399)
T KOG0296|consen 98 FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKVST---------------------GGEQWKLDQEVEDIEWLK 155 (399)
T ss_pred ceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEccc---------------------CceEEEeecccCceEEEE
Confidence 446889999999999999999 8999999999999999988 444455544556788899
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|.+. .|+.|+.||.+-+|.+.+... .+.+.+|+.++++=.|.|+|+ .++++..||+|++|+..+++ ++..+
T Consensus 156 WHp~a~-illAG~~DGsvWmw~ip~~~~----~kv~~Gh~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg~-p~~~~ 228 (399)
T KOG0296|consen 156 WHPRAH-ILLAGSTDGSVWMWQIPSQAL----CKVMSGHNSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTGQ-PLHKI 228 (399)
T ss_pred eccccc-EEEeecCCCcEEEEECCCcce----eeEecCCCCCcccccccCCCc-eEEEEecCceEEEEecCCCc-eeEEe
Confidence 999887 999999999999999987533 356889999999999999999 99999999999999987653 11111
Q ss_pred e-------------------------------------------------------------------------------
Q 039302 321 K------------------------------------------------------------------------------- 321 (479)
Q Consensus 321 ~------------------------------------------------------------------------------- 321 (479)
.
T Consensus 229 ~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG 308 (399)
T KOG0296|consen 229 TQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDG 308 (399)
T ss_pred cccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccc
Confidence 1
Q ss_pred ----------------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCC
Q 039302 322 ----------------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 322 ----------------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 385 (479)
.|...|..+.|-+ . .+|++++.+|.|+.||.|+++ ++.++.+|..+|.+++.+|+. +
T Consensus 309 ~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~----l~~~y~GH~~~Il~f~ls~~~-~ 381 (399)
T KOG0296|consen 309 TIAIYDLAASTLRHICEHEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQ----LKFTYTGHQMGILDFALSPQK-R 381 (399)
T ss_pred eEEEEecccchhheeccCCCceEEEEEcC-c-chheeeccCceEEeeeccccc----eEEEEecCchheeEEEEcCCC-c
Confidence 2334566777776 3 688999999999999999998 899999999999999999955 9
Q ss_pred EEEEEeCCCcEEEEECC
Q 039302 386 TLAVSSADNQLTIWDLS 402 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~ 402 (479)
+++|+|.|++.+||+..
T Consensus 382 ~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 382 LVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEEecCCCeEEEEecC
Confidence 99999999999999864
No 103
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.8e-23 Score=174.31 Aligned_cols=268 Identities=17% Similarity=0.287 Sum_probs=195.1
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+.+..+....-...|.+++|+|.| .+.|.|+...+++|-........-. ..... ..........-+.|.+.|+
T Consensus 21 ~~f~~i~~l~dsqairav~fhp~g-~lyavgsnskt~ric~yp~l~~~r~-~hea~-----~~pp~v~~kr~khhkgsiy 93 (350)
T KOG0641|consen 21 KHFEAINILEDSQAIRAVAFHPAG-GLYAVGSNSKTFRICAYPALIDLRH-AHEAA-----KQPPSVLCKRNKHHKGSIY 93 (350)
T ss_pred cceEEEEEecchhheeeEEecCCC-ceEEeccCCceEEEEccccccCccc-ccccc-----cCCCeEEeeeccccCccEE
Confidence 344445566677899999999999 7999999999999987654211100 00000 0000111223456889999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEEEEEECCC---CCcEEEEEeC-CCcEEEEEcCC
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVEDLQWSPT---ESDVFASCSV-DGNIAIWDTRV 312 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~-dg~I~iwD~~~ 312 (479)
|.+|+|.+. +|++|++|.+|++..++......+ ....|..|.+.|.+++|..+ +..+|++++. |-.|.+-|...
T Consensus 94 c~~ws~~ge-liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~ 172 (350)
T KOG0641|consen 94 CTAWSPCGE-LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGR 172 (350)
T ss_pred EEEecCccC-eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCC
Confidence 999999998 999999999999987765433111 12347789999999999543 3337777663 56677778777
Q ss_pred CCceeeEEecCCCCEEEE-EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--C-----CCCeEEEEEeCCCC
Q 039302 313 GKSALMSFKAHNADVNVI-SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--H-----KHPVTSIEWSPHEG 384 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l-~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h-----~~~I~~v~~sp~~~ 384 (479)
++ ....+.+|.+-|.++ .|+ + .++++|+.|.+|++||+|-.. ++.++.. | ...|.+|+..|.+
T Consensus 173 g~-~~~a~sghtghilalyswn--~-~m~~sgsqdktirfwdlrv~~----~v~~l~~~~~~~glessavaav~vdpsg- 243 (350)
T KOG0641|consen 173 GQ-GFHALSGHTGHILALYSWN--G-AMFASGSQDKTIRFWDLRVNS----CVNTLDNDFHDGGLESSAVAAVAVDPSG- 243 (350)
T ss_pred CC-cceeecCCcccEEEEEEec--C-cEEEccCCCceEEEEeeeccc----eeeeccCcccCCCcccceeEEEEECCCc-
Confidence 75 788889999988876 455 4 899999999999999999887 5665532 2 3579999999965
Q ss_pred CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ce
Q 039302 385 STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FN 463 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~ 463 (479)
++|++|-.|....+||++.+.. +...|.+...|.++.|+|.. +.+.+++.|. |+
T Consensus 244 rll~sg~~dssc~lydirg~r~------------------------iq~f~phsadir~vrfsp~a-~yllt~syd~~ik 298 (350)
T KOG0641|consen 244 RLLASGHADSSCMLYDIRGGRM------------------------IQRFHPHSADIRCVRFSPGA-HYLLTCSYDMKIK 298 (350)
T ss_pred ceeeeccCCCceEEEEeeCCce------------------------eeeeCCCccceeEEEeCCCc-eEEEEecccceEE
Confidence 9999999999999999998742 22334444689999999976 5788888885 65
Q ss_pred EEee
Q 039302 464 ILMP 467 (479)
Q Consensus 464 iw~~ 467 (479)
+-++
T Consensus 299 ltdl 302 (350)
T KOG0641|consen 299 LTDL 302 (350)
T ss_pred Eeec
Confidence 5544
No 104
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.6e-23 Score=183.54 Aligned_cols=245 Identities=15% Similarity=0.198 Sum_probs=193.3
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
-.+.|+++.|+++| .++++++.|.+++|||... ++.+.++..+.-.+..+.|-....
T Consensus 13 ~~~~i~sl~fs~~G-~~litss~dDsl~LYd~~~---------------------g~~~~ti~skkyG~~~~~Fth~~~- 69 (311)
T KOG1446|consen 13 TNGKINSLDFSDDG-LLLITSSEDDSLRLYDSLS---------------------GKQVKTINSKKYGVDLACFTHHSN- 69 (311)
T ss_pred CCCceeEEEecCCC-CEEEEecCCCeEEEEEcCC---------------------CceeeEeecccccccEEEEecCCc-
Confidence 56899999999999 5566679999999999987 677778877777788888877766
Q ss_pred eEEEEeC--CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 248 RLVSGDC--NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 248 ~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.++.++. |.+|+.-++.+.+. .+.|.||...|++|+.+|-+. .|++++.|++|++||+|..+ +...+...
T Consensus 70 ~~i~sStk~d~tIryLsl~dNky----lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~-cqg~l~~~-- 141 (311)
T KOG1446|consen 70 TVIHSSTKEDDTIRYLSLHDNKY----LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK-CQGLLNLS-- 141 (311)
T ss_pred eEEEccCCCCCceEEEEeecCce----EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC-CceEEecC--
Confidence 6666666 78999999987554 367999999999999999997 99999999999999999765 44444333
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC---CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH---KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h---~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
.-..++|.|.| -++|++.....|++||+|+... .|..+|... ....+.|+|+|++ ..|+.+...+.+++.|.-
T Consensus 142 ~~pi~AfDp~G-LifA~~~~~~~IkLyD~Rs~dk--gPF~tf~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf 217 (311)
T KOG1446|consen 142 GRPIAAFDPEG-LIFALANGSELIKLYDLRSFDK--GPFTTFSITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAF 217 (311)
T ss_pred CCcceeECCCC-cEEEEecCCCeEEEEEecccCC--CCceeEccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEcc
Confidence 33557999999 8899988888999999999863 255555543 6678999999965 888888889999999987
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.+.. .+.+..+.... --.+..|.|++. +++++++|| |++|++.+.
T Consensus 218 ~G~~----------------------~~tfs~~~~~~~~~~~a~ftPds~-Fvl~gs~dg~i~vw~~~tg 264 (311)
T KOG1446|consen 218 DGTV----------------------KSTFSGYPNAGNLPLSATFTPDSK-FVLSGSDDGTIHVWNLETG 264 (311)
T ss_pred CCcE----------------------eeeEeeccCCCCcceeEEECCCCc-EEEEecCCCcEEEEEcCCC
Confidence 7631 13333344333 236789999996 777788877 999998654
No 105
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.5e-24 Score=199.80 Aligned_cols=216 Identities=16% Similarity=0.295 Sum_probs=181.0
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
+.+--+|.|+++.-+|.| ++++.|+..|.+++|.+.+ +..+..+.+|-..|+||.|+-
T Consensus 76 q~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelss---------------------G~LL~v~~aHYQ~ITcL~fs~ 133 (476)
T KOG0646|consen 76 QYIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSS---------------------GILLNVLSAHYQSITCLKFSD 133 (476)
T ss_pred hhcccccceeeeecCCCc-eEEEeecccCcEEEEEecc---------------------ccHHHHHHhhccceeEEEEeC
Confidence 344557999999999999 7777778999999999998 788888999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCC-----CccccCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASD-----ATWNVDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~-----~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
++. .|+||+.||.|.+|.+..- .....+...|..|+-+|+++...+.+ ...++|+|.|.++++||+..+. .+
T Consensus 134 dgs-~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-LL 211 (476)
T KOG0646|consen 134 DGS-HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-LL 211 (476)
T ss_pred CCc-EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-ee
Confidence 998 9999999999999987431 11222346688999999999987763 2389999999999999999885 44
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC------------CCCceEEEeecCCC--CeEEEEEeCCC
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK------------GGDSVVAHFEYHKH--PVTSIEWSPHE 383 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~------------~~~~~~~~~~~h~~--~I~~v~~sp~~ 383 (479)
.++ .....+++++..|.+ ..+..|+.+|.|.+.++.... .....+..+.+|.+ +|+|++.+-+
T Consensus 212 lti-~fp~si~av~lDpae-~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~D- 288 (476)
T KOG0646|consen 212 LTI-TFPSSIKAVALDPAE-RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTD- 288 (476)
T ss_pred EEE-ecCCcceeEEEcccc-cEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecC-
Confidence 444 356789999999998 899999999999999886554 12345677889998 9999999985
Q ss_pred CCEEEEEeCCCcEEEEECCCCCC
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKD 406 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~ 406 (479)
+.+|++|+.||.|+|||+...+.
T Consensus 289 gtlLlSGd~dg~VcvWdi~S~Q~ 311 (476)
T KOG0646|consen 289 GTLLLSGDEDGKVCVWDIYSKQC 311 (476)
T ss_pred ccEEEeeCCCCCEEEEecchHHH
Confidence 59999999999999999988754
No 106
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.1e-23 Score=187.12 Aligned_cols=229 Identities=20% Similarity=0.311 Sum_probs=179.0
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|.+|+|+|.+..|||+ +.||.+++|++.. ......+ .|..++.+++|.+.. .
T Consensus 13 ~d~IS~v~f~~~~~~LLvs-sWDgslrlYdv~~---------------------~~l~~~~-~~~~plL~c~F~d~~--~ 67 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVS-SWDGSLRLYDVPA---------------------NSLKLKF-KHGAPLLDCAFADES--T 67 (323)
T ss_pred hhceeeEEEcCcCCcEEEE-eccCcEEEEeccc---------------------hhhhhhe-ecCCceeeeeccCCc--e
Confidence 4689999999988667766 7999999999987 2333334 488899999999854 7
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
+++|+.||.|+.+|++++.. ..+..|..+|.||..++... .+++||.|++|++||.|... +...+.. ...|.
T Consensus 68 ~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~-~~~~~d~-~kkVy 139 (323)
T KOG1036|consen 68 IVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV-VVGTFDQ-GKKVY 139 (323)
T ss_pred EEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc-ccccccc-CceEE
Confidence 99999999999999998765 34677999999999998776 99999999999999999742 4444443 34788
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCC--------------------------------------------ceE
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGD--------------------------------------------SVV 364 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~--------------------------------------------~~~ 364 (479)
++..+. +.|++|+.+..|.+||+|+..... ..-
T Consensus 140 ~~~v~g---~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skk 216 (323)
T KOG1036|consen 140 CMDVSG---NRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKK 216 (323)
T ss_pred EEeccC---CEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhc
Confidence 888774 678999999999999999765310 112
Q ss_pred EEeecCC---------CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 365 AHFEYHK---------HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 365 ~~~~~h~---------~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
..|+.|. .||++|+|+|.. ..||||+.||.|.+||+...+ .+...|
T Consensus 217 yaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rK------------------------rl~q~~ 271 (323)
T KOG1036|consen 217 YAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRK------------------------RLKQLA 271 (323)
T ss_pred eeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchh------------------------hhhhcc
Confidence 2344453 379999999964 899999999999999998875 334445
Q ss_pred cCCCCeeeEEEeCCCCcEEEEEc
Q 039302 436 QGQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 436 ~g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
.-...|..++|+-+|..|.++++
T Consensus 272 ~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 272 KYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CCCCceEEEEeccCCCeEEEEec
Confidence 44457999999999975555444
No 107
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=209.96 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=170.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.||.+.|..|.|+.++ +|.++|.|.+|+||++.. ..++..| .|.+-|+|++|+|
T Consensus 364 ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~---------------------~~CL~~F-~HndfVTcVaFnP 419 (712)
T KOG0283|consen 364 EFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGR---------------------KECLKVF-SHNDFVTCVAFNP 419 (712)
T ss_pred hhhccchhheecccccCC--eeEeccccccEEeecCCC---------------------cceeeEE-ecCCeeEEEEecc
Confidence 678999999999999987 777889999999999997 6888888 5999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE--e
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF--K 321 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~--~ 321 (479)
....+|++|+-||.|+||++...+. .....-..-|++++|.|+|+ ..+.|+.+|.+++|+++..+ ....+ .
T Consensus 420 vDDryFiSGSLD~KvRiWsI~d~~V-----v~W~Dl~~lITAvcy~PdGk-~avIGt~~G~C~fY~t~~lk-~~~~~~I~ 492 (712)
T KOG0283|consen 420 VDDRYFISGSLDGKVRLWSISDKKV-----VDWNDLRDLITAVCYSPDGK-GAVIGTFNGYCRFYDTEGLK-LVSDFHIR 492 (712)
T ss_pred cCCCcEeecccccceEEeecCcCee-----EeehhhhhhheeEEeccCCc-eEEEEEeccEEEEEEccCCe-EEEeeeEe
Confidence 9988999999999999999976433 12233347899999999998 99999999999999999875 22222 1
Q ss_pred cC------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC--CeEEEEEeCCCCCEEEEEeCC
Q 039302 322 AH------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH--PVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 322 ~h------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~--~I~~v~~sp~~~~~las~s~D 393 (479)
.| ...|+.+.|.|.....+++.+.|..|+|||++... ++..|+++.. .-....|+. ++.+|+++++|
T Consensus 493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~----lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seD 567 (712)
T KOG0283|consen 493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD----LVHKFKGFRNTSSQISASFSS-DGKHIVSASED 567 (712)
T ss_pred eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh----hhhhhcccccCCcceeeeEcc-CCCEEEEeecC
Confidence 11 22799999999887778888899999999998877 7888887543 335678998 55999999999
Q ss_pred CcEEEEECCC
Q 039302 394 NQLTIWDLSL 403 (479)
Q Consensus 394 g~I~iwdl~~ 403 (479)
..|+||++..
T Consensus 568 s~VYiW~~~~ 577 (712)
T KOG0283|consen 568 SWVYIWKNDS 577 (712)
T ss_pred ceEEEEeCCC
Confidence 9999999843
No 108
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.92 E-value=6.6e-24 Score=213.71 Aligned_cols=235 Identities=24% Similarity=0.378 Sum_probs=195.3
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~ 245 (479)
.|...+.+..|+. ..+++++.++++++|+... ...+.. +.||.+.|+++++..-+
T Consensus 206 ~~~~~~~~~q~~~---~~~~~~s~~~tl~~~~~~~---------------------~~~i~~~l~GH~g~V~~l~~~~~~ 261 (537)
T KOG0274|consen 206 TDDHVVLCLQLHD---GFFKSGSDDSTLHLWDLNN---------------------GYLILTRLVGHFGGVWGLAFPSGG 261 (537)
T ss_pred cCcchhhhheeec---CeEEecCCCceeEEeeccc---------------------ceEEEeeccCCCCCceeEEEecCC
Confidence 3677888888882 4788999999999999987 555666 99999999999998844
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.+|++|+.|.++++||..++... ..+.+|.+.|.++...+. ++++||.|.+|++|++.++. ++..+.+|..
T Consensus 262 -~~lvsgS~D~t~rvWd~~sg~C~----~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~ 332 (537)
T KOG0274|consen 262 -DKLVSGSTDKTERVWDCSTGECT----HSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGA-CLNLLRGHTG 332 (537)
T ss_pred -CEEEEEecCCcEEeEecCCCcEE----EEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcc-eEEEeccccc
Confidence 49999999999999999887663 557899999999987643 78889999999999999885 7778888999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC-
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE- 404 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~- 404 (479)
.|+++..+ + .++++|+.||+|+|||+++++ ++.++.+|...|+++.+.+. ..+++|+.|++|++||+...
T Consensus 333 ~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~----cl~sl~gH~~~V~sl~~~~~--~~~~Sgs~D~~IkvWdl~~~~ 403 (537)
T KOG0274|consen 333 PVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGK----CLKSLSGHTGRVYSLIVDSE--NRLLSGSLDTTIKVWDLRTKR 403 (537)
T ss_pred cEEEEEec--C-CEEEEEecCceEEEEEhhhce----eeeeecCCcceEEEEEecCc--ceEEeeeeccceEeecCCchh
Confidence 99999999 4 799999999999999999888 89999999999999988762 89999999999999999988
Q ss_pred CChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 405 KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++. ..+..|. .-|.++.+.. .+|+|++.|+ |++|+....
T Consensus 404 ~c~----------------------~tl~~h~--~~v~~l~~~~---~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 404 KCI----------------------HTLQGHT--SLVSSLLLRD---NFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred hhh----------------------hhhcCCc--cccccccccc---ceeEeccccccEEEeecccC
Confidence 321 2222232 2355555443 3788888888 999977654
No 109
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.92 E-value=1.8e-23 Score=203.52 Aligned_cols=278 Identities=16% Similarity=0.198 Sum_probs=203.6
Q ss_pred CceeEEEEecCCcceeEEEEecCC----------CcEEEEEeCCceEEEEeCCCCccccccccccc-------CCCC--C
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQN----------PHICASWADTGHVQVWDFRSHLNALAESETVA-------GHGA--P 218 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~----------~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~-------~~~~--~ 218 (479)
++-....+..|...|+.|...|.+ +..+.||+.||+|++|++....+..-...... .+.. .
T Consensus 358 kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~ 437 (1080)
T KOG1408|consen 358 KVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQ 437 (1080)
T ss_pred cccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCch
Confidence 333446788999999999888832 34688999999999999987322111000000 0000 0
Q ss_pred cc-------ccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC
Q 039302 219 QV-------LNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT 291 (479)
Q Consensus 219 ~~-------~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~ 291 (479)
.. .-.+......+....+.+++.+|++. .||+|+.-|+|+||++..... ...+..|.+.|.|+.|+..
T Consensus 438 q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~Lq~l~~----~~~~eAHesEilcLeyS~p 512 (1080)
T KOG1408|consen 438 QIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVYDLQELEY----TCFMEAHESEILCLEYSFP 512 (1080)
T ss_pred hhhhhccCCcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEEEehhhhh----hhheecccceeEEEeecCc
Confidence 00 00111112223445789999999999 999999999999999976443 3557899999999999853
Q ss_pred --CCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCC---------------------------------
Q 039302 292 --ESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLA--------------------------------- 336 (479)
Q Consensus 292 --~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~--------------------------------- 336 (479)
+..+||+++.|..|+|||+...-.++.++..|...|+++.|--.+
T Consensus 513 ~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~ 592 (1080)
T KOG1408|consen 513 VLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQ 592 (1080)
T ss_pred hhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccc
Confidence 334899999999999999987655666777777777776664322
Q ss_pred ---------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---CCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 337 ---------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---HKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 337 ---------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
..++++++.|..|+|||+.+++ ..+.|++ |.+....+...|.+ .+||+++.|.++.+
T Consensus 593 t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgK----q~k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~ 667 (1080)
T KOG1408|consen 593 TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGK----QVKSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCF 667 (1080)
T ss_pred ccccceEEEeeeCCCcceEEEEecccceEEEeccccc----eeeeecccccCCCceEEEEECCCc-cEEEEeecCCceEE
Confidence 2688999999999999999998 6888876 66778899999955 99999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
+|+..+.+. ..++.|. ..|+.+.|.++..++|...+++.|.||++..
T Consensus 668 ~Df~sgEcv----------------------A~m~GHs--E~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 668 VDFVSGECV----------------------AQMTGHS--EAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EEeccchhh----------------------hhhcCcc--hheeeeeecccchhheeecCCceEEEEECch
Confidence 999998643 2245554 4699999999997555555544499999853
No 110
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.92 E-value=2.2e-23 Score=181.57 Aligned_cols=261 Identities=16% Similarity=0.216 Sum_probs=197.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
-...+|++.|+|+....+. ..++||+.|.+++|||+.. ++.+.+++. ..+|..+.|+
T Consensus 46 Gty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~t---------------------Gk~la~~k~-~~~Vk~~~F~ 102 (327)
T KOG0643|consen 46 GTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVET---------------------GKQLATWKT-NSPVKRVDFS 102 (327)
T ss_pred eeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCC---------------------CcEEEEeec-CCeeEEEeec
Confidence 4678999999999999988 6788999999999999998 778887763 5689999999
Q ss_pred CCCCCeEEEEe-----CCCeEEEEecCCCCcccc---CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 243 PVAPGRLVSGD-----CNSCIHLWEPASDATWNV---DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 243 ~~~~~~l~sg~-----~dg~I~lwd~~~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
+.+. +++.+. ..+.|.++|++....... +...+..+.+.++.+-|.|-+. .+++|..||.|.+||++++.
T Consensus 103 ~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~ 180 (327)
T KOG0643|consen 103 FGGN-LILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGK 180 (327)
T ss_pred cCCc-EEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCc
Confidence 9997 555553 346899999975432111 1233455678999999999999 99999999999999999987
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
..+.+...|...|+.|+++|+. .++++|+.|.+-++||.++.. .+.++.. ..||++.+++|....+++.|+.+-
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~-T~FiT~s~Dttakl~D~~tl~----v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDR-TYFITGSKDTTAKLVDVRTLE----VLKTYTT-ERPVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred eeeechhhhccccccccccCCc-ceEEecccCccceeeecccee----eEEEeee-cccccceecccccceEEecCCcee
Confidence 6777778899999999999999 999999999999999999998 7888774 779999999997755555555543
Q ss_pred -cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 395 -QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 395 -~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
-|.-=..+.++-+... |..-..+.. --+..|- .+|++|+|||+|. ..+||++|| |++...
T Consensus 255 ~dVTTT~~r~GKFEArF--yh~i~eEEi--------grvkGHF--GPINsvAfhPdGk-sYsSGGEDG~VR~h~F 316 (327)
T KOG0643|consen 255 MDVTTTSTRAGKFEARF--YHLIFEEEI--------GRVKGHF--GPINSVAFHPDGK-SYSSGGEDGYVRLHHF 316 (327)
T ss_pred eeeeeecccccchhhhH--HHHHHHHHh--------ccccccc--cCcceeEECCCCc-ccccCCCCceEEEEEe
Confidence 2332233333221111 000000000 1122232 4799999999996 889999999 776654
No 111
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1e-21 Score=175.55 Aligned_cols=242 Identities=14% Similarity=0.230 Sum_probs=186.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
....++-.|..++|......++.+ +. |.+|+.-++.. .+.++.|.||...|..|+.
T Consensus 51 ti~skkyG~~~~~Fth~~~~~i~s-Stk~d~tIryLsl~d---------------------NkylRYF~GH~~~V~sL~~ 108 (311)
T KOG1446|consen 51 TINSKKYGVDLACFTHHSNTVIHS-STKEDDTIRYLSLHD---------------------NKYLRYFPGHKKRVNSLSV 108 (311)
T ss_pred EeecccccccEEEEecCCceEEEc-cCCCCCceEEEEeec---------------------CceEEEcCCCCceEEEEEe
Confidence 444556688999998877445543 54 78999999987 7889999999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-CceeeEE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG-KSALMSF 320 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~-~~~~~~~ 320 (479)
+|.+. .++|++.|++|++||++..+.... + +...-..++|.|+|- +||++.....|+|||+|.- +.|..++
T Consensus 109 sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~----l--~~~~~pi~AfDp~GL-ifA~~~~~~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 109 SPKDD-TFLSSSLDKTVRLWDLRVKKCQGL----L--NLSGRPIAAFDPEGL-IFALANGSELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred cCCCC-eEEecccCCeEEeeEecCCCCceE----E--ecCCCcceeECCCCc-EEEEecCCCeEEEEEecccCCCCceeE
Confidence 99997 999999999999999986544221 1 122334579999998 8999988889999999986 3355555
Q ss_pred e---cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe---EEEEEeCCCCCEEEEEeCCC
Q 039302 321 K---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV---TSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 321 ~---~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I---~~v~~sp~~~~~las~s~Dg 394 (479)
. ......+.|.|+|+| .+|+.+...+.+++.|.-.+. ...++..+...- .+..|.|++ .++++|+.||
T Consensus 181 ~i~~~~~~ew~~l~FS~dG-K~iLlsT~~s~~~~lDAf~G~----~~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg 254 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFSPDG-KSILLSTNASFIYLLDAFDGT----VKSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDG 254 (311)
T ss_pred ccCCCCccceeeeEEcCCC-CEEEEEeCCCcEEEEEccCCc----EeeeEeeccCCCCcceeEEECCCC-cEEEEecCCC
Confidence 3 346778999999999 778888889999999998887 788888766543 578899965 9999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC--CCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG--QKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g--~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+|.+|++.++.. +..-.+ ..++.++.|+|.-. +++ ++...+.+|-+.
T Consensus 255 ~i~vw~~~tg~~-------------------------v~~~~~~~~~~~~~~~fnP~~~-mf~-sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 255 TIHVWNLETGKK-------------------------VAVLRGPNGGPVSCVRFNPRYA-MFV-SASSNLVFWLPD 303 (311)
T ss_pred cEEEEEcCCCcE-------------------------eeEecCCCCCCccccccCCcee-eee-ecCceEEEEecc
Confidence 999999987742 111111 24689999999863 444 444446777654
No 112
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=4.9e-23 Score=191.85 Aligned_cols=276 Identities=16% Similarity=0.169 Sum_probs=208.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe-cCCCCceEEEEe
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF-GGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~ 241 (479)
.....|.-.|.++.++|++ .++.+++.+|+|.=|++......-.-...... ......++..- ++|..++.+++.
T Consensus 136 ~~~~~H~~s~~~vals~d~-~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev----~k~~~~~~k~~r~~h~keil~~av 210 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDD-KRVFSASKDGTILKWDVLTGKKDRYIIERDEV----LKSHGNPLKESRKGHVKEILTLAV 210 (479)
T ss_pred eeeccccCcceEEEeeccc-cceeecCCCcceeeeehhcCcccccccccchh----hhhccCCCCcccccccceeEEEEE
Confidence 4567899999999999999 67779999999999998774322000000000 00012222222 489999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++++. +||+|+.|..|.||+..+... .+.+.+|.+.|.+++|-.... -+.+++.|++|++|++.... .+.++.
T Consensus 211 S~Dgk-ylatgg~d~~v~Iw~~~t~eh----v~~~~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s-~vetly 283 (479)
T KOG0299|consen 211 SSDGK-YLATGGRDRHVQIWDCDTLEH----VKVFKGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLS-YVETLY 283 (479)
T ss_pred cCCCc-EEEecCCCceEEEecCcccch----hhcccccccceeeeeeecCcc-ceeeeecCCceEEEehhHhH-HHHHHh
Confidence 99998 999999999999999988665 355899999999999976544 89999999999999999874 677889
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...|..|.-.... ..+-+|+.|+++++|++... ....|.+|.+.+-|++|-. ...|++||.||.|.+|++
T Consensus 284 GHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~ee-----sqlifrg~~~sidcv~~In--~~HfvsGSdnG~IaLWs~ 355 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEE-----SQLIFRGGEGSIDCVAFIN--DEHFVSGSDNGSIALWSL 355 (479)
T ss_pred CCccceeeechhccc-ceEEeccccceeEEEecccc-----ceeeeeCCCCCeeeEEEec--ccceeeccCCceEEEeee
Confidence 999999999888777 77778889999999999433 4567889999999999985 478999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
...+.....+ .+-.+.+.+ -.-.+...|++++..|.. .|++|++.+| |++|++..-.
T Consensus 356 ~KKkplf~~~-----------~AHgv~~~~-~~~~~~~Witsla~i~~s-dL~asGS~~G~vrLW~i~~g~ 413 (479)
T KOG0299|consen 356 LKKKPLFTSR-----------LAHGVIPEL-DPVNGNFWITSLAVIPGS-DLLASGSWSGCVRLWKIEDGL 413 (479)
T ss_pred cccCceeEee-----------ccccccCCc-cccccccceeeeEecccC-ceEEecCCCCceEEEEecCCc
Confidence 8775321100 000011111 001111369999999987 4999999999 9999987653
No 113
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=3.2e-23 Score=190.38 Aligned_cols=252 Identities=17% Similarity=0.179 Sum_probs=198.5
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+..|+.+|+-+.|+++| ++|||++.|.+..||.+.... ..+...++.+|..+|..+.|||
T Consensus 219 il~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~------------------~~kl~~tlvgh~~~V~yi~wSP 279 (519)
T KOG0293|consen 219 ILQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDV------------------HFKLKKTLVGHSQPVSYIMWSP 279 (519)
T ss_pred hHhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCc------------------ceeeeeeeecccCceEEEEECC
Confidence 467899999999999999 899999999999999987632 2456788999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
+.. +|++|+.+..+.+||+.++.... ..-.+|..++.+++|.|++. .|++|+.|++|..||+.... .....+-
T Consensus 280 Ddr-yLlaCg~~e~~~lwDv~tgd~~~---~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~--~~~W~gv 352 (519)
T KOG0293|consen 280 DDR-YLLACGFDEVLSLWDVDTGDLRH---LYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNI--LGNWEGV 352 (519)
T ss_pred CCC-eEEecCchHheeeccCCcchhhh---hcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcch--hhccccc
Confidence 998 99999999999999999876532 11223568999999999999 89999999999999998652 3333322
Q ss_pred -CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 324 -NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 324 -~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...|.+++..++| ..+++.+.|..|++|+..... ... +..-..+|++++.|.++ .++++.=.+..|.+||+.
T Consensus 353 r~~~v~dlait~Dg-k~vl~v~~d~~i~l~~~e~~~----dr~-lise~~~its~~iS~d~-k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 353 RDPKVHDLAITYDG-KYVLLVTVDKKIRLYNREARV----DRG-LISEEQPITSFSISKDG-KLALVNLQDQEIHLWDLE 425 (519)
T ss_pred ccceeEEEEEcCCC-cEEEEEecccceeeechhhhh----hhc-cccccCceeEEEEcCCC-cEEEEEcccCeeEEeecc
Confidence 2468999999999 677777789999999987655 222 22235799999999855 888888889999999998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.... ++..+.|....-|..-+|--....+++||++|+ |+||+..+.
T Consensus 426 e~~l----------------------v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 426 ENKL----------------------VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred hhhH----------------------HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 4321 133455543334555666665557999999999 999987654
No 114
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=3.7e-23 Score=199.44 Aligned_cols=257 Identities=21% Similarity=0.327 Sum_probs=190.8
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE--EecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV--KFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~ 241 (479)
....|...|..+.|.| +..+|++++.|.++++||+.. ..... .+.||...|.+++|
T Consensus 95 ~~~aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~---------------------s~l~G~~~~~GH~~SvkS~cf 152 (720)
T KOG0321|consen 95 KPLAHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKT---------------------SRLVGGRLNLGHTGSVKSECF 152 (720)
T ss_pred ccccccceeEeeccCC-CceeEEEccCCceeeeeeecc---------------------ceeecceeecccccccchhhh
Confidence 5678999999999999 768999999999999999987 23332 47899999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCc-------------cc---cC-------CCCcccCCCcEEE---EEECCCCCcE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDAT-------------WN---VD-------PNPFIGHAASVED---LQWSPTESDV 295 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~-------------~~---~~-------~~~~~~h~~~V~~---l~~sp~~~~~ 295 (479)
.|.++..|++|+.||.|.|||++-... .. .. ......+...|.+ +.+..++. .
T Consensus 153 ~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-t 231 (720)
T KOG0321|consen 153 MPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-T 231 (720)
T ss_pred ccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-e
Confidence 999999999999999999999875431 00 00 0112233334444 44445555 7
Q ss_pred EEEEeC-CCcEEEEEcCCCCc-----e--eeEEecC---CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE
Q 039302 296 FASCSV-DGNIAIWDTRVGKS-----A--LMSFKAH---NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVV 364 (479)
Q Consensus 296 l~s~s~-dg~I~iwD~~~~~~-----~--~~~~~~h---~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~ 364 (479)
||+++. |+.|++||+|.... + ...+..| ...+.++.....|..++|++ .|+.|++|+++... ..++
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm~s~s--~sP~ 308 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNMRSLS--ISPV 308 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEeccccC--cCch
Confidence 888887 99999999998642 1 1222333 44678888888885555555 59999999999876 3466
Q ss_pred EEeecCCCCe--EEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCee
Q 039302 365 AHFEYHKHPV--TSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLK 442 (479)
Q Consensus 365 ~~~~~h~~~I--~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~ 442 (479)
..+.+|...- ..-..+|++ .+|++|+.|...++|.+... ..|+.++..|. ..|+
T Consensus 309 ~~~sg~~~~sf~vks~lSpd~-~~l~SgSsd~~ayiw~vs~~---------------------e~~~~~l~Ght--~eVt 364 (720)
T KOG0321|consen 309 AEFSGKLNSSFYVKSELSPDD-CSLLSGSSDEQAYIWVVSSP---------------------EAPPALLLGHT--REVT 364 (720)
T ss_pred hhccCcccceeeeeeecCCCC-ceEeccCCCcceeeeeecCc---------------------cCChhhhhCcc--eEEE
Confidence 6666654321 122457855 99999999999999999987 34556666665 5799
Q ss_pred eEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 443 ELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 443 ~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.++|.|..-.=+++|++|. ++||++.+-
T Consensus 365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 365 TVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred EEeeccccCCCceeeccCcceEEEeccCc
Confidence 9999998766678888887 999999765
No 115
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.92 E-value=2.8e-23 Score=182.89 Aligned_cols=272 Identities=17% Similarity=0.308 Sum_probs=207.4
Q ss_pred CCCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCC
Q 039302 49 EEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPN 128 (479)
Q Consensus 49 ~~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~ 128 (479)
+++.|+..++. +.+++|...+.|+|+..| .|| .++|- ...+|.||++..
T Consensus 82 ~~s~e~~~~a~-------fd~~YP~tK~~wiPd~~g----~~p---dlLAT------s~D~LRlWri~~----------- 130 (364)
T KOG0290|consen 82 EDSGELVEDAN-------FDHPYPVTKLMWIPDSKG----VYP---DLLAT------SSDFLRLWRIGD----------- 130 (364)
T ss_pred cCCCceeccCC-------CCCCCCccceEecCCccc----cCc---chhhc------ccCeEEEEeccC-----------
Confidence 45556665654 788999999999999765 356 46663 567999999930
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccc
Q 039302 129 KPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAE 208 (479)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~ 208 (479)
||..... ..-....+...|.+++++..|+.-.+++|.+.|-|-+..|||+....
T Consensus 131 -------------------ee~~~~~--~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~----- 184 (364)
T KOG0290|consen 131 -------------------EESRVEL--QSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV----- 184 (364)
T ss_pred -------------------cCCceeh--hhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc-----
Confidence 0000000 01111123456778999999999999999999999999999998831
Q ss_pred cccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE
Q 039302 209 SETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW 288 (479)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~ 288 (479)
.+.....+-.|..+|+.++|...+...||+.+.||.+++||++....... ...-.....+...++|
T Consensus 185 -------------~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI-IYE~p~~~~pLlRLsw 250 (364)
T KOG0290|consen 185 -------------SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI-IYEDPSPSTPLLRLSW 250 (364)
T ss_pred -------------ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE-EecCCCCCCcceeecc
Confidence 12234557789999999999998877999999999999999987544221 1111112457889999
Q ss_pred CCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--CCceEE
Q 039302 289 SPTESDVFASCSVD-GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--GDSVVA 365 (479)
Q Consensus 289 sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--~~~~~~ 365 (479)
++++.+++|+-..| ..|.|.|+|.+..++..+..|.+.||.|+|.|.....|+|+++|..+.|||+...-. ...|+.
T Consensus 251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil 330 (364)
T KOG0290|consen 251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL 330 (364)
T ss_pred CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence 99999899886655 579999999998899999999999999999999999999999999999999986543 123455
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 366 HFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 366 ~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
.+. -.+.|+.++|+|..+..|+.+..
T Consensus 331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 331 AYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhh-ccceeeeeeecccCCCEEEEEec
Confidence 454 46789999999988888888764
No 116
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=8.4e-23 Score=180.17 Aligned_cols=226 Identities=20% Similarity=0.338 Sum_probs=177.5
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCC---cEEecCCCCceEEEEe
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSP---LVKFGGHKDEGYAIDW 241 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~l~~ 241 (479)
...|.|.||++...+....++++|+.||.|.|||++.....-. ..... ...+ ...-.+|.-.|..+.|
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~-s~li~--------k~~c~v~~~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA-SGLIA--------KHKCIVAKQHENGHKYAISSAIW 109 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh-cccee--------heeeeccccCCccceeeeeeeEE
Confidence 3579999999999998779999999999999999987321100 00000 0111 1122468889999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES--DVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
-|...|.+.+++.|.++++||.++.+... ...-.+.|.+-+|+|-.. .++|+|..+-.|++.|+.++. ...+
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~-----~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-~sH~ 183 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAV-----DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-FSHT 183 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeE-----EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc-ceee
Confidence 99999999999999999999998865422 122356788888888532 378888899999999999985 7889
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-----------CceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG-----------DSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~-----------~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
+.+|...|.++.|+|.....|++|+.||.|++||+|..... .+.+.+-..|.+.|..++|..++ .+++
T Consensus 184 LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~ 262 (397)
T KOG4283|consen 184 LSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLA 262 (397)
T ss_pred eccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccc-hhhh
Confidence 99999999999999999899999999999999999976320 11222344577889999999854 9999
Q ss_pred EEeCCCcEEEEECCCCCC
Q 039302 389 VSSADNQLTIWDLSLEKD 406 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~~~~ 406 (479)
+++.|.++++|+...+..
T Consensus 263 ~~gtd~r~r~wn~~~G~n 280 (397)
T KOG4283|consen 263 SCGTDDRIRVWNMESGRN 280 (397)
T ss_pred hccCccceEEeecccCcc
Confidence 999999999999988754
No 117
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=4.4e-23 Score=210.57 Aligned_cols=258 Identities=21% Similarity=0.363 Sum_probs=201.3
Q ss_pred CCcceeEEEEecCCCcEEEEEe--CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWA--DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
+...|..|..+|++ ..+|||+ .||.+.||+...-.......... -.+.+.+...|.+.|.|+.|+|+|
T Consensus 12 ~~~~IfSIdv~pdg-~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~---------l~k~l~~m~~h~~sv~CVR~S~dG 81 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDG-VKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN---------LPKHLCTMDDHDGSVNCVRFSPDG 81 (942)
T ss_pred CCeeEEEEEecCCc-eeEecCCccccccceeeccccccchhhhhhcc---------cchhheeeccccCceeEEEECCCC
Confidence 34568999999999 7899999 89999999987643222111100 146677888999999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCC---------------ccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 246 PGRLVSGDCNSCIHLWEPASDA---------------TWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~---------------~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
. +||+|+.|+.|.||...... .|.. ...+.+|...|.+++|+|++. +|+++|.|++|.||+.
T Consensus 82 ~-~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~-~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~ 158 (942)
T KOG0973|consen 82 S-YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKV-VSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNA 158 (942)
T ss_pred C-eEeeccCcceEEEeeecccCCcccccccccccccceeeE-EEEEecCCCccceeccCCCcc-EEEEecccceEEEEcc
Confidence 9 99999999999999987310 0111 244778999999999999998 9999999999999999
Q ss_pred CCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------CCCeEEEEEeCCCC
Q 039302 311 RVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------KHPVTSIEWSPHEG 384 (479)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------~~~I~~v~~sp~~~ 384 (479)
++. ..+..+.+|.+.|..+.|.|-| .+||+-++|++|+||++.... ..+.+..+ ..-++.+.|+|++
T Consensus 159 ~tF-~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~----i~k~It~pf~~~~~~T~f~RlSWSPDG- 231 (942)
T KOG0973|consen 159 KTF-ELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWG----IEKSITKPFEESPLTTFFLRLSWSPDG- 231 (942)
T ss_pred ccc-eeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccce----eeEeeccchhhCCCcceeeecccCCCc-
Confidence 999 5888999999999999999999 999999999999999987765 45555443 2347899999965
Q ss_pred CEEEEEeC----CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC----------
Q 039302 385 STLAVSSA----DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV---------- 450 (479)
Q Consensus 385 ~~las~s~----Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~---------- 450 (479)
.+|++.-. -.++.|.+-.+.+.. .-+..|. .++..++|+|.-
T Consensus 232 ~~las~nA~n~~~~~~~IieR~tWk~~----------------------~~LvGH~--~p~evvrFnP~lfe~~~~ng~~ 287 (942)
T KOG0973|consen 232 HHLASPNAVNGGKSTIAIIERGTWKVD----------------------KDLVGHS--APVEVVRFNPKLFERNNKNGTS 287 (942)
T ss_pred CeecchhhccCCcceeEEEecCCceee----------------------eeeecCC--CceEEEEeChHHhccccccCCc
Confidence 88888644 335666655443211 2344454 589999999821
Q ss_pred --C----cEEEEEcCCC-ceEEeeec
Q 039302 451 --P----GMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 451 --~----~ll~s~~~dg-i~iw~~~~ 469 (479)
+ .++|+|+.|+ |.||.+..
T Consensus 288 ~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 288 TQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cCCCcceEEEEEecCCccEEEEecCC
Confidence 1 1789999999 99998744
No 118
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.8e-24 Score=219.22 Aligned_cols=216 Identities=21% Similarity=0.337 Sum_probs=185.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.+...|+|.|..+.|++..++++|+|+.+|.|.|||+++....+ .+- -.....+|.+|+|+
T Consensus 110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~-----------------~~~--~~~~~~eI~~lsWN 170 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPF-----------------TPG--SQAPPSEIKCLSWN 170 (1049)
T ss_pred hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCC-----------------CCC--CCCCcccceEeccc
Confidence 57789999999999999998999999999999999999832211 110 11235699999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccC--CCcEEEEEECCCCCcEEEEEeCCC---cEEEEEcCCCCcee
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH--AASVEDLQWSPTESDVFASCSVDG---NIAIWDTRVGKSAL 317 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~~l~s~s~dg---~I~iwD~~~~~~~~ 317 (479)
......|++++.+|.+.|||++..+. . ..+..+ ...+..|+|+|++.+.+++++.|. .|.+||+|....++
T Consensus 171 rkvqhILAS~s~sg~~~iWDlr~~~p-i---i~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~ 246 (1049)
T KOG0307|consen 171 RKVSHILASGSPSGRAVIWDLRKKKP-I---IKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL 246 (1049)
T ss_pred hhhhHHhhccCCCCCceeccccCCCc-c---cccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence 98887999999999999999987533 2 222222 245889999999998899988764 59999999988888
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
..+.+|..+|.+++|++.+..+|++++.|+.|.+|+..+++ .+..+.....++..+.|+|.++.+|++++-||.|.
T Consensus 247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE----vl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE----VLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCce----EeeecCCCCcceeeeeecCCCcchhhhheecccee
Confidence 99999999999999999998999999999999999999988 78999988999999999999988999999999999
Q ss_pred EEECCCCC
Q 039302 398 IWDLSLEK 405 (479)
Q Consensus 398 iwdl~~~~ 405 (479)
||.+....
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99998764
No 119
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=1.1e-22 Score=197.90 Aligned_cols=238 Identities=18% Similarity=0.252 Sum_probs=197.4
Q ss_pred EEEecCCcceeE-EEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 163 LRKVAHQGCVNR-IRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~~~V~~-v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
....+|.+-|.. +++.+.....+++|+.|+++.+|.... ..|+.++.+|...|.+++.
T Consensus 51 ~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~---------------------~~P~~~LkgH~snVC~ls~ 109 (745)
T KOG0301|consen 51 HAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQ---------------------AEPLYTLKGHKSNVCSLSI 109 (745)
T ss_pred eecccCcceeeccceeccccCcceEeecccceEEEEecCC---------------------CCchhhhhccccceeeeec
Confidence 456678888888 888875546788999999999999987 7899999999999999988
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
..++ .++|||-|.++++|.+.... ..+.+|+.+|..+..-|.+ .++|||.|++|++|.-. ..+.++.
T Consensus 110 ~~~~--~~iSgSWD~TakvW~~~~l~------~~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~---~~l~tf~ 176 (745)
T KOG0301|consen 110 GEDG--TLISGSWDSTAKVWRIGELV------YSLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG---TLLKTFS 176 (745)
T ss_pred CCcC--ceEecccccceEEecchhhh------cccCCcchheeeeeecCCC--cEEeccCcceeeeccCC---chhhhhc
Confidence 7765 59999999999999875422 3488999999999999987 59999999999999763 3678899
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...|..+++-+++ -|++++.||.|++|++ ++. .+..+.+|+.-|+++...+.+ ..++++|+|++++||+.
T Consensus 177 gHtD~VRgL~vl~~~--~flScsNDg~Ir~w~~-~ge----~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~ 248 (745)
T KOG0301|consen 177 GHTDCVRGLAVLDDS--HFLSCSNDGSIRLWDL-DGE----VLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKK 248 (745)
T ss_pred cchhheeeeEEecCC--CeEeecCCceEEEEec-cCc----eeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeec
Confidence 999999999999875 5899999999999999 455 799999999999999966644 89999999999999998
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
..-. +.+ .|. ...|+++..-+++. +++.++++.|+||....
T Consensus 249 ~e~~------------------------q~I-~lP-ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 249 DECV------------------------QVI-TLP-TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred CceE------------------------EEE-ecC-ccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 7221 222 232 25799999999985 55555555599997653
No 120
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.91 E-value=8.6e-23 Score=198.75 Aligned_cols=245 Identities=22% Similarity=0.270 Sum_probs=200.0
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE-
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA- 238 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~- 238 (479)
.+...+.+|...|..+++.+.. .++++|.||++++|+-... .......+.+|.+-|..
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~-------------------~~l~~~~~~~~~g~i~~~ 63 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGK-------------------QYLETHAFEGPKGFIANS 63 (745)
T ss_pred eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCc-------------------ccccceecccCcceeecc
Confidence 3556788999999998887755 7789999999999997541 23445667788887766
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+++-+...++|++|+.|++|++|.+..... ...+.+|.+.|.++....++. ++|||.|.++++|-+.. +..
T Consensus 64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P----~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~---l~~ 134 (745)
T KOG0301|consen 64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEP----LYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE---LVY 134 (745)
T ss_pred ceeccccCcceEeecccceEEEEecCCCCc----hhhhhccccceeeeecCCcCc--eEecccccceEEecchh---hhc
Confidence 888775556899999999999999876544 467899999999999776664 99999999999997764 456
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|...|.++..-|.+ .++||+.|.+|++|.-. . .+.+|.+|..-|+.+++-|. ..|++++.||.|++
T Consensus 135 ~l~gH~asVWAv~~l~e~--~~vTgsaDKtIklWk~~--~----~l~tf~gHtD~VRgL~vl~~--~~flScsNDg~Ir~ 204 (745)
T KOG0301|consen 135 SLQGHTASVWAVASLPEN--TYVTGSADKTIKLWKGG--T----LLKTFSGHTDCVRGLAVLDD--SHFLSCSNDGSIRL 204 (745)
T ss_pred ccCCcchheeeeeecCCC--cEEeccCcceeeeccCC--c----hhhhhccchhheeeeEEecC--CCeEeecCCceEEE
Confidence 689999999999999976 89999999999999763 2 78899999999999999983 57999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|++..+ .++..|++..-|.+++..+.+ .+++|+++|+ ++||+-...
T Consensus 205 w~~~ge-------------------------~l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~e~ 251 (745)
T KOG0301|consen 205 WDLDGE-------------------------VLLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKDEC 251 (745)
T ss_pred EeccCc-------------------------eeeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecCce
Confidence 999544 344445444569999955555 5999999999 999987643
No 121
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.91 E-value=9.7e-24 Score=198.74 Aligned_cols=211 Identities=17% Similarity=0.244 Sum_probs=169.6
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE--ecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK--FGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~ 241 (479)
...+|...++|.+|+|.....+.|++.||+++|||++...... +.+.+ ..+..-+++.++|
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~-----------------qVik~k~~~g~Rv~~tsC~~ 325 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQL-----------------QVIKTKPAGGKRVPVTSCAW 325 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhe-----------------eEEeeccCCCcccCceeeec
Confidence 3468999999999999998899999999999999998843211 11111 1133448899999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCC--cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA--SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+++++ .||+|..||.|.+|+...... ......-.+|.. .|+||.||++|+ +|++-+.|+++++||+|..+.++..
T Consensus 326 nrdg~-~iAagc~DGSIQ~W~~~~~~v-~p~~~vk~AH~~g~~Itsi~FS~dg~-~LlSRg~D~tLKvWDLrq~kkpL~~ 402 (641)
T KOG0772|consen 326 NRDGK-LIAAGCLDGSIQIWDKGSRTV-RPVMKVKDAHLPGQDITSISFSYDGN-YLLSRGFDDTLKVWDLRQFKKPLNV 402 (641)
T ss_pred CCCcc-hhhhcccCCceeeeecCCccc-ccceEeeeccCCCCceeEEEeccccc-hhhhccCCCceeeeeccccccchhh
Confidence 99998 899999999999999844322 211233456776 899999999999 9999999999999999999877766
Q ss_pred EecC--CCCEEEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 320 FKAH--NADVNVISWNRLASCLLASGSD------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 320 ~~~h--~~~v~~l~~~p~~~~~l~sgs~------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
..+- ..+-+.++|+|+. .+|++|.. .|.+.+||.++.. .+..+......|..+.|+|.- +.|++|+
T Consensus 403 ~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d----~v~ki~i~~aSvv~~~WhpkL-NQi~~gs 476 (641)
T KOG0772|consen 403 RTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLD----TVYKIDISTASVVRCLWHPKL-NQIFAGS 476 (641)
T ss_pred hcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEecccee----eEEEecCCCceEEEEeecchh-hheeeec
Confidence 5432 2345778999999 89999864 4789999999998 788888889999999999966 7788888
Q ss_pred CCCcEEEEE
Q 039302 392 ADNQLTIWD 400 (479)
Q Consensus 392 ~Dg~I~iwd 400 (479)
.||.++||-
T Consensus 477 gdG~~~vyY 485 (641)
T KOG0772|consen 477 GDGTAHVYY 485 (641)
T ss_pred CCCceEEEE
Confidence 899998764
No 122
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=5.4e-24 Score=189.79 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=166.2
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc----CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEE
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV----DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIA 306 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~----~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~ 306 (479)
+....+-|..|+|++. +|++|+.||.|-+||..+++...- ....|.-+..+|.|+.|+.+.. .+|+|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE-MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE-MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH-HhhccCcCCcEE
Confidence 4456788999999998 999999999999999987643111 1123556789999999999998 999999999999
Q ss_pred EEEcCCCCceeeEE-ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCC
Q 039302 307 IWDTRVGKSALMSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 307 iwD~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 385 (479)
+|.++++. |+..+ .+|...|+|++|+.++ ..+++++.|.+++|.-+.+++ ++..|++|+..|+.+.|.+++ .
T Consensus 289 vWri~tG~-ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK----~LKEfrGHsSyvn~a~ft~dG-~ 361 (508)
T KOG0275|consen 289 VWRIETGQ-CLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGK----CLKEFRGHSSYVNEATFTDDG-H 361 (508)
T ss_pred EEEEecch-HHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccch----hHHHhcCccccccceEEcCCC-C
Confidence 99999996 77777 5999999999999999 889999999999999999998 899999999999999999955 9
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceE
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNI 464 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~i 464 (479)
.++++|.||+|++|+..+..+... | .......+|+.+..-|..|-.++.|...+ +.|
T Consensus 362 ~iisaSsDgtvkvW~~KtteC~~T---f-------------------k~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~i 419 (508)
T KOG0275|consen 362 HIISASSDGTVKVWHGKTTECLST---F-------------------KPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYI 419 (508)
T ss_pred eEEEecCCccEEEecCcchhhhhh---c-------------------cCCCCcccceeEEEcCCCCceEEEEcCCCeEEE
Confidence 999999999999999998765321 1 11111225777777776665555555544 544
Q ss_pred Eee
Q 039302 465 LMP 467 (479)
Q Consensus 465 w~~ 467 (479)
.++
T Consensus 420 mn~ 422 (508)
T KOG0275|consen 420 MNM 422 (508)
T ss_pred Eec
Confidence 443
No 123
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.90 E-value=1.4e-23 Score=192.81 Aligned_cols=247 Identities=19% Similarity=0.261 Sum_probs=200.6
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+-.|.++|+.+.|.++. ..|+||+.|..|++|++... ....+.++.|..+.|++++|.
T Consensus 169 ~~ld~h~gev~~v~~l~~s-dtlatgg~Dr~Ik~W~v~~~-------------------k~~~~~tLaGs~g~it~~d~d 228 (459)
T KOG0288|consen 169 FVLDAHEGEVHDVEFLRNS-DTLATGGSDRIIKLWNVLGE-------------------KSELISTLAGSLGNITSIDFD 228 (459)
T ss_pred hhhhccccccceeEEccCc-chhhhcchhhhhhhhhcccc-------------------hhhhhhhhhccCCCcceeeec
Confidence 4567899999999999986 58899999999999999873 234567788888999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+++. .+++++.|+.+++|++..... ..++.+|+..|+++.|..... .+++|+.|.+|++||+.... |..++..
T Consensus 229 ~~~~-~~iAas~d~~~r~Wnvd~~r~----~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~-C~kt~l~ 301 (459)
T KOG0288|consen 229 SDNK-HVIAASNDKNLRLWNVDSLRL----RHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAY-CSKTVLP 301 (459)
T ss_pred CCCc-eEEeecCCCceeeeeccchhh----hhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhh-eeccccc
Confidence 9998 888999999999999987544 366889999999999988776 59999999999999999864 5555432
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...++.|..++ ..+++|-.|+.|++||+|... +......+. .|+++..++++ ..|.+++.|.++.+.|++
T Consensus 302 -~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~----~~~sv~~gg-~vtSl~ls~~g-~~lLsssRDdtl~viDlR 371 (459)
T KOG0288|consen 302 -GSQCNDIVCSI---SDVISGHFDKKVRFWDIRSAD----KTRSVPLGG-RVTSLDLSMDG-LELLSSSRDDTLKVIDLR 371 (459)
T ss_pred -cccccceEecc---eeeeecccccceEEEeccCCc----eeeEeecCc-ceeeEeeccCC-eEEeeecCCCceeeeecc
Confidence 34566677663 679999999999999999988 788888765 99999999955 888888999999999999
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecC---CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG---QKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g---~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+... ...|.-.| ....+.+.|+|.+. ++++|+.|| |+||.+...
T Consensus 372 t~eI-----------------------~~~~sA~g~k~asDwtrvvfSpd~~-YvaAGS~dgsv~iW~v~tg 419 (459)
T KOG0288|consen 372 TKEI-----------------------RQTFSAEGFKCASDWTRVVFSPDGS-YVAAGSADGSVYIWSVFTG 419 (459)
T ss_pred cccE-----------------------EEEeeccccccccccceeEECCCCc-eeeeccCCCcEEEEEccCc
Confidence 8742 11111111 13599999999997 566666666 999988654
No 124
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=4.1e-22 Score=177.66 Aligned_cols=283 Identities=16% Similarity=0.179 Sum_probs=197.1
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.|.....+.+|.+.|++++|+.+| ..|||++.|+.|+||++....+.- .+++..- -.-+--+
T Consensus 75 Hpl~~~~LKgH~~~vt~~~FsSdG-K~lat~~~Dr~Ir~w~~~DF~~~e----------------Hr~~R~n-ve~dhpT 136 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFSSDG-KKLATISGDRSIRLWDVRDFENKE----------------HRCIRQN-VEYDHPT 136 (420)
T ss_pred cchhhhhhhccCCceeeeEEcCCC-ceeEEEeCCceEEEEecchhhhhh----------------hhHhhcc-ccCCCce
Confidence 455556788999999999999999 789999999999999998743211 1111110 1112457
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc--cccCCC------CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT--WNVDPN------PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~--~~~~~~------~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
.+.|+|+-...++++-...++++|.+..... ...... .-..|.-.|.++-...++. ++++++.|..|.||+
T Consensus 137 ~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~ 215 (420)
T KOG2096|consen 137 RVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWD 215 (420)
T ss_pred EEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEe
Confidence 8999999987778887778999998754321 110001 1123566777777777777 999999999999999
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----CceEEEeecCCCCeEEEEEeCCCCC
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----DSVVAHFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----~~~~~~~~~h~~~I~~v~~sp~~~~ 385 (479)
++ ++ .+..+......-...+.+|+| .+||+++----|++|.+--.+.. ...+..+++|...|+.++|+|+. .
T Consensus 216 lk-Gq-~L~~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S-~ 291 (420)
T KOG2096|consen 216 LK-GQ-LLQSIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSS-T 291 (420)
T ss_pred cC-Cc-eeeeeccccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCc-c
Confidence 99 43 667776666667778999999 99999999999999997544321 23467789999999999999955 9
Q ss_pred EEEEEeCCCcEEEEECCCCC----ChHHHHHHhhhccc--ccC-----CC--------------------CCCCCceEEe
Q 039302 386 TLAVSSADNQLTIWDLSLEK----DEEEEAEFKAKTRE--QVN-----AP--------------------EDLPPQLLFI 434 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~----~~~~~~~~~~~~~~--~~~-----~~--------------------~~~p~~l~~~ 434 (479)
.+++.|.||+++|||+.... ++.....+...... ... .+ ...-+++-..
T Consensus 292 r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~ 371 (420)
T KOG2096|consen 292 RAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI 371 (420)
T ss_pred eeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh
Confidence 99999999999999987642 21111111000000 000 00 0111122222
Q ss_pred ecCCCCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 435 HQGQKDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 435 h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
|. ..|.+++|+++|. .++++++.-+++++
T Consensus 372 h~--~~Is~is~~~~g~-~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 372 HS--TTISSISYSSDGK-YIATCGDRYVRVIR 400 (420)
T ss_pred hc--CceeeEEecCCCc-EEeeecceeeeeec
Confidence 32 4699999999995 88999988788876
No 125
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.90 E-value=7.4e-22 Score=183.83 Aligned_cols=255 Identities=14% Similarity=0.218 Sum_probs=189.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+...+|.++|+++.|+|.+...+.+.|.||+|++-|++... ...+..+..-......++|+
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i-------------------~e~v~s~~~d~~~fs~~d~~ 288 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNI-------------------SEEVLSLDTDNIWFSSLDFS 288 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecchh-------------------hHHHhhcCccceeeeecccc
Confidence 46889999999999999987777788999999999998732 23333443344567788999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMS 319 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~ 319 (479)
.... .++.|+.=|.+.+||+++.+... ..+.-|...|+.|+++|..+.+||+||.|++++|||+|.... +...
T Consensus 289 ~e~~-~vl~~~~~G~f~~iD~R~~~s~~---~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~ls 364 (498)
T KOG4328|consen 289 AESR-SVLFGDNVGNFNVIDLRTDGSEY---ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLS 364 (498)
T ss_pred CCCc-cEEEeecccceEEEEeecCCccc---hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCccee
Confidence 8887 78888888899999998876522 345668889999999999999999999999999999997632 3456
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---CCCC--eEEEEEeCCCCCEEEEEeCCC
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---HKHP--VTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---h~~~--I~~v~~sp~~~~~las~s~Dg 394 (479)
...|...|++..|+|.++. |+|-+.|..|+|||..-......+..++.. +..+ ....+|.|+. .+|++|-.-.
T Consensus 365 t~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~-~li~vg~~~r 442 (498)
T KOG4328|consen 365 TLPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDY-NLIVVGRYPR 442 (498)
T ss_pred cccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCc-cEEEEeccCc
Confidence 6789999999999999966 899999999999998522211114444432 2222 2356899955 9999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-Ceee-EEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKE-LHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~-v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
.|-|+|-..++ .+...|.... .|.+ .+|||....+++.++..| |.||.
T Consensus 443 ~IDv~~~~~~q------------------------~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 443 PIDVFDGNGGQ------------------------MVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFT 493 (498)
T ss_pred ceeEEcCCCCE------------------------EeeeccCccccccccceeecccccceeccCCccceEEEEe
Confidence 99999987763 1222243222 3433 589999864555555555 55554
No 126
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.90 E-value=4.9e-23 Score=177.73 Aligned_cols=206 Identities=17% Similarity=0.298 Sum_probs=175.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
..+.|+.-|.+++|+.+. +.|+||+.+..++|||++. ...+...+.+|.+.|..+-|+.
T Consensus 95 hsf~hkhivk~~af~~ds-~~lltgg~ekllrvfdln~--------------------p~App~E~~ghtg~Ir~v~wc~ 153 (334)
T KOG0278|consen 95 HSFEHKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNR--------------------PKAPPKEISGHTGGIRTVLWCH 153 (334)
T ss_pred hhhhhhheeeeEEecccc-hhhhccchHHHhhhhhccC--------------------CCCCchhhcCCCCcceeEEEec
Confidence 467899999999999988 6777999999999999998 3566677899999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
... .|+|++.|++|++||.+++.... .+ ....+|+++..+++|. +++-...+.|.+||..+.. .+..+. .
T Consensus 154 eD~-~iLSSadd~tVRLWD~rTgt~v~----sL-~~~s~VtSlEvs~dG~--ilTia~gssV~Fwdaksf~-~lKs~k-~ 223 (334)
T KOG0278|consen 154 EDK-CILSSADDKTVRLWDHRTGTEVQ----SL-EFNSPVTSLEVSQDGR--ILTIAYGSSVKFWDAKSFG-LLKSYK-M 223 (334)
T ss_pred cCc-eEEeeccCCceEEEEeccCcEEE----EE-ecCCCCcceeeccCCC--EEEEecCceeEEecccccc-ceeecc-C
Confidence 887 89998999999999999875522 12 2356899999999997 5566667899999999875 555554 3
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...|.+.+++|+. .++++|+.|..++.||..++. .+..+ ++|.++|.||.|+|++ .+.|+||+||+|+||.+.
T Consensus 224 P~nV~SASL~P~k-~~fVaGged~~~~kfDy~Tge----Ei~~~nkgh~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 224 PCNVESASLHPKK-EFFVAGGEDFKVYKFDYNTGE----EIGSYNKGHFGPVHCVRFSPDG-ELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ccccccccccCCC-ceEEecCcceEEEEEeccCCc----eeeecccCCCCceEEEEECCCC-ceeeccCCCceEEEEEec
Confidence 5679999999998 899999999999999999998 45554 8999999999999955 999999999999999998
Q ss_pred CCCC
Q 039302 403 LEKD 406 (479)
Q Consensus 403 ~~~~ 406 (479)
..+.
T Consensus 298 ~~~~ 301 (334)
T KOG0278|consen 298 PGKT 301 (334)
T ss_pred CCCc
Confidence 7753
No 127
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=5.8e-24 Score=207.63 Aligned_cols=202 Identities=22% Similarity=0.401 Sum_probs=180.4
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+|.-...+.+|.++|-+|+|.+.. .+|++|+.+|+|++||+.. .+.+.++.+|...+.
T Consensus 59 kp~~i~S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDlee---------------------Ak~vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 59 KPNAITSLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEE---------------------AKIVRTLTGHLLNIT 116 (825)
T ss_pred CCchhheeeccCCcceeeecCcch-hhhcccccCCceeeeehhh---------------------hhhhhhhhccccCcc
Confidence 454445689999999999999988 8999999999999999997 677789999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
.++|+|.+. ++++|+.|+.+++||++..+. ...+.+|...|..+.|+|+|+ ++++++.|.+++|||.+.++ .+
T Consensus 117 sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc----~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk-~~ 189 (825)
T KOG0267|consen 117 SVDFHPYGE-FFASGSTDTDLKIWDIRKKGC----SHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGK-LS 189 (825)
T ss_pred eeeeccceE-EeccccccccceehhhhccCc----eeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccc-cc
Confidence 999999998 999999999999999986555 356888999999999999999 99999999999999999986 77
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
..|..|...+.++.|+|.. .++++|+.|++|++||+++.. .+.....-...|.+..|+|++ ..+++|....
T Consensus 190 ~ef~~~e~~v~sle~hp~e-~Lla~Gs~d~tv~f~dletfe----~I~s~~~~~~~v~~~~fn~~~-~~~~~G~q~s 260 (825)
T KOG0267|consen 190 KEFKSHEGKVQSLEFHPLE-VLLAPGSSDRTVRFWDLETFE----VISSGKPETDGVRSLAFNPDG-KIVLSGEQIS 260 (825)
T ss_pred cccccccccccccccCchh-hhhccCCCCceeeeeccceeE----EeeccCCccCCceeeeecCCc-eeeecCchhh
Confidence 7889999999999999998 999999999999999999887 677777778899999999965 7777765543
No 128
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=1.7e-20 Score=186.32 Aligned_cols=261 Identities=19% Similarity=0.256 Sum_probs=205.8
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
...+.+.+.++...|+++.-+|-= .++|.|..+|+|.|+++.. .+.+.+|+.-.+.|+
T Consensus 191 t~K~v~~f~~~~s~IT~ieqsPaL-DVVaiG~~~G~ViifNlK~---------------------dkil~sFk~d~g~Vt 248 (910)
T KOG1539|consen 191 TGKVVYTFQEFFSRITAIEQSPAL-DVVAIGLENGTVIIFNLKF---------------------DKILMSFKQDWGRVT 248 (910)
T ss_pred cCcEEEEecccccceeEeccCCcc-eEEEEeccCceEEEEEccc---------------------CcEEEEEEcccccee
Confidence 445667889999999999999977 7999999999999999998 677888875568999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc-------------------------------------------------
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT------------------------------------------------- 268 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~------------------------------------------------- 268 (479)
.++|..+|...|++|+..|.+.+||++....
T Consensus 249 slSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR 328 (910)
T KOG1539|consen 249 SLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLR 328 (910)
T ss_pred EEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchhee
Confidence 9999999988899999889999999865320
Q ss_pred --------------------------------------------------------------------------------
Q 039302 269 -------------------------------------------------------------------------------- 268 (479)
Q Consensus 269 -------------------------------------------------------------------------------- 268 (479)
T Consensus 329 ~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE 408 (910)
T KOG1539|consen 329 SRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE 408 (910)
T ss_pred eccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh
Confidence
Q ss_pred ------------------ccc----------CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 269 ------------------WNV----------DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 269 ------------------~~~----------~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|.. ....++.....+++++.++.|+ +.+.|+..|+|-+|++.++- ...++
T Consensus 409 ~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGN-F~~IG~S~G~Id~fNmQSGi-~r~sf 486 (910)
T KOG1539|consen 409 KEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGN-FVFIGYSKGTIDRFNMQSGI-HRKSF 486 (910)
T ss_pred hhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCc-eEEEeccCCeEEEEEcccCe-eeccc
Confidence 000 0000000124577888888887 78888899999999999984 44555
Q ss_pred ---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-------------------------------------
Q 039302 321 ---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG------------------------------------- 360 (479)
Q Consensus 321 ---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~------------------------------------- 360 (479)
.+|...|+.++....+ ..+++++.+|.+++||.......
T Consensus 487 ~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t 565 (910)
T KOG1539|consen 487 GDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVT 565 (910)
T ss_pred ccCccccCceeEEEecCCC-ceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchh
Confidence 5899999999999888 89999999999999998765410
Q ss_pred CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCC
Q 039302 361 DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKD 440 (479)
Q Consensus 361 ~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~ 440 (479)
...++.|.+|++.|+++.|||++ ++|++++.|++|++||+.++. ++-.-.-..+
T Consensus 566 ~kvvR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~-------------------------lID~~~vd~~ 619 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGT-------------------------LIDGLLVDSP 619 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcc-------------------------eeeeEecCCc
Confidence 12455677899999999999965 999999999999999999884 3333333457
Q ss_pred eeeEEEeCCCCcEEEEEcCC--CceEEeeecc
Q 039302 441 LKELHWHTQVPGMIVSTAAD--GFNILMPSNI 470 (479)
Q Consensus 441 V~~v~w~p~~~~ll~s~~~d--gi~iw~~~~~ 470 (479)
++.+.|+|++. +||++..| ||.+|--.++
T Consensus 620 ~~sls~SPngD-~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 620 CTSLSFSPNGD-FLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred ceeeEECCCCC-EEEEEEecCceEEEEEchhH
Confidence 99999999996 67776666 4999976555
No 129
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-22 Score=189.06 Aligned_cols=246 Identities=18% Similarity=0.231 Sum_probs=194.9
Q ss_pred cCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecC
Q 039302 89 EFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAH 168 (479)
Q Consensus 89 ~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H 168 (479)
.+|.-.|+++|| ..+.||+|.++ ...+...+.+|
T Consensus 89 s~n~G~~l~ag~-----i~g~lYlWels-----------------------------------------sG~LL~v~~aH 122 (476)
T KOG0646|consen 89 SSNLGYFLLAGT-----ISGNLYLWELS-----------------------------------------SGILLNVLSAH 122 (476)
T ss_pred cCCCceEEEeec-----ccCcEEEEEec-----------------------------------------cccHHHHHHhh
Confidence 456667888875 67789999995 22344566899
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC-C
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP-G 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-~ 247 (479)
-..|+|++|+-++ .+|+|||.||.|.+|.+.......... ..+|+..|..|+-+|+++...+-+. .
T Consensus 123 YQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~~~------------~~~p~~~f~~HtlsITDl~ig~Gg~~~ 189 (476)
T KOG0646|consen 123 YQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADNDH------------SVKPLHIFSDHTLSITDLQIGSGGTNA 189 (476)
T ss_pred ccceeEEEEeCCC-cEEEecCCCccEEEEEEEeecccccCC------------CccceeeeccCcceeEEEEecCCCccc
Confidence 9999999999999 688899999999999987743332211 3688999999999999999887643 3
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-------------
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------------- 314 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------------- 314 (479)
+|+|++.|.+|++||+..+.... ......++.+++.+|.+. .+..|+.+|.|.+.++....
T Consensus 190 rl~TaS~D~t~k~wdlS~g~LLl-----ti~fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~ 263 (476)
T KOG0646|consen 190 RLYTASEDRTIKLWDLSLGVLLL-----TITFPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHE 263 (476)
T ss_pred eEEEecCCceEEEEEeccceeeE-----EEecCCcceeEEEccccc-EEEecCCcceEEeeehhcCCccccccccccccc
Confidence 99999999999999998764422 112356899999999998 99999999999998876542
Q ss_pred --ceeeEEecCCC--CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 315 --SALMSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 315 --~~~~~~~~h~~--~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
..+..+.+|.+ .|+|++.+-++ .+|++|+.||.|+|||+.+.+ +++++....++|+.+.+.|-....+..-
T Consensus 264 ~~t~~~~~~Gh~~~~~ITcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q----~iRtl~~~kgpVtnL~i~~~~~~~~l~~ 338 (476)
T KOG0646|consen 264 ENTQINVLVGHENESAITCLAISTDG-TLLLSGDEDGKVCVWDIYSKQ----CIRTLQTSKGPVTNLQINPLERGIILFE 338 (476)
T ss_pred ccceeeeeccccCCcceeEEEEecCc-cEEEeeCCCCCEEEEecchHH----HHHHHhhhccccceeEeeccccceeccc
Confidence 13445678887 99999999999 999999999999999999888 7888876789999999988654444444
Q ss_pred eCCCcEEEEECCCC
Q 039302 391 SADNQLTIWDLSLE 404 (479)
Q Consensus 391 s~Dg~I~iwdl~~~ 404 (479)
+....+..|++...
T Consensus 339 ~~~ps~~~~~lkr~ 352 (476)
T KOG0646|consen 339 HKQPSLPNPHLKRM 352 (476)
T ss_pred ccCccCCchHhhcc
Confidence 44556777776654
No 130
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=1.4e-22 Score=183.57 Aligned_cols=250 Identities=18% Similarity=0.209 Sum_probs=188.0
Q ss_pred ecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEec
Q 039302 100 SQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMS 179 (479)
Q Consensus 100 t~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p 179 (479)
|-++|+-++.|.||++++ ..+...+..|.|.|+.|++..
T Consensus 81 ~~aSGs~DG~VkiWnlsq-----------------------------------------R~~~~~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQ-----------------------------------------RECIRTFKAHEGLVRGICVTQ 119 (433)
T ss_pred hhhccccCceEEEEehhh-----------------------------------------hhhhheeecccCceeeEEecc
Confidence 334678999999999852 223346789999999999987
Q ss_pred CCCcEEEEEeCCceEEEEeCCCCcccc----------cccccc---cCCC----CCccccCCCcEEecCCCCceEEEEeC
Q 039302 180 QNPHICASWADTGHVQVWDFRSHLNAL----------AESETV---AGHG----APQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 180 ~~~~~lat~s~dg~V~iwd~~~~~~~~----------~~~~~~---~~~~----~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.-++|++.|.+|+.|-+....... ...... +..+ ........|+..+.--.+.|.++.|+
T Consensus 120 ---~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfN 196 (433)
T KOG0268|consen 120 ---TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFN 196 (433)
T ss_pred ---cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecC
Confidence 346688999999999876521100 000000 0000 00112345777777667789999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|.....|++|..|+.|.|||+++....... .-+..-+.|+|+| +...|++++.|..+..||+|....++.....
T Consensus 197 pvETsILas~~sDrsIvLyD~R~~~Pl~KV-----i~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~d 270 (433)
T KOG0268|consen 197 PVETSILASCASDRSIVLYDLRQASPLKKV-----ILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKD 270 (433)
T ss_pred CCcchheeeeccCCceEEEecccCCcccee-----eeeccccceecCc-cccceeeccccccceehhhhhhcccchhhcc
Confidence 999889999999999999999886542211 1234567899999 5568999999999999999999889999999
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|.+.|..++|+|.| .-|++||.|.+|+||..+.+... -+.. ..--..|.+|.|+-+. .++++||.|+.|++|...
T Consensus 271 hvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SR--diYh-tkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 271 HVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSR--DIYH-TKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cceeEEEeccCCCc-chhccccccceEEEeecCCCcch--hhhh-HhhhheeeEEEEeccc-cEEEecCCCcceeeeecc
Confidence 99999999999999 89999999999999999877631 1111 0123568999999855 999999999999999876
Q ss_pred CC
Q 039302 403 LE 404 (479)
Q Consensus 403 ~~ 404 (479)
..
T Consensus 346 As 347 (433)
T KOG0268|consen 346 AS 347 (433)
T ss_pred hh
Confidence 54
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=3.3e-21 Score=170.18 Aligned_cols=245 Identities=21% Similarity=0.330 Sum_probs=181.4
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..+|+-.|..+.|.|.+..++.++|.|.+++|||.++ .+....|+ -.+.|+.-+|+|-
T Consensus 97 ~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT---------------------lQ~a~~F~-me~~VYshamSp~ 154 (397)
T KOG4283|consen 97 ENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT---------------------LQEAVDFK-MEGKVYSHAMSPM 154 (397)
T ss_pred CccceeeeeeeEEeeecCceeecccccceEEEeeccc---------------------ceeeEEee-cCceeehhhcChh
Confidence 3578899999999998888999999999999999998 44445554 3568999999987
Q ss_pred CCC--eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE---
Q 039302 245 APG--RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--- 319 (479)
Q Consensus 245 ~~~--~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~--- 319 (479)
... ++|+|..+-.|++.|+..+.. ...+.+|.+.|.++.|+|....+|++|+.||.|++||+|....+...
T Consensus 155 a~sHcLiA~gtr~~~VrLCDi~SGs~----sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~ 230 (397)
T KOG4283|consen 155 AMSHCLIAAGTRDVQVRLCDIASGSF----SHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQ 230 (397)
T ss_pred hhcceEEEEecCCCcEEEEeccCCcc----eeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeec
Confidence 542 788889899999999988755 46789999999999999999989999999999999999976323322
Q ss_pred -----------EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCC----CeEEEEEeCC
Q 039302 320 -----------FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKH----PVTSIEWSPH 382 (479)
Q Consensus 320 -----------~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~----~I~~v~~sp~ 382 (479)
-.+|.+.|+.++|..++ .++++++.|..+++|+..++.. .+..+-. |.. .+. +. +-
T Consensus 231 hn~k~~p~~~~n~ah~gkvngla~tSd~-~~l~~~gtd~r~r~wn~~~G~n---tl~~~g~~~~n~~~~~~~~-~~-~~- 303 (397)
T KOG4283|consen 231 HNTKRPPILKTNTAHYGKVNGLAWTSDA-RYLASCGTDDRIRVWNMESGRN---TLREFGPIIHNQTTSFAVH-IQ-SM- 303 (397)
T ss_pred ccCccCccccccccccceeeeeeecccc-hhhhhccCccceEEeecccCcc---cccccccccccccccceEE-Ee-ec-
Confidence 34677899999999999 8999999999999999988764 2221110 111 111 22 22
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
+...++---.++.+.++++-.+... .++..| -+.|.+.++-|+-. -+.++..|+
T Consensus 304 ~s~vfv~~p~~~~lall~~~sgs~i----------------------r~l~~h--~k~i~c~~~~~~fq-~~~tg~~d~n 358 (397)
T KOG4283|consen 304 DSDVFVLFPNDGSLALLNLLEGSFV----------------------RRLSTH--LKRINCAAYRPDFE-QCFTGDMNGN 358 (397)
T ss_pred ccceEEEEecCCeEEEEEccCceEE----------------------Eeeecc--cceeeEEeecCchh-hhhccccCCc
Confidence 1234444445577777777655311 334444 25688888888875 455666666
Q ss_pred ceEEee
Q 039302 462 FNILMP 467 (479)
Q Consensus 462 i~iw~~ 467 (479)
+..|-+
T Consensus 359 i~~w~p 364 (397)
T KOG4283|consen 359 IYMWSP 364 (397)
T ss_pred cccccc
Confidence 888877
No 132
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.1e-21 Score=172.04 Aligned_cols=224 Identities=22% Similarity=0.341 Sum_probs=165.3
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
-.+.|.+|+|||...++|+.|+-||+|++|+++..+... .+....|.++|.+++|+.+|. .+++|+.|+.+++||+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~--~ka~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k~wDL~ 102 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLV--PKAQQSHDGPVLDVCWSDDGS-KVFSGGCDKQAKLWDLA 102 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCccc--chhhhccCCCeEEEEEccCCc-eEEeeccCCceEEEEcc
Confidence 456899999999766688899999999999998754432 255678999999999999997 89999999999999999
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
+++ +..+..|..+|.++.|-+.. ...|+|||.|.+|+.||.|... ++.++.- ...++++..-. .+++.+
T Consensus 103 S~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~----pv~t~~L-PeRvYa~Dv~~---pm~vVa 172 (347)
T KOG0647|consen 103 SGQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN----PVATLQL-PERVYAADVLY---PMAVVA 172 (347)
T ss_pred CCC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC----eeeeeec-cceeeehhccC---ceeEEE
Confidence 985 67788999999999997655 1489999999999999999887 7887764 56777776642 678888
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhccc------------c------------cCCCCCCCCceEEeecCC----C---
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTRE------------Q------------VNAPEDLPPQLLFIHQGQ----K--- 439 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~------------~------------~~~~~~~p~~l~~~h~g~----~--- 439 (479)
..++.|.+|+|.....+........+.+. . .........-.+.-|... .
T Consensus 173 ta~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VY 252 (347)
T KOG0647|consen 173 TAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVY 252 (347)
T ss_pred ecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceE
Confidence 89999999999876543222111111000 0 000000111223335421 1
Q ss_pred CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 440 DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 440 ~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.|++|+|||.. +.|++.|.|| +.+|+-..
T Consensus 253 aVNsi~FhP~h-gtlvTaGsDGtf~FWDkda 282 (347)
T KOG0647|consen 253 AVNSIAFHPVH-GTLVTAGSDGTFSFWDKDA 282 (347)
T ss_pred EecceEeeccc-ceEEEecCCceEEEecchh
Confidence 48899999977 5778877787 99997543
No 133
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=4.2e-21 Score=171.14 Aligned_cols=259 Identities=20% Similarity=0.266 Sum_probs=171.6
Q ss_pred EEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecC
Q 039302 185 CASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPA 264 (479)
Q Consensus 185 lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~ 264 (479)
|+.|+....|.=+++........ ........+++.+..|.+.+++++.+ ++ ++|||+.|-+|+|||+.
T Consensus 4 iIvGtYE~~i~Gf~l~~~~~~~~---------~s~~~~l~~lF~~~aH~~sitavAVs--~~-~~aSGssDetI~IYDm~ 71 (362)
T KOG0294|consen 4 IIVGTYEHVILGFKLDPEPKGCT---------DSVKPTLKPLFAFSAHAGSITALAVS--GP-YVASGSSDETIHIYDMR 71 (362)
T ss_pred EEEeeeeeEEEEEEeccCccccc---------cccceeeeccccccccccceeEEEec--ce-eEeccCCCCcEEEEecc
Confidence 45677777777777655321100 00111356688999999999999996 45 99999999999999998
Q ss_pred CCCccccCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEE
Q 039302 265 SDATWNVDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASG 343 (479)
Q Consensus 265 ~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sg 343 (479)
+... ...+..|.+.|+++.|.+.- .+.|++|+.||.|.+|+.... .++.++++|...|+.++.+|.+ .+-++.
T Consensus 72 k~~q----lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~-KLALsV 145 (362)
T KOG0294|consen 72 KRKQ----LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSG-KLALSV 145 (362)
T ss_pred chhh----hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCC-ceEEEE
Confidence 7544 35677899999999998764 347999999999999999988 4889999999999999999999 899999
Q ss_pred eCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHh----hh---
Q 039302 344 SDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFK----AK--- 416 (479)
Q Consensus 344 s~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~----~~--- 416 (479)
+.|+.+++|++-.++. ..+..+. ..-+.|.|+|.+ .+|+.++.+ .|-||.+....--.+...-+ ..
T Consensus 146 g~D~~lr~WNLV~Gr~--a~v~~L~---~~at~v~w~~~G-d~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~l~ 218 (362)
T KOG0294|consen 146 GGDQVLRTWNLVRGRV--AFVLNLK---NKATLVSWSPQG-DHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATFLD 218 (362)
T ss_pred cCCceeeeehhhcCcc--ceeeccC---CcceeeEEcCCC-CEEEEEecc-EEEEEecccHhHhhhhhccccceeeeecC
Confidence 9999999999988763 1122221 112335666543 333333322 34444444322110000000 00
Q ss_pred --------c---ccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEcCCC-ceEEeeecc
Q 039302 417 --------T---REQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 417 --------~---~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
. ..........|+..+..|. ..|.++.+- .....+|++++.|| |+||++..-
T Consensus 219 ~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 219 GSELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred CceEEEecCCceEEEeccCCCccceeeecch--hheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 0 0000011134445555565 679998843 22336899999999 999998654
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=2.9e-22 Score=188.23 Aligned_cols=248 Identities=22% Similarity=0.301 Sum_probs=196.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC--CCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH--KDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~ 241 (479)
....|-.-|.++.++... ..+.||+ .|.|+|||+....+ ..|+..+... ..-|..+..
T Consensus 414 ~tL~HGEvVcAvtIS~~t-rhVyTgG-kgcVKVWdis~pg~------------------k~PvsqLdcl~rdnyiRSckL 473 (705)
T KOG0639|consen 414 NTLAHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISQPGN------------------KSPVSQLDCLNRDNYIRSCKL 473 (705)
T ss_pred hhhccCcEEEEEEecCCc-ceeEecC-CCeEEEeeccCCCC------------------CCccccccccCcccceeeeEe
Confidence 345687888888888877 6677855 57899999987422 3344444332 347889999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
.|++. .|++|+.-.++.|||+....... ...+....-.+..++.+|+.+ +.++|..||.|.|||++... .+..+.
T Consensus 474 ~pdgr-tLivGGeastlsiWDLAapTpri--kaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~-~Vrqfq 548 (705)
T KOG0639|consen 474 LPDGR-TLIVGGEASTLSIWDLAAPTPRI--KAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT-LVRQFQ 548 (705)
T ss_pred cCCCc-eEEeccccceeeeeeccCCCcch--hhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce-eeeccc
Confidence 99998 99999999999999997754322 223333345678899999998 88888889999999999864 788999
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...+.||..+++| ..|-||+-|++|+.||+|.+.. +.... ....|.++..+|++ .+|+.|-+.+.|.|-..
T Consensus 549 GhtDGascIdis~dG-tklWTGGlDntvRcWDlregrq----lqqhd-F~SQIfSLg~cP~~-dWlavGMens~vevlh~ 621 (705)
T KOG0639|consen 549 GHTDGASCIDISKDG-TKLWTGGLDNTVRCWDLREGRQ----LQQHD-FSSQIFSLGYCPTG-DWLAVGMENSNVEVLHT 621 (705)
T ss_pred CCCCCceeEEecCCC-ceeecCCCccceeehhhhhhhh----hhhhh-hhhhheecccCCCc-cceeeecccCcEEEEec
Confidence 999999999999999 8999999999999999998873 32222 35689999999976 99999999999888777
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+.. +....|.+.+-|.++.|.+.|. .++|++.|+ ++.|++.-
T Consensus 622 skp-------------------------~kyqlhlheScVLSlKFa~cGk-wfvStGkDnlLnawrtPy 664 (705)
T KOG0639|consen 622 SKP-------------------------EKYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPY 664 (705)
T ss_pred CCc-------------------------cceeecccccEEEEEEecccCc-eeeecCchhhhhhccCcc
Confidence 655 4466677667799999999997 666777776 89998754
No 135
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.89 E-value=7.5e-22 Score=185.42 Aligned_cols=250 Identities=14% Similarity=0.249 Sum_probs=198.8
Q ss_pred CCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 157 GTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 157 ~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
+.|+-.+-...-..-|.++...|++. -|++|+.-.+|.|||+.... ......+......+
T Consensus 453 k~PvsqLdcl~rdnyiRSckL~pdgr-tLivGGeastlsiWDLAapT-------------------prikaeltssapaC 512 (705)
T KOG0639|consen 453 KSPVSQLDCLNRDNYIRSCKLLPDGR-TLIVGGEASTLSIWDLAAPT-------------------PRIKAELTSSAPAC 512 (705)
T ss_pred CCccccccccCcccceeeeEecCCCc-eEEeccccceeeeeeccCCC-------------------cchhhhcCCcchhh
Confidence 35555444445567799999999994 55577889999999998731 11122233334578
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
++|+.+|+.+ ..++|..||+|.|||+..... .+.|.+|+..+.||..+++|. .|-+|+-|.+||.||+|.++++
T Consensus 513 yALa~spDak-vcFsccsdGnI~vwDLhnq~~----VrqfqGhtDGascIdis~dGt-klWTGGlDntvRcWDlregrql 586 (705)
T KOG0639|consen 513 YALAISPDAK-VCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQL 586 (705)
T ss_pred hhhhcCCccc-eeeeeccCCcEEEEEccccee----eecccCCCCCceeEEecCCCc-eeecCCCccceeehhhhhhhhh
Confidence 9999999998 888999999999999977433 477999999999999999998 8999999999999999998633
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
. . ....+.|.++..+|.+ .+||.|-.++.+.|...+... -..+.-|..-|.++.|.+. +.+|++.+.|+.+
T Consensus 587 q-q-hdF~SQIfSLg~cP~~-dWlavGMens~vevlh~skp~-----kyqlhlheScVLSlKFa~c-GkwfvStGkDnlL 657 (705)
T KOG0639|consen 587 Q-Q-HDFSSQIFSLGYCPTG-DWLAVGMENSNVEVLHTSKPE-----KYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLL 657 (705)
T ss_pred h-h-hhhhhhheecccCCCc-cceeeecccCcEEEEecCCcc-----ceeecccccEEEEEEeccc-CceeeecCchhhh
Confidence 2 2 2345789999999999 899999999999888777654 4566778999999999995 5999999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
..|....+. .+|.....+.|.++..+-+.. +|++|+.+. -.||.+
T Consensus 658 nawrtPyGa-------------------------siFqskE~SsVlsCDIS~ddk-yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 658 NAWRTPYGA-------------------------SIFQSKESSSVLSCDISFDDK-YIVTGSGDKKATVYEV 703 (705)
T ss_pred hhccCcccc-------------------------ceeeccccCcceeeeeccCce-EEEecCCCcceEEEEE
Confidence 999998773 345544456899999999885 888888874 666654
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=7.6e-20 Score=175.14 Aligned_cols=242 Identities=10% Similarity=0.113 Sum_probs=166.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...+..+.|+|++..++++++.++.|++||+.. .+.+..+..+. .+..++|+|++. .
T Consensus 30 ~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~-~~~~~~~~~~g~-~ 86 (300)
T TIGR03866 30 GQRPRGITLSKDGKLLYVCASDSDTIQVIDLAT---------------------GEVIGTLPSGP-DPELFALHPNGK-I 86 (300)
T ss_pred CCCCCceEECCCCCEEEEEECCCCeEEEEECCC---------------------CcEEEeccCCC-CccEEEECCCCC-E
Confidence 344788999999966678888899999999876 33344444433 356789999987 5
Q ss_pred EE-EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-cEEEEEcCCCCceeeEEecCCCC
Q 039302 249 LV-SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG-NIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 249 l~-sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg-~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
++ +++.++.|++||+.+.... ..+. +...+.+++|+|++. ++++++.++ .+.+||.++.. ...... ....
T Consensus 87 l~~~~~~~~~l~~~d~~~~~~~----~~~~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~-~~~~~~-~~~~ 158 (300)
T TIGR03866 87 LYIANEDDNLVTVIDIETRKVL----AEIP-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYE-IVDNVL-VDQR 158 (300)
T ss_pred EEEEcCCCCeEEEEECCCCeEE----eEee-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCe-EEEEEE-cCCC
Confidence 54 5566899999999774331 1122 223468899999998 777777665 57788988764 333332 2345
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-----C--CeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-----H--PVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-----~--~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
..+++|+|++..+++++..++.|++||+++.+ .+..+..+. . ....++|+|++...+++.+.++.|.+|
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATRK----VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcce----eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 67899999994444566679999999999876 455444221 1 235688999774445555667889999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|+..... .....+ ...+.+++|+|++..++++.+.++ |.+|++.+.
T Consensus 235 d~~~~~~-----------------------~~~~~~--~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~ 281 (300)
T TIGR03866 235 DAKTYEV-----------------------LDYLLV--GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL 281 (300)
T ss_pred ECCCCcE-----------------------EEEEEe--CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC
Confidence 9976531 011122 236899999999986665556566 999998765
No 137
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.88 E-value=1e-20 Score=189.22 Aligned_cols=262 Identities=19% Similarity=0.250 Sum_probs=196.7
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.-...|.++.|+|..++++|.|+.+|.|.+||+......+. ...-.....|..+|+++.|..+..
T Consensus 240 ~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~---------------s~ls~~~~sh~~~v~~vvW~~~~~ 304 (555)
T KOG1587|consen 240 ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP---------------SGLSALEVSHSEPVTAVVWLQNEH 304 (555)
T ss_pred ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC---------------cccccccccCCcCeEEEEEeccCC
Confidence 34578999999999999999999999999999988432210 011122346888999999987544
Q ss_pred C-eEEEEeCCCeEEEEecCCCCccc--cCCCCcc------cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC---C
Q 039302 247 G-RLVSGDCNSCIHLWEPASDATWN--VDPNPFI------GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG---K 314 (479)
Q Consensus 247 ~-~l~sg~~dg~I~lwd~~~~~~~~--~~~~~~~------~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~---~ 314 (479)
+ -|++++.||.|+.|+++.-.... ....... .-...++++.|.+...+.|+.|+..|.|.--.-... .
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~ 384 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP 384 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc
Confidence 2 59999999999999886532211 0001111 223468999999999999999999999987433222 1
Q ss_pred ----ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 315 ----SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 315 ----~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
+....+..|.+.|+++.++|.+..+|++++ |-+|+||....... |+..+..+...|++++|||..+.+|+++
T Consensus 385 ~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~---Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 385 EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS---PLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred cccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC---cchhhhhccceeeeeEEcCcCceEEEEE
Confidence 123456778999999999999977888877 89999999884433 8888888899999999999999999999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
..||.|.||||..... .|......+ ....+.+.|++.+. +|+.|...| +.+|++..
T Consensus 461 d~~G~l~iWDLl~~~~--------------------~Pv~s~~~~--~~~l~~~~~s~~g~-~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 461 DGDGNLDIWDLLQDDE--------------------EPVLSQKVC--SPALTRVRWSPNGK-LLAVGDANGTTHILKLSE 517 (555)
T ss_pred cCCCceehhhhhcccc--------------------CCccccccc--ccccceeecCCCCc-EEEEecCCCcEEEEEcCc
Confidence 9999999999987642 222222222 24577888999886 777788777 99999964
Q ss_pred c
Q 039302 470 I 470 (479)
Q Consensus 470 ~ 470 (479)
.
T Consensus 518 ~ 518 (555)
T KOG1587|consen 518 S 518 (555)
T ss_pred h
Confidence 3
No 138
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=9.8e-21 Score=189.96 Aligned_cols=249 Identities=17% Similarity=0.202 Sum_probs=192.3
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
..|++.-+.|+|.|+| .+|+|++.||.|++|+..... ..|- ++..++..|.+++...
T Consensus 10 yaht~G~t~i~~d~~g-efi~tcgsdg~ir~~~~~sd~-------------------e~P~-ti~~~g~~v~~ia~~s-- 66 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDG-EFICTCGSDGDIRKWKTNSDE-------------------EEPE-TIDISGELVSSIACYS-- 66 (933)
T ss_pred hhccCceEEEEEcCCC-CEEEEecCCCceEEeecCCcc-------------------cCCc-hhhccCceeEEEeecc--
Confidence 5899999999999999 588899999999999987732 1221 2222667777777654
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
++|++|+.+++|++|.+..+... ..+...+-++++++|+-+|. ++|.||.|-.|++-++.... ....+.+|..
T Consensus 67 -~~f~~~s~~~tv~~y~fps~~~~----~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s-~~~~lrgh~a 139 (933)
T KOG1274|consen 67 -NHFLTGSEQNTVLRYKFPSGEED----TILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSS-QEKVLRGHDA 139 (933)
T ss_pred -cceEEeeccceEEEeeCCCCCcc----ceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccc-hheeecccCC
Confidence 28999999999999999776542 22444567899999999998 99999999999999998875 6778899999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--------CCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--------HKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--------h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+|.++.|+|.+ .+||+.+-||.|+|||+..+. ...++.+ ....++.++|+|++ ..|+..+.|+.|+
T Consensus 140 pVl~l~~~p~~-~fLAvss~dG~v~iw~~~~~~----~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vk 213 (933)
T KOG1274|consen 140 PVLQLSYDPKG-NFLAVSSCDGKVQIWDLQDGI----LSKTLTGVDKDNEFILSRICTRLAWHPKG-GTLAVPPVDNTVK 213 (933)
T ss_pred ceeeeeEcCCC-CEEEEEecCceEEEEEcccch----hhhhcccCCccccccccceeeeeeecCCC-CeEEeeccCCeEE
Confidence 99999999999 999999999999999999876 3333322 14567889999976 6677777899999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeeccCC
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNIQS 472 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~~~ 472 (479)
+|+....... ..+.--+ .+..+..++|+|+|.++.+++-++.|.||+...+..
T Consensus 214 vy~r~~we~~---------------------f~Lr~~~-~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~ 266 (933)
T KOG1274|consen 214 VYSRKGWELQ---------------------FKLRDKL-SSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER 266 (933)
T ss_pred EEccCCceeh---------------------eeecccc-cccceEEEEEcCCCcEEeeeccCCcEEEEecccchh
Confidence 9998876321 0111111 123499999999997555444444599999986544
No 139
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=1.9e-21 Score=171.32 Aligned_cols=216 Identities=19% Similarity=0.358 Sum_probs=170.8
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.|-+.|+||.|.|++.+++ + -.+..|.+|++........ .-+...-.+|....++-+|+|...
T Consensus 121 eavg~i~cvew~Pns~kla-s-m~dn~i~l~~l~ess~~va---------------ev~ss~s~e~~~~ftsg~WspHHd 183 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLA-S-MDDNNIVLWSLDESSKIVA---------------EVLSSESAEMRHSFTSGAWSPHHD 183 (370)
T ss_pred HHhCceeeEEEcCCCCeeE-E-eccCceEEEEcccCcchhe---------------eecccccccccceecccccCCCCc
Confidence 5667999999999885544 4 3488999999987422110 000011113566788889999655
Q ss_pred C-eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 247 G-RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 247 ~-~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
+ .+++. .|+++..||+++..... ..-.+|...|.++.|+|+-..+|++|+.||.|+|||+|..+.++..+..|..
T Consensus 184 gnqv~tt-~d~tl~~~D~RT~~~~~---sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsH 259 (370)
T KOG1007|consen 184 GNQVATT-SDSTLQFWDLRTMKKNN---SIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSH 259 (370)
T ss_pred cceEEEe-CCCcEEEEEccchhhhc---chhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCce
Confidence 5 55554 48999999999765432 3356788899999999999999999999999999999999889999999999
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-------------------------CceEEEeecCCCCeEEEEEe
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG-------------------------DSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~-------------------------~~~~~~~~~h~~~I~~v~~s 380 (479)
.|.++.|+|....+|++|+.|..|.+|-....... ...+.++..|...|++++|+
T Consensus 260 WvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWS 339 (370)
T KOG1007|consen 260 WVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWS 339 (370)
T ss_pred EEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeec
Confidence 99999999998899999999999999976543311 12455788899999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~ 403 (479)
..++.+||+-|.||++.|=.+..
T Consensus 340 sadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 340 SADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred cCCCeeEEEeccCceEEeecCCh
Confidence 99999999999999999866543
No 140
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=1.5e-21 Score=188.38 Aligned_cols=257 Identities=21% Similarity=0.259 Sum_probs=178.7
Q ss_pred EEEec--CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 039302 175 IRAMS--QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSG 252 (479)
Q Consensus 175 v~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 252 (479)
..|++ ...++||.+.++|.|.++|.....-.+ ....+..+..|...|+.+.|.| ++.+|+++
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~---------------ee~~lk~~~aH~nAifDl~wap-ge~~lVsa 118 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRL---------------EERQLKKPLAHKNAIFDLKWAP-GESLLVSA 118 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcch---------------hhhhhcccccccceeEeeccCC-CceeEEEc
Confidence 44443 446899999999999999988732221 1233456678999999999999 65699999
Q ss_pred eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-----------------
Q 039302 253 DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS----------------- 315 (479)
Q Consensus 253 ~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~----------------- 315 (479)
+.|.+|++||+.+..... ...+.+|.+.|.+++|.|.+..+|++|+.||.|.|||+|....
T Consensus 119 sGDsT~r~Wdvk~s~l~G--~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ 196 (720)
T KOG0321|consen 119 SGDSTIRPWDVKTSRLVG--GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTA 196 (720)
T ss_pred cCCceeeeeeeccceeec--ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCC
Confidence 999999999998865533 2358899999999999999999999999999999999985420
Q ss_pred --e-------eeEEecCCCCEEE---EEEcCCCCcEEEEEeC-CCeEEEEeCCCCCCCC--ce--EEEeecC---CCCeE
Q 039302 316 --A-------LMSFKAHNADVNV---ISWNRLASCLLASGSD-DGTFSIHDLRLLKGGD--SV--VAHFEYH---KHPVT 375 (479)
Q Consensus 316 --~-------~~~~~~h~~~v~~---l~~~p~~~~~l~sgs~-dg~i~iwDlr~~~~~~--~~--~~~~~~h---~~~I~ 375 (479)
+ .....++...|.+ +-+..+. ..||+++. |+.|+|||||...... .+ +..+..| ...++
T Consensus 197 ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~ 275 (720)
T KOG0321|consen 197 PTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQV 275 (720)
T ss_pred CCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeE
Confidence 0 1111334444444 4444555 67787777 9999999999875321 12 2233334 34577
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEE
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIV 455 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~ 455 (479)
++.....+ .+|.+.+.|+.|++|++..... .|..+++.+....--..-..+|++. .++
T Consensus 276 nL~lDssG-t~L~AsCtD~sIy~ynm~s~s~--------------------sP~~~~sg~~~~sf~vks~lSpd~~-~l~ 333 (720)
T KOG0321|consen 276 NLILDSSG-TYLFASCTDNSIYFYNMRSLSI--------------------SPVAEFSGKLNSSFYVKSELSPDDC-SLL 333 (720)
T ss_pred EEEecCCC-CeEEEEecCCcEEEEeccccCc--------------------CchhhccCcccceeeeeeecCCCCc-eEe
Confidence 88877755 5666666699999999998742 2223333332111122234567774 667
Q ss_pred EEcCCC-ceEEeeeccCC
Q 039302 456 STAADG-FNILMPSNIQS 472 (479)
Q Consensus 456 s~~~dg-i~iw~~~~~~~ 472 (479)
|++.+. ..+|.+.+.+.
T Consensus 334 SgSsd~~ayiw~vs~~e~ 351 (720)
T KOG0321|consen 334 SGSSDEQAYIWVVSSPEA 351 (720)
T ss_pred ccCCCcceeeeeecCccC
Confidence 777666 99999887643
No 141
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.6e-21 Score=186.94 Aligned_cols=255 Identities=18% Similarity=0.298 Sum_probs=183.6
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|++.|.+|...|.| ..||+|+.||+|+||.+.+ +.++.++. ..+.|.|++|+
T Consensus 394 lvyrGHtg~Vr~iSvdp~G-~wlasGsdDGtvriWEi~T---------------------gRcvr~~~-~d~~I~~vaw~ 450 (733)
T KOG0650|consen 394 LVYRGHTGLVRSISVDPSG-EWLASGSDDGTVRIWEIAT---------------------GRCVRTVQ-FDSEIRSVAWN 450 (733)
T ss_pred eeEeccCCeEEEEEecCCc-ceeeecCCCCcEEEEEeec---------------------ceEEEEEe-ecceeEEEEec
Confidence 5678999999999999988 8999999999999999988 56666554 23467777777
Q ss_pred CCCCCeEEEEeCCCeEEEEec-----------------------------------------------------------
Q 039302 243 PVAPGRLVSGDCNSCIHLWEP----------------------------------------------------------- 263 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~----------------------------------------------------------- 263 (479)
|.+..-++.......+.|-+.
T Consensus 451 P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWH 530 (733)
T KOG0650|consen 451 PLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWH 530 (733)
T ss_pred CCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeee
Confidence 766543333333333433332
Q ss_pred -----------------------CCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 264 -----------------------ASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 264 -----------------------~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
..... +.+|....+.|.++.|+|... +|++++ -..|+|||+.... .+..+
T Consensus 531 rkGDYlatV~~~~~~~~VliHQLSK~~s----Q~PF~kskG~vq~v~FHPs~p-~lfVaT-q~~vRiYdL~kqe-lvKkL 603 (733)
T KOG0650|consen 531 RKGDYLATVMPDSGNKSVLIHQLSKRKS----QSPFRKSKGLVQRVKFHPSKP-YLFVAT-QRSVRIYDLSKQE-LVKKL 603 (733)
T ss_pred cCCceEEEeccCCCcceEEEEecccccc----cCchhhcCCceeEEEecCCCc-eEEEEe-ccceEEEehhHHH-HHHHH
Confidence 11111 122323345566777777766 444444 4568888887643 55555
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
......|..++.+|.| .-|+.|+.|+.+..||+..... +..+++.|...+++|+|++.- .+||+|+.||++.|+-
T Consensus 604 ~tg~kwiS~msihp~G-Dnli~gs~d~k~~WfDldlssk---Pyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 604 LTGSKWISSMSIHPNG-DNLILGSYDKKMCWFDLDLSSK---PYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFH 678 (733)
T ss_pred hcCCeeeeeeeecCCC-CeEEEecCCCeeEEEEcccCcc---hhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEe
Confidence 5566789999999999 6677899999999999988766 889999999999999999965 8999999999999987
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC--CeeeEEEeCCCCcEEEEEcCCCceEE
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK--DLKELHWHTQVPGMIVSTAADGFNIL 465 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~--~V~~v~w~p~~~~ll~s~~~dgi~iw 465 (479)
-....+- ...+.-+|...+..|.-.. .|.++.|||..++++.+++++.|++|
T Consensus 679 g~VY~Dl-------------~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 679 GMVYNDL-------------LQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeehhh-------------hcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 6654321 1122345666666665332 48999999999987777776668887
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.6e-21 Score=183.02 Aligned_cols=222 Identities=20% Similarity=0.300 Sum_probs=182.5
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
.+|+++.++ .++++|+..+.|+|||+.. ......+++|...|+++.++-... +|
T Consensus 83 ~Cv~~~s~S----~y~~sgG~~~~Vkiwdl~~---------------------kl~hr~lkdh~stvt~v~YN~~De-yi 136 (673)
T KOG4378|consen 83 FCVACASQS----LYEISGGQSGCVKIWDLRA---------------------KLIHRFLKDHQSTVTYVDYNNTDE-YI 136 (673)
T ss_pred HHHhhhhcc----eeeeccCcCceeeehhhHH---------------------HHHhhhccCCcceeEEEEecCCcc-ee
Confidence 344444444 6888999999999999986 455667889999999999999988 99
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
|+++..|.|.|..+.++... .+|... ...|.-+.|+|..+.+|.+++.+|.|.+||+............|..+..
T Consensus 137 Asvs~gGdiiih~~~t~~~t----t~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~ 212 (673)
T KOG4378|consen 137 ASVSDGGDIIIHGTKTKQKT----TTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCR 212 (673)
T ss_pred EEeccCCcEEEEecccCccc----cceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcC
Confidence 99999999999999876542 333322 4567799999999999999999999999999987644444588999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChH
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEE 408 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~ 408 (479)
.|+|+|.++.+|++.+.|..|.+||++... ....+.. ..|.++|+|.+++ .+|++|+..|.|..||++..+
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~----s~~~l~y-~~Plstvaf~~~G-~~L~aG~s~G~~i~YD~R~~k--- 283 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQA----STDRLTY-SHPLSTVAFSECG-TYLCAGNSKGELIAYDMRSTK--- 283 (673)
T ss_pred cceecCCccceEEEecccceEEEeeccccc----ccceeee-cCCcceeeecCCc-eEEEeecCCceEEEEecccCC---
Confidence 999999999999999999999999999776 4555543 6689999999955 999999999999999999874
Q ss_pred HHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 409 EEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
.|...+-.|. ..|++++|-|.-
T Consensus 284 ------------------~Pv~v~sah~--~sVt~vafq~s~ 305 (673)
T KOG4378|consen 284 ------------------APVAVRSAHD--ASVTRVAFQPSP 305 (673)
T ss_pred ------------------CCceEeeecc--cceeEEEeeecc
Confidence 3334444454 679999998863
No 143
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.6e-20 Score=175.21 Aligned_cols=259 Identities=14% Similarity=0.176 Sum_probs=190.9
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-Cce
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v 236 (479)
+|.+ ..+.--..+|.+++|.|+|...+++++.....+.||+.+. ....+....++. ..+
T Consensus 247 N~~l-qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a-------------------k~~k~~~~~g~e~~~~ 306 (514)
T KOG2055|consen 247 NPKL-QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA-------------------KVTKLKPPYGVEEKSM 306 (514)
T ss_pred Chhh-eeeeeccCccceeeecCCCceEEEecccceEEEEeecccc-------------------ccccccCCCCcccchh
Confidence 4544 3344456799999999999768888899999999999773 123333444444 356
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
.....+++++ +|+..+..|.|+|....++... ..+ .-.+.|.+++|+.+++ .|++++.+|.|.+||++... +
T Consensus 307 e~FeVShd~~-fia~~G~~G~I~lLhakT~eli----~s~-KieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~~-~ 378 (514)
T KOG2055|consen 307 ERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELI----TSF-KIEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQNS-C 378 (514)
T ss_pred heeEecCCCC-eEEEcccCceEEeehhhhhhhh----hee-eeccEEeeEEEecCCc-EEEEEcCCceEEEEecCCcc-e
Confidence 6778899998 9999999999999988775431 122 2367899999999998 77777779999999999984 6
Q ss_pred eeEEecC-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-
Q 039302 317 LMSFKAH-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA- 392 (479)
Q Consensus 317 ~~~~~~h-~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~- 392 (479)
+..+... .-.-++++.++++ .+||+|++.|.|.|||..+... ...|+..+..-...|++++|+|+. .+||.+|.
T Consensus 379 ~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~ 456 (514)
T KOG2055|consen 379 LHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRV 456 (514)
T ss_pred EEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhc
Confidence 6666422 2234677778888 8999999999999999764321 134788888788899999999955 88888775
Q ss_pred -CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 393 -DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 393 -Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
++.+++-.+..... -.+.|+.--. -..|++++|+|.+ +++|.|...| +.+|++.
T Consensus 457 ~knalrLVHvPS~TV-----------------FsNfP~~n~~----vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 457 KKNALRLVHVPSCTV-----------------FSNFPTSNTK----VGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cccceEEEeccceee-----------------eccCCCCCCc----ccceEEEEecCCC-ceEEeecCCCceeeEeec
Confidence 77888887765421 1133332111 1249999999998 4777777777 9999975
No 144
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=3.1e-21 Score=173.77 Aligned_cols=259 Identities=17% Similarity=0.296 Sum_probs=190.1
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC-CCCeEEEEeCCCeEEEE
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV-APGRLVSGDCNSCIHLW 261 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~-~~~~l~sg~~dg~I~lw 261 (479)
..+|++.++|.|++||..+ ++.+..|+++...++.++|... +...+.+|+.||+|++|
T Consensus 41 ~~vav~lSngsv~lyd~~t---------------------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w 99 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGT---------------------GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW 99 (376)
T ss_pred eeEEEEecCCeEEEEeccc---------------------hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence 5788889999999999987 6778889999999999999875 55589999999999999
Q ss_pred ecCCCCccccCCCCcccCC-CcEEEEEECCCCCcEEEEEe----CCCcEEEEEcCCCCceeeE-EecCCCCEEEEEEcCC
Q 039302 262 EPASDATWNVDPNPFIGHA-ASVEDLQWSPTESDVFASCS----VDGNIAIWDTRVGKSALMS-FKAHNADVNVISWNRL 335 (479)
Q Consensus 262 d~~~~~~~~~~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s----~dg~I~iwD~~~~~~~~~~-~~~h~~~v~~l~~~p~ 335 (479)
|++....... ..+..+. .+..+++.+-.+. ++++|. .+-.|.+||+|..++++.. ...|...|++++|+|.
T Consensus 100 D~Rs~~e~a~--~~~~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~ 176 (376)
T KOG1188|consen 100 DIRSQAESAR--ISWTQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS 176 (376)
T ss_pred Eeecchhhhh--eeccCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC
Confidence 9988655332 3344554 4666777665565 777775 3678999999998764444 4789999999999999
Q ss_pred CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHH----
Q 039302 336 ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEA---- 411 (479)
Q Consensus 336 ~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~---- 411 (479)
.+++|++||.||.|.|||+........++.++ .|...|.++.|....-..|.+-+...+..+|++....+.....
T Consensus 177 ~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~ 255 (376)
T KOG1188|consen 177 DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDV 255 (376)
T ss_pred CCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccc
Confidence 99999999999999999998775433444444 4788899999997554578999999999999998776322110
Q ss_pred ---HHhh----------h----c-----ccc-----------cCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEE
Q 039302 412 ---EFKA----------K----T-----REQ-----------VNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVST 457 (479)
Q Consensus 412 ---~~~~----------~----~-----~~~-----------~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~ 457 (479)
.... . . ... .......-..+...++|+. -|+++.|.-.+ .++.+|
T Consensus 256 ~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-~~l~TG 334 (376)
T KOG1188|consen 256 SADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-DVLYTG 334 (376)
T ss_pred hhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-ceeecc
Confidence 0000 0 0 000 0011112222333344455 48888888665 599999
Q ss_pred cCCC-ceEEee
Q 039302 458 AADG-FNILMP 467 (479)
Q Consensus 458 ~~dg-i~iw~~ 467 (479)
|+|| +.+|+.
T Consensus 335 GEDG~l~~Wk~ 345 (376)
T KOG1188|consen 335 GEDGLLQAWKV 345 (376)
T ss_pred CCCceEEEEec
Confidence 9999 999994
No 145
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.1e-20 Score=166.61 Aligned_cols=268 Identities=18% Similarity=0.256 Sum_probs=195.3
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.|.. .+|++|++.| .+||.|+.+|.|.|||+.+ ......+.+|..+|.+++||++|.
T Consensus 22 d~~~-a~~~~Fs~~G-~~lAvGc~nG~vvI~D~~T---------------------~~iar~lsaH~~pi~sl~WS~dgr 78 (405)
T KOG1273|consen 22 DNPL-AECCQFSRWG-DYLAVGCANGRVVIYDFDT---------------------FRIARMLSAHVRPITSLCWSRDGR 78 (405)
T ss_pred cCCc-cceEEeccCc-ceeeeeccCCcEEEEEccc---------------------cchhhhhhccccceeEEEecCCCC
Confidence 3444 8999999999 8999999999999999998 556678899999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC---
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH--- 323 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h--- 323 (479)
.|+|++.|..|.+||+..+... . -....++|..++|+|...+.++++-.+..-.+-++..+...+......
T Consensus 79 -~LltsS~D~si~lwDl~~gs~l----~-rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 79 -KLLTSSRDWSIKLWDLLKGSPL----K-RIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred -EeeeecCCceeEEEeccCCCce----e-EEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCcccc
Confidence 9999999999999999887542 1 123468999999999988888888777777777776543222211111
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-CCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-HPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
+....+..|.+.| .+|++|...|.+.++|..+.+ ++..++--. ..|.+|.++..+ ..|+.-+.|..|+.|+++
T Consensus 153 n~sas~~~fdr~g-~yIitGtsKGkllv~~a~t~e----~vas~rits~~~IK~I~~s~~g-~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 153 NSSASHGVFDRRG-KYIITGTSKGKLLVYDAETLE----CVASFRITSVQAIKQIIVSRKG-RFLIINTSDRVIRTYEIS 226 (405)
T ss_pred ccccccccccCCC-CEEEEecCcceEEEEecchhe----eeeeeeechheeeeEEEEeccC-cEEEEecCCceEEEEehh
Confidence 1112233588888 999999999999999999998 788888766 789999998854 999999999999999988
Q ss_pred CCC------ChHHHHHH---hhhcc----cccCC----------------CCCCCCceEEeecCCC--CeeeEEEeCCCC
Q 039302 403 LEK------DEEEEAEF---KAKTR----EQVNA----------------PEDLPPQLLFIHQGQK--DLKELHWHTQVP 451 (479)
Q Consensus 403 ~~~------~~~~~~~~---~~~~~----~~~~~----------------~~~~p~~l~~~h~g~~--~V~~v~w~p~~~ 451 (479)
... ..+....+ -++.+ ..... -+.....|+.+..|.+ ...++.|||-.+
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp 306 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP 306 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee
Confidence 321 11211221 11110 00000 0112223333333333 488999999987
Q ss_pred cEEEEEcCCCceEEeeecc
Q 039302 452 GMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 452 ~ll~s~~~dgi~iw~~~~~ 470 (479)
+++|-+.+.+.||....+
T Consensus 307 -~i~si~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 307 -IIASIASGVVYIWAVVQV 324 (405)
T ss_pred -eeeeccCCceEEEEeecc
Confidence 788887777999977543
No 146
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=7.8e-20 Score=178.26 Aligned_cols=279 Identities=17% Similarity=0.231 Sum_probs=199.9
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCccc------ccccc-cc---------------------cC--
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNA------LAESE-TV---------------------AG-- 214 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~------~~~~~-~~---------------------~~-- 214 (479)
+.||...|+++.|+|.+ ..|.++|.|.++.||.-.....- +...+ .. ..
T Consensus 263 l~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 263 LMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred hcCcccceEEEEEccch-hhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 46999999999999999 45667799999999987664100 00000 00 00
Q ss_pred -CCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCC--------------------------
Q 039302 215 -HGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDA-------------------------- 267 (479)
Q Consensus 215 -~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~-------------------------- 267 (479)
.+........+.....||.+.|.+++|.|.|. +|++.+.|.+-+||-.-..+
T Consensus 342 lWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~ 420 (764)
T KOG1063|consen 342 LWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDL 420 (764)
T ss_pred EEeccCccceeeccccccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeehccCCc
Confidence 00011112344555679999999999999998 99999999888886432000
Q ss_pred ---------------------------------------------------c--c-------------------------
Q 039302 268 ---------------------------------------------------T--W------------------------- 269 (479)
Q Consensus 268 ---------------------------------------------------~--~------------------------- 269 (479)
+ .
T Consensus 421 ~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L 500 (764)
T KOG1063|consen 421 QFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCEL 500 (764)
T ss_pred eeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhc
Confidence 0 0
Q ss_pred --------------ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 270 --------------NVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 270 --------------~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
-.....+-||...|.+++.+|+++ ++||++.. ..|++|++.+-. ....+..|+-.|+.|
T Consensus 501 ~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gn-liASaCKS~~~ehAvI~lw~t~~W~-~~~~L~~HsLTVT~l 578 (764)
T KOG1063|consen 501 TEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGN-LIASACKSSLKEHAVIRLWNTANWL-QVQELEGHSLTVTRL 578 (764)
T ss_pred cCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCC-EEeehhhhCCccceEEEEEeccchh-hhheecccceEEEEE
Confidence 000111237889999999999998 99998764 359999998875 556789999999999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
+|+|++ .+|++.+.|.++.+|...............+.|+.-|++..|+|+. .+|+|+|.|.+|+||......+..
T Consensus 579 ~FSpdg-~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde-~~FaTaSRDK~VkVW~~~~~~d~~-- 654 (764)
T KOG1063|consen 579 AFSPDG-RYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE-KYFATASRDKKVKVWEEPDLRDKY-- 654 (764)
T ss_pred EECCCC-cEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc-ceeEEecCCceEEEEeccCchhhh--
Confidence 999999 9999999999999999865543222334477899999999999965 889999999999999998773210
Q ss_pred HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC----CcEEEEEcCCC-ceEEeeec
Q 039302 411 AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV----PGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~----~~ll~s~~~dg-i~iw~~~~ 469 (479)
.+.-....+ ...|+.++|+|-. ..+++.|-..| |.+|+...
T Consensus 655 ----------------i~~~a~~~~--~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 655 ----------------ISRFACLKF--SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred ----------------hhhhchhcc--CCceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 000011112 2579999998843 23778888888 99998663
No 147
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=1.6e-19 Score=161.58 Aligned_cols=252 Identities=17% Similarity=0.290 Sum_probs=183.5
Q ss_pred EecCCcceeEEEEecC------CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC---c
Q 039302 165 KVAHQGCVNRIRAMSQ------NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD---E 235 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~------~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~ 235 (479)
...-...|...+|.+. ...++|+.+.+.-|++||.-+.. .+.-.....|.. .
T Consensus 100 r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~-------------------lraSy~~ydh~de~ta 160 (406)
T KOG2919|consen 100 RYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGK-------------------LRASYRAYDHQDEYTA 160 (406)
T ss_pred EeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccc-------------------cccchhhhhhHHhhhh
Confidence 3344567888888741 13788888999999999988721 122222223444 4
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc-cccC---CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT-WNVD---PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~-~~~~---~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
..+|+|+|+|. +|++|. ...|++||+...+. ..+- .....+..+-+.+++|+|.....++.|+....+-||.-.
T Consensus 161 AhsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~ 238 (406)
T KOG2919|consen 161 AHSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDD 238 (406)
T ss_pred heeEEecCCCC-eEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecC
Confidence 56899999998 888877 67999999954333 2110 111234477899999999988799999999888888776
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCCCCCceEEEeecCCC-CeEEEEE--eCCCCCEE
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLASCLLASGSD-DGTFSIHDLRLLKGGDSVVAHFEYHKH-PVTSIEW--SPHEGSTL 387 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~-dg~i~iwDlr~~~~~~~~~~~~~~h~~-~I~~v~~--sp~~~~~l 387 (479)
... ++..+.+|.+.|+.++|.++| +.|.+|+. |-.|..||+|.... ++..+..|.. .-..|.| .|.+ .+|
T Consensus 239 ~~~-pl~llggh~gGvThL~~~edG-n~lfsGaRk~dkIl~WDiR~~~~---pv~~L~rhv~~TNQRI~FDld~~~-~~L 312 (406)
T KOG2919|consen 239 GRR-PLQLLGGHGGGVTHLQWCEDG-NKLFSGARKDDKILCWDIRYSRD---PVYALERHVGDTNQRILFDLDPKG-EIL 312 (406)
T ss_pred CCC-ceeeecccCCCeeeEEeccCc-CeecccccCCCeEEEEeehhccc---hhhhhhhhccCccceEEEecCCCC-cee
Confidence 654 788888999999999999999 67777765 67899999999876 8888888876 4445655 5644 999
Q ss_pred EEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 388 AVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
++|+.||.|++||+....+. +..+..|. .-|+.|++||-.| ++++++.. ++|+.
T Consensus 313 asG~tdG~V~vwdlk~~gn~---------------------~sv~~~~s--d~vNgvslnP~mp-ilatssGq--r~f~~ 366 (406)
T KOG2919|consen 313 ASGDTDGSVRVWDLKDLGNE---------------------VSVTGNYS--DTVNGVSLNPIMP-ILATSSGQ--RIFKY 366 (406)
T ss_pred eccCCCccEEEEecCCCCCc---------------------cccccccc--ccccceecCcccc-eeeeccCc--eeecC
Confidence 99999999999999885421 12222222 3599999999987 67776666 66655
Q ss_pred ec
Q 039302 468 SN 469 (479)
Q Consensus 468 ~~ 469 (479)
.+
T Consensus 367 ~~ 368 (406)
T KOG2919|consen 367 PK 368 (406)
T ss_pred CC
Confidence 43
No 148
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=1.2e-20 Score=172.49 Aligned_cols=283 Identities=16% Similarity=0.266 Sum_probs=196.8
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCce
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v 236 (479)
.|+...-+.+|.|+||+|.|+.++ .+||+|+.|..++||++....... ..+|+..... |...|
T Consensus 45 R~~~qKD~~~H~GCiNAlqFS~N~-~~L~SGGDD~~~~~W~~de~~~~k---------------~~KPI~~~~~~H~SNI 108 (609)
T KOG4227|consen 45 RPFCQKDVREHTGCINALQFSHND-RFLASGGDDMHGRVWNVDELMVRK---------------TPKPIGVMEHPHRSNI 108 (609)
T ss_pred cchhhhhhhhhccccceeeeccCC-eEEeecCCcceeeeechHHHHhhc---------------CCCCceeccCccccce
Confidence 445555678999999999999997 899999999999999997632211 2456655433 55799
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
+||+|...+. +|.+|..+++|.+.|+.+.+...+ ..-....+.|..+..+|..+ .|++.+.+|.|.+||+|....+
T Consensus 109 F~L~F~~~N~-~~~SG~~~~~VI~HDiEt~qsi~V--~~~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 109 FSLEFDLENR-FLYSGERWGTVIKHDIETKQSIYV--ANENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred EEEEEccCCe-eEecCCCcceeEeeecccceeeee--ecccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCC
Confidence 9999999887 999999999999999988655321 11222345899999999976 9999999999999999987533
Q ss_pred eeE--EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------------------------------
Q 039302 317 LMS--FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---------------------------------- 360 (479)
Q Consensus 317 ~~~--~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---------------------------------- 360 (479)
... .........++-|+|..+.+|++.+..+.+.+||+|.....
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 322 23445668899999999999999999999999999865431
Q ss_pred CceEEEeecCC------------------CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccC
Q 039302 361 DSVVAHFEYHK------------------HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVN 422 (479)
Q Consensus 361 ~~~~~~~~~h~------------------~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 422 (479)
..+-.-+..|. ..|.+++|.- .+.+++|+.+-.|++|.+....+.....+ . ..
T Consensus 265 ~~~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~--D~~v~tGSD~~~i~~WklP~~~ds~G~~~-I------G~ 335 (609)
T KOG4227|consen 265 GKCPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFID--DYTVATGSDHWGIHIWKLPRANDSYGFTQ-I------GH 335 (609)
T ss_pred cCCCEEeeeecccceeEeccCCCCcceeeeeeeeeeeec--ceeeeccCcccceEEEecCCCccccCccc-c------Cc
Confidence 00000011111 1244555553 36699999999999999987643211000 0 00
Q ss_pred CCCCCCC-----ceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 423 APEDLPP-----QLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 423 ~~~~~p~-----~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..+..|. ..+.+..||. -++.|.|+|.. ++|+|.+-.. |+||....+
T Consensus 336 ~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~-~~l~SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 336 DEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN-NLLVSSGVENSFKLWSDHRL 389 (609)
T ss_pred chhhCchhheecceeEEEecccccccceeecCCc-ceEeccchhhheeccccccC
Confidence 0111121 1223334454 58999999988 5777777665 777766543
No 149
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=1.4e-18 Score=163.82 Aligned_cols=220 Identities=20% Similarity=0.325 Sum_probs=163.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc-ccccccc------cccCCCC--------Ccc----ccCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHL-NALAESE------TVAGHGA--------PQV----LNQS 224 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~------~~~~~~~--------~~~----~~~~ 224 (479)
+...|.+.|.+++...+| .++ +|+.|..|..||-.-.. ...+.+. ..+.... ... .+..
T Consensus 282 ~~~aH~ggv~~L~~lr~G-tll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~ 359 (626)
T KOG2106|consen 282 QVHAHDGGVFSLCMLRDG-TLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENG 359 (626)
T ss_pred EeeecCCceEEEEEecCc-cEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCC
Confidence 334999999999999999 555 59999999999932211 1111111 1111100 000 1223
Q ss_pred CcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc
Q 039302 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN 304 (479)
Q Consensus 225 ~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~ 304 (479)
...+..+|..+.+.++.+|..+ +|+|++.|+.++||+ ...-.|. .--..++.|+.|+|.+ .+|.|+..|.
T Consensus 360 f~~~v~gh~delwgla~hps~~-q~~T~gqdk~v~lW~-~~k~~wt------~~~~d~~~~~~fhpsg--~va~Gt~~G~ 429 (626)
T KOG2106|consen 360 FTLTVQGHGDELWGLATHPSKN-QLLTCGQDKHVRLWN-DHKLEWT------KIIEDPAECADFHPSG--VVAVGTATGR 429 (626)
T ss_pred ceEEEEecccceeeEEcCCChh-heeeccCcceEEEcc-CCceeEE------EEecCceeEeeccCcc--eEEEeeccce
Confidence 3345578999999999999998 999999999999999 2222222 1124689999999998 7999999999
Q ss_pred EEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 305 IAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
..+.|+.+. .+.++...+.++++++|+|+| .+||.|+.|+.|+||-+..... .....-+.|..+|+.+.|++++
T Consensus 430 w~V~d~e~~--~lv~~~~d~~~ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~--~y~r~~k~~gs~ithLDwS~Ds- 503 (626)
T KOG2106|consen 430 WFVLDTETQ--DLVTIHTDNEQLSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGR--KYSRVGKCSGSPITHLDWSSDS- 503 (626)
T ss_pred EEEEecccc--eeEEEEecCCceEEEEEcCCC-CEEEEecCCCeEEEEEECCCCc--EEEEeeeecCceeEEeeecCCC-
Confidence 999999985 344555458999999999999 9999999999999999876653 1222223355899999999965
Q ss_pred CEEEEEeCCCcEEEEEC
Q 039302 385 STLAVSSADNQLTIWDL 401 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl 401 (479)
++|.+-+.|-.|..|.-
T Consensus 504 ~~~~~~S~d~eiLyW~~ 520 (626)
T KOG2106|consen 504 QFLVSNSGDYEILYWKP 520 (626)
T ss_pred ceEEeccCceEEEEEcc
Confidence 99999999999999943
No 150
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=5.3e-20 Score=172.93 Aligned_cols=244 Identities=17% Similarity=0.284 Sum_probs=186.8
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
++.++|...+.-.+|+.+.|..|++|.-..... ....+....+. .-+|++...... ++++
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~-----------------~Vp~~~k~~gd--~~~Cv~~~s~S~-y~~s 96 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTP-----------------EVPRVRKLTGD--NAFCVACASQSL-YEIS 96 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCC-----------------ccceeeccccc--hHHHHhhhhcce-eeec
Confidence 899999987744556667788899998766210 01122222232 445666555555 9999
Q ss_pred EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC-CCCEEEE
Q 039302 252 GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH-NADVNVI 330 (479)
Q Consensus 252 g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h-~~~v~~l 330 (479)
|+..+.|+|||++.. . ..+.+.+|++.|+++.++..+. ++|+++..|-|.|..+.++. ....+... ...|.-+
T Consensus 97 gG~~~~Vkiwdl~~k-l---~hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~-~tt~f~~~sgqsvRll 170 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAK-L---IHRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQ-KTTTFTIDSGQSVRLL 170 (673)
T ss_pred cCcCceeeehhhHHH-H---HhhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCc-cccceecCCCCeEEEe
Confidence 999999999999742 2 2467889999999999999888 99999999999999999875 33444333 3456689
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
.|+|....+|.+++++|.|.+||+....+ ...-...|..|...|+|+|.++.+|++.|.|..|.+||++....
T Consensus 171 ~ys~skr~lL~~asd~G~VtlwDv~g~sp---~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s---- 243 (673)
T KOG4378|consen 171 RYSPSKRFLLSIASDKGAVTLWDVQGMSP---IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS---- 243 (673)
T ss_pred ecccccceeeEeeccCCeEEEEeccCCCc---ccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc----
Confidence 99999888999999999999999988773 33445679999999999999999999999999999999986531
Q ss_pred HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 411 AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
...+.+.| +.+.|+|.++|. +|+.|...| |..|+++..
T Consensus 244 -----------------~~~l~y~~----Plstvaf~~~G~-~L~aG~s~G~~i~YD~R~~ 282 (673)
T KOG4378|consen 244 -----------------TDRLTYSH----PLSTVAFSECGT-YLCAGNSKGELIAYDMRST 282 (673)
T ss_pred -----------------cceeeecC----CcceeeecCCce-EEEeecCCceEEEEecccC
Confidence 22444444 589999999996 555555555 999998765
No 151
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.5e-18 Score=169.20 Aligned_cols=214 Identities=18% Similarity=0.286 Sum_probs=172.4
Q ss_pred CceeEEEEecC-CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 158 TPILQLRKVAH-QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H-~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
.+.++..+.++ .+.|-.++|++.+ +|+ +.+.+|.|.-||+.+ .+++..+....+.|
T Consensus 57 ~w~~~~vi~g~~drsIE~L~W~e~~-RLF-S~g~sg~i~EwDl~~---------------------lk~~~~~d~~gg~I 113 (691)
T KOG2048|consen 57 NWFLEPVIHGPEDRSIESLAWAEGG-RLF-SSGLSGSITEWDLHT---------------------LKQKYNIDSNGGAI 113 (691)
T ss_pred CceeeEEEecCCCCceeeEEEccCC-eEE-eecCCceEEEEeccc---------------------CceeEEecCCCcce
Confidence 34444444444 4689999999766 455 668899999999998 78888888888999
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
++++.+|.+. .++.|+.||.+..++...+.... ...+...++.|.++.|+|++. .+++|+.||.|++||...+...
T Consensus 114 Wsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~--~r~l~rq~sRvLslsw~~~~~-~i~~Gs~Dg~Iriwd~~~~~t~ 189 (691)
T KOG2048|consen 114 WSIAINPENT-ILAIGCDDGVLYDFSIGPDKITY--KRSLMRQKSRVLSLSWNPTGT-KIAGGSIDGVIRIWDVKSGQTL 189 (691)
T ss_pred eEEEeCCccc-eEEeecCCceEEEEecCCceEEE--EeecccccceEEEEEecCCcc-EEEecccCceEEEEEcCCCceE
Confidence 9999999998 99999999988888776543321 244555679999999999998 8999999999999999988632
Q ss_pred ee-E-----Ee-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 317 LM-S-----FK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 317 ~~-~-----~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.. + +. ....-|.++.|-.++ .|++|..-|+|++||-..+. .+..+..|.+.|.+++.++++ .++.+
T Consensus 190 ~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT----LiqS~~~h~adVl~Lav~~~~-d~vfs 262 (691)
T KOG2048|consen 190 HIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT----LIQSHSCHDADVLALAVADNE-DRVFS 262 (691)
T ss_pred EEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc----hhhhhhhhhcceeEEEEcCCC-CeEEE
Confidence 21 1 11 123346777777655 89999999999999999988 889999999999999999965 89999
Q ss_pred EeCCCcEEEEECCCCC
Q 039302 390 SSADNQLTIWDLSLEK 405 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~ 405 (479)
+|.|+.|..|.+....
T Consensus 263 aGvd~~ii~~~~~~~~ 278 (691)
T KOG2048|consen 263 AGVDPKIIQYSLTTNK 278 (691)
T ss_pred ccCCCceEEEEecCCc
Confidence 9999999999887764
No 152
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=3.3e-19 Score=179.14 Aligned_cols=228 Identities=18% Similarity=0.285 Sum_probs=179.2
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
|...|.+++... ..|++|+.+++|.+|.+.. ...-..+....-++.+++++.+|.
T Consensus 55 ~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps---------------------~~~~~iL~Rftlp~r~~~v~g~g~- 109 (933)
T KOG1274|consen 55 SGELVSSIACYS---NHFLTGSEQNTVLRYKFPS---------------------GEEDTILARFTLPIRDLAVSGSGK- 109 (933)
T ss_pred cCceeEEEeecc---cceEEeeccceEEEeeCCC---------------------CCccceeeeeeccceEEEEecCCc-
Confidence 667777777654 4677899999999999987 333333444466899999999998
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe------
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK------ 321 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~------ 321 (479)
.+|.|+.|-.|++-++.+... ...+.+|.++|.+|.|+|++. +||+.+.||.|+|||+.++. +..++.
T Consensus 110 ~iaagsdD~~vK~~~~~D~s~----~~~lrgh~apVl~l~~~p~~~-fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n 183 (933)
T KOG1274|consen 110 MIAAGSDDTAVKLLNLDDSSQ----EKVLRGHDAPVLQLSYDPKGN-FLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDN 183 (933)
T ss_pred EEEeecCceeEEEEeccccch----heeecccCCceeeeeEcCCCC-EEEEEecCceEEEEEcccch-hhhhcccCCccc
Confidence 999999999999999987655 356889999999999999999 99999999999999999874 222221
Q ss_pred -c-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 322 -A-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 322 -~-h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
. ....++.++|+|++ ..||..+.|+.|++|+..... +...+.. |...+..++|+|+ |.+||+++.||.|.
T Consensus 184 ~~~~s~i~~~~aW~Pk~-g~la~~~~d~~Vkvy~r~~we----~~f~Lr~~~~ss~~~~~~wsPn-G~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 184 EFILSRICTRLAWHPKG-GTLAVPPVDNTVKVYSRKGWE----LQFKLRDKLSSSKFSDLQWSPN-GKYIAASTLDGQIL 257 (933)
T ss_pred cccccceeeeeeecCCC-CeEEeeccCCeEEEEccCCce----eheeecccccccceEEEEEcCC-CcEEeeeccCCcEE
Confidence 1 14567889999998 456666778999999999887 4555543 4555999999996 59999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
|||..+.. .|.....|.+++|.|+.+.+-+....+
T Consensus 258 vWnv~t~~----------------------------~~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 258 VWNVDTHE----------------------------RHEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred EEecccch----------------------------hccccceeEEEecCCCCCeeEEEeecc
Confidence 99998631 144445799999999987655554444
No 153
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=1.2e-19 Score=162.66 Aligned_cols=216 Identities=19% Similarity=0.299 Sum_probs=162.8
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe---cCCCCce
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF---GGHKDEG 236 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v 236 (479)
.+...+++|-+.||.|+++|..+++++++|.|..|++|++++ ..++..| .||.++|
T Consensus 126 ~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~---------------------~~Cv~VfGG~egHrdeV 184 (385)
T KOG1034|consen 126 QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQT---------------------DVCVAVFGGVEGHRDEV 184 (385)
T ss_pred hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccC---------------------CeEEEEecccccccCcE
Confidence 444578999999999999999999999999999999999998 5666665 4699999
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc------------------ccCCC------CcccCCCcEEEEEECCCC
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW------------------NVDPN------PFIGHAASVEDLQWSPTE 292 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~------------------~~~~~------~~~~h~~~V~~l~~sp~~ 292 (479)
.+++|++++. +|+||+.|.+|++|++.....+ ..... ...-|...|-|+.|- |
T Consensus 185 LSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g 261 (385)
T KOG1034|consen 185 LSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G 261 (385)
T ss_pred EEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h
Confidence 9999999998 9999999999999999742110 00000 123477788888887 4
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCc-------------eeeEEecCCCCEEEE--EEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 293 SDVFASCSVDGNIAIWDTRVGKS-------------ALMSFKAHNADVNVI--SWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 293 ~~~l~s~s~dg~I~iwD~~~~~~-------------~~~~~~~h~~~v~~l--~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
. ++++-|.++.|..|-.-.... .+..+.-....|.-| +|+|-+ .+||.|...|.|.+|||++.
T Consensus 262 d-~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ 339 (385)
T KOG1034|consen 262 D-FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNN 339 (385)
T ss_pred h-heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCC
Confidence 4 899999999999998721110 122233334455544 456767 89999999999999999998
Q ss_pred CCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 358 KGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 358 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
.+......+-......|...+|+.++ .+|+..+.|++|.-||--
T Consensus 340 ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 340 EPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence 75222222222235679999999854 899999999999999853
No 154
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.5e-18 Score=154.51 Aligned_cols=233 Identities=15% Similarity=0.293 Sum_probs=173.9
Q ss_pred CceeEEEEecCCcceeEEEEecCC-CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQN-PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
+-.+......|.+.|.+|.|.+-. ..++|+++.|++|.||.-.... ... .........++......|
T Consensus 48 ~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~--~~~----------~~~~Wv~~ttl~DsrssV 115 (361)
T KOG2445|consen 48 TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKS--EEA----------HGRRWVRRTTLVDSRSSV 115 (361)
T ss_pred ceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccc--ccc----------ccceeEEEEEeecCCcce
Confidence 444556788999999999997642 5899999999999999864210 000 001244556777778899
Q ss_pred EEEEeCCCCCC-eEEEEeCCCeEEEEecCCCC---cccc------CCCCcccCCCcEEEEEECCCC--CcEEEEEeCC--
Q 039302 237 YAIDWNPVAPG-RLVSGDCNSCIHLWEPASDA---TWNV------DPNPFIGHAASVEDLQWSPTE--SDVFASCSVD-- 302 (479)
Q Consensus 237 ~~l~~s~~~~~-~l~sg~~dg~I~lwd~~~~~---~~~~------~~~~~~~h~~~V~~l~~sp~~--~~~l~s~s~d-- 302 (479)
+.+.|.|...| .||+++.||.++||+.-... .|.+ ...+...+..+..|+.|+|.. ..+||.|+.+
T Consensus 116 ~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a 195 (361)
T KOG2445|consen 116 TDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDA 195 (361)
T ss_pred eEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCC
Confidence 99999998766 79999999999999875432 2221 112233567788999999753 2378888866
Q ss_pred ---CcEEEEEcCCCCc---eeeEEecCCCCEEEEEEcCCCC---cEEEEEeCCCeEEEEeCCCCCC--------------
Q 039302 303 ---GNIAIWDTRVGKS---ALMSFKAHNADVNVISWNRLAS---CLLASGSDDGTFSIHDLRLLKG-------------- 359 (479)
Q Consensus 303 ---g~I~iwD~~~~~~---~~~~~~~h~~~v~~l~~~p~~~---~~l~sgs~dg~i~iwDlr~~~~-------------- 359 (479)
+.+.||....... .+..+..|..+|+.|+|.|+-+ .+||+++.|| |+||.++....
T Consensus 196 ~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~ 274 (361)
T KOG2445|consen 196 PHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMT 274 (361)
T ss_pred ccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcc
Confidence 5789998766532 3445678999999999999743 5899999999 99999984221
Q ss_pred --CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 360 --GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 360 --~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.-..+..+..|.+.|+.+.|+-.+ .+|++.|.||+|++|.....
T Consensus 275 ~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany~ 320 (361)
T KOG2445|consen 275 DLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANYN 320 (361)
T ss_pred ccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhhh
Confidence 013456678899999999999865 99999999999999987654
No 155
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=1.5e-19 Score=165.58 Aligned_cols=217 Identities=17% Similarity=0.272 Sum_probs=171.0
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..+|+++|..+.|+|.+.+.||+||+|.+|.||++........ ...|+..+.||...|.-++|+|.
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~--------------ltepvv~L~gH~rrVg~V~wHPt 142 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD--------------LTEPVVELYGHQRRVGLVQWHPT 142 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC--------------cccceEEEeecceeEEEEeeccc
Confidence 3599999999999999999999999999999999987432211 25788899999999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
..+.|+|++.|.+|.+||+.++.... .+. |...|.++.|+.+|. +|++.+.|+.|||||.|++. .+..-.+|.
T Consensus 143 A~NVLlsag~Dn~v~iWnv~tgeali----~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~-~v~e~~~he 215 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGTGEALI----TLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGT-VVSEGVAHE 215 (472)
T ss_pred chhhHhhccCCceEEEEeccCCceee----ecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCc-Eeeeccccc
Confidence 99899999999999999999876533 233 999999999999999 99999999999999999986 555555665
Q ss_pred C-CEEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 325 A-DVNVISWNRLASCLLASGS---DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 325 ~-~v~~l~~~p~~~~~l~sgs---~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
+ .-..+.|-.++ .++-||- .+..+-+||..+...+ -....+.. +..|.---|.|+..-+.++|-.|+.|+.|.
T Consensus 216 G~k~~Raifl~~g-~i~tTGfsr~seRq~aLwdp~nl~eP-~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 216 GAKPARAIFLASG-KIFTTGFSRMSERQIALWDPNNLEEP-IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred CCCcceeEEeccC-ceeeeccccccccceeccCcccccCc-ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 4 34566777777 5555543 3568999999988762 12333443 455666668886644455556699999999
Q ss_pred CCCCC
Q 039302 401 LSLEK 405 (479)
Q Consensus 401 l~~~~ 405 (479)
+....
T Consensus 293 it~d~ 297 (472)
T KOG0303|consen 293 ITNEP 297 (472)
T ss_pred ecCCC
Confidence 98763
No 156
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=1.6e-18 Score=154.52 Aligned_cols=249 Identities=19% Similarity=0.226 Sum_probs=191.9
Q ss_pred CCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCC
Q 039302 50 EGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNK 129 (479)
Q Consensus 50 ~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~ 129 (479)
+|.-..||-..-++.-.+.++-|-|.+-+.++.. ++.| .-++.|.++++..
T Consensus 34 DgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~------------~~~G-----~~dg~vr~~Dln~------------ 84 (323)
T KOG1036|consen 34 DGSLRLYDVPANSLKLKFKHGAPLLDCAFADEST------------IVTG-----GLDGQVRRYDLNT------------ 84 (323)
T ss_pred cCcEEEEeccchhhhhheecCCceeeeeccCCce------------EEEe-----ccCceEEEEEecC------------
Confidence 5666777877778889999999999999998632 5555 4789999998831
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCccccccc
Q 039302 130 PATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAES 209 (479)
Q Consensus 130 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~ 209 (479)
. -..++-.|..+|.||.+++.. ..+++||.|++|++||...
T Consensus 85 ----------------------------~--~~~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~-------- 125 (323)
T KOG1036|consen 85 ----------------------------G--NEDQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRN-------- 125 (323)
T ss_pred ----------------------------C--cceeeccCCCceEEEEeeccC-CeEEEcccCccEEEEeccc--------
Confidence 0 012566899999999999866 6778999999999999885
Q ss_pred ccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC
Q 039302 210 ETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS 289 (479)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 289 (479)
.....++. ....|++++.+- . +|+.|..+..|.+||+++..... ...-..-+-.+.||++-
T Consensus 126 -------------~~~~~~~d-~~kkVy~~~v~g--~-~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~ 186 (323)
T KOG1036|consen 126 -------------KVVVGTFD-QGKKVYCMDVSG--N-RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALV 186 (323)
T ss_pred -------------cccccccc-cCceEEEEeccC--C-EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEe
Confidence 22233332 234899998764 3 89999999999999998765432 12223345678999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCC---ceeeEEecCCC---------CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 290 PTESDVFASCSVDGNIAIWDTRVGK---SALMSFKAHNA---------DVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 290 p~~~~~l~s~s~dg~I~iwD~~~~~---~~~~~~~~h~~---------~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
|++. -++++|.||.|.+=.+.... .....|+.|.. +||+|+|+|-. ..||||+.||.|.+||+.+.
T Consensus 187 pn~e-Gy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 187 PNGE-GYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred cCCC-ceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcch
Confidence 9777 78999999999887666541 13345666643 79999999987 89999999999999999988
Q ss_pred CCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 358 KGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 358 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
+ .+..+......|.+++|+-++ ..||+++.
T Consensus 265 K----rl~q~~~~~~SI~slsfs~dG-~~LAia~s 294 (323)
T KOG1036|consen 265 K----RLKQLAKYETSISSLSFSMDG-SLLAIASS 294 (323)
T ss_pred h----hhhhccCCCCceEEEEeccCC-CeEEEEec
Confidence 7 577777777889999999855 88888874
No 157
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.5e-18 Score=169.11 Aligned_cols=237 Identities=17% Similarity=0.225 Sum_probs=181.4
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~ 247 (479)
+.+|.+++|+.+. +.||.+-.+|.|.||++.. ..-....+.++. ..|-+|+|++.+
T Consensus 25 Ps~I~slA~s~kS-~~lAvsRt~g~IEiwN~~~--------------------~w~~~~vi~g~~drsIE~L~W~e~~-- 81 (691)
T KOG2048|consen 25 PSEIVSLAYSHKS-NQLAVSRTDGNIEIWNLSN--------------------NWFLEPVIHGPEDRSIESLAWAEGG-- 81 (691)
T ss_pred ccceEEEEEeccC-CceeeeccCCcEEEEccCC--------------------CceeeEEEecCCCCceeeEEEccCC--
Confidence 5899999999988 6688889999999999988 244455666665 489999999544
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce-eeEEecCCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-LMSFKAHNAD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-~~~~~~h~~~ 326 (479)
+|.|.+.+|.|.-||+.+.... ..+....+.|.+++.+|.+. .++.|+.||.+.++++....-. ...+....+.
T Consensus 82 RLFS~g~sg~i~EwDl~~lk~~----~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sR 156 (691)
T KOG2048|consen 82 RLFSSGLSGSITEWDLHTLKQK----YNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSR 156 (691)
T ss_pred eEEeecCCceEEEEecccCcee----EEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccce
Confidence 8999999999999999886542 34556678999999999998 8999999997777777665311 1223445688
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-----ec---CCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-----EY---HKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-----~~---h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
|.+++|+|++ ..|++|+.||.|++||...+.. +... .. -..-|++|.|-. + ..|++|..-|+|.+
T Consensus 157 vLslsw~~~~-~~i~~Gs~Dg~Iriwd~~~~~t----~~~~~~~~d~l~k~~~~iVWSv~~Lr-d-~tI~sgDS~G~V~F 229 (691)
T KOG2048|consen 157 VLSLSWNPTG-TKIAGGSIDGVIRIWDVKSGQT----LHIITMQLDRLSKREPTIVWSVLFLR-D-STIASGDSAGTVTF 229 (691)
T ss_pred EEEEEecCCc-cEEEecccCceEEEEEcCCCce----EEEeeecccccccCCceEEEEEEEee-c-CcEEEecCCceEEE
Confidence 9999999999 8899999999999999998873 3311 11 223477888874 3 78999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCCceEE
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADGFNIL 465 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dgi~iw 465 (479)
||...+. ++..|..| ..|.+++-.+++..++++|.+..+.-|
T Consensus 230 Wd~~~gT-------------------------LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~ 272 (691)
T KOG2048|consen 230 WDSIFGT-------------------------LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQY 272 (691)
T ss_pred EcccCcc-------------------------hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEE
Confidence 9998873 34444433 479999999998755555555534333
No 158
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.83 E-value=8.2e-18 Score=158.71 Aligned_cols=240 Identities=17% Similarity=0.288 Sum_probs=184.3
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
.-|.|++|.+++ . ++||.++|.|.||+... .+.......|.+.|++|....+| .|
T Consensus 247 k~Vl~v~F~eng-d-viTgDS~G~i~Iw~~~~---------------------~~~~k~~~aH~ggv~~L~~lr~G--tl 301 (626)
T KOG2106|consen 247 KFVLCVTFLENG-D-VITGDSGGNILIWSKGT---------------------NRISKQVHAHDGGVFSLCMLRDG--TL 301 (626)
T ss_pred eEEEEEEEcCCC-C-EEeecCCceEEEEeCCC---------------------ceEEeEeeecCCceEEEEEecCc--cE
Confidence 679999999999 3 55999999999999866 23333444899999999998887 68
Q ss_pred EEEeCCCeEEEEecCCCCc-----------ccc-------------------------CCCCcccCCCcEEEEEECCCCC
Q 039302 250 VSGDCNSCIHLWEPASDAT-----------WNV-------------------------DPNPFIGHAASVEDLQWSPTES 293 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~-----------~~~-------------------------~~~~~~~h~~~V~~l~~sp~~~ 293 (479)
+||+.|..|.+||-.-... ..+ ......+|......++.+|...
T Consensus 302 lSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~ 381 (626)
T KOG2106|consen 302 LSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN 381 (626)
T ss_pred eecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh
Confidence 8899999999998321110 000 0011246888889999999988
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP 373 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~ 373 (479)
.|++|+.|+.++||+ .. ++..+ ..-..++.|+.|+|.+ .+|.|+..|...+.|..+.. .+. +.....+
T Consensus 382 -q~~T~gqdk~v~lW~--~~-k~~wt-~~~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~----lv~-~~~d~~~ 449 (626)
T KOG2106|consen 382 -QLLTCGQDKHVRLWN--DH-KLEWT-KIIEDPAECADFHPSG--VVAVGTATGRWFVLDTETQD----LVT-IHTDNEQ 449 (626)
T ss_pred -heeeccCcceEEEcc--CC-ceeEE-EEecCceeEeeccCcc--eEEEeeccceEEEEecccce----eEE-EEecCCc
Confidence 999999999999999 22 23332 3345678999999988 89999999999999999855 343 4444899
Q ss_pred eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
++.|+|+|++ .+||.|+.|+.|+||.++..... ...+-.|.| ..|+.+.|++++. +
T Consensus 450 ls~v~ysp~G-~~lAvgs~d~~iyiy~Vs~~g~~---------------------y~r~~k~~g-s~ithLDwS~Ds~-~ 505 (626)
T KOG2106|consen 450 LSVVRYSPDG-AFLAVGSHDNHIYIYRVSANGRK---------------------YSRVGKCSG-SPITHLDWSSDSQ-F 505 (626)
T ss_pred eEEEEEcCCC-CEEEEecCCCeEEEEEECCCCcE---------------------EEEeeeecC-ceeEEeeecCCCc-e
Confidence 9999999965 99999999999999999876421 233445666 7899999999986 6
Q ss_pred EEEEcCCC-ceEEeeecc
Q 039302 454 IVSTAADG-FNILMPSNI 470 (479)
Q Consensus 454 l~s~~~dg-i~iw~~~~~ 470 (479)
+.+-+.|- |..|++...
T Consensus 506 ~~~~S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 506 LVSNSGDYEILYWKPSEC 523 (626)
T ss_pred EEeccCceEEEEEccccC
Confidence 77777666 888855433
No 159
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.1e-19 Score=173.75 Aligned_cols=223 Identities=19% Similarity=0.384 Sum_probs=181.0
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+.+.+..|...|..+.|.|..+ .|++++.||++.+|+++..... .....+++.+|.+|.++|.|++
T Consensus 286 ik~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s-------------~~~~~epi~tfraH~gPVl~v~ 351 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKS-------------AEKDVEPILTFRAHEGPVLCVV 351 (577)
T ss_pred eeeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCc-------------cccceeeeEEEecccCceEEEE
Confidence 3457889999999999999884 6779999999999999541110 1124689999999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCC------CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASD------ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~------~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
..+.+. .+++|+-||+|+.|++... ....+....+.||+..|+.+++|+... .|++|+.||++++|+.....
T Consensus 352 v~~n~~-~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~ 429 (577)
T KOG0642|consen 352 VPSNGE-HCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEES 429 (577)
T ss_pred ecCCce-EEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcC
Confidence 999998 9999999999999976522 112233466889999999999999877 79999999999999875432
Q ss_pred cee-------------------------------------------eEEe-------cCCCCEEEEEEcCCCCcEEEEEe
Q 039302 315 SAL-------------------------------------------MSFK-------AHNADVNVISWNRLASCLLASGS 344 (479)
Q Consensus 315 ~~~-------------------------------------------~~~~-------~h~~~v~~l~~~p~~~~~l~sgs 344 (479)
.+. ..+. .....++.+.++|.. .+.+++.
T Consensus 430 ~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~-~~~~~~h 508 (577)
T KOG0642|consen 430 PCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTA-DITFTAH 508 (577)
T ss_pred ccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCC-CeeEecc
Confidence 100 0000 011347788899988 8999999
Q ss_pred CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 345 ~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.|+.|+++|..++. ++.....|...++++++.|++ .+|++++.|+.|++|.+....
T Consensus 509 ed~~Ir~~dn~~~~----~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~ 564 (577)
T KOG0642|consen 509 EDRSIRFFDNKTGK----ILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKT 564 (577)
T ss_pred cCCceecccccccc----cchheeeccceecceeecCCC-ceEEeecCCceeehhhccchh
Confidence 99999999999998 899999999999999999965 999999999999999997654
No 160
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=1.2e-18 Score=160.42 Aligned_cols=270 Identities=19% Similarity=0.283 Sum_probs=185.0
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.....+..|...||+|+|+|+| .++|+|+++|.|.+|......-.. ... ..............+.+|..+|+.+
T Consensus 56 ~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~lWk~~~~~~~~--~d~---e~~~~ke~w~v~k~lr~h~~diydL 129 (434)
T KOG1009|consen 56 EYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFLWKQGDVRIFD--ADT---EADLNKEKWVVKKVLRGHRDDIYDL 129 (434)
T ss_pred EEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEEEEecCcCCcc--ccc---hhhhCccceEEEEEecccccchhhh
Confidence 3345688999999999999999 899999999999999877410000 000 0000011244556788999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--ee
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--AL 317 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~~ 317 (479)
+|+|++. ++++|+.|..+++||+..+.. ...+..|...|..++|.|-++ ++++-+.|...+++.+...+. .+
T Consensus 130 ~Ws~d~~-~l~s~s~dns~~l~Dv~~G~l----~~~~~dh~~yvqgvawDpl~q-yv~s~s~dr~~~~~~~~~~~~~~~~ 203 (434)
T KOG1009|consen 130 AWSPDSN-FLVSGSVDNSVRLWDVHAGQL----LAILDDHEHYVQGVAWDPLNQ-YVASKSSDRHPEGFSAKLKQVIKRH 203 (434)
T ss_pred hccCCCc-eeeeeeccceEEEEEecccee----Eeeccccccccceeecchhhh-hhhhhccCcccceeeeeeeeeeeee
Confidence 9999998 999999999999999988755 355788999999999999998 899999898777777654321 00
Q ss_pred e--EE---e-----------cCC----CCEEEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCCCCCCceEEEee
Q 039302 318 M--SF---K-----------AHN----ADVNVISWNRLASCLLASGSD---------DGTFSIHDLRLLKGGDSVVAHFE 368 (479)
Q Consensus 318 ~--~~---~-----------~h~----~~v~~l~~~p~~~~~l~sgs~---------dg~i~iwDlr~~~~~~~~~~~~~ 368 (479)
. .+ . -|. .-...++|+|+| .+|++.+. -++.++|+....+. |+..+.
T Consensus 204 ~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG-~llvtPag~~~~g~~~~~n~tYvfsrk~l~r---P~~~lp 279 (434)
T KOG1009|consen 204 GLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDG-SLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR---PAARLP 279 (434)
T ss_pred eeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCC-cEEEcccceeeeCCceeeceeEeeccccccC---ceeecC
Confidence 0 00 0 011 124568899999 77777532 12346676665554 777887
Q ss_pred cCCCCeEEEEEeCC-----------------CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCce
Q 039302 369 YHKHPVTSIEWSPH-----------------EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQL 431 (479)
Q Consensus 369 ~h~~~I~~v~~sp~-----------------~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l 431 (479)
.-..++..+.|+|- ...++|.++ -+.|+|||...... -..+
T Consensus 280 ~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P---------------------~~~v 337 (434)
T KOG1009|consen 280 SPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEP---------------------LAVV 337 (434)
T ss_pred CCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccc---------------------eEEE
Confidence 77777777777762 112455555 56799999876521 0122
Q ss_pred EEeecCCCCeeeEEEeCCCCcEEEEEcCCC---ceEEeeecc
Q 039302 432 LFIHQGQKDLKELHWHTQVPGMIVSTAADG---FNILMPSNI 470 (479)
Q Consensus 432 ~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg---i~iw~~~~~ 470 (479)
-.+|- ..|++++|++++..+ +.++.|| +.-|..+.+
T Consensus 338 ~nihy--~~iTDiaws~dg~~l-~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 338 DNIHY--SAITDIAWSDDGSVL-LVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eeeee--eeecceeecCCCcEE-EEeccCCceEEEEEcchhc
Confidence 23343 579999999999744 4455566 444444444
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=3.6e-19 Score=159.67 Aligned_cols=251 Identities=16% Similarity=0.268 Sum_probs=186.1
Q ss_pred CCcceeEEEEecC---CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 168 HQGCVNRIRAMSQ---NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 168 H~~~V~~v~~~p~---~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
|......++|+-+ +.-++|.|+.-|.|+|.|+.+ .+....+.+|...|+.+.+.|.
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~---------------------~~~~~~~~ghG~sINeik~~p~ 146 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS---------------------GQCSKNYRGHGGSINEIKFHPD 146 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecch---------------------hhhccceeccCccchhhhcCCC
Confidence 3344555566543 235777778999999999987 6777889999999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---------
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--------- 315 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--------- 315 (479)
.+.++++|+.|..|++|++++... .....-+.+|...|.++.|++++. .|++|+.|.+|++|++....-
T Consensus 147 ~~qlvls~SkD~svRlwnI~~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~ 224 (385)
T KOG1034|consen 147 RPQLVLSASKDHSVRLWNIQTDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSIT 224 (385)
T ss_pred CCcEEEEecCCceEEEEeccCCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcc
Confidence 988999999999999999988654 333456789999999999999999 999999999999999984310
Q ss_pred -----------------ee-eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC----------CCceEEEe
Q 039302 316 -----------------AL-MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG----------GDSVVAHF 367 (479)
Q Consensus 316 -----------------~~-~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~----------~~~~~~~~ 367 (479)
+. .+...|...|.|+.|-- .++++-|-++.|..|-.-.... ....+..+
T Consensus 225 ~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~ 301 (385)
T KOG1034|consen 225 YSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEF 301 (385)
T ss_pred cCCCCccCcCCccccccccccccccccchHHHHHHHh---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEe
Confidence 00 02245777788888763 7899999999999998732211 12345556
Q ss_pred ecCCCCeEEEEE--eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-cCCCCeeeE
Q 039302 368 EYHKHPVTSIEW--SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-QGQKDLKEL 444 (479)
Q Consensus 368 ~~h~~~I~~v~~--sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-~g~~~V~~v 444 (479)
......|+-|.| .|.. .+||.|...|.|.+|||+..... .+....| .+...|...
T Consensus 302 ~~~~c~iWfirf~~d~~~-~~la~gnq~g~v~vwdL~~~ep~---------------------~~ttl~~s~~~~tVRQ~ 359 (385)
T KOG1034|consen 302 DYPMCDIWFIRFAFDPWQ-KMLALGNQSGKVYVWDLDNNEPP---------------------KCTTLTHSKSGSTVRQT 359 (385)
T ss_pred ccCccceEEEEEeecHHH-HHHhhccCCCcEEEEECCCCCCc---------------------cCceEEeccccceeeee
Confidence 666667776655 5644 89999999999999999987421 1222333 333469999
Q ss_pred EEeCCCCcEEEEEcCCCceEEeee
Q 039302 445 HWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 445 ~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+|+.++..+++.+.+. .||+..
T Consensus 360 sfS~dgs~lv~vcdd~--~Vwrwd 381 (385)
T KOG1034|consen 360 SFSRDGSILVLVCDDG--TVWRWD 381 (385)
T ss_pred eecccCcEEEEEeCCC--cEEEEE
Confidence 9999997555555555 556543
No 162
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.83 E-value=2.6e-19 Score=174.86 Aligned_cols=215 Identities=19% Similarity=0.256 Sum_probs=177.2
Q ss_pred EEEecCCcceeEEEEecCC--CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQN--PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+|..+|.|+.|+... ..+||+++.|..|+|||+.. +..++.++.+|+..|+++.
T Consensus 495 ~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~r--------------------ny~l~qtld~HSssITsvK 554 (1080)
T KOG1408|consen 495 CFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKR--------------------NYDLVQTLDGHSSSITSVK 554 (1080)
T ss_pred hheecccceeEEEeecCchhhhHhhhhccCCceEEEEeccc--------------------ccchhhhhcccccceeEEE
Confidence 3566899999999998743 58999999999999999988 4778899999999999999
Q ss_pred eCCCCCC-eEEEEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 241 WNPVAPG-RLVSGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 241 ~s~~~~~-~l~sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
|...+-+ ++++++.|..|.+--.+....-.. ......-....+.+++..|+.+ ++++++.|+.|+|||+..++ ...
T Consensus 555 Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k-~v~t~cQDrnirif~i~sgK-q~k 632 (1080)
T KOG1408|consen 555 FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSK-LVVTVCQDRNIRIFDIESGK-QVK 632 (1080)
T ss_pred EeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcc-eEEEEecccceEEEeccccc-eee
Confidence 9987732 899999998875533322111110 0011111234689999999999 99999999999999999986 455
Q ss_pred EE---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 319 SF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 319 ~~---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
.| ..|.+....+...|.+ .+||+.+.|.++.++|.-++. ++..+.+|...|+.+.|.++. ..|++.+.||+
T Consensus 633 ~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgE----cvA~m~GHsE~VTG~kF~nDC-kHlISvsgDgC 706 (1080)
T KOG1408|consen 633 SFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGE----CVAQMTGHSEAVTGVKFLNDC-KHLISVSGDGC 706 (1080)
T ss_pred eecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccch----hhhhhcCcchheeeeeecccc-hhheeecCCce
Confidence 56 4567788899999999 999999999999999999998 899999999999999999977 89999999999
Q ss_pred EEEEECCCCC
Q 039302 396 LTIWDLSLEK 405 (479)
Q Consensus 396 I~iwdl~~~~ 405 (479)
|.||.+....
T Consensus 707 IFvW~lp~~m 716 (1080)
T KOG1408|consen 707 IFVWKLPLTM 716 (1080)
T ss_pred EEEEECchhH
Confidence 9999998753
No 163
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.82 E-value=2.2e-17 Score=158.06 Aligned_cols=200 Identities=12% Similarity=0.134 Sum_probs=140.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.+..+.|+|++..++++++.++.|++||+.. .+.+..+.. ...+.+++|+|++. +++
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~---------------------~~~~~~~~~-~~~~~~~~~~~dg~-~l~ 130 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIET---------------------RKVLAEIPV-GVEPEGMAVSPDGK-IVV 130 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCC---------------------CeEEeEeeC-CCCcceEEECCCCC-EEE
Confidence 3567899999966777777789999999986 334444432 23467899999998 888
Q ss_pred EEeCCC-eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC-----
Q 039302 251 SGDCNS-CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN----- 324 (479)
Q Consensus 251 sg~~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~----- 324 (479)
+++.++ .+.+||..+..... .. .....+..++|+|++..+++++..++.|++||+++.+ .+..+..+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~----~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~ 204 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVD----NV-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHP 204 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEE----EE-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeeeeccccccc
Confidence 888765 56778986643311 11 1223457899999998444566679999999999875 333332221
Q ss_pred --CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE-eCCCcEEEEEC
Q 039302 325 --ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS-SADNQLTIWDL 401 (479)
Q Consensus 325 --~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~-s~Dg~I~iwdl 401 (479)
.....++|+|++..++++.+.++.|.+||+++.+ .+..+ .+...+.+++|+|++ .+|+++ +.++.|.+||+
T Consensus 205 ~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~----~~~~~-~~~~~~~~~~~~~~g-~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 205 EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYE----VLDYL-LVGQRVWQLAFTPDE-KYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCc----EEEEE-EeCCCcceEEECCCC-CEEEEEcCCCCeEEEEEC
Confidence 1234688999995445555667789999998766 44444 345679999999976 666655 56999999999
Q ss_pred CCCC
Q 039302 402 SLEK 405 (479)
Q Consensus 402 ~~~~ 405 (479)
....
T Consensus 279 ~~~~ 282 (300)
T TIGR03866 279 AALK 282 (300)
T ss_pred CCCc
Confidence 9874
No 164
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.82 E-value=7.4e-19 Score=161.15 Aligned_cols=213 Identities=20% Similarity=0.319 Sum_probs=164.9
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc---CCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV---DPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
-.+.||+++|..++|+|.+...||||+.|.+|.||.+..+..... ....+.+|...|--++|+|.-.++|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 346799999999999999988999999999999999977544221 12457899999999999999999999999999
Q ss_pred cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC-eEEEEEeCC
Q 039302 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP-VTSIEWSPH 382 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~-I~~v~~sp~ 382 (479)
+|.||++.++. .+..+. |...|.+++|+.+| .+|++.+.|..|+|||.|.+. .+..-.+|.+. -..+-|-.+
T Consensus 155 ~v~iWnv~tge-ali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~----~v~e~~~heG~k~~Raifl~~ 227 (472)
T KOG0303|consen 155 TVSIWNVGTGE-ALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGT----VVSEGVAHEGAKPARAIFLAS 227 (472)
T ss_pred eEEEEeccCCc-eeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCc----EeeecccccCCCcceeEEecc
Confidence 99999999996 555666 99999999999999 899999999999999999998 77777778763 344556654
Q ss_pred CCCEEEEEe---CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 383 EGSTLAVSS---ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 383 ~~~~las~s---~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
+ .++.||- .+.++-+||-.....+ -.+........|.==-|.|+...+.+.|-.
T Consensus 228 g-~i~tTGfsr~seRq~aLwdp~nl~eP----------------------~~~~elDtSnGvl~PFyD~dt~ivYl~GKG 284 (472)
T KOG0303|consen 228 G-KIFTTGFSRMSERQIALWDPNNLEEP----------------------IALQELDTSNGVLLPFYDPDTSIVYLCGKG 284 (472)
T ss_pred C-ceeeeccccccccceeccCcccccCc----------------------ceeEEeccCCceEEeeecCCCCEEEEEecC
Confidence 4 5554443 3789999998876432 112222222356656677877655555555
Q ss_pred CC-ceEEeeec
Q 039302 460 DG-FNILMPSN 469 (479)
Q Consensus 460 dg-i~iw~~~~ 469 (479)
|+ |+-|.+.+
T Consensus 285 D~~IRYyEit~ 295 (472)
T KOG0303|consen 285 DSSIRYFEITN 295 (472)
T ss_pred CcceEEEEecC
Confidence 65 88777654
No 165
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=3.8e-18 Score=159.45 Aligned_cols=251 Identities=13% Similarity=0.164 Sum_probs=188.4
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.+.|++|.|+|.. .++.+++.||+++||.+.... ...+..+.--..+|.+..|.|+|...
T Consensus 213 ~~~I~sv~FHp~~-plllvaG~d~~lrifqvDGk~-------------------N~~lqS~~l~~fPi~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 213 HGGITSVQFHPTA-PLLLVAGLDGTLRIFQVDGKV-------------------NPKLQSIHLEKFPIQKAEFAPNGHSV 272 (514)
T ss_pred cCCceEEEecCCC-ceEEEecCCCcEEEEEecCcc-------------------ChhheeeeeccCccceeeecCCCceE
Confidence 3789999999988 678889999999999998732 23444555556799999999999878
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+++++....++.||+.+.+...+ .+..++ ...+.....+++++ +++..+..|.|.|.-..++. .+.+++ -.+.|
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~--~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~e-li~s~K-ieG~v 347 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKL--KPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKE-LITSFK-IEGVV 347 (514)
T ss_pred EEecccceEEEEeeccccccccc--cCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhh-hhheee-eccEE
Confidence 99999999999999988655332 333444 35688889999998 99999999999999888875 455554 35679
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC-CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCC
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH-PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKD 406 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~-~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~ 406 (479)
..++|+.++ ..|++++.+|.|.+||++... +++.+.-..+ .-++++.++++ .+||+||..|.|.|||......
T Consensus 348 ~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~----~~~rf~D~G~v~gts~~~S~ng-~ylA~GS~~GiVNIYd~~s~~~ 421 (514)
T KOG2055|consen 348 SDFTFSSDS-KELLASGGTGEVYVWNLRQNS----CLHRFVDDGSVHGTSLCISLNG-SYLATGSDSGIVNIYDGNSCFA 421 (514)
T ss_pred eeEEEecCC-cEEEEEcCCceEEEEecCCcc----eEEEEeecCccceeeeeecCCC-ceEEeccCcceEEEeccchhhc
Confidence 999999988 677777778999999999987 7777764221 23677777855 8999999999999999876531
Q ss_pred hHHHHHHhhhcccccCCCCCCCCceEEe-ecCCCCeeeEEEeCCCCcEEEEEcCCC---ceEEeeecc
Q 039302 407 EEEEAEFKAKTREQVNAPEDLPPQLLFI-HQGQKDLKELHWHTQVPGMIVSTAADG---FNILMPSNI 470 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~-h~g~~~V~~v~w~p~~~~ll~s~~~dg---i~iw~~~~~ 470 (479)
...|+.++. ..-...|++++|+|+.. +||.++... +++..+.+.
T Consensus 422 -------------------s~~PkPik~~dNLtt~Itsl~Fn~d~q-iLAiaS~~~knalrLVHvPS~ 469 (514)
T KOG2055|consen 422 -------------------STNPKPIKTVDNLTTAITSLQFNHDAQ-ILAIASRVKKNALRLVHVPSC 469 (514)
T ss_pred -------------------cCCCCchhhhhhhheeeeeeeeCcchh-hhhhhhhccccceEEEeccce
Confidence 111222222 22235799999999986 555444332 777776554
No 166
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=5.8e-18 Score=151.66 Aligned_cols=259 Identities=16% Similarity=0.284 Sum_probs=179.4
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC-------CC
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN-------PV 244 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-------~~ 244 (479)
...++|+|+|..+| +-+.|..+++|++.............. ....+...+ .....|+...|- |.
T Consensus 52 ~kgckWSPDGSciL-~~sedn~l~~~nlP~dlys~~~~~~~~-------~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~ 122 (406)
T KOG2919|consen 52 LKGCKWSPDGSCIL-SLSEDNCLNCWNLPFDLYSKKADGPLN-------FSKHLSYRY-QEGETVYDYCWYSRMKSDQPS 122 (406)
T ss_pred hccceeCCCCceEE-eecccCeeeEEecChhhcccCCCCccc-------cccceeEEe-ccCCEEEEEEeeeccccCCCc
Confidence 45689999996555 559999999999976433221111000 011122222 123478888886 44
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCC---cEEEEEECCCCCcEEEEEeCCCcEEEEEc-CCCCc-eeeE
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA---SVEDLQWSPTESDVFASCSVDGNIAIWDT-RVGKS-ALMS 319 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~~l~s~s~dg~I~iwD~-~~~~~-~~~~ 319 (479)
.. ++|+.+.+.-|++||.-+++... ....-.|.. ...+++|+|+|. .|++ +...+|++||+ |.+.. ++..
T Consensus 123 t~-l~a~ssr~~PIh~wdaftG~lra--Sy~~ydh~de~taAhsL~Fs~DGe-qlfa-GykrcirvFdt~RpGr~c~vy~ 197 (406)
T KOG2919|consen 123 TN-LFAVSSRDQPIHLWDAFTGKLRA--SYRAYDHQDEYTAAHSLQFSPDGE-QLFA-GYKRCIRVFDTSRPGRDCPVYT 197 (406)
T ss_pred cc-eeeeccccCceeeeecccccccc--chhhhhhHHhhhhheeEEecCCCC-eEee-cccceEEEeeccCCCCCCcchh
Confidence 44 89999999999999998865421 111112322 346899999999 5544 55889999999 65542 2222
Q ss_pred Ee-----cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-C
Q 039302 320 FK-----AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA-D 393 (479)
Q Consensus 320 ~~-----~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~-D 393 (479)
.. +..+-|.+++|+|.....+|.|+....+-||.-.... ++..+.+|.+.|+.++|++++ +.|.+|+. |
T Consensus 198 t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~----pl~llggh~gGvThL~~~edG-n~lfsGaRk~ 272 (406)
T KOG2919|consen 198 TVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR----PLQLLGGHGGGVTHLQWCEDG-NKLFSGARKD 272 (406)
T ss_pred hhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC----ceeeecccCCCeeeEEeccCc-CeecccccCC
Confidence 22 3366789999999997899999999999998877766 899999999999999999976 67777765 8
Q ss_pred CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 394 NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 394 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
..|..||++....+. -.+..|.+.+ .=.-+...|.+. +|++++.+| |++|++....
T Consensus 273 dkIl~WDiR~~~~pv---------------------~~L~rhv~~TNQRI~FDld~~~~-~LasG~tdG~V~vwdlk~~g 330 (406)
T KOG2919|consen 273 DKILCWDIRYSRDPV---------------------YALERHVGDTNQRILFDLDPKGE-ILASGDTDGSVRVWDLKDLG 330 (406)
T ss_pred CeEEEEeehhccchh---------------------hhhhhhccCccceEEEecCCCCc-eeeccCCCccEEEEecCCCC
Confidence 899999999876431 2233343311 112245567774 899999999 9999998853
No 167
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=4.5e-18 Score=170.34 Aligned_cols=233 Identities=19% Similarity=0.343 Sum_probs=175.2
Q ss_pred ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc--
Q 039302 192 GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW-- 269 (479)
Q Consensus 192 g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~-- 269 (479)
+.+.||++.. ...|...+.. ..+|.|+.|+|..+.+||.|..+|.|.+||++.....
T Consensus 222 ~~~~vW~~~~--------------------p~~Pe~~~~~-~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~ 280 (555)
T KOG1587|consen 222 GVLLVWSLKN--------------------PNTPELVLES-PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP 280 (555)
T ss_pred ceEEEEecCC--------------------CCCceEEEec-CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC
Confidence 4788999987 3566666653 5589999999999989999999999999999876552
Q ss_pred ccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCceeeEE----e-------cCCCCEEEEEEcCCCC
Q 039302 270 NVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGKSALMSF----K-------AHNADVNVISWNRLAS 337 (479)
Q Consensus 270 ~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~~~~~~~----~-------~h~~~v~~l~~~p~~~ 337 (479)
.........|..+|..+.|..+.. +-|+++|.||.|..|+++....++... . .....++++.|.+..+
T Consensus 281 s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p 360 (555)
T KOG1587|consen 281 SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP 360 (555)
T ss_pred cccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCC
Confidence 222233456899999999966433 258999999999999998764322221 1 1234689999999999
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCC----ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHH
Q 039302 338 CLLASGSDDGTFSIHDLRLLKGGD----SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEF 413 (479)
Q Consensus 338 ~~l~sgs~dg~i~iwDlr~~~~~~----~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~ 413 (479)
+.++.|++.|.|.--......... .....+..|.++|+++.++|.....|++++ |-+|+||.......
T Consensus 361 ~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~------- 432 (555)
T KOG1587|consen 361 NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIAS------- 432 (555)
T ss_pred ceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCC-------
Confidence 999999999998874444333211 235567779999999999999877888877 99999999874321
Q ss_pred hhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 414 KAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 414 ~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
| ++.....-..|++++|+|..|.+++++..+| +.||++..
T Consensus 433 --------------P--l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 433 --------------P--LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred --------------c--chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 1 1111111134999999999999999999998 99999854
No 168
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=5.7e-19 Score=167.94 Aligned_cols=174 Identities=21% Similarity=0.280 Sum_probs=141.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE-EecCCCCceEEEEe
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-KFGGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~ 241 (479)
..+.||+|.|||+.|+.+| .+|++||+|-.+.|||.-. .+++. .-.||...|+++.|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~---------------------~KllhsI~TgHtaNIFsvKF 101 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFE---------------------YKLLHSISTGHTANIFSVKF 101 (758)
T ss_pred hhhccccceecceeecCCC-CEEeecCCcceEEeecchh---------------------cceeeeeecccccceeEEee
Confidence 4678999999999999999 7999999999999999876 34444 34689999999999
Q ss_pred CCCCCC-eEEEEeCCCeEEEEecCCCCc------cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 242 NPVAPG-RLVSGDCNSCIHLWEPASDAT------WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 242 s~~~~~-~l~sg~~dg~I~lwd~~~~~~------~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
-|...+ +++||..|..|+++|+...+. .......+..|...|..|+-.|.+++.|-+++.||+|+-+|+|...
T Consensus 102 vP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph 181 (758)
T KOG1310|consen 102 VPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPH 181 (758)
T ss_pred eccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCc
Confidence 997554 788999999999999975221 1222355778999999999999999999999999999999999864
Q ss_pred ceeeEE---------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 315 SALMSF---------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 315 ~~~~~~---------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
.+.... ...--...|+..+|..+.+||+|+.|-..++||.|...
T Consensus 182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~l 234 (758)
T KOG1310|consen 182 VCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVL 234 (758)
T ss_pred cCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhc
Confidence 322221 12223567999999999999999999999999976543
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.80 E-value=1.8e-18 Score=156.10 Aligned_cols=216 Identities=22% Similarity=0.340 Sum_probs=164.8
Q ss_pred EEEecCCcceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~ 240 (479)
..+.+|+..+|.++|... +++.+.+|+.||+|++||+... ...+...+..|. .+-.+++
T Consensus 64 ~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~-------------------~e~a~~~~~~~~~~~f~~ld 124 (376)
T KOG1188|consen 64 EEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQ-------------------AESARISWTQQSGTPFICLD 124 (376)
T ss_pred heecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecc-------------------hhhhheeccCCCCCcceEee
Confidence 356788999999999885 6789999999999999999884 234445566666 4777888
Q ss_pred eCCCCCCeEEEEe----CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-
Q 039302 241 WNPVAPGRLVSGD----CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS- 315 (479)
Q Consensus 241 ~s~~~~~~l~sg~----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~- 315 (479)
.+-.+. ++++|. .+-.|.+||++..+... ..-...|...|++|+|+|..+++|++||.||.|.|||+.....
T Consensus 125 ~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l--~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 125 LNCKKN-IIACGTELTRSDASVVLWDVRSEQQLL--RQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred ccCcCC-eEEeccccccCceEEEEEEeccccchh--hhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 876665 777775 35689999998865522 2446789999999999999999999999999999999987632
Q ss_pred -eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------------------------------
Q 039302 316 -ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---------------------------------- 360 (479)
Q Consensus 316 -~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---------------------------------- 360 (479)
.+.....|...|.++.|...+-..|.+-+..++..+|++..+...
T Consensus 202 DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~ 281 (376)
T KOG1188|consen 202 DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTC 281 (376)
T ss_pred hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceE
Confidence 444455677889999998877567888888899999988755421
Q ss_pred -----------------------CceEEEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 361 -----------------------DSVVAHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 361 -----------------------~~~~~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
...+..+.+ |..-|+++.|.-.+ .++.|||+||.+.+|..
T Consensus 282 ~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~-~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 282 ALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKN-DVLYTGGEDGLLQAWKV 345 (376)
T ss_pred EEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhccc-ceeeccCCCceEEEEec
Confidence 011122222 44556777777644 89999999999999985
No 170
>PF12265 CAF1C_H4-bd: Histone-binding protein RBBP4 or subunit C of CAF1 complex; InterPro: IPR022052 The CAF-1 complex is a conserved heterotrimeric protein complex that promotes histone H3 and H4 deposition onto newly synthesized DNA during replication or DNA repair; specifically it facilitates replication-dependent nucleosome assembly with the major histone H3 (H3.1). This domain is an alpha helix which sits just upstream of the WD40 seven-bladed beta-propeller in the human RbAp46 protein. RbAp46 folds into the beta-propeller and binds histone H4 in a groove formed between this N-terminal helix and an extended loop inserted into blade six []. ; PDB: 2YBA_A 3C99_A 2YB8_B 2XYI_A 3C9C_A 3CFV_B 3CFS_B 2XU7_A 3GFC_A.
Probab=99.79 E-value=6.2e-21 Score=139.48 Aligned_cols=69 Identities=42% Similarity=0.670 Sum_probs=51.3
Q ss_pred CCcee--eeChhHHHhhhcccccCceeeEEEeeCCC-CCCcccCCceEEEEEeecCCCCCCceEEEEEeeecC
Q 039302 50 EGEEL--QCDPTAYNSLHAFHIGWPCLSFDILRDTL-GLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNIS 119 (479)
Q Consensus 50 ~~~~l--~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~-~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~ 119 (479)
|+++| +.+|++|+++|+++++||||||||+||.+ +..| +||++++|++||||++..+|+|+|+++++++
T Consensus 2 e~~~lWk~n~p~lYd~~~~~~l~WPsLS~dwlpd~~~~~~~-~~~~~~~ll~GT~t~~~~~n~l~v~~~~~p~ 73 (74)
T PF12265_consen 2 EEYELWKKNDPSLYDLLHTHSLEWPSLSFDWLPDSLEGDNR-NYPHSQYLLLGTQTSGQEQNYLYVMKVSLPS 73 (74)
T ss_dssp HHHHHHHHHHHHHEEEEEEEE-SS--S-EEEEEEEEE--TT--SEEEEEEEEE---SS-S-EEEEEEEEEEE-
T ss_pred cceeehhhCCHHHHHHHhhccCCCCCeEEEECcCcccccCC-CCccEEEEEEEECcCCCCCCEEEEEEEeCCC
Confidence 34566 78899999999999999999999999988 7888 9999999999999999999999999998764
No 171
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=3.6e-19 Score=176.65 Aligned_cols=246 Identities=19% Similarity=0.326 Sum_probs=186.7
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.++.+|...|+|+.|...| +.++||++|..|+||.+.+ ..++..+.||.+.|+.++.+
T Consensus 184 krLlgH~naVyca~fDrtg-~~Iitgsdd~lvKiwS~et---------------------~~~lAs~rGhs~ditdlavs 241 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIFDRTG-RYIITGSDDRLVKIWSMET---------------------ARCLASCRGHSGDITDLAVS 241 (1113)
T ss_pred HHHHhhhhheeeeeecccc-ceEeecCccceeeeeeccc---------------------hhhhccCCCCccccchhccc
Confidence 4567999999999999999 7888999999999999876 67888999999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-Cc----e-
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG-KS----A- 316 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~-~~----~- 316 (479)
..+. +++++++|..|++|.+..+.. ...+.+|+++|++|+|+|- ++.+.||++++||.|-. .. +
T Consensus 242 ~~n~-~iaaaS~D~vIrvWrl~~~~p----vsvLrghtgavtaiafsP~-----~sss~dgt~~~wd~r~~~~~y~prp~ 311 (1113)
T KOG0644|consen 242 SNNT-MIAAASNDKVIRVWRLPDGAP----VSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRIWDARLEPRIYVPRPL 311 (1113)
T ss_pred hhhh-hhhhcccCceEEEEecCCCch----HHHHhccccceeeeccCcc-----ccCCCCCceEeccccccccccCCCCC
Confidence 9887 999999999999999988654 2458899999999999985 37789999999999821 00 0
Q ss_pred -------eeEE----------------ecCCCCEEEEEEcCCC----------CcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 317 -------LMSF----------------KAHNADVNVISWNRLA----------SCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 317 -------~~~~----------------~~h~~~v~~l~~~p~~----------~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
+..+ .+....+-+++|.... ..+.+++-.+..+++|++..+. .
T Consensus 312 ~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~----l 387 (1113)
T KOG0644|consen 312 KFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQ----L 387 (1113)
T ss_pred CcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccch----h
Confidence 0000 0001112222333222 1233333345567888888887 7
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeee
Q 039302 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKE 443 (479)
Q Consensus 364 ~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~ 443 (479)
++.+.+|...+..+.++|.+..+..+++.||...|||+-.+. |.+..+ .||..+.+
T Consensus 388 ~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~----------------------pik~y~--~gh~kl~d 443 (1113)
T KOG0644|consen 388 LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI----------------------PIKHYF--IGHGKLVD 443 (1113)
T ss_pred hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCC----------------------cceeee--cccceeec
Confidence 888889999999999999998999999999999999997653 334444 44678889
Q ss_pred EEEeCCCCcEEEEEcCCCceEEeee
Q 039302 444 LHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 444 v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
.+|+++|..++++-.-+.+.|+...
T Consensus 444 ~kFSqdgts~~lsd~hgql~i~g~g 468 (1113)
T KOG0644|consen 444 GKFSQDGTSIALSDDHGQLYILGTG 468 (1113)
T ss_pred cccCCCCceEecCCCCCceEEeccC
Confidence 9999998755555554546666553
No 172
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=1.7e-16 Score=158.18 Aligned_cols=260 Identities=22% Similarity=0.264 Sum_probs=197.7
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.+.....+|.+.|.-+.. -|..++| +..++.+.||+........ ..+ +..++...+.|+++
T Consensus 105 ~i~~~~~~~~a~v~~l~~--fGe~lia-~d~~~~l~vw~~s~~~~e~---------------~l~-~~~~~~~~~~Ital 165 (910)
T KOG1539|consen 105 HIRHTTLLHGAKVHLLLP--FGEHLIA-VDISNILFVWKTSSIQEEL---------------YLQ-STFLKVEGDFITAL 165 (910)
T ss_pred eEEEEeccccceEEEEee--ecceEEE-EEccCcEEEEEeccccccc---------------ccc-ceeeeccCCceeeE
Confidence 334556677777776654 4545665 4888999999988721000 011 12222333347776
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
.--+.--+.++.|+..|.+.||++++++. ...+.++...|+++.=+|-=. ++|.|..+|+|.|++++..+ .+.+
T Consensus 166 ~HP~TYLNKIvvGs~~G~lql~Nvrt~K~----v~~f~~~~s~IT~ieqsPaLD-VVaiG~~~G~ViifNlK~dk-il~s 239 (910)
T KOG1539|consen 166 LHPSTYLNKIVVGSSQGRLQLWNVRTGKV----VYTFQEFFSRITAIEQSPALD-VVAIGLENGTVIIFNLKFDK-ILMS 239 (910)
T ss_pred ecchhheeeEEEeecCCcEEEEEeccCcE----EEEecccccceeEeccCCcce-EEEEeccCceEEEEEcccCc-EEEE
Confidence 43333334799999999999999998765 356888889999999999877 99999999999999999986 6677
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
++...+.|++++|..+|..++|+|+..|.+.+||+...+. .......|.+.|+...|.| +..++++++.|+.+++|
T Consensus 240 Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl---~~v~~nah~~sv~~~~fl~-~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 240 FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL---INVTRNAHYGSVTGATFLP-GEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee---eeeeeccccCCcccceecC-CCceEeeccCCCceeEE
Confidence 7655699999999999999999999999999999998773 3334458999999999999 55999999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
=..++ +..|.++....||. +..++.|.-.....+.+.+.|+ ++.|.+..
T Consensus 316 vfD~~---------------------dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 316 VFDSG---------------------DGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred EeeCC---------------------CCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhH
Confidence 88766 33456777777776 7999999966557888999987 66665543
No 173
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.78 E-value=8.2e-18 Score=164.29 Aligned_cols=216 Identities=17% Similarity=0.245 Sum_probs=170.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCc-----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTG-----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.++.||-.+|++++.+|.+ +++||++... .|+||+... ......+.+|+-.|+
T Consensus 519 ~KLYGHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~---------------------W~~~~~L~~HsLTVT 576 (764)
T KOG1063|consen 519 HKLYGHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTAN---------------------WLQVQELEGHSLTVT 576 (764)
T ss_pred HHhccCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccc---------------------hhhhheecccceEEE
Confidence 5678999999999999999 8999987653 489999987 566668999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC--Cc
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG--KS 315 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~--~~ 315 (479)
.|+|||++. +|++.+.|.++.+|...............+.|+.-|.++.|+|++. +|+|+|.|++|++|..... +.
T Consensus 577 ~l~FSpdg~-~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~-~FaTaSRDK~VkVW~~~~~~d~~ 654 (764)
T KOG1063|consen 577 RLAFSPDGR-YLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEK-YFATASRDKKVKVWEEPDLRDKY 654 (764)
T ss_pred EEEECCCCc-EEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccc-eeEEecCCceEEEEeccCchhhh
Confidence 999999998 9999999999999998654433322234678999999999999998 8999999999999998876 21
Q ss_pred eee-EEecCCCCEEEEEEcCCCC----cEEEEEeCCCeEEEEeCCCCCCCC--------ceEEEeecCCCCeEEEEEeCC
Q 039302 316 ALM-SFKAHNADVNVISWNRLAS----CLLASGSDDGTFSIHDLRLLKGGD--------SVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 316 ~~~-~~~~h~~~v~~l~~~p~~~----~~l~sgs~dg~i~iwDlr~~~~~~--------~~~~~~~~h~~~I~~v~~sp~ 382 (479)
... ....+...|+.++|.|... .+++.|-..|.|.+|......... .......+|...|+.+.|.|.
T Consensus 655 i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~ 734 (764)
T KOG1063|consen 655 ISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT 734 (764)
T ss_pred hhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccc
Confidence 111 3356788999999977432 388999999999999855211100 011223357788999999986
Q ss_pred C---------CCEEEEEeCCCcEEEEECC
Q 039302 383 E---------GSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 383 ~---------~~~las~s~Dg~I~iwdl~ 402 (479)
. ...|++|+.|..++|+++.
T Consensus 735 ~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 735 CSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccccccceeEEeeecccceeEEeecc
Confidence 2 2357999999999999874
No 174
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.78 E-value=2.1e-17 Score=148.05 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=174.2
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
..+|+|.+|+++. ..+|.+..+..|.||...... ..++..++..|...|++++|+|..+ +
T Consensus 10 ~~pitchAwn~dr-t~iAv~~~~~evhiy~~~~~~------------------~w~~~htls~Hd~~vtgvdWap~sn-r 69 (361)
T KOG1523|consen 10 LEPITCHAWNSDR-TQIAVSPNNHEVHIYSMLGAD------------------LWEPAHTLSEHDKIVTGVDWAPKSN-R 69 (361)
T ss_pred cCceeeeeecCCC-ceEEeccCCceEEEEEecCCC------------------CceeceehhhhCcceeEEeecCCCC-c
Confidence 4789999999999 678888889999999987631 1578899999999999999999998 9
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeEEecCCC
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMSFKAHNA 325 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~~h~~ 325 (479)
|++|+.|..-++|....++.|.. ...+..++..++++.|+|.++ .||+||....|.||-+..... ....-+.+.+
T Consensus 70 Ivtcs~drnayVw~~~~~~~Wkp-tlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirS 147 (361)
T KOG1523|consen 70 IVTCSHDRNAYVWTQPSGGTWKP-TLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRS 147 (361)
T ss_pred eeEccCCCCccccccCCCCeecc-ceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCcccc
Confidence 99999999999999977777654 234667889999999999998 999999999999998876542 1223356778
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-----CCC---------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRL-----LKG---------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~-----~~~---------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
.|++++|+|++ -+|++|+.|+..+||..-- ... -+..+..+....+.|..+.|+|.+ ..|+-.+
T Consensus 148 tv~sldWhpnn-VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG-~~lawv~ 225 (361)
T KOG1523|consen 148 TVTSLDWHPNN-VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG-NRLAWVG 225 (361)
T ss_pred ceeeeeccCCc-ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-CEeeEec
Confidence 89999999999 9999999999999986321 100 012344555567899999999955 9999999
Q ss_pred CCCcEEEEECCCCC
Q 039302 392 ADNQLTIWDLSLEK 405 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~ 405 (479)
.|..|.+-|.....
T Consensus 226 Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 226 HDSTVSFVDAAGPS 239 (361)
T ss_pred CCCceEEeecCCCc
Confidence 99999999987663
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=4.6e-16 Score=134.38 Aligned_cols=246 Identities=17% Similarity=0.237 Sum_probs=167.2
Q ss_pred ceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcc
Q 039302 92 YTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGC 171 (479)
Q Consensus 92 ~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~ 171 (479)
...||++| ...+.|.|+++..+.+.. + ++. .+.+++ ...+|.++
T Consensus 21 ~~~~l~ag-----n~~G~iav~sl~sl~s~s-------------------------a--~~~--gk~~iv--~eqahdgp 64 (325)
T KOG0649|consen 21 SKQYLFAG-----NLFGDIAVLSLKSLDSGS-------------------------A--EPP--GKLKIV--PEQAHDGP 64 (325)
T ss_pred cceEEEEe-----cCCCeEEEEEehhhhccc-------------------------c--CCC--CCccee--eccccCCC
Confidence 35678887 467889999986442110 0 011 123343 55899999
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
|+.++|.. .+|.+|+ ||.|+-|..+............ ....|.++-...-.+|++|-..|..+ -++.
T Consensus 65 iy~~~f~d---~~Lls~g-dG~V~gw~W~E~~es~~~K~lw--------e~~~P~~~~~~evPeINam~ldP~en-Si~~ 131 (325)
T KOG0649|consen 65 IYYLAFHD---DFLLSGG-DGLVYGWEWNEEEESLATKRLW--------EVKIPMQVDAVEVPEINAMWLDPSEN-SILF 131 (325)
T ss_pred eeeeeeeh---hheeecc-CceEEEeeehhhhhhccchhhh--------hhcCccccCcccCCccceeEeccCCC-cEEE
Confidence 99999993 4566755 4999999987744322100000 00112221112234899999999887 4555
Q ss_pred EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec---------
Q 039302 252 GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA--------- 322 (479)
Q Consensus 252 g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~--------- 322 (479)
++.|+.++-||+.++.. .+.+.+|+..|.++.--.... .+++|+.||++||||+++.+ ++..+..
T Consensus 132 AgGD~~~y~~dlE~G~i----~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd~kt~k-~v~~ie~yk~~~~lRp 205 (325)
T KOG0649|consen 132 AGGDGVIYQVDLEDGRI----QREYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWDTKTQK-HVSMIEPYKNPNLLRP 205 (325)
T ss_pred ecCCeEEEEEEecCCEE----EEEEcCCcceeeeeeecccCc-ceeecCCCccEEEEeccccc-eeEEeccccChhhcCc
Confidence 55799999999998755 366999999999999844444 69999999999999999986 4444422
Q ss_pred C-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 323 H-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 323 h-~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
| ...|.+++-+. ..|++|+ ...+.+|.+|... +...|.. ..++..+.|.. ..+++++..+.|.-|.+
T Consensus 206 ~~g~wigala~~e---dWlvCGg-Gp~lslwhLrsse----~t~vfpi-pa~v~~v~F~~---d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 206 DWGKWIGALAVNE---DWLVCGG-GPKLSLWHLRSSE----STCVFPI-PARVHLVDFVD---DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ccCceeEEEeccC---ceEEecC-CCceeEEeccCCC----ceEEEec-ccceeEeeeec---ceEEEeccccceeeeee
Confidence 2 23456666553 5666665 4679999999988 5655553 56778888874 57888888899999998
Q ss_pred CCC
Q 039302 402 SLE 404 (479)
Q Consensus 402 ~~~ 404 (479)
...
T Consensus 274 ~Gv 276 (325)
T KOG0649|consen 274 NGV 276 (325)
T ss_pred ccE
Confidence 754
No 176
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=5.6e-17 Score=165.03 Aligned_cols=263 Identities=19% Similarity=0.297 Sum_probs=178.3
Q ss_pred cceeEEEEec-CCCcEEEEEeCCceEEEEeCCCCc-ccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeCCCCC
Q 039302 170 GCVNRIRAMS-QNPHICASWADTGHVQVWDFRSHL-NALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 170 ~~V~~v~~~p-~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~ 246 (479)
..|+.+.+.. ++..++.+|+.||.|+||+--... ...+... ....+.. +.+-.+...-++|.....
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVT-----------aw~~Ls~~~~~~r~~~~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVT-----------AWSSLSDQLPGARGTGLVVDWQQQSG 1178 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEE-----------eeccccccCccCCCCCeeeehhhhCC
Confidence 4566766655 335688899999999999854421 1110000 0111111 112223345678987775
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--eeeEEecCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--ALMSFKAHN 324 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~~~~~~~h~ 324 (479)
.|++++.-..|+|||........ ....+....|+++.-+-.+.++|++|-.||.|++||.|.... .+...+.|+
T Consensus 1179 -~Ll~tGd~r~IRIWDa~~E~~~~---diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~ 1254 (1387)
T KOG1517|consen 1179 -HLLVTGDVRSIRIWDAHKEQVVA---DIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHN 1254 (1387)
T ss_pred -eEEecCCeeEEEEEecccceeEe---ecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccC
Confidence 77777768899999997643322 112234566788776655556999999999999999998743 566778898
Q ss_pred CC--EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC--C-CeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 325 AD--VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK--H-PVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 325 ~~--v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~--~-~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
.. |..+.+.+.|-..|++|+.+|.|++||+|.... ....++..|. + .++++..+++. .++|+|+. +.|.||
T Consensus 1255 ~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~--e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1255 DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK--ETFLTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIY 1330 (1387)
T ss_pred CcccceeEEeecCCCcceeeeccCCeEEEEecccCcc--cccceeeeccccCccceeeeeccCC-CeeeecCc-ceEEEE
Confidence 87 999999998855699999999999999998531 1233333333 3 59999999965 89999998 999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++....-. ...+.-.|.-+....+.+++|||... ++|.|+.|. |+||...+-
T Consensus 1331 ~~~G~~l~------------------~~k~n~~F~~q~~gs~scL~FHP~~~-llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1331 SLSGEQLN------------------IIKYNPGFMGQRIGSVSCLAFHPHRL-LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecChhhhc------------------ccccCcccccCcCCCcceeeecchhH-hhhhccCCceEEEeecCCc
Confidence 99865321 11112223333223689999999874 677777777 888876543
No 177
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.2e-17 Score=146.58 Aligned_cols=217 Identities=16% Similarity=0.205 Sum_probs=158.3
Q ss_pred cEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcE
Q 039302 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 226 ~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I 305 (479)
+..+++|.++|++|+|+.+|. .|+|++.|++|+||+++.-....-......-.-+-.+.+.|.|+-+.+++++-...+|
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK-~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGK-KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhhccCCceeeeEEcCCCc-eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEE
Confidence 345789999999999999999 9999999999999999763221000000111112457889999999788888888899
Q ss_pred EEEEcCCCCc---ee--------eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe
Q 039302 306 AIWDTRVGKS---AL--------MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV 374 (479)
Q Consensus 306 ~iwD~~~~~~---~~--------~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I 374 (479)
++|-+..... +. ..-+.|...+..+-....+ .+|++++.|..|.+|+++ ++ .+.++......-
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq----~L~~idtnq~~n 231 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQ----LLQSIDTNQSSN 231 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cc----eeeeeccccccc
Confidence 9998754321 11 1123466677777666666 899999999999999999 55 677777767777
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcE
Q 039302 375 TSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGM 453 (479)
Q Consensus 375 ~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~l 453 (479)
+..+.+|++ +++|+++----|++|.+-..++..- ++ ..-.|...|| ..|..++|+++.. -
T Consensus 232 ~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~f-qe----------------v~rvf~LkGH~saV~~~aFsn~S~-r 292 (420)
T KOG2096|consen 232 YDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTF-QE----------------VKRVFSLKGHQSAVLAAAFSNSST-R 292 (420)
T ss_pred cceeeCCCC-cEEEEecCCCCceEEEEEeccCcch-hh----------------hhhhheeccchhheeeeeeCCCcc-e
Confidence 889999955 9999999999999999876654211 00 0122333444 5799999999985 7
Q ss_pred EEEEcCCC-ceEEeee
Q 039302 454 IVSTAADG-FNILMPS 468 (479)
Q Consensus 454 l~s~~~dg-i~iw~~~ 468 (479)
+++.+.|| .+||++.
T Consensus 293 ~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDTD 308 (420)
T ss_pred eEEEecCCcEEEeecc
Confidence 78888888 8999874
No 178
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.77 E-value=1.5e-17 Score=145.14 Aligned_cols=257 Identities=15% Similarity=0.187 Sum_probs=185.2
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCce
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEG 236 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v 236 (479)
+|+. .+.+|.+.|+++.|-.++ + |.+|...|.|++|++++ ..++..+. .|+..|
T Consensus 5 dP~f--vLRp~~~~v~s~~fqa~~-r-L~sg~~~G~V~~w~lqt---------------------~r~~~~~r~~g~~~i 59 (323)
T KOG0322|consen 5 DPFF--VLRPHSSSVTSVLFQANE-R-LMSGLSVGIVKMWVLQT---------------------ERDLPLIRLFGRLFI 59 (323)
T ss_pred CCee--Eeccccchheehhhccch-h-hhcccccceEEEEEeec---------------------Cccchhhhhhcccee
Confidence 4565 455999999999999887 3 66889999999999998 45555666 456688
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc----------------------cc-----------------------
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW----------------------NV----------------------- 271 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~----------------------~~----------------------- 271 (479)
+.+.--|++ .|.+-+.|+.+.+|++...... ..
T Consensus 60 t~lq~~p~d--~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t 137 (323)
T KOG0322|consen 60 TNLQSIPND--SLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT 137 (323)
T ss_pred eceeecCCc--chhhcCCCceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc
Confidence 888888874 7889999999999998652100 00
Q ss_pred ----CCCCcccCCCcEEEEEECCCC--CcEEEEEeCCCcEEEEEcCCCCc---------eeeEEecCCCCEEEEEEcCCC
Q 039302 272 ----DPNPFIGHAASVEDLQWSPTE--SDVFASCSVDGNIAIWDTRVGKS---------ALMSFKAHNADVNVISWNRLA 336 (479)
Q Consensus 272 ----~~~~~~~h~~~V~~l~~sp~~--~~~l~s~s~dg~I~iwD~~~~~~---------~~~~~~~h~~~v~~l~~~p~~ 336 (479)
....-.+..+.|.|..|.-.. ..++++|-++|.+.+||+.++.. .......|..+|.++.|.+.-
T Consensus 138 qv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~ 217 (323)
T KOG0322|consen 138 QVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC 217 (323)
T ss_pred eeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh
Confidence 000001234566676653322 23567788999999999998631 223346789999999998765
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhh
Q 039302 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAK 416 (479)
Q Consensus 337 ~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~ 416 (479)
..=++|+-+..+.+|.+.......+.-....--.-.|..+..-|++ .+|||+|.|++|+||..++..
T Consensus 218 -~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~----------- 284 (323)
T KOG0322|consen 218 -DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLN----------- 284 (323)
T ss_pred -cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCC-----------
Confidence 4557778888889998875432111222223334568889999965 999999999999999999875
Q ss_pred cccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 417 TREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 417 ~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
|..++..|. ..|++++|+|+.+ ++|+++.|+ |.+|++.
T Consensus 285 -----------pLAVLkyHs--agvn~vAfspd~~-lmAaaskD~rISLWkLY 323 (323)
T KOG0322|consen 285 -----------PLAVLKYHS--AGVNAVAFSPDCE-LMAAASKDARISLWKLY 323 (323)
T ss_pred -----------chhhhhhhh--cceeEEEeCCCCc-hhhhccCCceEEeeecC
Confidence 234555565 6799999999975 889999998 9999873
No 179
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=1.7e-17 Score=160.31 Aligned_cols=194 Identities=18% Similarity=0.271 Sum_probs=150.5
Q ss_pred EeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCC
Q 039302 188 WADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDA 267 (479)
Q Consensus 188 ~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~ 267 (479)
.+..|.|-||+++...... ...+-.+ -....|+.+.|.|....+||.++.||.|+||.+..++
T Consensus 599 ~g~gG~iai~el~~PGrLP----------------Dgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~g 661 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLP----------------DGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANG 661 (1012)
T ss_pred cCCCceEEEEEcCCCCCCC----------------ccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCC
Confidence 3557999999998743222 1112222 1345899999999988899999999999999998765
Q ss_pred cc---ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe
Q 039302 268 TW---NVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS 344 (479)
Q Consensus 268 ~~---~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs 344 (479)
.. ......+..|...|+++.|+|--.++|++++.|-+|+|||+++.+ ....+.+|...|..++|+|+| ..+|+.+
T Consensus 662 l~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~-~~~~l~gHtdqIf~~AWSpdG-r~~AtVc 739 (1012)
T KOG1445|consen 662 LPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK-LYSRLVGHTDQIFGIAWSPDG-RRIATVC 739 (1012)
T ss_pred CCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh-hhheeccCcCceeEEEECCCC-cceeeee
Confidence 42 223355788999999999999988899999999999999999986 667889999999999999999 9999999
Q ss_pred CCCeEEEEeCCCCCCCCceEEEeecCC-CCeEEEEEeCCCCCEEEEEeCC----CcEEEEECCCC
Q 039302 345 DDGTFSIHDLRLLKGGDSVVAHFEYHK-HPVTSIEWSPHEGSTLAVSSAD----NQLTIWDLSLE 404 (479)
Q Consensus 345 ~dg~i~iwDlr~~~~~~~~~~~~~~h~-~~I~~v~~sp~~~~~las~s~D----g~I~iwdl~~~ 404 (479)
.||+|++|..|+... +++.-.+.. ..--.|-|.-++ .++++.+.| .+|.+||....
T Consensus 740 KDg~~rVy~Prs~e~---pv~Eg~gpvgtRgARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l 800 (1012)
T KOG1445|consen 740 KDGTLRVYEPRSREQ---PVYEGKGPVGTRGARILWACDG-RIVIVVGFDKSSERQVQMYDAQTL 800 (1012)
T ss_pred cCceEEEeCCCCCCC---ccccCCCCccCcceeEEEEecC-cEEEEecccccchhhhhhhhhhhc
Confidence 999999999998875 665544322 223467787755 666666554 46778876654
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.77 E-value=1.1e-17 Score=162.35 Aligned_cols=234 Identities=19% Similarity=0.339 Sum_probs=178.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.|+.++|-|+|..+++.++ ..+.|||.+. +..+.++++|.+-|+|++|+.+|+ ++|
T Consensus 14 ci~d~afkPDGsqL~lAAg--~rlliyD~nd---------------------G~llqtLKgHKDtVycVAys~dGk-rFA 69 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG--SRLLVYDTSD---------------------GTLLQPLKGHKDTVYCVAYAKDGK-RFA 69 (1081)
T ss_pred chheeEECCCCceEEEecC--CEEEEEeCCC---------------------cccccccccccceEEEEEEccCCc-eec
Confidence 8999999999987776644 5799999997 788899999999999999999998 999
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
||+.|..|.+|...-.+.. .-.|+..|.|+.|+|-.. .+++|+-. ..-+|...... +... .....|+++
T Consensus 70 SG~aDK~VI~W~~klEG~L------kYSH~D~IQCMsFNP~~h-~LasCsLs-dFglWS~~qK~--V~K~-kss~R~~~C 138 (1081)
T KOG1538|consen 70 SGSADKSVIIWTSKLEGIL------KYSHNDAIQCMSFNPITH-QLASCSLS-DFGLWSPEQKS--VSKH-KSSSRIICC 138 (1081)
T ss_pred cCCCceeEEEeccccccee------eeccCCeeeEeecCchHH-Hhhhcchh-hccccChhhhh--HHhh-hhheeEEEe
Confidence 9999999999997654432 236899999999999887 89999854 46678776542 2222 234578999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC----CEEEEEeCCCcEEEEECCCCCC
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG----STLAVSSADNQLTIWDLSLEKD 406 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~----~~las~s~Dg~I~iwdl~~~~~ 406 (479)
+|+.+| .+|+.|-.+|+|.|-+-.... ...+..-.+...+|++|+|+|..+ ..++......++.+|.++...-
T Consensus 139 sWtnDG-qylalG~~nGTIsiRNk~gEe--k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I 215 (1081)
T KOG1538|consen 139 SWTNDG-QYLALGMFNGTISIRNKNGEE--KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI 215 (1081)
T ss_pred eecCCC-cEEEEeccCceEEeecCCCCc--ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceee
Confidence 999999 999999999999986432221 112233335778999999999653 4677888888888888865421
Q ss_pred hHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 407 EEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
. ....-.-...++.+.|+|.++++.|++.++++|.-
T Consensus 216 g-------------------------k~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR 251 (1081)
T KOG1538|consen 216 G-------------------------KDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR 251 (1081)
T ss_pred c-------------------------ccccCCCCchhheeccCCcEEEEccCCCceEEEee
Confidence 0 00111125778999999998888888888888854
No 181
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=2e-16 Score=136.55 Aligned_cols=244 Identities=16% Similarity=0.239 Sum_probs=173.2
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.|.+-+++|.+ ++++.|+.+|+|.++.++...+....+. ...++..+++|.++++.|+|.. . +|+
T Consensus 12 tvf~qa~sp~~-~~l~agn~~G~iav~sl~sl~s~sa~~~-----------gk~~iv~eqahdgpiy~~~f~d--~-~Ll 76 (325)
T KOG0649|consen 12 TVFAQAISPSK-QYLFAGNLFGDIAVLSLKSLDSGSAEPP-----------GKLKIVPEQAHDGPIYYLAFHD--D-FLL 76 (325)
T ss_pred HHHHHhhCCcc-eEEEEecCCCeEEEEEehhhhccccCCC-----------CCcceeeccccCCCeeeeeeeh--h-hee
Confidence 56677899988 7888999999999999987543322111 2456777899999999999983 2 788
Q ss_pred EEeCCCeEEEEecCCCCc-------cccCCCCcc---cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 251 SGDCNSCIHLWEPASDAT-------WNVDPNPFI---GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~-------~~~~~~~~~---~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
+|+ ||.|+-|.-+.... |.+ ..++. ..-..|+++-..|..+.+|.+| .|+.++-||+.+++ ....+
T Consensus 77 s~g-dG~V~gw~W~E~~es~~~K~lwe~-~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~-i~r~~ 152 (325)
T KOG0649|consen 77 SGG-DGLVYGWEWNEEEESLATKRLWEV-KIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGR-IQREY 152 (325)
T ss_pred ecc-CceEEEeeehhhhhhccchhhhhh-cCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCE-EEEEE
Confidence 887 69999997654322 111 11111 1124688999999988555554 79999999999996 67789
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---------C-CCCeEEEEEeCCCCCEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---------H-KHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---------h-~~~I~~v~~sp~~~~~las~ 390 (479)
++|...|.++.-.... ..+++|+.||+++|||.++.+ .+..+.. | ..+|.+++-+. .+|++|
T Consensus 153 rGHtDYvH~vv~R~~~-~qilsG~EDGtvRvWd~kt~k----~v~~ie~yk~~~~lRp~~g~wigala~~e---dWlvCG 224 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNAN-GQILSGAEDGTVRVWDTKTQK----HVSMIEPYKNPNLLRPDWGKWIGALAVNE---DWLVCG 224 (325)
T ss_pred cCCcceeeeeeecccC-cceeecCCCccEEEEeccccc----eeEEeccccChhhcCcccCceeEEEeccC---ceEEec
Confidence 9999999999885444 589999999999999999988 5655543 2 23566776653 566665
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+ ...+.+|.|+.... ..+|.-. ..|..+.|-.+ ++++++.++ ++-|.+.-
T Consensus 225 g-Gp~lslwhLrsse~-----------------------t~vfpip--a~v~~v~F~~d---~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 225 G-GPKLSLWHLRSSES-----------------------TCVFPIP--ARVHLVDFVDD---CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred C-CCceeEEeccCCCc-----------------------eEEEecc--cceeEeeeecc---eEEEeccccceeeeeecc
Confidence 4 56799999998752 2233222 35777778654 455566444 77787755
Q ss_pred c
Q 039302 470 I 470 (479)
Q Consensus 470 ~ 470 (479)
+
T Consensus 276 v 276 (325)
T KOG0649|consen 276 V 276 (325)
T ss_pred E
Confidence 4
No 182
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.76 E-value=4e-17 Score=157.78 Aligned_cols=215 Identities=15% Similarity=0.241 Sum_probs=164.8
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
....|+.+.|.|.+...||.+++||.|+||.+....-.- ....|...+.+|...|+.|.|+|-...
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e--------------~~~tPe~~lt~h~eKI~slRfHPLAad 691 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPE--------------NEMTPEKILTIHGEKITSLRFHPLAAD 691 (1012)
T ss_pred cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCc--------------ccCCcceeeecccceEEEEEecchhhh
Confidence 346799999999988999999999999999997632110 135677889999999999999999888
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC-CCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH-NAD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h-~~~ 326 (479)
.|++++.|-+|+|||+.+... ...+.+|++.|.+++|+|+|+ .+|+.+.||+|++|.-|....++..-.+. ...
T Consensus 692 vLa~asyd~Ti~lWDl~~~~~----~~~l~gHtdqIf~~AWSpdGr-~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtR 766 (1012)
T KOG1445|consen 692 VLAVASYDSTIELWDLANAKL----YSRLVGHTDQIFGIAWSPDGR-RIATVCKDGTLRVYEPRSREQPVYEGKGPVGTR 766 (1012)
T ss_pred Hhhhhhccceeeeeehhhhhh----hheeccCcCceeEEEECCCCc-ceeeeecCceEEEeCCCCCCCccccCCCCccCc
Confidence 999999999999999988654 356899999999999999999 99999999999999999886655443221 123
Q ss_pred EEEEEEcCCCCcEEEEEeCC----CeEEEEeCCCCCCCCceEEEeecCCCC-eEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 327 VNVISWNRLASCLLASGSDD----GTFSIHDLRLLKGGDSVVAHFEYHKHP-VTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~d----g~i~iwDlr~~~~~~~~~~~~~~h~~~-I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
-..|.|.-++ .++++.+.| ..|.+||..+.. ..++.+..-...+ +.--.+.++.+.+|++|-.|..|.+|.+
T Consensus 767 gARi~wacdg-r~viv~Gfdk~SeRQv~~Y~Aq~l~--~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv 843 (1012)
T KOG1445|consen 767 GARILWACDG-RIVIVVGFDKSSERQVQMYDAQTLD--LRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEV 843 (1012)
T ss_pred ceeEEEEecC-cEEEEecccccchhhhhhhhhhhcc--CCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEe
Confidence 4567888888 565555555 468899987765 1244443322111 1222455666678899999999999998
Q ss_pred CCC
Q 039302 402 SLE 404 (479)
Q Consensus 402 ~~~ 404 (479)
-..
T Consensus 844 ~~e 846 (1012)
T KOG1445|consen 844 IYE 846 (1012)
T ss_pred cCC
Confidence 765
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.75 E-value=9.8e-15 Score=145.16 Aligned_cols=251 Identities=29% Similarity=0.481 Sum_probs=188.9
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeC-CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWAD-TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
........|...|..+.|+|++. .+++++. ++.+++|++.. ...+..+.+|...+.+
T Consensus 146 ~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 146 KLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRT---------------------GKPLSTLAGHTDPVSS 203 (466)
T ss_pred eEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCC---------------------CceEEeeccCCCceEE
Confidence 34457889999999999999995 6666675 99999999986 4667778889999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++|+|++...+++++.|+.|++||...+.... ..+.+|...+ ...|+|++. ++++++.|+.+++|+++.......
T Consensus 204 ~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~ 278 (466)
T COG2319 204 LAFSPDGGLLIASGSSDGTIRLWDLSTGKLLR---STLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSLLR 278 (466)
T ss_pred EEEcCCcceEEEEecCCCcEEEEECCCCcEEe---eecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcEEE
Confidence 99998886345555999999999877433211 1466777775 448999995 888999999999999998764244
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee--cCCCCeEEEEEeCCCCCEEEEE-eCCCc
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE--YHKHPVTSIEWSPHEGSTLAVS-SADNQ 395 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~--~h~~~I~~v~~sp~~~~~las~-s~Dg~ 395 (479)
.+..|...+.++.|+|.+ ..+++++.|+.+.+||++... ...... .|...+..+.| +.++..++.+ ..|+.
T Consensus 279 ~~~~~~~~v~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~ 352 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDG-KLLASGSSDGTVRLWDLETGK----LLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGT 352 (466)
T ss_pred EEecCCccEEEEEECCCC-CEEEEeeCCCcEEEEEcCCCc----eEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCc
Confidence 446788999999999977 666668888999999998877 344444 78888999999 5232455555 68899
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE-EcCCC-ceEEeeecc
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS-TAADG-FNILMPSNI 470 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s-~~~dg-i~iw~~~~~ 470 (479)
+.+|++.... ..........+..+.+.+ . ..+++ +..++ +.+|+....
T Consensus 353 ~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 402 (466)
T COG2319 353 IRLWDLRTGK-------------------------PLKTLEGHSNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTG 402 (466)
T ss_pred EEeeecCCCc-------------------------eeEEecCCceEEEEEECC-C-CCEEEEecCCCceEEEecccC
Confidence 9999998762 111122112388999999 6 55555 66665 899988665
No 184
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=7.4e-15 Score=146.01 Aligned_cols=249 Identities=24% Similarity=0.406 Sum_probs=188.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEe-
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDW- 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~- 241 (479)
....|...+.++.+.+.+ ..++.++.++.+.+|+.... ...+..+.++. ..+..+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~ 118 (466)
T COG2319 60 LLRGHEDSITSIAFSPDG-ELLLSGSSDGTIKLWDLDNG--------------------EKLIKSLEGLHDSSVSKLALS 118 (466)
T ss_pred eeeeccceEEEEEECCCC-cEEEEecCCCcEEEEEcCCC--------------------ceeEEEEeccCCCceeeEEEE
Confidence 567899999999999999 66777789999999999872 11445555533 36777777
Q ss_pred CCCCCCeEEEEe-CCCeEEEEecCC-CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCceee
Q 039302 242 NPVAPGRLVSGD-CNSCIHLWEPAS-DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-DGNIAIWDTRVGKSALM 318 (479)
Q Consensus 242 s~~~~~~l~sg~-~dg~I~lwd~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-dg~I~iwD~~~~~~~~~ 318 (479)
++++...++..+ .|+.+.+|++.. ... ...+..|...|.+++|+|++. .+++++. |+.+++|+++... .+.
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 192 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKL----IRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK-PLS 192 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeE----EEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc-eEE
Confidence 666652444434 499999999976 222 245778999999999999998 7888875 9999999999854 667
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE-EeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA-HFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~-~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.+..|...|.+++|+|++..++++++.|+.|++||.+... .+. .+.+|...+ ...|+|++ .++++++.|+.++
T Consensus 193 ~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~ 266 (466)
T COG2319 193 TLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK----LLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIR 266 (466)
T ss_pred eeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc----EEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEE
Confidence 7788999999999999884366666999999999988555 566 688888875 44899976 8888999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+|++..... ....+..| ...|.++.|+|....+++ ++.++ +.+|+...
T Consensus 267 ~~~~~~~~~---------------------~~~~~~~~--~~~v~~~~~~~~~~~~~~-~~~d~~~~~~~~~~ 315 (466)
T COG2319 267 LWDLRSSSS---------------------LLRTLSGH--SSSVLSVAFSPDGKLLAS-GSSDGTVRLWDLET 315 (466)
T ss_pred EeeecCCCc---------------------EEEEEecC--CccEEEEEECCCCCEEEE-eeCCCcEEEEEcCC
Confidence 999987641 01111122 357999999997654555 66666 78885543
No 185
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=3.1e-14 Score=138.54 Aligned_cols=260 Identities=10% Similarity=0.075 Sum_probs=164.4
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
....+.+....+.++|+++.+++++..++.|.+|++.... . ...+.... .......++|+|
T Consensus 29 ~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g-~-----------------l~~~~~~~-~~~~p~~i~~~~ 89 (330)
T PRK11028 29 QVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG-A-----------------LTFAAESP-LPGSPTHISTDH 89 (330)
T ss_pred eEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCC-c-----------------eEEeeeec-CCCCceEEEECC
Confidence 4445567788999999996666666678999999997410 0 01111111 222456899999
Q ss_pred CCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee----e
Q 039302 244 VAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL----M 318 (479)
Q Consensus 244 ~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~----~ 318 (479)
+++ +|++++ .++.|.+|++.+.+........+. +......++++|+++.++++...++.|.+||+.+..... .
T Consensus 90 ~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~ 167 (330)
T PRK11028 90 QGR-FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA 167 (330)
T ss_pred CCC-EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC
Confidence 998 666655 588999999975332211111122 223467789999998666777778999999998643111 0
Q ss_pred EE-ecCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecC------CCCeEEEEEeCCCCCEEEEE
Q 039302 319 SF-KAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYH------KHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 319 ~~-~~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h------~~~I~~v~~sp~~~~~las~ 390 (479)
.. .........+.|+|++ .+|+++. .++.|.+||+.........+..+..+ ......+.++|++ ++|+++
T Consensus 168 ~~~~~~g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg-~~lyv~ 245 (330)
T PRK11028 168 EVTTVEGAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG-RHLYAC 245 (330)
T ss_pred ceecCCCCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC-CEEEEe
Confidence 11 1123446789999999 5555554 48999999997432101133333321 1223468899966 666666
Q ss_pred e-CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 391 S-ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 391 s-~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
. .++.|.+|++...... ..+..+.. ......++|+|++..++++...++ |.+|++
T Consensus 246 ~~~~~~I~v~~i~~~~~~----------------------~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 246 DRTASLISVFSVSEDGSV----------------------LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred cCCCCeEEEEEEeCCCCe----------------------EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 4 4789999999654210 11122211 124678999999998888776555 999987
Q ss_pred e
Q 039302 468 S 468 (479)
Q Consensus 468 ~ 468 (479)
.
T Consensus 304 ~ 304 (330)
T PRK11028 304 D 304 (330)
T ss_pred c
Confidence 4
No 186
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=2.5e-16 Score=149.70 Aligned_cols=203 Identities=17% Similarity=0.303 Sum_probs=154.9
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
..++.++.||.+.|.+-.. +....+..|.+.+.+-.|+|+|. -|+|++.||.|++|.
T Consensus 76 d~~~i~s~DGkf~il~k~~----------------------rVE~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWS 132 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA----------------------RVERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWS 132 (737)
T ss_pred ceEEEEcCCceEEEecccc----------------------hhhhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEe
Confidence 4566679999999977553 44456778999999999999998 788999999999998
Q ss_pred cCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEE
Q 039302 263 PASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLAS 342 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 342 (479)
-.. ... ..+.....+|.|++|.|+..+++.+.+ +.+.|=-+.... .+...++|.+-|.+++|++.+ .++++
T Consensus 133 rsG--MLR---Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~-k~i~WkAHDGiiL~~~W~~~s-~lI~s 203 (737)
T KOG1524|consen 133 RSG--MLR---STVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANS-KIIRWRAHDGLVLSLSWSTQS-NIIAS 203 (737)
T ss_pred ccc--hHH---HHHhhcCceeEEEEECCCCCceEEecC--CeEEEeeccccc-ceeEEeccCcEEEEeecCccc-cceee
Confidence 533 211 223345678999999999986666554 567666665543 567889999999999999999 99999
Q ss_pred EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccC
Q 039302 343 GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVN 422 (479)
Q Consensus 343 gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~ 422 (479)
|+.|-..+|||-... ++..-..|..+|++|+|+|+ ..++.+|. ++++ +...
T Consensus 204 gGED~kfKvWD~~G~-----~Lf~S~~~ey~ITSva~npd--~~~~v~S~-nt~R---~~~p------------------ 254 (737)
T KOG1524|consen 204 GGEDFRFKIWDAQGA-----NLFTSAAEEYAITSVAFNPE--KDYLLWSY-NTAR---FSSP------------------ 254 (737)
T ss_pred cCCceeEEeecccCc-----ccccCChhccceeeeeeccc--cceeeeee-eeee---ecCC------------------
Confidence 999999999997532 67778889999999999994 56666653 3344 2221
Q ss_pred CCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 423 APEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 423 ~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
....|..++|+++|..+.+.++.+
T Consensus 255 --------------~~GSifnlsWS~DGTQ~a~gt~~G 278 (737)
T KOG1524|consen 255 --------------RVGSIFNLSWSADGTQATCGTSTG 278 (737)
T ss_pred --------------CccceEEEEEcCCCceeeccccCc
Confidence 124689999999997555555555
No 187
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=9.6e-16 Score=137.06 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=150.9
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
..|+.|++.|. +||+|..||.|.|||+.+.+. .+.+.+|..+|.+++||++|+ .|+++|.|..|.+||+..+.
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~i----ar~lsaH~~pi~sl~WS~dgr-~LltsS~D~si~lwDl~~gs- 98 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRI----ARMLSAHVRPITSLCWSRDGR-KLLTSSRDWSIKLWDLLKGS- 98 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccch----hhhhhccccceeEEEecCCCC-EeeeecCCceeEEEeccCCC-
Confidence 78999999998 999999999999999988654 366889999999999999999 99999999999999999986
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC---CCCeEEEEEeCCCCCEEEEEeC
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH---KHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h---~~~I~~v~~sp~~~~~las~s~ 392 (479)
++..+. ..++|..+.|+|...+..++.-.+..-.+-++..... .+...... ...-.+..|.+. +.++++|..
T Consensus 99 ~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h---~~Lp~d~d~dln~sas~~~fdr~-g~yIitGts 173 (405)
T KOG1273|consen 99 PLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH---SVLPKDDDGDLNSSASHGVFDRR-GKYIITGTS 173 (405)
T ss_pred ceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCce---eeccCCCccccccccccccccCC-CCEEEEecC
Confidence 666554 5789999999998867776666666666666654321 11111110 111123357775 499999999
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC--CCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG--QKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g--~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
-|.+.+++..+.+.. ..+.- ...|+.+.++..+..+++-+++.-|+.|....+
T Consensus 174 KGkllv~~a~t~e~v-------------------------as~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di 228 (405)
T KOG1273|consen 174 KGKLLVYDAETLECV-------------------------ASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDI 228 (405)
T ss_pred cceEEEEecchheee-------------------------eeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhh
Confidence 999999999887431 11111 246999999999987777777666888888766
No 188
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.71 E-value=2.3e-15 Score=153.46 Aligned_cols=253 Identities=18% Similarity=0.271 Sum_probs=175.4
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC---CCceEEEEeCCC-C
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH---KDEGYAIDWNPV-A 245 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~s~~-~ 245 (479)
+.-..+.|+|..+ .++++...-.|+|||.+. ++.+..|..+ ...|+.|.+-.. .
T Consensus 1065 ~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~---------------------~~~l~~F~n~~~~~t~Vs~l~liNe~D 1122 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEP-QIAAADDRERIRVWDWEK---------------------GRLLNGFDNGAFPDTRVSDLELINEQD 1122 (1387)
T ss_pred CCCceeeecCCCc-eeEEcCCcceEEEEeccc---------------------CceeccccCCCCCCCccceeeeecccc
Confidence 4466788899885 555657677899999987 3444444333 236777776543 3
Q ss_pred CCeEEEEeCCCeEEEEecCCCC--cccc--CCCCcccC----CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 246 PGRLVSGDCNSCIHLWEPASDA--TWNV--DPNPFIGH----AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~--~~~~--~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
..+|++|++||.|+||+--... .... .-..+.++ .+.-.-+.|..... +|+++|.-..|+|||..... .+
T Consensus 1123 ~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~-~~ 1200 (1387)
T KOG1517|consen 1123 DALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQ-VV 1200 (1387)
T ss_pred hhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccce-eE
Confidence 3489999999999999754321 1110 00111111 11113456777766 56666668999999998765 33
Q ss_pred eEE-ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC--eEEEEEeCCCCCEEEEEeCCC
Q 039302 318 MSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP--VTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 318 ~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~--I~~v~~sp~~~~~las~s~Dg 394 (479)
..+ .+....|++++-+-..+++|++|..||.|++||.|.... ...+...+.|... |..+.+.+.+-..|++||.||
T Consensus 1201 ~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~-ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G 1279 (1387)
T KOG1517|consen 1201 ADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPP-DSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDG 1279 (1387)
T ss_pred eecccCCCccceeecccccCCceEEEeecCCceEEeecccCCc-cccceeecccCCcccceeEEeecCCCcceeeeccCC
Confidence 333 445667888877766669999999999999999998764 3567888889988 999999997655699999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
.|++||++....+ . .-.+..|..- ...+++..|++.+ ++|+|+...|.||.+.
T Consensus 1280 ~I~~~DlR~~~~e-------------------~-~~~iv~~~~yGs~lTal~VH~hap-iiAsGs~q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1280 DIQLLDLRMSSKE-------------------T-FLTIVAHWEYGSALTALTVHEHAP-IIASGSAQLIKIYSLS 1333 (1387)
T ss_pred eEEEEecccCccc-------------------c-cceeeeccccCccceeeeeccCCC-eeeecCcceEEEEecC
Confidence 9999999985211 1 1122333311 2589999999987 8888888558999874
No 189
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=2.7e-16 Score=145.99 Aligned_cols=201 Identities=19% Similarity=0.238 Sum_probs=155.1
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSG 252 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 252 (479)
-+++|+.+| ..+|+|+.||++|||++.. ...+.....|..+|.+|+|+|++. .|++-
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps---------------------~~t~l~e~~~~~eV~DL~FS~dgk-~lasi 204 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPS---------------------MLTILEEIAHHAEVKDLDFSPDGK-FLASI 204 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCc---------------------chhhhhhHhhcCccccceeCCCCc-EEEEe
Confidence 678999998 7999999999999999887 456667778999999999999998 99999
Q ss_pred eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC---Cc-EEEEEeCCCcEEEEEcCCCCc----eeeEEecCC
Q 039302 253 DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE---SD-VFASCSVDGNIAIWDTRVGKS----ALMSFKAHN 324 (479)
Q Consensus 253 ~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~---~~-~l~s~s~dg~I~iwD~~~~~~----~~~~~~~h~ 324 (479)
+.| ..+||+.+++..+.. ..-.........+.|+.++ .- +++.-..-+.|+.||+..... ...+.....
T Consensus 205 g~d-~~~VW~~~~g~~~a~--~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~ 281 (398)
T KOG0771|consen 205 GAD-SARVWSVNTGAALAR--KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF 281 (398)
T ss_pred cCC-ceEEEEeccCchhhh--cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc
Confidence 989 999999998744321 1112233445667777666 21 333344567788877765432 222222334
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
..|.+++.+.+| +++|.|+.||.|-|++....+. ....-+.|...|+.+.|+|+. +++++.+.|.++.|..+...
T Consensus 282 ~siSsl~VS~dG-kf~AlGT~dGsVai~~~~~lq~---~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 282 KSISSLAVSDDG-KFLALGTMDGSVAIYDAKSLQR---LQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CcceeEEEcCCC-cEEEEeccCCcEEEEEeceeee---eEeehhhheeeeeeEEEcCCc-CcccccccCCceeEEEEeec
Confidence 579999999999 9999999999999999998884 344456799999999999955 89999999999999888764
No 190
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.4e-16 Score=147.48 Aligned_cols=275 Identities=21% Similarity=0.303 Sum_probs=200.5
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAI 239 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l 239 (479)
+..++.+|.|+|+.|.|...| .++++||.|..|.+||... .++... ..||...|+.-
T Consensus 134 l~~kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~---------------------~~~~l~f~SGH~~NvfQa 191 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVS---------------------GSPKLSFESGHCNNVFQA 191 (559)
T ss_pred hhhcccCCCCccceeeecccC-ceeeccCccceEEeehhhc---------------------cCcccccccccccchhhh
Confidence 345788999999999999999 8999999999999999987 333333 45788889988
Q ss_pred EeCCCCCC-eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--e
Q 039302 240 DWNPVAPG-RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--A 316 (479)
Q Consensus 240 ~~s~~~~~-~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~ 316 (479)
.|-|.... .|++++.||.+++=.+...+... ....+..|.++|.-++.-|..++.|.+|+.|+.+.-+|+|+... .
T Consensus 192 KFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e-~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~ 270 (559)
T KOG1334|consen 192 KFIPFSGDRTIVTSSRDGQVRVSEILETGYVE-NTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEK 270 (559)
T ss_pred hccCCCCCcCceeccccCceeeeeecccccee-cceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccce
Confidence 89887533 79999999999998875543322 12456779999999999999999999999999999999998742 2
Q ss_pred eeEEecCCC---CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC--CceEEEeecC------CCCeEEEEEeCCCCC
Q 039302 317 LMSFKAHNA---DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG--DSVVAHFEYH------KHPVTSIEWSPHEGS 385 (479)
Q Consensus 317 ~~~~~~h~~---~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~--~~~~~~~~~h------~~~I~~v~~sp~~~~ 385 (479)
+.....+.. ..+.++.+|.+.+.+++|+.|..+++||.|..... ..++..|..| .-.|++++++..+ .
T Consensus 271 ~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~-s 349 (559)
T KOG1334|consen 271 FVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG-S 349 (559)
T ss_pred eeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc-c
Confidence 222344444 68899999999889999999999999999987642 1123444332 3469999999755 4
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEcCCC-ce
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTAADG-FN 463 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~~dg-i~ 463 (479)
-|.++-.|-.|+++.-....-.+. -.........++.+..|.....|+++-|- |.. .+++||++-| |.
T Consensus 350 ElLaSYnDe~IYLF~~~~~~G~~p---------~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIF 419 (559)
T KOG1334|consen 350 ELLASYNDEDIYLFNKSMGDGSEP---------DPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIF 419 (559)
T ss_pred ceeeeecccceEEeccccccCCCC---------CCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEE
Confidence 455555688899984433321000 00000112334556666655569999775 444 5899999988 99
Q ss_pred EEeeec
Q 039302 464 ILMPSN 469 (479)
Q Consensus 464 iw~~~~ 469 (479)
||+-..
T Consensus 420 iW~K~t 425 (559)
T KOG1334|consen 420 IWDKKT 425 (559)
T ss_pred EEecch
Confidence 998654
No 191
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.1e-15 Score=146.55 Aligned_cols=190 Identities=22% Similarity=0.329 Sum_probs=148.0
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.++|.|+++.+.+ ..+.+|+.||+|+.|++........... ......++.||.+.|+.+++
T Consensus 337 i~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~I~~w~~p~n~dp~ds~d-----------p~vl~~~l~Ghtdavw~l~~ 404 (577)
T KOG0642|consen 337 ILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGTIRCWNLPPNQDPDDSYD-----------PSVLSGTLLGHTDAVWLLAL 404 (577)
T ss_pred eEEEecccCceEEEEecCCc-eEEEeeccCceeeeeccCCCCCcccccC-----------cchhccceeccccceeeeee
Confidence 34889999999999999998 6788999999999999874222111110 12344578899999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCcccc--C--------------------------------------CCCcc----
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNV--D--------------------------------------PNPFI---- 277 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~--~--------------------------------------~~~~~---- 277 (479)
|.... +|++++.||++++|+......... . ...+.
T Consensus 405 s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~ 483 (577)
T KOG0642|consen 405 SSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS 483 (577)
T ss_pred ccccc-ceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC
Confidence 99988 999999999999999865322000 0 00000
Q ss_pred ---cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 278 ---GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 278 ---~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.-...++-+.++|+.. +.+++..|+.|+++|..++. ++....+|...++++++.|++ .+|++|+.||.+++|.+
T Consensus 484 ~~~~~~~~in~vVs~~~~~-~~~~~hed~~Ir~~dn~~~~-~l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 484 PGPRRYPQINKVVSHPTAD-ITFTAHEDRSIRFFDNKTGK-ILHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKL 560 (577)
T ss_pred CcccccCccceEEecCCCC-eeEecccCCceecccccccc-cchheeeccceecceeecCCC-ceEEeecCCceeehhhc
Confidence 0113467788999987 99999999999999999986 788889999999999999999 89999999999999999
Q ss_pred CCCCCCCceEEEeecCC
Q 039302 355 RLLKGGDSVVAHFEYHK 371 (479)
Q Consensus 355 r~~~~~~~~~~~~~~h~ 371 (479)
.... ++.....|.
T Consensus 561 d~k~----~~~es~~~r 573 (577)
T KOG0642|consen 561 DVKT----CVLESTAHR 573 (577)
T ss_pred cchh----eeecccccc
Confidence 7766 555555554
No 192
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.69 E-value=6.8e-15 Score=152.32 Aligned_cols=229 Identities=14% Similarity=0.209 Sum_probs=166.0
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+..+...+..|...|+.++.++....+++|||.||+|++|+......... ..+...++..-...+.
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~--------------s~rS~ltys~~~sr~~ 1102 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGG--------------SARSELTYSPEGSRVE 1102 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcc--------------eeeeeEEEeccCCceE
Confidence 34566677889999999999998778999999999999999987432210 1334455554567899
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc--cc-cCCCC--cccCCCcEEEEEECCCCCc-EEEEEeCCCcEEEEEcC
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT--WN-VDPNP--FIGHAASVEDLQWSPTESD-VFASCSVDGNIAIWDTR 311 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~--~~-~~~~~--~~~h~~~V~~l~~sp~~~~-~l~s~s~dg~I~iwD~~ 311 (479)
++...+.+. .+|.|+.||.|++.++..... .. ...+. .......|..-+|...... .++.+..-+.|..||+|
T Consensus 1103 ~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1103 KVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred EEEeccCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecch
Confidence 999999998 999999999999999976211 10 00111 1122223444455544444 78888899999999999
Q ss_pred CCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCCCC--CEE
Q 039302 312 VGKS-ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPHEG--STL 387 (479)
Q Consensus 312 ~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~~~--~~l 387 (479)
+... -........+.|++++.+|.+ +.+++|+..|.+.+||+|-.. ++.... ++..+|+.+..+|..+ ...
T Consensus 1182 ~~~~~w~lk~~~~hG~vTSi~idp~~-~WlviGts~G~l~lWDLRF~~----~i~sw~~P~~~~i~~v~~~~~~~~~S~~ 1256 (1431)
T KOG1240|consen 1182 MRHDAWRLKNQLRHGLVTSIVIDPWC-NWLVIGTSRGQLVLWDLRFRV----PILSWEHPARAPIRHVWLCPTYPQESVS 1256 (1431)
T ss_pred hhhhHHhhhcCccccceeEEEecCCc-eEEEEecCCceEEEEEeecCc----eeecccCcccCCcceEEeeccCCCCceE
Confidence 8742 112223345679999999999 899999999999999999877 566543 3568899999888655 455
Q ss_pred EEEe--CCCcEEEEECCCCCC
Q 039302 388 AVSS--ADNQLTIWDLSLEKD 406 (479)
Q Consensus 388 as~s--~Dg~I~iwdl~~~~~ 406 (479)
++++ ..+.|.+|++.++.+
T Consensus 1257 vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1257 VSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EEecccCCCceeeeecccCcc
Confidence 5444 478999999988743
No 193
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.69 E-value=2e-15 Score=146.90 Aligned_cols=242 Identities=15% Similarity=0.185 Sum_probs=171.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|+..|+|++|+.+| ..+|+|+.|..|.||.-.- +-+..+ .|++.|.||.|+
T Consensus 47 qtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~kl----------------------EG~LkY-SH~D~IQCMsFN 102 (1081)
T KOG1538|consen 47 QPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKL----------------------EGILKY-SHNDAIQCMSFN 102 (1081)
T ss_pred cccccccceEEEEEEccCC-ceeccCCCceeEEEecccc----------------------cceeee-ccCCeeeEeecC
Confidence 5788999999999999999 8999999999999999664 222333 699999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce-eeEEe
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-LMSFK 321 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-~~~~~ 321 (479)
|-.. .|+||+-+ ..-+|........ .......|.+++|..+|. +|+.|-.+|+|.|-+-....+. +..-.
T Consensus 103 P~~h-~LasCsLs-dFglWS~~qK~V~------K~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpg 173 (1081)
T KOG1538|consen 103 PITH-QLASCSLS-DFGLWSPEQKSVS------KHKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPG 173 (1081)
T ss_pred chHH-Hhhhcchh-hccccChhhhhHH------hhhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCC
Confidence 9987 99999854 6678877543221 111245788999999999 9999999999999754433211 11123
Q ss_pred cCCCCEEEEEEcCCCC----cEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 322 AHNADVNVISWNRLAS----CLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~----~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+.+.+|.+++|+|..+ ..+++.....++.+|.+.... +..-+.-.-...|+++.|++ .++..||.|+.++
T Consensus 174 g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~-----Igk~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~ 247 (1081)
T KOG1538|consen 174 GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ-----IGKDRALNFDPCCISYFTNG-EYILLGGSDKQLS 247 (1081)
T ss_pred CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee-----ecccccCCCCchhheeccCC-cEEEEccCCCceE
Confidence 4678999999999752 367777777777777765432 22222223344689999965 8889999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+|--..- .+-..-.-...|+.++.+|++..+.+.|-++.|-.|++.
T Consensus 248 ~fTR~Gv-------------------------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 248 LFTRDGV-------------------------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEeecCe-------------------------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 9864322 111111212369999999999755554444447777653
No 194
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.68 E-value=9.2e-15 Score=129.80 Aligned_cols=262 Identities=15% Similarity=0.111 Sum_probs=181.8
Q ss_pred EEEecCCcceeEEEEec---CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 163 LRKVAHQGCVNRIRAMS---QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p---~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
++.+.| ..++.+.|+. ++...++-+-..|.|.+|......... ..+++...+-......++
T Consensus 64 ~q~~dt-s~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~---------------~L~~ls~~ki~~~~~lsl 127 (339)
T KOG0280|consen 64 LQCTDT-STEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV---------------HLRGLSSKKISVVEALSL 127 (339)
T ss_pred eeeecc-cccceeeeeeccCCccceeeeccccceEEEEeeccceeee---------------eecccchhhhhheeeeEE
Confidence 344444 4566777764 333366677888999999887632221 112222222222256789
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|++.+. .++++..+|.+.+-+........ .+..+.|..+..-..|+..+++++.+||.|+.+..||+|.++..+..
T Consensus 128 D~~~~~~-~i~vs~s~G~~~~v~~t~~~le~--vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 128 DISTSGT-KIFVSDSRGSISGVYETEMVLEK--VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred EeeccCc-eEEEEcCCCcEEEEecceeeeee--cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 9999998 89999999999966554432222 35688999999999999999999999999999999999966544433
Q ss_pred -EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 320 -FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 320 -~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.|...|.+|.-+|..+.+|+||+.|-.|++||.|+... |+..-. -.+.|+.+.++|.....+..++.-+-.+|
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~k---Pl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki 280 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGK---PLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKI 280 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccC---ccccCc-cccceEEEEecchhhhHHHHHHHhcCceE
Confidence 5779999999999998889999999999999999997765 665544 35899999999976556666667666888
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEc-CCC-ce-EEeee
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTA-ADG-FN-ILMPS 468 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~-~dg-i~-iw~~~ 468 (479)
-+.+....+.. ..+..+..|. -+..-.|... ..++++|+ .|. ++ +|-..
T Consensus 281 ~~~~~~~~e~~--------------------~~~~s~~~hdSl~YG~DWd~~-~~~lATCsFYDk~~~~~Wl~~ 333 (339)
T KOG0280|consen 281 LDSSDKVLEFQ--------------------IVLPSDKIHDSLCYGGDWDSK-DSFLATCSFYDKKIRQLWLHI 333 (339)
T ss_pred EEecccccchh--------------------eeeeccccccceeeccccccc-cceeeeeeccccceeeeeeec
Confidence 88876543200 1233344333 3667778544 34777765 343 23 55443
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.68 E-value=1.8e-15 Score=135.81 Aligned_cols=226 Identities=16% Similarity=0.262 Sum_probs=166.7
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 229 FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
+..-..+|+|.+|+++.. .+|.+-....|.||.....+.|.. ...+..|...|+.|.|+|..+ .|++|+.|..-++|
T Consensus 6 ~~~~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~~-~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayVw 82 (361)
T KOG1523|consen 6 FHRLLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWEP-AHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYVW 82 (361)
T ss_pred eeeccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCcee-ceehhhhCcceeEEeecCCCC-ceeEccCCCCcccc
Confidence 333456999999999998 999999999999999877654443 467889999999999999988 89999999999999
Q ss_pred EcCCCCc--eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCE
Q 039302 309 DTRVGKS--ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGST 386 (479)
Q Consensus 309 D~~~~~~--~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~ 386 (479)
....+.. +...+..++..++++.|+|.+ +.||+|+.-..|.||-+.....-...-+.-+.+...|+++.|+|++ -+
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn-VL 160 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN-VL 160 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCc-ce
Confidence 9965532 566677789999999999999 9999999999999998876553111122334577889999999965 89
Q ss_pred EEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCC-CceEEee-cCCCCeeeEEEeCCCCcEEEEEcCCC-ce
Q 039302 387 LAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLP-PQLLFIH-QGQKDLKELHWHTQVPGMIVSTAADG-FN 463 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~l~~~h-~g~~~V~~v~w~p~~~~ll~s~~~dg-i~ 463 (479)
|++||.|+.++|+..-...-.+.. ....-....| .+++... .....|..+.|+|+|. .|+-.+.|+ +.
T Consensus 161 laaGs~D~k~rVfSayIK~Vdekp--------ap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~-~lawv~Hds~v~ 231 (361)
T KOG1523|consen 161 LAAGSTDGKCRVFSAYIKGVDEKP--------APTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN-RLAWVGHDSTVS 231 (361)
T ss_pred ecccccCcceeEEEEeeeccccCC--------CCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC-EeeEecCCCceE
Confidence 999999999999987544321110 0011111222 2344433 2224699999999997 555555554 66
Q ss_pred EEeee
Q 039302 464 ILMPS 468 (479)
Q Consensus 464 iw~~~ 468 (479)
+-+..
T Consensus 232 ~~da~ 236 (361)
T KOG1523|consen 232 FVDAA 236 (361)
T ss_pred EeecC
Confidence 65543
No 196
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.66 E-value=4.6e-15 Score=129.73 Aligned_cols=162 Identities=17% Similarity=0.275 Sum_probs=127.7
Q ss_pred CCceEEEEeCCCCCC--eEEEEeCCCeEEEEecCCCCccc------cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc
Q 039302 233 KDEGYAIDWNPVAPG--RLVSGDCNSCIHLWEPASDATWN------VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN 304 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~--~l~sg~~dg~I~lwd~~~~~~~~------~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~ 304 (479)
.+.+.|..|-..... +|++|-.+|.+.+||+.++.... ........|..+|.++.+.+.-. .=++|+.+..
T Consensus 150 lgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~-rGisgga~dk 228 (323)
T KOG0322|consen 150 LGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCD-RGISGGADDK 228 (323)
T ss_pred cCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhc-CCcCCCcccc
Confidence 346667775443322 68889999999999998853211 11234567999999999987554 5678888889
Q ss_pred EEEEEcCCCCc--ee-eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeC
Q 039302 305 IAIWDTRVGKS--AL-MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 305 I~iwD~~~~~~--~~-~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp 381 (479)
+..|.+..... .+ ......+-.|+.+..-|++ ++|||++.|+.|+||..|+.. ++..++.|++.|++++|+|
T Consensus 229 l~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~----pLAVLkyHsagvn~vAfsp 303 (323)
T KOG0322|consen 229 LVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLN----PLAVLKYHSAGVNAVAFSP 303 (323)
T ss_pred ceeeeeccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCC----chhhhhhhhcceeEEEeCC
Confidence 99999875421 11 1223344578999999999 999999999999999999999 8999999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEEC
Q 039302 382 HEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwdl 401 (479)
+. .++|++|.|++|.+|+|
T Consensus 304 d~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 304 DC-ELMAAASKDARISLWKL 322 (323)
T ss_pred CC-chhhhccCCceEEeeec
Confidence 65 89999999999999987
No 197
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.6e-15 Score=146.14 Aligned_cols=206 Identities=15% Similarity=0.250 Sum_probs=165.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeC---CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWAD---TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
...+.|...|+.+.|+..| .+|||... ...|.|+++... ....-|+...+-+.++
T Consensus 515 ~~~I~~~k~i~~vtWHrkG-DYlatV~~~~~~~~VliHQLSK~---------------------~sQ~PF~kskG~vq~v 572 (733)
T KOG0650|consen 515 CIVIKHPKSIRQVTWHRKG-DYLATVMPDSGNKSVLIHQLSKR---------------------KSQSPFRKSKGLVQRV 572 (733)
T ss_pred EEEEecCCccceeeeecCC-ceEEEeccCCCcceEEEEecccc---------------------cccCchhhcCCceeEE
Confidence 4678999999999999999 56665544 356889999872 3334455556789999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
.|+|... +|++++ ...|+|||+..... . ..+......|..++.+|.|. .++.|+.|+.+..+|+.-..++..+
T Consensus 573 ~FHPs~p-~lfVaT-q~~vRiYdL~kqel-v---KkL~tg~kwiS~msihp~GD-nli~gs~d~k~~WfDldlsskPyk~ 645 (733)
T KOG0650|consen 573 KFHPSKP-YLFVAT-QRSVRIYDLSKQEL-V---KKLLTGSKWISSMSIHPNGD-NLILGSYDKKMCWFDLDLSSKPYKT 645 (733)
T ss_pred EecCCCc-eEEEEe-ccceEEEehhHHHH-H---HHHhcCCeeeeeeeecCCCC-eEEEecCCCeeEEEEcccCcchhHH
Confidence 9999998 888887 56999999976322 1 23334456789999999998 6888999999999999988778889
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC-----CCCceEEEeecCCCC----eEEEEEeCCCCCEEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK-----GGDSVVAHFEYHKHP----VTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~-----~~~~~~~~~~~h~~~----I~~v~~sp~~~~~las~ 390 (479)
+.-|...+.+++|++.- .+|++|++||++.|+.-+-.. ..-.|+..+.+|... |..+.|+|.. .+|+++
T Consensus 646 lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q-pWLfsA 723 (733)
T KOG0650|consen 646 LRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSA 723 (733)
T ss_pred hhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC-ceEEec
Confidence 99999999999999988 899999999999998644221 112467788888766 9999999976 889999
Q ss_pred eCCCcEEEE
Q 039302 391 SADNQLTIW 399 (479)
Q Consensus 391 s~Dg~I~iw 399 (479)
+.||+|++|
T Consensus 724 GAd~tirlf 732 (733)
T KOG0650|consen 724 GADGTIRLF 732 (733)
T ss_pred CCCceEEee
Confidence 999999998
No 198
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=1.2e-14 Score=133.44 Aligned_cols=235 Identities=13% Similarity=0.087 Sum_probs=166.1
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc--CC-CCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV--DP-NPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~--~~-~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+.+|.+.|.+|.|+.++. +|++|+.|..+++|++...-...+ ++ ..-..|.+.|.|++|.-.+. .+.+|+.++
T Consensus 50 KD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~-~~~SG~~~~ 127 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR-FLYSGERWG 127 (609)
T ss_pred hhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe-eEecCCCcc
Confidence 44678999999999999987 999999999999999864211111 01 11234668999999998777 999999999
Q ss_pred cEEEEEcCCCCceeeEEecCC---CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 304 NIAIWDTRVGKSALMSFKAHN---ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
+|.+.|+.+.+ .+ .+.+|. +.|..+..+|.. +.|++.+.++.|.+||.|.......++. .........++.|+
T Consensus 128 ~VI~HDiEt~q-si-~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~F~ 203 (609)
T KOG4227|consen 128 TVIKHDIETKQ-SI-YVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFIDNRDRQNPISLVL-PANSGKNFYTAEFH 203 (609)
T ss_pred eeEeeecccce-ee-eeecccCcccceeecccCCCC-ceEEEEecCceEEEEeccCCCCCCceee-ecCCCccceeeeec
Confidence 99999999875 33 333444 489999999997 9999999999999999998764333333 22345677899999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHH-Hhh---------------hcccccCCCCCCCCceEEeecCCC-----
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAE-FKA---------------KTREQVNAPEDLPPQLLFIHQGQK----- 439 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~-~~~---------------~~~~~~~~~~~~p~~l~~~h~g~~----- 439 (479)
|-.+.+|++.+.-+-+.+||.+....+.-... +++ ...+........||.++-.|....
T Consensus 204 P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~ 283 (609)
T KOG4227|consen 204 PETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKS 283 (609)
T ss_pred CCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEec
Confidence 99999999999999999999998765422111 110 001111222345555444444111
Q ss_pred -----------CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 440 -----------DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 440 -----------~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.+++++|--+ +-+++|+++- |++|++.-
T Consensus 284 D~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 284 DHNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred cCCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCC
Confidence 2555566544 3477887775 99999853
No 199
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=1.9e-15 Score=139.53 Aligned_cols=173 Identities=21% Similarity=0.392 Sum_probs=141.7
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
-..+|..+.|.++....+|||+.|..|+||.+......... .....+..+..|...|+++.|+|+++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~------------~~V~y~s~Ls~H~~aVN~vRf~p~ge- 78 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD------------MKVEYLSSLSRHTRAVNVVRFSPDGE- 78 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc------------eeEEEeecccCCcceeEEEEEcCCcC-
Confidence 44689999999988669999999999999999874221100 02345567889999999999999998
Q ss_pred eEEEEeCCCeEEEEecC--------C-----CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 248 RLVSGDCNSCIHLWEPA--------S-----DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~--------~-----~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.||||+.+|.|.+|... + ...|.+ ...+.+|...|.+++|+|++. ++++++.|.++++||++.+.
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v-~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVV-KKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEE-EEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccce
Confidence 99999999999999876 2 112322 344667999999999999998 99999999999999999996
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
....+..|...+..++|.|.+ .++++-+.|...+++.+...
T Consensus 157 -l~~~~~dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~ 197 (434)
T KOG1009|consen 157 -LLAILDDHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLK 197 (434)
T ss_pred -eEeeccccccccceeecchhh-hhhhhhccCcccceeeeeee
Confidence 677789999999999999999 89999888887777766543
No 200
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=4.6e-16 Score=145.74 Aligned_cols=233 Identities=17% Similarity=0.234 Sum_probs=179.4
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
-...|..+.|..+. .++|. .....++|||-.. ..++.++.|. +|..|.|.|..-
T Consensus 169 v~Etv~Dv~~LHne-q~~AV-AQK~y~yvYD~~G----------------------tElHClk~~~-~v~rLeFLPyHf- 222 (545)
T KOG1272|consen 169 VMETVRDVTFLHNE-QFFAV-AQKKYVYVYDNNG----------------------TELHCLKRHI-RVARLEFLPYHF- 222 (545)
T ss_pred hhhhhhhhhhhcch-HHHHh-hhhceEEEecCCC----------------------cEEeehhhcC-chhhhcccchhh-
Confidence 34678888998877 67777 5667899999654 5566666554 799999999986
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+|++++..|.++--|+.+++.. ..+..-.+.+..++-+|-+. ++-+|...|+|.+|.-.... ++..+..|.++|
T Consensus 223 LL~~~~~~G~L~Y~DVS~GklV----a~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~ske-PLvKiLcH~g~V 296 (545)
T KOG1272|consen 223 LLVAASEAGFLKYQDVSTGKLV----ASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNSKE-PLVKILCHRGPV 296 (545)
T ss_pred eeeecccCCceEEEeechhhhh----HHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCCcc-hHHHHHhcCCCc
Confidence 8999999999999999887652 33444567888889999988 99999999999999988765 788888999999
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
.+|++.+.| .++||.+.|..++|||+|+.. .+.++.. ..+...+++|..+ ++++|....|.||.=.....
T Consensus 297 ~siAv~~~G-~YMaTtG~Dr~~kIWDlR~~~----ql~t~~t-p~~a~~ls~Sqkg---lLA~~~G~~v~iw~d~~~~s- 366 (545)
T KOG1272|consen 297 SSIAVDRGG-RYMATTGLDRKVKIWDLRNFY----QLHTYRT-PHPASNLSLSQKG---LLALSYGDHVQIWKDALKGS- 366 (545)
T ss_pred ceEEECCCC-cEEeecccccceeEeeecccc----ccceeec-CCCcccccccccc---ceeeecCCeeeeehhhhcCC-
Confidence 999999999 999999999999999999987 3555444 4567788888633 55556667899995433210
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
.........|.....|.++.|+|-.. +|..|...|
T Consensus 367 ------------------~~~~~pYm~H~~~~~V~~l~FcP~ED-vLGIGH~~G 401 (545)
T KOG1272|consen 367 ------------------GHGETPYMNHRCGGPVEDLRFCPYED-VLGIGHAGG 401 (545)
T ss_pred ------------------CCCCcchhhhccCcccccceeccHHH-eeeccccCC
Confidence 01123455566555899999999874 666666666
No 201
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=3.6e-14 Score=136.40 Aligned_cols=271 Identities=15% Similarity=0.222 Sum_probs=185.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccC-----CCCC--ccccCCCcEEecCCC--
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAG-----HGAP--QVLNQSPLVKFGGHK-- 233 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~h~-- 233 (479)
++-+.|+...++|..+|+|.+++|||...-.|++||+....-.+...-.... ...+ +..-.+.-.++.-|.
T Consensus 45 iQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~ 124 (703)
T KOG2321|consen 45 IQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKY 124 (703)
T ss_pred HHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhc
Confidence 5667899999999999999999999999999999999875433322110000 0000 000001111111121
Q ss_pred ---------CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc
Q 039302 234 ---------DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN 304 (479)
Q Consensus 234 ---------~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~ 304 (479)
..+..|+++.-.. -|+.++....|+-+++..+.- ..++....+.+++|..++.+. +|++|+.+|.
T Consensus 125 G~hy~~RIP~~GRDm~y~~~sc-Dly~~gsg~evYRlNLEqGrf----L~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~ 198 (703)
T KOG2321|consen 125 GRHYRTRIPKFGRDMKYHKPSC-DLYLVGSGSEVYRLNLEQGRF----LNPFETDSGELNVVSINEEHG-LLACGTEDGV 198 (703)
T ss_pred CeeeeeecCcCCccccccCCCc-cEEEeecCcceEEEEcccccc----ccccccccccceeeeecCccc-eEEecccCce
Confidence 2345666665554 455555566888888877543 356777778999999999988 9999999999
Q ss_pred EEEEEcCCCCceeeEE------ecCCC-----CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC
Q 039302 305 IAIWDTRVGKSALMSF------KAHNA-----DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP 373 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~------~~h~~-----~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~ 373 (479)
|..||.|... .+.++ ..|.. .|+++.|+.++ -.+++|+.+|.|.|||||..++ .+..-.+..-+
T Consensus 199 VEfwDpR~ks-rv~~l~~~~~v~s~pg~~~~~svTal~F~d~g-L~~aVGts~G~v~iyDLRa~~p---l~~kdh~~e~p 273 (703)
T KOG2321|consen 199 VEFWDPRDKS-RVGTLDAASSVNSHPGGDAAPSVTALKFRDDG-LHVAVGTSTGSVLIYDLRASKP---LLVKDHGYELP 273 (703)
T ss_pred EEEecchhhh-hheeeecccccCCCccccccCcceEEEecCCc-eeEEeeccCCcEEEEEcccCCc---eeecccCCccc
Confidence 9999999874 23332 23333 39999999987 8999999999999999999884 33334445678
Q ss_pred eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
|..+.|.+.+..--+.+.....++|||-..++. +..-....+++++++-|.. +|
T Consensus 274 i~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~-------------------------~asiEpt~~lND~C~~p~s-Gm 327 (703)
T KOG2321|consen 274 IKKLDWQDTDQQNKVVSMDKRILKIWDECTGKP-------------------------MASIEPTSDLNDFCFVPGS-GM 327 (703)
T ss_pred eeeecccccCCCceEEecchHHhhhcccccCCc-------------------------eeeccccCCcCceeeecCC-ce
Confidence 999999886433333334456889999887742 2222223469999999987 57
Q ss_pred EEEEcCCC-ceEEeeecc
Q 039302 454 IVSTAADG-FNILMPSNI 470 (479)
Q Consensus 454 l~s~~~dg-i~iw~~~~~ 470 (479)
+..+.+++ +..|-+..+
T Consensus 328 ~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 328 FFTANESSKMHTYYIPSL 345 (703)
T ss_pred EEEecCCCcceeEEcccc
Confidence 77777776 555554443
No 202
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=9.1e-14 Score=140.09 Aligned_cols=262 Identities=13% Similarity=0.131 Sum_probs=180.9
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
..|.-.+++.+++|.+ .++|+|..||.|.+|.--.... .......+.-|..+|.+++|+++|
T Consensus 202 ~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~-----------------~~~t~t~lHWH~~~V~~L~fS~~G 263 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSD-----------------DSETCTLLHWHHDEVNSLSFSSDG 263 (792)
T ss_pred hhhcccceeEEecccc-ceEEEeccCCcEEEEecccccc-----------------ccccceEEEecccccceeEEecCC
Confidence 3577779999999999 8999999999999997443100 123345677799999999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--eeeEEe--
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--ALMSFK-- 321 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~~~~~~-- 321 (479)
. +|+||+..|.+.+|.+.+++. +.+..-.++|..+.++|++. +++.+..|..|.+....+... .+..+.
T Consensus 264 ~-~LlSGG~E~VLv~Wq~~T~~k-----qfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 264 A-YLLSGGREGVLVLWQLETGKK-----QFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred c-eEeecccceEEEEEeecCCCc-----ccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCC
Confidence 8 999999999999999988764 33555678999999999998 788888899999987754421 111111
Q ss_pred ------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCC----------------------------------
Q 039302 322 ------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGD---------------------------------- 361 (479)
Q Consensus 322 ------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~---------------------------------- 361 (479)
...+-.+.++++|.- +.++-.+..|.|.+||+-+.....
T Consensus 337 ~~~~k~~~~~l~t~~~idpr~-~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT 415 (792)
T KOG1963|consen 337 TPSTKTRPQSLTTGVSIDPRT-NSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMAT 415 (792)
T ss_pred CccccccccccceeEEEcCCC-CceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEE
Confidence 123445677888844 667777788888888876443200
Q ss_pred -----------------------------ceEE-EeecCCCCeEEEEEe-CCCCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 362 -----------------------------SVVA-HFEYHKHPVTSIEWS-PHEGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 362 -----------------------------~~~~-~~~~h~~~I~~v~~s-p~~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
.... ....|...+...++. |.....+++++.||.++||-+....+.
T Consensus 416 ~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~--- 492 (792)
T KOG1963|consen 416 LEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI--- 492 (792)
T ss_pred eeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc---
Confidence 0000 011355554444443 333338999999999999999654321
Q ss_pred HHHhhhcccccCCCCCCCC-ceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 411 AEFKAKTREQVNAPEDLPP-QLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~-~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
......- +....+-+..+++.++|+.+|. +|+.+.++.|.+|+..+
T Consensus 493 ------------~k~~s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 493 ------------YKKSSNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDYDT 539 (792)
T ss_pred ------------CcCccceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecCCC
Confidence 0111111 2223333335799999999994 77777777799999877
No 203
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=3.3e-14 Score=142.95 Aligned_cols=215 Identities=18% Similarity=0.155 Sum_probs=142.8
Q ss_pred CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCC---CeEEEEecCCCC
Q 039302 191 TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN---SCIHLWEPASDA 267 (479)
Q Consensus 191 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~d---g~I~lwd~~~~~ 267 (479)
+..|+|||... .. ...+..|...+...+|+|++. +|+.++.+ ..|++||+.++.
T Consensus 183 ~~~i~i~d~dg---------------------~~-~~~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~ 239 (429)
T PRK01742 183 PYEVRVADYDG---------------------FN-QFIVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGA 239 (429)
T ss_pred eEEEEEECCCC---------------------CC-ceEeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCc
Confidence 46899999876 22 345667788899999999998 88877643 379999997754
Q ss_pred ccccCCCCcccCCCcEEEEEECCCCCcEEEE-EeCCCcEEEE--EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe
Q 039302 268 TWNVDPNPFIGHAASVEDLQWSPTESDVFAS-CSVDGNIAIW--DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS 344 (479)
Q Consensus 268 ~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s-~s~dg~I~iw--D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs 344 (479)
...+ ..+.+| ...++|+|+++ .|+. .+.+|.+.|| |+.++. ...+..+...+...+|+|++..+++++.
T Consensus 240 ~~~l--~~~~g~---~~~~~wSPDG~-~La~~~~~~g~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 240 RKVV--ASFRGH---NGAPAFSPDGS-RLAFASSKDGVLNIYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred eEEE--ecCCCc---cCceeECCCCC-EEEEEEecCCcEEEEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 3221 223344 34689999998 5555 4578876666 555443 4455666777889999999944555555
Q ss_pred CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCC
Q 039302 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAP 424 (479)
Q Consensus 345 ~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 424 (479)
.+|...||++..... ....+ .+.. ..+.|+|++ ..|+.++.++ +.+||+..+..
T Consensus 312 ~~g~~~I~~~~~~~~---~~~~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~~------------------ 365 (429)
T PRK01742 312 RSGSPQVYRMSASGG---GASLV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGST------------------ 365 (429)
T ss_pred CCCCceEEEEECCCC---CeEEe-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCCe------------------
Confidence 678889998765432 22222 3333 467899966 7777776654 66699876631
Q ss_pred CCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 425 EDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 425 ~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
..+... .....+.|+|++..+++++.+++..+|.+.+.
T Consensus 366 -----~~lt~~---~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~ 403 (429)
T PRK01742 366 -----EVLSST---FLDESPSISPNGIMIIYSSTQGLGKVLQLVSA 403 (429)
T ss_pred -----EEecCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEEC
Confidence 111111 12356789999986666666555888887654
No 204
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=5.8e-14 Score=141.21 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=131.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
.+..|...+...+|+|++..++.+... +..|++||+... ..+.+..+.+|. .+++|
T Consensus 198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg-------------------~~~~l~~~~g~~---~~~~w 255 (429)
T PRK01742 198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG-------------------ARKVVASFRGHN---GAPAF 255 (429)
T ss_pred EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC-------------------ceEEEecCCCcc---CceeE
Confidence 356788899999999999555443322 247999998762 112233344443 46899
Q ss_pred CCCCCCeEEEE-eCCCeEEEE--ecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 242 NPVAPGRLVSG-DCNSCIHLW--EPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 242 s~~~~~~l~sg-~~dg~I~lw--d~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+|++. +|+.+ +.+|.+.|| |+.++.. ..+..+...+.+.+|+|+++.+++++..+|...||++........
T Consensus 256 SPDG~-~La~~~~~~g~~~Iy~~d~~~~~~-----~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~ 329 (429)
T PRK01742 256 SPDGS-RLAFASSKDGVLNIYVMGANGGTP-----SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS 329 (429)
T ss_pred CCCCC-EEEEEEecCCcEEEEEEECCCCCe-----EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence 99998 77765 468876655 5544322 234456667889999999994444555678899998765432222
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+ .+.. ...+|+|++ ..|+..+.++ +.+||+.++. .......+ ...++.|+|++ .+|+.++.++.+.+
T Consensus 330 ~l-~~~~--~~~~~SpDG-~~ia~~~~~~-i~~~Dl~~g~----~~~lt~~~--~~~~~~~sPdG-~~i~~~s~~g~~~~ 397 (429)
T PRK01742 330 LV-GGRG--YSAQISADG-KTLVMINGDN-VVKQDLTSGS----TEVLSSTF--LDESPSISPNG-IMIIYSSTQGLGKV 397 (429)
T ss_pred Ee-cCCC--CCccCCCCC-CEEEEEcCCC-EEEEECCCCC----eEEecCCC--CCCCceECCCC-CEEEEEEcCCCceE
Confidence 22 3333 457899999 6777766655 5569998776 22222222 34578899965 88998888998888
Q ss_pred EECC
Q 039302 399 WDLS 402 (479)
Q Consensus 399 wdl~ 402 (479)
|.+.
T Consensus 398 l~~~ 401 (429)
T PRK01742 398 LQLV 401 (429)
T ss_pred EEEE
Confidence 8864
No 205
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=2.7e-13 Score=124.13 Aligned_cols=235 Identities=14% Similarity=0.209 Sum_probs=163.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.++.+.|..+. .+|+.|+.+| -++|..... .+. .........|.-+-|+.. ++|
T Consensus 7 ti~~~~~Nqd~-~~lsvGs~~G-yk~~~~~~~--------------------~k~-~~~~~~~~~IvEmLFSSS---Lva 60 (391)
T KOG2110|consen 7 TINFIGFNQDS-TLLSVGSKDG-YKIFSCSPF--------------------EKC-FSKDTEGVSIVEMLFSSS---LVA 60 (391)
T ss_pred ceeeeeeccce-eEEEccCCCc-eeEEecCch--------------------HHh-hcccCCCeEEEEeecccc---eeE
Confidence 45555677766 7888988887 578887762 121 111111224555666653 555
Q ss_pred EEeCC--CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE---ecCCC
Q 039302 251 SGDCN--SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF---KAHNA 325 (479)
Q Consensus 251 sg~~d--g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~---~~h~~ 325 (479)
..+.+ ..+++.+++...... ..+ ...+|.++.++.+ .|+++-.+. |.|||++..+ .+.++ ..+..
T Consensus 61 iV~~~qpr~Lkv~~~Kk~~~IC---e~~--fpt~IL~VrmNr~---RLvV~Lee~-IyIydI~~Mk-lLhTI~t~~~n~~ 130 (391)
T KOG2110|consen 61 IVSIKQPRKLKVVHFKKKTTIC---EIF--FPTSILAVRMNRK---RLVVCLEES-IYIYDIKDMK-LLHTIETTPPNPK 130 (391)
T ss_pred EEecCCCceEEEEEcccCceEE---EEe--cCCceEEEEEccc---eEEEEEccc-EEEEecccce-eehhhhccCCCcc
Confidence 44433 358888886643311 111 2457899998754 566666554 9999999986 55555 34566
Q ss_pred CEEEEEEcCCCCcEEEEEe--CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc-EEEEECC
Q 039302 326 DVNVISWNRLASCLLASGS--DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ-LTIWDLS 402 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs--~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~-I~iwdl~ 402 (479)
.+.++++++.+ .+||.-+ ..|.|.|||+.+.+ ++..+..|.+++.+++|+|++ .+|||+|+.|+ |+|+.+.
T Consensus 131 gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~----~v~~I~aH~~~lAalafs~~G-~llATASeKGTVIRVf~v~ 204 (391)
T KOG2110|consen 131 GLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQ----PVNTINAHKGPLAALAFSPDG-TLLATASEKGTVIRVFSVP 204 (391)
T ss_pred ceEeeccCCCC-ceEEecCCCCCceEEEEEcccce----eeeEEEecCCceeEEEECCCC-CEEEEeccCceEEEEEEcC
Confidence 68888888777 6777543 45899999999998 899999999999999999955 99999999996 5899998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC--CeeeEEEeCCCCcEEEEEcCCCceEEeeeccC
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK--DLKELHWHTQVPGMIVSTAADGFNILMPSNIQ 471 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~--~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~~ 471 (479)
.+. .+.....|.. .|.+++|||+.+.|.+++..+.|+||++....
T Consensus 205 ~G~------------------------kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 205 EGQ------------------------KLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred Ccc------------------------EeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 773 2223333333 49999999999855555555559999998874
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.63 E-value=1e-15 Score=143.46 Aligned_cols=232 Identities=16% Similarity=0.228 Sum_probs=183.5
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..-..+.++.+|.+++ .|+..|.|-.+|..+ .+....+. -...|.++.|..+.. +|
T Consensus 130 FGPY~~~ytrnGrhll-lgGrKGHlAa~Dw~t---------------------~~L~~Ei~-v~Etv~Dv~~LHneq-~~ 185 (545)
T KOG1272|consen 130 FGPYHLDYTRNGRHLL-LGGRKGHLAAFDWVT---------------------KKLHFEIN-VMETVRDVTFLHNEQ-FF 185 (545)
T ss_pred cCCeeeeecCCccEEE-ecCCccceeeeeccc---------------------ceeeeeee-hhhhhhhhhhhcchH-HH
Confidence 4567899999995554 668899999999987 44444443 244788999988775 66
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
|++- ...++|||-..... ..+..| ..|..+.|-|..- +|++++..|.++.-|+.+++ .+..+....+.+..
T Consensus 186 AVAQ-K~y~yvYD~~GtEl-----HClk~~-~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~~G~~~v 256 (545)
T KOG1272|consen 186 AVAQ-KKYVYVYDNNGTEL-----HCLKRH-IRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGK-LVASIRTGAGRTDV 256 (545)
T ss_pred Hhhh-hceEEEecCCCcEE-----eehhhc-Cchhhhcccchhh-eeeecccCCceEEEeechhh-hhHHHHccCCccch
Confidence 6654 77999999643222 223333 5788999999887 99999999999999999996 67777777889999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHH
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEE 409 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~ 409 (479)
++-||.+ ..+-+|...|+|.+|...+.. ++..+-.|.++|.+|++.+. |+++||+|.|..|+|||++...
T Consensus 257 m~qNP~N-aVih~GhsnGtVSlWSP~ske----PLvKiLcH~g~V~siAv~~~-G~YMaTtG~Dr~~kIWDlR~~~---- 326 (545)
T KOG1272|consen 257 MKQNPYN-AVIHLGHSNGTVSLWSPNSKE----PLVKILCHRGPVSSIAVDRG-GRYMATTGLDRKVKIWDLRNFY---- 326 (545)
T ss_pred hhcCCcc-ceEEEcCCCceEEecCCCCcc----hHHHHHhcCCCcceEEECCC-CcEEeecccccceeEeeecccc----
Confidence 9999999 899999999999999998877 78888889999999999995 4999999999999999999874
Q ss_pred HHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 410 EAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
++...+. ..+...+++|-.+ +||.+-.+.+.||+-
T Consensus 327 --------------------ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d 361 (545)
T KOG1272|consen 327 --------------------QLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIWKD 361 (545)
T ss_pred --------------------ccceeec-CCCcccccccccc--ceeeecCCeeeeehh
Confidence 2333333 2357788888764 677776677999964
No 207
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=2.7e-13 Score=126.23 Aligned_cols=199 Identities=19% Similarity=0.267 Sum_probs=139.5
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
.+++|+.++. .|++|+.||++|+|+...... ......|.+.|.++.|+|+++ +|++-+.| ..+||+++++. +
T Consensus 148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t----~l~e~~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~-~ 219 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLT----ILEEIAHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGA-A 219 (398)
T ss_pred eEEEEcCCCC-EeeeccccceEEEEecCcchh----hhhhHhhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCc-h
Confidence 6899999997 999999999999999654333 244667889999999999999 99999999 99999999984 3
Q ss_pred eeEEe--cCCCCEEEEEEcCCC---CcEEEEE-eCCCeEEEEeCCCCCCCCce--EEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 317 LMSFK--AHNADVNVISWNRLA---SCLLASG-SDDGTFSIHDLRLLKGGDSV--VAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 317 ~~~~~--~h~~~v~~l~~~p~~---~~~l~sg-s~dg~i~iwDlr~~~~~~~~--~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
+.... .....+..+.|+.++ ..+|++. ..-+.|+.||+...... .. ......-...|++++.++++ .++|
T Consensus 220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l~~~~~~~~~~siSsl~VS~dG-kf~A 297 (398)
T KOG0771|consen 220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFLRLRKKIKRFKSISSLAVSDDG-KFLA 297 (398)
T ss_pred hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-cccchhhhhhccCcceeEEEcCCC-cEEE
Confidence 33332 223345667776654 2234433 33456777777655421 11 11122234579999999955 9999
Q ss_pred EEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe-ecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 389 VSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI-HQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
.|+.||.|.|++....+. +.+. +.+..-|+++.|+|+...+.-..++....|.++
T Consensus 298 lGT~dGsVai~~~~~lq~------------------------~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSLQR------------------------LQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred EeccCCcEEEEEeceeee------------------------eEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 999999999999987742 2222 222236999999999864444334444777776
Q ss_pred ec
Q 039302 468 SN 469 (479)
Q Consensus 468 ~~ 469 (479)
.-
T Consensus 354 ~v 355 (398)
T KOG0771|consen 354 AV 355 (398)
T ss_pred ee
Confidence 53
No 208
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.60 E-value=3.2e-14 Score=135.63 Aligned_cols=173 Identities=17% Similarity=0.308 Sum_probs=132.7
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
.|+.+++||.+.|.+-.. .. -+....|.+.+.+-.|+|+|. -|++++.||.|+||.-... ...++......|
T Consensus 77 ~~~i~s~DGkf~il~k~~-rV----E~sv~AH~~A~~~gRW~~dGt-gLlt~GEDG~iKiWSrsGM--LRStl~Q~~~~v 148 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKSA-RV----ERSISAHAAAISSGRWSPDGA-GLLTAGEDGVIKIWSRSGM--LRSTVVQNEESI 148 (737)
T ss_pred eEEEEcCCceEEEecccc-hh----hhhhhhhhhhhhhcccCCCCc-eeeeecCCceEEEEeccch--HHHHHhhcCcee
Confidence 788999999999987533 22 255788999999999999999 8999999999999975432 222334456789
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
.|++|.|+..+.+.+.+ +.+.|=-+.... .+...++|.+-|.++.|+|.+ .++++||+|-..+|||-...
T Consensus 149 ~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~----k~i~WkAHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G~--- 218 (737)
T KOG1524|consen 149 RCARWAPNSNSIVFCQG--GHISIKPLAANS----KIIRWRAHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQGA--- 218 (737)
T ss_pred EEEEECCCCCceEEecC--CeEEEeeccccc----ceeEEeccCcEEEEeecCccc-cceeecCCceeEEeecccCc---
Confidence 99999999977777655 455555555544 567789999999999999976 99999999999999997543
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCCce
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADGFN 463 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dgi~ 463 (479)
.+|....|. +|++++|+|+ .+++.++.+.++
T Consensus 219 -----------------------~Lf~S~~~ey~ITSva~npd--~~~~v~S~nt~R 250 (737)
T KOG1524|consen 219 -----------------------NLFTSAAEEYAITSVAFNPE--KDYLLWSYNTAR 250 (737)
T ss_pred -----------------------ccccCChhccceeeeeeccc--cceeeeeeeeee
Confidence 244434333 7999999999 356666665444
No 209
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=2.5e-14 Score=136.45 Aligned_cols=164 Identities=19% Similarity=0.330 Sum_probs=132.3
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc-----c---------cc----------CCCCcccCCCcEEEEEEC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT-----W---------NV----------DPNPFIGHAASVEDLQWS 289 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~-----~---------~~----------~~~~~~~h~~~V~~l~~s 289 (479)
..|+|+.|-|.+.+.++.+-.+|.++++|...... + .+ +...+.--.+.|+.++|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 68999999999988999999999999997632100 0 00 001111224578999999
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec
Q 039302 290 PTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 290 p~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
|+++ +||+.|.||.+||||..+.. .+..++..-+...|++|+|++ ++|++|+.|-.|.||.+...+ .+..-.+
T Consensus 300 ~DG~-~LA~VSqDGfLRvF~fdt~e-Llg~mkSYFGGLLCvcWSPDG-KyIvtGGEDDLVtVwSf~erR----VVARGqG 372 (636)
T KOG2394|consen 300 PDGK-YLATVSQDGFLRIFDFDTQE-LLGVMKSYFGGLLCVCWSPDG-KYIVTGGEDDLVTVWSFEERR----VVARGQG 372 (636)
T ss_pred CCCc-eEEEEecCceEEEeeccHHH-HHHHHHhhccceEEEEEcCCc-cEEEecCCcceEEEEEeccce----EEEeccc
Confidence 9999 99999999999999999864 444455566789999999999 999999999999999998877 8999999
Q ss_pred CCCCeEEEEEeCC-----------------------------------------------CCCEEEEEeCCCcEEEEECC
Q 039302 370 HKHPVTSIEWSPH-----------------------------------------------EGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 370 h~~~I~~v~~sp~-----------------------------------------------~~~~las~s~Dg~I~iwdl~ 402 (479)
|+.+|+.|+|.|. -.+.|.+.+.|-++++||+.
T Consensus 373 HkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlt 452 (636)
T KOG2394|consen 373 HKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLT 452 (636)
T ss_pred cccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecc
Confidence 9999999999841 01468889999999999997
Q ss_pred CC
Q 039302 403 LE 404 (479)
Q Consensus 403 ~~ 404 (479)
..
T Consensus 453 eD 454 (636)
T KOG2394|consen 453 ED 454 (636)
T ss_pred hh
Confidence 54
No 210
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=7.2e-13 Score=120.99 Aligned_cols=255 Identities=17% Similarity=0.247 Sum_probs=161.1
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~~ 247 (479)
...+..++|++.- .-+|++..|-.|++|+-+. .....++ .....|.||+|-|.+..
T Consensus 98 ~~dlr~~aWhqH~-~~fava~nddvVriy~kss----------------------t~pt~Lks~sQrnvtclawRPlsas 154 (445)
T KOG2139|consen 98 EIDLRGVAWHQHI-IAFAVATNDDVVRIYDKSS----------------------TCPTKLKSVSQRNVTCLAWRPLSAS 154 (445)
T ss_pred hcceeeEeechhh-hhhhhhccCcEEEEeccCC----------------------CCCceecchhhcceeEEEeccCCcc
Confidence 3567788999855 5677889999999999776 1112222 23458999999999886
Q ss_pred eEEEEeCCCeEEEEecCCCCcccc----------CCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCce
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNV----------DPNPFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRVGKSA 316 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~----------~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~~~~~ 316 (479)
.|+.|+ -+-|+||.......... ......+| .+|++++|.+++. .+++++ .|..|.|||..++...
T Consensus 155 elavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~ 231 (445)
T KOG2139|consen 155 ELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKI 231 (445)
T ss_pred eeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCcc
Confidence 676666 67899998754322111 11123345 6899999999998 777766 5788999999988532
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
... ....+.+.-+.|+|++ .+|+++.-|+..++|.....-. ...-.- -.+.|....|+|.+..+|++++..-
T Consensus 232 pL~-~~glgg~slLkwSPdg-d~lfaAt~davfrlw~e~q~wt---~erw~l-gsgrvqtacWspcGsfLLf~~sgsp-- 303 (445)
T KOG2139|consen 232 PLI-PKGLGGFSLLKWSPDG-DVLFAATCDAVFRLWQENQSWT---KERWIL-GSGRVQTACWSPCGSFLLFACSGSP-- 303 (445)
T ss_pred ccc-ccCCCceeeEEEcCCC-CEEEEecccceeeeehhcccce---ecceec-cCCceeeeeecCCCCEEEEEEcCCc--
Confidence 222 2345678899999999 7888889999999996544331 222222 3458999999998866667666544
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC----CCeeeEEEeCCCCcEEEEEcCCC
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ----KDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~----~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
++|.+....+...... ...........+++ ......|+ ..+.+++|.|.|.+|.++--...
T Consensus 304 ~lysl~f~~~~~~~~~--~~~~k~~lliaDL~--e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVFLR--PQSIKRVLLIADLQ--EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred eEEEEeecCCCccccC--cccceeeeeeccch--hhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 4556554432211000 00000000000111 11112231 35889999999987766654443
No 211
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.59 E-value=1.5e-13 Score=122.23 Aligned_cols=233 Identities=18% Similarity=0.255 Sum_probs=166.2
Q ss_pred CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCCC---CCeEEEEeCCCeEEEEecCC
Q 039302 190 DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPVA---PGRLVSGDCNSCIHLWEPAS 265 (479)
Q Consensus 190 ~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~---~~~l~sg~~dg~I~lwd~~~ 265 (479)
..|.+.+|++.... ..++-+++ .-...++.|.|..-. .-.|+-+...|.|.++....
T Consensus 44 R~Gkl~Lys~~d~~-------------------~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~ 104 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMK-------------------LSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDE 104 (339)
T ss_pred eccceEEEeecccc-------------------cCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeecc
Confidence 34788999987632 11222221 123467888887432 22567778899999998754
Q ss_pred CCccccCCCCcccCCC---cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-ceeeEEecCCCCEEEEEEcCCCCcEEE
Q 039302 266 DATWNVDPNPFIGHAA---SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK-SALMSFKAHNADVNVISWNRLASCLLA 341 (479)
Q Consensus 266 ~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~-~~~~~~~~h~~~v~~l~~~p~~~~~l~ 341 (479)
... ......+....- ...++.|++.+. .++++-.+|.+.+-+..... ..++..+.|.-.+....|+...++++.
T Consensus 105 ~~s-s~~L~~ls~~ki~~~~~lslD~~~~~~-~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvy 182 (339)
T KOG0280|consen 105 DES-SVHLRGLSSKKISVVEALSLDISTSGT-KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVY 182 (339)
T ss_pred cee-eeeecccchhhhhheeeeEEEeeccCc-eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEE
Confidence 322 111122222222 245778998888 78888889999965554442 234567899999999999998889999
Q ss_pred EEeCCCeEEEEeCCCCCCCCceEEE-eecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccc
Q 039302 342 SGSDDGTFSIHDLRLLKGGDSVVAH-FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQ 420 (479)
Q Consensus 342 sgs~dg~i~iwDlr~~~~~~~~~~~-~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~ 420 (479)
+||+|+.+..||+|..+. .+.. .+.|...|.+|.-+|..+.+|++|+.|..|++||.++...+
T Consensus 183 tGgDD~~l~~~D~R~p~~---~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP------------- 246 (339)
T KOG0280|consen 183 TGGDDGSLSCWDIRIPKT---FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP------------- 246 (339)
T ss_pred ecCCCceEEEEEecCCcc---eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc-------------
Confidence 999999999999995442 4443 66799999999999988899999999999999999977532
Q ss_pred cCCCCCCCCceEEeecCCCCeeeEEEeCCCC-cEEEEEcCCCceEEeeecc
Q 039302 421 VNAPEDLPPQLLFIHQGQKDLKELHWHTQVP-GMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 421 ~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~-~ll~s~~~dgi~iw~~~~~ 470 (479)
+|.-.-...|+.+.|||... .+++++-.+|++|.+..+-
T Consensus 247 -----------l~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 247 -----------LFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred -----------cccCccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 33333235799999999753 4678888888888887654
No 212
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.58 E-value=1.7e-13 Score=130.92 Aligned_cols=171 Identities=15% Similarity=0.279 Sum_probs=128.6
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-------------
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------------- 314 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------------- 314 (479)
-|+.|-.-|.|++.|........+......-.+..|+|+.|-|.+.+.|+++-.+|.+.+||..-..
T Consensus 187 dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~ 266 (636)
T KOG2394|consen 187 DLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDG 266 (636)
T ss_pred ceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCC
Confidence 6888888999999988652221100011111247899999999999899999999999999763210
Q ss_pred --------------ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 315 --------------SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 315 --------------~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
.++..+......|+..+|+|++ .+||+.+.||.++|||..+.. ++..++.--+...||+|+
T Consensus 267 ~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG-~~LA~VSqDGfLRvF~fdt~e----Llg~mkSYFGGLLCvcWS 341 (636)
T KOG2394|consen 267 DQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDG-KYLATVSQDGFLRIFDFDTQE----LLGVMKSYFGGLLCVCWS 341 (636)
T ss_pred CeeEEeeeeccccCCccceeEeccccccceeEcCCC-ceEEEEecCceEEEeeccHHH----HHHHHHhhccceEEEEEc
Confidence 1222333345578999999988 999999999999999999877 666777677889999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHT 448 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p 448 (479)
|++ .+|++|++|..|.||.+...+ -+...|.+.+.|+.|+|.|
T Consensus 342 PDG-KyIvtGGEDDLVtVwSf~erR------------------------VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 342 PDG-KYIVTGGEDDLVTVWSFEERR------------------------VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CCc-cEEEecCCcceEEEEEeccce------------------------EEEeccccccceeeEeecc
Confidence 965 999999999999999997663 2333444434688898884
No 213
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=1.7e-13 Score=126.22 Aligned_cols=210 Identities=16% Similarity=0.225 Sum_probs=161.3
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.+.|-.++... ..|.+|-.+|.+.+|....... ...++..+..+ ..+..|.-++..+++
T Consensus 105 ~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d~-----------------hss~l~~la~g-~g~~~~r~~~~~p~I 163 (412)
T KOG3881|consen 105 TKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGDL-----------------HSSKLIKLATG-PGLYDVRQTDTDPYI 163 (412)
T ss_pred cccccchhhcC---CEEEEEecCCcEEEEeccCCcc-----------------ccccceeeecC-CceeeeccCCCCCce
Confidence 34454444432 3566778999999999885211 12344445444 467888888888878
Q ss_pred EEEEeCC--CeEEEEecCCCCccccCC---CCcccCC--CcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 249 LVSGDCN--SCIHLWEPASDATWNVDP---NPFIGHA--ASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 249 l~sg~~d--g~I~lwd~~~~~~~~~~~---~~~~~h~--~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
+++|+.. ..+.|||+.......... ....+-. -.++++.|-+.. .+.||+|+.-+.+++||++.++.|+..+
T Consensus 164 va~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f 243 (412)
T KOG3881|consen 164 VATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF 243 (412)
T ss_pred EecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEe
Confidence 8889988 899999998753211000 0011111 235788897761 3389999999999999999998899999
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.-...+|+++...|.+ ++|++|..-|.+..||+|.+.. +...+.+..+.|++|..+|.. .+||++|.|..|+|+|
T Consensus 244 d~~E~~is~~~l~p~g-n~Iy~gn~~g~l~~FD~r~~kl---~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD 318 (412)
T KOG3881|consen 244 DFLENPISSTGLTPSG-NFIYTGNTKGQLAKFDLRGGKL---LGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHD 318 (412)
T ss_pred ccccCcceeeeecCCC-cEEEEecccchhheecccCcee---eccccCCccCCcceEEEcCCC-ceEEeeccceeEEEee
Confidence 8889999999999999 9999999999999999999884 444589999999999999955 8999999999999999
Q ss_pred CCCC
Q 039302 401 LSLE 404 (479)
Q Consensus 401 l~~~ 404 (479)
+.+.
T Consensus 319 ~ktr 322 (412)
T KOG3881|consen 319 IKTR 322 (412)
T ss_pred cccc
Confidence 9884
No 214
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.58 E-value=9.2e-13 Score=136.83 Aligned_cols=313 Identities=14% Similarity=0.124 Sum_probs=192.3
Q ss_pred CceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCc
Q 039302 91 PYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQG 170 (479)
Q Consensus 91 ~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~ 170 (479)
|++-+|+.| +.++.|.||+...+.+. + ..-..+.....-.+
T Consensus 1059 ~~~s~Fvsg-----S~DGtVKvW~~~k~~~~--------------------------------~--~s~rS~ltys~~~s 1099 (1431)
T KOG1240|consen 1059 EHTSLFVSG-----SDDGTVKVWNLRKLEGE--------------------------------G--GSARSELTYSPEGS 1099 (1431)
T ss_pred CCCceEEEe-----cCCceEEEeeehhhhcC--------------------------------c--ceeeeeEEEeccCC
Confidence 566778876 58899999988533210 0 01222234444567
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC--CCceEEEEeCCCCCC-
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH--KDEGYAIDWNPVAPG- 247 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~~~~~- 247 (479)
.+.++..++.+ ..+|.++.||.|++.+++....... ..........+ ..-|..-++......
T Consensus 1100 r~~~vt~~~~~-~~~Av~t~DG~v~~~~id~~~~~~~--------------~~~~~ri~n~~~~g~vv~m~a~~~~~~S~ 1164 (1431)
T KOG1240|consen 1100 RVEKVTMCGNG-DQFAVSTKDGSVRVLRIDHYNVSKR--------------VATQVRIPNLKKDGVVVSMHAFTAIVQSH 1164 (1431)
T ss_pred ceEEEEeccCC-CeEEEEcCCCeEEEEEccccccccc--------------eeeeeecccccCCCceEEeecccccccce
Confidence 89999999988 6777789999999999987311110 01111111111 123333344433333
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE-ecCCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF-KAHNAD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-~~h~~~ 326 (479)
.|+.+...+.|..||++....... ....-..+.|++++.+|.+. .+++|+..|.+.+||+|-+. ++.+. ..+..+
T Consensus 1165 ~lvy~T~~~~iv~~D~r~~~~~w~--lk~~~~hG~vTSi~idp~~~-WlviGts~G~l~lWDLRF~~-~i~sw~~P~~~~ 1240 (1431)
T KOG1240|consen 1165 VLVYATDLSRIVSWDTRMRHDAWR--LKNQLRHGLVTSIVIDPWCN-WLVIGTSRGQLVLWDLRFRV-PILSWEHPARAP 1240 (1431)
T ss_pred eEEEEEeccceEEecchhhhhHHh--hhcCccccceeEEEecCCce-EEEEecCCceEEEEEeecCc-eeecccCcccCC
Confidence 788888899999999987543221 22333457899999999998 99999999999999999874 55544 455678
Q ss_pred EEEEEEcCCCC--cEEEEEe--CCCeEEEEeCCCCCCCCceEEEeecC-------------------CCCeEEEEEeCCC
Q 039302 327 VNVISWNRLAS--CLLASGS--DDGTFSIHDLRLLKGGDSVVAHFEYH-------------------KHPVTSIEWSPHE 383 (479)
Q Consensus 327 v~~l~~~p~~~--~~l~sgs--~dg~i~iwDlr~~~~~~~~~~~~~~h-------------------~~~I~~v~~sp~~ 383 (479)
++.+..+|..+ ...++++ ..+.|.+|++.++.. ...+... .-......+.. .
T Consensus 1241 i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~----~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~ 1315 (1431)
T KOG1240|consen 1241 IRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR----QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-K 1315 (1431)
T ss_pred cceEEeeccCCCCceEEEecccCCCceeeeecccCcc----eEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-C
Confidence 88888877654 4454444 467899999998863 2222221 11111222322 3
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChH-H-----------HHHHhhhccc-------------ccCCCCCC-CCc------e
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEE-E-----------EAEFKAKTRE-------------QVNAPEDL-PPQ------L 431 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~-~-----------~~~~~~~~~~-------------~~~~~~~~-p~~------l 431 (479)
..++.+|+.|..|+.||........ . ...+..++.. .......+ +.+ .
T Consensus 1316 ~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1316 NGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred CceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence 4789999999999999998765331 0 0000000000 00000000 000 0
Q ss_pred EEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 432 LFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 432 ~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
...-.+|..|+++++......+|++++.+| |+||+
T Consensus 1396 ~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred CCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 111123467999999887777999999999 99996
No 215
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.58 E-value=3e-15 Score=149.14 Aligned_cols=232 Identities=22% Similarity=0.298 Sum_probs=152.7
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 224 SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
+.+..+.+|...|+|+.|...+. ++++|+.|..++||.+.+... .....||.+.+++++.+.++. +++++|.|.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~----lAs~rGhs~ditdlavs~~n~-~iaaaS~D~ 254 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARC----LASCRGHSGDITDLAVSSNNT-MIAAASNDK 254 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhh----hccCCCCccccchhccchhhh-hhhhcccCc
Confidence 44556779999999999999998 999999999999999877544 366889999999999998777 899999999
Q ss_pred cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--CCceEEEeecCCCCeEEEEEeC
Q 039302 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--GDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--~~~~~~~~~~h~~~I~~v~~sp 381 (479)
.|++|-++.+. ++..+.+|.+.|++|+|+|.. +.+.||++++||.|-... ...+.. +. -..-+-++.|..
T Consensus 255 vIrvWrl~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~-~~-~~~~~~s~~~~~ 326 (1113)
T KOG0644|consen 255 VIRVWRLPDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLK-FT-EKDLVDSILFEN 326 (1113)
T ss_pred eEEEEecCCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCC-cc-cccceeeeeccc
Confidence 99999999985 888889999999999999944 778999999999982110 000000 11 112233333433
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhh-h--ccc-ccCCCCCC--------CCceEEeecCCC-CeeeEEEeC
Q 039302 382 HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKA-K--TRE-QVNAPEDL--------PPQLLFIHQGQK-DLKELHWHT 448 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~-~--~~~-~~~~~~~~--------p~~l~~~h~g~~-~V~~v~w~p 448 (479)
++ ..++|++.|+.-..|.+.........-.|.. . ... ........ ..++.-..+||. .+..+.+||
T Consensus 327 ~~-~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hp 405 (1113)
T KOG0644|consen 327 NG-DRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHP 405 (1113)
T ss_pred cc-cccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecC
Confidence 22 4444444444444443332210000000000 0 000 00000000 001222223344 588999999
Q ss_pred CCCcEEEEEcCCC-ceEEeeecc
Q 039302 449 QVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 449 ~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
-.+.+..+++.|| ..||+.+..
T Consensus 406 fn~ri~msag~dgst~iwdi~eg 428 (1113)
T KOG0644|consen 406 FNPRIAMSAGYDGSTIIWDIWEG 428 (1113)
T ss_pred CCcHhhhhccCCCceEeeecccC
Confidence 9999999999999 899998754
No 216
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.58 E-value=4e-13 Score=123.90 Aligned_cols=251 Identities=14% Similarity=0.167 Sum_probs=179.5
Q ss_pred CcceeEEEEecCCC-cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQNP-HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
...|..+.|.-++. .++..++.+-.+..+.+....-.. ....+.+.......|..++... +
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s---------------~~~~~~~~~l~~~~I~gl~~~d---g 116 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISS---------------SLDDAKTVSLGTKSIKGLKLAD---G 116 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCcccc---------------ccccccccccccccccchhhcC---C
Confidence 34566677776553 345454567777777776632111 0112223444556677666543 4
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC--CcEEEEEcCCCCceeeEEecC--
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD--GNIAIWDTRVGKSALMSFKAH-- 323 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d--g~I~iwD~~~~~~~~~~~~~h-- 323 (479)
.|++|..+|.+.+|....+.........+.. ...+..+.-++..++++|+|+.. ..+.|||+.+.+ .+.+-+.-
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~-g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aKNvpn 194 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLAT-GPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAKNVPN 194 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeec-CCceeeeccCCCCCceEecCchhcccceeeeecccce-eeeeccCCCC
Confidence 8999999999999998754321111122222 35677888888888889999998 899999999873 33222111
Q ss_pred -------CCCEEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 324 -------NADVNVISWNRL--ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 324 -------~~~v~~l~~~p~--~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
.-.++.+.|-+. . +.||+++.-+.+++||.+.++. |+..|..-..+|+++...|. ++++++|..-+
T Consensus 195 D~L~LrVPvW~tdi~Fl~g~~~-~~fat~T~~hqvR~YDt~~qRR---PV~~fd~~E~~is~~~l~p~-gn~Iy~gn~~g 269 (412)
T KOG3881|consen 195 DRLGLRVPVWITDIRFLEGSPN-YKFATITRYHQVRLYDTRHQRR---PVAQFDFLENPISSTGLTPS-GNFIYTGNTKG 269 (412)
T ss_pred ccccceeeeeeccceecCCCCC-ceEEEEecceeEEEecCcccCc---ceeEeccccCcceeeeecCC-CcEEEEecccc
Confidence 124677888776 4 7899999999999999998876 99999999999999999995 49999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.+..+|++...- +.....|.. .|++++-||+.+ +++|||-|. |+|++..+
T Consensus 270 ~l~~FD~r~~kl------------------------~g~~~kg~tGsirsih~hp~~~-~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 270 QLAKFDLRGGKL------------------------LGCGLKGITGSIRSIHCHPTHP-VLASCGLDRYVRIHDIKT 321 (412)
T ss_pred hhheecccCcee------------------------eccccCCccCCcceEEEcCCCc-eEEeeccceeEEEeeccc
Confidence 999999998741 111123333 699999999997 999999998 89988765
No 217
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=1.3e-14 Score=138.68 Aligned_cols=186 Identities=22% Similarity=0.323 Sum_probs=145.1
Q ss_pred CCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE-ecCCCCEEEEEEcCCC-CcEEEEEeCCCeEEE
Q 039302 274 NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF-KAHNADVNVISWNRLA-SCLLASGSDDGTFSI 351 (479)
Q Consensus 274 ~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-~~h~~~v~~l~~~p~~-~~~l~sgs~dg~i~i 351 (479)
..+.||++.|+++.|+.+|. +|++||.|-.+.|||.-..+ ++..+ .+|...|.++.|-|.. ..++++|+.|..|++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~K-llhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l 121 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYK-LLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL 121 (758)
T ss_pred hhhccccceecceeecCCCC-EEeecCCcceEEeecchhcc-eeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence 45889999999999999999 99999999999999998665 45554 7899999999998854 358899999999999
Q ss_pred EeCCCCCCC------CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCC
Q 039302 352 HDLRLLKGG------DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPE 425 (479)
Q Consensus 352 wDlr~~~~~------~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~ 425 (479)
||+...+.. ..+...+..|...|-.|+-.|.++..|.++++||+|+-+|++..... .-..
T Consensus 122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c--------------~p~~ 187 (758)
T KOG1310|consen 122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC--------------NPDE 187 (758)
T ss_pred EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC--------------Cccc
Confidence 999864321 13556677799999999999988899999999999999999875310 0011
Q ss_pred CCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccCCCCC
Q 039302 426 DLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQSTLP 475 (479)
Q Consensus 426 ~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~~~~~ 475 (479)
..+..+...+..-...+++..+|+.+.+|+.|+.+- .++|+...+.++.+
T Consensus 188 ~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~ 238 (758)
T KOG1310|consen 188 DCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFR 238 (758)
T ss_pred cccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCC
Confidence 223333333332246889999999999999999887 78888655544433
No 218
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.57 E-value=2.5e-13 Score=122.45 Aligned_cols=249 Identities=17% Similarity=0.268 Sum_probs=159.4
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
+|....+...-..++..++|+|+|++++.+...+-.|.||.+.+. ....+..-...+.
T Consensus 80 Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~----------------------~~~~~~~pK~~~k 137 (447)
T KOG4497|consen 80 QPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ----------------------KGYLLPHPKTNVK 137 (447)
T ss_pred cceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccc----------------------eeEEecccccCce
Confidence 344444455556789999999999999999999999999999872 1222333334668
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
.++|+|+++ +.+.++.-...-..++..-+.|.. ...+.-.+-..+.|.|+|+|. .+| +||.--.- .+
T Consensus 138 g~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~l-l~~f~~dT~DltgieWsPdg~-~la---------Vwd~~Ley-kv 204 (447)
T KOG4497|consen 138 GYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWIL-LKEFKLDTIDLTGIEWSPDGN-WLA---------VWDNVLEY-KV 204 (447)
T ss_pred eEEECCCCc-eeeeeecccHHHHHHHHhhHHHHH-HHhcCCCcccccCceECCCCc-EEE---------Eecchhhh-ee
Confidence 899999997 666665432222222222122222 233444556678899999987 554 56643221 12
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-------------------------------------
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG------------------------------------- 360 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~------------------------------------- 360 (479)
..+. ..-++..++|+|.+ .+|+.|+.|+.++|.+--+.+.-
T Consensus 205 ~aYe-~~lG~k~v~wsP~~-qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~ 282 (447)
T KOG4497|consen 205 YAYE-RGLGLKFVEWSPCN-QFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT 282 (447)
T ss_pred eeee-eccceeEEEecccc-ceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC
Confidence 2222 23568899999988 89999999998887643221110
Q ss_pred -------------------CceEEEee------cCCCCeEEEEEeCCCCCEEEEEeC--CCcEEEEECCCCCChHHHHHH
Q 039302 361 -------------------DSVVAHFE------YHKHPVTSIEWSPHEGSTLAVSSA--DNQLTIWDLSLEKDEEEEAEF 413 (479)
Q Consensus 361 -------------------~~~~~~~~------~h~~~I~~v~~sp~~~~~las~s~--Dg~I~iwdl~~~~~~~~~~~~ 413 (479)
...+..++ .....+.-++|+++. .++||-.. -+.+-+||++..+--
T Consensus 283 ~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds-~y~aTrnd~~PnalW~Wdlq~l~l~------ 355 (447)
T KOG4497|consen 283 DLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDS-TYAATRNDKYPNALWLWDLQNLKLH------ 355 (447)
T ss_pred ccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCc-eEEeeecCCCCceEEEEechhhhhh------
Confidence 00011111 123346678999954 77777543 357999999876311
Q ss_pred hhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 414 KAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 414 ~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
.-++. ..+|..+.|+|..+.+++.++...+.+|.+.-
T Consensus 356 ---------------avLiQ----k~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 356 ---------------AVLIQ----KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred ---------------hhhhh----ccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 11112 23699999999999999998888899997753
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=1.5e-11 Score=110.77 Aligned_cols=170 Identities=21% Similarity=0.221 Sum_probs=123.3
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEE-EeC
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFAS-CSV 301 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s-~s~ 301 (479)
..++.++. ...+|.++.+.++ +|++.- .+.|.||...+.-....... .......+.+++-+- +..+||. |-.
T Consensus 85 ~~~i~el~-f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~e-t~~NPkGlC~~~~~~-~k~~LafPg~k 157 (346)
T KOG2111|consen 85 ERCIIELS-FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIE-TRSNPKGLCSLCPTS-NKSLLAFPGFK 157 (346)
T ss_pred CcEEEEEE-eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeee-cccCCCceEeecCCC-CceEEEcCCCc
Confidence 56666664 4679999999874 566655 67999999875322111011 111122233333222 2224443 345
Q ss_pred CCcEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCCCCCCceEEEeec--CCCCeEEE
Q 039302 302 DGNIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLASCLLASGSDDGT-FSIHDLRLLKGGDSVVAHFEY--HKHPVTSI 377 (479)
Q Consensus 302 dg~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~-i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v 377 (479)
-|.|+|-|+...+. +...+.+|.+.|.|++.+.+| .++||+|..|+ |+|||.+++. ++..++- ....|.+|
T Consensus 158 ~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G-t~vATaStkGTLIRIFdt~~g~----~l~E~RRG~d~A~iy~i 232 (346)
T KOG2111|consen 158 TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG-TLVATASTKGTLIRIFDTEDGT----LLQELRRGVDRADIYCI 232 (346)
T ss_pred cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-cEEEEeccCcEEEEEEEcCCCc----EeeeeecCCchheEEEE
Confidence 69999999987753 346789999999999999999 99999999996 7999999998 7777764 45679999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+|||+. .+||++|.-|+|+|+.++...
T Consensus 233 aFSp~~-s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 233 AFSPNS-SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EeCCCc-cEEEEEcCCCeEEEEEeecCC
Confidence 999955 999999999999999998643
No 220
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=5.3e-14 Score=132.85 Aligned_cols=259 Identities=15% Similarity=0.218 Sum_probs=184.9
Q ss_pred EecCCcceeEEEEecCC-CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 165 KVAHQGCVNRIRAMSQN-PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.-+|...|....|.|+. ..-+++++.||.|++=.+.... .......+..|.++|..++.-|
T Consensus 181 ~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~------------------~~e~t~rl~~h~g~vhklav~p 242 (559)
T KOG1334|consen 181 ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG------------------YVENTKRLAPHEGPVHKLAVEP 242 (559)
T ss_pred ccccccchhhhhccCCCCCcCceeccccCceeeeeecccc------------------ceecceecccccCccceeeecC
Confidence 34789999999999965 4567888999999987775521 1222455677999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCC---cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-----
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA---SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS----- 315 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~---~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~----- 315 (479)
..+..|.|++.|+.+.-+|++......... .-..+.. ...+|+.+|...+.|++++.|-.+++||.|.-..
T Consensus 243 ~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~ 321 (559)
T KOG1334|consen 243 DSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNG 321 (559)
T ss_pred CCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccc
Confidence 999899999999999999997754322111 1122233 5788999999999999999999999999986532
Q ss_pred eeeEEe------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC--------CceEEE-eecCCCC--eEEEE
Q 039302 316 ALMSFK------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG--------DSVVAH-FEYHKHP--VTSIE 378 (479)
Q Consensus 316 ~~~~~~------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~--------~~~~~~-~~~h~~~--I~~v~ 378 (479)
.+..+. .....|++++|+.+++.+ ++...|-.|+++.-..+... ...+.. +++|... |-.+-
T Consensus 322 ~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl-LaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVN 400 (559)
T KOG1334|consen 322 VLDKFCPHHLVEDDPVNITGLVYSHDGSEL-LASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVN 400 (559)
T ss_pred hhhhcCCccccccCcccceeEEecCCccce-eeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceee
Confidence 122221 234569999999888444 44556778899843322210 012333 7888754 55565
Q ss_pred E-eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEE
Q 039302 379 W-SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 379 ~-sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s 456 (479)
| -|. ..++++||.-|.|.||+-...+ ++..-.|. .-|+||.=||..| +|||
T Consensus 401 FfGPr-sEyVvSGSDCGhIFiW~K~t~e-------------------------ii~~MegDr~VVNCLEpHP~~P-vLAs 453 (559)
T KOG1334|consen 401 FFGPR-SEYVVSGSDCGHIFIWDKKTGE-------------------------IIRFMEGDRHVVNCLEPHPHLP-VLAS 453 (559)
T ss_pred eccCc-cceEEecCccceEEEEecchhH-------------------------HHHHhhcccceEeccCCCCCCc-hhhc
Confidence 4 564 4899999999999999987763 22222221 2699999999999 8888
Q ss_pred EcCCC-ceEEeeecc
Q 039302 457 TAADG-FNILMPSNI 470 (479)
Q Consensus 457 ~~~dg-i~iw~~~~~ 470 (479)
+|-+. |+||.+..-
T Consensus 454 SGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 454 SGIDHDVKIWTPLTA 468 (559)
T ss_pred cCCccceeeecCCcc
Confidence 88888 999998443
No 221
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.55 E-value=6.3e-12 Score=115.31 Aligned_cols=188 Identities=17% Similarity=0.212 Sum_probs=140.5
Q ss_pred cEEEEEeCC--ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEE
Q 039302 183 HICASWADT--GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHL 260 (479)
Q Consensus 183 ~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~l 260 (479)
.|+|..+.+ ..++++++.. ...+..+. ...+|.++.++.+ +|+++-.+ .|+|
T Consensus 57 SLvaiV~~~qpr~Lkv~~~Kk---------------------~~~ICe~~-fpt~IL~VrmNr~---RLvV~Lee-~IyI 110 (391)
T KOG2110|consen 57 SLVAIVSIKQPRKLKVVHFKK---------------------KTTICEIF-FPTSILAVRMNRK---RLVVCLEE-SIYI 110 (391)
T ss_pred ceeEEEecCCCceEEEEEccc---------------------CceEEEEe-cCCceEEEEEccc---eEEEEEcc-cEEE
Confidence 344444433 3488888876 33333332 3458999999764 77777755 5999
Q ss_pred EecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE--eCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCc
Q 039302 261 WEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC--SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASC 338 (479)
Q Consensus 261 wd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~--s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~ 338 (479)
||+++...... ......+...+.++.+++.+. ++|-= ...|.|.|||+.+.+ ++..+.+|.+.+.+++|+++| .
T Consensus 111 ydI~~MklLhT-I~t~~~n~~gl~AlS~n~~n~-ylAyp~s~t~GdV~l~d~~nl~-~v~~I~aH~~~lAalafs~~G-~ 186 (391)
T KOG2110|consen 111 YDIKDMKLLHT-IETTPPNPKGLCALSPNNANC-YLAYPGSTTSGDVVLFDTINLQ-PVNTINAHKGPLAALAFSPDG-T 186 (391)
T ss_pred Eecccceeehh-hhccCCCccceEeeccCCCCc-eEEecCCCCCceEEEEEcccce-eeeEEEecCCceeEEEECCCC-C
Confidence 99988655332 122334556677777777666 55542 246899999999886 788899999999999999999 9
Q ss_pred EEEEEeCCCe-EEEEeCCCCCCCCceEEEeecCC--CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 339 LLASGSDDGT-FSIHDLRLLKGGDSVVAHFEYHK--HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 339 ~l~sgs~dg~-i~iwDlr~~~~~~~~~~~~~~h~--~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+|||+++.|+ |||+.+.+++ .+..|+--. ..|.+++|+|+. .+|++.|..++|+||.|....
T Consensus 187 llATASeKGTVIRVf~v~~G~----kl~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 187 LLATASEKGTVIRVFSVPEGQ----KLYEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEeccCceEEEEEEcCCcc----EeeeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecccc
Confidence 9999999996 7899999888 688886433 358899999965 899999999999999997653
No 222
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.54 E-value=2.6e-13 Score=123.06 Aligned_cols=286 Identities=20% Similarity=0.299 Sum_probs=205.3
Q ss_pred CCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCce
Q 039302 157 GTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEG 236 (479)
Q Consensus 157 ~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 236 (479)
.+|.+..+..||...|+....-|..+.+ .+.+.|.+|+||--..... .-|-. ......++
T Consensus 12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv-~~~s~drtvrv~lkrds~q------------------~wpsI-~~~mP~~~ 71 (404)
T KOG1409|consen 12 KKPELLSKIEGSQDDVNAAILIPKEEGV-ISVSEDRTVRVWLKRDSGQ------------------YWPSI-YHYMPSPC 71 (404)
T ss_pred cchhhhhhhcCchhhhhhheeccCCCCe-EEccccceeeeEEeccccc------------------cCchh-hhhCCCCc
Confidence 3778878889999999999999977545 4779999999996544111 11111 11124588
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC---
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG--- 313 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~--- 313 (479)
.++.+.+... +|+.|-..|++.-+.+...-......+.+..|...|..+-|+-... .+++++.|+.+.---.+.+
T Consensus 72 ~~~~y~~e~~-~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~l 149 (404)
T KOG1409|consen 72 SAMEYVSESR-RLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRL 149 (404)
T ss_pred eEeeeeccce-EEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcc
Confidence 9999999887 9999999999998877553332333466778889999888887666 6777766655432211110
Q ss_pred -------------------------------------CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 314 -------------------------------------KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 314 -------------------------------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
-.++..+.+|...+.+++|.+.. .+|.+|..|..+.+||+--
T Consensus 150 g~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~-~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 150 GGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ-RLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred cceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC-cEEEeccccCceEEEeccC
Confidence 12455678899999999999988 8999999999999999987
Q ss_pred CCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHH---------------HHHhh------
Q 039302 357 LKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEE---------------AEFKA------ 415 (479)
Q Consensus 357 ~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~---------------~~~~~------ 415 (479)
... ....+.+|...|..+..-+.- ..|.+++.||.|.+|+++....+..+ ..++.
T Consensus 229 ~~g---~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~ 304 (404)
T KOG1409|consen 229 RKG---TAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQ 304 (404)
T ss_pred Ccc---eeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhh
Confidence 765 677888999999999887755 89999999999999999876432111 00000
Q ss_pred -----hccc-------------------------------ccCCCCC-CCCceEEeecCCCCeeeEEEeCCCCcEEEEEc
Q 039302 416 -----KTRE-------------------------------QVNAPED-LPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 416 -----~~~~-------------------------------~~~~~~~-~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
+..+ ......+ -++.|...|..+..|+.+++.... ++|+++|
T Consensus 305 ~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqetl-glLvTsG 383 (404)
T KOG1409|consen 305 LGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQETL-GLLVTSG 383 (404)
T ss_pred hhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhhhc-cceeecC
Confidence 0000 0000112 233466778888899999998877 5888888
Q ss_pred CCC-ceEEeeecc
Q 039302 459 ADG-FNILMPSNI 470 (479)
Q Consensus 459 ~dg-i~iw~~~~~ 470 (479)
.|. |+||++.++
T Consensus 384 ~~Rvi~iwd~~~v 396 (404)
T KOG1409|consen 384 TDRVIKIWDVRSV 396 (404)
T ss_pred CceEEEEEechhh
Confidence 888 899999887
No 223
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.54 E-value=8e-13 Score=117.43 Aligned_cols=152 Identities=25% Similarity=0.445 Sum_probs=105.1
Q ss_pred EEEEeCCCCCCeEEEEeC---------CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE--eCCCcE
Q 039302 237 YAIDWNPVAPGRLVSGDC---------NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC--SVDGNI 305 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~---------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~--s~dg~I 305 (479)
-.|.|++.|..+++.... -|...||.++....... ...+ ...++|.+++|+|++. .||++ ..++.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~-~i~l-~~~~~I~~~~WsP~g~-~favi~g~~~~~v 85 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVE-SIEL-KKEGPIHDVAWSPNGN-EFAVIYGSMPAKV 85 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccc-eeec-cCCCceEEEEECcCCC-EEEEEEccCCccc
Confidence 368899999844444441 23456666644332111 1112 2345799999999998 55443 467899
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD---DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~---dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.|||++.. .+..+ +...++.|.|+|+| ++|++|+. .|.|.+||+++.+ .+..+. | ..++.++|+|+
T Consensus 86 ~lyd~~~~--~i~~~--~~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~----~i~~~~-~-~~~t~~~WsPd 154 (194)
T PF08662_consen 86 TLYDVKGK--KIFSF--GTQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKK----KISTFE-H-SDATDVEWSPD 154 (194)
T ss_pred EEEcCccc--EeEee--cCCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCE----Eeeccc-c-CcEEEEEEcCC
Confidence 99999732 44444 35678999999999 77777764 4679999999766 666654 3 35789999996
Q ss_pred CCCEEEEEeC------CCcEEEEECCC
Q 039302 383 EGSTLAVSSA------DNQLTIWDLSL 403 (479)
Q Consensus 383 ~~~~las~s~------Dg~I~iwdl~~ 403 (479)
+ ++|++++. |+.++||++..
T Consensus 155 G-r~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 155 G-RYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred C-CEEEEEEeccceeccccEEEEEecC
Confidence 6 77777654 88999999864
No 224
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=8.9e-12 Score=125.18 Aligned_cols=200 Identities=11% Similarity=0.050 Sum_probs=125.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEe--CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWA--DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+..+...+...+|+|+|..++.+.. .+..|++|++... ..+.+..+.+ .+.+++|+
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G-------------------~~~~l~~~~~---~~~~~~~S 251 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG-------------------AVRQVASFPR---HNGAPAFS 251 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC-------------------CeEEccCCCC---CcCCeEEC
Confidence 3456778999999999965554432 2357899998651 1122222333 34468999
Q ss_pred CCCCCeEEE-EeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-CCcEEEE--EcCCCCce
Q 039302 243 PVAPGRLVS-GDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-DGNIAIW--DTRVGKSA 316 (479)
Q Consensus 243 ~~~~~~l~s-g~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-dg~I~iw--D~~~~~~~ 316 (479)
|++. .|+. .+.+| .|++||+.++... .+..+...+....|+|+++ .|+.++. ++...|| |+.++.
T Consensus 252 PDG~-~La~~~~~~g~~~I~~~d~~tg~~~-----~lt~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g~-- 322 (429)
T PRK03629 252 PDGS-KLAFALSKTGSLNLYVMDLASGQIR-----QVTDGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGGA-- 322 (429)
T ss_pred CCCC-EEEEEEcCCCCcEEEEEECCCCCEE-----EccCCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCCC--
Confidence 9998 6664 34455 5889999765432 2333345678899999999 5555554 4555555 555543
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEe-CCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
...+..+........|+|++ .+|+..+ .++ .|.+||+.++. ...+.. .....+..|+|++ .+|+.++.+
T Consensus 323 ~~~lt~~~~~~~~~~~SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~-----~~~Lt~-~~~~~~p~~SpDG-~~i~~~s~~ 394 (429)
T PRK03629 323 PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG-----VQVLTD-TFLDETPSIAPNG-TMVIYSSSQ 394 (429)
T ss_pred eEEeecCCCCccCEEECCCC-CEEEEEEccCCCceEEEEECCCCC-----eEEeCC-CCCCCCceECCCC-CEEEEEEcC
Confidence 33333344456678999999 5555544 333 58889988765 223322 1234568899966 777777776
Q ss_pred Cc---EEEEECCC
Q 039302 394 NQ---LTIWDLSL 403 (479)
Q Consensus 394 g~---I~iwdl~~ 403 (479)
+. +.++++..
T Consensus 395 ~~~~~l~~~~~~G 407 (429)
T PRK03629 395 GMGSVLNLVSTDG 407 (429)
T ss_pred CCceEEEEEECCC
Confidence 64 66777743
No 225
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.1e-11 Score=113.29 Aligned_cols=217 Identities=18% Similarity=0.304 Sum_probs=142.6
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|+|++|-|.+..-||.|+..| |.||......+.......... ....+....+| .+|+.|.|++++. .
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~~~~s~-------~~~qvl~~pgh-~pVtsmqwn~dgt-~ 209 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNIRMMST-------HHLQVLQDPGH-NPVTSMQWNEDGT-I 209 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCcccccccccccccc-------cchhheeCCCC-ceeeEEEEcCCCC-E
Confidence 468999999999888888877754 999998764332211100000 11223444566 5899999999997 8
Q ss_pred EEEEeC-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 249 LVSGDC-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 249 l~sg~~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
|++++. |..|.|||+.++..... .. .-.+.+.-+.|||++. +|.+++.|+..++|.......+. ......+.|
T Consensus 210 l~tAS~gsssi~iWdpdtg~~~pL--~~--~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~wt~e-rw~lgsgrv 283 (445)
T KOG2139|consen 210 LVTASFGSSSIMIWDPDTGQKIPL--IP--KGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSWTKE-RWILGSGRV 283 (445)
T ss_pred EeecccCcceEEEEcCCCCCcccc--cc--cCCCceeeEEEcCCCC-EEEEecccceeeeehhcccceec-ceeccCCce
Confidence 888775 56899999998765332 11 2246788999999999 88888999999999655443222 223334589
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCC-----------ceEEEee------c---CCCCeEEEEEeCCCCCEE
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGD-----------SVVAHFE------Y---HKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~-----------~~~~~~~------~---h~~~I~~v~~sp~~~~~l 387 (479)
...+|+|.|..+|++.+..- ++|.+....... .++..+. + -.+++.+++|.|.+ .+|
T Consensus 284 qtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyL 360 (445)
T KOG2139|consen 284 QTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYL 360 (445)
T ss_pred eeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEE
Confidence 99999999977777776544 444443221100 0111111 1 24678899999966 788
Q ss_pred EEEeCCC--------cEEEEECCCC
Q 039302 388 AVSSADN--------QLTIWDLSLE 404 (479)
Q Consensus 388 as~s~Dg--------~I~iwdl~~~ 404 (479)
|+.-..+ .|.+||.+..
T Consensus 361 av~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 361 AVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred EEEEcCCchhhhhhhhhhhhccccc
Confidence 8765432 3566777654
No 226
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.53 E-value=4.3e-13 Score=121.66 Aligned_cols=230 Identities=17% Similarity=0.233 Sum_probs=154.5
Q ss_pred CCcceeEEEEecCCC-cEEEEEeCCceEEEEeCCCCccccccccccc--C------------CCCCccccCCCcEEe-cC
Q 039302 168 HQGCVNRIRAMSQNP-HICASWADTGHVQVWDFRSHLNALAESETVA--G------------HGAPQVLNQSPLVKF-GG 231 (479)
Q Consensus 168 H~~~V~~v~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~--~------------~~~~~~~~~~~~~~~-~~ 231 (479)
-...|+.++|.+++. ..+...+.|.+|++|.+.............. . ..........|...+ .+
T Consensus 83 ieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNa 162 (433)
T KOG1354|consen 83 IEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANA 162 (433)
T ss_pred hhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeecccc
Confidence 356799999999872 3334448899999999876433221100000 0 000000112233332 36
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc--cccC--CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT--WNVD--PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~--~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
|.--|.++.++.+.. .+++++ |-.|.+|++.-... ..+. ...+..-+.-|++..|+|...++|+-.+..|+|++
T Consensus 163 HtyhiNSIS~NsD~E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL 240 (433)
T KOG1354|consen 163 HTYHINSISVNSDKE-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL 240 (433)
T ss_pred ceeEeeeeeecCccc-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence 788899999999998 888877 88999999865332 1111 12233334568899999999999999999999999
Q ss_pred EEcCCCCceee---EE------------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC
Q 039302 308 WDTRVGKSALM---SF------------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH 372 (479)
Q Consensus 308 wD~~~~~~~~~---~~------------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~ 372 (479)
.|+|....|-. .+ ..--..|..+.|++.| +++++-.. -+|++||+..... ++.++..|..
T Consensus 241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRDy-ltvk~wD~nme~~---pv~t~~vh~~ 315 (433)
T KOG1354|consen 241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRDY-LTVKLWDLNMEAK---PVETYPVHEY 315 (433)
T ss_pred eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEecc-ceeEEEeccccCC---cceEEeehHh
Confidence 99996421110 01 1112357889999999 88887543 6999999966554 7888777642
Q ss_pred ------------Ce---EEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 373 ------------PV---TSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 373 ------------~I---~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.| ..++|+-++ .+++|||..+.++++++..+.
T Consensus 316 lr~kLc~lYEnD~IfdKFec~~sg~~-~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 316 LRSKLCSLYENDAIFDKFECSWSGND-SYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred HHHHHHHHhhccchhheeEEEEcCCc-ceEecccccceEEEecCCCCc
Confidence 22 357898755 899999999999999976653
No 227
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.52 E-value=7.5e-12 Score=121.84 Aligned_cols=246 Identities=9% Similarity=0.071 Sum_probs=147.8
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEE-eCCCeEEEEe
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSG-DCNSCIHLWE 262 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg-~~dg~I~lwd 262 (479)
+.++...++.|++|++.... ....+.++. +......++++|+++ +|+++ ..++.|.+|+
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g------------------~l~~~~~~~-~~~~~~~l~~spd~~-~lyv~~~~~~~i~~~~ 63 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEG------------------ALTLLQVVD-VPGQVQPMVISPDKR-HLYVGVRPEFRVLSYR 63 (330)
T ss_pred EEEEcCCCCCEEEEEECCCC------------------ceeeeeEEe-cCCCCccEEECCCCC-EEEEEECCCCcEEEEE
Confidence 44555778999999996410 123344443 334567899999998 76555 4588999999
Q ss_pred cCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeEEecCCCCEEEEEEcCCCCcE
Q 039302 263 PASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMSFKAHNADVNVISWNRLASCL 339 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~~h~~~v~~l~~~p~~~~~ 339 (479)
+...+..... ... ...+....++|+|+++.++++...++.|.+|++..... .+..+ .+......++++|++..+
T Consensus 64 ~~~~g~l~~~-~~~-~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l 140 (330)
T PRK11028 64 IADDGALTFA-AES-PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTL 140 (330)
T ss_pred ECCCCceEEe-eee-cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEE
Confidence 9743322111 111 12234678999999994444455689999999974321 12222 233456778999999556
Q ss_pred EEEEeCCCeEEEEeCCCCCCCC---ceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-CCcEEEEECCCCCChHHHHHHhh
Q 039302 340 LASGSDDGTFSIHDLRLLKGGD---SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA-DNQLTIWDLSLEKDEEEEAEFKA 415 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~~~~~~---~~~~~~~~h~~~I~~v~~sp~~~~~las~s~-Dg~I~iwdl~~~~~~~~~~~~~~ 415 (479)
+++...++.|.+||+....... ........ ......+.|+|++ .+|+++.. +++|.+|++.......+
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg-~~lyv~~~~~~~v~v~~~~~~~~~~~------ 212 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQ-QYAYCVNELNSSVDVWQLKDPHGEIE------ 212 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCC-CEEEEEecCCCEEEEEEEeCCCCCEE------
Confidence 6777778999999998643100 00111222 2345789999966 66666655 99999999974311000
Q ss_pred hcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 416 KTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 416 ~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
........|.. ..+.....+++++|++..++++...++ |.+|++.
T Consensus 213 ----~~~~~~~~p~~----~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~ 258 (330)
T PRK11028 213 ----CVQTLDMMPAD----FSDTRWAADIHITPDGRHLYACDRTASLISVFSVS 258 (330)
T ss_pred ----EEEEEecCCCc----CCCCccceeEEECCCCCEEEEecCCCCeEEEEEEe
Confidence 00000000000 001123457899999987777655444 8888874
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=4.6e-12 Score=127.36 Aligned_cols=200 Identities=16% Similarity=0.136 Sum_probs=126.5
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCC---CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCN---SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+..+...+.+.+|+|++. .|+..+.. ..|.+||+.++.... +....+.+....|+|+++.++++.+.+|
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~-~la~~s~~~~~~~I~~~dl~~g~~~~-----l~~~~g~~~~~~~SPDG~~la~~~~~~g 262 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGT-KLAYVSFESKKPVVYVHDLATGRRRV-----VANFKGSNSAPAWSPDGRTLAVALSRDG 262 (427)
T ss_pred eEeccCCCCcccceEcCCCC-EEEEEEccCCCcEEEEEECCCCCEEE-----eecCCCCccceEECCCCCEEEEEEccCC
Confidence 44556777899999999998 77766532 369999998764322 2222345568899999985555677888
Q ss_pred cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
...||.+.........+..+........|+|++..+++++..+|...||.+..... ....+..+........|+|++
T Consensus 263 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g---~~~~lt~~g~~~~~~~~SpDG 339 (427)
T PRK02889 263 NSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGG---AAQRVTFTGSYNTSPRISPDG 339 (427)
T ss_pred CceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCC---ceEEEecCCCCcCceEECCCC
Confidence 87777654322234445555555677899999944444444456667776543221 122222233345578999966
Q ss_pred CCEEEEEeCCC---cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 384 GSTLAVSSADN---QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 384 ~~~las~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
.+|+..+.++ .|.+||+..... ..+. .. .......|+|++..+++++..+
T Consensus 340 -~~Ia~~s~~~g~~~I~v~d~~~g~~-----------------------~~lt-~~--~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 340 -KLLAYISRVGGAFKLYVQDLATGQV-----------------------TALT-DT--TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -CEEEEEEccCCcEEEEEEECCCCCe-----------------------EEcc-CC--CCccCceECCCCCEEEEEEecC
Confidence 7776666544 699999976531 1111 11 2346789999998777777666
Q ss_pred Cc
Q 039302 461 GF 462 (479)
Q Consensus 461 gi 462 (479)
|.
T Consensus 393 g~ 394 (427)
T PRK02889 393 GR 394 (427)
T ss_pred CC
Confidence 63
No 229
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.1e-11 Score=125.19 Aligned_cols=195 Identities=11% Similarity=0.091 Sum_probs=130.7
Q ss_pred CcEEecCCCCceEEEEeCCCCCCeEEEEeC---CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC
Q 039302 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDC---NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 225 ~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~ 301 (479)
....+..|...+...+|+|++. .|+..+. +..|.+||+.++... .+..+.+.+....|+|+++.++++.+.
T Consensus 193 ~~~~lt~~~~~v~~p~wSpDG~-~lay~s~~~g~~~i~~~dl~~g~~~-----~l~~~~g~~~~~~~SPDG~~la~~~~~ 266 (435)
T PRK05137 193 NVRYLTDGSSLVLTPRFSPNRQ-EITYMSYANGRPRVYLLDLETGQRE-----LVGNFPGMTFAPRFSPDGRKVVMSLSQ 266 (435)
T ss_pred CcEEEecCCCCeEeeEECCCCC-EEEEEEecCCCCEEEEEECCCCcEE-----EeecCCCcccCcEECCCCCEEEEEEec
Confidence 3355667788999999999998 7777653 468999999775432 233455667788999999855567776
Q ss_pred CCc--EEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe-CCC--eEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 302 DGN--IAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 302 dg~--I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
++. |.+||+.++. ...+..+.......+|+|++ ..|+..+ .+| .|++||+.... ...+..+...+..
T Consensus 267 ~g~~~Iy~~d~~~~~--~~~Lt~~~~~~~~~~~spDG-~~i~f~s~~~g~~~Iy~~d~~g~~-----~~~lt~~~~~~~~ 338 (435)
T PRK05137 267 GGNTDIYTMDLRSGT--TTRLTDSPAIDTSPSYSPDG-SQIVFESDRSGSPQLYVMNADGSN-----PRRISFGGGRYST 338 (435)
T ss_pred CCCceEEEEECCCCc--eEEccCCCCccCceeEcCCC-CEEEEEECCCCCCeEEEEECCCCC-----eEEeecCCCcccC
Confidence 766 6677887764 34455566666789999999 5555554 344 68888876544 3334434556778
Q ss_pred EEEeCCCCCEEEEEeCC---CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 377 IEWSPHEGSTLAVSSAD---NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 377 v~~sp~~~~~las~s~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
..|+|++ ..|+..+.+ ..|.+||+..... .+ .... ..+....|+|++..+
T Consensus 339 ~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~~-----------------------~~-lt~~--~~~~~p~~spDG~~i 391 (435)
T PRK05137 339 PVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSGE-----------------------RI-LTSG--FLVEGPTWAPNGRVI 391 (435)
T ss_pred eEECCCC-CEEEEEEcCCCceEEEEEECCCCce-----------------------Ee-ccCC--CCCCCCeECCCCCEE
Confidence 8999976 666655443 3677888754321 11 1121 246788999999877
Q ss_pred EEEEcCC
Q 039302 454 IVSTAAD 460 (479)
Q Consensus 454 l~s~~~d 460 (479)
++++...
T Consensus 392 ~~~~~~~ 398 (435)
T PRK05137 392 MFFRQTP 398 (435)
T ss_pred EEEEccC
Confidence 6666543
No 230
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=5.4e-12 Score=127.50 Aligned_cols=256 Identities=13% Similarity=0.139 Sum_probs=169.3
Q ss_pred EEEecCCcceeEEEEecCCC--cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNP--HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~--~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
..+.+|...+..+.+.|... .++.+++.+|.|++||... ...+.++..+. ++.++.
T Consensus 51 ~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~---------------------~~Llkt~~~~~-~v~~~~ 108 (792)
T KOG1963|consen 51 TSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSD---------------------GELLKTFDNNL-PVHALV 108 (792)
T ss_pred hhcccccCccceeeecCCCccceEEEEEecCccEEEecCCC---------------------cEEEEEEecCC-ceeEEE
Confidence 36778999999999999876 5667899999999999987 44555554322 344444
Q ss_pred eCCCCCC--eEE-EEeCC------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcE
Q 039302 241 WNPVAPG--RLV-SGDCN------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 241 ~s~~~~~--~l~-sg~~d------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I 305 (479)
+.|.--. .++ .+..+ +.++-+.+.+..... ......|.. -.+|.+++.+. +.+. -.+..+
T Consensus 109 ~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~--~d~~~~~~~-~~~I~~~~~ge-~~~i-~~~~~~ 183 (792)
T KOG1963|consen 109 YKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAK--GDFLKEHQE-PKSIVDNNSGE-FKGI-VHMCKI 183 (792)
T ss_pred echhHhCccceeEeecccceeeeecccccccceeeeEeeeccccc--hhhhhhhcC-CccEEEcCCce-EEEE-EEeeeE
Confidence 3221100 111 11111 122222221110000 111222322 46778888886 4444 446679
Q ss_pred EEEEcCCCCceeeE---EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 306 AIWDTRVGKSALMS---FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 306 ~iwD~~~~~~~~~~---~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.+|........... -..|.-.+++.+++|.+ .++|+|..||.|.+|.--...........+..|...|++++|+++
T Consensus 184 ~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~ 262 (792)
T KOG1963|consen 184 HIYFVPKHTKHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSD 262 (792)
T ss_pred EEEEecccceeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecC
Confidence 99998874311111 13466678999999999 999999999999999644312212356778999999999999996
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCc
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGF 462 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi 462 (479)
+ .+|.+||..+.+.+|.+.+++. +.+-.- ...|..+.|+|++....+..+++.|
T Consensus 263 G-~~LlSGG~E~VLv~Wq~~T~~k-----------------------qfLPRL--gs~I~~i~vS~ds~~~sl~~~DNqI 316 (792)
T KOG1963|consen 263 G-AYLLSGGREGVLVLWQLETGKK-----------------------QFLPRL--GSPILHIVVSPDSDLYSLVLEDNQI 316 (792)
T ss_pred C-ceEeecccceEEEEEeecCCCc-----------------------cccccc--CCeeEEEEEcCCCCeEEEEecCceE
Confidence 5 9999999999999999998852 222222 2679999999999877777777779
Q ss_pred eEEeeeccCC
Q 039302 463 NILMPSNIQS 472 (479)
Q Consensus 463 ~iw~~~~~~~ 472 (479)
.+.+..++..
T Consensus 317 ~li~~~dl~~ 326 (792)
T KOG1963|consen 317 HLIKASDLEI 326 (792)
T ss_pred EEEeccchhh
Confidence 9999877743
No 231
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=9.3e-12 Score=125.49 Aligned_cols=201 Identities=11% Similarity=0.033 Sum_probs=125.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+..|...+...+|+|++..++.+... ...|++||+.. ++. ..+..+.+...+++|+
T Consensus 199 lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~S 256 (433)
T PRK04922 199 ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT---------------------GQR-ELVASFRGINGAPSFS 256 (433)
T ss_pred eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCC---------------------CCE-EEeccCCCCccCceEC
Confidence 44677889999999999555544322 34699999876 221 2222333445578999
Q ss_pred CCCCCeEEEEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCc--EEEEEcCCCCcee
Q 039302 243 PVAPGRLVSGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDGN--IAIWDTRVGKSAL 317 (479)
Q Consensus 243 ~~~~~~l~sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~--I~iwD~~~~~~~~ 317 (479)
|++...+++.+.+| .|++||+.++.. ..+..+.......+|+|+++ .|+.++ .+|. |.++|+.++. .
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~-----~~lt~~~~~~~~~~~spDG~-~l~f~sd~~g~~~iy~~dl~~g~--~ 328 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQL-----TRLTNHFGIDTEPTWAPDGK-SIYFTSDRGGRPQIYRVAASGGS--A 328 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCe-----EECccCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCC--e
Confidence 99983334555555 599999977543 22344445556789999998 555554 4555 5666666654 2
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCC-C--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-C
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDD-G--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA-D 393 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~-D 393 (479)
..+..+.......+|+|++ ..|+..+.+ + .|.+||+.++. .. .+. +........|+|++ .+|+..+. .
T Consensus 329 ~~lt~~g~~~~~~~~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~----~~-~Lt-~~~~~~~p~~spdG-~~i~~~s~~~ 400 (433)
T PRK04922 329 ERLTFQGNYNARASVSPDG-KKIAMVHGSGGQYRIAVMDLSTGS----VR-TLT-PGSLDESPSFAPNG-SMVLYATREG 400 (433)
T ss_pred EEeecCCCCccCEEECCCC-CEEEEEECCCCceeEEEEECCCCC----eE-ECC-CCCCCCCceECCCC-CEEEEEEecC
Confidence 2232233445578999999 566554433 3 69999997765 22 333 23345678999976 65555544 2
Q ss_pred --CcEEEEECCC
Q 039302 394 --NQLTIWDLSL 403 (479)
Q Consensus 394 --g~I~iwdl~~ 403 (479)
+.|.++++..
T Consensus 401 g~~~L~~~~~~g 412 (433)
T PRK04922 401 GRGVLAAVSTDG 412 (433)
T ss_pred CceEEEEEECCC
Confidence 3567777743
No 232
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.50 E-value=2.1e-12 Score=114.76 Aligned_cols=151 Identities=18% Similarity=0.397 Sum_probs=105.0
Q ss_pred EEEEECCCCCcEEEEEeC---------CCcEEEEEcCCCCceeeEEec-CCCCEEEEEEcCCCCcEEE-EEeCCCeEEEE
Q 039302 284 EDLQWSPTESDVFASCSV---------DGNIAIWDTRVGKSALMSFKA-HNADVNVISWNRLASCLLA-SGSDDGTFSIH 352 (479)
Q Consensus 284 ~~l~~sp~~~~~l~s~s~---------dg~I~iwD~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~-sgs~dg~i~iw 352 (479)
..+.|+|.|..+++.... -|...||-++....+...+.- ..++|..++|+|++..+++ +|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 467899999866665552 134666666554444444433 3456999999999944433 35567899999
Q ss_pred eCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCC
Q 039302 353 DLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD---NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPP 429 (479)
Q Consensus 353 Dlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 429 (479)
|++ .. ++..+. ...++.|.|+|++ ++|++++.+ |.|.+||++...
T Consensus 89 d~~-~~----~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~------------------------ 136 (194)
T PF08662_consen 89 DVK-GK----KIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKK------------------------ 136 (194)
T ss_pred cCc-cc----EeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCE------------------------
Confidence 997 33 566664 5788999999966 888887754 569999998652
Q ss_pred ceEEeecCCCCeeeEEEeCCCCcEEEEEc------CCCceEEeee
Q 039302 430 QLLFIHQGQKDLKELHWHTQVPGMIVSTA------ADGFNILMPS 468 (479)
Q Consensus 430 ~l~~~h~g~~~V~~v~w~p~~~~ll~s~~------~dgi~iw~~~ 468 (479)
.+.... +..++.++|+|+|.++++++. +.|++||+..
T Consensus 137 -~i~~~~-~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 137 -KISTFE-HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred -Eeeccc-cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec
Confidence 232222 346899999999997777765 3458888864
No 233
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.5e-11 Score=121.98 Aligned_cols=201 Identities=15% Similarity=0.108 Sum_probs=125.7
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEe---CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGD---CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG- 303 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~---~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg- 303 (479)
.+..+...+...+|+|++. .|+..+ .+..|.+|++.++.... ...+.++ +..+.|+|+++.++++.+.+|
T Consensus 193 ~lt~~~~~~~~p~wSPDG~-~la~~s~~~g~~~i~i~dl~~G~~~~--l~~~~~~---~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAVRQ--VASFPRH---NGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred EeecCCCceeeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCCeEE--ccCCCCC---cCCeEECCCCCEEEEEEcCCCC
Confidence 3445667899999999998 776543 24579999997754322 1223333 446899999994444555555
Q ss_pred -cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEE--eCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 304 -NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD-DGTFSIH--DLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 304 -~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~-dg~i~iw--Dlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
.|.+||+.++. ...+..+...+....|+|++ ..|+..+. ++...|| |+..+. ...+..+...+....|
T Consensus 267 ~~I~~~d~~tg~--~~~lt~~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~-----~~~lt~~~~~~~~~~~ 338 (429)
T PRK03629 267 LNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGA-----PQRITWEGSQNQDADV 338 (429)
T ss_pred cEEEEEECCCCC--EEEccCCCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCC-----eEEeecCCCCccCEEE
Confidence 48889998764 33444445567889999999 55555554 4544555 665443 3334444555678999
Q ss_pred eCCCCCEEEEEeC-C--CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE
Q 039302 380 SPHEGSTLAVSSA-D--NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 380 sp~~~~~las~s~-D--g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s 456 (479)
+|++ ..|+..+. + ..|.+||+..... ..+. .. .......|+|++..++++
T Consensus 339 SpDG-~~Ia~~~~~~g~~~I~~~dl~~g~~-----------------------~~Lt--~~-~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 339 SSDG-KFMVMVSSNGGQQHIAKQDLATGGV-----------------------QVLT--DT-FLDETPSIAPNGTMVIYS 391 (429)
T ss_pred CCCC-CEEEEEEccCCCceEEEEECCCCCe-----------------------EEeC--CC-CCCCCceECCCCCEEEEE
Confidence 9976 66655543 3 3578888876531 1111 11 123467899999877776
Q ss_pred EcCCCceEEeeec
Q 039302 457 TAADGFNILMPSN 469 (479)
Q Consensus 457 ~~~dgi~iw~~~~ 469 (479)
+.+.+..++.+.+
T Consensus 392 s~~~~~~~l~~~~ 404 (429)
T PRK03629 392 SSQGMGSVLNLVS 404 (429)
T ss_pred EcCCCceEEEEEE
Confidence 6655544444433
No 234
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=8.1e-12 Score=125.94 Aligned_cols=200 Identities=13% Similarity=0.099 Sum_probs=128.2
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeC---CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDC---NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+..+...+.+.+|+|++. .|+..+. ...|++|++.++.... +....+...+..|+|+++.++++.+.+|
T Consensus 197 ~~lt~~~~~v~~p~wSpDg~-~la~~s~~~~~~~l~~~dl~~g~~~~-----l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 197 QTILRSAEPILSPAWSPDGK-KLAYVSFERGRSAIYVQDLATGQREL-----VASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred eEeecCCCccccccCCCCCC-EEEEEecCCCCcEEEEEECCCCCEEE-----eccCCCCccCceECCCCCEEEEEEeCCC
Confidence 44556677899999999998 7777663 3479999997654322 2223334557899999985556666666
Q ss_pred --cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe-CCCe--EEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 304 --NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS-DDGT--FSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 304 --~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg~--i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
.|.+||+.++. +..+..+.......+|+|++ ..|+.++ .+|. |+++|+..+. ...+..+......++
T Consensus 271 ~~~Iy~~d~~~g~--~~~lt~~~~~~~~~~~spDG-~~l~f~sd~~g~~~iy~~dl~~g~-----~~~lt~~g~~~~~~~ 342 (433)
T PRK04922 271 NPEIYVMDLGSRQ--LTRLTNHFGIDTEPTWAPDG-KSIYFTSDRGGRPQIYRVAASGGS-----AERLTFQGNYNARAS 342 (433)
T ss_pred CceEEEEECCCCC--eEECccCCCCccceEECCCC-CEEEEEECCCCCceEEEEECCCCC-----eEEeecCCCCccCEE
Confidence 59999998764 34455555555778999999 5555544 4554 6666766544 222323344456789
Q ss_pred EeCCCCCEEEEEeCC-C--cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEE
Q 039302 379 WSPHEGSTLAVSSAD-N--QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIV 455 (479)
Q Consensus 379 ~sp~~~~~las~s~D-g--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~ 455 (479)
|+|++ ..|+..+.+ + .|.+||+..... . ...+. .......|+|++..+++
T Consensus 343 ~SpDG-~~Ia~~~~~~~~~~I~v~d~~~g~~-----------------------~-~Lt~~--~~~~~p~~spdG~~i~~ 395 (433)
T PRK04922 343 VSPDG-KKIAMVHGSGGQYRIAVMDLSTGSV-----------------------R-TLTPG--SLDESPSFAPNGSMVLY 395 (433)
T ss_pred ECCCC-CEEEEEECCCCceeEEEEECCCCCe-----------------------E-ECCCC--CCCCCceECCCCCEEEE
Confidence 99976 666655433 3 689999876531 1 11122 13456799999987766
Q ss_pred EEcCCC---ceEEee
Q 039302 456 STAADG---FNILMP 467 (479)
Q Consensus 456 s~~~dg---i~iw~~ 467 (479)
+...++ |.++.+
T Consensus 396 ~s~~~g~~~L~~~~~ 410 (433)
T PRK04922 396 ATREGGRGVLAAVST 410 (433)
T ss_pred EEecCCceEEEEEEC
Confidence 665544 444444
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=3.7e-11 Score=121.28 Aligned_cols=203 Identities=13% Similarity=0.074 Sum_probs=130.6
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEe--CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWA--DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
.+..|.+.+...+|+|++..++.+.. .+..|++||+.. +.. ..+..+.+.+.+.+|
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~ 253 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET---------------------GQR-ELVGNFPGMTFAPRF 253 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC---------------------CcE-EEeecCCCcccCcEE
Confidence 35578889999999999965554432 246899999976 222 234445567778999
Q ss_pred CCCCCCeEEEEeCCCe--EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCC--cEEEEEcCCCCce
Q 039302 242 NPVAPGRLVSGDCNSC--IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDG--NIAIWDTRVGKSA 316 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg--~I~iwD~~~~~~~ 316 (479)
+|++..++++.+.++. |++||+.++.. ..+..+.......+|+|+++ .++..+ .+| .|.++|+..+.
T Consensus 254 SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-----~~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~~-- 325 (435)
T PRK05137 254 SPDGRKVVMSLSQGGNTDIYTMDLRSGTT-----TRLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGSN-- 325 (435)
T ss_pred CCCCCEEEEEEecCCCceEEEEECCCCce-----EEccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCCC--
Confidence 9999833446666665 77778866543 22444555667889999998 555554 344 57788877653
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA- 392 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~- 392 (479)
...+..+...+....|+|++ ..|+..+.+ ..|.+||+.... ...+. ....+..+.|+|++ +.|+..+.
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG-~~ia~~~~~~~~~~i~~~d~~~~~-----~~~lt-~~~~~~~p~~spDG-~~i~~~~~~ 397 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRG-DLIAFTKQGGGQFSIGVMKPDGSG-----ERILT-SGFLVEGPTWAPNG-RVIMFFRQT 397 (435)
T ss_pred eEEeecCCCcccCeEECCCC-CEEEEEEcCCCceEEEEEECCCCc-----eEecc-CCCCCCCCeECCCC-CEEEEEEcc
Confidence 33343345556778999999 566554433 368888875443 22232 23356788999976 55544433
Q ss_pred C-----CcEEEEECCCC
Q 039302 393 D-----NQLTIWDLSLE 404 (479)
Q Consensus 393 D-----g~I~iwdl~~~ 404 (479)
. ..|.++|+...
T Consensus 398 ~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 398 PGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCCCcceEEEEECCCC
Confidence 3 25777777544
No 236
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=1.5e-11 Score=111.81 Aligned_cols=255 Identities=14% Similarity=0.228 Sum_probs=170.4
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC------------Cce
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK------------DEG 236 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v 236 (479)
..-|.+|.|...| .+||||..+|.|.+|.-....+. .......++.|. ..|
T Consensus 25 adiis~vef~~~G-e~LatGdkgGRVv~f~r~~~~~~----------------ey~~~t~fqshepEFDYLkSleieEKi 87 (433)
T KOG1354|consen 25 ADIISAVEFDHYG-ERLATGDKGGRVVLFEREKLYKG----------------EYNFQTEFQSHEPEFDYLKSLEIEEKI 87 (433)
T ss_pred hcceeeEEeeccc-ceEeecCCCCeEEEeeccccccc----------------ceeeeeeeeccCcccchhhhhhhhhhh
Confidence 4568899999999 79999999999999987663221 011222233332 368
Q ss_pred EEEEeCCCCCC-eEEEEeCCCeEEEEecCCCCccc------------------cC-------------CC-CcccCCCcE
Q 039302 237 YAIDWNPVAPG-RLVSGDCNSCIHLWEPASDATWN------------------VD-------------PN-PFIGHAASV 283 (479)
Q Consensus 237 ~~l~~s~~~~~-~l~sg~~dg~I~lwd~~~~~~~~------------------~~-------------~~-~~~~h~~~V 283 (479)
..+.|.+++.. .++...+|.+|++|.+....... ++ .+ .-.+|+.-|
T Consensus 88 nkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhi 167 (433)
T KOG1354|consen 88 NKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHI 167 (433)
T ss_pred hhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEe
Confidence 89999988764 56677779999999986532211 00 00 013688889
Q ss_pred EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE--EecCC-----CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 284 EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHN-----ADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 284 ~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~--~~~h~-----~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
++|.++.+.. .|+++. |=.|.+|.+.-...+... ++.++ .-|++..|+|...++|+-.+..|+|++.|+|.
T Consensus 168 NSIS~NsD~E-t~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 168 NSISVNSDKE-TFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred eeeeecCccc-eEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 9999999888 666654 788999998765433222 23332 35889999999889999999999999999995
Q ss_pred CCCCCceEEEe------------ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCC
Q 039302 357 LKGGDSVVAHF------------EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAP 424 (479)
Q Consensus 357 ~~~~~~~~~~~------------~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 424 (479)
..........| ..--..|..+.|++.+ +++++-. =-+|++||+.....+
T Consensus 246 ~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sG-ryilsRD-yltvk~wD~nme~~p----------------- 306 (433)
T KOG1354|consen 246 SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSG-RYILSRD-YLTVKLWDLNMEAKP----------------- 306 (433)
T ss_pred hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCC-cEEEEec-cceeEEEeccccCCc-----------------
Confidence 43211111111 1123468899999954 8877653 268999999876432
Q ss_pred CCCCCceEEeecC-----------C--CCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 425 EDLPPQLLFIHQG-----------Q--KDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 425 ~~~p~~l~~~h~g-----------~--~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
.....+|.- . -.=..++|+-++. .+++|+..+ +++|.
T Consensus 307 ----v~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 307 ----VETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-YVMTGSYNNVFRVFN 357 (433)
T ss_pred ----ceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-eEecccccceEEEec
Confidence 233333321 0 1245789998874 888899885 55555
No 237
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.46 E-value=2.4e-10 Score=103.11 Aligned_cols=164 Identities=20% Similarity=0.260 Sum_probs=117.3
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
....++|..|++.++. +++. -.+.|+||.+...+ +.++.+.....+=--++..|..
T Consensus 91 l~f~~~I~~V~l~r~r--iVvv--l~~~I~VytF~~n~--------------------k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 91 LSFNSEIKAVKLRRDR--IVVV--LENKIYVYTFPDNP--------------------KLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred EEeccceeeEEEcCCe--EEEE--ecCeEEEEEcCCCh--------------------hheeeeecccCCCceEeecCCC
Confidence 3456899999999864 4433 35789999998743 3333333222111133334433
Q ss_pred CC-eEEE-EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc-EEEEEcCCCCceeeEEec
Q 039302 246 PG-RLVS-GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN-IAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 246 ~~-~l~s-g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~-I~iwD~~~~~~~~~~~~~ 322 (479)
.. .||. |-.-|.|.|-|+...... ....+.+|.+.|.|++.+-+|. ++||+|..|+ |||||.+++. .+..++.
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~--~p~~I~AH~s~Iacv~Ln~~Gt-~vATaStkGTLIRIFdt~~g~-~l~E~RR 222 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPN--APSIINAHDSDIACVALNLQGT-LVATASTKGTLIRIFDTEDGT-LLQELRR 222 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcC--CceEEEcccCceeEEEEcCCcc-EEEEeccCcEEEEEEEcCCCc-Eeeeeec
Confidence 22 3333 455689999999764331 1345789999999999999998 9999999997 7999999986 5555532
Q ss_pred --CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 323 --HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 323 --h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
....|.+|+|+|+. .+||++|+.|+|+||.++...
T Consensus 223 G~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 223 GVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred CCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCC
Confidence 34579999999999 999999999999999998643
No 238
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=1.3e-11 Score=123.99 Aligned_cols=203 Identities=12% Similarity=0.095 Sum_probs=122.6
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCC--ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADT--GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+..+...+.+.+|+|++..++.+...+ ..|++||+.. ++. ..+....+.+.+.+|+
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~---------------------g~~-~~l~~~~g~~~~~~~S 248 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT---------------------GRR-RVVANFKGSNSAPAWS 248 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCC---------------------CCE-EEeecCCCCccceEEC
Confidence 446778899999999995555443222 4599999976 222 2232233455689999
Q ss_pred CCCCCeEE-EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 243 PVAPGRLV-SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 243 ~~~~~~l~-sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
|++. .|+ +.+.+|...||.+...... ...+..+...+....|+|+++.+++++..+|...||.+.........+.
T Consensus 249 PDG~-~la~~~~~~g~~~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 249 PDGR-TLAVALSRDGNSQIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT 324 (427)
T ss_pred CCCC-EEEEEEccCCCceEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe
Confidence 9998 555 6677887777765432211 1233444555667899999994444444456777776543211222222
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCc--
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS-ADNQ-- 395 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg---~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s-~Dg~-- 395 (479)
.........+|+|++ .+|+..+.++ .|.+||+..+. .. .+.. ........|+|++ ..|+.++ ..|.
T Consensus 325 ~~g~~~~~~~~SpDG-~~Ia~~s~~~g~~~I~v~d~~~g~----~~-~lt~-~~~~~~p~~spdg-~~l~~~~~~~g~~~ 396 (427)
T PRK02889 325 FTGSYNTSPRISPDG-KLLAYISRVGGAFKLYVQDLATGQ----VT-ALTD-TTRDESPSFAPNG-RYILYATQQGGRSV 396 (427)
T ss_pred cCCCCcCceEECCCC-CEEEEEEccCCcEEEEEEECCCCC----eE-EccC-CCCccCceECCCC-CEEEEEEecCCCEE
Confidence 223334567899999 6676665544 69999998765 22 2322 2344678999976 5555554 4444
Q ss_pred EEEEEC
Q 039302 396 LTIWDL 401 (479)
Q Consensus 396 I~iwdl 401 (479)
+.+.++
T Consensus 397 l~~~~~ 402 (427)
T PRK02889 397 LAAVSS 402 (427)
T ss_pred EEEEEC
Confidence 444444
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=3.8e-11 Score=115.88 Aligned_cols=201 Identities=14% Similarity=0.193 Sum_probs=147.9
Q ss_pred EEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeC
Q 039302 175 IRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDC 254 (479)
Q Consensus 175 v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~ 254 (479)
++++.-...+++. +....|+-+++.. +..+..|....++++++..++... +|++|+.
T Consensus 139 m~y~~~scDly~~-gsg~evYRlNLEq---------------------GrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~ 195 (703)
T KOG2321|consen 139 MKYHKPSCDLYLV-GSGSEVYRLNLEQ---------------------GRFLNPFETDSGELNVVSINEEHG-LLACGTE 195 (703)
T ss_pred ccccCCCccEEEe-ecCcceEEEEccc---------------------cccccccccccccceeeeecCccc-eEEeccc
Confidence 4444333344444 4445677778776 677777777778999999999886 9999999
Q ss_pred CCeEEEEecCCCCccccC--CCCcccC-----CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 255 NSCIHLWEPASDATWNVD--PNPFIGH-----AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 255 dg~I~lwd~~~~~~~~~~--~~~~~~h-----~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+|.|-.||.+........ ......| ...|+++.|+.+|- .+++|+.+|.|.|||+|+.+..+..-.....+|
T Consensus 196 ~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi 274 (703)
T KOG2321|consen 196 DGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI 274 (703)
T ss_pred CceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence 999999999875432210 0112223 34599999998877 899999999999999999874444335556789
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..+.|.+.+..--+...+...++|||-.+++ +...+.. ...++.+++-|.. .+|.++-.+..+..|=+....
T Consensus 275 ~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk----~~asiEp-t~~lND~C~~p~s-Gm~f~Ane~~~m~~yyiP~LG 346 (703)
T KOG2321|consen 275 KKLDWQDTDQQNKVVSMDKRILKIWDECTGK----PMASIEP-TSDLNDFCFVPGS-GMFFTANESSKMHTYYIPSLG 346 (703)
T ss_pred eeecccccCCCceEEecchHHhhhcccccCC----ceeeccc-cCCcCceeeecCC-ceEEEecCCCcceeEEccccC
Confidence 9999987743333344566799999999988 6776664 5569999999954 888999888888888777654
No 240
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.42 E-value=7.5e-13 Score=119.41 Aligned_cols=223 Identities=18% Similarity=0.260 Sum_probs=154.1
Q ss_pred EEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEe
Q 039302 174 RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD 253 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~ 253 (479)
-++|+|+| +++|+++.- .+.|-|..+ .+..+.|. --+.|.-+.|..+...+|....
T Consensus 13 ~c~fSp~g-~yiAs~~~y-rlviRd~~t---------------------lq~~qlf~-cldki~yieW~ads~~ilC~~y 68 (447)
T KOG4497|consen 13 FCSFSPCG-NYIASLSRY-RLVIRDSET---------------------LQLHQLFL-CLDKIVYIEWKADSCHILCVAY 68 (447)
T ss_pred ceeECCCC-Ceeeeeeee-EEEEeccch---------------------hhHHHHHH-HHHHhhheeeeccceeeeeeee
Confidence 35799999 899997665 777877766 22222221 1346778999998876777788
Q ss_pred CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEc
Q 039302 254 CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWN 333 (479)
Q Consensus 254 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~ 333 (479)
.++.|.+|++... .|. ..+..-...+..++|+|+|++++.+...+-.|.+|.+.+.+... +.-....+..++|+
T Consensus 69 k~~~vqvwsl~Qp-ew~---ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~pK~~~kg~~f~ 142 (447)
T KOG4497|consen 69 KDPKVQVWSLVQP-EWY---CKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHPKTNVKGYAFH 142 (447)
T ss_pred ccceEEEEEeecc-eeE---EEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--ecccccCceeEEEC
Confidence 8999999999663 333 23445567899999999999889999999999999999875322 23234456899999
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHH
Q 039302 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEF 413 (479)
Q Consensus 334 p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~ 413 (479)
|++ .+.+..+.-.....+.+..-+. ...+..|...+-..+.+.|+|++ +.|| +||--.+.
T Consensus 143 ~dg-~f~ai~sRrDCkdyv~i~~c~~-W~ll~~f~~dT~DltgieWsPdg-~~la---------Vwd~~Ley-------- 202 (447)
T KOG4497|consen 143 PDG-QFCAILSRRDCKDYVQISSCKA-WILLKEFKLDTIDLTGIEWSPDG-NWLA---------VWDNVLEY-------- 202 (447)
T ss_pred CCC-ceeeeeecccHHHHHHHHhhHH-HHHHHhcCCCcccccCceECCCC-cEEE---------Eecchhhh--------
Confidence 999 7777776543322222221111 23566677777788999999965 6554 67754432
Q ss_pred hhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceE
Q 039302 414 KAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNI 464 (479)
Q Consensus 414 ~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~i 464 (479)
.++.-|. ..++..++|+|.+. +++.|+.|+ ++|
T Consensus 203 ----------------kv~aYe~-~lG~k~v~wsP~~q-flavGsyD~~lrv 236 (447)
T KOG4497|consen 203 ----------------KVYAYER-GLGLKFVEWSPCNQ-FLAVGSYDQMLRV 236 (447)
T ss_pred ----------------eeeeeee-ccceeEEEeccccc-eEEeeccchhhhh
Confidence 1222222 25799999999885 888899887 544
No 241
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.41 E-value=1.7e-12 Score=128.24 Aligned_cols=212 Identities=22% Similarity=0.375 Sum_probs=163.7
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC--ceEEEEeCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD--EGYAIDWNP 243 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~ 243 (479)
+.-.+.++.+..+|.|.. +|.++.-| +.+-|+... ..+-.-+. |.. .|-.+.|+|
T Consensus 21 l~v~~~~~a~si~p~grd-i~lAsr~g-l~i~dld~p--------------------~~ppr~l~-h~tpw~vad~qws~ 77 (1081)
T KOG0309|consen 21 LKVDGGFNAVSINPSGRD-IVLASRQG-LYIIDLDDP--------------------FTPPRWLH-HITPWQVADVQWSP 77 (1081)
T ss_pred EEecCcccceeeccccch-hhhhhhcC-eEEEeccCC--------------------CCCceeee-ccCcchhcceeccc
Confidence 445688999999999954 44555554 667787762 34433332 333 677888988
Q ss_pred CCCC-eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 244 VAPG-RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 244 ~~~~-~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.... +-++......-.+|++.......+ -..+.+|+..|+++.|+|+.+.++++|+.|..+..||+|+...++..+..
T Consensus 78 h~a~~~wiVsts~qkaiiwnlA~ss~~aI-ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~ 156 (1081)
T KOG0309|consen 78 HPAKPYWIVSTSNQKAIIWNLAKSSSNAI-EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSS 156 (1081)
T ss_pred CCCCceeEEecCcchhhhhhhhcCCccce-EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeec
Confidence 6542 444444455666899866443221 23467899999999999999999999999999999999999878877766
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
-......+.|+...++.||+ +....|.+||+|.+.. ++..+++|...|++++|+......+.+++.|++|++||..
T Consensus 157 w~s~asqVkwnyk~p~vlas-shg~~i~vwd~r~gs~---pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 157 WRSAASQVKWNYKDPNVLAS-SHGNDIFVWDLRKGST---PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred ccccCceeeecccCcchhhh-ccCCceEEEeccCCCc---ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 66778899999888666654 5667899999999886 8999999999999999988777889999999999999998
Q ss_pred CCC
Q 039302 403 LEK 405 (479)
Q Consensus 403 ~~~ 405 (479)
...
T Consensus 233 kSt 235 (1081)
T KOG0309|consen 233 KST 235 (1081)
T ss_pred ccc
Confidence 764
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=1.3e-09 Score=106.49 Aligned_cols=265 Identities=11% Similarity=0.114 Sum_probs=164.5
Q ss_pred ecCCcceeEEEEecCCCcEEEEEe---CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWA---DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s---~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..-.....-+.++|++..+.++.. ..|.|..|.+...... ...+............++++
T Consensus 33 ~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~-----------------L~~~~~~~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 33 VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT-----------------LTLLNSVPSGGSSPCHIAVD 95 (345)
T ss_dssp EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE-----------------EEEEEEEEESSSCEEEEEEC
T ss_pred ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce-----------------eEEeeeeccCCCCcEEEEEe
Confidence 334556677899999966665544 3689999998873111 12233333233345579999
Q ss_pred CCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCc----------ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 243 PVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPF----------IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 243 ~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~----------~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
|++. +|+++. .+|.|.++++...+........+ ........++.|+|+++.++++.-....|.+|++.
T Consensus 96 ~~g~-~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~ 174 (345)
T PF10282_consen 96 PDGR-FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDID 174 (345)
T ss_dssp TTSS-EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-
T ss_pred cCCC-EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEe
Confidence 9998 666665 58999999998754322111101 11234578999999999555555556689999998
Q ss_pred CCCcee---eEE-ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------CCCeEEEEEeC
Q 039302 312 VGKSAL---MSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------KHPVTSIEWSP 381 (479)
Q Consensus 312 ~~~~~~---~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------~~~I~~v~~sp 381 (479)
.....+ ..+ ......-..+.|+|++..++++.-.++.|.++++.........+...... ......|.++|
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~isp 254 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISP 254 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-T
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEec
Confidence 764212 122 23456678999999996677778888999999998332111122222211 12578899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 382 HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
++..++++....+.|.+|++..... ....+-....+....+.++++|++.+++++...++
T Consensus 255 dg~~lyvsnr~~~sI~vf~~d~~~g--------------------~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 255 DGRFLYVSNRGSNSISVFDLDPATG--------------------TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp TSSEEEEEECTTTEEEEEEECTTTT--------------------TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred CCCEEEEEeccCCEEEEEEEecCCC--------------------ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCC
Confidence 7744555556688999999954311 00112222333345899999999988888776666
Q ss_pred -ceEEeee
Q 039302 462 -FNILMPS 468 (479)
Q Consensus 462 -i~iw~~~ 468 (479)
|.+|+..
T Consensus 315 ~v~vf~~d 322 (345)
T PF10282_consen 315 TVSVFDID 322 (345)
T ss_dssp EEEEEEEE
T ss_pred eEEEEEEe
Confidence 9999874
No 243
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.39 E-value=2.7e-12 Score=137.63 Aligned_cols=193 Identities=18% Similarity=0.328 Sum_probs=152.6
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEeCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDWNPV 244 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~ 244 (479)
+.|-..|.|+.-+|..+. .+||+.||.|++|.... .+.+..++. -...|+.+.|+..
T Consensus 2205 k~~v~~v~r~~sHp~~~~-Yltgs~dgsv~~~~w~~---------------------~~~v~~~rt~g~s~vtr~~f~~q 2262 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPY-YLTGSQDGSVRMFEWGH---------------------GQQVVCFRTAGNSRVTRSRFNHQ 2262 (2439)
T ss_pred ecccCceeeecCCCCCce-EEecCCCceEEEEeccC---------------------CCeEEEeeccCcchhhhhhhccc
Confidence 344577888888998854 45899999999999987 444554432 2268999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe---CCCcEEEEEcCCCCceeeEEe
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS---VDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s---~dg~I~iwD~~~~~~~~~~~~ 321 (479)
|+ .+..+..||.+.+|.+... . ....+.|.....++.|-. . ++++++ .++.+.+||..-.......-.
T Consensus 2263 Gn-k~~i~d~dg~l~l~q~~pk-~----~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~~ 2333 (2439)
T KOG1064|consen 2263 GN-KFGIVDGDGDLSLWQASPK-P----YTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVHT 2333 (2439)
T ss_pred CC-ceeeeccCCceeecccCCc-c----eeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceeee
Confidence 97 9999999999999998631 1 245677999999999975 3 677764 578999999876533222238
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...++++++-|.. .+|++||.+|.|++||+|..+ ..+++.. ++ ...+|++|+..|.|+||++
T Consensus 2334 ~H~~gaT~l~~~P~~-qllisggr~G~v~l~D~rqrq----l~h~~~~---------~~--~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2334 CHDGGATVLAYAPKH-QLLISGGRKGEVCLFDIRQRQ----LRHTFQA---------LD--TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred ecCCCceEEEEcCcc-eEEEecCCcCcEEEeehHHHH----HHHHhhh---------hh--hhheeeccCcccceEEEEc
Confidence 899999999999998 999999999999999999877 5666654 44 2479999999999999999
Q ss_pred CCCC
Q 039302 402 SLEK 405 (479)
Q Consensus 402 ~~~~ 405 (479)
....
T Consensus 2398 s~~~ 2401 (2439)
T KOG1064|consen 2398 SEFG 2401 (2439)
T ss_pred cccc
Confidence 8763
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=4.2e-10 Score=113.33 Aligned_cols=200 Identities=17% Similarity=0.160 Sum_probs=130.7
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCC---CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCN---SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+..+...+...+|+|++. +|+.+... ..|++|++.++.... +..+...+.+++|+|+++.++++.+.++
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~-~la~~~~~~~~~~i~v~d~~~g~~~~-----~~~~~~~~~~~~~spDg~~l~~~~~~~~ 256 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQ-KLAYVSFESGKPEIYVQDLATGQREK-----VASFPGMNGAPAFSPDGSKLAVSLSKDG 256 (417)
T ss_pred EEeecCCCceecccCCCCCC-EEEEEEcCCCCcEEEEEECCCCCEEE-----eecCCCCccceEECCCCCEEEEEECCCC
Confidence 44555666788999999998 77776543 479999997754322 2234455677899999985555665555
Q ss_pred --cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe-CCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 304 --NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 304 --~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
.|.+||+.++. ...+..+........|+|++ ..|+..+ ..+ .|+++|+.... ...+..+...+..+.
T Consensus 257 ~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~s~dg-~~l~~~s~~~g~~~iy~~d~~~~~-----~~~l~~~~~~~~~~~ 328 (417)
T TIGR02800 257 NPDIYVMDLDGKQ--LTRLTNGPGIDTEPSWSPDG-KSIAFTSDRGGSPQIYMMDADGGE-----VRRLTFRGGYNASPS 328 (417)
T ss_pred CccEEEEECCCCC--EEECCCCCCCCCCEEECCCC-CEEEEEECCCCCceEEEEECCCCC-----EEEeecCCCCccCeE
Confidence 58888988764 33444444445577999999 5554444 344 57778877654 334444566778899
Q ss_pred EeCCCCCEEEEEeCCC---cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEE
Q 039302 379 WSPHEGSTLAVSSADN---QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIV 455 (479)
Q Consensus 379 ~sp~~~~~las~s~Dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~ 455 (479)
|+|++ .+|+.++.++ .|.+||+..... +.+... .......|+|++..+++
T Consensus 329 ~spdg-~~i~~~~~~~~~~~i~~~d~~~~~~-----------------------~~l~~~---~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 329 WSPDG-DLIAFVHREGGGFNIAVMDLDGGGE-----------------------RVLTDT---GLDESPSFAPNGRMILY 381 (417)
T ss_pred ECCCC-CEEEEEEccCCceEEEEEeCCCCCe-----------------------EEccCC---CCCCCceECCCCCEEEE
Confidence 99966 7777776665 788888876421 111111 12445689999987777
Q ss_pred EEcCCCceEEee
Q 039302 456 STAADGFNILMP 467 (479)
Q Consensus 456 s~~~dgi~iw~~ 467 (479)
+...++...+.+
T Consensus 382 ~~~~~~~~~l~~ 393 (417)
T TIGR02800 382 ATTRGGRGVLGL 393 (417)
T ss_pred EEeCCCcEEEEE
Confidence 777666443333
No 245
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=7.2e-11 Score=114.73 Aligned_cols=198 Identities=16% Similarity=0.232 Sum_probs=150.8
Q ss_pred cCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC------C---------
Q 039302 179 SQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN------P--------- 243 (479)
Q Consensus 179 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s------~--------- 243 (479)
|....++|....||.++||+.....-.. ...|...+ ++.+.++.|. |
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~---------------e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~ 63 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQ---------------EFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKA 63 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeee---------------eeccchhc---cCcceeEEEEEEeccchHHHHhHHHH
Confidence 3344688999999999999997732111 11222222 1233344442 1
Q ss_pred ----CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 244 ----VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 244 ----~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
.+...|+-|...|.|.++++..++.... .....|.+.|+++.++.+-. .|.+++.|+.+..|+..... ....
T Consensus 64 ~~~s~~t~~lvlgt~~g~v~~ys~~~g~it~~--~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~-~~~~ 139 (541)
T KOG4547|consen 64 KKASLDTSMLVLGTPQGSVLLYSVAGGEITAK--LSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKV-IIRI 139 (541)
T ss_pred hhccCCceEEEeecCCccEEEEEecCCeEEEE--EecCCCCCcceeeecccccC-ceEecCCceeEEEEecccce-eeee
Confidence 1122788899999999999987655321 23457999999999998877 99999999999999999875 6667
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC-----CCCEEEEEeCCC
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH-----EGSTLAVSSADN 394 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~-----~~~~las~s~Dg 394 (479)
+.+....+.+++.+|++ ..|++++ +.|++||+.+.+ .+.+|.+|.++|++++|--. +..+|.+...+.
T Consensus 140 ~~~~~~~~~sl~is~D~-~~l~~as--~~ik~~~~~~ke----vv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r 212 (541)
T KOG4547|consen 140 WKEQKPLVSSLCISPDG-KILLTAS--RQIKVLDIETKE----VVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAER 212 (541)
T ss_pred eccCCCccceEEEcCCC-CEEEecc--ceEEEEEccCce----EEEEecCCCcceEEEEEEEeccccccceeeecccccc
Confidence 78888889999999998 8888877 689999999998 89999999999999999875 446677777788
Q ss_pred cEEEEECCCCC
Q 039302 395 QLTIWDLSLEK 405 (479)
Q Consensus 395 ~I~iwdl~~~~ 405 (479)
-+.+|-+....
T Consensus 213 ~i~~w~v~~~~ 223 (541)
T KOG4547|consen 213 GITVWVVEKED 223 (541)
T ss_pred ceeEEEEEccc
Confidence 89999887753
No 246
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=7e-11 Score=121.56 Aligned_cols=193 Identities=19% Similarity=0.211 Sum_probs=147.4
Q ss_pred EEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-----ceEEEEeCCCCCCeE
Q 039302 175 IRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-----EGYAIDWNPVAPGRL 249 (479)
Q Consensus 175 v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~s~~~~~~l 249 (479)
..+.-.+ ..++.++.+..+.|||.... ..+.... +.. ...-+-+++..- ++
T Consensus 93 ~~l~~e~-k~i~l~~~~ns~~i~d~~~~---------------------~~~~~i~-~~er~~l~~~~~~g~s~~~~-~i 148 (967)
T KOG0974|consen 93 AKLFEEN-KKIALVTSRNSLLIRDSKNS---------------------SVLSKIQ-SDERCTLYSSLIIGDSAEEL-YI 148 (967)
T ss_pred cchhhhc-ceEEEEEcCceEEEEecccC---------------------ceehhcC-CCceEEEEeEEEEeccCcEE-EE
Confidence 3444444 56777788889999998762 1111111 111 112233344443 89
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
++|+.-+.|.+|+....+. ...+.+|.+.+-++.|+-++. +++++|+|.++|+|++.+.+.......+|...|..
T Consensus 149 ~~gsv~~~iivW~~~~dn~----p~~l~GHeG~iF~i~~s~dg~-~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~ 223 (967)
T KOG0974|consen 149 ASGSVFGEIIVWKPHEDNK----PIRLKGHEGSIFSIVTSLDGR-YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWA 223 (967)
T ss_pred EeccccccEEEEeccccCC----cceecccCCceEEEEEccCCc-EEEEEecCcceeeeecccccccCcccccccceeEE
Confidence 9999999999999974333 125889999999999999999 99999999999999999987555567889999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
++|.|+ .|+|++.|.+.++|+..... +..+..|. ..|+.+...+. ...++|++.|+.+++|++....
T Consensus 224 ~~~~~n---~i~t~gedctcrvW~~~~~~-----l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 224 CCFLPN---RIITVGEDCTCRVWGVNGTQ-----LEVYDEHSGKGIWKIAVPIG-VIIKVTGGNDSTLKLWDLNGRG 291 (967)
T ss_pred EEeccc---eeEEeccceEEEEEecccce-----ehhhhhhhhcceeEEEEcCC-ceEEEeeccCcchhhhhhhccc
Confidence 999995 89999999999999655433 44777775 46999999884 4899999999999999987643
No 247
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=2e-09 Score=108.70 Aligned_cols=202 Identities=12% Similarity=0.085 Sum_probs=120.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCC--ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADT--GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
.+..+...+...+|+|++..++.+...+ ..|.+|++... .. ..+....+.+...+|
T Consensus 193 ~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g---------------------~~-~~l~~~~g~~~~~~~ 250 (430)
T PRK00178 193 TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTG---------------------RR-EQITNFEGLNGAPAW 250 (430)
T ss_pred EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCC---------------------CE-EEccCCCCCcCCeEE
Confidence 3446777899999999996665554333 36888898762 11 122222334457899
Q ss_pred CCCCCCeEE-EEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCce
Q 039302 242 NPVAPGRLV-SGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--NIAIWDTRVGKSA 316 (479)
Q Consensus 242 s~~~~~~l~-sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--~I~iwD~~~~~~~ 316 (479)
+|++. .|+ +.+.+| .|++||+.++... .+..+........|+|+++.++++...+| .|.++|+.+++.
T Consensus 251 SpDG~-~la~~~~~~g~~~Iy~~d~~~~~~~-----~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~- 323 (430)
T PRK00178 251 SPDGS-KLAFVLSKDGNPEIYVMDLASRQLS-----RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA- 323 (430)
T ss_pred CCCCC-EEEEEEccCCCceEEEEECCCCCeE-----EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-
Confidence 99998 665 555555 6888898765432 23334445667899999984444444444 466677776642
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEe-CCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGS-DDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
..+..........+|+|++ ..|+..+ .++ .|.+||+.++. . ..+. +........|+|++..++++...+
T Consensus 324 -~~lt~~~~~~~~~~~Spdg-~~i~~~~~~~~~~~l~~~dl~tg~----~-~~lt-~~~~~~~p~~spdg~~i~~~~~~~ 395 (430)
T PRK00178 324 -ERVTFVGNYNARPRLSADG-KTLVMVHRQDGNFHVAAQDLQRGS----V-RILT-DTSLDESPSVAPNGTMLIYATRQQ 395 (430)
T ss_pred -EEeecCCCCccceEECCCC-CEEEEEEccCCceEEEEEECCCCC----E-EEcc-CCCCCCCceECCCCCEEEEEEecC
Confidence 2222122233457899999 5555444 344 58889988765 2 2222 122233568999774444444444
Q ss_pred Cc--EEEEECC
Q 039302 394 NQ--LTIWDLS 402 (479)
Q Consensus 394 g~--I~iwdl~ 402 (479)
+. |.++++.
T Consensus 396 g~~~l~~~~~~ 406 (430)
T PRK00178 396 GRGVLMLVSIN 406 (430)
T ss_pred CceEEEEEECC
Confidence 44 5555654
No 248
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.30 E-value=1.2e-09 Score=109.95 Aligned_cols=200 Identities=14% Similarity=0.088 Sum_probs=125.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCC--ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADT--GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~d--g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
.+..+...+...+|+|++..++.+...+ ..|++||+.. ++. ..+..+...+.+++|
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~---------------------g~~-~~~~~~~~~~~~~~~ 241 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT---------------------GQR-EKVASFPGMNGAPAF 241 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCC---------------------CCE-EEeecCCCCccceEE
Confidence 3445677789999999996555443332 4799999876 211 223334456677999
Q ss_pred CCCCCCeEEEEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCC--cEEEEEcCCCCce
Q 039302 242 NPVAPGRLVSGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDG--NIAIWDTRVGKSA 316 (479)
Q Consensus 242 s~~~~~~l~sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg--~I~iwD~~~~~~~ 316 (479)
+|++..++++.+.++ .|++|++.++... .+..+........|+|+++ .|+.++ ..+ .|.++|+.+++
T Consensus 242 spDg~~l~~~~~~~~~~~i~~~d~~~~~~~-----~l~~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~~-- 313 (417)
T TIGR02800 242 SPDGSKLAVSLSKDGNPDIYVMDLDGKQLT-----RLTNGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGGE-- 313 (417)
T ss_pred CCCCCEEEEEECCCCCccEEEEECCCCCEE-----ECCCCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCCC--
Confidence 999983444555554 5888898765332 2233344455678999998 555444 344 57777877654
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg---~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
...+..+...+..+.|+|++ .+|+.++.++ .|.+||+.+.. ...+... .......|+|++ ..|+.++.+
T Consensus 314 ~~~l~~~~~~~~~~~~spdg-~~i~~~~~~~~~~~i~~~d~~~~~-----~~~l~~~-~~~~~p~~spdg-~~l~~~~~~ 385 (417)
T TIGR02800 314 VRRLTFRGGYNASPSWSPDG-DLIAFVHREGGGFNIAVMDLDGGG-----ERVLTDT-GLDESPSFAPNG-RMILYATTR 385 (417)
T ss_pred EEEeecCCCCccCeEECCCC-CEEEEEEccCCceEEEEEeCCCCC-----eEEccCC-CCCCCceECCCC-CEEEEEEeC
Confidence 33444455667788999999 6777666665 78999988744 2223222 234566899976 555555544
Q ss_pred C---cEEEEEC
Q 039302 394 N---QLTIWDL 401 (479)
Q Consensus 394 g---~I~iwdl 401 (479)
+ .+.+.+.
T Consensus 386 ~~~~~l~~~~~ 396 (417)
T TIGR02800 386 GGRGVLGLVST 396 (417)
T ss_pred CCcEEEEEEEC
Confidence 3 3444443
No 249
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.30 E-value=1.9e-11 Score=120.94 Aligned_cols=220 Identities=17% Similarity=0.263 Sum_probs=166.3
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
-+++.+-+|...|+.+.|.|+.+.++||++.|-.|+.||+.. ...++..+..-......+
T Consensus 105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rS--------------------p~~p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRS--------------------PHRPFYSTSSWRSAASQV 164 (1081)
T ss_pred ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccC--------------------CCcceeeeecccccCcee
Confidence 456788999999999999999999999999999999999998 356777776666677899
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|+...+ .+++.+....|++||.+.+.... ..+++|...|+.+.|+..-...+.+++.||+|+.||.......-..
T Consensus 165 kwnyk~p-~vlasshg~~i~vwd~r~gs~pl---~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 165 KWNYKDP-NVLASSHGNDIFVWDLRKGSTPL---CSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred eecccCc-chhhhccCCceEEEeccCCCcce---EEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 9999888 45555567799999998876543 4567799999999998765557999999999999998765332222
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCC------CCceEEEeecCCCCeEEEEEeCCC---------
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKG------GDSVVAHFEYHKHPVTSIEWSPHE--------- 383 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~------~~~~~~~~~~h~~~I~~v~~sp~~--------- 383 (479)
......+|..-++-|.+.-+++.-... ..+.+++.++... ...++++|.||...|....|-...
T Consensus 241 ~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 241 TVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred eccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcc
Confidence 334456777778888775444432222 2444554443221 134899999999999888775422
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 039302 384 GSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~ 403 (479)
...|+|=|.|..+++|-+..
T Consensus 321 dfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ceeEEEeecCCceEeeeccH
Confidence 24799999999999998864
No 250
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=8.6e-10 Score=111.38 Aligned_cols=202 Identities=12% Similarity=0.075 Sum_probs=117.6
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+..+...+...+|+|+|..++.+...++ .|++||+.. ++. ..+..........+|+
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~t---------------------g~~-~~lt~~~g~~~~~~wS 270 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYT---------------------QVR-EKVTSFPGINGAPRFS 270 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCC---------------------CCe-EEecCCCCCcCCeeEC
Confidence 3455677889999999966665544444 577888765 121 1121112233478999
Q ss_pred CCCCCeEE-EEeCCCe--EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc--EEEEEcCCCCcee
Q 039302 243 PVAPGRLV-SGDCNSC--IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN--IAIWDTRVGKSAL 317 (479)
Q Consensus 243 ~~~~~~l~-sg~~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~--I~iwD~~~~~~~~ 317 (479)
|++. .|+ +.+.+|. |+++|+.++.. ..+..+.......+|+|+++.++++...++. |.++|+.+++.
T Consensus 271 PDG~-~La~~~~~~g~~~Iy~~dl~tg~~-----~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-- 342 (448)
T PRK04792 271 PDGK-KLALVLSKDGQPEIYVVDIATKAL-----TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-- 342 (448)
T ss_pred CCCC-EEEEEEeCCCCeEEEEEECCCCCe-----EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--
Confidence 9998 554 5566675 77778766433 2233344556778999999944455444454 55667766642
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
..+..........+|+|++..+++++..++ .|.++|+.++. . ..+... .......|+|++..++++...++.
T Consensus 343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~----~-~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~ 416 (448)
T PRK04792 343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA----M-QVLTST-RLDESPSVAPNGTMVIYSTTYQGK 416 (448)
T ss_pred EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC----e-EEccCC-CCCCCceECCCCCEEEEEEecCCc
Confidence 222222223345799999954445444455 45557776654 2 222221 122345899977445555555554
Q ss_pred --EEEEECC
Q 039302 396 --LTIWDLS 402 (479)
Q Consensus 396 --I~iwdl~ 402 (479)
+.++++.
T Consensus 417 ~~l~~~~~~ 425 (448)
T PRK04792 417 QVLAAVSID 425 (448)
T ss_pred eEEEEEECC
Confidence 5666653
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=2.3e-10 Score=117.87 Aligned_cols=197 Identities=15% Similarity=0.115 Sum_probs=145.7
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
..+.-... +++.+..+..+.+||................--..+.-+.++++.- ++++|+.-+.|.+|+....+.+.
T Consensus 93 ~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~-~i~~gsv~~~iivW~~~~dn~p~- 169 (967)
T KOG0974|consen 93 AKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEEL-YIASGSVFGEIIVWKPHEDNKPI- 169 (967)
T ss_pred cchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEE-EEEeccccccEEEEeccccCCcc-
Confidence 33444444 8888888999999998765332110111111111223344566555 89999999999999998554343
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|.+.|.++.|+-++ .++++.|+|.++++|++.+.+. ...+.-+|+..|+.+.|.|+ .++|++.|.+.++
T Consensus 170 ~l~GHeG~iF~i~~s~dg-~~i~s~SdDRsiRlW~i~s~~~---~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrv 242 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDG-RYIASVSDDRSIRLWPIDSREV---LGCTGFGHSARVWACCFLPN---RIITVGEDCTCRV 242 (967)
T ss_pred eecccCCceEEEEEccCC-cEEEEEecCcceeeeecccccc---cCcccccccceeEEEEeccc---eeEEeccceEEEE
Confidence 689999999999999999 9999999999999999999885 33466789999999999984 8999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|+..... .+.+..|.+ ..|..++.++... +++++++|+ +++|++...
T Consensus 243 W~~~~~~-----------------------l~~y~~h~g-~~iw~~~~~~~~~-~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 243 WGVNGTQ-----------------------LEVYDEHSG-KGIWKIAVPIGVI-IKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred Eecccce-----------------------ehhhhhhhh-cceeEEEEcCCce-EEEeeccCcchhhhhhhcc
Confidence 9655432 123445553 4799999999875 777777777 999987554
No 252
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=2.2e-09 Score=108.44 Aligned_cols=195 Identities=15% Similarity=0.143 Sum_probs=121.3
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCC---CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCN---SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+..+...+....|+|++. +|+..+.+ ..|.+|++.++.... +....+.+....|+|+++.++++.+.+|
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~-~la~~s~~~~~~~l~~~~l~~g~~~~-----l~~~~g~~~~~~~SpDG~~la~~~~~~g 265 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGK-RIAYVSFEQKRPRIFVQNLDTGRREQ-----ITNFEGLNGAPAWSPDGSKLAFVLSKDG 265 (430)
T ss_pred eEEecCCCceeeeeECCCCC-EEEEEEcCCCCCEEEEEECCCCCEEE-----ccCCCCCcCCeEECCCCCEEEEEEccCC
Confidence 44545677889999999998 77665533 368999997754322 2222234456899999984545666565
Q ss_pred --cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 304 --NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 304 --~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
.|.+||+.++. ...+..+........|+|++..++++...+| .|+++|+..++ . ..+...........|
T Consensus 266 ~~~Iy~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~----~-~~lt~~~~~~~~~~~ 338 (430)
T PRK00178 266 NPEIYVMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR----A-ERVTFVGNYNARPRL 338 (430)
T ss_pred CceEEEEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC----E-EEeecCCCCccceEE
Confidence 58888998764 3344445555667899999944555544444 57777776654 2 222222233456789
Q ss_pred eCCCCCEEEEEeC-CC--cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEE
Q 039302 380 SPHEGSTLAVSSA-DN--QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVS 456 (479)
Q Consensus 380 sp~~~~~las~s~-Dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s 456 (479)
+|++ ..|+..+. ++ .|.+||+..... ..+ ... .......|+|++..++++
T Consensus 339 Spdg-~~i~~~~~~~~~~~l~~~dl~tg~~-----------------------~~l-t~~--~~~~~p~~spdg~~i~~~ 391 (430)
T PRK00178 339 SADG-KTLVMVHRQDGNFHVAAQDLQRGSV-----------------------RIL-TDT--SLDESPSVAPNGTMLIYA 391 (430)
T ss_pred CCCC-CEEEEEEccCCceEEEEEECCCCCE-----------------------EEc-cCC--CCCCCceECCCCCEEEEE
Confidence 9976 55555543 43 477888876531 111 111 122356899999877777
Q ss_pred EcCCC
Q 039302 457 TAADG 461 (479)
Q Consensus 457 ~~~dg 461 (479)
...++
T Consensus 392 ~~~~g 396 (430)
T PRK00178 392 TRQQG 396 (430)
T ss_pred EecCC
Confidence 76655
No 253
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.26 E-value=6.7e-09 Score=101.60 Aligned_cols=247 Identities=13% Similarity=0.057 Sum_probs=146.8
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSG 252 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 252 (479)
..+.++|++.. +.+++.||.|.++|+.+ .+.+.++.. .....+++++++++ +++++
T Consensus 40 ~~~~~s~Dgr~-~yv~~rdg~vsviD~~~---------------------~~~v~~i~~-G~~~~~i~~s~DG~-~~~v~ 95 (369)
T PF02239_consen 40 AGLKFSPDGRY-LYVANRDGTVSVIDLAT---------------------GKVVATIKV-GGNPRGIAVSPDGK-YVYVA 95 (369)
T ss_dssp EEEE-TT-SSE-EEEEETTSEEEEEETTS---------------------SSEEEEEE--SSEEEEEEE--TTT-EEEEE
T ss_pred eEEEecCCCCE-EEEEcCCCeEEEEECCc---------------------ccEEEEEec-CCCcceEEEcCCCC-EEEEE
Confidence 44678999954 44557899999999998 566667754 34678899999998 66655
Q ss_pred -eCCCeEEEEecCCCCccccCC-C--CcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 253 -DCNSCIHLWEPASDATWNVDP-N--PFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 253 -~~dg~I~lwd~~~~~~~~~~~-~--~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
...+.+.++|..+.+...... . ........+..|..+|... .|+..- ..+.|.+.|....+.............
T Consensus 96 n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~ 174 (369)
T PF02239_consen 96 NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFP 174 (369)
T ss_dssp EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSCEEEEEEE--TTE
T ss_pred ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEEEeccccccceeeecccccc
Confidence 578999999998755422110 0 1111345788888888888 555554 458888889887654443444445567
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-----------------------------------------------
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----------------------------------------------- 360 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----------------------------------------------- 360 (479)
....|+|++..++++...+..|-++|..+.+..
T Consensus 175 ~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~ 254 (369)
T PF02239_consen 175 HDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVH 254 (369)
T ss_dssp EEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-S
T ss_pred cccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccc
Confidence 789999999455565566678888887755310
Q ss_pred ----CceEEEeecCCCCeEEEEEeCCCCCEEEEE----eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE
Q 039302 361 ----DSVVAHFEYHKHPVTSIEWSPHEGSTLAVS----SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL 432 (479)
Q Consensus 361 ----~~~~~~~~~h~~~I~~v~~sp~~~~~las~----s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 432 (479)
+..+.++.....+ .-+..+|++ .++.+. ...++|.++|..+... ..
T Consensus 255 d~~~wkvv~~I~~~G~g-lFi~thP~s-~~vwvd~~~~~~~~~v~viD~~tl~~------------------------~~ 308 (369)
T PF02239_consen 255 DDYAWKVVKTIPTQGGG-LFIKTHPDS-RYVWVDTFLNPDADTVQVIDKKTLKV------------------------VK 308 (369)
T ss_dssp TTTBTSEEEEEE-SSSS---EE--TT--SEEEEE-TT-SSHT-EEEEECCGTEE------------------------EE
T ss_pred hhhcCeEEEEEECCCCc-ceeecCCCC-ccEEeeccCCCCCceEEEEECcCcce------------------------eE
Confidence 0122222222233 456778866 666665 4568999999987631 11
Q ss_pred Ee-ecCCCCeeeEEEeCCCCcEEEEEcCCC--ceEEeeecc
Q 039302 433 FI-HQGQKDLKELHWHTQVPGMIVSTAADG--FNILMPSNI 470 (479)
Q Consensus 433 ~~-h~g~~~V~~v~w~p~~~~ll~s~~~dg--i~iw~~~~~ 470 (479)
.. ......+..+.|+++|..+.+|.-+++ |.||+..++
T Consensus 309 ~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl 349 (369)
T PF02239_consen 309 TITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTL 349 (369)
T ss_dssp -HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTT
T ss_pred EEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCc
Confidence 11 111124888999999998888887766 999987766
No 254
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=2.8e-09 Score=107.69 Aligned_cols=194 Identities=17% Similarity=0.160 Sum_probs=117.6
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeC-CC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDC-NS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN 304 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~-dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~ 304 (479)
.+..+...+....|+|++. .|+..+. ++ .|++||+.++.... ...+. +......|+|+++.++++.+.+|.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~-~La~~s~~~g~~~L~~~dl~tg~~~~--lt~~~---g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGR-KLAYVSFENRKAEIFVQDIYTQVREK--VTSFP---GINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred EeecCCCcccCceECCCCC-EEEEEEecCCCcEEEEEECCCCCeEE--ecCCC---CCcCCeeECCCCCEEEEEEeCCCC
Confidence 4445566888999999998 7766543 33 68888987654322 12222 233467999999955556677775
Q ss_pred --EEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 305 --IAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 305 --I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
|.++|+.++. ...+..+.......+|+|++..++++...++ .|+++|+..++ . ..+...........|+
T Consensus 286 ~~Iy~~dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~----~-~~Lt~~g~~~~~~~~S 358 (448)
T PRK04792 286 PEIYVVDIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK----V-SRLTFEGEQNLGGSIT 358 (448)
T ss_pred eEEEEEECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC----E-EEEecCCCCCcCeeEC
Confidence 7777887664 3444445556678899999954555554444 46666776654 2 2222223334567999
Q ss_pred CCCCCEEEEE-eCCCcEEE--EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEE
Q 039302 381 PHEGSTLAVS-SADNQLTI--WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 381 p~~~~~las~-s~Dg~I~i--wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~ 457 (479)
|++ ..|+.. ..++...| +|+..... +.+. .+ .......|+|++..++.+.
T Consensus 359 pDG-~~l~~~~~~~g~~~I~~~dl~~g~~-----------------------~~lt--~~-~~d~~ps~spdG~~I~~~~ 411 (448)
T PRK04792 359 PDG-RSMIMVNRTNGKFNIARQDLETGAM-----------------------QVLT--ST-RLDESPSVAPNGTMVIYST 411 (448)
T ss_pred CCC-CEEEEEEecCCceEEEEEECCCCCe-----------------------EEcc--CC-CCCCCceECCCCCEEEEEE
Confidence 977 555444 44554444 56554421 1111 11 1123457999998787777
Q ss_pred cCCC
Q 039302 458 AADG 461 (479)
Q Consensus 458 ~~dg 461 (479)
..++
T Consensus 412 ~~~g 415 (448)
T PRK04792 412 TYQG 415 (448)
T ss_pred ecCC
Confidence 7666
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.25 E-value=3.6e-09 Score=106.06 Aligned_cols=208 Identities=10% Similarity=0.035 Sum_probs=118.8
Q ss_pred cCCcceeEEEEecCCCc--EEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 167 AHQGCVNRIRAMSQNPH--ICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~--~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...+.+..-+|+|+|.. ++.+...+| .|++.++... ....+.. ..+.....+|+
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g-------------------~~~~lt~---~~g~~~~p~wS 239 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP-------------------AGKKILA---LQGNQLMPTFS 239 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC-------------------CceEeec---CCCCccceEEC
Confidence 34556677899999965 333444444 4666677651 1222222 33345578999
Q ss_pred CCCCCeEEEEe-CCC----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc--CCCCc
Q 039302 243 PVAPGRLVSGD-CNS----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT--RVGKS 315 (479)
Q Consensus 243 ~~~~~~l~sg~-~dg----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~--~~~~~ 315 (479)
|+|. .|+..+ .+| .+.+|++..+..... ......+.......+|+|+|+.++.+...+|...||.+ .....
T Consensus 240 PDG~-~Laf~s~~~g~~di~~~~~~~~~g~~g~~-~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~ 317 (428)
T PRK01029 240 PRKK-LLAFISDRYGNPDLFIQSFSLETGAIGKP-RRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ 317 (428)
T ss_pred CCCC-EEEEEECCCCCcceeEEEeecccCCCCcc-eEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc
Confidence 9998 666543 233 344467654211000 01111222344577999999944444445676666644 32211
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEe-CC--CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGS-DD--GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~d--g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
....+..+...+....|+|++ ..|+..+ .+ ..|.+||+.++. . ..+......+....|+|++..+++++..
T Consensus 318 ~~~~lt~~~~~~~~p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~----~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 318 SPRLLTKKYRNSSCPAWSPDG-KKIAFCSVIKGVRQICVYDLATGR----D-YQLTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred ceEEeccCCCCccceeECCCC-CEEEEEEcCCCCcEEEEEECCCCC----e-EEccCCCCCccceEECCCCCEEEEEECC
Confidence 233344444567789999999 5555444 33 368999998776 2 3333333466789999976444444443
Q ss_pred --CCcEEEEECCCC
Q 039302 393 --DNQLTIWDLSLE 404 (479)
Q Consensus 393 --Dg~I~iwdl~~~ 404 (479)
...|.+||+...
T Consensus 392 ~g~~~L~~vdl~~g 405 (428)
T PRK01029 392 SNESELYLISLITK 405 (428)
T ss_pred CCCceEEEEECCCC
Confidence 346778888665
No 256
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=5.5e-11 Score=127.86 Aligned_cols=189 Identities=17% Similarity=0.282 Sum_probs=138.8
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.++...+.-+. ..|++++|+.+| +-+..+..||.+.+|.+.. ++....+.|.....
T Consensus 2241 ~~v~~~rt~g~-s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~p----------------------k~~~s~qchnk~~~ 2296 (2439)
T KOG1064|consen 2241 QQVVCFRTAGN-SRVTRSRFNHQG-NKFGIVDGDGDLSLWQASP----------------------KPYTSWQCHNKALS 2296 (2439)
T ss_pred CeEEEeeccCc-chhhhhhhcccC-CceeeeccCCceeecccCC----------------------cceeccccCCcccc
Confidence 45555555555 999999999999 5566668999999999875 56677888988888
Q ss_pred EEEeCCCCCCeEEEE---eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 238 AIDWNPVAPGRLVSG---DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg---~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.+.|-. . .++++ +.++++++||..-...... . -..|.+.++++++-|... +|++||.+|.|++||+|..+
T Consensus 2297 Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~--v-~~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqrq 2369 (2439)
T KOG1064|consen 2297 DFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSL--V-HTCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQRQ 2369 (2439)
T ss_pred ceeeee--h-hhhccccCCCCCcccchhcccCcccce--e-eeecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHHH
Confidence 888876 3 56665 3578999999865443221 1 278999999999999998 99999999999999999875
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-C--CCC--e--EEEEEeCCCCCEE
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-H--KHP--V--TSIEWSPHEGSTL 387 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h--~~~--I--~~v~~sp~~~~~l 387 (479)
.+..+.+ +. .. .+|++|+..|.|+||++.... .+.++.. | .+- . ..+...+ .+.|
T Consensus 2370 -l~h~~~~---------~~-~~-~~f~~~ss~g~ikIw~~s~~~----ll~~~p~e~ak~gfFr~~g~Q~~v~~--~nri 2431 (2439)
T KOG1064|consen 2370 -LRHTFQA---------LD-TR-EYFVTGSSEGNIKIWRLSEFG----LLHTFPSEHAKQGFFRNIGMQINVGQ--CNRI 2431 (2439)
T ss_pred -HHHHhhh---------hh-hh-heeeccCcccceEEEEccccc----hhhcCchhhcccchhhhcCceeeecc--CceE
Confidence 4444443 44 33 799999999999999999876 5666543 1 110 1 2223333 2567
Q ss_pred EEEeCCCc
Q 039302 388 AVSSADNQ 395 (479)
Q Consensus 388 as~s~Dg~ 395 (479)
.+|+.|++
T Consensus 2432 fsCgad~~ 2439 (2439)
T KOG1064|consen 2432 FSCGADGT 2439 (2439)
T ss_pred EEecCCCC
Confidence 77777764
No 257
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.22 E-value=7.4e-11 Score=103.51 Aligned_cols=172 Identities=17% Similarity=0.182 Sum_probs=120.5
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe--
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-- 300 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-- 300 (479)
..+...+..|+.+..+-+.+-.+. .++++..||.+.+++.+.. ..+..+.-..|.+ --+.+....+. ++.++.
T Consensus 79 i~~~~~~a~~sep~p~~~~s~~~t-~V~~~~~dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~-~i~s~~~g 153 (319)
T KOG4714|consen 79 IDPFKVLAKNSEIDPNDACTMTDN-RVCIGYADGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN-SILSGGCG 153 (319)
T ss_pred cCceeeeeccCCCCCcccccccCC-ceEecCCCceEEEEechHH--Hhhhhhccccccc-ccccceeeccc-EEecCCcc
Confidence 455666767776666666666665 8999999999999997652 1111111111211 11222222333 333322
Q ss_pred ---CCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEE
Q 039302 301 ---VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI 377 (479)
Q Consensus 301 ---~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v 377 (479)
.-+..++|+++..+..+.....- ..|.+++-+|...+++++|++||.+-+||.|+... ++..+..|+.+|+.|
T Consensus 154 ~~n~~d~~~a~~~~p~~t~~~~~~~~-~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~---p~S~l~ahk~~i~eV 229 (319)
T KOG4714|consen 154 NWNAQDNFYANTLDPIKTLIPSKKAL-DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM---PVSLLKAHKAEIWEV 229 (319)
T ss_pred eEeeccceeeeccccccccccccccc-ccchhhhCCcccccEEEEecCCCeEEEEEcccccc---hHHHHHHhhhhhhhe
Confidence 23456777777654322222222 33999999999989999999999999999999876 888899999999999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
.|+|.++..|+++++||.+.-||.+.
T Consensus 230 ~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 230 HFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred eccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999999999999999999884
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.1e-08 Score=102.56 Aligned_cols=205 Identities=13% Similarity=0.126 Sum_probs=117.9
Q ss_pred ecCCCCceEEEEeCCCCCCe-E-EEEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-
Q 039302 229 FGGHKDEGYAIDWNPVAPGR-L-VSGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG- 303 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~-l-~sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg- 303 (479)
+.........-+|+|++..+ + ++...+| .|.+.++..+.... +....+.....+|+|+|+.++++...+|
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-----lt~~~g~~~~p~wSPDG~~Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-----ILALQGNQLMPTFSPRKKLLAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-----eecCCCCccceEECCCCCEEEEEECCCCC
Confidence 43444566778999999742 2 2444444 57777887654322 2223334456899999984444443333
Q ss_pred ---cEEEEEcCCC--CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEe--CCCCCCCCceEEEeecCCCCeEE
Q 039302 304 ---NIAIWDTRVG--KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD--LRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 304 ---~I~iwD~~~~--~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD--lr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
.+.+|++..+ .........+.......+|+|++..++.+...+|...||. +..... ....+..+...+..
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~---~~~~lt~~~~~~~~ 331 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQ---SPRLLTKKYRNSSC 331 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECccccc---ceEEeccCCCCccc
Confidence 3455776653 1122222222234467899999944444444567555554 432211 23444445567788
Q ss_pred EEEeCCCCCEEEEEeC-C--CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 377 IEWSPHEGSTLAVSSA-D--NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 377 v~~sp~~~~~las~s~-D--g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
..|+|++ ..|+..+. + ..|.+||+..+.. ..+. .+...+....|+|++..+
T Consensus 332 p~wSPDG-~~Laf~~~~~g~~~I~v~dl~~g~~-----------------------~~Lt--~~~~~~~~p~wSpDG~~L 385 (428)
T PRK01029 332 PAWSPDG-KKIAFCSVIKGVRQICVYDLATGRD-----------------------YQLT--TSPENKESPSWAIDSLHL 385 (428)
T ss_pred eeECCCC-CEEEEEEcCCCCcEEEEEECCCCCe-----------------------EEcc--CCCCCccceEECCCCCEE
Confidence 9999976 66655543 3 3689999877631 1111 112346778999999877
Q ss_pred EEEEcCCC---ceEEee
Q 039302 454 IVSTAADG---FNILMP 467 (479)
Q Consensus 454 l~s~~~dg---i~iw~~ 467 (479)
++++..++ |.++++
T Consensus 386 ~f~~~~~g~~~L~~vdl 402 (428)
T PRK01029 386 VYSAGNSNESELYLISL 402 (428)
T ss_pred EEEECCCCCceEEEEEC
Confidence 77666544 455554
No 259
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.19 E-value=3.7e-09 Score=93.40 Aligned_cols=230 Identities=12% Similarity=0.038 Sum_probs=154.6
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
.+||.|+..|...+|...+. ...++....|...|.-+.=.-+....+..++.|.++++.+
T Consensus 85 ~~la~gG~~g~fd~~~~~tn--------------------~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~ 144 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTN--------------------DGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMV 144 (344)
T ss_pred cEEEeccccceeeeecccCc--------------------ccceeeecccccchhhhhhhcccccceeeccCCcceeEEE
Confidence 57889999999999999862 3333444444443332222222223678888899999998
Q ss_pred cCCCCccccCCCCcccCCCc--EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE--EecCCCCEEEEEEcCCCCc
Q 039302 263 PASDATWNVDPNPFIGHAAS--VEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS--FKAHNADVNVISWNRLASC 338 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~--V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~--~~~h~~~v~~l~~~p~~~~ 338 (479)
+..+.. .+.-|... +++++.+++++ ++++.+....|..|.+......+.. .......-.+.+|+... .
T Consensus 145 ~~~~s~------~~~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~-~ 216 (344)
T KOG4532|consen 145 VSGDSN------KFAVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSEND-L 216 (344)
T ss_pred EecCcc------cceeeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCc-c
Confidence 865432 23334433 88999999999 9999999999999999876432222 23344455788999888 8
Q ss_pred EEEEEeCCCeEEEEeCCCCCCCCceEEE----eecCCCCeEEEEEeCCCCC-EEEEEeCCCcEEEEECCCCCChHHHHHH
Q 039302 339 LLASGSDDGTFSIHDLRLLKGGDSVVAH----FEYHKHPVTSIEWSPHEGS-TLAVSSADNQLTIWDLSLEKDEEEEAEF 413 (479)
Q Consensus 339 ~l~sgs~dg~i~iwDlr~~~~~~~~~~~----~~~h~~~I~~v~~sp~~~~-~las~s~Dg~I~iwdl~~~~~~~~~~~~ 413 (479)
.+|++..||++.|||+|.... +... -..|.+.+..+.|+|.+.- +|...-.=+.+.+-|++.....+
T Consensus 217 ~FAv~~Qdg~~~I~DVR~~~t---pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q----- 288 (344)
T KOG4532|consen 217 QFAVVFQDGTCAIYDVRNMAT---PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ----- 288 (344)
T ss_pred eEEEEecCCcEEEEEeccccc---chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee-----
Confidence 999999999999999998874 3332 2348999999999985432 34444446789999999886421
Q ss_pred hhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 414 KAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 414 ~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
.--.|+...+.|. ...|..-.|+..+....++...
T Consensus 289 ----------~I~i~~d~~~~~~-tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 289 ----------VIVIPDDVERKHN-TQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred ----------EEecCcccccccc-ccccccccccCCCcccccccch
Confidence 1122333344444 2357777888777644444433
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.19 E-value=8.8e-10 Score=100.49 Aligned_cols=168 Identities=18% Similarity=0.269 Sum_probs=125.6
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
+.+++++.+.+.. ..|..|-..|+|.-+.+....+.+ ........|...+.++-|+.... .
T Consensus 68 P~~~~~~~y~~e~-~~L~vg~~ngtvtefs~sedfnkm-----------------~~~r~~~~h~~~v~~~if~~~~e-~ 128 (404)
T KOG1409|consen 68 PSPCSAMEYVSES-RRLYVGQDNGTVTEFALSEDFNKM-----------------TFLKDYLAHQARVSAIVFSLTHE-W 128 (404)
T ss_pred CCCceEeeeeccc-eEEEEEEecceEEEEEhhhhhhhc-----------------chhhhhhhhhcceeeEEecCCce-e
Confidence 4778889999887 778888999999999887643332 33445556777777777777665 6
Q ss_pred EEEEeCCCeEEEEecCCCC----------------------------c---------cccCCCCcccCCCcEEEEEECCC
Q 039302 249 LVSGDCNSCIHLWEPASDA----------------------------T---------WNVDPNPFIGHAASVEDLQWSPT 291 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~----------------------------~---------~~~~~~~~~~h~~~V~~l~~sp~ 291 (479)
+++.+.|..+.---.+.+. . .......+.+|.+.+.+++|.|.
T Consensus 129 V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~ 208 (404)
T KOG1409|consen 129 VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPG 208 (404)
T ss_pred EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCC
Confidence 7776666554321111110 0 00012346789999999999998
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 292 ESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 292 ~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
.. ++.+|..|..+.+||+-..+.....+.+|...|..++.-+.- ..|.+++.||.|-+|++...
T Consensus 209 ~~-~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 209 QR-LLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred Cc-EEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccce
Confidence 88 999999999999999987765667778999999999988877 88999999999999998744
No 261
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.18 E-value=1.2e-09 Score=108.07 Aligned_cols=255 Identities=15% Similarity=0.204 Sum_probs=173.4
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
++.....+|+.|.... .++|+|+.||.++|..+.+........+-.+ ..+...-+++.||+..|.-+.|+...
T Consensus 11 iPnnvkL~c~~WNke~-gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa------~snLsmNQtLeGH~~sV~vvTWNe~~ 83 (1189)
T KOG2041|consen 11 IPNNVKLHCAEWNKES-GYIACGGADGLLKVLKLGTDTTDLNKSGLAA------ASNLSMNQTLEGHNASVMVVTWNENN 83 (1189)
T ss_pred CCCCceEEEEEEcccC-CeEEeccccceeEEEEccccCCccccccccc------ccccchhhhhccCcceEEEEEecccc
Confidence 4556778999999977 7999999999999999987543332222111 11234456789999999999999998
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
. .|-|.+.+|-|.+|-+-.+ .|.-. ..-...++-|.+++|+.+|. .++..-.||.|.+=.+...+.--..++ ..
T Consensus 84 Q-KLTtSDt~GlIiVWmlykg-sW~EE-MiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLk--g~ 157 (1189)
T KOG2041|consen 84 Q-KLTTSDTSGLIIVWMLYKG-SWCEE-MINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELK--GQ 157 (1189)
T ss_pred c-cccccCCCceEEEEeeecc-cHHHH-HhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcc--hh
Confidence 8 9999999999999998764 33321 11233567899999999998 899999999998877765431111111 22
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC---CceEE----EeecCCCCeEEEEEeC-------CCCCEEEEEe
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---DSVVA----HFEYHKHPVTSIEWSP-------HEGSTLAVSS 391 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---~~~~~----~~~~h~~~I~~v~~sp-------~~~~~las~s 391 (479)
....+.|+++. ..++.+-..|.+.+||....-.. ..+.. .+......|..+.|.. -+...|+.+-
T Consensus 158 ~l~hv~ws~D~-~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy 236 (1189)
T KOG2041|consen 158 LLAHVLWSEDL-EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCY 236 (1189)
T ss_pred eccceeecccH-HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEE
Confidence 34578999998 77777888899999997532110 01111 1222233477777752 1336899999
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
..|.+.|-.-.+.. .......| ..|..+.|+++|. +++.+|.+
T Consensus 237 ~nGr~QiMR~eND~------------------------~Pvv~dtg-m~~vgakWnh~G~-vLAvcG~~ 279 (1189)
T KOG2041|consen 237 ANGRMQIMRSENDP------------------------EPVVVDTG-MKIVGAKWNHNGA-VLAVCGND 279 (1189)
T ss_pred cCceehhhhhcCCC------------------------CCeEEecc-cEeecceecCCCc-EEEEccCc
Confidence 99988874332221 22233333 5799999999996 66666655
No 262
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.11 E-value=3.7e-08 Score=95.56 Aligned_cols=202 Identities=19% Similarity=0.352 Sum_probs=136.3
Q ss_pred cCCcceeEEEEecCC-CcEEEE-----EeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 167 AHQGCVNRIRAMSQN-PHICAS-----WADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~-~~~lat-----~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
-|...|+.+.++|-+ +..+|+ ++.-+.|+||.+...... ......+| ....--.+.
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~----------------~~~a~ksF--Fkadkvqm~ 224 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH----------------QPVANKSF--FKADKVQMK 224 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEecccccccc----------------chhhhccc--cccceeEEE
Confidence 356789999999973 455554 355678999998731100 01111222 122334688
Q ss_pred eCCCCCCeEEEEe--CCC---------eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE--eCCCcEEE
Q 039302 241 WNPVAPGRLVSGD--CNS---------CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC--SVDGNIAI 307 (479)
Q Consensus 241 ~s~~~~~~l~sg~--~dg---------~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~--s~dg~I~i 307 (479)
|++.+.++|+.++ -|. ++++.+++. ....+ .+ ...++|.+++|+|+++ -|+++ -.-.++.|
T Consensus 225 WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~s~~V---~L-~k~GPVhdv~W~~s~~-EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 225 WNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-ESVSV---PL-LKEGPVHDVTWSPSGR-EFAVVYGFMPAKVTI 298 (566)
T ss_pred eccCCceEEEEEEEeecCCCccccccceEEEEEecC-ceEEE---ec-CCCCCceEEEECCCCC-EEEEEEecccceEEE
Confidence 9998887555443 332 677777762 22221 11 2368999999999998 55554 45678999
Q ss_pred EEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 308 WDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 308 wD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
||++.. ++..+ ..++-|++-|+|.| ++|+.+|-+ |.+-|||+.+.+ .+..+..- .-+-++|+|++
T Consensus 299 fnlr~~--~v~df--~egpRN~~~fnp~g-~ii~lAGFGNL~G~mEvwDv~n~K----~i~~~~a~--~tt~~eW~PdG- 366 (566)
T KOG2315|consen 299 FNLRGK--PVFDF--PEGPRNTAFFNPHG-NIILLAGFGNLPGDMEVWDVPNRK----LIAKFKAA--NTTVFEWSPDG- 366 (566)
T ss_pred EcCCCC--EeEeC--CCCCccceEECCCC-CEEEEeecCCCCCceEEEeccchh----hccccccC--CceEEEEcCCC-
Confidence 999864 44443 46677999999999 777766654 789999999976 67777753 34568999966
Q ss_pred CEEEEEeC------CCcEEEEECCCC
Q 039302 385 STLAVSSA------DNQLTIWDLSLE 404 (479)
Q Consensus 385 ~~las~s~------Dg~I~iwdl~~~ 404 (479)
.+|+|+.. |+.++||++...
T Consensus 367 e~flTATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 367 EYFLTATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred cEEEEEeccccEEecCCeEEEEecCc
Confidence 77777654 889999999754
No 263
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.09 E-value=1.7e-08 Score=98.52 Aligned_cols=187 Identities=16% Similarity=0.263 Sum_probs=142.8
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC------C-------------CCCcEEEEEeCCCcEEEE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS------P-------------TESDVFASCSVDGNIAIW 308 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s------p-------------~~~~~l~s~s~dg~I~iw 308 (479)
++|....||.+++|+...++. .....+...-++...+..|. | .+...++-|...|.|.+|
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~y 85 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLY 85 (541)
T ss_pred eEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEE
Confidence 899999999999999977543 21122333334555566552 2 133367888889999999
Q ss_pred EcCCCCceeeEE--ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCE
Q 039302 309 DTRVGKSALMSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGST 386 (479)
Q Consensus 309 D~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~ 386 (479)
++..++ ....+ ..|.+.|+++.|+.+- ..|.+++.|+.+..|+..... .++.+......+.+++.+|+ +.+
T Consensus 86 s~~~g~-it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~----~~~~~~~~~~~~~sl~is~D-~~~ 158 (541)
T KOG4547|consen 86 SVAGGE-ITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKV----IIRIWKEQKPLVSSLCISPD-GKI 158 (541)
T ss_pred EecCCe-EEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccce----eeeeeccCCCccceEEEcCC-CCE
Confidence 999886 33333 5799999999999887 789999999999999999887 78888888999999999997 488
Q ss_pred EEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC-CeeeEEEeCC-----CCcEEEEEcCC
Q 039302 387 LAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK-DLKELHWHTQ-----VPGMIVSTAAD 460 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~-~V~~v~w~p~-----~~~ll~s~~~d 460 (479)
|++++ ++|++||+... +++....||. .|+++.|-.. |.++|.+....
T Consensus 159 l~~as--~~ik~~~~~~k-------------------------evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~ 211 (541)
T KOG4547|consen 159 LLTAS--RQIKVLDIETK-------------------------EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAE 211 (541)
T ss_pred EEecc--ceEEEEEccCc-------------------------eEEEEecCCCcceEEEEEEEeccccccceeeeccccc
Confidence 88876 58999999987 3444445554 6999999877 55666666555
Q ss_pred C-ceEEeeec
Q 039302 461 G-FNILMPSN 469 (479)
Q Consensus 461 g-i~iw~~~~ 469 (479)
. +.+|....
T Consensus 212 r~i~~w~v~~ 221 (541)
T KOG4547|consen 212 RGITVWVVEK 221 (541)
T ss_pred cceeEEEEEc
Confidence 4 89998866
No 264
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.07 E-value=5.2e-07 Score=88.19 Aligned_cols=220 Identities=12% Similarity=0.147 Sum_probs=137.7
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe--------cCCCCceEEE
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF--------GGHKDEGYAI 239 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l 239 (479)
.......++++|++..++++...+|.|.++++.......... .+..+ ..-.....++
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~---------------~~~~~~g~g~~~~rq~~~h~H~v 149 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV---------------QTVRHEGSGPNPDRQEGPHPHQV 149 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE---------------EEEESEEEESSTTTTSSTCEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee---------------eecccCCCCCcccccccccceeE
Confidence 344556799999997777776679999999998742111000 00000 0112367899
Q ss_pred EeCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCC-cccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--
Q 039302 240 DWNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNP-FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-- 315 (479)
Q Consensus 240 ~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~-~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-- 315 (479)
.|+|+++ +|++.+ ....|.+|++............ .......-+.+.|+|+++.+++++-.+++|.++++.....
T Consensus 150 ~~~pdg~-~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~ 228 (345)
T PF10282_consen 150 VFSPDGR-FVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSL 228 (345)
T ss_dssp EE-TTSS-EEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred EECCCCC-EEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCce
Confidence 9999998 666654 3458999999765421100011 1123456789999999997777888899999999983221
Q ss_pred -eeeEEec------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 316 -ALMSFKA------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 316 -~~~~~~~------h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
.+..+.. .......|.++|++..++++....+.|.+|++.........+..+.......+.+.++|++ .+|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g-~~l~ 307 (345)
T PF10282_consen 229 TEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG-RYLY 307 (345)
T ss_dssp EEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-SEEE
T ss_pred eEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC-CEEE
Confidence 1222211 1125788999999966666676788999999953321122444455445568999999976 6665
Q ss_pred EEe-CCCcEEEEECCCC
Q 039302 389 VSS-ADNQLTIWDLSLE 404 (479)
Q Consensus 389 s~s-~Dg~I~iwdl~~~ 404 (479)
++. .++.|.+|++...
T Consensus 308 Va~~~s~~v~vf~~d~~ 324 (345)
T PF10282_consen 308 VANQDSNTVSVFDIDPD 324 (345)
T ss_dssp EEETTTTEEEEEEEETT
T ss_pred EEecCCCeEEEEEEeCC
Confidence 555 6789999988543
No 265
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.06 E-value=6e-08 Score=94.93 Aligned_cols=191 Identities=12% Similarity=0.111 Sum_probs=128.3
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEec
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEP 263 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~ 263 (479)
++++-..+|.|.|.|..+ .+.+.++......-..+.++|++. ++++++.||.|.++|+
T Consensus 8 ~~V~~~~~~~v~viD~~t---------------------~~~~~~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~ 65 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGAT---------------------NKVVARIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDL 65 (369)
T ss_dssp EEEEEGGGTEEEEEETTT----------------------SEEEEEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEET
T ss_pred EEEEecCCCEEEEEECCC---------------------CeEEEEEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEEC
Confidence 445667789999999987 567777765544444578999998 8888899999999999
Q ss_pred CCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec-------CCCCEEEEEEcCCC
Q 039302 264 ASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA-------HNADVNVISWNRLA 336 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~-------h~~~v~~l~~~p~~ 336 (479)
.+.+... .+.. .....+++++++|+.+++++...+.+.++|.++.+ ++..+.. ....+..|..+|..
T Consensus 66 ~~~~~v~----~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle-~v~~I~~~~~~~~~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 66 ATGKVVA----TIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLE-PVKTIPTGGMPVDGPESRVAAIVASPGR 139 (369)
T ss_dssp TSSSEEE----EEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-SSS
T ss_pred CcccEEE----EEec-CCCcceEEEcCCCCEEEEEecCCCceeEecccccc-ceeecccccccccccCCCceeEEecCCC
Confidence 8865422 2222 34568899999999666667789999999999985 5555532 23467788888888
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 337 ~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..++++--+.+.|.+.|...... +......-........|+|++..++++....+.|-++|+...+
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~---~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k 205 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKN---LKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK 205 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSC---EEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred CEEEEEEccCCeEEEEEeccccc---cceeeecccccccccccCcccceeeecccccceeEEEeeccce
Confidence 45666666668999999887753 3333443456778899999764445555667889999987653
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=7.6e-08 Score=93.45 Aligned_cols=234 Identities=15% Similarity=0.240 Sum_probs=152.5
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC-eEEE
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG-RLVS 251 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~-~l~s 251 (479)
++..|+.+. .+.| --..+.|++|++... ......+ |...|..+.++|.... .+|+
T Consensus 129 W~~qfs~dE-sl~a-rlv~nev~f~~~~~f--------------------~~~~~kl--~~~~i~~f~lSpgp~~~~vAv 184 (566)
T KOG2315|consen 129 WVPQFSIDE-SLAA-RLVSNEVQFYDLGSF--------------------KTIQHKL--SVSGITMLSLSPGPEPPFVAV 184 (566)
T ss_pred cccccccch-hhhh-hhhcceEEEEecCCc--------------------cceeeee--eccceeeEEecCCCCCceEEE
Confidence 688999887 3333 345578999999871 2233333 5678899999997433 4443
Q ss_pred -----EeCCCeEEEEecCCCCccc-cCCCCcccCCCcEEEEEECCCCCcEEEEEeC--CC---------cEEEEEcCCCC
Q 039302 252 -----GDCNSCIHLWEPASDATWN-VDPNPFIGHAASVEDLQWSPTESDVFASCSV--DG---------NIAIWDTRVGK 314 (479)
Q Consensus 252 -----g~~dg~I~lwd~~~~~~~~-~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--dg---------~I~iwD~~~~~ 314 (479)
++.=+.++||......... +..+.|. ...=-.+.|++-+..+|+.++. |+ ++++.++.. .
T Consensus 185 yvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF--kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g-~ 261 (566)
T KOG2315|consen 185 YVPEKKGAPASVRIYKYPEEGQHQPVANKSFF--KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQG-E 261 (566)
T ss_pred EccCCCCCCcEEEEeccccccccchhhhcccc--ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecC-c
Confidence 3455689999886332211 1112222 1222357899888766655543 43 588888883 3
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEE-EEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC-
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLL-ASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA- 392 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l-~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~- 392 (479)
.+...+ ...++|.++.|+|.+..+- +-|-.=..+.|||+|.. ++..|. .++=+++-|+|++ ++|+.+|-
T Consensus 262 s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~df~--egpRN~~~fnp~g-~ii~lAGFG 332 (566)
T KOG2315|consen 262 SVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFDFP--EGPRNTAFFNPHG-NIILLAGFG 332 (566)
T ss_pred eEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEeCC--CCCccceEECCCC-CEEEEeecC
Confidence 233333 3478999999999983332 33556678999999843 555554 6788999999977 77777765
Q ss_pred --CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC------CCceE
Q 039302 393 --DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA------DGFNI 464 (479)
Q Consensus 393 --Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~------dgi~i 464 (479)
-|.|-|||....+.. .... -..-+-+.|+|+|.+++.++.. +|++|
T Consensus 333 NL~G~mEvwDv~n~K~i------------------------~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Ki 386 (566)
T KOG2315|consen 333 NLPGDMEVWDVPNRKLI------------------------AKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKI 386 (566)
T ss_pred CCCCceEEEeccchhhc------------------------cccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeEE
Confidence 478999999885421 1111 1245668999999987766654 56899
Q ss_pred Eeee
Q 039302 465 LMPS 468 (479)
Q Consensus 465 w~~~ 468 (479)
|+..
T Consensus 387 whyt 390 (566)
T KOG2315|consen 387 WHYT 390 (566)
T ss_pred EEec
Confidence 9874
No 267
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.03 E-value=1.5e-10 Score=113.35 Aligned_cols=211 Identities=18% Similarity=0.278 Sum_probs=147.9
Q ss_pred CcceeEEEEecCC-CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQN-PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
...+.|+++.-.. ..+++.|..+|.|.+-.+.... ........+|...+++++|++...+
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~h-------------------dSs~E~tp~~ar~Ct~lAwneLDtn 116 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPH-------------------DSSAEVTPGYARPCTSLAWNELDTN 116 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcc-------------------cccceecccccccccccccccccHH
Confidence 3456677766655 3799999999999998887621 1122345577889999999998776
Q ss_pred eEEEEe----CCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 248 RLVSGD----CNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 248 ~l~sg~----~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.||.|- .|..+.|||+.+.-........|.+ ......+++|..+.+ ++.+|...+.++++|+|........+
T Consensus 117 ~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~~sv-- 193 (783)
T KOG1008|consen 117 HLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSVSSV-- 193 (783)
T ss_pred HHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhhhhh--
Confidence 788873 4668999999875221111111222 344567899997777 89999999999999999653222222
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEe-CCCCCCCCceEEEeecCCC----CeEEEEEeCCCCCEEEEEeCC-CcE
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHD-LRLLKGGDSVVAHFEYHKH----PVTSIEWSPHEGSTLAVSSAD-NQL 396 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD-lr~~~~~~~~~~~~~~h~~----~I~~v~~sp~~~~~las~s~D-g~I 396 (479)
....+..+...|....++++-. ||.|.+|| .++.+. ++..+...+. .+..++|+|....++++.+.| ++|
T Consensus 194 nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien---pl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tI 269 (783)
T KOG1008|consen 194 NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN---PLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITI 269 (783)
T ss_pred hhhhcccceecCCCCCceeccc-cCceeeccchhhhcc---HHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceE
Confidence 2334566777776657887765 99999999 776664 4444443333 389999999887888888876 589
Q ss_pred EEEECCCCC
Q 039302 397 TIWDLSLEK 405 (479)
Q Consensus 397 ~iwdl~~~~ 405 (479)
+++|+....
T Consensus 270 rlydi~~v~ 278 (783)
T KOG1008|consen 270 RLYDICVVG 278 (783)
T ss_pred EEecccccC
Confidence 999998654
No 268
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.02 E-value=4.2e-09 Score=92.68 Aligned_cols=164 Identities=15% Similarity=0.167 Sum_probs=108.6
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.|++.-.+-..+--+ +-++++..||.+.+++......... ..+.. |.+ -.+......++
T Consensus 87 ~~sep~p~~~~s~~~-t~V~~~~~dg~~~v~s~~~~~~~~~---------------~i~~~----~~~-~as~~~~~~~~ 145 (319)
T KOG4714|consen 87 KNSEIDPNDACTMTD-NRVCIGYADGSLAVFSTDKDLALMS---------------RIPSI----HSG-SASRKICRHGN 145 (319)
T ss_pred ccCCCCCcccccccC-CceEecCCCceEEEEechHHHhhhh---------------hcccc----ccc-ccccceeeccc
Confidence 555443333333333 4678999999999999877221111 01111 111 11112222222
Q ss_pred CeEEEEe-----CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 247 GRLVSGD-----CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 247 ~~l~sg~-----~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
.+.++. .-+..+.|+++..+........ ...|.+++-+|...+++++|+.||.+-+||.|....+...+.
T Consensus 146 -~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~----~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ 220 (319)
T KOG4714|consen 146 -SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKA----LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLK 220 (319)
T ss_pred -EEecCCcceEeeccceeeecccccccccccccc----cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHH
Confidence 333322 2345567776554332221111 234999999999998999999999999999999876777889
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
+|...++-+-|+|..+..|++++.||.+..||..+
T Consensus 221 ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 221 AHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred HhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 99999999999999999999999999999999873
No 269
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.02 E-value=2.5e-06 Score=79.14 Aligned_cols=263 Identities=11% Similarity=0.122 Sum_probs=164.3
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
.++..+.+.++-|.|+|++..+.+.... .|.|-.|.+......+ ..+........+-.-++
T Consensus 33 ~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-----------------t~ln~~~~~g~~p~yvs 95 (346)
T COG2706 33 LQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-----------------TFLNRQTLPGSPPCYVS 95 (346)
T ss_pred hhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-----------------EEeeccccCCCCCeEEE
Confidence 3566778889999999998555544444 6888888887621111 11111111122336799
Q ss_pred eCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCc----------EEEEEECCCCCcEEEEEe-CCCcEEEE
Q 039302 241 WNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAAS----------VEDLQWSPTESDVFASCS-VDGNIAIW 308 (479)
Q Consensus 241 ~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~----------V~~l~~sp~~~~~l~s~s-~dg~I~iw 308 (479)
+++++. +|+++. ..|.|.++-++..+.... ......|.++ +....+.|+++ +++++. .--.|.+|
T Consensus 96 vd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~-~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y 172 (346)
T COG2706 96 VDEDGR-FVFVANYHSGSVSVYPLQADGSLQP-VVQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLY 172 (346)
T ss_pred ECCCCC-EEEEEEccCceEEEEEcccCCcccc-ceeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEE
Confidence 999998 666654 467999999977544221 1123334444 88999999999 555554 34469999
Q ss_pred EcCCCCceee--EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---------CCCCeEEE
Q 039302 309 DTRVGKSALM--SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---------HKHPVTSI 377 (479)
Q Consensus 309 D~~~~~~~~~--~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---------h~~~I~~v 377 (479)
++..++.... ....-...-..|.|+|++....+..--+++|.+|....... .+..+.. -..+...|
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g---~~~~lQ~i~tlP~dF~g~~~~aaI 249 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVG---KFEELQTIDTLPEDFTGTNWAAAI 249 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCc---eEEEeeeeccCccccCCCCceeEE
Confidence 9997642111 11234456789999999955556666789999999887532 2222222 13456789
Q ss_pred EEeCCCCCEEEEEeC-CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEE
Q 039302 378 EWSPHEGSTLAVSSA-DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIV 455 (479)
Q Consensus 378 ~~sp~~~~~las~s~-Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~ 455 (479)
..+|++ ++|.++.. ...|.+|.+..... ...++....-+ ...+++.++|.+..|+|
T Consensus 250 his~dG-rFLYasNRg~dsI~~f~V~~~~g---------------------~L~~~~~~~teg~~PR~F~i~~~g~~Lia 307 (346)
T COG2706 250 HISPDG-RFLYASNRGHDSIAVFSVDPDGG---------------------KLELVGITPTEGQFPRDFNINPSGRFLIA 307 (346)
T ss_pred EECCCC-CEEEEecCCCCeEEEEEEcCCCC---------------------EEEEEEEeccCCcCCccceeCCCCCEEEE
Confidence 999965 77766654 55788888765421 01222222222 24889999999975554
Q ss_pred EEcCCC-ceEEeeecc
Q 039302 456 STAADG-FNILMPSNI 470 (479)
Q Consensus 456 s~~~dg-i~iw~~~~~ 470 (479)
+.-++. |.+|....-
T Consensus 308 a~q~sd~i~vf~~d~~ 323 (346)
T COG2706 308 ANQKSDNITVFERDKE 323 (346)
T ss_pred EccCCCcEEEEEEcCC
Confidence 444333 888877554
No 270
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=8.7e-10 Score=106.12 Aligned_cols=213 Identities=19% Similarity=0.291 Sum_probs=146.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|+..|..+....+. +-+++++.|.+|++|.+....... ....+..+++.|+.+|..+.|-
T Consensus 729 ~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~--------------~tsaCQfTY~aHkk~i~~igfL 793 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEI--------------GTSACQFTYQAHKKPIHDIGFL 793 (1034)
T ss_pred ecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCcc--------------ccceeeeEhhhccCcccceeee
Confidence 4578999999998877665 566788999999999998743222 1345778999999999999998
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC-CCc-EEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT-ESD-VFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-~~~-~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
.+.. .+++ +||.|++||.--+..... .......+.+..+..-++ .+. +++.|+...+|+++|.|...- ...+
T Consensus 794 ~~lr-~i~S--cD~giHlWDPFigr~Laq--~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~-~~E~ 867 (1034)
T KOG4190|consen 794 ADLR-SIAS--CDGGIHLWDPFIGRLLAQ--MEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEW-TCEL 867 (1034)
T ss_pred eccc-eeee--ccCcceeecccccchhHh--hhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccc-eeeE
Confidence 8765 5554 579999999865433210 011111223333333333 332 445558899999999998742 2222
Q ss_pred -----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 321 -----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 321 -----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
.+.+.-+.+++..+.| +.+|+|-.+|+|.+.|.|+++ .+...+.-......++ .|.+ ..|+....|.+
T Consensus 868 kVcna~~Pna~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~----vINswrpmecdllqla-apsd-q~L~~saldHs 940 (1034)
T KOG4190|consen 868 KVCNAPGPNALTRAIAVADKG-NKLAAALSNGCIAILDARNGK----VINSWRPMECDLLQLA-APSD-QALAQSALDHS 940 (1034)
T ss_pred EeccCCCCchheeEEEeccCc-chhhHHhcCCcEEEEecCCCc----eeccCCcccchhhhhc-Cchh-HHHHhhcccce
Confidence 3345668899999999 899999999999999999998 5665554333333333 2433 67777777888
Q ss_pred EEE-EECCC
Q 039302 396 LTI-WDLSL 403 (479)
Q Consensus 396 I~i-wdl~~ 403 (479)
+.+ |-...
T Consensus 941 laVnWhald 949 (1034)
T KOG4190|consen 941 LAVNWHALD 949 (1034)
T ss_pred eEeeehhcC
Confidence 877 75443
No 271
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.98 E-value=8.6e-09 Score=92.88 Aligned_cols=225 Identities=18% Similarity=0.234 Sum_probs=149.9
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc-ccCCCCcccCC------------CcEEEEEEC-CCCCcEEEE
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW-NVDPNPFIGHA------------ASVEDLQWS-PTESDVFAS 298 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~-~~~~~~~~~h~------------~~V~~l~~s-p~~~~~l~s 298 (479)
...|+++.|...|. +|++|+..|+|.+|.-.....+ ..-...|++|. ..|+.|.|. +.+.+.|+.
T Consensus 26 ad~ItaVefd~tg~-YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDETGL-YLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccccc-eEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45789999999997 9999999999999976543311 11112355553 347778875 556678888
Q ss_pred EeCCCcEEEEEcCCCC------------------c-----------------------eeeEE-ecCCCCEEEEEEcCCC
Q 039302 299 CSVDGNIAIWDTRVGK------------------S-----------------------ALMSF-KAHNADVNVISWNRLA 336 (479)
Q Consensus 299 ~s~dg~I~iwD~~~~~------------------~-----------------------~~~~~-~~h~~~v~~l~~~p~~ 336 (479)
.+.|++|++|.++... . +...+ .+|..-|++++|+.+.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 9999999999886531 0 00111 4677789999999988
Q ss_pred CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-----CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHH
Q 039302 337 SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-----HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEA 411 (479)
Q Consensus 337 ~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-----~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~ 411 (479)
..+++ ++|-.|.+|.+.-... .-.+..++.|. .-|++..|+|..-++|.-++..|.|++-|++...-.....
T Consensus 185 -et~lS-aDdLrINLWnl~i~D~-sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 -ETLLS-ADDLRINLWNLEIIDG-SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred -heeee-ccceeeeeccccccCC-ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 45554 4678999999886653 11233445554 4589999999877889999999999999998432100000
Q ss_pred HHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 412 EFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 412 ~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
.+ .... .-+...-|...--..|.++.|++++. +|++-..-.++||+...-
T Consensus 262 kl------fe~~--~D~v~~~ff~eivsSISD~kFs~ngr-yIlsRdyltvkiwDvnm~ 311 (460)
T COG5170 262 KL------FELT--IDGVDVDFFEEIVSSISDFKFSDNGR-YILSRDYLTVKIWDVNMA 311 (460)
T ss_pred hh------hhhc--cCcccchhHHHHhhhhcceEEcCCCc-EEEEeccceEEEEecccc
Confidence 00 0000 00011111112224699999999995 888888888999988654
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.97 E-value=7.8e-07 Score=98.39 Aligned_cols=271 Identities=13% Similarity=0.121 Sum_probs=155.4
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEE
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSG 252 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg 252 (479)
..+++.+.+..++++-+.++.|++||........ .......+ ...+. .. .++-..-..|++.+++. .|+.+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~--ig~~g~~G---~~dG~-~~--~a~f~~P~GIavd~~gn-~LYVa 641 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQ--IGSTGEEG---LRDGS-FE--DATFNRPQGLAYNAKKN-LLYVA 641 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEE--EccCCCcC---CCCCc-hh--ccccCCCcEEEEeCCCC-EEEEE
Confidence 4568887655788888889999999986532100 00000000 00000 00 01112357889998876 66555
Q ss_pred e-CCCeEEEEecCCCCccccCC-----CCcccC-------CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 253 D-CNSCIHLWEPASDATWNVDP-----NPFIGH-------AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 253 ~-~dg~I~lwd~~~~~~~~~~~-----~~~~~h-------~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+ ..+.|+++|+.++....+.. ..+.+. -....+++|+|++..++++.+.++.|++||..++. +..
T Consensus 642 Dt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~--v~~ 719 (1057)
T PLN02919 642 DTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV--TRV 719 (1057)
T ss_pred eCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe--EEE
Confidence 5 45689999986542211100 001110 11346899999655588888889999999998763 222
Q ss_pred EecC---------------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE-----------EEeecC---
Q 039302 320 FKAH---------------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVV-----------AHFEYH--- 370 (479)
Q Consensus 320 ~~~h---------------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~-----------~~~~~h--- 370 (479)
+.+. -...+.|+|+|++..++++-+.++.|++||+.++.. ..+ ..+..+
T Consensus 720 ~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~--~~~~gg~~~~~~~l~~fG~~dG~ 797 (1057)
T PLN02919 720 FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS--RLLAGGDPTFSDNLFKFGDHDGV 797 (1057)
T ss_pred EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE--EEEEecccccCcccccccCCCCc
Confidence 2111 123467999999855788888889999999986541 000 011000
Q ss_pred -----CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEE
Q 039302 371 -----KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELH 445 (479)
Q Consensus 371 -----~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~ 445 (479)
-.....+++++++ .++++-+.+++|++||........ +.+. ......+... . ...-.....++
T Consensus 798 g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~v~t----iaG~---G~~G~~dG~~--~--~a~l~~P~GIa 865 (1057)
T PLN02919 798 GSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKRVTT----LAGT---GKAGFKDGKA--L--KAQLSEPAGLA 865 (1057)
T ss_pred hhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCeEEE----Eecc---CCcCCCCCcc--c--ccccCCceEEE
Confidence 1123588999965 788888899999999997653110 0000 0000000000 0 00012478899
Q ss_pred EeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 446 WHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 446 w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+++++. ++++...++ |++|++..
T Consensus 866 vd~dG~-lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 866 LGENGR-LFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EeCCCC-EEEEECCCCEEEEEECCC
Confidence 999996 666665555 89998754
No 273
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.95 E-value=3.1e-09 Score=97.04 Aligned_cols=159 Identities=18% Similarity=0.224 Sum_probs=121.2
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK- 314 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~- 314 (479)
.+.++|+-.-.++-++.+.+..|.+-++.++-. +.|. .++.|.+++|.-.++ ++..|..+|.|..+|+|...
T Consensus 214 a~~CawSlni~gyhfs~G~sqqv~L~nvetg~~-----qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 214 AWSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQ-----QSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred chhhhhhhccceeeecccccceeEEEEeecccc-----cccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeeccc
Confidence 344588865555556666688999999988643 3344 567899999998887 99999999999999999872
Q ss_pred ---ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE--eCCCCCEEEE
Q 039302 315 ---SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW--SPHEGSTLAV 389 (479)
Q Consensus 315 ---~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~--sp~~~~~las 389 (479)
.+... .-|...|+++..-.....+|++.+.+|.|++||+|..+. ..-+..+.+|...-.-+-+ ++ ....+++
T Consensus 287 G~~~~a~r-lyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~-~~~V~qYeGHvN~~a~l~~~v~~-eeg~I~s 363 (425)
T KOG2695|consen 287 GNGWCAQR-LYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKC-KKSVMQYEGHVNLSAYLPAHVKE-EEGSIFS 363 (425)
T ss_pred CCCcceEE-EEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhc-ccceeeeeccccccccccccccc-ccceEEE
Confidence 24433 348899999988775558899999999999999998873 2248889998765444433 44 3467888
Q ss_pred EeCCCcEEEEECCCC
Q 039302 390 SSADNQLTIWDLSLE 404 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~ 404 (479)
++.|...+||.++.+
T Consensus 364 ~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 364 VGDDCYTRIWSLDSG 378 (425)
T ss_pred ccCeeEEEEEecccC
Confidence 999999999999976
No 274
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.94 E-value=2.9e-08 Score=89.52 Aligned_cols=218 Identities=15% Similarity=0.264 Sum_probs=146.0
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC------------Cce
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK------------DEG 236 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v 236 (479)
...|+++.|...| .++|||...|.|.+|.-...... ..+....|++|. ..|
T Consensus 26 ad~ItaVefd~tg-~YlatGDkgGRVvlfer~~s~~c----------------eykf~teFQshe~EFDYLkSleieEKi 88 (460)
T COG5170 26 ADKITAVEFDETG-LYLATGDKGGRVVLFEREKSYGC----------------EYKFFTEFQSHELEFDYLKSLEIEEKI 88 (460)
T ss_pred cceeeEEEecccc-ceEeecCCCceEEEeeccccccc----------------chhhhhhhcccccchhhhhhccHHHHh
Confidence 3567888888877 79999999999999987663210 122233344443 257
Q ss_pred EEEEeCCCC-CCeEEEEeCCCeEEEEecCCCCcc--------------------------------------ccCCCCc-
Q 039302 237 YAIDWNPVA-PGRLVSGDCNSCIHLWEPASDATW--------------------------------------NVDPNPF- 276 (479)
Q Consensus 237 ~~l~~s~~~-~~~l~sg~~dg~I~lwd~~~~~~~--------------------------------------~~~~~~~- 276 (479)
.++.|...+ ...++..+.|.+|++|.+...... ..+.+.+
T Consensus 89 n~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvya 168 (460)
T COG5170 89 NAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYA 168 (460)
T ss_pred hheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecc
Confidence 888888654 346777778999999998653100 0000111
Q ss_pred ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee--eEEecCC-----CCEEEEEEcCCCCcEEEEEeCCCeE
Q 039302 277 IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL--MSFKAHN-----ADVNVISWNRLASCLLASGSDDGTF 349 (479)
Q Consensus 277 ~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~--~~~~~h~-----~~v~~l~~~p~~~~~l~sgs~dg~i 349 (479)
..|..-+++|.|+.+.. .++++ .|=.|.+|++.-...+. .-++.|. .-|++..|+|...+++.-.+..|.|
T Consensus 169 NaH~yhiNSiS~NsD~e-t~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~I 246 (460)
T COG5170 169 NAHPYHINSISFNSDKE-TLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEI 246 (460)
T ss_pred ccceeEeeeeeecCchh-eeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcE
Confidence 35777889999998876 55554 57889999987654332 2334443 3588999999987888899999999
Q ss_pred EEEeCCCCCCCCceEEE------------eecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 350 SIHDLRLLKGGDSVVAH------------FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 350 ~iwDlr~~~~~~~~~~~------------~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
++-|+|.......+... |..-...|..+.|++++ +++++-+ =.+|+|||.+..+.+
T Consensus 247 kl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ng-ryIlsRd-yltvkiwDvnm~k~p 314 (460)
T COG5170 247 KLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNG-RYILSRD-YLTVKIWDVNMAKNP 314 (460)
T ss_pred EehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCC-cEEEEec-cceEEEEecccccCC
Confidence 99999954321111111 22234578899999955 7777654 468999999987643
No 275
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.94 E-value=2e-07 Score=93.65 Aligned_cols=248 Identities=18% Similarity=0.210 Sum_probs=170.2
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC-
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP- 246 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~- 246 (479)
|...-+++.|+|.| +||-|+. ..|.+-|... .+.+..+..|...|+.+.|.|...
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s---------------------~q~iqsie~h~s~V~~VrWap~~~p 69 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRS---------------------LQLIQSIELHQSAVTSVRWAPAPSP 69 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhh---------------------hhhhhccccCccceeEEEeccCCCc
Confidence 44557889999998 8888665 4788888776 677888889999999999987431
Q ss_pred ----------CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC---CCcEEEEEeCCCcEEEEEcCCC
Q 039302 247 ----------GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT---ESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 247 ----------~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
-+||+++-.|.|.+||...... ...+..|..++.+++|-+. .+.++++-....+|.+|+..++
T Consensus 70 ~~llS~~~~~lliAsaD~~GrIil~d~~~~s~----~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG 145 (1062)
T KOG1912|consen 70 RDLLSPSSSQLLIASADISGRIILVDFVLASV----INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG 145 (1062)
T ss_pred hhccCccccceeEEeccccCcEEEEEehhhhh----hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC
Confidence 1688999999999999977543 3457778899999999663 3457888788899999999998
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---cCCC------------C-----
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---YHKH------------P----- 373 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---~h~~------------~----- 373 (479)
. .............|+.+.|.....+..-+..|.+.+-+.-....+..+.+.|. .|.. .
T Consensus 146 ~-k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~ 224 (1062)
T KOG1912|consen 146 E-KFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTP 224 (1062)
T ss_pred c-eeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCC
Confidence 6 55555555567788999998877777777788888877654443332333332 2222 0
Q ss_pred --------eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEE
Q 039302 374 --------VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELH 445 (479)
Q Consensus 374 --------I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~ 445 (479)
...++|+|+-.+.+.. .....+.|+|+..+.. +..+--....+.-+.
T Consensus 225 ~sa~fity~a~faf~p~~rn~lfi-~~prellv~dle~~~~------------------------l~vvpier~~akfv~ 279 (1062)
T KOG1912|consen 225 ASAYFITYCAQFAFSPHWRNILFI-TFPRELLVFDLEYECC------------------------LAVVPIERGGAKFVD 279 (1062)
T ss_pred cchhHHHHHHhhhcChhhhceEEE-EeccceEEEcchhhce------------------------eEEEEeccCCcceeE
Confidence 1135678866444443 3567799999987642 222211123455566
Q ss_pred EeCCCC-cEEEEEcCCC-ceEEeeec
Q 039302 446 WHTQVP-GMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 446 w~p~~~-~ll~s~~~dg-i~iw~~~~ 469 (479)
|-|+.. ..+.+...+| +.||....
T Consensus 280 vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 280 VLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccCCCcceEEEEecCCeEEEEEeec
Confidence 766542 2455555555 88887654
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=2.4e-08 Score=93.17 Aligned_cols=160 Identities=20% Similarity=0.215 Sum_probs=110.7
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.++.+..++.+ .++|.+..+....++++..... ..+++..+..- ..-+++.|..... ...
T Consensus 64 a~~~~~~s~~~-~llAv~~~~K~~~~f~~~~~~~-----------------~~kl~~~~~v~-~~~~ai~~~~~~~-sv~ 123 (390)
T KOG3914|consen 64 APALVLTSDSG-RLVAVATSSKQRAVFDYRENPK-----------------GAKLLDVSCVP-KRPTAISFIREDT-SVL 123 (390)
T ss_pred cccccccCCCc-eEEEEEeCCCceEEEEEecCCC-----------------cceeeeEeecc-cCcceeeeeeccc-eEE
Confidence 34445566666 7888888888877888766321 02233333222 2334444544444 444
Q ss_pred EEeCCC---eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE-ecCCCC
Q 039302 251 SGDCNS---CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF-KAHNAD 326 (479)
Q Consensus 251 sg~~dg---~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-~~h~~~ 326 (479)
.+..-| .+.+|....+. .....||-+.+.+++|+|+++ +++++..|..|+|-...... .+.++ .+|..-
T Consensus 124 v~dkagD~~~~di~s~~~~~-----~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f-~IesfclGH~eF 196 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADSGR-----CEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF-VIESFCLGHKEF 196 (390)
T ss_pred EEeecCCceeeeeecccccC-----cchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc-chhhhccccHhh
Confidence 444444 45555544321 366889999999999999998 99999999999998776654 33343 679999
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~ 359 (479)
|..++.-++. .|++||.|++|++||+++++.
T Consensus 197 VS~isl~~~~--~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 197 VSTISLTDNY--LLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeeeeeccCc--eeeecCCCCcEEEEecccCCc
Confidence 9999999865 689999999999999999983
No 277
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.88 E-value=4.6e-07 Score=100.19 Aligned_cols=221 Identities=12% Similarity=0.107 Sum_probs=134.5
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCccc-ccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNA-LAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
...|++.+++..++++-...+.|+++|+....-. +...+. ..... .......... -..-++++++|++...++
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~---~g~~~--~gg~~~~~~~-ln~P~gVa~dp~~g~LyV 699 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGT---KGSDY--QGGKKGTSQV-LNSPWDVCFEPVNEKVYI 699 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCc---ccCCC--CCChhhhHhh-cCCCeEEEEecCCCeEEE
Confidence 4677888877455565566678999987652110 000000 00000 0000000000 012358999995543677
Q ss_pred EEeCCCeEEEEecCCCCccccC----CCCccc------CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE-
Q 039302 251 SGDCNSCIHLWEPASDATWNVD----PNPFIG------HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS- 319 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~----~~~~~~------h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~- 319 (479)
+.+.++.|++||..++...... .....+ .-...+.|+|+|++..++++-+.++.|++||+.++...+..
T Consensus 700 ad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~g 779 (1057)
T PLN02919 700 AMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAG 779 (1057)
T ss_pred EECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEe
Confidence 7778899999998664321100 000111 11345679999998867778888899999999876421110
Q ss_pred -----------Eec--------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-----------
Q 039302 320 -----------FKA--------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----------- 369 (479)
Q Consensus 320 -----------~~~--------h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----------- 369 (479)
+-. .-.....+++++++ .++++-+.++.|++||..+.. +.++.+
T Consensus 780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG-~LYVADs~N~rIrviD~~tg~-----v~tiaG~G~~G~~dG~~ 853 (1057)
T PLN02919 780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDG-QIYVADSYNHKIKKLDPATKR-----VTTLAGTGKAGFKDGKA 853 (1057)
T ss_pred cccccCcccccccCCCCchhhhhccCCceeeEeCCC-cEEEEECCCCEEEEEECCCCe-----EEEEeccCCcCCCCCcc
Confidence 000 01123588999998 788989999999999998654 222222
Q ss_pred ---CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 370 ---HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 370 ---h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+-.....|++++++ .++++-+.+++|++||+....
T Consensus 854 ~~a~l~~P~GIavd~dG-~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 854 LKAQLSEPAGLALGENG-RLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred cccccCCceEEEEeCCC-CEEEEECCCCEEEEEECCCCc
Confidence 12246789999965 888998999999999998764
No 278
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.88 E-value=1.7e-06 Score=94.05 Aligned_cols=286 Identities=13% Similarity=0.190 Sum_probs=162.0
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcc--------cccc--cccccCCCC---------Cccc--cCCC--
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLN--------ALAE--SETVAGHGA---------PQVL--NQSP-- 225 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~--------~~~~--~~~~~~~~~---------~~~~--~~~~-- 225 (479)
.++|.+++|+|++ .+||..+.+|+|.+-...-..- .+.. +-..+.++. .... ...+
T Consensus 120 d~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 120 DSGILAASWSPDE-ELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred cCcEEEEEECCCc-CEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 5789999999999 5777777788887765432110 0000 000000000 0000 0001
Q ss_pred ----cEEecCCCCceEEEEeCCCCCCeEEEEeC---C---CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcE
Q 039302 226 ----LVKFGGHKDEGYAIDWNPVAPGRLVSGDC---N---SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDV 295 (479)
Q Consensus 226 ----~~~~~~h~~~v~~l~~s~~~~~~l~sg~~---d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 295 (479)
...+. +...-..++|-.+|. ++|+.+. . ..|+||+-. +....+ ..+. .+--.+++|.|.|+ +
T Consensus 199 ~~~d~~~~s-~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re-G~L~st-SE~v---~gLe~~l~WrPsG~-l 270 (928)
T PF04762_consen 199 PKVDEGKLS-WDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE-GELQST-SEPV---DGLEGALSWRPSGN-L 270 (928)
T ss_pred CccccCccc-cCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCC-ceEEec-cccC---CCccCCccCCCCCC-E
Confidence 11222 444567899999998 8888764 2 479999864 222111 1122 22335689999998 8
Q ss_pred EEEEeC---CCcEEEEEcCCCCceeeEE--ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC
Q 039302 296 FASCSV---DGNIAIWDTRVGKSALMSF--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH 370 (479)
Q Consensus 296 l~s~s~---dg~I~iwD~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h 370 (479)
+|+.-. ...|.+|.-+..+.--..+ ......|..+.||+++ .+||..-.|. |.+|-..+.. +..-+.+...
T Consensus 271 IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYH--WYLKqei~~~ 346 (928)
T PF04762_consen 271 IASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYH--WYLKQEIRFS 346 (928)
T ss_pred EEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCE--EEEEEEEEcc
Confidence 887654 3445566533322111112 2345679999999999 8898877655 9999988876 3233344332
Q ss_pred -CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC----CCChHH--H---HHHhhhccc-ccCCCCCCCCce-EEeecCC
Q 039302 371 -KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL----EKDEEE--E---AEFKAKTRE-QVNAPEDLPPQL-LFIHQGQ 438 (479)
Q Consensus 371 -~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~----~~~~~~--~---~~~~~~~~~-~~~~~~~~p~~l-~~~h~g~ 438 (479)
...+..+.|+|..+..|...+.+|.+.++++.- ...... . ....+..-. ..-....+||.. .+.-.-.
T Consensus 347 ~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~ 426 (928)
T PF04762_consen 347 SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELP 426 (928)
T ss_pred CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCC
Confidence 334556999998888899998888887655432 210000 0 000000000 001112344433 2333334
Q ss_pred CCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 439 KDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 439 ~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
..|.+++|++....+++-.+++.|.+|..
T Consensus 427 ~~v~~vaf~~~~~~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 427 SPVNDVAFSPSNSRFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCcEEEEEeCCCCeEEEEECCCCEEEEEe
Confidence 57999999999865566666555888874
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.88 E-value=9.3e-07 Score=96.04 Aligned_cols=251 Identities=15% Similarity=0.234 Sum_probs=151.8
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
..+.|..+.|.++.. -++.+..+|.|.+....... ....+.....-...|.|++|||+..
T Consensus 74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~------------------~~~~~E~VG~vd~GI~a~~WSPD~E- 133 (928)
T PF04762_consen 74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDP------------------DEDEIEIVGSVDSGILAASWSPDEE- 133 (928)
T ss_pred CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCC------------------CCceeEEEEEEcCcEEEEEECCCcC-
Confidence 347889999999884 44455888999998332210 0112222222345899999999998
Q ss_pred eEEEEeCCCeEEEEecC----C---------CC--c----cccCCCCccc------------------------CCCcEE
Q 039302 248 RLVSGDCNSCIHLWEPA----S---------DA--T----WNVDPNPFIG------------------------HAASVE 284 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~----~---------~~--~----~~~~~~~~~~------------------------h~~~V~ 284 (479)
.|+..+.++++.+-.-. . +. . |......|.| +...-.
T Consensus 134 lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~ 213 (928)
T PF04762_consen 134 LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRV 213 (928)
T ss_pred EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCce
Confidence 99988888888775321 0 00 0 1100011110 223446
Q ss_pred EEEECCCCCcEEEEEeC---C---CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC---CCeEEEEeCC
Q 039302 285 DLQWSPTESDVFASCSV---D---GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD---DGTFSIHDLR 355 (479)
Q Consensus 285 ~l~~sp~~~~~l~s~s~---d---g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~---dg~i~iwDlr 355 (479)
.|+|-.+|. +||+.+. . ..||||+-. +. ....-..-.+--.+++|.|.| ++||+.-. ...|.+|...
T Consensus 214 ~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvFfErN 289 (928)
T PF04762_consen 214 RISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVFFERN 289 (928)
T ss_pred EEEECCCCc-EEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEEEecC
Confidence 789999999 8888774 2 579999865 32 222222223334678999999 88888764 3457777654
Q ss_pred CCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 356 LLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 356 ~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
..+. +.....+......|..++|++++ .+||..-.|. |.+|-..+..-. + .+.+...
T Consensus 290 GLrh-geF~l~~~~~~~~v~~l~Wn~ds-~iLAv~~~~~-vqLWt~~NYHWY-------------------L-Kqei~~~ 346 (928)
T PF04762_consen 290 GLRH-GEFTLRFDPEEEKVIELAWNSDS-EILAVWLEDR-VQLWTRSNYHWY-------------------L-KQEIRFS 346 (928)
T ss_pred CcEe-eeEecCCCCCCceeeEEEECCCC-CEEEEEecCC-ceEEEeeCCEEE-------------------E-EEEEEcc
Confidence 4332 11222223456789999999965 8998877655 999998876311 0 0112211
Q ss_pred cCCCCeeeEEEeCCCCcEEEEEcC-CCceEEe
Q 039302 436 QGQKDLKELHWHTQVPGMIVSTAA-DGFNILM 466 (479)
Q Consensus 436 ~g~~~V~~v~w~p~~~~ll~s~~~-dgi~iw~ 466 (479)
. ...+..+.|||..+..|..... +.+.+++
T Consensus 347 ~-~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 347 S-SESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred C-CCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 1 2345569999988876665555 4454443
No 280
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.85 E-value=4.7e-07 Score=80.31 Aligned_cols=148 Identities=14% Similarity=0.077 Sum_probs=106.9
Q ss_pred EEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC--ceEEEEeCCCCCCeEEEEeCCCeEEEEec
Q 039302 186 ASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD--EGYAIDWNPVAPGRLVSGDCNSCIHLWEP 263 (479)
Q Consensus 186 at~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~~~~~l~sg~~dg~I~lwd~ 263 (479)
..++.|.++++.++..... + +..|.. .++.+++++++. ++++.+....|.+|.+
T Consensus 132 ~i~sndht~k~~~~~~~s~-------------------~----~~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~i 187 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSN-------------------K----FAVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAI 187 (344)
T ss_pred eeccCCcceeEEEEecCcc-------------------c----ceeeccccceeeeEEcCCCc-eEEEecCCCcceEEEe
Confidence 3457888888888876211 1 112332 388999999998 8999898999999999
Q ss_pred CCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE----ecCCCCEEEEEEcCCCCc-
Q 039302 264 ASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF----KAHNADVNVISWNRLASC- 338 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~----~~h~~~v~~l~~~p~~~~- 338 (479)
......... ......+..--+..|+.... .||+++.||++.|||+|....++... ..|.+.+..+.|++.|..
T Consensus 188 d~~sey~~~-~~~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lD 265 (344)
T KOG4532|consen 188 DDESEYIEN-IYEAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLD 265 (344)
T ss_pred CCccceeee-eEecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcce
Confidence 775543321 12222334446778998887 99999999999999999876544332 458899999999986632
Q ss_pred EEEEEeCCCeEEEEeCCCCCC
Q 039302 339 LLASGSDDGTFSIHDLRLLKG 359 (479)
Q Consensus 339 ~l~sgs~dg~i~iwDlr~~~~ 359 (479)
+|+..-.-+.+.+.|+|+...
T Consensus 266 LLf~sEhfs~~hv~D~R~~~~ 286 (344)
T KOG4532|consen 266 LLFISEHFSRVHVVDTRNYVN 286 (344)
T ss_pred EEEEecCcceEEEEEcccCce
Confidence 444445567899999999874
No 281
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.85 E-value=1.2e-06 Score=84.31 Aligned_cols=197 Identities=19% Similarity=0.255 Sum_probs=130.0
Q ss_pred CcceeEEEEecCC-CcEEEEE-----eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 169 QGCVNRIRAMSQN-PHICASW-----ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 169 ~~~V~~v~~~p~~-~~~lat~-----s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...|....|+|.+ ...||.+ +..+.++||.+.. ...+.+-.-....-..|.|+
T Consensus 173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~---------------------~s~l~tk~lfk~~~~qLkW~ 231 (561)
T COG5354 173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPK---------------------NSVLVTKNLFKVSGVQLKWQ 231 (561)
T ss_pred ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccC---------------------CCeeeeeeeEeecccEEEEe
Confidence 3567777888863 2334544 5678899999985 23333322223345678999
Q ss_pred CCCCCeEEE-Ee----------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe--CCCcEEEEE
Q 039302 243 PVAPGRLVS-GD----------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS--VDGNIAIWD 309 (479)
Q Consensus 243 ~~~~~~l~s-g~----------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~dg~I~iwD 309 (479)
+.+. +|+. .. ...+++|+++..... . ....-.++|.+.+|.|.+. .|++++ ....+.++|
T Consensus 232 ~~g~-~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~----V~~~~~~pVhdf~W~p~S~-~F~vi~g~~pa~~s~~~ 304 (561)
T COG5354 232 VLGK-YLLVLVMTHTKSNKSYFGESNLYLLRITERSI-P----VEKDLKDPVHDFTWEPLSS-RFAVISGYMPASVSVFD 304 (561)
T ss_pred cCCc-eEEEEEEEeeecccceeccceEEEEeeccccc-c----eeccccccceeeeecccCC-ceeEEecccccceeecc
Confidence 9987 4432 11 124678888864322 1 1124578999999999988 566554 788999999
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGST 386 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~ 386 (479)
++.. . .+......=+.+.|+|.+ ++++.++-+ |.|-+||...... .+..+.+- ..+-+.|+|++ .+
T Consensus 305 lr~N--l--~~~~Pe~~rNT~~fsp~~-r~il~agF~nl~gni~i~~~~~rf~---~~~~~~~~--n~s~~~wspd~-qF 373 (561)
T COG5354 305 LRGN--L--RFYFPEQKRNTIFFSPHE-RYILFAGFDNLQGNIEIFDPAGRFK---VAGAFNGL--NTSYCDWSPDG-QF 373 (561)
T ss_pred cccc--e--EEecCCcccccccccCcc-cEEEEecCCccccceEEeccCCceE---EEEEeecC--CceEeeccCCc-eE
Confidence 9975 2 333445566889999999 777766554 6899999876552 34356543 34557899965 66
Q ss_pred EEEEe------CCCcEEEEECCCC
Q 039302 387 LAVSS------ADNQLTIWDLSLE 404 (479)
Q Consensus 387 las~s------~Dg~I~iwdl~~~ 404 (479)
+.+.. .|+.|+|||+...
T Consensus 374 ~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 374 YDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred EEecCCCcccccCcceEEEEecCc
Confidence 65553 3889999999765
No 282
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=2.2e-06 Score=83.31 Aligned_cols=239 Identities=16% Similarity=0.254 Sum_probs=141.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeC-----------CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWAD-----------TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG 231 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~-----------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (479)
.+.+.|++ |.-+.|+|.. ++|+|.+. ...+.|||+.+ +.....|..
T Consensus 244 ~~RF~Hp~-Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l~IWDI~t---------------------G~lkrsF~~ 300 (698)
T KOG2314|consen 244 IQRFYHPG-VQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQLIIWDIAT---------------------GLLKRSFPV 300 (698)
T ss_pred HHhccCCC-ceeeecCCcc-ceEEEecCCccccCcccCCCceEEEEEccc---------------------cchhcceec
Confidence 46677875 8889999988 77878763 25789999988 333344433
Q ss_pred ---CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-------
Q 039302 232 ---HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV------- 301 (479)
Q Consensus 232 ---h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------- 301 (479)
....-.-..||.++. ++|--.. ..|.|++...... +..+.+ .-..|.+..|+|.+. +||-=+.
T Consensus 301 ~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~l--ld~Ksl--ki~gIr~FswsP~~~-llAYwtpe~~~~pa 373 (698)
T KOG2314|consen 301 IKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFML--LDKKSL--KISGIRDFSWSPTSN-LLAYWTPETNNIPA 373 (698)
T ss_pred cCCCccccceEEeccCCc-eeEEecc-ceEEEEecCceee--eccccc--CCccccCcccCCCcc-eEEEEcccccCCcc
Confidence 122223468999987 7776654 5888888654221 111111 123455566666554 4432110
Q ss_pred --------------------------------------------------CCcEEEEEcCCCCceeeEEecCCCCEEEEE
Q 039302 302 --------------------------------------------------DGNIAIWDTRVGKSALMSFKAHNADVNVIS 331 (479)
Q Consensus 302 --------------------------------------------------dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~ 331 (479)
=..+.|+.+|....++..+. -...|...+
T Consensus 374 rvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~Fa 452 (698)
T KOG2314|consen 374 RVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFA 452 (698)
T ss_pred eEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeee
Confidence 00122333332222222221 234577889
Q ss_pred EcCCCCcEEEEEeCC--CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE---eCCCcEEEEECCCCCC
Q 039302 332 WNRLASCLLASGSDD--GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS---SADNQLTIWDLSLEKD 406 (479)
Q Consensus 332 ~~p~~~~~l~sgs~d--g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~---s~Dg~I~iwdl~~~~~ 406 (479)
|-|.|..+.+..+.+ .++.+|-+.+.......+..+. ....+.|.|+|.+ .+++.+ |..|.+.++|+....
T Consensus 453 WEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~- 528 (698)
T KOG2314|consen 453 WEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYAD- 528 (698)
T ss_pred eccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCC-cEEEEEEecccccceEEEecchhh-
Confidence 999995554444443 4788998885333234555554 3567899999977 665554 457899999998632
Q ss_pred hHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 407 EEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
.....+..|...+.+.|.|.|.+++.+.+.
T Consensus 529 -----------------------~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 529 -----------------------LKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred -----------------------hhhccCccccccccceECCCCCEEEEeeeh
Confidence 112233344568889999999866665553
No 283
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.2e-07 Score=93.96 Aligned_cols=195 Identities=13% Similarity=0.209 Sum_probs=132.6
Q ss_pred CceeEEEEec-------CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec
Q 039302 158 TPILQLRKVA-------HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG 230 (479)
Q Consensus 158 ~p~~~~~~~~-------H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (479)
.|++....+. ....+.|++++. .++|-|+.+|.|++++.+. .+ .+..
T Consensus 21 ePklkY~Ri~n~~~~~~~~D~is~~av~~---~~~~~GtH~g~v~~~~~~~----------------------~~-~~~~ 74 (846)
T KOG2066|consen 21 EPKLKYERISNLVKNFLQNDAISCCAVHD---KFFALGTHRGAVYLTTCQG----------------------NP-KTNF 74 (846)
T ss_pred CccceehhhhcccHHHHhhhHHHHHHhhc---ceeeeccccceEEEEecCC----------------------cc-cccc
Confidence 6666654443 245677777764 6899999999999999876 22 2233
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC----CCcEEEEEeCCCcEE
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT----ESDVFASCSVDGNIA 306 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~~l~s~s~dg~I~ 306 (479)
.|+.. ...|. +++||+.||+|.|-.+-+..... ......++.+|+++|+ ....|++|+.-| +.
T Consensus 75 ~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~~-----~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lv 141 (846)
T KOG2066|consen 75 DHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEIT-----QYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LV 141 (846)
T ss_pred ccccc------ccCCc-eEEEecCCCcEEEeeccCCccce-----eEecCCcceeEEeccchhhhhhhheeecCcce-EE
Confidence 45433 55666 99999999999999887754421 2233568999999998 122799999988 77
Q ss_pred EEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC------eEEEEE
Q 039302 307 IWDTRVGKS-ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP------VTSIEW 379 (479)
Q Consensus 307 iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~------I~~v~~ 379 (479)
++.-+-... ....+....+.|.+++|.- ++||-++++| |+|||+...+ .+..+...... -..+.|
T Consensus 142 L~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIAWand~G-v~vyd~~~~~----~l~~i~~p~~~~R~e~fpphl~W 213 (846)
T KOG2066|consen 142 LSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIAWANDDG-VKVYDTPTRQ----RLTNIPPPSQSVRPELFPPHLHW 213 (846)
T ss_pred EehhhhhcCccceeeecCccceEEEEecC---cEEEEecCCC-cEEEeccccc----eeeccCCCCCCCCcccCCCceEe
Confidence 765432221 1123566678999999983 7888888776 7999998776 34444332222 245788
Q ss_pred eCCCCCEEEEEeCCCcEEEEECC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
.+. ..|+.| ...+|+|..++
T Consensus 214 ~~~--~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 214 QDE--DRLVIG-WGDSVKICSIK 233 (846)
T ss_pred cCC--CeEEEe-cCCeEEEEEEe
Confidence 873 455555 44578888888
No 284
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.79 E-value=1.5e-08 Score=92.57 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=103.7
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
.+..|+++.|...++ ++..|..+|.|...|++....-........-|.++|++++.-......|++.+.+|+|++||+|
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R 329 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR 329 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence 456899999999887 9999999999999999875321111233445889999999877444489999999999999999
Q ss_pred CCCc--eeeEEecCCCCEEEEEE--cCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC----CCeEEEEEe
Q 039302 312 VGKS--ALMSFKAHNADVNVISW--NRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK----HPVTSIEWS 380 (479)
Q Consensus 312 ~~~~--~~~~~~~h~~~v~~l~~--~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~----~~I~~v~~s 380 (479)
..+. .+..+.+|-..-.-+-+ ++.. ..++++++|...+||.++.+. .+.++.... ..+.+++|.
T Consensus 330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRiWsl~~gh----Ll~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRIWSLDSGH----LLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred hhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEEEecccCc----eeeccCCCCccccccccceehh
Confidence 8752 27777887543333322 3444 678889999999999999887 666655322 234455554
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.76 E-value=1e-05 Score=80.87 Aligned_cols=197 Identities=11% Similarity=0.039 Sum_probs=112.6
Q ss_pred cceeEEEEecCCCcEEEEEeC---CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWAD---TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
+.+..-+|+|++..+++..+. ...|+++|+.+ ++. ..+....+.....+|+|++.
T Consensus 188 ~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t---------------------g~~-~~lt~~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 188 GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT---------------------GKK-EKIASSQGMLVVSDVSKDGS 245 (419)
T ss_pred CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC---------------------CcE-EEEecCCCcEEeeEECCCCC
Confidence 367789999999654543333 35688888865 222 22222344566788999998
Q ss_pred CeEEEEeCC--CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCceeeEEec
Q 039302 247 GRLVSGDCN--SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--NIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 247 ~~l~sg~~d--g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--~I~iwD~~~~~~~~~~~~~ 322 (479)
..+++.+.+ ..|.++++.++... .+..+........|+|+|+.++++....+ .|.+.|+.++........+
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~-----~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g 320 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLT-----QITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG 320 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEE-----EcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC
Confidence 444454444 46777787664321 22222322345589999985555554444 5777788766422222221
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCC--------CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 323 HNADVNVISWNRLASCLLASGSDD--------GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~d--------g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
. ....|+|++..++++.... ..|.+.|+..+. ...+... .......|+|++..++.+....+
T Consensus 321 ~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~-----~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 321 K----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY-----IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred C----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC-----eEECCCC-CCcCCeEECCCCCEEEEEEccCC
Confidence 1 1248999995454444433 367888887665 2333322 23346889997744444443344
Q ss_pred c--EEEEECCC
Q 039302 395 Q--LTIWDLSL 403 (479)
Q Consensus 395 ~--I~iwdl~~ 403 (479)
. +.+.++..
T Consensus 391 ~~~L~~~~l~g 401 (419)
T PRK04043 391 QSALGIIRLNY 401 (419)
T ss_pred cEEEEEEecCC
Confidence 4 44555543
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.76 E-value=1.7e-05 Score=73.61 Aligned_cols=229 Identities=15% Similarity=0.085 Sum_probs=142.4
Q ss_pred EEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEe
Q 039302 174 RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD 253 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~ 253 (479)
++.|.+....++++-...+.|+.|+.... ....+.... ...+++...+ +.|+.+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~~~~~~~~~--~~G~~~~~~~-g~l~v~~ 58 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------EVEVIDLPG--PNGMAFDRPD-GRLYVAD 58 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------EEEEEESSS--EEEEEEECTT-SEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------eEEEEecCC--CceEEEEccC-CEEEEEE
Confidence 56788845488888778999999998772 112222222 6677777333 3677777
Q ss_pred CCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCC--------CcEEEEEcCCCCceeeEEecCC
Q 039302 254 CNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVD--------GNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 254 ~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~d--------g~I~iwD~~~~~~~~~~~~~h~ 324 (479)
.. .+.++|+.++............ .....+++++.|+|. +.++.... |.|..++.. ++ +......-
T Consensus 59 ~~-~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~--~~~~~~~~ 133 (246)
T PF08450_consen 59 SG-GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK--VTVVADGL 133 (246)
T ss_dssp TT-CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE--EEEEEEEE
T ss_pred cC-ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce--EEEEecCc
Confidence 54 4555688775332211111112 345789999999998 77776543 457777776 32 23333334
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCC---ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGD---SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~---~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
...+.|+|+|++..++++-+..+.|..+++....... ..+..+..-.+..-.+++..++ ++.++....+.|.+++.
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p 212 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDP 212 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEET
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECC
Confidence 5679999999996667788888999999986443200 1122222222347789999855 88888778999999998
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTA 458 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~ 458 (479)
. ++ .+.........+++++|. |+...|+++++
T Consensus 213 ~-G~------------------------~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 213 D-GK------------------------LLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp T-SC------------------------EEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred C-cc------------------------EEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 7 32 222233333479999995 56566777765
No 287
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.75 E-value=9.8e-05 Score=68.82 Aligned_cols=210 Identities=11% Similarity=0.167 Sum_probs=137.9
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc----------eEEEEeC
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE----------GYAIDWN 242 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----------v~~l~~s 242 (479)
+-++++++++.++++--..|.|.++-++..... .+...+..|.+. +....+.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l------------------~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t 153 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL------------------QPVVQVVKHTGSGPHERQESPHVHSANFT 153 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCcc------------------ccceeeeecCCCCCCccccCCccceeeeC
Confidence 889999999666666566799999999774211 111111123322 7788999
Q ss_pred CCCCCeEEEEeC-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 243 PVAPGRLVSGDC-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 243 ~~~~~~l~sg~~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
|++. +|++.+. --.|.+|++..+.........+ .-...-+.|.|+|+++...+.+--+++|.+|........+..+.
T Consensus 154 P~~~-~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ 231 (346)
T COG2706 154 PDGR-YLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ 231 (346)
T ss_pred CCCC-EEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEee
Confidence 9998 8887763 2389999998654433222222 33456788999999996666677899999999987422222221
Q ss_pred ---------cCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 322 ---------AHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 322 ---------~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
........|..+++| ++|.++. ....|.+|.+......-..+.....+...-+...++|.+ ++|+++.
T Consensus 232 ~i~tlP~dF~g~~~~aaIhis~dG-rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g-~~Liaa~ 309 (346)
T COG2706 232 TIDTLPEDFTGTNWAAAIHISPDG-RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSG-RFLIAAN 309 (346)
T ss_pred eeccCccccCCCCceeEEEECCCC-CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCC-CEEEEEc
Confidence 123467889999999 5555543 334788888766543111223333355557889999965 7777776
Q ss_pred C-CCcEEEEECCCC
Q 039302 392 A-DNQLTIWDLSLE 404 (479)
Q Consensus 392 ~-Dg~I~iwdl~~~ 404 (479)
. ...|.+|.....
T Consensus 310 q~sd~i~vf~~d~~ 323 (346)
T COG2706 310 QKSDNITVFERDKE 323 (346)
T ss_pred cCCCcEEEEEEcCC
Confidence 6 457999988765
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=1.5e-06 Score=86.81 Aligned_cols=199 Identities=14% Similarity=0.174 Sum_probs=138.1
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.||.+.|.-+.|..+. .-|.|...+|.|.||-+-+.. .-...+-.....-|.+|.
T Consensus 63 mNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~GlIiVWmlykgs-------------------W~EEMiNnRnKSvV~Sms 122 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNENN-QKLTTSDTSGLIIVWMLYKGS-------------------WCEEMINNRNKSVVVSMS 122 (1189)
T ss_pred hhhhhccCcceEEEEEecccc-ccccccCCCceEEEEeeeccc-------------------HHHHHhhCcCccEEEEEE
Confidence 335688999999999999988 566677889999999986620 111111122345788999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC------
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------ 314 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------ 314 (479)
|+.+|. .++..-.||.|.+=.+.....|. +.+.+. ....+.|+++.. .++.+-..|.+++||....-
T Consensus 123 Wn~dG~-kIcIvYeDGavIVGsvdGNRIwg---KeLkg~--~l~hv~ws~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~ 195 (1189)
T KOG2041|consen 123 WNLDGT-KICIVYEDGAVIVGSVDGNRIWG---KELKGQ--LLAHVLWSEDLE-QALFKKANGETHLYDNQGNFERKLEK 195 (1189)
T ss_pred EcCCCc-EEEEEEccCCEEEEeeccceecc---hhcchh--eccceeecccHH-HHHhhhcCCcEEEecccccHHHhhhh
Confidence 999998 99999999999887776655444 223221 234689999988 77777788999999986541
Q ss_pred ceeeEE----ecCCCCEEEEEEc--------CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 315 SALMSF----KAHNADVNVISWN--------RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 315 ~~~~~~----~~h~~~v~~l~~~--------p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.+.... ......|..+.|+ |+. ..||.+-..|.+.|-.-.+... |+..-. .-.|..+.|+++
T Consensus 196 ~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdr-P~lavcy~nGr~QiMR~eND~~---Pvv~dt--gm~~vgakWnh~ 269 (1189)
T KOG2041|consen 196 DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDR-PRLAVCYANGRMQIMRSENDPE---PVVVDT--GMKIVGAKWNHN 269 (1189)
T ss_pred ceEEeeeeeecCCCccccceeeccCccccCCCCC-CEEEEEEcCceehhhhhcCCCC---CeEEec--ccEeecceecCC
Confidence 121111 2223346677775 455 6899999999998854443332 444333 367899999996
Q ss_pred CCCEEEEEeCC
Q 039302 383 EGSTLAVSSAD 393 (479)
Q Consensus 383 ~~~~las~s~D 393 (479)
+ .+||.+|.|
T Consensus 270 G-~vLAvcG~~ 279 (1189)
T KOG2041|consen 270 G-AVLAVCGND 279 (1189)
T ss_pred C-cEEEEccCc
Confidence 5 999999875
No 289
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.74 E-value=4.2e-05 Score=73.59 Aligned_cols=237 Identities=12% Similarity=0.115 Sum_probs=132.0
Q ss_pred EecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-------CCceEEEE
Q 039302 177 AMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-------KDEGYAID 240 (479)
Q Consensus 177 ~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~ 240 (479)
++|++..+.++.+ .+..|.+||..+ .+.+..+..- ...-..++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t---------------------~~~~~~i~~p~~p~~~~~~~~~~~~ 111 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQT---------------------HLPIADIELPEGPRFLVGTYPWMTS 111 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECcc---------------------CcEEeEEccCCCchhhccCccceEE
Confidence 9999977777777 789999999998 3444444321 22344789
Q ss_pred eCCCCCCeEEEEe-C-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce-e
Q 039302 241 WNPVAPGRLVSGD-C-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-L 317 (479)
Q Consensus 241 ~s~~~~~~l~sg~-~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-~ 317 (479)
++|+++ +|+... . +..|.+.|+.+++...... . .+...-...++ .. +.+-+.||.....-+...... .
T Consensus 112 ls~dgk-~l~V~n~~p~~~V~VvD~~~~kvv~ei~--v---p~~~~vy~t~e-~~--~~~~~~Dg~~~~v~~d~~g~~~~ 182 (352)
T TIGR02658 112 LTPDNK-TLLFYQFSPSPAVGVVDLEGKAFVRMMD--V---PDCYHIFPTAN-DT--FFMHCRDGSLAKVGYGTKGNPKI 182 (352)
T ss_pred ECCCCC-EEEEecCCCCCEEEEEECCCCcEEEEEe--C---CCCcEEEEecC-Cc--cEEEeecCceEEEEecCCCceEE
Confidence 999998 777655 3 7899999998765422100 1 11111111111 11 112233444444333322110 1
Q ss_pred eE---EecCCCCE-EEEEEcC-CCCcEEEEEeCCCeEEEEeCCCCCCCC-ceEEEee-------cCCCCeEEEEEeCCCC
Q 039302 318 MS---FKAHNADV-NVISWNR-LASCLLASGSDDGTFSIHDLRLLKGGD-SVVAHFE-------YHKHPVTSIEWSPHEG 384 (479)
Q Consensus 318 ~~---~~~h~~~v-~~l~~~p-~~~~~l~sgs~dg~i~iwDlr~~~~~~-~~~~~~~-------~h~~~I~~v~~sp~~~ 384 (479)
.+ +..-...+ ..-.|.+ ++ .++..... |.|.+.|+....... .++..+. ...+.+.-++++|+++
T Consensus 183 ~~~~vf~~~~~~v~~rP~~~~~dg-~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~ 260 (352)
T TIGR02658 183 KPTEVFHPEDEYLINHPAYSNKSG-RLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARD 260 (352)
T ss_pred eeeeeecCCccccccCCceEcCCC-cEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCC
Confidence 11 11100000 0003455 56 56655555 999999975433110 1222221 1344455699999775
Q ss_pred CEEEEE-e--------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCC-cEE
Q 039302 385 STLAVS-S--------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVP-GMI 454 (479)
Q Consensus 385 ~~las~-s--------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~-~ll 454 (479)
.+++.. + ..+.|.++|..+.+ .+.....| ..+..++++|++. .++
T Consensus 261 ~lyV~~~~~~~~thk~~~~~V~ViD~~t~k------------------------vi~~i~vG-~~~~~iavS~Dgkp~ly 315 (352)
T TIGR02658 261 RIYLLADQRAKWTHKTASRFLFVVDAKTGK------------------------RLRKIELG-HEIDSINVSQDAKPLLY 315 (352)
T ss_pred EEEEEecCCccccccCCCCEEEEEECCCCe------------------------EEEEEeCC-CceeeEEECCCCCeEEE
Confidence 555433 1 12579999998874 22333333 4799999999997 666
Q ss_pred EEEcCCC-ceEEeeecc
Q 039302 455 VSTAADG-FNILMPSNI 470 (479)
Q Consensus 455 ~s~~~dg-i~iw~~~~~ 470 (479)
++...++ |.+++..+.
T Consensus 316 vtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 316 ALSTGDKTLYIFDAETG 332 (352)
T ss_pred EeCCCCCcEEEEECcCC
Confidence 6665556 999988665
No 290
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.72 E-value=6.6e-06 Score=79.41 Aligned_cols=204 Identities=18% Similarity=0.279 Sum_probs=131.6
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCce---------------EEEEeCCCCcccccccccccCCCCCccccCCCcEEe
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGH---------------VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF 229 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~---------------V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (479)
...|. .|.-+.|+|.+ .+|.|++..+. +.+||+.. +..+..+
T Consensus 68 ~~~~~-~V~~~~fSP~~-kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~s---------------------g~iv~sf 124 (561)
T COG5354 68 RFRHP-DVKYLDFSPNE-KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIAS---------------------GMIVFSF 124 (561)
T ss_pred eeecC-CceecccCccc-ceeeeeccCCccChhhccCCccccCceeEEeccC---------------------ceeEeec
Confidence 33443 58888899988 78888876554 88999887 5566666
Q ss_pred cCCCCc--eE-EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCc-EEEE-----E
Q 039302 230 GGHKDE--GY-AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESD-VFAS-----C 299 (479)
Q Consensus 230 ~~h~~~--v~-~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~-~l~s-----~ 299 (479)
.+...+ ++ -+.|+-+.. ++|-- ....++|+++ +..... .++..- ...|.+..|+|.+.+ .||. .
T Consensus 125 ~~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~i~e~-t~n~~~---~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~ 198 (561)
T COG5354 125 NGISQPYLGWPVLKFSIDDK-YVARV-VGSSLYIHEI-TDNIEE---HPFKNLRPVGILDFSISPEGNHDELAYWTPEKL 198 (561)
T ss_pred cccCCcccccceeeeeecch-hhhhh-ccCeEEEEec-CCcccc---CchhhccccceeeEEecCCCCCceEEEEccccC
Confidence 665555 66 788888776 54444 3458999997 433322 222222 356889999997432 3443 4
Q ss_pred eCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe----------CCCeEEEEeCCCCCCCCceEEEeec
Q 039302 300 SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS----------DDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 300 s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs----------~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
+..++++||.+.... .+.+..-....=..+.|++.+..+|+-.- ....++|++++.... ++. ..
T Consensus 199 ~kpa~~~i~sIp~~s-~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i---~V~--~~ 272 (561)
T COG5354 199 NKPAMVRILSIPKNS-VLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI---PVE--KD 272 (561)
T ss_pred CCCcEEEEEEccCCC-eeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc---cee--cc
Confidence 568899999998654 33332222233356889998844433221 124678888885442 222 25
Q ss_pred CCCCeEEEEEeCCCCCEEEEE--eCCCcEEEEECCCC
Q 039302 370 HKHPVTSIEWSPHEGSTLAVS--SADNQLTIWDLSLE 404 (479)
Q Consensus 370 h~~~I~~v~~sp~~~~~las~--s~Dg~I~iwdl~~~ 404 (479)
-.++|....|.|++ +.|++. -.+-.+.++|++..
T Consensus 273 ~~~pVhdf~W~p~S-~~F~vi~g~~pa~~s~~~lr~N 308 (561)
T COG5354 273 LKDPVHDFTWEPLS-SRFAVISGYMPASVSVFDLRGN 308 (561)
T ss_pred ccccceeeeecccC-CceeEEecccccceeecccccc
Confidence 57899999999976 555444 46888999999865
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=4.3e-08 Score=94.70 Aligned_cols=170 Identities=19% Similarity=0.283 Sum_probs=120.8
Q ss_pred CcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc---ccCCCCcccCCCcEEEEEECCCCCcEEEEEeC
Q 039302 225 PLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATW---NVDPNPFIGHAASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 225 ~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~ 301 (479)
.+..|.||+..|.+++--.+.+ -+++++.|.+|++|.++..+.. .....++..|+.+|+++.|-.+.+ .+++ .
T Consensus 727 rL~nf~GH~~~iRai~AidNEN-SFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~S--c 802 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNEN-SFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIAS--C 802 (1034)
T ss_pred eeecccCcHHHhHHHHhccccc-ceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeee--c
Confidence 4567889999888887665554 8999999999999999764331 112356889999999999998776 5654 4
Q ss_pred CCcEEEEEcCCCCceeeEE---ecCCCCEEEEEEcC-CCCcEEEE-EeCCCeEEEEeCCCCCCCCceEEEee-----cCC
Q 039302 302 DGNIAIWDTRVGKSALMSF---KAHNADVNVISWNR-LASCLLAS-GSDDGTFSIHDLRLLKGGDSVVAHFE-----YHK 371 (479)
Q Consensus 302 dg~I~iwD~~~~~~~~~~~---~~h~~~v~~l~~~p-~~~~~l~s-gs~dg~i~iwDlr~~~~~~~~~~~~~-----~h~ 371 (479)
||-|++||.--++ ++... ..|...-+..+.-. +. .++.+ ++...+|+++|.|... .+..++ +..
T Consensus 803 D~giHlWDPFigr-~Laq~~dapk~~a~~~ikcl~nv~~-~iliAgcsaeSTVKl~DaRsce----~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGR-LLAQMEDAPKEGAGGNIKCLENVDR-HILIAGCSAESTVKLFDARSCE----WTCELKVCNAPGPN 876 (1034)
T ss_pred cCcceeecccccc-hhHhhhcCcccCCCceeEecccCcc-hheeeeccchhhheeeeccccc----ceeeEEeccCCCCc
Confidence 7999999976654 22211 22332222222222 33 44444 4788999999999877 333333 334
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 372 HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.-+.+++..|.+ +.++++-..|+|.+.|.++++
T Consensus 877 a~~R~iaVa~~G-N~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 877 ALTRAIAVADKG-NKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred hheeEEEeccCc-chhhHHhcCCcEEEEecCCCc
Confidence 568899999855 999999999999999999886
No 292
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.70 E-value=4.3e-09 Score=103.41 Aligned_cols=207 Identities=18% Similarity=0.248 Sum_probs=144.0
Q ss_pred CCceEEEEeCCCCC-CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe----CCCcEEE
Q 039302 233 KDEGYAIDWNPVAP-GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS----VDGNIAI 307 (479)
Q Consensus 233 ~~~v~~l~~s~~~~-~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s----~dg~I~i 307 (479)
...+.|++++.+.. -+++.|..+|.|.+-.++...... .....+|...+++++|++-+.++||+|- .|..+.|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs--~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS--AEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc--ceecccccccccccccccccHHHHHhhhhhhcccCCccc
Confidence 34667888776554 389999999999999886543211 1335567889999999998877888874 3678999
Q ss_pred EEcCCCCc-eeeE--Ee-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 308 WDTRVGKS-ALMS--FK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 308 wD~~~~~~-~~~~--~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
||+.+.-. |... +. ......++++|..+. .++++|.....++++|+|.... .... ..+..+..+...|..
T Consensus 134 wdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~---~~~s--vnTk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 134 WDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLD---SVSS--VNTKYVQGITVDPFS 207 (783)
T ss_pred eecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhh---hhhh--hhhhhcccceecCCC
Confidence 99987611 1111 12 244567899999777 8999999999999999995432 1222 234456677788866
Q ss_pred CCEEEEEeCCCcEEEEE-CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC---CCeeeEEEeCCCCcEEEEEcC
Q 039302 384 GSTLAVSSADNQLTIWD-LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ---KDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwd-l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~---~~V~~v~w~p~~~~ll~s~~~ 459 (479)
++++++.. ||.|.+|| .+..+.+.. ...|... ..+..++|+|..++++++...
T Consensus 208 ~nY~cs~~-dg~iAiwD~~rnienpl~----------------------~i~~~~N~~~~~l~~~aycPtrtglla~l~R 264 (783)
T KOG1008|consen 208 PNYFCSNS-DGDIAIWDTYRNIENPLQ----------------------IILRNENKKPKQLFALAYCPTRTGLLAVLSR 264 (783)
T ss_pred CCceeccc-cCceeeccchhhhccHHH----------------------HHhhCCCCcccceeeEEeccCCcchhhhhcc
Confidence 68888876 99999999 444332211 1112111 138889999999999999988
Q ss_pred CC--ceEEeeecc
Q 039302 460 DG--FNILMPSNI 470 (479)
Q Consensus 460 dg--i~iw~~~~~ 470 (479)
+. |+.+.+..+
T Consensus 265 dS~tIrlydi~~v 277 (783)
T KOG1008|consen 265 DSITIRLYDICVV 277 (783)
T ss_pred CcceEEEeccccc
Confidence 87 666666555
No 293
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.70 E-value=1.2e-05 Score=80.23 Aligned_cols=187 Identities=9% Similarity=0.009 Sum_probs=111.1
Q ss_pred ceEEEEeCCCCCCeEEEEeC---CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC--CcEEEEE
Q 039302 235 EGYAIDWNPVAPGRLVSGDC---NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD--GNIAIWD 309 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d--g~I~iwD 309 (479)
......|+|++...++..+. ...|.++|+.++.... +....+.+....|+|+++.++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-----lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-----IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-----EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 77889999999732543333 3579999997754422 222344566778999998566666555 4577778
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
+.++. ...+..+........|+|++..++++....+ .|.+.|+..+. . ..+...... ...|+|++..++
T Consensus 264 l~~g~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~----~-~rlt~~g~~--~~~~SPDG~~Ia 334 (419)
T PRK04043 264 TNTKT--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS----V-EQVVFHGKN--NSSVSTYKNYIV 334 (419)
T ss_pred CCCCc--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC----e-EeCccCCCc--CceECCCCCEEE
Confidence 77664 3334333333345689999955555554444 57777887655 2 122111111 248999774444
Q ss_pred EEEeCC--------CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 388 AVSSAD--------NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 388 as~s~D--------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
+++... ..|.+.|+..+.. +.+... + ......|+|++..++.+...
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g~~-----------------------~~LT~~-~--~~~~p~~SPDG~~I~f~~~~ 388 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSDYI-----------------------RRLTAN-G--VNQFPRFSSDGGSIMFIKYL 388 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCCCe-----------------------EECCCC-C--CcCCeEECCCCCEEEEEEcc
Confidence 444332 2567777765421 222211 1 22358899999877777665
Q ss_pred CC
Q 039302 460 DG 461 (479)
Q Consensus 460 dg 461 (479)
++
T Consensus 389 ~~ 390 (419)
T PRK04043 389 GN 390 (419)
T ss_pred CC
Confidence 55
No 294
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.69 E-value=2.9e-07 Score=86.08 Aligned_cols=161 Identities=11% Similarity=0.084 Sum_probs=106.7
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCc--EEEEEeCCCcEEEEEcCCC
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESD--VFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~--~l~s~s~dg~I~iwD~~~~ 313 (479)
...+..++.+. +||.+..+....++++..... .........-...-+.+.|...... ++-..+....+.+|....+
T Consensus 65 ~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGR-LVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCce-EEEEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 33445566665 777777777777777755432 1000000011122233444444442 2223344455556655543
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
+...+.+|-.-+..++|+|++ .+|+++..|..|+|-...... .+..| -||+.-|..++.-+ + +.|++||.
T Consensus 143 --~~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f----~IesfclGH~eFVS~isl~~-~-~~LlS~sG 213 (390)
T KOG3914|consen 143 --RCEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATF----VIESFCLGHKEFVSTISLTD-N-YLLLSGSG 213 (390)
T ss_pred --CcchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCccc----chhhhccccHhheeeeeecc-C-ceeeecCC
Confidence 345567899999999999999 999999999999997776554 45444 46999999999987 3 67999999
Q ss_pred CCcEEEEECCCCCCh
Q 039302 393 DNQLTIWDLSLEKDE 407 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~ 407 (479)
|++|++||+.+++..
T Consensus 214 D~tlr~Wd~~sgk~L 228 (390)
T KOG3914|consen 214 DKTLRLWDITSGKLL 228 (390)
T ss_pred CCcEEEEecccCCcc
Confidence 999999999988743
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.67 E-value=8.1e-06 Score=73.67 Aligned_cols=201 Identities=13% Similarity=0.170 Sum_probs=113.1
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEeCCCC----
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDWNPVA---- 245 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~---- 245 (479)
.=.+++|+|++ .+||.+...|+|++||+....-.. ..+...+.+ -...|-+|.|....
T Consensus 45 QWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~----------------I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ 107 (282)
T PF15492_consen 45 QWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFV----------------IPPAMSFPGDLSDAIAGLIFLEYKKSAQ 107 (282)
T ss_pred hheEEEECCCC-cEEEEEcCCCeEEEEecccceeEE----------------cCcccccCCccccceeeeEeeccccccc
Confidence 35679999999 899999999999999987521111 011111111 12456666665443
Q ss_pred -CCeEEEEeCCCeEEEEecCCC--Cccc-cCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 246 -PGRLVSGDCNSCIHLWEPASD--ATWN-VDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 246 -~~~l~sg~~dg~I~lwd~~~~--~~~~-~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
...|+.-...|.++-|-+..+ +... .....+.. +...|+++.++|..+ +|++||.... ..+ . -
T Consensus 108 ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~------~~~---~--s 175 (282)
T PF15492_consen 108 WSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR-LLLVGGCEQN------QDG---M--S 175 (282)
T ss_pred cceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC-EEEEeccCCC------CCc---c--c
Confidence 125677777888877776332 1110 00011222 356899999999998 6666664322 110 0 1
Q ss_pred ecCCCCEEEEEEcCCCCcEEE-EEeCCCe------EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 321 KAHNADVNVISWNRLASCLLA-SGSDDGT------FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~-sgs~dg~------i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
.+....+++-..-.+.+.+.. +...|+. ..+|.+-+.. .......-...|..|..+|++ ..||+...+
T Consensus 176 ~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~----~fs~~~~~~d~i~kmSlSPdg-~~La~ih~s 250 (282)
T PF15492_consen 176 KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK----FFSRQGQEQDGIFKMSLSPDG-SLLACIHFS 250 (282)
T ss_pred cccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee----eeeccccCCCceEEEEECCCC-CEEEEEEcC
Confidence 122333444333333323322 2222222 1233322221 111112245689999999965 999999999
Q ss_pred CcEEEEECCCCC
Q 039302 394 NQLTIWDLSLEK 405 (479)
Q Consensus 394 g~I~iwdl~~~~ 405 (479)
|.|.+|++....
T Consensus 251 G~lsLW~iPsL~ 262 (282)
T PF15492_consen 251 GSLSLWEIPSLR 262 (282)
T ss_pred CeEEEEecCcch
Confidence 999999998764
No 296
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=9.7e-07 Score=82.62 Aligned_cols=89 Identities=13% Similarity=0.197 Sum_probs=74.6
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
.++...+.+|...|..|+|+|...|+|..++.+..|.|.|+.+... ...+..+ ..+++++|.-++.+++..|-..
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~----vssy~a~-~~~wSC~wDlde~h~IYaGl~n 257 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV----VSSYIAY-NQIWSCCWDLDERHVIYAGLQN 257 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee----eeheecc-CCceeeeeccCCcceeEEeccC
Confidence 3444566778889999999999999999999999999999987543 2445555 7899999999999899999999
Q ss_pred CcEEEEEcCCCCce
Q 039302 303 GNIAIWDTRVGKSA 316 (479)
Q Consensus 303 g~I~iwD~~~~~~~ 316 (479)
|.|.|||+|....+
T Consensus 258 G~VlvyD~R~~~~~ 271 (463)
T KOG1645|consen 258 GMVLVYDMRQPEGP 271 (463)
T ss_pred ceEEEEEccCCCch
Confidence 99999999987543
No 297
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=2.2e-06 Score=86.47 Aligned_cols=158 Identities=15% Similarity=0.243 Sum_probs=123.4
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC-----------CcEEEEEeCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE-----------SDVFASCSVDG 303 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-----------~~~l~s~s~dg 303 (479)
.-.+++|+|.| .||-|+ ...|.+-|..+.+. .+.+.-|...|+.+.|.|.. .-++|++...|
T Consensus 17 N~~A~Dw~~~G--LiAygs-hslV~VVDs~s~q~----iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 17 NRNAADWSPSG--LIAYGS-HSLVSVVDSRSLQL----IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccCccc--eEEEec-CceEEEEehhhhhh----hhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 46689999987 788887 45788888776544 35577789999999997742 22577888899
Q ss_pred cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCC---CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLA---SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~---~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
.|.+||..... .+..+..|..++..++|-+.. ..+|++-....+|.+|+..++. .+...........++.+.
T Consensus 90 rIil~d~~~~s-~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~----k~Wk~~ys~~iLs~f~~D 164 (1062)
T KOG1912|consen 90 RIILVDFVLAS-VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGE----KFWKYDYSHEILSCFRVD 164 (1062)
T ss_pred cEEEEEehhhh-hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCc----eeeccccCCcceeeeeeC
Confidence 99999999874 566678888899999986532 2566666777899999999988 566666666677889999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|.+.+.|+..+..|.|.+-+.-..
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~l~~ 188 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKDLGL 188 (1062)
T ss_pred CCCcceEEEEccCceEEEEeccCC
Confidence 999899998888998888776544
No 298
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.62 E-value=3.4e-08 Score=100.33 Aligned_cols=194 Identities=15% Similarity=0.223 Sum_probs=137.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+..|....+|++|+-.. +.|+.|+..|.|++|++.+ +.......+|...|+-+.=+.
T Consensus 1096 ~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~s---------------------G~~e~s~ncH~SavT~vePs~ 1153 (1516)
T KOG1832|consen 1096 SFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSS---------------------GSMEESVNCHQSAVTLVEPSV 1153 (1516)
T ss_pred hhhccccceeeEEeecCC-ceEEeeeccceEEEEEccC---------------------ccccccccccccccccccccC
Confidence 455788999999999977 7788999999999999998 556667789999999999999
Q ss_pred CCCCeEEEEeCCC-eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE-Ee
Q 039302 244 VAPGRLVSGDCNS-CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS-FK 321 (479)
Q Consensus 244 ~~~~~l~sg~~dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~-~~ 321 (479)
+|.-+|.+++... -..+|++...... ...|. .-.++.|+.... .-+.|.......|||+.++. ++.+ +.
T Consensus 1154 dgs~~Ltsss~S~PlsaLW~~~s~~~~---~Hsf~----ed~~vkFsn~~q-~r~~gt~~d~a~~YDvqT~~-~l~tylt 1224 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASSTGGP---RHSFD----EDKAVKFSNSLQ-FRALGTEADDALLYDVQTCS-PLQTYLT 1224 (1516)
T ss_pred CcceeeeeccccCchHHHhccccccCc---ccccc----ccceeehhhhHH-HHHhcccccceEEEecccCc-HHHHhcC
Confidence 9884444444443 5789998663221 12232 345788887654 33445555679999999986 3333 21
Q ss_pred ---cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 322 ---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 322 ---~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
+.+..-++..|+|.. .+++ .|| .+||+|... .++.|...+..+ .--|+|++ .-++.-++ |
T Consensus 1225 ~~~~~~y~~n~a~FsP~D-~LIl---ndG--vLWDvR~~~----aIh~FD~ft~~~-~G~FHP~g-~eVIINSE-----I 1287 (1516)
T KOG1832|consen 1225 DTVTSSYSNNLAHFSPCD-TLIL---NDG--VLWDVRIPE----AIHRFDQFTDYG-GGGFHPSG-NEVIINSE-----I 1287 (1516)
T ss_pred cchhhhhhccccccCCCc-ceEe---eCc--eeeeeccHH----HHhhhhhheecc-cccccCCC-ceEEeech-----h
Confidence 223334889999998 6666 466 589999886 677776555332 34599966 66666654 8
Q ss_pred EECCCCC
Q 039302 399 WDLSLEK 405 (479)
Q Consensus 399 wdl~~~~ 405 (479)
||+++.+
T Consensus 1288 wD~RTF~ 1294 (1516)
T KOG1832|consen 1288 WDMRTFK 1294 (1516)
T ss_pred hhhHHHH
Confidence 9998863
No 299
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.55 E-value=2.4e-07 Score=58.83 Aligned_cols=37 Identities=41% Similarity=0.815 Sum_probs=35.0
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
++.++.+|..+|++|+|+|+ +.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 78899999999999999996 49999999999999997
No 300
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=2.9e-06 Score=80.57 Aligned_cols=277 Identities=14% Similarity=0.079 Sum_probs=175.8
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..-|...|+.+..... .++.+++-||.++.|--..-. ..+-+..+..|...+.+++.+-+
T Consensus 5 symhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~is------------------GvEfVKhFraHL~~I~sl~~S~d 64 (558)
T KOG0882|consen 5 SYMHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRIS------------------GVEFVKHFRAHLGVILSLAVSYD 64 (558)
T ss_pred hhcccceeeeEeeehh--heEEeeecchhhhhcCCCCcc------------------ceeehhhhHHHHHHHHhhhcccc
Confidence 3457888888776654 588899999999999865410 13445567788889999999999
Q ss_pred CCCeEEEEeC-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCc-EEEE-EeCCCcEEEEEcCCCCc-eeeEE
Q 039302 245 APGRLVSGDC-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESD-VFAS-CSVDGNIAIWDTRVGKS-ALMSF 320 (479)
Q Consensus 245 ~~~~l~sg~~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-~l~s-~s~dg~I~iwD~~~~~~-~~~~~ 320 (479)
+- .++|++. |..++++|+..-..... ..+.--.+.+..+ .+|.... .++. .-.+|.|.++|-+.... ....-
T Consensus 65 g~-L~~Sv~d~Dhs~KvfDvEn~Dminm--iKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 65 GW-LFRSVEDPDHSVKVFDVENFDMINM--IKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred ce-eEeeccCcccceeEEEeeccchhhh--cccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 87 8888777 99999999977544321 1111122333322 2332221 3333 33579999999887653 33344
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CCCCC----------ceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL-LKGGD----------SVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~-~~~~~----------~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.-|..+|.++.+++.+ ..+++....|.|.-|.... .+.+. .-+..+...+...+++.|+|.+ ..+++
T Consensus 141 klH~sPV~~i~y~qa~-Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g-~qist 218 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAG-DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG-AQIST 218 (558)
T ss_pred ccccCceEEEEeeccc-cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc-Ccccc
Confidence 6799999999999999 7888888899999998872 22110 1122233345678899999965 89999
Q ss_pred EeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCC----------ceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 390 SSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPP----------QLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~----------~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
-+.|..|+++++.+++-..+..+...........+..++. .-+-.| +...-+.+.|...+. +|.-+.-
T Consensus 219 l~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~-~~~~~~~~~fdes~~-flly~t~ 296 (558)
T KOG0882|consen 219 LNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH-GSTVGTNAVFDESGN-FLLYGTI 296 (558)
T ss_pred cCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh-cCcccceeEEcCCCC-EEEeecc
Confidence 9999999999999987543322211110000001111100 000111 223456678888886 5555555
Q ss_pred CCceEEeeec
Q 039302 460 DGFNILMPSN 469 (479)
Q Consensus 460 dgi~iw~~~~ 469 (479)
=||+|+++.+
T Consensus 297 ~gikvin~~t 306 (558)
T KOG0882|consen 297 LGIKVINLDT 306 (558)
T ss_pred eeEEEEEeec
Confidence 6677777654
No 301
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.54 E-value=1.8e-06 Score=88.62 Aligned_cols=186 Identities=13% Similarity=0.223 Sum_probs=135.1
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
..++-|+-...+..+|+++..... ...-..+.|.-+.- +++ ++.+|...|+|.+-|.++.+ .+.++.+|.+.
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~~~e~r----~~~v~a~~v~imR~--Nnr-~lf~G~t~G~V~LrD~~s~~-~iht~~aHs~s 219 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNTEKETR----TTNVSASGVTIMRY--NNR-NLFCGDTRGTVFLRDPNSFE-TIHTFDAHSGS 219 (1118)
T ss_pred cceeecchhhheeeeecccceeee----eeeccCCceEEEEe--cCc-EEEeecccceEEeecCCcCc-eeeeeeccccc
Confidence 377788878888888987754421 11112223554543 355 88999999999999999986 88999999998
Q ss_pred EEEEEEcCCCCcEEEEEeCC---------CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 327 VNVISWNRLASCLLASGSDD---------GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~d---------g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
|..+... | ++|+++|.. .-|+|||+|+.+ .+..+..+.++ .-+.|+|.-...+++++.-|+..
T Consensus 220 iSDfDv~--G-NlLitCG~S~R~~~l~~D~FvkVYDLRmmr----al~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 220 ISDFDVQ--G-NLLITCGYSMRRYNLAMDPFVKVYDLRMMR----ALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eeeeecc--C-CeEEEeecccccccccccchhhhhhhhhhh----ccCCcccccCc-hhhhhcccccceEEEEeccccee
Confidence 8766554 5 788888764 457999999988 45555555555 66889998888999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+-|..... ..+.....+|.....+..+.+++++. .++-+..+| |++|...+
T Consensus 292 ~vd~~~ls--------------------NP~~~~~~v~p~~s~i~~fDiSsn~~-alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 292 FVDTATLS--------------------NPPAGVKMVNPNGSGISAFDISSNGD-ALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred eccccccC--------------------CCccceeEEccCCCcceeEEecCCCc-eEEEecccCcEeeecCCC
Confidence 99944432 12234566666556799999999996 556565555 99998443
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.54 E-value=2.1e-06 Score=88.02 Aligned_cols=184 Identities=17% Similarity=0.255 Sum_probs=130.7
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
..+.-|+-...+..+|+.+ .+......-....|+-|.-+ +. .|.+|+..|+|.+-|
T Consensus 148 ~~~i~Gg~Q~~li~~Dl~~---------------------~~e~r~~~v~a~~v~imR~N--nr-~lf~G~t~G~V~LrD 203 (1118)
T KOG1275|consen 148 STLIMGGLQEKLIHIDLNT---------------------EKETRTTNVSASGVTIMRYN--NR-NLFCGDTRGTVFLRD 203 (1118)
T ss_pred cceeecchhhheeeeeccc---------------------ceeeeeeeccCCceEEEEec--Cc-EEEeecccceEEeec
Confidence 3444556666677777776 23333332233346655543 34 899999999999999
Q ss_pred cCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC---------CCcEEEEEcCCCCceeeEEecCCCCEEEEEEc
Q 039302 263 PASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV---------DGNIAIWDTRVGKSALMSFKAHNADVNVISWN 333 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~---------dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~ 333 (479)
+++... ...+..|++.|.++... |+ +|++||. |..|++||+|..+ .+.-+.-+.+ -.-+.|+
T Consensus 204 ~~s~~~----iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmr-al~PI~~~~~-P~flrf~ 274 (1118)
T KOG1275|consen 204 PNSFET----IHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMR-ALSPIQFPYG-PQFLRFH 274 (1118)
T ss_pred CCcCce----eeeeeccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhh-ccCCcccccC-chhhhhc
Confidence 987554 46799999999887765 55 8999885 5568999999875 2222332333 2567889
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 334 p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
|.-...+++.+..|...+-|......+..-+..+......|..+.+++++ ..||.|..+|.|.+|-
T Consensus 275 Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~-~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 275 PSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNG-DALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCC-ceEEEecccCcEeeec
Confidence 98878999999999999999554443222344444455669999999955 9999999999999998
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.6e-06 Score=81.19 Aligned_cols=123 Identities=19% Similarity=0.311 Sum_probs=92.3
Q ss_pred CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 275 PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 275 ~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.+.+|...|.+++|+|...-++..++.+.+|+|.|+++.. .+..+.++ ..+.+++|..+..++|..|-..|.|.|||+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDM 265 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEc
Confidence 4567788999999999887789999999999999999974 67777777 789999999999899999999999999999
Q ss_pred CCCCCCCceEEEeec--CCCCeEEEEEeCC-----CCCEEEEEeCCCcEEEEECCCC
Q 039302 355 RLLKGGDSVVAHFEY--HKHPVTSIEWSPH-----EGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 355 r~~~~~~~~~~~~~~--h~~~I~~v~~sp~-----~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|.... ++..+.+ -..+|..|+.-+- .+.+|+..+.+ +..|.+...
T Consensus 266 R~~~~---~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s 317 (463)
T KOG1645|consen 266 RQPEG---PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFS 317 (463)
T ss_pred cCCCc---hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhcc
Confidence 98875 4544443 2345554443221 22455544443 556766544
No 304
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.50 E-value=9.9e-05 Score=66.79 Aligned_cols=193 Identities=13% Similarity=0.172 Sum_probs=111.2
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCC-cc-cCCCcEEEEEECCCC-----CcEEEEEeCCCcEEE
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNP-FI-GHAASVEDLQWSPTE-----SDVFASCSVDGNIAI 307 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~-~~-~h~~~V~~l~~sp~~-----~~~l~s~s~dg~I~i 307 (479)
.=..++|||++. .||.+...|+|+++|+............ +. .-..+|..+.|.+.. ...|++-...|.++=
T Consensus 45 QWRkl~WSpD~t-lLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 45 QWRKLAWSPDCT-LLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred hheEEEECCCCc-EEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 456899999998 9999999999999999754332221111 11 124567777775443 225667777888887
Q ss_pred EEcCCC--C--ceeeE--Ee-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 308 WDTRVG--K--SALMS--FK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 308 wD~~~~--~--~~~~~--~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
|-+..+ + ....+ +. .+...|+++.|+|.. ++|+.||.... .... -++-...+++-..-
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h-~LLlVgG~~~~------~~~~--------s~a~~~GLtaWRiL 188 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH-RLLLVGGCEQN------QDGM--------SKASSCGLTAWRIL 188 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC-CEEEEeccCCC------CCcc--------ccccccCceEEEEc
Confidence 775322 1 12222 22 246789999999988 66666654332 0000 01112233332222
Q ss_pred CCCCCEE-EEEeCCCc------EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC--CCCeeeEEEeCCCC
Q 039302 381 PHEGSTL-AVSSADNQ------LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG--QKDLKELHWHTQVP 451 (479)
Q Consensus 381 p~~~~~l-as~s~Dg~------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g--~~~V~~v~w~p~~~ 451 (479)
...+.+. ++...|+. ..+|.+-. -.+|...+ +..|..+..+|++.
T Consensus 189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~--------------------------~~~fs~~~~~~d~i~kmSlSPdg~ 242 (282)
T PF15492_consen 189 SDSPYYKQVTSSEDDITASSKRRGLLRIPS--------------------------FKFFSRQGQEQDGIFKMSLSPDGS 242 (282)
T ss_pred CCCCcEEEccccCccccccccccceeeccc--------------------------eeeeeccccCCCceEEEEECCCCC
Confidence 2122222 22222221 12332221 12333333 33699999999996
Q ss_pred cEEEEEcCCC-ceEEeeecc
Q 039302 452 GMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 452 ~ll~s~~~dg-i~iw~~~~~ 470 (479)
+||+...+| |.+|.+.++
T Consensus 243 -~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 243 -LLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred -EEEEEEcCCeEEEEecCcc
Confidence 888888888 999999887
No 305
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=7.7e-07 Score=56.47 Aligned_cols=37 Identities=38% Similarity=0.741 Sum_probs=35.1
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD 353 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD 353 (479)
++..+.+|...|++|+|+|++ .+|++|+.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTS-SEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEeccc-ccceeeCCCCEEEEEC
Confidence 677889999999999999998 9999999999999997
No 306
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.43 E-value=9.3e-05 Score=71.05 Aligned_cols=149 Identities=12% Similarity=0.143 Sum_probs=114.9
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-cEEEEEcCCCCceeeE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG-NIAIWDTRVGKSALMS 319 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg-~I~iwD~~~~~~~~~~ 319 (479)
|++....+++..| -|...|.+...+-. ...+|.+.|.-..+.-+.. -++.|..|| .|-|+|.+++. +..
T Consensus 327 fa~~~Gd~ia~VS-RGkaFi~~~~~~~~------iqv~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e--~kr 396 (668)
T COG4946 327 FAVVNGDYIALVS-RGKAFIMRPWDGYS------IQVGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE--VKR 396 (668)
T ss_pred hccCCCcEEEEEe-cCcEEEECCCCCee------EEcCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce--EEE
Confidence 4444433777777 57777777654322 2346777898888887777 788999999 99999999874 566
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC----c
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN----Q 395 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg----~ 395 (479)
+...-+.|.++..+++| .+++.+.+...|.+.|+.++. +...-+...+-|+.+.|||+. .+||-+--+| .
T Consensus 397 ~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngn----v~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~ 470 (668)
T COG4946 397 IEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGN----VRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQS 470 (668)
T ss_pred eeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCC----eeEecccccceeEEEEEcCCc-eeEEEecCcceeeee
Confidence 77777889999999999 888999999999999999988 333334456789999999965 8888876665 5
Q ss_pred EEEEECCCCC
Q 039302 396 LTIWDLSLEK 405 (479)
Q Consensus 396 I~iwdl~~~~ 405 (479)
|+++|+...+
T Consensus 471 Iklydm~~~K 480 (668)
T COG4946 471 IKLYDMDGGK 480 (668)
T ss_pred EEEEecCCCe
Confidence 8899988754
No 307
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.42 E-value=8e-05 Score=72.79 Aligned_cols=234 Identities=15% Similarity=0.244 Sum_probs=144.4
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
-+-++|+|.| .+|+|-..-| |.+|--.. ...++.| .|. .|.-++|||... +|+|
T Consensus 213 etyv~wSP~G-TYL~t~Hk~G-I~lWGG~~---------------------f~r~~RF-~Hp-~Vq~idfSP~Ek-YLVT 266 (698)
T KOG2314|consen 213 ETYVRWSPKG-TYLVTFHKQG-IALWGGES---------------------FDRIQRF-YHP-GVQFIDFSPNEK-YLVT 266 (698)
T ss_pred eeeEEecCCc-eEEEEEeccc-eeeecCcc---------------------HHHHHhc-cCC-CceeeecCCccc-eEEE
Confidence 3568999999 7888865554 88897655 3444555 355 578899999988 9998
Q ss_pred EeC-----------CCeEEEEecCCCCccccCCCCccc---CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 252 GDC-----------NSCIHLWEPASDATWNVDPNPFIG---HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 252 g~~-----------dg~I~lwd~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
-+. ...|+|||+.++... +.|.. ....-.-..||.+++ +||--.. .+|.||+..+.. ++
T Consensus 267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lk----rsF~~~~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~-ll 339 (698)
T KOG2314|consen 267 YSPEPIIVEEDDNEGQQLIIWDIATGLLK----RSFPVIKSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFM-LL 339 (698)
T ss_pred ecCCccccCcccCCCceEEEEEccccchh----cceeccCCCccccceEEeccCCc-eeEEecc-ceEEEEecCcee-ee
Confidence 652 247999999997552 22222 112223468999998 7766554 679999887642 22
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS- 391 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s- 391 (479)
-.-.-.-..|...+|+|.+ ++||-=... ..+.+-.+.+.+ .+++-.-|.-.=..+.|..++ .+|+.--
T Consensus 340 d~Kslki~gIr~FswsP~~-~llAYwtpe~~~~parvtL~evPs~~----~iRt~nlfnVsDckLhWQk~g-dyLcvkvd 413 (698)
T KOG2314|consen 340 DKKSLKISGIRDFSWSPTS-NLLAYWTPETNNIPARVTLMEVPSKR----EIRTKNLFNVSDCKLHWQKSG-DYLCVKVD 413 (698)
T ss_pred cccccCCccccCcccCCCc-ceEEEEcccccCCcceEEEEecCccc----eeeeccceeeeccEEEeccCC-cEEEEEEE
Confidence 1112233568889999987 777754322 245555555554 455444444333456676644 5555421
Q ss_pred ---------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-
Q 039302 392 ---------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 392 ---------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
.=..+-|+.++.. ++|...+-.. ..|..++|-|.|..+.+-.+...
T Consensus 414 R~tK~~~~g~f~n~eIfrireK---------------------dIpve~velk---e~vi~FaWEP~gdkF~vi~g~~~k 469 (698)
T KOG2314|consen 414 RHTKSKVKGQFSNLEIFRIREK---------------------DIPVEVVELK---ESVIAFAWEPHGDKFAVISGNTVK 469 (698)
T ss_pred eeccccccceEeeEEEEEeecc---------------------CCCceeeecc---hheeeeeeccCCCeEEEEEccccc
Confidence 1122445555543 4444444332 46999999999976665555543
Q ss_pred --ceEEeee
Q 039302 462 --FNILMPS 468 (479)
Q Consensus 462 --i~iw~~~ 468 (479)
+.+|.+.
T Consensus 470 ~tvsfY~~e 478 (698)
T KOG2314|consen 470 NTVSFYAVE 478 (698)
T ss_pred cceeEEEee
Confidence 7788776
No 308
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.34 E-value=0.00016 Score=77.03 Aligned_cols=204 Identities=17% Similarity=0.312 Sum_probs=126.4
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
+.|.++.|..+...++ .+...|.|.+-|..+. .+.....-...|.+++|+|+.. .+
T Consensus 69 ~~i~s~~fl~d~~~i~-v~~~~G~iilvd~et~----------------------~~eivg~vd~GI~aaswS~Dee-~l 124 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSIC-VITALGDIILVDPETL----------------------ELEIVGNVDNGISAASWSPDEE-LL 124 (1265)
T ss_pred cceEEEEEecccceEE-EEecCCcEEEEccccc----------------------ceeeeeeccCceEEEeecCCCc-EE
Confidence 5688888888874444 4578899999877662 2222222345899999999998 88
Q ss_pred EEEeCCCeEEEEec----CCCCc---------------cccCCCCcccC---------------------CCcEEEEEEC
Q 039302 250 VSGDCNSCIHLWEP----ASDAT---------------WNVDPNPFIGH---------------------AASVEDLQWS 289 (479)
Q Consensus 250 ~sg~~dg~I~lwd~----~~~~~---------------~~~~~~~~~~h---------------------~~~V~~l~~s 289 (479)
+..+..+++.+-.- -.... |......|.|. .+.=+.|.|-
T Consensus 125 ~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWR 204 (1265)
T KOG1920|consen 125 ALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWR 204 (1265)
T ss_pred EEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEc
Confidence 88887777766432 11000 11100111111 0112358999
Q ss_pred CCCCcEEEEEe----CC-CcEEEEEcCCCCceeeEE-ecCCCCEEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCCCC
Q 039302 290 PTESDVFASCS----VD-GNIAIWDTRVGKSALMSF-KAHNADVNVISWNRLASCLLASGS---DDGTFSIHDLRLLKGG 360 (479)
Q Consensus 290 p~~~~~l~s~s----~d-g~I~iwD~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs---~dg~i~iwDlr~~~~~ 360 (479)
-+|. +||+.. .+ +.|++||-. +. +... ......=.+++|-|.| .++|+-. .|+.|.+|.......
T Consensus 205 gDg~-~fAVs~~~~~~~~RkirV~drE-g~--Lns~se~~~~l~~~LsWkPsg-s~iA~iq~~~sd~~IvffErNGL~h- 278 (1265)
T KOG1920|consen 205 GDGE-YFAVSFVESETGTRKIRVYDRE-GA--LNSTSEPVEGLQHSLSWKPSG-SLIAAIQCKTSDSDIVFFERNGLRH- 278 (1265)
T ss_pred cCCc-EEEEEEEeccCCceeEEEeccc-ch--hhcccCcccccccceeecCCC-CeEeeeeecCCCCcEEEEecCCccc-
Confidence 9998 787732 23 799999987 32 1111 1222334689999988 7777743 455788887554432
Q ss_pred CceEEEeecCCCCeEEEEEeCCCCCEEEE---EeCCCcEEEEECCCC
Q 039302 361 DSVVAHFEYHKHPVTSIEWSPHEGSTLAV---SSADNQLTIWDLSLE 404 (479)
Q Consensus 361 ~~~~~~~~~h~~~I~~v~~sp~~~~~las---~s~Dg~I~iwdl~~~ 404 (479)
+.....+.....+|..++|+.++ .+||+ ......|.+|-+.+.
T Consensus 279 g~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 279 GEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCe
Confidence 22333344445569999999955 88887 555566999998875
No 309
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.34 E-value=0.00047 Score=66.44 Aligned_cols=198 Identities=14% Similarity=0.085 Sum_probs=111.1
Q ss_pred eeEEEEecCCCcEEEEE-eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 172 VNRIRAMSQNPHICASW-ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
-..++++|+|..++++- +.+..|.+.|+.. .+.+..+.- .+...-+..+... .+
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~---------------------~kvv~ei~v-p~~~~vy~t~e~~--~~- 161 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEG---------------------KAFVRMMDV-PDCYHIFPTANDT--FF- 161 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCC---------------------CcEEEEEeC-CCCcEEEEecCCc--cE-
Confidence 44678999996565543 3378999999987 344444432 1111122222211 11
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCc-ccC-----CCcEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCc----eeeE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPF-IGH-----AASVEDLQWSP-TESDVFASCSVDGNIAIWDTRVGKS----ALMS 319 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~-~~h-----~~~V~~l~~sp-~~~~~l~s~s~dg~I~iwD~~~~~~----~~~~ 319 (479)
+-+.||......+.+.+........+ .+. ..+ .|.+ ++. .+.+... |+|.+.|+..... +...
T Consensus 162 ~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP----~~~~~dg~-~~~vs~e-G~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 162 MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHP----AYSNKSGR-LVWPTYT-GKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred EEeecCceEEEEecCCCceEEeeeeeecCCccccccCC----ceEcCCCc-EEEEecC-CeEEEEecCCCcceecceeee
Confidence 22234444443333322211111111 110 112 3455 676 4444443 9999999654321 1211
Q ss_pred Ee-------cCCCCEEEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 320 FK-------AHNADVNVISWNRLASCLLASGS---------DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 320 ~~-------~h~~~v~~l~~~p~~~~~l~sgs---------~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
+. -......-+++++++..+++... ..+.|.++|..+.+ .+..+.. ...+..|+++|++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k----vi~~i~v-G~~~~~iavS~Dg 310 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK----RLRKIEL-GHEIDSINVSQDA 310 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe----EEEEEeC-CCceeeEEECCCC
Confidence 11 12344556999999955555331 12589999999988 6777664 5688999999977
Q ss_pred CCEEEEEe-CCCcEEEEECCCCC
Q 039302 384 GSTLAVSS-ADNQLTIWDLSLEK 405 (479)
Q Consensus 384 ~~~las~s-~Dg~I~iwdl~~~~ 405 (479)
..+|++.. .++.|.++|..+.+
T Consensus 311 kp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 311 KPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CeEEEEeCCCCCcEEEEECcCCe
Confidence 52666555 68899999998774
No 310
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.31 E-value=4.7e-07 Score=92.25 Aligned_cols=162 Identities=15% Similarity=0.207 Sum_probs=119.6
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
.++..+|..|...-+|++|+-..+ .|+.|+..|.|+++++.++.. ...+.+|.++|+-+.-+.+|...|.+++..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~----e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSM----EESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred cccchhhhccccceeeEEeecCCc-eEEeeeccceEEEEEccCccc----cccccccccccccccccCCcceeeeecccc
Confidence 456677888888999999999887 999999999999999988765 356889999999999999998555555544
Q ss_pred C-cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE-ee---cCCCCeEEE
Q 039302 303 G-NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH-FE---YHKHPVTSI 377 (479)
Q Consensus 303 g-~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~-~~---~h~~~I~~v 377 (479)
. ...+|++.....+..++.. -.++.|+... ..-+.|..-....|||+.+.. ++.+ +. +....-+.+
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~-q~r~~gt~~d~a~~YDvqT~~----~l~tylt~~~~~~y~~n~a 1236 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDE----DKAVKFSNSL-QFRALGTEADDALLYDVQTCS----PLQTYLTDTVTSSYSNNLA 1236 (1516)
T ss_pred CchHHHhccccccCccccccc----cceeehhhhH-HHHHhcccccceEEEecccCc----HHHHhcCcchhhhhhcccc
Confidence 4 5789998875445555542 4677888765 444556665678999999987 4443 22 223334778
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.|+|.+ .++. .||. +||.+..
T Consensus 1237 ~FsP~D-~LIl---ndGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1237 HFSPCD-TLIL---NDGV--LWDVRIP 1257 (1516)
T ss_pred ccCCCc-ceEe---eCce--eeeeccH
Confidence 999976 5554 3553 6999886
No 311
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.30 E-value=0.00016 Score=69.47 Aligned_cols=167 Identities=12% Similarity=0.082 Sum_probs=120.4
Q ss_pred CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCC-eEEE
Q 039302 182 PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNS-CIHL 260 (479)
Q Consensus 182 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg-~I~l 260 (479)
..++|..|. |.+.|.+... .....+ +|.+.|.-..+..+++ -++.|..|| .+-|
T Consensus 332 Gd~ia~VSR-GkaFi~~~~~----------------------~~~iqv-~~~~~VrY~r~~~~~e-~~vigt~dgD~l~i 386 (668)
T COG4946 332 GDYIALVSR-GKAFIMRPWD----------------------GYSIQV-GKKGGVRYRRIQVDPE-GDVIGTNDGDKLGI 386 (668)
T ss_pred CcEEEEEec-CcEEEECCCC----------------------CeeEEc-CCCCceEEEEEccCCc-ceEEeccCCceEEE
Confidence 356666554 6777776654 122222 5667788888888887 899999999 9999
Q ss_pred EecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEE
Q 039302 261 WEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLL 340 (479)
Q Consensus 261 wd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l 340 (479)
+|..++.. ..+...-+.|.++..+|+|+ .++.+.....|.+.|+.+++ ....-+...+-|+.+.|+|++ .+|
T Consensus 387 yd~~~~e~-----kr~e~~lg~I~av~vs~dGK-~~vvaNdr~el~vididngn-v~~idkS~~~lItdf~~~~ns-r~i 458 (668)
T COG4946 387 YDKDGGEV-----KRIEKDLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGN-VRLIDKSEYGLITDFDWHPNS-RWI 458 (668)
T ss_pred EecCCceE-----EEeeCCccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCC-eeEecccccceeEEEEEcCCc-eeE
Confidence 99987653 33555668899999999999 88888888999999999986 333334556779999999999 899
Q ss_pred EEEeCCC----eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 341 ASGSDDG----TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 341 ~sgs~dg----~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
|-+--+| .|+++|+...+ +.......+.=.+-+|.|++ ++|
T Consensus 459 AYafP~gy~tq~Iklydm~~~K-----iy~vTT~ta~DfsPaFD~d~-ryL 503 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGGK-----IYDVTTPTAYDFSPAFDPDG-RYL 503 (668)
T ss_pred EEecCcceeeeeEEEEecCCCe-----EEEecCCcccccCcccCCCC-cEE
Confidence 9887776 68999998776 22222223333455677754 443
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.00022 Score=73.44 Aligned_cols=198 Identities=9% Similarity=0.016 Sum_probs=130.6
Q ss_pred EecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCC
Q 039302 177 AMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNS 256 (479)
Q Consensus 177 ~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg 256 (479)
|++.+ ..+|.|+.+|.|.+.+-.- +.+..|+.+...+...-|.-++.++|++.+.|+
T Consensus 31 ~~s~~-~~vvigt~~G~V~~Ln~s~----------------------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~ 87 (933)
T KOG2114|consen 31 CSSST-GSVVIGTADGRVVILNSSF----------------------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDE 87 (933)
T ss_pred EcCCC-ceEEEeeccccEEEecccc----------------------eeeehheecchhhhhHhhcccCceEEEEEeecC
Confidence 34444 7888999999998887553 444556666665444445555545888876665
Q ss_pred -----eEEEEecCCCCccc---c------CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc---CCCCceeeE
Q 039302 257 -----CIHLWEPASDATWN---V------DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT---RVGKSALMS 319 (479)
Q Consensus 257 -----~I~lwd~~~~~~~~---~------~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~---~~~~~~~~~ 319 (479)
.|+||++....... . ....+.....++.+++.+.+-. .+|.|-.+|.|..+.- |........
T Consensus 88 ~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~ 166 (933)
T KOG2114|consen 88 QGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDY 166 (933)
T ss_pred CCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceee
Confidence 48999997642211 0 0011222456788999998866 8899999999998853 222212222
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
......+|+.+.+..++...+.++. -..|.+|.+.... .....+..|+.++.|..+++.. ..|++++ ...|.+|
T Consensus 167 ~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~---p~~~~ld~~G~~lnCss~~~~t-~qfIca~-~e~l~fY 240 (933)
T KOG2114|consen 167 SHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRT---PSLKVLDNNGISLNCSSFSDGT-YQFICAG-SEFLYFY 240 (933)
T ss_pred eccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCC---cceeeeccCCccceeeecCCCC-ccEEEec-CceEEEE
Confidence 2445678999999988855344333 4579999998433 2455688899999999999854 4344443 4579999
Q ss_pred ECCCC
Q 039302 400 DLSLE 404 (479)
Q Consensus 400 dl~~~ 404 (479)
+....
T Consensus 241 ~sd~~ 245 (933)
T KOG2114|consen 241 DSDGR 245 (933)
T ss_pred cCCCc
Confidence 98754
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.30 E-value=0.0013 Score=61.38 Aligned_cols=233 Identities=16% Similarity=0.168 Sum_probs=139.9
Q ss_pred cceeEEEEecCCCcEEEEEeCCce-EEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 170 GCVNRIRAMSQNPHICASWADTGH-VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.....++.+|..+..+|.+-.-|+ ..+||..+..... .....+-..|.||. .|++++. +
T Consensus 5 ~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~-------------~~~a~~gRHFyGHg------~fs~dG~-~ 64 (305)
T PF07433_consen 5 ARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQ-------------RLWAPPGRHFYGHG------VFSPDGR-L 64 (305)
T ss_pred ccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceee-------------EEcCCCCCEEecCE------EEcCCCC-E
Confidence 345567888877678888777776 5788887621100 00123334566664 6999998 7
Q ss_pred EEEE-----eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-----------------CCCcEE
Q 039302 249 LVSG-----DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-----------------VDGNIA 306 (479)
Q Consensus 249 l~sg-----~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-----------------~dg~I~ 306 (479)
|++. ...|.|-|||.... ... ...+..|.-.-..+.+.|+++++++.-+ .+-.|.
T Consensus 65 LytTEnd~~~g~G~IgVyd~~~~-~~r--i~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~ 141 (305)
T PF07433_consen 65 LYTTENDYETGRGVIGVYDAARG-YRR--IGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLV 141 (305)
T ss_pred EEEeccccCCCcEEEEEEECcCC-cEE--EeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceE
Confidence 7775 34579999999732 211 2446666666678899999973433321 123345
Q ss_pred EEEcCCCCceeeE--E--ecCCCCEEEEEEcCCCCcEEEEEeCCC-------eEEEEeCCCCCCCCceEEEe-------e
Q 039302 307 IWDTRVGKSALMS--F--KAHNADVNVISWNRLASCLLASGSDDG-------TFSIHDLRLLKGGDSVVAHF-------E 368 (479)
Q Consensus 307 iwD~~~~~~~~~~--~--~~h~~~v~~l~~~p~~~~~l~sgs~dg-------~i~iwDlr~~~~~~~~~~~~-------~ 368 (479)
+.|.+++. .+.. + .-|...|..+++++++ ..++..-..| .|-+++... .+..+ .
T Consensus 142 ~ld~~sG~-ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~------~~~~~~~p~~~~~ 213 (305)
T PF07433_consen 142 YLDARSGA-LLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGG------ALRLLPAPEEQWR 213 (305)
T ss_pred EEecCCCc-eeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCC------cceeccCChHHHH
Confidence 55556554 2322 2 3366778888898887 4433332222 233333322 11111 1
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeC
Q 039302 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHT 448 (479)
Q Consensus 369 ~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p 448 (479)
.-.+.|-+|++++++..+.+|+=.-+++.+||..+.. ++-.+. -..+..++-.+
T Consensus 214 ~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~-------------------------~~~~~~-l~D~cGva~~~ 267 (305)
T PF07433_consen 214 RLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR-------------------------LLGSVP-LPDACGVAPTD 267 (305)
T ss_pred hhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC-------------------------Eeeccc-cCceeeeeecC
Confidence 2346789999999664455666668899999998873 233222 23577777777
Q ss_pred CCCcEEEEEcCCC
Q 039302 449 QVPGMIVSTAADG 461 (479)
Q Consensus 449 ~~~~ll~s~~~dg 461 (479)
++ +++|++.+.
T Consensus 268 ~~--f~~ssG~G~ 278 (305)
T PF07433_consen 268 DG--FLVSSGQGQ 278 (305)
T ss_pred Cc--eEEeCCCcc
Confidence 65 777777773
No 314
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=5.6e-05 Score=77.06 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=107.2
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
...++|++++. ..|+-|..+|.|++++..... .....|... .-.|. +++|||.||+|.|..+-+
T Consensus 39 ~D~is~~av~~---~~~~~GtH~g~v~~~~~~~~~------~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~ 102 (846)
T KOG2066|consen 39 NDAISCCAVHD---KFFALGTHRGAVYLTTCQGNP------KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFT 102 (846)
T ss_pred hhHHHHHHhhc---ceeeeccccceEEEEecCCcc------ccccccccc------ccCCc-eEEEecCCCcEEEeeccC
Confidence 34566777764 289999999999999875421 223344443 45677 999999999999999888
Q ss_pred CCceeeEEecCCCCEEEEEEcCC----CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 313 GKSALMSFKAHNADVNVISWNRL----ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~----~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
.+. ..++ ....++.+|+++|+ ....+++||.-| +.++.-+-... ...+ .+..-.++|.++.|. ++++|
T Consensus 103 ~~~-~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgn-k~~v-~l~~~eG~I~~i~W~---g~lIA 174 (846)
T KOG2066|consen 103 DDE-ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGN-KDSV-VLSEGEGPIHSIKWR---GNLIA 174 (846)
T ss_pred Ccc-ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcC-ccce-eeecCccceEEEEec---CcEEE
Confidence 753 2222 24568999999998 246899999999 88877665443 1122 355567899999997 38888
Q ss_pred EEeCCCcEEEEECCCCC
Q 039302 389 VSSADNQLTIWDLSLEK 405 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~~~ 405 (479)
-++.+| |+|||+...+
T Consensus 175 Wand~G-v~vyd~~~~~ 190 (846)
T KOG2066|consen 175 WANDDG-VKVYDTPTRQ 190 (846)
T ss_pred EecCCC-cEEEeccccc
Confidence 887666 8999998875
No 315
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.28 E-value=3.5e-05 Score=76.32 Aligned_cols=117 Identities=18% Similarity=0.264 Sum_probs=83.9
Q ss_pred ceEEEEeCCCCCCeEEEE----eCCCe----EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEE
Q 039302 235 EGYAIDWNPVAPGRLVSG----DCNSC----IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIA 306 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg----~~dg~----I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~ 306 (479)
...++.|+...+..+.|. +.+|. -++|++...+...+ ...-....+.|.+++++|++. .|+.|+.||+|.
T Consensus 207 dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrv-svtsipL~s~v~~ca~sp~E~-kLvlGC~DgSii 284 (545)
T PF11768_consen 207 DPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRV-SVTSIPLPSQVICCARSPSED-KLVLGCEDGSII 284 (545)
T ss_pred CcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEE-EEEEEecCCcceEEecCcccc-eEEEEecCCeEE
Confidence 446778887665556553 23443 35677655333221 112234677899999999999 999999999999
Q ss_pred EEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 307 IWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 307 iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
+||...+. .......-..+.++|+|+| .++++|+..|.+.+||+.-.
T Consensus 285 LyD~~~~~---t~~~ka~~~P~~iaWHp~g-ai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGV---TLLAKAEFIPTLIAWHPDG-AIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCe---eeeeeecccceEEEEcCCC-cEEEEEcCCceEEEEEeecC
Confidence 99998763 2222344567899999999 89999999999999998644
No 316
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.24 E-value=0.00059 Score=63.28 Aligned_cols=185 Identities=13% Similarity=0.163 Sum_probs=117.2
Q ss_pred eeEEEEe-cCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--C-CCCceEEEEeCCCCCC
Q 039302 172 VNRIRAM-SQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--G-HKDEGYAIDWNPVAPG 247 (479)
Q Consensus 172 V~~v~~~-p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-h~~~v~~l~~s~~~~~ 247 (479)
.+.+.+. +++ .++++ .. +.+.++|.... ..+.+.... . .....+.+++.++|.
T Consensus 42 ~~G~~~~~~~g-~l~v~-~~-~~~~~~d~~~g-------------------~~~~~~~~~~~~~~~~~~ND~~vd~~G~- 98 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVA-DS-GGIAVVDPDTG-------------------KVTVLADLPDGGVPFNRPNDVAVDPDGN- 98 (246)
T ss_dssp EEEEEEECTTS-EEEEE-ET-TCEEEEETTTT-------------------EEEEEEEEETTCSCTEEEEEEEE-TTS--
T ss_pred CceEEEEccCC-EEEEE-Ec-CceEEEecCCC-------------------cEEEEeeccCCCcccCCCceEEEcCCCC-
Confidence 7777777 565 66655 44 44566687662 122333332 1 234788999999987
Q ss_pred eEEEEeCC--------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee--
Q 039302 248 RLVSGDCN--------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL-- 317 (479)
Q Consensus 248 ~l~sg~~d--------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~-- 317 (479)
+.++.... |.|..++.. +.. . .....-...+.|+|+|+++.++++-+..+.|..+++......+
T Consensus 99 ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-~----~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~ 172 (246)
T PF08450_consen 99 LYVTDSGGGGASGIDPGSVYRIDPD-GKV-T----VVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN 172 (246)
T ss_dssp EEEEEECCBCTTCGGSEEEEEEETT-SEE-E----EEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred EEEEecCCCccccccccceEEECCC-CeE-E----EEecCcccccceEECCcchheeecccccceeEEEeccccccceee
Confidence 66665543 456666665 222 1 1222244578999999998666778888999999997543211
Q ss_pred -eEE---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe-CCCCCEEEEEe
Q 039302 318 -MSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS-PHEGSTLAVSS 391 (479)
Q Consensus 318 -~~~---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s-p~~~~~las~s 391 (479)
..+ .........+++..++ ++.++....+.|.++|.. ++ .+..+......+++++|. |+...+++|.+
T Consensus 173 ~~~~~~~~~~~g~pDG~~vD~~G-~l~va~~~~~~I~~~~p~-G~----~~~~i~~p~~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 173 RRVFIDFPGGPGYPDGLAVDSDG-NLWVADWGGGRIVVFDPD-GK----LLREIELPVPRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp EEEEEE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SC----EEEEEE-SSSSEEEEEEESTTSSEEEEEEB
T ss_pred eeeEEEcCCCCcCCCcceEcCCC-CEEEEEcCCCEEEEECCC-cc----EEEEEcCCCCCEEEEEEECCCCCEEEEEeC
Confidence 112 2222247889999998 888888889999999988 55 677676655689999995 54445555543
No 317
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.6e-05 Score=75.62 Aligned_cols=220 Identities=11% Similarity=0.051 Sum_probs=140.9
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCC-CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-CCcEEEE
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPAS-DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-DGNIAIW 308 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~-~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-dg~I~iw 308 (479)
-|.+.|+.+.-... .++.+++.||.++.|.... .+... ...+..|.+.|.+++.+-++. +++|.+. |..++++
T Consensus 7 mhrd~i~hv~~tka--~fiiqASlDGh~KFWkKs~isGvEf--VKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTKA--KFIIQASLDGHKKFWKKSRISGVEF--VKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeehh--heEEeeecchhhhhcCCCCccceee--hhhhHHHHHHHHhhhccccce-eEeeccCcccceeEE
Confidence 37777777765543 3999999999999998754 22211 345778899999999999998 8999777 9999999
Q ss_pred EcCCCCce-eeEEecCCCCEEEEEEcCCC-CcEEE-EEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCC
Q 039302 309 DTRVGKSA-LMSFKAHNADVNVISWNRLA-SCLLA-SGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 309 D~~~~~~~-~~~~~~h~~~v~~l~~~p~~-~~~l~-sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 385 (479)
|+..-... ...+.--.+.+.. ..++.. -.+|+ +.-.+|.+.|+|-+.... +....-.-|..+|..+.++|.+ .
T Consensus 82 DvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~--q~~~fkklH~sPV~~i~y~qa~-D 157 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFC--QDGYFKKLHFSPVKKIRYNQAG-D 157 (558)
T ss_pred EeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcC--ccceecccccCceEEEEeeccc-c
Confidence 99876421 2222222222221 112211 11343 444678999999887663 2444555699999999999965 7
Q ss_pred EEEEEeCCCcEEEEECCCC-CChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ce
Q 039302 386 TLAVSSADNQLTIWDLSLE-KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FN 463 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~ 463 (479)
.+++....|.|..|..... +.+.. ..........-++-.-......+++.|+|.+. -+...+.|. |+
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~----------~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~-qistl~~DrkVR 226 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRT----------NLNFELKHETDLYGFPKAKTEPTSFEFSPDGA-QISTLNPDRKVR 226 (558)
T ss_pred ceeeccccceeEeecCCCcccCccc----------cccccccccchhhcccccccCccceEEccccC-cccccCcccEEE
Confidence 8888888899999998741 11100 00000011111222222234588999999985 566666776 77
Q ss_pred EEeeecc
Q 039302 464 ILMPSNI 470 (479)
Q Consensus 464 iw~~~~~ 470 (479)
++.+...
T Consensus 227 ~F~~KtG 233 (558)
T KOG0882|consen 227 GFVFKTG 233 (558)
T ss_pred EEEeccc
Confidence 7766543
No 318
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.13 E-value=5.5e-05 Score=74.97 Aligned_cols=75 Identities=17% Similarity=0.284 Sum_probs=62.6
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
.....+.+++++|+.. .|+.|+.||+|.+||...+-. .+....-.++.++|+|+|. +|++|+..|.|.+||+
T Consensus 257 pL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t------~~~ka~~~P~~iaWHp~ga-i~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 257 PLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVT------LLAKAEFIPTLIAWHPDGA-IFVVGSEQGELQCFDM 328 (545)
T ss_pred ecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCee------eeeeecccceEEEEcCCCc-EEEEEcCCceEEEEEe
Confidence 3567899999999998 999999999999999876422 1223345678999999999 9999999999999998
Q ss_pred CCC
Q 039302 311 RVG 313 (479)
Q Consensus 311 ~~~ 313 (479)
--.
T Consensus 329 ALs 331 (545)
T PF11768_consen 329 ALS 331 (545)
T ss_pred ecC
Confidence 654
No 319
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.10 E-value=0.0013 Score=70.33 Aligned_cols=155 Identities=17% Similarity=0.337 Sum_probs=97.5
Q ss_pred EEEEeCCCCCCeEEE-----EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe---CCCcEEEE
Q 039302 237 YAIDWNPVAPGRLVS-----GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS---VDGNIAIW 308 (479)
Q Consensus 237 ~~l~~s~~~~~~l~s-----g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s---~dg~I~iw 308 (479)
..+.|--+|. ++|+ ...-..|++||-. +.. .....+ ..+-=.+++|-|.|. ++++-. .|+.|.+|
T Consensus 199 ~~IsWRgDg~-~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~---~~~l~~~LsWkPsgs-~iA~iq~~~sd~~Ivff 271 (1265)
T KOG1920|consen 199 TSISWRGDGE-YFAVSFVESETGTRKIRVYDRE-GAL-NSTSEP---VEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFF 271 (1265)
T ss_pred ceEEEccCCc-EEEEEEEeccCCceeEEEeccc-chh-hcccCc---ccccccceeecCCCC-eEeeeeecCCCCcEEEE
Confidence 3589999987 7777 2323799999976 222 110111 122335789999888 777753 45678888
Q ss_pred EcCCCCc--eeeEEecCCCCEEEEEEcCCCCcEEEE---EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 309 DTRVGKS--ALMSFKAHNADVNVISWNRLASCLLAS---GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 309 D~~~~~~--~~~~~~~h~~~v~~l~~~p~~~~~l~s---gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
.-+.... -...+......|..++|+.++ .+||+ ......|++|-+.+.. +..-..+....... +.|+|..
T Consensus 272 ErNGL~hg~f~l~~p~de~~ve~L~Wns~s-diLAv~~~~~e~~~v~lwt~~Nyh--WYLKq~l~~~~~~~--~~W~p~~ 346 (1265)
T KOG1920|consen 272 ERNGLRHGEFVLPFPLDEKEVEELAWNSNS-DILAVVTSNLENSLVQLWTTGNYH--WYLKQELQFSQKAL--LMWDPVT 346 (1265)
T ss_pred ecCCccccccccCCcccccchheeeecCCC-CceeeeecccccceEEEEEecCeE--EEEEEEEecccccc--ccccCCC
Confidence 6544321 112223334458999999998 78887 5555569999988766 22233333333333 8888866
Q ss_pred CCEEEEEeCCCcEEEEECCC
Q 039302 384 GSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~ 403 (479)
...|..-..+|.+.++++.-
T Consensus 347 ~~~L~v~~~sG~~~v~~~~~ 366 (1265)
T KOG1920|consen 347 EKTLHVLRESGQRLVRDFAW 366 (1265)
T ss_pred ceeEEEEecCCcEEEEEEEE
Confidence 66676666778777766643
No 320
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.06 E-value=0.00031 Score=74.02 Aligned_cols=137 Identities=14% Similarity=0.119 Sum_probs=87.8
Q ss_pred eCCCeEEEEecCCCCccccCCCCcccCC-CcEEEEEECC-----CCCcEEEEEeCCCcEEEEEcCCCCceeeEE----ec
Q 039302 253 DCNSCIHLWEPASDATWNVDPNPFIGHA-ASVEDLQWSP-----TESDVFASCSVDGNIAIWDTRVGKSALMSF----KA 322 (479)
Q Consensus 253 ~~dg~I~lwd~~~~~~~~~~~~~~~~h~-~~V~~l~~sp-----~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~----~~ 322 (479)
.....|+-.|+..++.. ..+..|. .+|.+++-.. +.. .-+.|-.+..|..||.|.....+..- ..
T Consensus 501 ~~~~~ly~mDLe~GKVV----~eW~~~~~~~v~~~~p~~K~aqlt~e-~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~ 575 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVV----EEWKVHDDIPVVDIAPDSKFAQLTNE-QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYS 575 (794)
T ss_pred CCCCceEEEecCCCcEE----EEeecCCCcceeEecccccccccCCC-ceEEEECCCceEEeccCCCCCceeeccccccc
Confidence 34567788888776541 2233333 2355543221 112 34556668889999999764222211 23
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
.....+|++-..+| +||+|+.+|.||+||- .+.. .-..+.+-..||..|..+.++ .+|++.| +..|.+++..
T Consensus 576 ~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~-~g~~---AKT~lp~lG~pI~~iDvt~DG-kwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 576 SKNNFSCFATTEDG--YIAVGSNKGDIRLYDR-LGKR---AKTALPGLGDPIIGIDVTADG-KWILATC-KTYLLLIDTL 647 (794)
T ss_pred cCCCceEEEecCCc--eEEEEeCCCcEEeecc-cchh---hhhcCCCCCCCeeEEEecCCC-cEEEEee-cceEEEEEEe
Confidence 45567888888777 8999999999999994 3332 445567778999999999976 5554444 5567777764
No 321
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.05 E-value=0.00022 Score=73.12 Aligned_cols=71 Identities=15% Similarity=0.200 Sum_probs=60.5
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.+++++|+|.. .+||.|-.-|.+.+|..+. .+.......|..+|..+.||++|. .|+
T Consensus 61 hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~---------------------~e~htv~~th~a~i~~l~wS~~G~-~l~ 117 (1416)
T KOG3617|consen 61 HATSLCWHPEE-FVLAQGWEMGVSDVQKTNT---------------------TETHTVVETHPAPIQGLDWSHDGT-VLM 117 (1416)
T ss_pred ehhhhccChHH-HHHhhccccceeEEEecCC---------------------ceeeeeccCCCCCceeEEecCCCC-eEE
Confidence 45669999987 8899999999999999877 333334457899999999999998 999
Q ss_pred EEeCCCeEEEEecC
Q 039302 251 SGDCNSCIHLWEPA 264 (479)
Q Consensus 251 sg~~dg~I~lwd~~ 264 (479)
|+..=|.+.+|...
T Consensus 118 t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 118 TLDNPGSVHLWRYD 131 (1416)
T ss_pred EcCCCceeEEEEee
Confidence 99999999999875
No 322
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.00024 Score=72.85 Aligned_cols=256 Identities=13% Similarity=0.126 Sum_probs=142.9
Q ss_pred EEEecCCCcEEEEEeC----CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 175 IRAMSQNPHICASWAD----TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 175 v~~~p~~~~~lat~s~----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
..|+|..| ++|.++. .|.|.||--... .+.-.+..- .+.+++|+|..- .|+
T Consensus 21 ~SWHPseP-lfAVA~fS~er~GSVtIfadtGE--------------------Pqr~Vt~P~---hatSLCWHpe~~-vLa 75 (1416)
T KOG3617|consen 21 SSWHPSEP-LFAVASFSPERGGSVTIFADTGE--------------------PQRDVTYPV---HATSLCWHPEEF-VLA 75 (1416)
T ss_pred cccCCCCc-eeEEEEecCCCCceEEEEecCCC--------------------CCcccccce---ehhhhccChHHH-HHh
Confidence 47888774 6666553 588888854431 111112222 345699999886 899
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEecCC--CCE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFKAHN--ADV 327 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~~h~--~~v 327 (479)
+|-.-|.+.+|..++.... .....|+.+|..+.||++|. .++++..-|.|.+|....... ....+..|. ..+
T Consensus 76 ~gwe~g~~~v~~~~~~e~h----tv~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l 150 (1416)
T KOG3617|consen 76 QGWEMGVSDVQKTNTTETH----TVVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL 150 (1416)
T ss_pred hccccceeEEEecCCceee----eeccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence 9999999999998775442 23456899999999999999 999999999999997652210 000000010 001
Q ss_pred E--------------------------EEE----E-------------cCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE
Q 039302 328 N--------------------------VIS----W-------------NRLASCLLASGSDDGTFSIHDLRLLKGGDSVV 364 (479)
Q Consensus 328 ~--------------------------~l~----~-------------~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~ 364 (479)
+ .+. | .|.| ..++.++.+|+|+-.|-.... .
T Consensus 151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g-~~F~~~~~~GtVyyvdq~g~~-----~ 224 (1416)
T KOG3617|consen 151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKG-TEFLFAGKSGTVYYVDQNGRQ-----R 224 (1416)
T ss_pred eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCC-cEEEEEcCCceEEEEcCCCcE-----E
Confidence 1 111 1 1233 566666777777666543221 2
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhh--hccccc---C---CCCCCCCceEEeec
Q 039302 365 AHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKA--KTREQV---N---APEDLPPQLLFIHQ 436 (479)
Q Consensus 365 ~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~--~~~~~~---~---~~~~~p~~l~~~h~ 436 (479)
...+. +.-..+-|.+.. ..++..-.+-++.++-.......++....+. +..... . ...-+.+...+...
T Consensus 225 ~V~k~--dS~vQmLf~~~~-eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e 301 (1416)
T KOG3617|consen 225 TVHKL--DSEVQMLFMGYC-EAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLE 301 (1416)
T ss_pred EEEEc--cchHHHHHhccc-ceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhh
Confidence 22221 111334566643 4444455566666655544443333322222 111110 0 01112222233333
Q ss_pred CCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 437 GQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 437 g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
....+++++++..+..+.+.+..+++.+|+-.+
T Consensus 302 ~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~ 334 (1416)
T KOG3617|consen 302 LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVN 334 (1416)
T ss_pred cCCceEEEEEeccceEEEecccCCcEEEeeecC
Confidence 335699999999886555555555589997544
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.00089 Score=69.12 Aligned_cols=198 Identities=13% Similarity=0.150 Sum_probs=121.4
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-----cEEEEEcCCCC
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG-----NIAIWDTRVGK 314 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg-----~I~iwD~~~~~ 314 (479)
.|++.+. .++.|+.+|.|.+.+-.- .. ...+..+...+...-|.-++.++|++.+.|+ .|+|||+....
T Consensus 30 c~~s~~~-~vvigt~~G~V~~Ln~s~--~~---~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~ 103 (933)
T KOG2114|consen 30 CCSSSTG-SVVIGTADGRVVILNSSF--QL---IRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVD 103 (933)
T ss_pred EEcCCCc-eEEEeeccccEEEecccc--ee---eehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccC
Confidence 3566554 999999999998887432 11 1446666666333334445545777777665 49999987541
Q ss_pred -----cee--eEEec-----CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 315 -----SAL--MSFKA-----HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 315 -----~~~--~~~~~-----h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.++ ..+.. ...++.+++.+.+- ..+|.|-.+|.|..+.-.-.+.......-...-..+||.+.+.-+
T Consensus 104 ~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l-~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d 182 (933)
T KOG2114|consen 104 KNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDL-KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSD 182 (933)
T ss_pred CCCCcceeeeeeeeccCCCCCCCcceEEEEEccc-cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecC
Confidence 122 12222 24578889999887 899999999999988643222111122222234679999999876
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
+...+.++ .-..|.+|.+.... | .+ ..+..+ .++.+..+++..+ -++.++...
T Consensus 183 ~~s~lFv~-Tt~~V~~y~l~gr~----------------------p-~~-~~ld~~G~~lnCss~~~~t~-qfIca~~e~ 236 (933)
T KOG2114|consen 183 GKSVLFVA-TTEQVMLYSLSGRT----------------------P-SL-KVLDNNGISLNCSSFSDGTY-QFICAGSEF 236 (933)
T ss_pred CceeEEEE-ecceeEEEEecCCC----------------------c-ce-eeeccCCccceeeecCCCCc-cEEEecCce
Confidence 54433333 35679999998331 1 11 212222 4688888887664 345555566
Q ss_pred ceEEeeecc
Q 039302 462 FNILMPSNI 470 (479)
Q Consensus 462 i~iw~~~~~ 470 (479)
+.+|+....
T Consensus 237 l~fY~sd~~ 245 (933)
T KOG2114|consen 237 LYFYDSDGR 245 (933)
T ss_pred EEEEcCCCc
Confidence 777776544
No 324
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.96 E-value=0.0017 Score=60.66 Aligned_cols=186 Identities=14% Similarity=0.126 Sum_probs=113.4
Q ss_pred EEEecCCCcEEEEE----eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 175 IRAMSQNPHICASW----ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 175 v~~~p~~~~~lat~----s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
..|+++|..+++|= +..|.|-|||... ..+.+..|..|.-.-..|.|.|+++ .|+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~--------------------~~~ri~E~~s~GIGPHel~l~pDG~-tLv 114 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR--------------------GYRRIGEFPSHGIGPHELLLMPDGE-TLV 114 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcC--------------------CcEEEeEecCCCcChhhEEEcCCCC-EEE
Confidence 37999996666652 3458999999985 2455667777776667788999987 666
Q ss_pred EEe------------------CCCeEEEEecCCCCccccCCCCc--ccCCCcEEEEEECCCCCcEEEEEeCCCc------
Q 039302 251 SGD------------------CNSCIHLWEPASDATWNVDPNPF--IGHAASVEDLQWSPTESDVFASCSVDGN------ 304 (479)
Q Consensus 251 sg~------------------~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~dg~------ 304 (479)
.+. .+.++.+-|..++.... ...+ .-|.-+|..+++.++|. +++.+-..|.
T Consensus 115 VANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~--q~~Lp~~~~~lSiRHLa~~~~G~-V~~a~Q~qg~~~~~~P 191 (305)
T PF07433_consen 115 VANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLE--QVELPPDLHQLSIRHLAVDGDGT-VAFAMQYQGDPGDAPP 191 (305)
T ss_pred EEcCCCccCcccCceecChhhcCCceEEEecCCCceee--eeecCccccccceeeEEecCCCc-EEEEEecCCCCCccCC
Confidence 552 11223333333333211 1223 44777899999999987 4444433222
Q ss_pred -EEEEEcCCCCceeeEE-------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 305 -IAIWDTRVGKSALMSF-------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 305 -I~iwD~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
|-+++-... +..+ ..-...+-+|++++++..+.+|+-.-|.+.+||..++. .+.... -..+..
T Consensus 192 Lva~~~~g~~---~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~----~~~~~~--l~D~cG 262 (305)
T PF07433_consen 192 LVALHRRGGA---LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR----LLGSVP--LPDACG 262 (305)
T ss_pred eEEEEcCCCc---ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC----Eeeccc--cCceee
Confidence 333332221 1111 23456799999999985566777778899999999987 454443 234556
Q ss_pred EEEeCCCCCEEEEEeCCCcE
Q 039302 377 IEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I 396 (479)
++-.+. .+++|++ .|.+
T Consensus 263 va~~~~--~f~~ssG-~G~~ 279 (305)
T PF07433_consen 263 VAPTDD--GFLVSSG-QGQL 279 (305)
T ss_pred eeecCC--ceEEeCC-CccE
Confidence 666552 3555554 4543
No 325
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.95 E-value=0.011 Score=54.29 Aligned_cols=205 Identities=13% Similarity=0.115 Sum_probs=115.4
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-CCceEEEEeC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-KDEGYAIDWN 242 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s 242 (479)
.+.+-...+..|.|.|+...++|+....+.|..++.+. +.+.++.-. -+..-+|++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G----------------------~vlr~i~l~g~~D~EgI~y~ 73 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG----------------------KVLRRIPLDGFGDYEGITYL 73 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------------------EEEEEE-SS-SSEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC----------------------CEEEEEeCCCCCCceeEEEE
Confidence 34455677999999998878999989999988877653 333333222 2356788887
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCcc--c-----cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--C
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATW--N-----VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV--G 313 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~--~-----~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~--~ 313 (479)
.++. ++++--.++.+.++++...... . ........++..+..|+|+|.+. .|+.+-...-..||.++. .
T Consensus 74 g~~~-~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 74 GNGR-YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp STTE-EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-
T ss_pred CCCE-EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccC
Confidence 6654 5555446899999998443221 0 01111223566799999999988 444556666777777764 2
Q ss_pred CceeeE--E------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC---------CCeEE
Q 039302 314 KSALMS--F------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK---------HPVTS 376 (479)
Q Consensus 314 ~~~~~~--~------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~---------~~I~~ 376 (479)
...+.. . ......+.+++++|..+.+++....+..|.++| +.++ ++..+.-.. ..--.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~----~~~~~~L~~g~~gl~~~~~QpEG 226 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGR----VVSSLSLDRGFHGLSKDIPQPEG 226 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT------EEEEEE-STTGGG-SS---SEEE
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCC----EEEEEEeCCcccCcccccCCccE
Confidence 111111 1 123456899999999888999999999999999 5555 444443222 24578
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEE
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iw 399 (479)
|+|.+++ + |...|+-+..+++
T Consensus 227 Ia~d~~G-~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 227 IAFDPDG-N-LYIVSEPNLFYRF 247 (248)
T ss_dssp EEE-TT----EEEEETTTEEEEE
T ss_pred EEECCCC-C-EEEEcCCceEEEe
Confidence 9999854 4 4444566666654
No 326
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.93 E-value=0.00031 Score=70.86 Aligned_cols=142 Identities=12% Similarity=0.148 Sum_probs=95.5
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..|.--++...+ .+++.|++.|.|++|+-.... -......+-.+.+..+..++... ++
T Consensus 34 ~~v~lTc~dst~-~~l~~GsS~G~lyl~~R~~~~--------------------~~~~~~~~~~~~~~~~~vs~~e~-lv 91 (726)
T KOG3621|consen 34 ARVKLTCVDATE-EYLAMGSSAGSVYLYNRHTGE--------------------MRKLKNEGATGITCVRSVSSVEY-LV 91 (726)
T ss_pred ceEEEEEeecCC-ceEEEecccceEEEEecCchh--------------------hhcccccCccceEEEEEecchhH-hh
Confidence 334434444444 788999999999999987621 11222333344666777888887 89
Q ss_pred EEEeCCCeEEEEecCCCCccccC--CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC---ceeeEEecCC
Q 039302 250 VSGDCNSCIHLWEPASDATWNVD--PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK---SALMSFKAHN 324 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~---~~~~~~~~h~ 324 (479)
|.|+..|.|.++.++........ ...-..|...|++++|++++. .|.+|...|+|.+-.+.... ...+.+..-.
T Consensus 92 Aagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 92 AAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc-EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 99999999999998774331110 111234788999999999999 89999999999988877621 1233333445
Q ss_pred CCEEEEEEcC
Q 039302 325 ADVNVISWNR 334 (479)
Q Consensus 325 ~~v~~l~~~p 334 (479)
+.|-.+....
T Consensus 171 s~IVQlD~~q 180 (726)
T KOG3621|consen 171 SEIVQLDYLQ 180 (726)
T ss_pred cceEEeeccc
Confidence 6676666653
No 327
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00036 Score=70.45 Aligned_cols=149 Identities=13% Similarity=0.161 Sum_probs=102.9
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.+.--++..... +|+.|+.-|.+++|+-..+.... .+..+-.+.+..+..++.+. ++|.|+..|.|.++-+....
T Consensus 35 ~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~---~~~~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~ql~~~~ 109 (726)
T KOG3621|consen 35 RVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRK---LKNEGATGITCVRSVSSVEY-LVAAGTASGRVSVFQLNKEL 109 (726)
T ss_pred eEEEEEeecCCc-eEEEecccceEEEEecCchhhhc---ccccCccceEEEEEecchhH-hhhhhcCCceEEeehhhccC
Confidence 344444555565 99999999999999976654422 33334456667777888887 89999999999999887753
Q ss_pred ceeeEE-----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 315 SALMSF-----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 315 ~~~~~~-----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.+-..+ ..|...|++++|++++ ..+.+|...|.|..-.+............+-.-.+.|..+.... +.+|++
T Consensus 110 p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LLVS 186 (726)
T KOG3621|consen 110 PRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLLVS 186 (726)
T ss_pred CCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceehHh
Confidence 322222 3478899999999999 89999999999998887762111113334444467887777763 244444
Q ss_pred Ee
Q 039302 390 SS 391 (479)
Q Consensus 390 ~s 391 (479)
..
T Consensus 187 tl 188 (726)
T KOG3621|consen 187 TL 188 (726)
T ss_pred hh
Confidence 43
No 328
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.79 E-value=0.011 Score=58.31 Aligned_cols=267 Identities=11% Similarity=0.054 Sum_probs=134.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccc-c--cccccc----------CCCC--------Cc-cccCCCcEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNAL-A--ESETVA----------GHGA--------PQ-VLNQSPLVK 228 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~-~--~~~~~~----------~~~~--------~~-~~~~~~~~~ 228 (479)
.|+.+.|.+.. .-||.|...|.|-||.+....... . ...... .... .. .....|...
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999987 566777999999999886643322 0 000000 0000 00 011345555
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc-CCC---CcccCCCcEEEEEECC---CC----CcEEE
Q 039302 229 FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV-DPN---PFIGHAASVEDLQWSP---TE----SDVFA 297 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~-~~~---~~~~h~~~V~~l~~sp---~~----~~~l~ 297 (479)
+....++|++++.|.-| ++|.|..+|.+.|.|++....... ... .-......|+++.|.- .+ .-.++
T Consensus 82 ~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 66668899999998554 999999999999999965432110 000 1112345688888852 11 12688
Q ss_pred EEeCCCcEEEEEcCC-CCc-----eeeEEecCCCCEEEEE-EcCCC--------------------CcEEEEEeCCCeEE
Q 039302 298 SCSVDGNIAIWDTRV-GKS-----ALMSFKAHNADVNVIS-WNRLA--------------------SCLLASGSDDGTFS 350 (479)
Q Consensus 298 s~s~dg~I~iwD~~~-~~~-----~~~~~~~h~~~v~~l~-~~p~~--------------------~~~l~sgs~dg~i~ 350 (479)
+|...|.+.+|.+.- ... .......+.+.|..|. ++.+. +.+++++ .+..++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv-Se~~ir 238 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV-SESDIR 238 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SSEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE-cccceE
Confidence 889999999998852 111 1111124556655554 43221 1244444 467899
Q ss_pred EEeCCCCCCCCceEEEeecCCCCeEEEEEeC----CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 351 IHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP----HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp----~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
++.+-+.+ ..............+.+-+ ..+..|++-..+|.|+++.+...+.
T Consensus 239 v~~~~~~k----~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lke-------------------- 294 (395)
T PF08596_consen 239 VFKPPKSK----GAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKE-------------------- 294 (395)
T ss_dssp EE-TT-------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--E--------------------
T ss_pred EEeCCCCc----ccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchH--------------------
Confidence 99988776 3333222222333444521 2457888899999999999987752
Q ss_pred CCCceEEeecCC----CCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 427 LPPQLLFIHQGQ----KDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 427 ~p~~l~~~h~g~----~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
+....-.. ..+....+.++|. +++-.+...+.++.++.-
T Consensus 295 ----i~~~~l~~~~d~~~~~~ssis~~Gd-i~~~~gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 295 ----IKSVSLPPPLDSRRLSSSSISRNGD-IFYWTGPSEIQLFSVWGE 337 (395)
T ss_dssp ----EEEEE-SS---HHHHTT-EE-TTS--EEEE-SSSEEEEEEEES-
T ss_pred ----hhcccCCCccccccccccEECCCCC-EEEEeCcccEEEEEEEcc
Confidence 11111100 1366777888886 665566555555555443
No 329
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.76 E-value=0.018 Score=57.14 Aligned_cols=144 Identities=15% Similarity=0.082 Sum_probs=83.6
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCC--CcEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHA--ASVEDLQWSP--TESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~--~~V~~l~~sp--~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.++.+..+|.+..+|+.++.. |........+.. ..+..+.-+| .+. .+.+++.+|.+..||..+++ .+....
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~-~vy~~~~~g~l~a~d~~tG~-~~W~~~- 268 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGG-QVYAVSYQGRVAALDLRSGR-VLWKRD- 268 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECC-EEEEEEcCCEEEEEECCCCc-EEEeec-
Confidence 678888889999999877643 221100000000 0000110011 133 67777889999999999885 333322
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-CCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-KHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.. ....... .+ ..++.++.+|.|..+|..+++ .+...... .....+.... + ..|++++.+|.|+++|.
T Consensus 269 ~~-~~~~p~~--~~-~~vyv~~~~G~l~~~d~~tG~----~~W~~~~~~~~~~ssp~i~--g-~~l~~~~~~G~l~~~d~ 337 (377)
T TIGR03300 269 AS-SYQGPAV--DD-NRLYVTDADGVVVALDRRSGS----ELWKNDELKYRQLTAPAVV--G-GYLVVGDFEGYLHWLSR 337 (377)
T ss_pred cC-CccCceE--eC-CEEEEECCCCeEEEEECCCCc----EEEccccccCCccccCEEE--C-CEEEEEeCCCEEEEEEC
Confidence 11 1122222 23 567777889999999998887 44443221 1122222222 3 68888999999999998
Q ss_pred CCCC
Q 039302 402 SLEK 405 (479)
Q Consensus 402 ~~~~ 405 (479)
.+++
T Consensus 338 ~tG~ 341 (377)
T TIGR03300 338 EDGS 341 (377)
T ss_pred CCCC
Confidence 8763
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.005 Score=61.46 Aligned_cols=189 Identities=12% Similarity=0.128 Sum_probs=104.3
Q ss_pred CcceeEEEEecCCCcEEEEEeC--C-ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWAD--T-GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~--d-g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
...+..-+|+|++..+....-. . ..+.++++... ....+..+.++. ..-+|+|++
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g-------------------~~~~i~~~~g~~---~~P~fspDG 249 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG-------------------KRPVILNFNGNN---GAPAFSPDG 249 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCC-------------------ccceeeccCCcc---CCccCCCCC
Confidence 4556667888888554333211 1 35888888873 122333344444 467899999
Q ss_pred CCeEEEEeCCCeE--EEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 246 PGRLVSGDCNSCI--HLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 246 ~~~l~sg~~dg~I--~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
...+++...||.. .+.|+....... .....+. -..=.|+|+|+.++.+.+..|.-.||-..........+...
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~--Lt~~~gi---~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~ 324 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPR--LTNGFGI---NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFS 324 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCccee--cccCCcc---ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeecc
Confidence 8666677777755 455665543211 1222222 22557999999777777777765555443332222333333
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 324 NADVNVISWNRLASCLLASGSDDGT--FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~--i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
...-..-.|+|++..++..+..+|. |.+.|+.+.. .+..+. +......-.|.|++..++.+
T Consensus 325 ~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~----~~~~lt-~~~~~e~ps~~~ng~~i~~~ 387 (425)
T COG0823 325 GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGG----KIRILT-STYLNESPSWAPNGRMIMFS 387 (425)
T ss_pred CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCC----cEEEcc-ccccCCCCCcCCCCceEEEe
Confidence 3322377899999544444434455 6666665554 233332 34444556777765333333
No 331
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.64 E-value=0.031 Score=54.82 Aligned_cols=153 Identities=13% Similarity=0.159 Sum_probs=84.6
Q ss_pred CCcEEEEEECCCCCcEEEE--EeCCC---cEEEEEcCCCCceeeEEecCCCCE---EEEEEc-CCCCcEEEEEeCCCeEE
Q 039302 280 AASVEDLQWSPTESDVFAS--CSVDG---NIAIWDTRVGKSALMSFKAHNADV---NVISWN-RLASCLLASGSDDGTFS 350 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s--~s~dg---~I~iwD~~~~~~~~~~~~~h~~~v---~~l~~~-p~~~~~l~sgs~dg~i~ 350 (479)
...+..+.|.+++. .|+. .+.+. .+.++|..++...+.........| ....|. +++..+|.....+|.-+
T Consensus 183 ~~yl~~v~W~~d~~-~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 183 DYYLTRVGWSPDGK-RLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp SEEEEEEEEEETTE-EEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred ccCcccceecCCCc-EEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 44578899998887 3333 33322 367778877653322223233332 244554 66667777777888655
Q ss_pred EEeCCCCCCCCceEEEeecCCCCeEE-EEEeCCCCCEEEEEeCCC--cEEEEECCCC-CChHHHHHHhhhcccccCCCCC
Q 039302 351 IHDLRLLKGGDSVVAHFEYHKHPVTS-IEWSPHEGSTLAVSSADN--QLTIWDLSLE-KDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~~h~~~I~~-v~~sp~~~~~las~s~Dg--~I~iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
||-+..... ....+....-.|+. +.|++.+..++.++..++ .-.+|-+... ..
T Consensus 262 ly~~~~~~~---~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~-------------------- 318 (353)
T PF00930_consen 262 LYLYDLDGG---KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG-------------------- 318 (353)
T ss_dssp EEEEETTSS---EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--------------------
T ss_pred EEEEccccc---ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--------------------
Confidence 554444332 34455555556755 678887767777777633 4444444333 10
Q ss_pred CCCceEEeecCCCCe-eeEEEeCCCCcEEEEEcCC
Q 039302 427 LPPQLLFIHQGQKDL-KELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 427 ~p~~l~~~h~g~~~V-~~v~w~p~~~~ll~s~~~d 460 (479)
.+... ...... ..+.|+|++.+++..++.-
T Consensus 319 ---~~~~L-T~~~~~~~~~~~Spdg~y~v~~~s~~ 349 (353)
T PF00930_consen 319 ---EPKCL-TCEDGDHYSASFSPDGKYYVDTYSGP 349 (353)
T ss_dssp ---EEEES-STTSSTTEEEEE-TTSSEEEEEEESS
T ss_pred ---CeEec-cCCCCCceEEEECCCCCEEEEEEcCC
Confidence 11111 111223 5899999999888887764
No 332
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.63 E-value=0.0032 Score=62.81 Aligned_cols=163 Identities=19% Similarity=0.183 Sum_probs=95.5
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEE---eCC-CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSG---DCN-SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg---~~d-g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
.+..-...+..-+|+|++.. ++-. ... ..+.++++.++..... ..+.++. ..-+|+|+|+.++++...||
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~-~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~~~g~~---~~P~fspDG~~l~f~~~rdg 260 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKK-LAYVSFELGGCPRIYYLDLNTGKRPVI--LNFNGNN---GAPAFSPDGSKLAFSSSRDG 260 (425)
T ss_pred EecccCcceeccccCcCCCc-eEEEEEecCCCceEEEEeccCCcccee--eccCCcc---CCccCCCCCCEEEEEECCCC
Confidence 33334456777889999874 3322 222 4699999988765432 2243433 45689999997777777788
Q ss_pred cEEE--EEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEE--EEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 304 NIAI--WDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFS--IHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 304 ~I~i--wD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~--iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
...| .|+.... +..+....+.-..=.|+|+|..++.+.+..|.-. ++++.... ...+......-..-.|
T Consensus 261 ~~~iy~~dl~~~~--~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-----~~riT~~~~~~~~p~~ 333 (425)
T COG0823 261 SPDIYLMDLDGKN--LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-----VTRLTFSGGGNSNPVW 333 (425)
T ss_pred CccEEEEcCCCCc--ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-----eeEeeccCCCCcCccC
Confidence 7555 5666554 3333322232336689999966666766667544 44554443 2333333333337789
Q ss_pred eCCCCCEEEEEeC-CCc--EEEEECCCC
Q 039302 380 SPHEGSTLAVSSA-DNQ--LTIWDLSLE 404 (479)
Q Consensus 380 sp~~~~~las~s~-Dg~--I~iwdl~~~ 404 (479)
+|++ .+|+..+. +|. |.+.|+...
T Consensus 334 SpdG-~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 334 SPDG-DKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred CCCC-CEEEEEeccCCceeeEEeccCCC
Confidence 9977 55555443 455 555555444
No 333
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.63 E-value=0.0067 Score=55.68 Aligned_cols=182 Identities=16% Similarity=0.105 Sum_probs=102.6
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEec
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEP 263 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~ 263 (479)
.+.+++.++.|+.||..+ ++.+..+.... .+.... ...+ +.++.++.++.|+.+|.
T Consensus 38 ~v~~~~~~~~l~~~d~~t---------------------G~~~W~~~~~~-~~~~~~-~~~~-~~v~v~~~~~~l~~~d~ 93 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKT---------------------GKVLWRFDLPG-PISGAP-VVDG-GRVYVGTSDGSLYALDA 93 (238)
T ss_dssp EEEEEETTSEEEEEETTT---------------------SEEEEEEECSS-CGGSGE-EEET-TEEEEEETTSEEEEEET
T ss_pred EEEEEcCCCEEEEEECCC---------------------CCEEEEeeccc-ccccee-eecc-cccccccceeeeEeccc
Confidence 344558999999999876 44444444311 111111 1122 26777778889999998
Q ss_pred CCCCcccc-CCCCcccCC-CcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC----------E-EEE
Q 039302 264 ASDATWNV-DPNPFIGHA-ASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD----------V-NVI 330 (479)
Q Consensus 264 ~~~~~~~~-~~~~~~~h~-~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~----------v-~~l 330 (479)
.++..... ......... .......+. +. .++.+..++.|..+|.++++ .+......... + ..+
T Consensus 94 ~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~g~l~~~d~~tG~-~~w~~~~~~~~~~~~~~~~~~~~~~~ 169 (238)
T PF13360_consen 94 KTGKVLWSIYLTSSPPAGVRSSSSPAVD--GD-RLYVGTSSGKLVALDPKTGK-LLWKYPVGEPRGSSPISSFSDINGSP 169 (238)
T ss_dssp TTSCEEEEEEE-SSCTCSTB--SEEEEE--TT-EEEEEETCSEEEEEETTTTE-EEEEEESSTT-SS--EEEETTEEEEE
T ss_pred CCcceeeeeccccccccccccccCceEe--cC-EEEEEeccCcEEEEecCCCc-EEEEeecCCCCCCcceeeecccccce
Confidence 77655221 111111111 111122222 55 78888889999999999986 44444433311 1 222
Q ss_pred EEcCCCCcEEEEEeCCCe-EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 331 SWNRLASCLLASGSDDGT-FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~-i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+. ++ .+..++.++. +.+ |+.+++ .+.... ...+..+ ..+.+ ..|+.++.++.|.+||+++++
T Consensus 170 ~~~-~~--~v~~~~~~g~~~~~-d~~tg~----~~w~~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 170 VIS-DG--RVYVSSGDGRVVAV-DLATGE----KLWSKP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKTGK 233 (238)
T ss_dssp ECC-TT--EEEEECCTSSEEEE-ETTTTE----EEEEEC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTTTE
T ss_pred EEE-CC--EEEEEcCCCeEEEE-ECCCCC----EEEEec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCCCC
Confidence 223 33 5556666674 555 999887 343332 2223332 23434 667766699999999999874
No 334
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.60 E-value=0.028 Score=55.19 Aligned_cols=204 Identities=14% Similarity=0.169 Sum_probs=110.2
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-------C---------CCcEEEEEECCCCCcEE
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-------H---------AASVEDLQWSPTESDVF 296 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-------h---------~~~V~~l~~sp~~~~~l 296 (479)
...+....|||++. .++-.. ++.|.+++..++....+ +..+ - -+.-..+-|||+++ .|
T Consensus 42 ~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~~l---T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~-~l 115 (353)
T PF00930_consen 42 PPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQETQL---TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK-YL 115 (353)
T ss_dssp ETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEEES---ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSS-EE
T ss_pred ccccccceeecCCC-eeEEEe-cCceEEEECCCCCeEEe---ccccceeEEcCccceeccccccccccceEECCCCC-EE
Confidence 55788999999987 777766 68999998866532111 1111 0 11224678999998 55
Q ss_pred EEEe-CCCcE-----------------------------------EEEEcCCCCceeeEE----ecCCCCEEEEEEcCCC
Q 039302 297 ASCS-VDGNI-----------------------------------AIWDTRVGKSALMSF----KAHNADVNVISWNRLA 336 (479)
Q Consensus 297 ~s~s-~dg~I-----------------------------------~iwD~~~~~~~~~~~----~~h~~~v~~l~~~p~~ 336 (479)
|... .+..| .|+|+.+++...... ..-...+..+.|.+++
T Consensus 116 a~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~ 195 (353)
T PF00930_consen 116 AFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDG 195 (353)
T ss_dssp EEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETT
T ss_pred EEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCC
Confidence 5442 22222 333443332111111 1223457788998888
Q ss_pred CcEEEE-EeCCC---eEEEEeCCCCCCCCceEEEeecCCCCe---EEEEEe-CCCCCEEEEEeCCCcEEEEECCCCCChH
Q 039302 337 SCLLAS-GSDDG---TFSIHDLRLLKGGDSVVAHFEYHKHPV---TSIEWS-PHEGSTLAVSSADNQLTIWDLSLEKDEE 408 (479)
Q Consensus 337 ~~~l~s-gs~dg---~i~iwDlr~~~~~~~~~~~~~~h~~~I---~~v~~s-p~~~~~las~s~Dg~I~iwdl~~~~~~~ 408 (479)
..+++. -..+. .+.++|..++.. .+.........| ..+.|. +++..+|.....||.-+||-+.....
T Consensus 196 ~~l~~~~~nR~q~~~~l~~~d~~tg~~---~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~-- 270 (353)
T PF00930_consen 196 KRLWVQWLNRDQNRLDLVLCDASTGET---RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG-- 270 (353)
T ss_dssp EEEEEEEEETTSTEEEEEEEEECTTTC---EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS--
T ss_pred cEEEEEEcccCCCEEEEEEEECCCCce---eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccc--
Confidence 313333 33332 467778877653 222223334443 355555 66667777777888766666655431
Q ss_pred HHHHHhhhcccccCCCCCCCCceEEeecCCCCeee-EEEeCCCCcEEEEEcCCC---ceEEeee
Q 039302 409 EEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKE-LHWHTQVPGMIVSTAADG---FNILMPS 468 (479)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~-v~w~p~~~~ll~s~~~dg---i~iw~~~ 468 (479)
.....-.|.-.|.+ +.|++.+..+..++..++ -.+|++.
T Consensus 271 ---------------------~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~ 313 (353)
T PF00930_consen 271 ---------------------KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVS 313 (353)
T ss_dssp ---------------------EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEE
T ss_pred ---------------------ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEE
Confidence 12344445456755 788888876766666533 5666653
No 335
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.58 E-value=0.019 Score=52.67 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=82.1
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE-EecCC-
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS-FKAHN- 324 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~-~~~h~- 324 (479)
.+++++.++.|+.||..++.. |... +.+..... ... .+. .++.++.++.|..+|..+++ .+.. .....
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~---~~~~~~~~---~~~-~~~-~v~v~~~~~~l~~~d~~tG~-~~W~~~~~~~~ 108 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFD---LPGPISGA---PVV-DGG-RVYVGTSDGSLYALDAKTGK-VLWSIYLTSSP 108 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEE---CSSCGGSG---EEE-ETT-EEEEEETTSEEEEEETTTSC-EEEEEEE-SSC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEee---ccccccce---eee-ccc-ccccccceeeeEecccCCcc-eeeeecccccc
Confidence 788888999999999987654 2221 11110111 111 233 56666788899999999986 3433 22221
Q ss_pred --CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe-----------EEEEEeCCCCCEEEEEe
Q 039302 325 --ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV-----------TSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 325 --~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I-----------~~v~~sp~~~~~las~s 391 (479)
.....+.....+ ..++.+..++.|..+|+++++ .+.......... ..+.+. ++ .+..++
T Consensus 109 ~~~~~~~~~~~~~~-~~~~~~~~~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~v~~~~ 180 (238)
T PF13360_consen 109 PAGVRSSSSPAVDG-DRLYVGTSSGKLVALDPKTGK----LLWKYPVGEPRGSSPISSFSDINGSPVIS--DG-RVYVSS 180 (238)
T ss_dssp TCSTB--SEEEEET-TEEEEEETCSEEEEEETTTTE----EEEEEESSTT-SS--EEEETTEEEEEECC--TT-EEEEEC
T ss_pred ccccccccCceEec-CEEEEEeccCcEEEEecCCCc----EEEEeecCCCCCCcceeeecccccceEEE--CC-EEEEEc
Confidence 111122222224 677888889999999999998 666666543221 222222 33 666677
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
.++.+..+|+.++
T Consensus 181 ~~g~~~~~d~~tg 193 (238)
T PF13360_consen 181 GDGRVVAVDLATG 193 (238)
T ss_dssp CTSSEEEEETTTT
T ss_pred CCCeEEEEECCCC
Confidence 7775443498887
No 336
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.55 E-value=0.014 Score=57.97 Aligned_cols=131 Identities=13% Similarity=0.125 Sum_probs=84.5
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec-CCC
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA-HNA 325 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~-h~~ 325 (479)
.++.++.+|.++.||+.++.. |.. ..... ..... .+. .++.++.+|.|..+|..+++ .+..... ...
T Consensus 243 ~vy~~~~~g~l~a~d~~tG~~~W~~---~~~~~----~~p~~--~~~-~vyv~~~~G~l~~~d~~tG~-~~W~~~~~~~~ 311 (377)
T TIGR03300 243 QVYAVSYQGRVAALDLRSGRVLWKR---DASSY----QGPAV--DDN-RLYVTDADGVVVALDRRSGS-ELWKNDELKYR 311 (377)
T ss_pred EEEEEEcCCEEEEEECCCCcEEEee---ccCCc----cCceE--eCC-EEEEECCCCeEEEEECCCCc-EEEccccccCC
Confidence 788888899999999987644 221 11111 11122 244 67777889999999998885 3333311 111
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE-EEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT-SIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~-~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
...+... .+ ..|++++.+|.|+++|.++++ .+..+..+...+. +..+. + ..|+.++.||.|+.+
T Consensus 312 ~~ssp~i--~g-~~l~~~~~~G~l~~~d~~tG~----~~~~~~~~~~~~~~sp~~~--~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 312 QLTAPAV--VG-GYLVVGDFEGYLHWLSREDGS----FVARLKTDGSGIASPPVVV--G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred ccccCEE--EC-CEEEEEeCCCEEEEEECCCCC----EEEEEEcCCCccccCCEEE--C-CEEEEEeCCceEEEe
Confidence 1222222 23 578889999999999999887 7777776665433 33333 3 458888899998865
No 337
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.55 E-value=0.0035 Score=62.73 Aligned_cols=193 Identities=17% Similarity=0.210 Sum_probs=101.5
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
.+....-....|.++|++. .++.++ +|...|+...... ....+.-.+.+|.+.+ .+|+-...++|.|
T Consensus 27 ~lg~~~~~p~~ls~npngr-~v~V~g-~geY~iyt~~~~r---------~k~~G~g~~~vw~~~n--~yAv~~~~~~I~I 93 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGR-FVLVCG-DGEYEIYTALAWR---------NKAFGSGLSFVWSSRN--RYAVLESSSTIKI 93 (443)
T ss_dssp EEEE-SS--SEEEE-TTSS-EEEEEE-TTEEEEEETTTTE---------EEEEEE-SEEEE-TSS--EEEEE-TTS-EEE
T ss_pred cCCCCCcCCeeEEECCCCC-EEEEEc-CCEEEEEEccCCc---------ccccCceeEEEEecCc--cEEEEECCCeEEE
Confidence 3333444678999999997 666655 7888888732211 1123456678999844 5888888999999
Q ss_pred EEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 308 WDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 308 wD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
+.--... ....+... ..+..|-. | .+|+..+.+ .|.+||..+.+ .+..+... +|..|.|++++ .++
T Consensus 94 ~kn~~~~-~~k~i~~~-~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~----~i~~i~v~--~vk~V~Ws~~g-~~v 159 (443)
T PF04053_consen 94 YKNFKNE-VVKSIKLP-FSVEKIFG---G-NLLGVKSSD-FICFYDWETGK----LIRRIDVS--AVKYVIWSDDG-ELV 159 (443)
T ss_dssp EETTEE--TT-----S-S-EEEEE----S-SSEEEEETT-EEEEE-TTT------EEEEESS---E-EEEEE-TTS-SEE
T ss_pred EEcCccc-cceEEcCC-cccceEEc---C-cEEEEECCC-CEEEEEhhHcc----eeeEEecC--CCcEEEEECCC-CEE
Confidence 7322221 21222211 22444333 5 666666554 89999999988 78888743 48999999965 777
Q ss_pred EEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceE
Q 039302 388 AVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNI 464 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~i 464 (479)
|..+. ..+.|++.....-. . .........+-..|.-...|.+..|.-+ -++.++.. .++-
T Consensus 160 al~t~-~~i~il~~~~~~~~----~---------~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY 219 (443)
T PF04053_consen 160 ALVTK-DSIYILKYNLEAVA----A---------IPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY 219 (443)
T ss_dssp EEE-S--SEEEEEE-HHHHH----H---------BTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE
T ss_pred EEEeC-CeEEEEEecchhcc----c---------ccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE
Confidence 77774 47888876544100 0 1111222244455553467999999876 45555555 4443
No 338
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.54 E-value=0.11 Score=51.97 Aligned_cols=166 Identities=9% Similarity=0.058 Sum_probs=81.6
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccC--CCCcccCCCcEEEEEECCCCCcEEEEEeC
Q 039302 224 SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVD--PNPFIGHAASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~ 301 (479)
+++.++.-..+.+.++.|+.+. .|+.-..||.++++|+......... .....-....+..+.+..+| ++.-..
T Consensus 71 ~ll~~i~w~~~~iv~~~wt~~e--~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G---ivvLt~ 145 (410)
T PF04841_consen 71 KLLSSIPWDSGRIVGMGWTDDE--ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG---IVVLTG 145 (410)
T ss_pred CEeEEEEECCCCEEEEEECCCC--eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC---EEEECC
Confidence 4444443334799999998854 6777778999999998532200000 00001111122222333233 222233
Q ss_pred CCcEEEEEcCCCCceeeEE----------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC
Q 039302 302 DGNIAIWDTRVGKSALMSF----------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK 371 (479)
Q Consensus 302 dg~I~iwD~~~~~~~~~~~----------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~ 371 (479)
++.+.+..--........+ ..+........+..+. ...+....++.+.+.+-.... . +. ..
T Consensus 146 ~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~-~~~i~~~~g~~i~~i~~~~~~----~---i~-~~ 216 (410)
T PF04841_consen 146 NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDR-VVEILLANGETIYIIDENSFK----Q---ID-SD 216 (410)
T ss_pred CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCc-ceEEEEecCCEEEEEEccccc----c---cc-CC
Confidence 4444333221111000111 0011110012233333 334444455555544433221 1 21 24
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 372 HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+++..|+.||++ .++|.-..+|.+.|......
T Consensus 217 ~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 217 GPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred CCeEEEEECCCC-CEEEEEECCCCEEEEECccc
Confidence 689999999965 88999999999998876554
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.52 E-value=0.0094 Score=57.67 Aligned_cols=158 Identities=15% Similarity=0.108 Sum_probs=91.7
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC--ceEEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD--EGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~ 240 (479)
.......++|++++-. .+ .++++. .+.|.+|++... +.+.....+.. .+.++.
T Consensus 82 i~~~~~~g~V~ai~~~-~~-~lv~~~--g~~l~v~~l~~~---------------------~~l~~~~~~~~~~~i~sl~ 136 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NG-RLVVAV--GNKLYVYDLDNS---------------------KTLLKKAFYDSPFYITSLS 136 (321)
T ss_dssp EEEEEESS-EEEEEEE-TT-EEEEEE--TTEEEEEEEETT---------------------SSEEEEEEE-BSSSEEEEE
T ss_pred EEEEeecCcceEhhhh-CC-EEEEee--cCEEEEEEccCc---------------------ccchhhheecceEEEEEEe
Confidence 3455668999999988 34 455543 478999999872 21222222222 455555
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC------
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG------ 313 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~------ 313 (479)
.. ++ +++.|+.-..|.++..+.... ... .........++++.|-+++. .++.+..+|.|.++.....
T Consensus 137 ~~--~~-~I~vgD~~~sv~~~~~~~~~~~l~~--va~d~~~~~v~~~~~l~d~~-~~i~~D~~gnl~~l~~~~~~~~~~~ 210 (321)
T PF03178_consen 137 VF--KN-YILVGDAMKSVSLLRYDEENNKLIL--VARDYQPRWVTAAEFLVDED-TIIVGDKDGNLFVLRYNPEIPNSRD 210 (321)
T ss_dssp EE--TT-EEEEEESSSSEEEEEEETTTE-EEE--EEEESS-BEEEEEEEE-SSS-EEEEEETTSEEEEEEE-SS-SSTTT
T ss_pred cc--cc-EEEEEEcccCEEEEEEEccCCEEEE--EEecCCCccEEEEEEecCCc-EEEEEcCCCeEEEEEECCCCccccc
Confidence 44 44 999999999999886654222 111 11112345688999987775 8999999999999987632
Q ss_pred Cc-eee--EEecCCCCEEEE---EEcC--CCC-----cEEEEEeCCCeEEE
Q 039302 314 KS-ALM--SFKAHNADVNVI---SWNR--LAS-----CLLASGSDDGTFSI 351 (479)
Q Consensus 314 ~~-~~~--~~~~h~~~v~~l---~~~p--~~~-----~~l~sgs~dg~i~i 351 (479)
.. .+. ........|+++ ++.| .+. ..++.++.+|.|.+
T Consensus 211 ~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 211 GDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp TTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred ccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 11 111 112234567777 5555 221 24777888888874
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00045 Score=68.92 Aligned_cols=95 Identities=19% Similarity=0.312 Sum_probs=73.9
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEE-EEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVE-DLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
...+.-+.|+|.-+ .||.+..+|.|.+..++-...|. +.-|...|+ +++|.|+|+ ++|.|-.||+|+|.|+.
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qRlwt-----ip~p~~~v~~sL~W~~DGk-llaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNWQRLWT-----IPIPGENVTASLCWRPDGK-LLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEeccceeEe-----ccCCCCccceeeeecCCCC-EEEEEecCCeEEEEEcc
Confidence 34788999999998 99999999999999887444333 222444555 999999998 99999999999999999
Q ss_pred CCCceeeEEecCCCCEEEEEEcC
Q 039302 312 VGKSALMSFKAHNADVNVISWNR 334 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p 334 (479)
++.........-..+|.++-|.+
T Consensus 93 ~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 93 KGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred CCCceeccccccccchheeeccc
Confidence 98633222244556788888875
No 341
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.46 E-value=0.0089 Score=63.34 Aligned_cols=125 Identities=16% Similarity=0.183 Sum_probs=82.0
Q ss_pred CCCcEEecCCCCceEEEEeCCCC------CCeEEEEeCCCeEEEEecCCCCccccC--CCCcccCCCcEEEEEECCCCCc
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVA------PGRLVSGDCNSCIHLWEPASDATWNVD--PNPFIGHAASVEDLQWSPTESD 294 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~------~~~l~sg~~dg~I~lwd~~~~~~~~~~--~~~~~~h~~~V~~l~~sp~~~~ 294 (479)
++.+..+..|... .-..+.|+. ...-+.|-.+..+..||++-.+...+. ...+ .......|++-+.+|
T Consensus 514 GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y-~~~~~Fs~~aTt~~G-- 589 (794)
T PF08553_consen 514 GKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQY-SSKNNFSCFATTEDG-- 589 (794)
T ss_pred CcEEEEeecCCCc-ceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccccc-ccCCCceEEEecCCc--
Confidence 5666666666542 133444432 125667777899999999875422111 1112 234457788877766
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 295 VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.||+|+.+|.||+||- .+......+.+-..+|..|..+.+|..+|||+ +..+.+++.
T Consensus 590 ~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc--~tyLlLi~t 646 (794)
T PF08553_consen 590 YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC--KTYLLLIDT 646 (794)
T ss_pred eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee--cceEEEEEE
Confidence 6999999999999994 44334445667789999999999995455544 457777775
No 342
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0007 Score=67.61 Aligned_cols=94 Identities=19% Similarity=0.368 Sum_probs=77.1
Q ss_pred CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE-EEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN-VISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~-~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
...+.-+.|+|.-. ++|.+..+|.|.+..+.- ..+.++..|+..++ +++|.|+| ++||.|-.||+|++.|..++.
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n~--qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLNW--QRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEecc--ceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCC
Confidence 34678899999988 999999999999998883 25667776777777 99999998 999999999999999999887
Q ss_pred CCCceEEE-eecCCCCeEEEEEeC
Q 039302 359 GGDSVVAH-FEYHKHPVTSIEWSP 381 (479)
Q Consensus 359 ~~~~~~~~-~~~h~~~I~~v~~sp 381 (479)
.+.. ...-...|.++-|.|
T Consensus 96 ----~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 ----RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ----ceeccccccccchheeeccc
Confidence 3444 223456788888875
No 343
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.42 E-value=0.071 Score=49.03 Aligned_cols=169 Identities=14% Similarity=0.169 Sum_probs=94.9
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
.+.+-..++.+|+|+|+...++++....+.|...+.. +.... ...+.+ .+-...|++..++. ++++--.++.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr--~i~l~g-~~D~EgI~y~g~~~-~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLR--RIPLDG-FGDYEGITYLGNGR-YVLSEERDQRLYI 90 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE--EEE-SS--SSEEEEEE-STTE-EEEEETTTTEEEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEE--EEeCCC-CCCceeEEEECCCE-EEEEEcCCCcEEE
Confidence 4556666899999999876467777778888777763 33322 223444 35688999986665 4444445899999
Q ss_pred EEcCCCCc-----eeeEE-----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCc-eEEEe------ecC
Q 039302 308 WDTRVGKS-----ALMSF-----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDS-VVAHF------EYH 370 (479)
Q Consensus 308 wD~~~~~~-----~~~~~-----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~-~~~~~------~~h 370 (479)
+++..... .+..+ ..++..+-.++|++.+..+++ +-...-..||.++....... .+... ...
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v-~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFV-AKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLF 169 (248)
T ss_dssp EEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEE-EEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--
T ss_pred EEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEE-EeCCCChhhEEEccccCccceeeccccccccccce
Confidence 99844321 11112 235667999999998845554 55555566666654110000 11111 123
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 371 KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 371 ~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...+.+++++|..+.+++.+.....|.++|..
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE-TT
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEECCC
Confidence 44678999999888888888889999999843
No 344
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.34 E-value=0.18 Score=50.70 Aligned_cols=201 Identities=11% Similarity=0.103 Sum_probs=109.6
Q ss_pred eeEEEEecCCCcEEEEEeCCce----EEEEeCCCCcccccccccccCCCCCccccCCCcE-EecCCCCceEEEEeCCCCC
Q 039302 172 VNRIRAMSQNPHICASWADTGH----VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-KFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~----V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s~~~~ 246 (479)
+....++|++..++.+-+..|. |+++|+.+ ++.+. .+.. .....+.|.+++.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t---------------------g~~l~d~i~~--~~~~~~~W~~d~~ 182 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET---------------------GKFLPDGIEN--PKFSSVSWSDDGK 182 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT---------------------TEEEEEEEEE--EESEEEEECTTSS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCC---------------------CcCcCCcccc--cccceEEEeCCCC
Confidence 4467889999666666555554 99999987 22222 1111 1222399999988
Q ss_pred CeEEEEeCC----------CeEEEEecCCCCccccCCCCcccCCC--cEEEEEECCCCCcEEEEEeCCC---cEEEEEcC
Q 039302 247 GRLVSGDCN----------SCIHLWEPASDATWNVDPNPFIGHAA--SVEDLQWSPTESDVFASCSVDG---NIAIWDTR 311 (479)
Q Consensus 247 ~~l~sg~~d----------g~I~lwd~~~~~~~~~~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~dg---~I~iwD~~ 311 (479)
+++.+...+ ..|+.|.+.+...... ..+..... ....+..+++++.+++...... .+.+.|+.
T Consensus 183 ~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~--lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~ 260 (414)
T PF02897_consen 183 GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE--LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLD 260 (414)
T ss_dssp EEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-E--EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECC
T ss_pred EEEEEEeCcccccccCCCCcEEEEEECCCChHhCe--eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecc
Confidence 555665333 2478888866433211 11222222 2668889999996666555444 47888888
Q ss_pred CC---CceeeEEecCCCCE-EEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCCCCCceEEEeecCCCC--eEEEEEeCC
Q 039302 312 VG---KSALMSFKAHNADV-NVISWNRLASCLLASGS---DDGTFSIHDLRLLKGGDSVVAHFEYHKHP--VTSIEWSPH 382 (479)
Q Consensus 312 ~~---~~~~~~~~~h~~~v-~~l~~~p~~~~~l~sgs---~dg~i~iwDlr~~~~~~~~~~~~~~h~~~--I~~v~~sp~ 382 (479)
.. ......+......+ ..+... .+ .+++... ..+.|.-.++..... ......+..|... +..+...
T Consensus 261 ~~~~~~~~~~~l~~~~~~~~~~v~~~-~~-~~yi~Tn~~a~~~~l~~~~l~~~~~-~~~~~~l~~~~~~~~l~~~~~~-- 335 (414)
T PF02897_consen 261 DGGSPDAKPKLLSPREDGVEYYVDHH-GD-RLYILTNDDAPNGRLVAVDLADPSP-AEWWTVLIPEDEDVSLEDVSLF-- 335 (414)
T ss_dssp CTTTSS-SEEEEEESSSS-EEEEEEE-TT-EEEEEE-TT-TT-EEEEEETTSTSG-GGEEEEEE--SSSEEEEEEEEE--
T ss_pred ccCCCcCCcEEEeCCCCceEEEEEcc-CC-EEEEeeCCCCCCcEEEEeccccccc-ccceeEEcCCCCceeEEEEEEE--
Confidence 74 22333333333334 344444 33 4444332 235677778777652 0122255556653 5555544
Q ss_pred CCCEEEEEeCCC--cEEEEECC
Q 039302 383 EGSTLAVSSADN--QLTIWDLS 402 (479)
Q Consensus 383 ~~~~las~s~Dg--~I~iwdl~ 402 (479)
+..+++..-.++ .|+++++.
T Consensus 336 ~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 336 KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp TTEEEEEEEETTEEEEEEEETT
T ss_pred CCEEEEEEEECCccEEEEEECC
Confidence 446666666665 57888888
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.33 E-value=0.1 Score=50.47 Aligned_cols=146 Identities=14% Similarity=0.140 Sum_probs=88.9
Q ss_pred eEEEEeC---------C-CeEEEEecCCCC--ccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-
Q 039302 248 RLVSGDC---------N-SCIHLWEPASDA--TWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK- 314 (479)
Q Consensus 248 ~l~sg~~---------d-g~I~lwd~~~~~--~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~- 314 (479)
+|+.|.. . |.|.++++.... ........-....++|++|+-- +. .|+++. .+.|.+|++...+
T Consensus 44 ~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~-~lv~~~-g~~l~v~~l~~~~~ 119 (321)
T PF03178_consen 44 YIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NG-RLVVAV-GNKLYVYDLDNSKT 119 (321)
T ss_dssp EEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TT-EEEEEE-TTEEEEEEEETTSS
T ss_pred EEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CC-EEEEee-cCEEEEEEccCccc
Confidence 7777753 2 899999998741 0111111122346889998866 33 344333 5899999999876
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe--ecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF--EYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~--~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
-...........+.++... + ++|+.|.....+.++..+.... .+..+ ......++++.+-+++ ..++.+..
T Consensus 120 l~~~~~~~~~~~i~sl~~~--~-~~I~vgD~~~sv~~~~~~~~~~---~l~~va~d~~~~~v~~~~~l~d~-~~~i~~D~ 192 (321)
T PF03178_consen 120 LLKKAFYDSPFYITSLSVF--K-NYILVGDAMKSVSLLRYDEENN---KLILVARDYQPRWVTAAEFLVDE-DTIIVGDK 192 (321)
T ss_dssp EEEEEEE-BSSSEEEEEEE--T-TEEEEEESSSSEEEEEEETTTE----EEEEEEESS-BEEEEEEEE-SS-SEEEEEET
T ss_pred chhhheecceEEEEEEecc--c-cEEEEEEcccCEEEEEEEccCC---EEEEEEecCCCccEEEEEEecCC-cEEEEEcC
Confidence 2222222233366666665 3 6888998888888775443211 12222 2245678999998756 69999999
Q ss_pred CCcEEEEECCCC
Q 039302 393 DNQLTIWDLSLE 404 (479)
Q Consensus 393 Dg~I~iwdl~~~ 404 (479)
+|.|.++.....
T Consensus 193 ~gnl~~l~~~~~ 204 (321)
T PF03178_consen 193 DGNLFVLRYNPE 204 (321)
T ss_dssp TSEEEEEEE-SS
T ss_pred CCeEEEEEECCC
Confidence 999999998743
No 346
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.28 E-value=0.0008 Score=41.03 Aligned_cols=37 Identities=35% Similarity=0.675 Sum_probs=33.3
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
++..+..|...|+++.|+|.. .++++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 677788899999999999965 8999999999999996
No 347
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.27 E-value=0.00066 Score=41.43 Aligned_cols=38 Identities=24% Similarity=0.450 Sum_probs=33.4
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 224 SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
+++..+..|...+.++.|++.+. .+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 44567778899999999999886 999999999999996
No 348
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.23 E-value=0.018 Score=56.95 Aligned_cols=204 Identities=15% Similarity=0.151 Sum_probs=103.3
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCC-
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNP- 243 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~- 243 (479)
....++|++++.+.-| ++|.|..+|.+.|.|+.... -+.... ... .... .....++++.|+.
T Consensus 83 ~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPa-vI~~~~------------i~~-~~~~~~~~~~vt~ieF~vm 146 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPA-VIYNEN------------IRE-SFLSKSSSSYVTSIEFSVM 146 (395)
T ss_dssp ---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTE-EEEEEE------------GGG---T-SS----EEEEEEEEE
T ss_pred eccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCe-EEeecc------------ccc-cccccccccCeeEEEEEEE
Confidence 3448999999999777 99999999999999996521 110000 000 0011 1233677788762
Q ss_pred --CCCC----eEEEEeCCCeEEEEecC--CCCccccCCCCc-ccCCCcEEEEE-ECCC-C-------------------C
Q 039302 244 --VAPG----RLVSGDCNSCIHLWEPA--SDATWNVDPNPF-IGHAASVEDLQ-WSPT-E-------------------S 293 (479)
Q Consensus 244 --~~~~----~l~sg~~dg~I~lwd~~--~~~~~~~~~~~~-~~h~~~V~~l~-~sp~-~-------------------~ 293 (479)
.+.+ .|++|.+.|.+.+|.+. .++.+.+..... ..+.++|..|. |+.+ + .
T Consensus 147 ~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~ 226 (395)
T PF08596_consen 147 TLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIP 226 (395)
T ss_dssp E-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----
T ss_pred ecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcC
Confidence 2222 78999999999999875 222222211111 24556665555 3221 1 1
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEc----CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWN----RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~----p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
.+++++ .+..++++..-+.+...+.+ .....+..+++- ..+...|++-..+|.|++|.+-..+ .+..+..
T Consensus 227 g~vVvv-Se~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lk----ei~~~~l 300 (395)
T PF08596_consen 227 GYVVVV-SESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLK----EIKSVSL 300 (395)
T ss_dssp EEEEEE--SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT------EEEEEE-
T ss_pred cEEEEE-cccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCch----HhhcccC
Confidence 134444 47789999888765333333 222233344442 1233788888999999999999888 6766655
Q ss_pred CC----CCeEEEEEeCCCCCEEEEEeC
Q 039302 370 HK----HPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 370 h~----~~I~~v~~sp~~~~~las~s~ 392 (479)
+. ..+....+++++ ..++-.|.
T Consensus 301 ~~~~d~~~~~~ssis~~G-di~~~~gp 326 (395)
T PF08596_consen 301 PPPLDSRRLSSSSISRNG-DIFYWTGP 326 (395)
T ss_dssp SS---HHHHTT-EE-TTS--EEEE-SS
T ss_pred CCccccccccccEECCCC-CEEEEeCc
Confidence 32 234456677755 55555543
No 349
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.15 E-value=0.013 Score=57.67 Aligned_cols=143 Identities=10% Similarity=0.082 Sum_probs=89.2
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCc------EEEEEeCCCcEEEEEcCCCCc-eeeEE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESD------VFASCSVDGNIAIWDTRVGKS-ALMSF 320 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~------~l~s~s~dg~I~iwD~~~~~~-~~~~~ 320 (479)
+|.++..-..++--|+..+... ....-|.. |+-+.+.|+... .-+.|-.|..|.-||.|-... .+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIV----eEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~ 422 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIV----EEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVV 422 (644)
T ss_pred EeeCCCCcCcceeeecccceee----eEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeee
Confidence 4555666667777788775431 22222332 555566665431 123455688899999996543 22222
Q ss_pred ecC----CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 321 KAH----NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 321 ~~h----~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
..| ....+|.+-..+| +||+||.+|-|++||. .+.. .-..+.+-..+|..|..+.++ .+|++.+ +..+
T Consensus 423 q~kqy~~k~nFsc~aTT~sG--~IvvgS~~GdIRLYdr-i~~~---AKTAlPgLG~~I~hVdvtadG-Kwil~Tc-~tyL 494 (644)
T KOG2395|consen 423 QSKQYSTKNNFSCFATTESG--YIVVGSLKGDIRLYDR-IGRR---AKTALPGLGDAIKHVDVTADG-KWILATC-KTYL 494 (644)
T ss_pred eccccccccccceeeecCCc--eEEEeecCCcEEeehh-hhhh---hhhcccccCCceeeEEeeccC-cEEEEec-ccEE
Confidence 332 2345555555544 8999999999999997 3332 445678889999999999866 5554444 5667
Q ss_pred EEEECCC
Q 039302 397 TIWDLSL 403 (479)
Q Consensus 397 ~iwdl~~ 403 (479)
.+-++..
T Consensus 495 lLi~t~~ 501 (644)
T KOG2395|consen 495 LLIDTLI 501 (644)
T ss_pred EEEEEec
Confidence 7777654
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.05 E-value=0.41 Score=47.87 Aligned_cols=181 Identities=14% Similarity=0.124 Sum_probs=91.9
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
+.|-++.|..+. .+++. ..||.+++||+.... .+.. ...+....-....+.+..+...| .+
T Consensus 81 ~~iv~~~wt~~e-~LvvV-~~dG~v~vy~~~G~~-~fsl--------------~~~i~~~~v~e~~i~~~~~~~~G--iv 141 (410)
T PF04841_consen 81 GRIVGMGWTDDE-ELVVV-QSDGTVRVYDLFGEF-QFSL--------------GEEIEEEKVLECRIFAIWFYKNG--IV 141 (410)
T ss_pred CCEEEEEECCCC-eEEEE-EcCCEEEEEeCCCce-eech--------------hhhccccCcccccccccccCCCC--EE
Confidence 899999999866 56655 799999999986532 1100 11111111112223333333233 33
Q ss_pred EEEeCCCeEEEEecCCCC-cccc-C--CCCcc-cCC-CcEEE-EEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 250 VSGDCNSCIHLWEPASDA-TWNV-D--PNPFI-GHA-ASVED-LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~-~~~~-~--~~~~~-~h~-~~V~~-l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+. ..++.|.+.+-.... .... . ..... .|. ..+.. ..++.+.. ..+....++.+.+.+-...+ . +.
T Consensus 142 vL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~-~~i~~~~g~~i~~i~~~~~~-~---i~- 214 (410)
T PF04841_consen 142 VL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRV-VEILLANGETIYIIDENSFK-Q---ID- 214 (410)
T ss_pred EE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcc-eEEEEecCCEEEEEEccccc-c---cc-
Confidence 22 223444443221211 1000 0 00000 010 01111 23444444 44444555566644433221 1 11
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-CCCeEEEEEeC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-KHPVTSIEWSP 381 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-~~~I~~v~~sp 381 (479)
..+++..|+.||++ .+||.-..+|.+.|....-.+ .+..+... ......+.|+-
T Consensus 215 ~~~~i~~iavSpng-~~iAl~t~~g~l~v~ssDf~~----~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 215 SDGPIIKIAVSPNG-KFIALFTDSGNLWVVSSDFSE----KLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred CCCCeEEEEECCCC-CEEEEEECCCCEEEEECcccc----eeEEeecCcCCCCcEEEEEC
Confidence 24579999999999 899999999999998865544 45555443 34567788875
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.01 E-value=0.3 Score=49.15 Aligned_cols=184 Identities=14% Similarity=0.179 Sum_probs=95.6
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
+-...-....+.++|++ ++++. +.+|.-.||.... ... . . .+......|.+.
T Consensus 28 lg~~~~~p~~ls~npng-r~v~V-~g~geY~iyt~~~---------------------~r~-k-~---~G~g~~~vw~~~ 79 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNG-RFVLV-CGDGEYEIYTALA---------------------WRN-K-A---FGSGLSFVWSSR 79 (443)
T ss_dssp EEE-SS--SEEEE-TTS-SEEEE-EETTEEEEEETTT---------------------TEE-E-E---EEE-SEEEE-TS
T ss_pred CCCCCcCCeeEEECCCC-CEEEE-EcCCEEEEEEccC---------------------Ccc-c-c---cCceeEEEEecC
Confidence 33445568999999999 55555 5567788887332 111 1 1 235667889983
Q ss_pred CCCeEEEEeCCCeEEEE-ecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 245 APGRLVSGDCNSCIHLW-EPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lw-d~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
+ .+|+-...++|.|+ ++..... ..+.. ...+..|-. |. +|+..+. +.|.+||..+++ .+..+...
T Consensus 80 n--~yAv~~~~~~I~I~kn~~~~~~-----k~i~~-~~~~~~If~---G~-LL~~~~~-~~i~~yDw~~~~-~i~~i~v~ 145 (443)
T PF04053_consen 80 N--RYAVLESSSTIKIYKNFKNEVV-----KSIKL-PFSVEKIFG---GN-LLGVKSS-DFICFYDWETGK-LIRRIDVS 145 (443)
T ss_dssp S--EEEEE-TTS-EEEEETTEE-TT-----------SS-EEEEE----SS-SEEEEET-TEEEEE-TTT---EEEEESS-
T ss_pred c--cEEEEECCCeEEEEEcCccccc-----eEEcC-CcccceEEc---Cc-EEEEECC-CCEEEEEhhHcc-eeeEEecC
Confidence 3 78888888999996 4432211 11111 123555543 66 6666654 489999999885 55555532
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC------CCC-CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLL------KGG-DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~------~~~-~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+|..+.|++++ .++|..+.+ .+.|++.... ..+ ...+..+..-...|.+..|.-+ .++.|. .. .|
T Consensus 146 --~vk~V~Ws~~g-~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT-~~-~l 217 (443)
T PF04053_consen 146 --AVKYVIWSDDG-ELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTT-SN-HL 217 (443)
T ss_dssp --E-EEEEE-TTS-SEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE--TT-EE
T ss_pred --CCcEEEEECCC-CEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--EEEEEc-CC-eE
Confidence 48999999998 777777654 6677665433 000 0023333333678999999852 344443 33 77
Q ss_pred EE
Q 039302 397 TI 398 (479)
Q Consensus 397 ~i 398 (479)
+.
T Consensus 218 kY 219 (443)
T PF04053_consen 218 KY 219 (443)
T ss_dssp EE
T ss_pred EE
Confidence 76
No 352
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.01 E-value=0.018 Score=45.07 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=67.8
Q ss_pred eEEEEe---CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 236 GYAIDW---NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 236 v~~l~~---s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
|.+|++ ..++...|++|+.|..|++|+-..- . ..+ ..+..|.+++-...+ .|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---~---~Ei-~e~~~v~~L~~~~~~--~F~Y~l~NGTVGvY~~~~ 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---V---AEI-TETDKVTSLCSLGGG--RFAYALANGTVGVYDRSQ 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE---E---EEE-ecccceEEEEEcCCC--EEEEEecCCEEEEEeCcc
Confidence 445554 4455569999999999999985431 1 112 235678888877664 699999999999997643
Q ss_pred CCceeeEEecCCCCEEEEEE---cCCCCcEEEEEeCCCeEE
Q 039302 313 GKSALMSFKAHNADVNVISW---NRLASCLLASGSDDGTFS 350 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~---~p~~~~~l~sgs~dg~i~ 350 (479)
. +-..+. ...++++.+ +.++..-|++|-.+|.|-
T Consensus 73 R---lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 R---LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred e---eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2 233332 233555554 445556899999999874
No 353
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.91 E-value=0.061 Score=42.22 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=69.1
Q ss_pred EEEEEE---CCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC
Q 039302 283 VEDLQW---SPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG 359 (479)
Q Consensus 283 V~~l~~---sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~ 359 (479)
|+++++ ..++.+.|++||.|..||+|+-.. .+..+.. ...|++++-... ..|+.+..+|+|-+|+-..
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~~--- 72 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---IVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRSQ--- 72 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---EEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCcc---
Confidence 455554 445667999999999999997653 4444443 355777766654 4799999999999998643
Q ss_pred CCceEEEeecCCCCeEEEEEeCC---CCCEEEEEeCCCcEE
Q 039302 360 GDSVVAHFEYHKHPVTSIEWSPH---EGSTLAVSSADNQLT 397 (479)
Q Consensus 360 ~~~~~~~~~~h~~~I~~v~~sp~---~~~~las~s~Dg~I~ 397 (479)
.+-..+. +..++++.+..- +-.-|++|-.+|.|-
T Consensus 73 ---RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 73 ---RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 2333332 334677766542 234789998888874
No 354
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.91 E-value=0.019 Score=61.53 Aligned_cols=200 Identities=14% Similarity=0.114 Sum_probs=118.1
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-ceEEEEeCCCCCCe-
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-EGYAIDWNPVAPGR- 248 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~s~~~~~~- 248 (479)
.-+.++.++.-..++| ++..+.+.|+-....+....... .........+..++.-|.. ++..+..+++....
T Consensus 43 ~sn~la~sn~ysl~Fa-~~nsk~L~vfgtknlLi~~it~D-----~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~ 116 (1405)
T KOG3630|consen 43 SSNNLAISNSYSLFFA-ASNSKSLAVFGTKNLLIDHITSD-----STNSLVDADENLTFKVEKEIPIVIFVCFHDATDSV 116 (1405)
T ss_pred hhhhhhcccccceEEE-ecCCcceeeeccccceeeccccc-----ccccccccccccceeeeccccceEEEeccCCceEE
Confidence 3456677776644444 46667777776554321110000 0011112233355555554 67777777775522
Q ss_pred EEEEeCCCeEEEEecCCCCccccC-CCCccc------CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVD-PNPFIG------HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~-~~~~~~------h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++..+++-.|..||+.+-...... ..++.. ...-+.++.|+|.-...++.+..|+.|++.-+......+.++
T Consensus 117 v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~- 195 (1405)
T KOG3630|consen 117 VVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSF- 195 (1405)
T ss_pred EEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhccc-
Confidence 233344447899999764321100 111222 233467889999887778899999999998877654333332
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec----CCCCeEEEEEeCCC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----HKHPVTSIEWSPHE 383 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----h~~~I~~v~~sp~~ 383 (479)
.....+++++|+|.| ..++.|-..|++.-|-..-.. ...+.. -...|.+|.|-...
T Consensus 196 p~t~~~Tav~WSprG-KQl~iG~nnGt~vQy~P~lei-----k~~ip~Pp~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 196 PVTNSQTAVLWSPRG-KQLFIGRNNGTEVQYEPSLEI-----KSEIPEPPVEENYRVLSVTWLSTQ 255 (1405)
T ss_pred CcccceeeEEecccc-ceeeEecCCCeEEEeecccce-----eecccCCCcCCCcceeEEEEecce
Confidence 345678999999999 899999999999887643221 111111 14679999998644
No 355
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.86 E-value=0.3 Score=44.16 Aligned_cols=141 Identities=13% Similarity=0.100 Sum_probs=87.0
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
+.+++.|+..+.+.--|..+++.... . .. ...+.+-+.- -+. +++.|...|.+.+.+..++.. ...+..-..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We--~-il--g~RiE~sa~v-vgd-fVV~GCy~g~lYfl~~~tGs~-~w~f~~~~~ 94 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWE--A-IL--GVRIECSAIV-VGD-FVVLGCYSGGLYFLCVKTGSQ-IWNFVILET 94 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEee--h-hh--CceeeeeeEE-ECC-EEEEEEccCcEEEEEecchhh-eeeeeehhh
Confidence 34888888889888888888655221 1 11 2233333322 244 788999999999999999853 333332221
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
--......+++ .++..|+.|+..+..|.++.. ++...+--.+.-.+-+..|-+ ..|..+...|.|.--.
T Consensus 95 vk~~a~~d~~~-glIycgshd~~~yalD~~~~~----cVykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt 163 (354)
T KOG4649|consen 95 VKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYG----CVYKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVT 163 (354)
T ss_pred hccceEEcCCC-ceEEEecCCCcEEEecccccc----eEEecccCCceeccceecCCC-ceEEEEeccceEEEEc
Confidence 11222345556 799999999999999999887 677665433333444555633 3344444455544333
No 356
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.83 E-value=0.052 Score=55.74 Aligned_cols=109 Identities=17% Similarity=0.199 Sum_probs=76.0
Q ss_pred CCCCCcEEEEEeCCCcEEEEEcCC----CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC-----
Q 039302 289 SPTESDVFASCSVDGNIAIWDTRV----GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG----- 359 (479)
Q Consensus 289 sp~~~~~l~s~s~dg~I~iwD~~~----~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~----- 359 (479)
.++|+..++ .++.|.+.|.++ .. .+..+..-......+.++|++..+++++..+.+|.|+|+.+.+.
T Consensus 285 vkdGK~~~V---~gn~V~VID~~t~~~~~~-~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI---GGSKVPVVDGRKAANAGS-ALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE---CCCEEEEEECCccccCCc-ceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 456763333 267899999998 32 23333334556788999999977888888899999999988652
Q ss_pred ---CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 360 ---GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 360 ---~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
....+....--. .-...+|.+++ +.+.|.-.|.+|..|++..
T Consensus 361 ~~~~~~vvaevevGl-GPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPELGL-GPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeeccCC-CcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 011233333322 33467888865 7888888999999999976
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.79 E-value=0.41 Score=47.45 Aligned_cols=202 Identities=12% Similarity=0.123 Sum_probs=129.6
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..-+.+..++.+.++.++...+..|.+.|... ........ -......+++++++. .+
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~---------------------~~~~~~~~-vG~~P~~~~~~~~~~-~v 130 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTAT---------------------NTVLGSIP-VGLGPVGLAVDPDGK-YV 130 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcc---------------------cceeeEee-eccCCceEEECCCCC-EE
Confidence 34456788888877888877789999999655 22222221 112567899999997 55
Q ss_pred EEEeC---CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee-E---Eec
Q 039302 250 VSGDC---NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM-S---FKA 322 (479)
Q Consensus 250 ~sg~~---dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~-~---~~~ 322 (479)
..+.. ++++.+.|..+..... ....+. .+ ..++++|++...+++-..++.|.+.|..... ... . ...
T Consensus 131 YV~n~~~~~~~vsvid~~t~~~~~---~~~vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~-v~~~~~~~~~~ 204 (381)
T COG3391 131 YVANAGNGNNTVSVIDAATNKVTA---TIPVGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS-VVRGSVGSLVG 204 (381)
T ss_pred EEEecccCCceEEEEeCCCCeEEE---EEecCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc-eeccccccccc
Confidence 55444 6788888877654422 122222 23 8899999999566666689999999977653 221 0 111
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCC--CeEEEEeCCCCCCCCceEEE-eecCCCCeEEEEEeCCCCCEEEEE-eCCCcEEE
Q 039302 323 HNADVNVISWNRLASCLLASGSDD--GTFSIHDLRLLKGGDSVVAH-FEYHKHPVTSIEWSPHEGSTLAVS-SADNQLTI 398 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~d--g~i~iwDlr~~~~~~~~~~~-~~~h~~~I~~v~~sp~~~~~las~-s~Dg~I~i 398 (479)
-...-..+.++|++....++-..+ +.+...|..+.. .... ...-......+..+|.+ ..+.+. +..+.+.+
T Consensus 205 ~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~----v~~~~~~~~~~~~~~v~~~p~g-~~~yv~~~~~~~V~v 279 (381)
T COG3391 205 VGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGN----VTATDLPVGSGAPRGVAVDPAG-KAAYVANSQGGTVSV 279 (381)
T ss_pred cCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCce----EEEeccccccCCCCceeECCCC-CEEEEEecCCCeEEE
Confidence 122346788999995555555554 689999988876 3333 22111145678899976 555544 55688999
Q ss_pred EECCCCC
Q 039302 399 WDLSLEK 405 (479)
Q Consensus 399 wdl~~~~ 405 (479)
-|.....
T Consensus 280 id~~~~~ 286 (381)
T COG3391 280 IDGATDR 286 (381)
T ss_pred EeCCCCc
Confidence 8887753
No 358
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.0079 Score=63.94 Aligned_cols=102 Identities=21% Similarity=0.342 Sum_probs=77.2
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe
Q 039302 295 VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV 374 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I 374 (479)
.++.|+..|.+...|.+..-.+...-.....+|++++|+.+| .+++.|-.+|.|.+||+...+ +++.+..|..+.
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg-~~l~~G~~~G~V~v~D~~~~k----~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDG-SLLLAGLGDGHVTVWDMHRAK----ILKVITEHGAPV 175 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCC-ceeccccCCCcEEEEEccCCc----ceeeeeecCCcc
Confidence 688899999999999987532333334456799999999999 899999999999999999887 788887777776
Q ss_pred EEEE---EeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 375 TSIE---WSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 375 ~~v~---~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+.+- |...+ ..+.++..-|. +|.+...
T Consensus 176 t~vi~v~~t~~n-S~llt~D~~Gs--f~~lv~n 205 (1206)
T KOG2079|consen 176 TGVIFVGRTSQN-SKLLTSDTGGS--FWKLVFN 205 (1206)
T ss_pred ceEEEEEEeCCC-cEEEEccCCCc--eEEEEec
Confidence 6654 33333 56777766666 6665443
No 359
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.78 E-value=0.0028 Score=55.84 Aligned_cols=145 Identities=15% Similarity=0.170 Sum_probs=84.2
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
|..-+.+|.|+-++++...... ....+ +.+..--+.....++.|+.+|.|.+|.........-.+......|-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~-rse~~------~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~ 105 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESC-RSERF------IDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID 105 (238)
T ss_pred hccccCCcccccchhhhhhhhh-hhhhh------hhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccce
Confidence 4444558888877775432211 01111 1222222222337899999999999987733211111111222333
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-CCeEEEEEeCCCCCEEEEE--eCCCcEEEEECCCCC
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-HPVTSIEWSPHEGSTLAVS--SADNQLTIWDLSLEK 405 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-~~I~~v~~sp~~~~~las~--s~Dg~I~iwdl~~~~ 405 (479)
++--+-+.+.+..+++.||.|+.|++.-.+ .+-....|+ .++.....+..+ ..++.+ |.|..++.|++....
T Consensus 106 ~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k----~~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~~ 180 (238)
T KOG2444|consen 106 LGIPNGRDSSLGCVGAQDGRIRACNIKPNK----VLGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEKIK 180 (238)
T ss_pred eccccccccceeEEeccCCceeeeccccCc----eeeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhhhh
Confidence 333232233689999999999999998776 455555666 566555555533 667777 778888888887654
No 360
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.75 E-value=0.19 Score=51.82 Aligned_cols=110 Identities=7% Similarity=-0.011 Sum_probs=72.3
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc------
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS------ 315 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~------ 315 (479)
.++++ +... .++.|.+.|..+..........+..-......+.++|+++.+++++..+.+|.|.|+.+.+.
T Consensus 285 vkdGK-~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGK-FKTI--GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCC-EEEE--CCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 34555 3333 25789999987610000001112223456778999999997778888899999999987542
Q ss_pred -----eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 316 -----ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 316 -----~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
.+..... ...-...+|.+++ +.+.|-.-|..|..|++..
T Consensus 362 ~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 362 KPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEEEehHH
Confidence 1122222 2233457899988 7888888999999999875
No 361
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.69 E-value=0.22 Score=49.66 Aligned_cols=133 Identities=15% Similarity=0.108 Sum_probs=82.0
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC-CC
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH-NA 325 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h-~~ 325 (479)
.++.++.+|.+..+|+.++.. |. ..+. ....+.. .+. .+..++.+|.|..+|..+++ .+-....- ..
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~~W~---~~~~----~~~~~~~--~~~-~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~ 326 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQIVWK---REYG----SVNDFAV--DGG-RIYLVDQNDRVYALDTRGGV-ELWSQSDLLHR 326 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCEEEe---ecCC----CccCcEE--ECC-EEEEEcCCCeEEEEECCCCc-EEEcccccCCC
Confidence 677778899999999987654 22 1111 1111222 234 56777889999999998875 22222111 11
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE-EEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS-IEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~-v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
...+.... + ..|+.++.+|.|.+.|..+++ .+...+.....+.+ ..+. + ..|+.++.||.|+.+++
T Consensus 327 ~~~sp~v~--~-g~l~v~~~~G~l~~ld~~tG~----~~~~~~~~~~~~~s~P~~~--~-~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 327 LLTAPVLY--N-GYLVVGDSEGYLHWINREDGR----FVAQQKVDSSGFLSEPVVA--D-DKLLIQARDGTVYAITR 393 (394)
T ss_pred cccCCEEE--C-CEEEEEeCCCEEEEEECCCCC----EEEEEEcCCCcceeCCEEE--C-CEEEEEeCCceEEEEeC
Confidence 11222222 3 567888999999999999887 66666543333332 2222 3 57888899999988765
No 362
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.61 E-value=0.044 Score=58.57 Aligned_cols=100 Identities=16% Similarity=0.266 Sum_probs=68.6
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
..++.|++.|.|-..|+... ..++..-..-.++|.+++|+.+|. +++.|-.+|.|.+||
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~n--------------------L~~~~~ne~v~~~Vtsvafn~dg~-~l~~G~~~G~V~v~D 158 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGN--------------------LGPLHQNERVQGPVTSVAFNQDGS-LLLAGLGDGHVTVWD 158 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcc--------------------cchhhcCCccCCcceeeEecCCCc-eeccccCCCcEEEEE
Confidence 57888899999999998873 233222223356999999999998 999999999999999
Q ss_pred cCCCCccccCCCCcccCCCcEEE---EEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 263 PASDATWNVDPNPFIGHAASVED---LQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 263 ~~~~~~~~~~~~~~~~h~~~V~~---l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
+..+... +.+..|..+++. +.+...+. .+.++..-|. +|.+
T Consensus 159 ~~~~k~l----~~i~e~~ap~t~vi~v~~t~~nS-~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 159 MHRAKIL----KVITEHGAPVTGVIFVGRTSQNS-KLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccCCcce----eeeeecCCccceEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence 9875543 223334444333 33444444 6777776675 5544
No 363
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.54 E-value=0.77 Score=43.79 Aligned_cols=199 Identities=10% Similarity=0.014 Sum_probs=107.2
Q ss_pred EEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCC
Q 039302 176 RAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN 255 (479)
Q Consensus 176 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~d 255 (479)
.|.+....++.+--..+.|+-|+.... ....+.... .+.++..-..+. +|+++.
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g----------------------~~~~~~~p~-~~~~~~~~d~~g-~Lv~~~-- 84 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETG----------------------KKRVFPSPG-GFSSGALIDAGG-RLIACE-- 84 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcC----------------------ceEEEECCC-CcccceeecCCC-eEEEEc--
Confidence 466766567777667788888887641 112232222 223333333332 566654
Q ss_pred CeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCcEEEEEe-----CC---CcEEEEEcC-CCCceeeEEecCCC
Q 039302 256 SCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESDVFASCS-----VD---GNIAIWDTR-VGKSALMSFKAHNA 325 (479)
Q Consensus 256 g~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s-----~d---g~I~iwD~~-~~~~~~~~~~~h~~ 325 (479)
..+.++++.++...........+. ....+++...|+|..+|-+.+ .. ..-.+|-+. .+. ....+..+-.
T Consensus 85 ~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~-~~~l~~~~~~ 163 (307)
T COG3386 85 HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGG-VVRLLDDDLT 163 (307)
T ss_pred cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCC-EEEeecCcEE
Confidence 345566665443312111222222 246788999999983333333 11 011344443 222 3333344455
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC--CCCCCc-eEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC-cEEEEEC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRL--LKGGDS-VVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN-QLTIWDL 401 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~--~~~~~~-~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg-~I~iwdl 401 (479)
.-|.|+|+|++..++++=+..+.|.-|++.. +..... ....+....+..-.++...++ ++.+++..+| .|.+|+.
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v~~~~p 242 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRVVRFNP 242 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceEEEECC
Confidence 5689999999977777777778999888763 211111 122233344555566776644 6664444443 8999988
Q ss_pred C
Q 039302 402 S 402 (479)
Q Consensus 402 ~ 402 (479)
.
T Consensus 243 d 243 (307)
T COG3386 243 D 243 (307)
T ss_pred C
Confidence 7
No 364
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.51 E-value=0.0093 Score=52.62 Aligned_cols=105 Identities=13% Similarity=0.124 Sum_probs=60.4
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC-CC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN-AD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~-~~ 326 (479)
.++.|+.+|.|.+|+.+..+... ..+..-..+|.++--.-+..++..+++.||.|+.|++.-.+ .+-....|. .+
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~---d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k-~~g~~g~h~~~~ 147 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHS---DRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK-VLGYVGQHNFES 147 (238)
T ss_pred eEEeecccceEEEecCCccchHH---HhhhcccccceeccccccccceeEEeccCCceeeeccccCc-eeeeeccccCCC
Confidence 89999999999999986432211 11111122333332222222388889999999999998765 344444454 33
Q ss_pred EEEEEEcCCCCcEEEEE--eCCCeEEEEeCCCC
Q 039302 327 VNVISWNRLASCLLASG--SDDGTFSIHDLRLL 357 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sg--s~dg~i~iwDlr~~ 357 (479)
+.....+..+ .+|+.. |.|..++.|++...
T Consensus 148 ~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 148 GEELIVVGSD-EFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred cceeEEecCC-ceEEeeccccchhhhhcchhhh
Confidence 4333333333 455555 56666666666543
No 365
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.47 E-value=0.28 Score=49.55 Aligned_cols=124 Identities=10% Similarity=0.183 Sum_probs=78.0
Q ss_pred CCCceEEEEeCCCCCC---eEEEEeCCCeEEEEecCCCCc----cccCCCCcccCCCc--EEEEEECCCCCcEEEEEeCC
Q 039302 232 HKDEGYAIDWNPVAPG---RLVSGDCNSCIHLWEPASDAT----WNVDPNPFIGHAAS--VEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~---~l~sg~~dg~I~lwd~~~~~~----~~~~~~~~~~h~~~--V~~l~~sp~~~~~l~s~s~d 302 (479)
.=..|+++.|.|-+.. .|++.-....|.+|.+..... +.....--.+..-+ -..+.|+|... +|++-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecC
Confidence 3347899999997432 456666688999999853211 11100000000111 24578999988 77776666
Q ss_pred CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 303 GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 303 g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
..-.+++++.....+..-....+-|.|.+|.++|.+++++.+..=.-+|||-..
T Consensus 134 dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 665677887665433332345677999999999966666666656678998643
No 366
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.41 E-value=1.2 Score=44.29 Aligned_cols=158 Identities=15% Similarity=0.156 Sum_probs=104.8
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe--CCCcEEEEEcCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS--VDGNIAIWDTRV 312 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~dg~I~iwD~~~ 312 (479)
.-..++.++.+...+++...+..|.+.|..+..... ....+ .....++++|+++.+.++-. .++++.+.|..+
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~---~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t 149 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG---SIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAAT 149 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCcccceee---Eeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCC
Confidence 345678888887556666667899999965543321 11112 25678999999986666666 478999999888
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE-----EeecCCCCeEEEEEeCCCCCEE
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA-----HFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~-----~~~~h~~~I~~v~~sp~~~~~l 387 (479)
.+ ..........+ ..+++.|++...+++-..++.|.+.|..... ... .... ...-..+.++|++....
T Consensus 150 ~~-~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~----v~~~~~~~~~~~-~~~P~~i~v~~~g~~~y 222 (381)
T COG3391 150 NK-VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS----VVRGSVGSLVGV-GTGPAGIAVDPDGNRVY 222 (381)
T ss_pred Ce-EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc----eecccccccccc-CCCCceEEECCCCCEEE
Confidence 75 44444433344 8899999996677777789999999976654 221 1221 22336788999774444
Q ss_pred EEEeCC--CcEEEEECCCC
Q 039302 388 AVSSAD--NQLTIWDLSLE 404 (479)
Q Consensus 388 as~s~D--g~I~iwdl~~~ 404 (479)
++...+ +.+...|....
T Consensus 223 V~~~~~~~~~v~~id~~~~ 241 (381)
T COG3391 223 VANDGSGSNNVLKIDTATG 241 (381)
T ss_pred EEeccCCCceEEEEeCCCc
Confidence 444444 68888888775
No 367
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.031 Score=55.18 Aligned_cols=126 Identities=11% Similarity=0.155 Sum_probs=82.5
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCC------eEEEEeCCCeEEEEecCCCCcccc---CCCCcccCCCcEEEEEECCCCC
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPG------RLVSGDCNSCIHLWEPASDATWNV---DPNPFIGHAASVEDLQWSPTES 293 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~------~l~sg~~dg~I~lwd~~~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~ 293 (479)
++.+..+.-|.. |.-+.+.|+..+ .-+.|-.+..|+-||++-.+...+ ....+.. ...-.|++-..+|
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~-k~nFsc~aTT~sG- 442 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYST-KNNFSCFATTESG- 442 (644)
T ss_pred ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccccc-ccccceeeecCCc-
Confidence 566666766665 777788887653 234566788999999975444111 0111111 2234555555444
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCC
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR 355 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr 355 (479)
++++||.+|.||+||- .+......+.+-..+|..|..+.+|..+|+|+ +..+.+.+++
T Consensus 443 -~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 443 -YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred -eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 7999999999999997 44334455678889999999999995444443 5677777765
No 368
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.36 E-value=1.3 Score=44.43 Aligned_cols=205 Identities=11% Similarity=0.071 Sum_probs=104.6
Q ss_pred EEEecCCCcEEEEEeCC----------ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc--eEEEEeC
Q 039302 175 IRAMSQNPHICASWADT----------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE--GYAIDWN 242 (479)
Q Consensus 175 v~~~p~~~~~lat~s~d----------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~s 242 (479)
+.|.+++..++.+.... ..|+.|.+.+.. ......+...... ...+..+
T Consensus 175 ~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~-------------------~~d~lvfe~~~~~~~~~~~~~s 235 (414)
T PF02897_consen 175 VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQ-------------------SEDELVFEEPDEPFWFVSVSRS 235 (414)
T ss_dssp EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-G-------------------GG-EEEEC-TTCTTSEEEEEE-
T ss_pred EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCCh-------------------HhCeeEEeecCCCcEEEEEEec
Confidence 99999987777775433 247888887632 1222444443332 5688899
Q ss_pred CCCCCeEEE-EeCC---CeEEEEecCCCCccccCCCCcccCCCcE-EEEEECCCCCcEEEEEe---CCCcEEEEEcCCCC
Q 039302 243 PVAPGRLVS-GDCN---SCIHLWEPASDATWNVDPNPFIGHAASV-EDLQWSPTESDVFASCS---VDGNIAIWDTRVGK 314 (479)
Q Consensus 243 ~~~~~~l~s-g~~d---g~I~lwd~~~~~~~~~~~~~~~~h~~~V-~~l~~sp~~~~~l~s~s---~dg~I~iwD~~~~~ 314 (479)
+++. +|+. .... ..+.+.++............+......+ ..+... .+. +++... ..+.|.-.++....
T Consensus 236 ~d~~-~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~-~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 236 KDGR-YLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDR-LYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp TTSS-EEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTE-EEEEE-TT-TT-EEEEEETTSTS
T ss_pred Cccc-EEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCE-EEEeeCCCCCCcEEEEecccccc
Confidence 9988 5443 3333 2477777765310000011222223333 333333 333 444432 34667777887764
Q ss_pred c--eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeCCCCCEEEE
Q 039302 315 S--ALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 315 ~--~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp~~~~~las 389 (479)
. ....+..+...+.-..+...+..+++....++ .|+++++.... ....+.. -.+.|..+...+....++++
T Consensus 313 ~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~----~~~~~~~p~~g~v~~~~~~~~~~~~~~~ 388 (414)
T PF02897_consen 313 PAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGK----ESREIPLPEAGSVSGVSGDFDSDELRFS 388 (414)
T ss_dssp GGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TE----EEEEEESSSSSEEEEEES-TT-SEEEEE
T ss_pred cccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCc----EEeeecCCcceEEeccCCCCCCCEEEEE
Confidence 2 12244556554333334444446777776666 58899998222 2333332 23446666666655455555
Q ss_pred EeC---CCcEEEEECCCCC
Q 039302 390 SSA---DNQLTIWDLSLEK 405 (479)
Q Consensus 390 ~s~---Dg~I~iwdl~~~~ 405 (479)
-+. -++|..||+.+++
T Consensus 389 ~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 389 YSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp EEETTEEEEEEEEETTTTC
T ss_pred EeCCCCCCEEEEEECCCCC
Confidence 443 4578888887764
No 369
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.33 E-value=1.3 Score=44.11 Aligned_cols=143 Identities=14% Similarity=0.071 Sum_probs=80.0
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCC-CcccCC-CcEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPN-PFIGHA-ASVEDLQWSP--TESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~-~~~~h~-~~V~~l~~sp--~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.++.++.+|.+..+|..++.. |..... ....+. .....+.-+| .+. .++.++.+|.+..+|..+++ .+-....
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~-~vy~~~~~g~l~ald~~tG~-~~W~~~~ 284 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG-VVYALAYNGNLVALDLRSGQ-IVWKREY 284 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC-EEEEEEcCCeEEEEECCCCC-EEEeecC
Confidence 567777889999988877643 221110 000000 0011111122 134 56667789999999999886 2322211
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-CCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-KHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.....+.. .+ ..|..++.+|.+..+|..+++ .+-....- .....+.... + ..|+.++.||.|.+.|.
T Consensus 285 --~~~~~~~~--~~-~~vy~~~~~g~l~ald~~tG~----~~W~~~~~~~~~~~sp~v~--~-g~l~v~~~~G~l~~ld~ 352 (394)
T PRK11138 285 --GSVNDFAV--DG-GRIYLVDQNDRVYALDTRGGV----ELWSQSDLLHRLLTAPVLY--N-GYLVVGDSEGYLHWINR 352 (394)
T ss_pred --CCccCcEE--EC-CEEEEEcCCCeEEEEECCCCc----EEEcccccCCCcccCCEEE--C-CEEEEEeCCCEEEEEEC
Confidence 11112222 23 466777889999999998876 33322211 1112222232 3 57788899999999998
Q ss_pred CCC
Q 039302 402 SLE 404 (479)
Q Consensus 402 ~~~ 404 (479)
.++
T Consensus 353 ~tG 355 (394)
T PRK11138 353 EDG 355 (394)
T ss_pred CCC
Confidence 876
No 370
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=1.1 Score=41.45 Aligned_cols=167 Identities=14% Similarity=0.167 Sum_probs=101.6
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
|-...+.+|.|+|+.+ .|.+..+...-.||=...+..... .++.+- .....|.+.-.+. +.++--.++.+.++-+
T Consensus 83 g~~~nvS~LTynp~~r-tLFav~n~p~~iVElt~~Gdlirt--iPL~g~-~DpE~Ieyig~n~-fvi~dER~~~l~~~~v 157 (316)
T COG3204 83 GETANVSSLTYNPDTR-TLFAVTNKPAAIVELTKEGDLIRT--IPLTGF-SDPETIEYIGGNQ-FVIVDERDRALYLFTV 157 (316)
T ss_pred cccccccceeeCCCcc-eEEEecCCCceEEEEecCCceEEE--eccccc-CChhHeEEecCCE-EEEEehhcceEEEEEE
Confidence 4445699999999998 777766666666665545444332 333332 2345667776655 5555556788888776
Q ss_pred CCCCc---------eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------CCCe
Q 039302 311 RVGKS---------ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------KHPV 374 (479)
Q Consensus 311 ~~~~~---------~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------~~~I 374 (479)
..... ++......+.+.-.++|.|.. ..|..+-.-.-+.||......... .+.....+ -..|
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~-~~l~~aKEr~P~~I~~~~~~~~~l-~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVD-HRLFVAKERNPIGIFEVTQSPSSL-SVHASLDPTADRDLFVLDV 235 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCC-ceEEEEEccCCcEEEEEecCCccc-ccccccCcccccceEeecc
Confidence 65421 111112226678899999999 555555565656666554322100 11111111 2357
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 375 TSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 375 ~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.++.|++..+.+|+-+.+++.+.-.|+.-.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 788999877788888888888888877654
No 371
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.03 E-value=0.19 Score=54.29 Aligned_cols=148 Identities=12% Similarity=0.099 Sum_probs=91.4
Q ss_pred CcceeEEEEecCCCcEEEEE-eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE---ecCCCCceEEEEeCCC
Q 039302 169 QGCVNRIRAMSQNPHICASW-ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK---FGGHKDEGYAIDWNPV 244 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~s~~ 244 (479)
.-.|..+...++.....+.- +.+-.|..||+......... +..++.. ......-+.++.|+|.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~-------------~~~pl~~s~ts~ek~vf~~~~~wnP~ 166 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE-------------TTVPLKNSATSFEKPVFQLKNVWNPL 166 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh-------------hccccccccchhccccccccccccCC
Confidence 34566666777753333222 33446889999774322210 1122111 1112235678999998
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe---
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK--- 321 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~--- 321 (479)
-....+.+..|+.|++..+....... .. ..-+..+++++|+|.|. .++.|-..|++.-|-..-.. ...+.
T Consensus 167 vp~n~av~l~dlsl~V~~~~~~~~~v---~s-~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~lei--k~~ip~Pp 239 (1405)
T KOG3630|consen 167 VPLNSAVDLSDLSLRVKSTKQLAQNV---TS-FPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLEI--KSEIPEPP 239 (1405)
T ss_pred ccchhhhhccccchhhhhhhhhhhhh---cc-cCcccceeeEEeccccc-eeeEecCCCeEEEeecccce--eecccCCC
Confidence 87778888899999998875432211 11 22356789999999999 89999999999988654321 11111
Q ss_pred -cCCCCEEEEEEcCCC
Q 039302 322 -AHNADVNVISWNRLA 336 (479)
Q Consensus 322 -~h~~~v~~l~~~p~~ 336 (479)
.-...|.+|+|-...
T Consensus 240 ~~e~yrvl~v~Wl~t~ 255 (1405)
T KOG3630|consen 240 VEENYRVLSVTWLSTQ 255 (1405)
T ss_pred cCCCcceeEEEEecce
Confidence 114679999998766
No 372
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.99 E-value=1.2 Score=40.49 Aligned_cols=141 Identities=17% Similarity=0.099 Sum_probs=86.1
Q ss_pred EecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeCCCCCCeEEEEeCC
Q 039302 177 AMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWNPVAPGRLVSGDCN 255 (479)
Q Consensus 177 ~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~~l~sg~~d 255 (479)
..++...+++.||..+.+.--|..+ ++.... .-+-.-+..++- -++ +++.|...
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~s---------------------G~~~We~ilg~RiE~sa~v---vgd-fVV~GCy~ 72 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQS---------------------GNLIWEAILGVRIECSAIV---VGD-FVVLGCYS 72 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCC---------------------CcEEeehhhCceeeeeeEE---ECC-EEEEEEcc
Confidence 4455567888889999988888776 222211 111122333333 344 89999999
Q ss_pred CeEEEEecCCCCc-cccCCCCcccCCCcE-EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEc
Q 039302 256 SCIHLWEPASDAT-WNVDPNPFIGHAASV-EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWN 333 (479)
Q Consensus 256 g~I~lwd~~~~~~-~~~~~~~~~~h~~~V-~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~ 333 (479)
|.+++.+.+++.. |. +... ..| ...+..+++. ++..|+.|++....|.++.. ++.+.+.......+-+.+
T Consensus 73 g~lYfl~~~tGs~~w~-----f~~~-~~vk~~a~~d~~~g-lIycgshd~~~yalD~~~~~-cVykskcgG~~f~sP~i~ 144 (354)
T KOG4649|consen 73 GGLYFLCVKTGSQIWN-----FVIL-ETVKVRAQCDFDGG-LIYCGSHDGNFYALDPKTYG-CVYKSKCGGGTFVSPVIA 144 (354)
T ss_pred CcEEEEEecchhheee-----eeeh-hhhccceEEcCCCc-eEEEecCCCcEEEecccccc-eEEecccCCceeccceec
Confidence 9999999998744 32 1111 111 1234567777 99999999999999999875 666655444444444556
Q ss_pred CCCCcEEEEEeCCCeEEE
Q 039302 334 RLASCLLASGSDDGTFSI 351 (479)
Q Consensus 334 p~~~~~l~sgs~dg~i~i 351 (479)
|-. .-|..+...|.|.-
T Consensus 145 ~g~-~sly~a~t~G~vla 161 (354)
T KOG4649|consen 145 PGD-GSLYAAITAGAVLA 161 (354)
T ss_pred CCC-ceEEEEeccceEEE
Confidence 633 23333344454443
No 373
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.91 E-value=0.33 Score=49.03 Aligned_cols=129 Identities=13% Similarity=0.160 Sum_probs=81.4
Q ss_pred EEecCCcceeEEEEecCC----CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-----
Q 039302 164 RKVAHQGCVNRIRAMSQN----PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD----- 234 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----- 234 (479)
..++.-..|..+.|.|-+ +.+||. .....|.||.+....... .+.+..-..+-.
T Consensus 51 ~viGqFEhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e~----------------~K~l~sQtcEi~e~~pv 113 (671)
T PF15390_consen 51 KVIGQFEHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTER----------------NKLLMSQTCEIREPFPV 113 (671)
T ss_pred cEeeccceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCcccc----------------ccceeeeeeeccCCccc
Confidence 345667789999999964 678887 667899999997522111 122221111111
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
--.++-|+|... .|+.-.....-.++++........ ..+ .-.+-|.|.+|.++|..++++.+..=.-+|||-...
T Consensus 114 LpQGCVWHPk~~-iL~VLT~~dvSV~~sV~~d~srVk--aDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 114 LPQGCVWHPKKA-ILTVLTARDVSVLPSVHCDSSRVK--ADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CCCcccccCCCc-eEEEEecCceeEeeeeeeCCceEE--Eec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 123678999987 777766555545667655433221 112 345789999999999966666665556778886543
No 374
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=95.90 E-value=1.9 Score=42.05 Aligned_cols=140 Identities=6% Similarity=-0.007 Sum_probs=66.1
Q ss_pred EEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEeCCCCCCeEEEEeC
Q 039302 176 RAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDWNPVAPGRLVSGDC 254 (479)
Q Consensus 176 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~l~sg~~ 254 (479)
+|.++|.++|.++..+|.-.+|-++-. ...+..+.... .......+++... .|+-...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~--------------------t~~i~QLTdg~g~~~~g~~~s~~~~-~~~Yv~~ 100 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLA--------------------TGEITQLTDGPGDNTFGGFLSPDDR-ALYYVKN 100 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETT--------------------T-EEEE---SS-B-TTT-EE-TTSS-EEEEEET
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcc--------------------cCEEEECccCCCCCccceEEecCCC-eEEEEEC
Confidence 567778888888777877666655441 22233343332 2233456677776 6555545
Q ss_pred CCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC--CCCCcEEEEEeC----------------------CCcEEEEEc
Q 039302 255 NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS--PTESDVFASCSV----------------------DGNIAIWDT 310 (479)
Q Consensus 255 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~~l~s~s~----------------------dg~I~iwD~ 310 (479)
...|.-.|+.+.+... .+.-...-+-...|. .++. .++-.-. ...|.-.|+
T Consensus 101 ~~~l~~vdL~T~e~~~----vy~~p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl 175 (386)
T PF14583_consen 101 GRSLRRVDLDTLEERV----VYEVPDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL 175 (386)
T ss_dssp TTEEEEEETTT--EEE----EEE--TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred CCeEEEEECCcCcEEE----EEECCcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence 5678888887754321 122233334344553 2333 3332211 112444566
Q ss_pred CCCCceeeEEecCCCCEEEEEEcCCCCcEEEEE
Q 039302 311 RVGKSALMSFKAHNADVNVISWNRLASCLLASG 343 (479)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sg 343 (479)
++++ ...+..-...+.-+.|+|..+.+|+-|
T Consensus 176 ~tG~--~~~v~~~~~wlgH~~fsP~dp~li~fC 206 (386)
T PF14583_consen 176 KTGE--RKVVFEDTDWLGHVQFSPTDPTLIMFC 206 (386)
T ss_dssp TT----EEEEEEESS-EEEEEEETTEEEEEEEE
T ss_pred CCCc--eeEEEecCccccCcccCCCCCCEEEEe
Confidence 6654 333333456778888888886666665
No 375
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.85 E-value=1.3 Score=46.42 Aligned_cols=183 Identities=16% Similarity=0.132 Sum_probs=96.9
Q ss_pred cceeEEEEecCCCcEEEEEe-----CCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 170 GCVNRIRAMSQNPHICASWA-----DTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s-----~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+...+++|++..++++.. .++ .|.+++... .....+.+. ....-.|+
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg----------------------~~~~lt~g~--~~t~PsWs 405 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG----------------------VAVQVLEGH--SLTRPSWS 405 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC----------------------cceeeecCC--CCCCceEC
Confidence 35778899999976666652 233 444445432 111112232 36778999
Q ss_pred CCCCCeEEEEeCC------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEE---
Q 039302 243 PVAPGRLVSGDCN------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI--- 307 (479)
Q Consensus 243 ~~~~~~l~sg~~d------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~i--- 307 (479)
|++. .|++.... +.+.+.++..+.. .. ...+.|..+.|||+|. .++... +|.|.+
T Consensus 406 pDG~-~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~-----~~--~~~g~Issl~wSpDG~-RiA~i~-~g~v~Va~V 475 (591)
T PRK13616 406 LDAD-AVWVVVDGNTVVRVIRDPATGQLARTPVDASAV-----AS--RVPGPISELQLSRDGV-RAAMII-GGKVYLAVV 475 (591)
T ss_pred CCCC-ceEEEecCcceEEEeccCCCceEEEEeccCchh-----hh--ccCCCcCeEEECCCCC-EEEEEE-CCEEEEEEE
Confidence 9976 66665422 2233333322111 11 2346799999999999 444444 477766
Q ss_pred EEcCCCCcee---eEEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeC
Q 039302 308 WDTRVGKSAL---MSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSP 381 (479)
Q Consensus 308 wD~~~~~~~~---~~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp 381 (479)
-....+...+ ..+. .-...+..+.|..++ .+ +++..++...+|-+.-... ....+.. ...++.+|+=++
T Consensus 476 vr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~-~L-~V~~~~~~~~v~~v~vDG~---~~~~~~~~n~~~~v~~vaa~~ 550 (591)
T PRK13616 476 EQTEDGQYALTNPREVGPGLGDTAVSLDWRTGD-SL-VVGRSDPEHPVWYVNLDGS---NSDALPSRNLSAPVVAVAASP 550 (591)
T ss_pred EeCCCCceeecccEEeecccCCccccceEecCC-EE-EEEecCCCCceEEEecCCc---cccccCCCCccCceEEEecCC
Confidence 3322232111 1122 223336889999988 54 4555555555565443331 1111122 356777888776
Q ss_pred CCCCEEEEEeCCC
Q 039302 382 HEGSTLAVSSADN 394 (479)
Q Consensus 382 ~~~~~las~s~Dg 394 (479)
+ .++....++
T Consensus 551 -~--~iyv~~~~g 560 (591)
T PRK13616 551 -S--TVYVTDARA 560 (591)
T ss_pred -c--eEEEEcCCc
Confidence 2 344555566
No 376
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.83 E-value=0.84 Score=42.85 Aligned_cols=143 Identities=15% Similarity=0.186 Sum_probs=87.1
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE--------
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS-------- 319 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~-------- 319 (479)
.|+.|..+| +.++++.....+. ...+..+|..+...|.-+ .+++-+ |+.+.++++.........
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~-----~i~~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPT-----RILKLSSITQLSVLPELN-LLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred EEEEEECCC-EEEEEecCCccce-----eEeecceEEEEEEecccC-EEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 899998888 8999983322211 112334499999998877 555544 599999998865422100
Q ss_pred -----EecCCCCEEEEE--EcCCCCcEEEEEeCCCeEEEEeCCCCCCCC-ceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 320 -----FKAHNADVNVIS--WNRLASCLLASGSDDGTFSIHDLRLLKGGD-SVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 320 -----~~~h~~~v~~l~--~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~-~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
.......+...+ -...+...|+. .....|.+|......... .....+.. ...+.+++|.+ ..|+.|.
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v-a~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~---~~i~v~~ 155 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCV-AVKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLG---NKICVGT 155 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEE-EECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeC---CEEEEEe
Confidence 111223444444 12233234444 445589998887642212 25555554 57889999984 5677776
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
.++ ..+.|+.+.
T Consensus 156 ~~~-f~~idl~~~ 167 (275)
T PF00780_consen 156 SKG-FYLIDLNTG 167 (275)
T ss_pred CCc-eEEEecCCC
Confidence 444 777888854
No 377
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.78 E-value=0.75 Score=45.03 Aligned_cols=163 Identities=16% Similarity=0.126 Sum_probs=104.3
Q ss_pred CceeEEEEecCCc------ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC
Q 039302 158 TPILQLRKVAHQG------CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG 231 (479)
Q Consensus 158 ~p~~~~~~~~H~~------~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (479)
...+-+.++.|+. +-|.+-|...+..++|+-| |.+.=|-+.... ...++..-..
T Consensus 5 sGalyhelihhPslfcnipesngvFfDDaNkqlfavrS--ggatgvvvkgpn------------------dDVpiSfdm~ 64 (657)
T KOG2377|consen 5 SGALYHELIHHPSLFCNIPESNGVFFDDANKQLFAVRS--GGATGVVVKGPN------------------DDVPISFDMD 64 (657)
T ss_pred CcceEEEEecCchhhccCCcccceeeccCcceEEEEec--CCeeEEEEeCCC------------------CCCCceeeec
Confidence 3345566777763 3455666655656666643 556667665521 1233333334
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
..++|.++.||++++ .||.--.+..|.+++....+.........+..+..|....|+.+- -+|..+..| +-+|-+.
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVL 140 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEc
Confidence 566999999999998 999999999999999854333221112233345568899998763 466655444 7777766
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLASCLLASGS 344 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs 344 (479)
..+..+...+.|+..|+--.|.++..-.|++.+
T Consensus 141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 655556667888899999999998733333333
No 378
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.72 E-value=2 Score=41.02 Aligned_cols=110 Identities=11% Similarity=0.106 Sum_probs=69.9
Q ss_pred ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC--C---Cc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC-eE
Q 039302 277 IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV--G---KS-ALMSFKAHNADVNVISWNRLASCLLASGSDDG-TF 349 (479)
Q Consensus 277 ~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~--~---~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg-~i 349 (479)
..+-..-+.|+|||+++.++++=+..+.|.-|++.. . .. ....+....+..-.++...++ ++.+++...| .|
T Consensus 159 ~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~lw~~a~~~g~~v 237 (307)
T COG3386 159 DDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NLWVAAVWGGGRV 237 (307)
T ss_pred cCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CEEEecccCCceE
Confidence 333445678999999986666666678898888762 1 11 111222334555667777777 6665444444 89
Q ss_pred EEEeCCCCCCCCceEEEeecCCCCeEEEEEeC-CCCCEEEEEeC
Q 039302 350 SIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSP-HEGSTLAVSSA 392 (479)
Q Consensus 350 ~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp-~~~~~las~s~ 392 (479)
.+|+.. ++ .+..+......+++++|-- ....+++++..
T Consensus 238 ~~~~pd-G~----l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~~ 276 (307)
T COG3386 238 VRFNPD-GK----LLGEIKLPVKRPTNPAFGGPDLNTLYITSAR 276 (307)
T ss_pred EEECCC-Cc----EEEEEECCCCCCccceEeCCCcCEEEEEecC
Confidence 999988 65 6777777667788888853 22344444443
No 379
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.67 E-value=0.16 Score=53.14 Aligned_cols=138 Identities=10% Similarity=0.153 Sum_probs=86.8
Q ss_pred CcceeEEEEecCC-CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC--CCC
Q 039302 169 QGCVNRIRAMSQN-PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN--PVA 245 (479)
Q Consensus 169 ~~~V~~v~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~ 245 (479)
...||.|....-+ ..+|+.|.+||.|.+|.+..-...+.......... ......+|...+.. ...+++|+++ ...
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-~~r~~i~P~f~~~v-~~SaWGLdIh~~~~~ 177 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG-FSRLKIKPFFHLRV-GASAWGLDIHDYKKS 177 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc-cccccCCCCeEeec-CCceeEEEEEecCcc
Confidence 4457777766644 46888899999999998865433322220000000 00023456666653 3489999998 655
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC--Cc---EEEEEeCCCcEEEEEc
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE--SD---VFASCSVDGNIAIWDT 310 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~--~~---~l~s~s~dg~I~iwD~ 310 (479)
. +||++++...|.||-......... ...-..|...|-+|+|-++. .. .+++++-.|.+.+|++
T Consensus 178 r-lIAVSsNs~~VTVFaf~l~~~r~~-~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 178 R-LIAVSSNSQEVTVFAFALVDERFY-HVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred e-EEEEecCCceEEEEEEeccccccc-cccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 5 888888888888887654211110 11112255678899997765 22 6788899999999888
No 380
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.64 E-value=0.049 Score=35.66 Aligned_cols=31 Identities=10% Similarity=0.259 Sum_probs=28.2
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPA 264 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~ 264 (479)
...|.+++|+|..+ +||.|..+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEECC
Confidence 34699999999998 99999999999999984
No 381
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.64 E-value=0.04 Score=36.08 Aligned_cols=31 Identities=19% Similarity=0.568 Sum_probs=27.9
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 371 KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 371 ~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...|..++|+|.. .+||.++.+|.|.+|.++
T Consensus 11 ~~~v~~~~w~P~m-dLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTM-DLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCC-CEEEEEECCCeEEEEECC
Confidence 4579999999976 899999999999999994
No 382
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.56 E-value=1.5 Score=40.47 Aligned_cols=205 Identities=14% Similarity=0.171 Sum_probs=111.7
Q ss_pred cceeEEEEecCCCcEEEEEeCCce-EEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 170 GCVNRIRAMSQNPHICASWADTGH-VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~-V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.....|.++|.-+.-++-+-.-|+ ..+||.+...... ......-..|.+|. .|||++. +
T Consensus 68 aR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv-------------~~~s~~~RHfyGHG------vfs~dG~-~ 127 (366)
T COG3490 68 ARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPV-------------TLVSQEGRHFYGHG------VFSPDGR-L 127 (366)
T ss_pred cccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcE-------------EEecccCceeeccc------ccCCCCc-E
Confidence 445567888887777777777676 4688887621100 00011223455665 5899997 6
Q ss_pred EEEEeC-----CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE--------EcCCCCc
Q 039302 249 LVSGDC-----NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW--------DTRVGKS 315 (479)
Q Consensus 249 l~sg~~-----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw--------D~~~~~~ 315 (479)
|...-+ -|.|-|||.+.+-. . ...+..|.-.-..+.|.++|+ .++.+. |-|... ++.+.+.
T Consensus 128 LYATEndfd~~rGViGvYd~r~~fq-r--vgE~~t~GiGpHev~lm~DGr-tlvvan--GGIethpdfgR~~lNldsMeP 201 (366)
T COG3490 128 LYATENDFDPNRGVIGVYDAREGFQ-R--VGEFSTHGIGPHEVTLMADGR-TLVVAN--GGIETHPDFGRTELNLDSMEP 201 (366)
T ss_pred EEeecCCCCCCCceEEEEecccccc-e--ecccccCCcCcceeEEecCCc-EEEEeC--CceecccccCccccchhhcCc
Confidence 666533 36899999875322 2 255777777788999999999 555442 323332 2222221
Q ss_pred eeeEEe---------------cCCCCEEEEEEcCCCCcEEEEEeCCCeE-----EEEeCCCCCCCCceEEEeec------
Q 039302 316 ALMSFK---------------AHNADVNVISWNRLASCLLASGSDDGTF-----SIHDLRLLKGGDSVVAHFEY------ 369 (479)
Q Consensus 316 ~~~~~~---------------~h~~~v~~l~~~p~~~~~l~sgs~dg~i-----~iwDlr~~~~~~~~~~~~~~------ 369 (479)
.+.-+. -+...|..++..+++ ..++.+-..|.- .+=-.+.++ ++.-+..
T Consensus 202 Slvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~~~d~ppLvg~~~~g~----~l~~~~~pee~~~ 276 (366)
T COG3490 202 SLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGPRNDLPPLVGHFRKGE----PLEFLDLPEEQTA 276 (366)
T ss_pred cEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCCCccCCcceeeccCCC----cCcccCCCHHHHH
Confidence 111111 223345555666555 333332222210 000001111 2222111
Q ss_pred -CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 370 -HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 370 -h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
-...|-+|+.+...+.+.+|+=..+...+||..++.
T Consensus 277 ~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~ 313 (366)
T COG3490 277 AFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA 313 (366)
T ss_pred HHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence 124577888887676666676677888999999884
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.30 E-value=1.6 Score=45.72 Aligned_cols=189 Identities=14% Similarity=0.185 Sum_probs=100.1
Q ss_pred CcEEEEEeCCc------eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCC
Q 039302 182 PHICASWADTG------HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN 255 (479)
Q Consensus 182 ~~~lat~s~dg------~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~d 255 (479)
..+++.|+..+ .|..||..... ...+..+. +.....+++.... . ..++|+.+
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~-------------------w~~~a~m~-~~r~~~~~~~~~~-~-lYv~GG~~ 342 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNE-------------------WSSLAPMP-SPRCRVGVAVLNG-K-LYVVGGYD 342 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCc-------------------EeecCCCC-cccccccEEEECC-E-EEEEcccc
Confidence 36777777764 57777776631 11222222 1122334444432 3 78888888
Q ss_pred -C-----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc-----EEEEEcCCCCc-eeeEEecC
Q 039302 256 -S-----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN-----IAIWDTRVGKS-ALMSFKAH 323 (479)
Q Consensus 256 -g-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~-----I~iwD~~~~~~-~~~~~~~h 323 (479)
| ++..||..+.. |.. ..++.......-...+ .|. +.|+||.||. |-.||.++.+- .+......
T Consensus 343 ~~~~~l~~ve~YD~~~~~-W~~-~a~M~~~R~~~~v~~l--~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~ 417 (571)
T KOG4441|consen 343 SGSDRLSSVERYDPRTNQ-WTP-VAPMNTKRSDFGVAVL--DGK-LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTR 417 (571)
T ss_pred CCCcccceEEEecCCCCc-eec-cCCccCccccceeEEE--CCE-EEEEeccccccccccEEEecCCCCcccccCCCCcc
Confidence 3 57788887743 553 2223222222222222 244 8999998864 77788877631 11111111
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCC------eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc--
Q 039302 324 NADVNVISWNRLASCLLASGSDDG------TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ-- 395 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg------~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~-- 395 (479)
......+.+. +.+.++||.++ ++..||..+.. +..+..+..-........+ ++.+.+.||.|+.
T Consensus 418 r~~~gv~~~~---g~iYi~GG~~~~~~~l~sve~YDP~t~~--W~~~~~M~~~R~~~g~a~~---~~~iYvvGG~~~~~~ 489 (571)
T KOG4441|consen 418 RSGHGVAVLG---GKLYIIGGGDGSSNCLNSVECYDPETNT--WTLIAPMNTRRSGFGVAVL---NGKIYVVGGFDGTSA 489 (571)
T ss_pred eeeeEEEEEC---CEEEEEcCcCCCccccceEEEEcCCCCc--eeecCCcccccccceEEEE---CCEEEEECCccCCCc
Confidence 2223333333 37888888665 46788887765 3233333222222222233 3488888888763
Q ss_pred ---EEEEECCCCC
Q 039302 396 ---LTIWDLSLEK 405 (479)
Q Consensus 396 ---I~iwdl~~~~ 405 (479)
|..||..+..
T Consensus 490 ~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 490 LSSVERYDPETNQ 502 (571)
T ss_pred cceEEEEcCCCCc
Confidence 6677777653
No 384
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.29 E-value=1.4 Score=41.92 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=78.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
...-.+.++.+..++++ .++|+++......-|+-... ...+. -+.....|..|.|.|+
T Consensus 140 ~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~-------------------~w~~~--~r~~~~riq~~gf~~~ 197 (302)
T PF14870_consen 140 VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQT-------------------TWQPH--NRNSSRRIQSMGFSPD 197 (302)
T ss_dssp E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-S-------------------S-EEE--E--SSS-EEEEEE-TT
T ss_pred ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCc-------------------cceEE--ccCccceehhceecCC
Confidence 34555889999999999 67777554444457775431 12222 2234568999999999
Q ss_pred CCCeEEEEeCCCeEEEEe-cCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE---
Q 039302 245 APGRLVSGDCNSCIHLWE-PASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF--- 320 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd-~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~--- 320 (479)
+. +.+ ....|.|++=+ ......|.....+.....-.+.+++|.+.+. ++|+|+ .|++. .....++. -...
T Consensus 198 ~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGkt-W~~~~~~ 271 (302)
T PF14870_consen 198 GN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGKT-WQKDRVG 271 (302)
T ss_dssp S--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-EE-EESSTTSS--EE-GGG
T ss_pred CC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCcc-ceECccc
Confidence 75 444 44788988877 2222333322222322334589999999877 777666 55443 34555542 2222
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIH 352 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iw 352 (479)
..-...++.|.|.+.. .-++. +.+|.|.-|
T Consensus 272 ~~~~~n~~~i~f~~~~-~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 272 ENVPSNLYRIVFVNPD-KGFVL-GQDGVLLRY 301 (302)
T ss_dssp TTSSS---EEEEEETT-EEEEE--STTEEEEE
T ss_pred cCCCCceEEEEEcCCC-ceEEE-CCCcEEEEe
Confidence 1234568888887654 45554 567877655
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.22 E-value=1.1 Score=41.49 Aligned_cols=162 Identities=15% Similarity=0.218 Sum_probs=87.9
Q ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEe-CCCCCCC
Q 039302 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHD-LRLLKGG 360 (479)
Q Consensus 282 ~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD-lr~~~~~ 360 (479)
.+.+.++++++..+.+....++.-.+|-.+.......... ...+..-+|.+++ .+.+....+...+++. ......
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~--g~~l~~PS~d~~g-~~W~v~~~~~~~~~~~~~~~g~~- 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLT--GGSLTRPSWDPDG-WVWTVDDGSGGVRVVRDSASGTG- 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeecc--CCccccccccCCC-CEEEEEcCCCceEEEEecCCCcc-
Confidence 6889999999984434442334444444444332222222 3378888999997 7777666666666663 333331
Q ss_pred CceEEEeecC--CCCeEEEEEeCCCCCEEEEEe---CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 361 DSVVAHFEYH--KHPVTSIEWSPHEGSTLAVSS---ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 361 ~~~~~~~~~h--~~~I~~v~~sp~~~~~las~s---~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
........ ...|+++.++|++ ..+|... .++.|.|=-+...... .......|..+. .
T Consensus 101 --~~~~v~~~~~~~~I~~l~vSpDG-~RvA~v~~~~~~~~v~va~V~r~~~g-------------~~~~l~~~~~~~--~ 162 (253)
T PF10647_consen 101 --EPVEVDWPGLRGRITALRVSPDG-TRVAVVVEDGGGGRVYVAGVVRDGDG-------------VPRRLTGPRRVA--P 162 (253)
T ss_pred --eeEEecccccCCceEEEEECCCC-cEEEEEEecCCCCeEEEEEEEeCCCC-------------CcceeccceEec--c
Confidence 11122221 1289999999977 5444443 3577877766544311 000001111111 1
Q ss_pred cCCCCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 436 QGQKDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 436 ~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
.....+++++|.+... |++.+...+-.+|.
T Consensus 163 ~~~~~v~~v~W~~~~~-L~V~~~~~~~~~~~ 192 (253)
T PF10647_consen 163 PLLSDVTDVAWSDDST-LVVLGRSAGGPVVR 192 (253)
T ss_pred cccCcceeeeecCCCE-EEEEeCCCCCceeE
Confidence 2235799999999986 44444444323333
No 386
>PHA02713 hypothetical protein; Provisional
Probab=95.22 E-value=0.62 Score=48.68 Aligned_cols=145 Identities=10% Similarity=0.057 Sum_probs=76.5
Q ss_pred eEEEEeCCC-----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-------------------
Q 039302 248 RLVSGDCNS-----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG------------------- 303 (479)
Q Consensus 248 ~l~sg~~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg------------------- 303 (479)
..+.|+.++ ++..||+.+ ..|.... ++.........+.. ++. +++.||.++
T Consensus 354 IYviGG~~~~~~~~sve~Ydp~~-~~W~~~~-~mp~~r~~~~~~~~--~g~-IYviGG~~~~~~~~~~~~~~~~~~~~~~ 428 (557)
T PHA02713 354 IYAIGGQNGTNVERTIECYTMGD-DKWKMLP-DMPIALSSYGMCVL--DQY-IYIIGGRTEHIDYTSVHHMNSIDMEEDT 428 (557)
T ss_pred EEEECCcCCCCCCceEEEEECCC-CeEEECC-CCCcccccccEEEE--CCE-EEEEeCCCcccccccccccccccccccc
Confidence 666677654 478899876 3454311 12111111112222 355 777777653
Q ss_pred ----cEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCC------CeEEEEeCCC-CCCCCceEEEeecCC
Q 039302 304 ----NIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLASCLLASGSDD------GTFSIHDLRL-LKGGDSVVAHFEYHK 371 (479)
Q Consensus 304 ----~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d------g~i~iwDlr~-~~~~~~~~~~~~~h~ 371 (479)
.+..||.++.+- .+..+.........+.++ + .+.+.||.+ ..+..||..+ .+ +..+..+....
T Consensus 429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~--~-~IYv~GG~~~~~~~~~~ve~Ydp~~~~~--W~~~~~m~~~r 503 (557)
T PHA02713 429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHK--D-DIYVVCDIKDEKNVKTCIFRYNTNTYNG--WELITTTESRL 503 (557)
T ss_pred cccceEEEECCCCCeEeecCCCCcccccCcEEEEC--C-EEEEEeCCCCCCccceeEEEecCCCCCC--eeEccccCccc
Confidence 467788776531 111111111111222232 3 677777754 2467899887 44 33444554433
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCC--cEEEEECCCCC
Q 039302 372 HPVTSIEWSPHEGSTLAVSSADN--QLTIWDLSLEK 405 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s~Dg--~I~iwdl~~~~ 405 (479)
.....+.+ ++.+.++||.|+ .+-.||..+.+
T Consensus 504 ~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 504 SALHTILH---DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred ccceeEEE---CCEEEEEeeecceeehhhcCccccc
Confidence 33333444 458999999888 66777777654
No 387
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.07 E-value=2 Score=41.05 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=90.7
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCC-CCcccCCCcE-EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDP-NPFIGHAASV-EDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMS 319 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~-~~~~~h~~~V-~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~ 319 (479)
|.++..|.+-+.||++.-..+...++..... ..|.....++ ..-++...+. .++--+..|.|+-.|+..... ....
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~~~~~~~ 222 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDSAKFGKP 222 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSSEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCcccccCc
Confidence 5554478888889999999887655432111 1122222222 2223443343 455577889999888887642 1111
Q ss_pred EecC----------CCCEEEEEEcCCCCcEEEEE--eCCC-------eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 320 FKAH----------NADVNVISWNRLASCLLASG--SDDG-------TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 320 ~~~h----------~~~v~~l~~~p~~~~~l~sg--s~dg-------~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
+..- .+.-.-+++++..+.+++.- +.+| .|.++|+.+.+ .+..+.. ..++.+|+.+
T Consensus 223 ~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k----rv~Ri~l-~~~~~Si~Vs 297 (342)
T PF06433_consen 223 WSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK----RVARIPL-EHPIDSIAVS 297 (342)
T ss_dssp EESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE----EEEEEEE-EEEESEEEEE
T ss_pred ccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe----EEEEEeC-CCccceEEEc
Confidence 1110 12334567777653433321 1122 48888998887 6777764 3468899999
Q ss_pred CCCCCEEEEE-eCCCcEEEEECCCCC
Q 039302 381 PHEGSTLAVS-SADNQLTIWDLSLEK 405 (479)
Q Consensus 381 p~~~~~las~-s~Dg~I~iwdl~~~~ 405 (479)
.++..+|++. ..++.|.+||..+++
T Consensus 298 qd~~P~L~~~~~~~~~l~v~D~~tGk 323 (342)
T PF06433_consen 298 QDDKPLLYALSAGDGTLDVYDAATGK 323 (342)
T ss_dssp SSSS-EEEEEETTTTEEEEEETTT--
T ss_pred cCCCcEEEEEcCCCCeEEEEeCcCCc
Confidence 9776677665 458999999999874
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=95.04 E-value=3.1 Score=43.65 Aligned_cols=154 Identities=11% Similarity=0.076 Sum_probs=81.5
Q ss_pred CceEEEEeCCCCCCeEEEEe------CCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC---
Q 039302 234 DEGYAIDWNPVAPGRLVSGD------CNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD--- 302 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~------~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d--- 302 (479)
..+...+++|++. .++... .|. .|.+++. ++... ....+ .....-.|+|++. .+.+.+..
T Consensus 350 ~~vsspaiSpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~--gg~~~---~lt~g--~~~t~PsWspDG~-~lw~v~dg~~~ 420 (591)
T PRK13616 350 GNITSAALSRSGR-QVAAVVTLGRGAPDPASSLWVGPL--GGVAV---QVLEG--HSLTRPSWSLDAD-AVWVVVDGNTV 420 (591)
T ss_pred cCcccceECCCCC-EEEEEEeecCCCCCcceEEEEEeC--CCcce---eeecC--CCCCCceECCCCC-ceEEEecCcce
Confidence 4677899999998 554443 244 4444454 22211 11222 2367789999977 55555422
Q ss_pred ---------CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEE---EeCCCCCCC-CceEEEeec
Q 039302 303 ---------GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSI---HDLRLLKGG-DSVVAHFEY 369 (479)
Q Consensus 303 ---------g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~i---wDlr~~~~~-~~~~~~~~~ 369 (479)
+.+.+.++..+. ... .....|..+.|+|+| ..||.-. +|.|++ -....+... ..+......
T Consensus 421 ~~v~~~~~~gql~~~~vd~ge-~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 421 VRVIRDPATGQLARTPVDASA-VAS---RVPGPISELQLSRDG-VRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred EEEeccCCCceEEEEeccCch-hhh---ccCCCcCeEEECCCC-CEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 233333443332 111 234579999999999 5444443 477766 332222100 011111222
Q ss_pred CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 370 HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 370 h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
-...+.++.|...+ . |+.+..++...+|.+...
T Consensus 495 l~~~~~~l~W~~~~-~-L~V~~~~~~~~v~~v~vD 527 (591)
T PRK13616 495 LGDTAVSLDWRTGD-S-LVVGRSDPEHPVWYVNLD 527 (591)
T ss_pred cCCccccceEecCC-E-EEEEecCCCCceEEEecC
Confidence 33446889999854 4 446555555556666554
No 389
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=95.02 E-value=3.1 Score=38.95 Aligned_cols=145 Identities=12% Similarity=0.085 Sum_probs=86.3
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
..|+.|+++| |+++++.. ...+.... +...|..|...+.-+ .|++-+ |+.+++++
T Consensus 8 ~~L~vGt~~G-l~~~~~~~--------------------~~~~~~i~--~~~~I~ql~vl~~~~-~llvLs-d~~l~~~~ 62 (275)
T PF00780_consen 8 DRLLVGTEDG-LYVYDLSD--------------------PSKPTRIL--KLSSITQLSVLPELN-LLLVLS-DGQLYVYD 62 (275)
T ss_pred CEEEEEECCC-EEEEEecC--------------------CccceeEe--ecceEEEEEEecccC-EEEEEc-CCccEEEE
Confidence 5666778888 99999933 12222222 223499999998876 665555 59999999
Q ss_pred cCCCCccccCC----------CCcccCCCcEEEEE--ECCCCCcEEEEEeCCCcEEEEEcCCCC----ceeeEEecCCCC
Q 039302 263 PASDATWNVDP----------NPFIGHAASVEDLQ--WSPTESDVFASCSVDGNIAIWDTRVGK----SALMSFKAHNAD 326 (479)
Q Consensus 263 ~~~~~~~~~~~----------~~~~~h~~~V~~l~--~sp~~~~~l~s~s~dg~I~iwD~~~~~----~~~~~~~~h~~~ 326 (479)
+..-....... .........+...+ -...+. ..+.+...++|.+|...... .....+ .-...
T Consensus 63 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~~ 140 (275)
T PF00780_consen 63 LDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPDP 140 (275)
T ss_pred chhhccccccccccccccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEE-EcCCC
Confidence 86643321100 00112233444444 122333 44445556699999887642 122333 34577
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
+.+++|.+ ..|+.|..+ ...+.|+.++.
T Consensus 141 ~~~i~~~~---~~i~v~~~~-~f~~idl~~~~ 168 (275)
T PF00780_consen 141 PSSIAFLG---NKICVGTSK-GFYLIDLNTGS 168 (275)
T ss_pred cEEEEEeC---CEEEEEeCC-ceEEEecCCCC
Confidence 89999994 567777654 47889999765
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.73 E-value=6.5 Score=41.24 Aligned_cols=144 Identities=15% Similarity=0.251 Sum_probs=77.3
Q ss_pred eEEEEeCCC-----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC------cEEEEEcCCCCc-
Q 039302 248 RLVSGDCNS-----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG------NIAIWDTRVGKS- 315 (479)
Q Consensus 248 ~l~sg~~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg------~I~iwD~~~~~~- 315 (479)
+.|+|+.|| +|-.||..+ ..|.... +.......+-.+.+ .+. +.++||.++ ++..||..+..-
T Consensus 383 iYavGG~dg~~~l~svE~YDp~~-~~W~~va-~m~~~r~~~gv~~~--~g~-iYi~GG~~~~~~~l~sve~YDP~t~~W~ 457 (571)
T KOG4441|consen 383 LYAVGGFDGEKSLNSVECYDPVT-NKWTPVA-PMLTRRSGHGVAVL--GGK-LYIIGGGDGSSNCLNSVECYDPETNTWT 457 (571)
T ss_pred EEEEeccccccccccEEEecCCC-CcccccC-CCCcceeeeEEEEE--CCE-EEEEcCcCCCccccceEEEEcCCCCcee
Confidence 777888886 467788866 4444321 12111222222333 244 888888554 467888877631
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe-----EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGSDDGT-----FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~-----i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
.+..+..-........++ + .+.+.||.|+. |..||.++.+ +..+..+......+..+.+ ++.+.++|
T Consensus 458 ~~~~M~~~R~~~g~a~~~--~-~iYvvGG~~~~~~~~~VE~ydp~~~~--W~~v~~m~~~rs~~g~~~~---~~~ly~vG 529 (571)
T KOG4441|consen 458 LIAPMNTRRSGFGVAVLN--G-KIYVVGGFDGTSALSSVERYDPETNQ--WTMVAPMTSPRSAVGVVVL---GGKLYAVG 529 (571)
T ss_pred ecCCcccccccceEEEEC--C-EEEEECCccCCCccceEEEEcCCCCc--eeEcccCccccccccEEEE---CCEEEEEe
Confidence 111111111112223333 3 78899998873 7789988776 3333333333333333333 45888888
Q ss_pred eCCCc-----EEEEECCCC
Q 039302 391 SADNQ-----LTIWDLSLE 404 (479)
Q Consensus 391 s~Dg~-----I~iwdl~~~ 404 (479)
+.||. |-.||..+.
T Consensus 530 G~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 530 GFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccCccccceeEEcCCCCC
Confidence 87763 555655544
No 391
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.61 E-value=1.1 Score=46.77 Aligned_cols=115 Identities=17% Similarity=0.215 Sum_probs=67.8
Q ss_pred EEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEc--CCCCcEEEEEeCCCeEEEEeC-----CCC
Q 039302 285 DLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWN--RLASCLLASGSDDGTFSIHDL-----RLL 357 (479)
Q Consensus 285 ~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~--p~~~~~l~sgs~dg~i~iwDl-----r~~ 357 (479)
-+.-+..++ ..++-+....+.|||.+.+.-...........|..+.|. |++ +.+++.|..+.|.+|-- .+.
T Consensus 34 li~gss~~k-~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~~~ 111 (631)
T PF12234_consen 34 LISGSSIKK-IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYTNK 111 (631)
T ss_pred eEeecccCc-EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhhcC
Confidence 333444444 333344456799999998741111112346789999995 677 55555566778887753 222
Q ss_pred CCCCceEEEe--ecCC-CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 358 KGGDSVVAHF--EYHK-HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 358 ~~~~~~~~~~--~~h~-~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.+...++..+ ..|+ .+|.+..|-+++ .++ +|+ ++++.|+|-...
T Consensus 112 ~p~w~~i~~i~i~~~T~h~Igds~Wl~~G-~Lv-V~s-GNqlfv~dk~~~ 158 (631)
T PF12234_consen 112 GPSWAPIRKIDISSHTPHPIGDSIWLKDG-TLV-VGS-GNQLFVFDKWLD 158 (631)
T ss_pred CcccceeEEEEeecCCCCCccceeEecCC-eEE-EEe-CCEEEEECCCcC
Confidence 2223345444 3344 689999999854 444 333 567888875444
No 392
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.53 E-value=2.3 Score=37.75 Aligned_cols=154 Identities=16% Similarity=0.184 Sum_probs=88.3
Q ss_pred EEEEEeCCCcEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCC------CeEEEE-eCCCCCCCCceEE-
Q 039302 295 VFASCSVDGNIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLASCLLASGSDD------GTFSIH-DLRLLKGGDSVVA- 365 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d------g~i~iw-Dlr~~~~~~~~~~- 365 (479)
+|++ .....|.+|++..... ++..+. .-+.|..+.++..| .+|+|==.+ ..+++| +.|.......++.
T Consensus 31 Lfva-~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 31 LFVA-ASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred EEEE-cCCCEEEEEEcccCCCceeEEEc-chhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 4444 5567899999994433 444444 34789999999999 788874322 145654 2222211111222
Q ss_pred EeecC---------------------CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCC
Q 039302 366 HFEYH---------------------KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAP 424 (479)
Q Consensus 366 ~~~~h---------------------~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 424 (479)
.+-|| ..++.+++..|..|++++.+ ++.+.+|.+.......+ ....
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~~~~-----------~~~~ 174 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTIQSE-----------KFSF 174 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEEecc-----------cccE
Confidence 22221 34678899999776666543 67899999876532100 0000
Q ss_pred CCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 425 EDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 425 ~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
.+.-..++..|. .-.+..+++.. ..+|..++..+.++++.
T Consensus 175 lDFe~~l~~~~~-~~~p~~v~ic~---~yiA~~s~~ev~Vlkl~ 214 (215)
T PF14761_consen 175 LDFERSLIDHID-NFKPTQVAICE---GYIAVMSDLEVLVLKLE 214 (215)
T ss_pred Eechhhhhheec-CceEEEEEEEe---eEEEEecCCEEEEEEEe
Confidence 011112223332 23477888876 47888888878888864
No 393
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.46 E-value=0.15 Score=32.43 Aligned_cols=33 Identities=30% Similarity=0.450 Sum_probs=28.0
Q ss_pred CcEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCC
Q 039302 281 ASVEDLQWSPTES--DVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 281 ~~V~~l~~sp~~~--~~l~s~s~dg~I~iwD~~~~ 313 (479)
++|.++.|+|... .+|+.+-.-|.|.|+|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998654 68998888999999999953
No 394
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=94.14 E-value=3.4 Score=43.65 Aligned_cols=119 Identities=9% Similarity=0.026 Sum_probs=75.0
Q ss_pred ceEEEEeCCCCC-CeEEEEeCCCeEEEEecCCC------C-------c--cccCCCCcccCCCcEEEEEEC--CCCCcEE
Q 039302 235 EGYAIDWNPVAP-GRLVSGDCNSCIHLWEPASD------A-------T--WNVDPNPFIGHAASVEDLQWS--PTESDVF 296 (479)
Q Consensus 235 ~v~~l~~s~~~~-~~l~sg~~dg~I~lwd~~~~------~-------~--~~~~~~~~~~h~~~V~~l~~s--p~~~~~l 296 (479)
.|+.|....-+. ..|+.|..||.|.+|.+.+- . . ..+.......-..+++.++++ ...+ ++
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~r-lI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSR-LI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcce-EE
Confidence 355555444332 28999999999999976320 0 0 000011112234588999998 6666 88
Q ss_pred EEEeCCCcEEEEEcCCC--CceeeEEecCCCCEEEEEEcCCC--Cc---EEEEEeCCCeEEEEeC
Q 039302 297 ASCSVDGNIAIWDTRVG--KSALMSFKAHNADVNVISWNRLA--SC---LLASGSDDGTFSIHDL 354 (479)
Q Consensus 297 ~s~s~dg~I~iwD~~~~--~~~~~~~~~h~~~v~~l~~~p~~--~~---~l~sgs~dg~i~iwDl 354 (479)
|+++....|.||-+... +.....-..|...|-+|+|-++. +. .+++++-.|.+.+|++
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 88888888888866542 11111122366678999997654 22 7888899999999887
No 395
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.03 E-value=0.07 Score=56.01 Aligned_cols=207 Identities=18% Similarity=0.261 Sum_probs=112.7
Q ss_pred EecCCcceeEEEEecCC-CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeC
Q 039302 165 KVAHQGCVNRIRAMSQN-PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWN 242 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~-~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s 242 (479)
..+.+|.|-.++|-..+ +++. -.-|.+.||++..-...+ ..+.+.+ ...-...+.-+.|+
T Consensus 128 ~kgf~G~v~dl~fah~~~pk~~---~~vg~lfVy~vd~l~G~i---------------q~~l~v~~~~p~gs~~~~V~wc 189 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAHTKCPKGR---RLVGELFVYDVDVLQGEI---------------QPQLEVTPITPYGSDPQLVSWC 189 (1283)
T ss_pred HhcCCCCcccccccccCChHHH---HHhhhhheeehHhhcccc---------------ccceEEeecCcCCCCcceeeec
Confidence 34667888888885533 2222 233778999987621111 0111111 11122344566777
Q ss_pred CCCCC--eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEE-----------ECCCCCcEEEEEeCCCcEEEEE
Q 039302 243 PVAPG--RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ-----------WSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 243 ~~~~~--~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~-----------~sp~~~~~l~s~s~dg~I~iwD 309 (479)
|--.+ ++..+..++.|++.++++... ..+.+|...+.+++ .+|+|. +|+.++.||.++.|-
T Consensus 190 p~~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Q 263 (1283)
T KOG1916|consen 190 PIAVNKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQ 263 (1283)
T ss_pred ccccccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceee
Confidence 64332 777888889999888765332 22445665555544 589998 999999999988887
Q ss_pred cCCCC----ceeeEEecCCC-CEEEEEEcCCC--------CcEEEEEeC-CCeEEEEeCCCCCCCCceEEEeecCCCCeE
Q 039302 310 TRVGK----SALMSFKAHNA-DVNVISWNRLA--------SCLLASGSD-DGTFSIHDLRLLKGGDSVVAHFEYHKHPVT 375 (479)
Q Consensus 310 ~~~~~----~~~~~~~~h~~-~v~~l~~~p~~--------~~~l~sgs~-dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~ 375 (479)
+.-.. .++...+.|.. +-.|.-++.+. -.+++++++ +..+++|.-...++ + +......|.
T Consensus 264 iyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~C----l--l~~~~d~v~ 337 (1283)
T KOG1916|consen 264 IYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQC----L--LDKLIDGVQ 337 (1283)
T ss_pred eeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhh----h--hhhcccceE
Confidence 64321 14444555652 22221122211 024455554 44689998776663 3 121223333
Q ss_pred EEEEeCCCC------------CEEEEEeCCCcEEEEECCC
Q 039302 376 SIEWSPHEG------------STLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 376 ~v~~sp~~~------------~~las~s~Dg~I~iwdl~~ 403 (479)
.|. |.++ ..+++.+-++.|.+|.=+.
T Consensus 338 iV~--p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 338 IVG--PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred eec--CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 333 3221 1234456678888886544
No 396
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=93.97 E-value=7.4 Score=38.83 Aligned_cols=155 Identities=10% Similarity=0.142 Sum_probs=90.1
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC---CC-CCcEEEEEeCCCcEEEEEcCCCC----
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS---PT-ESDVFASCSVDGNIAIWDTRVGK---- 314 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s---p~-~~~~l~s~s~dg~I~iwD~~~~~---- 314 (479)
+++...|++|+..|.++||++...+.......--..-..+|..|..- +. +.+.||+ =.-+.+.||.+....
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence 44445999999999999999955432111011011224577777653 22 2223433 446778888874321
Q ss_pred ----ceeeEEecCC--CCEEEEEEcCCC----CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 315 ----SALMSFKAHN--ADVNVISWNRLA----SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 315 ----~~~~~~~~h~--~~v~~l~~~p~~----~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
..+.....|. .....+++-|.| ..+|.+-+.||.+.+|+-.... ....+.. ---...+.+.|..
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~----f~~~lp~-~llPgPl~Y~~~t- 186 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA----FSRFLPD-FLLPGPLCYCPRT- 186 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE----EEEEcCC-CCCCcCeEEeecC-
Confidence 0122222232 233444444433 3689999999999999987644 2222322 1112346777754
Q ss_pred CEEEEEeCCCcEEEEECCCC
Q 039302 385 STLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl~~~ 404 (479)
..|++++.+..|..|.....
T Consensus 187 Dsfvt~sss~~l~~Yky~~L 206 (418)
T PF14727_consen 187 DSFVTASSSWTLECYKYQDL 206 (418)
T ss_pred CEEEEecCceeEEEecHHHh
Confidence 78889988999999887543
No 397
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.92 E-value=7.3 Score=38.60 Aligned_cols=203 Identities=11% Similarity=0.002 Sum_probs=87.4
Q ss_pred CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC---CC----CceEEEEeCCCCCCeEEEE--
Q 039302 182 PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG---HK----DEGYAIDWNPVAPGRLVSG-- 252 (479)
Q Consensus 182 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~----~~v~~l~~s~~~~~~l~sg-- 252 (479)
..|++-|-.++.|+|+|+.+....... ..++.. +. ..-..+..-|++. .++|+
T Consensus 88 r~Li~PgL~SsrIyviD~~~dPr~P~l-----------------~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lG 149 (461)
T PF05694_consen 88 RYLILPGLRSSRIYVIDTKTDPRKPRL-----------------HKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALG 149 (461)
T ss_dssp -EEEEEBTTT--EEEEE--S-TTS-EE-----------------EEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEE
T ss_pred CcEEeeeeccCcEEEEECCCCCCCCce-----------------EeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEecc
Confidence 466777668999999999875433321 111110 00 1112233345554 66664
Q ss_pred eC----CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC--------------------CCcEEEE
Q 039302 253 DC----NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV--------------------DGNIAIW 308 (479)
Q Consensus 253 ~~----dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--------------------dg~I~iw 308 (479)
+. -|.+.+.|-.+......- ..-.+....-.++-|.|..+ +++|... -.++.+|
T Consensus 150 d~~G~g~Ggf~llD~~tf~v~g~W-e~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vW 227 (461)
T PF05694_consen 150 DADGNGPGGFVLLDGETFEVKGRW-EKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVW 227 (461)
T ss_dssp ETTS-S--EEEEE-TTT--EEEE---SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEE
T ss_pred CCCCCCCCcEEEEcCcccccccee-ccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEE
Confidence 22 235666665542221100 00011123456788888776 7777632 4579999
Q ss_pred EcCCCCceeeEEecCCC--CEEEEEE--cCCCCcEEEEEeCCCeEEEEeC-CCCCCCCceEEEeec--------------
Q 039302 309 DTRVGKSALMSFKAHNA--DVNVISW--NRLASCLLASGSDDGTFSIHDL-RLLKGGDSVVAHFEY-------------- 369 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~--~v~~l~~--~p~~~~~l~sgs~dg~i~iwDl-r~~~~~~~~~~~~~~-------------- 369 (479)
|+.+.+ .++++.-... ...-|.| +|....=++.+.-.++|..|-. ..+.-....+..+..
T Consensus 228 D~~~r~-~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~ 306 (461)
T PF05694_consen 228 DWSTRK-LLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKP 306 (461)
T ss_dssp ETTTTE-EEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGG
T ss_pred ECCCCc-EeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccc
Confidence 999875 6666654332 2344555 4555344555555556655543 322210112222221
Q ss_pred ---CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 370 ---HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 370 ---h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
-..-|+.|..|.++..+.+++=.+|.|+.||++...
T Consensus 307 ~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 307 FGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp G-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred cccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 124479999999884444555569999999998764
No 398
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.72 E-value=1.9 Score=43.04 Aligned_cols=142 Identities=12% Similarity=0.081 Sum_probs=80.6
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-------cEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-------DVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-------~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
++..|..-..++--|+..+... ..+.-|.. | -++|.|... ..|+ |-.+..|.-.|.|.....+...
T Consensus 482 i~~dg~~~~kLykmDIErGkvv----eeW~~~dd-v-vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v~ 554 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVV----EEWDLKDD-V-VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKVV 554 (776)
T ss_pred EEecCCCcccceeeecccceee----eEeecCCc-c-eeecCCchhHHhcCccceEE-eecccceEEecccccCCceeee
Confidence 3444555556666666654331 22223332 2 466666532 1343 4445556666877654222221
Q ss_pred e----cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 321 K----AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 321 ~----~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
. ......++..-... .++|+||..|-|++||.-... .-..+.+-...|-.|..+.++..+|||| ...+
T Consensus 555 esKdY~tKn~Fss~~tTes--GyIa~as~kGDirLyDRig~r----AKtalP~lG~aIk~idvta~Gk~ilaTC--k~yl 626 (776)
T COG5167 555 ESKDYKTKNKFSSGMTTES--GYIAAASRKGDIRLYDRIGKR----AKTALPGLGDAIKHIDVTANGKHILATC--KNYL 626 (776)
T ss_pred eehhccccccccccccccC--ceEEEecCCCceeeehhhcch----hhhcCcccccceeeeEeecCCcEEEEee--cceE
Confidence 1 11223333333333 489999999999999965443 3445667788899999998774455554 4567
Q ss_pred EEEECCCC
Q 039302 397 TIWDLSLE 404 (479)
Q Consensus 397 ~iwdl~~~ 404 (479)
.+-|++..
T Consensus 627 lL~d~~ik 634 (776)
T COG5167 627 LLTDVPIK 634 (776)
T ss_pred EEEecccc
Confidence 78887653
No 399
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.63 E-value=0.93 Score=45.20 Aligned_cols=79 Identities=14% Similarity=0.182 Sum_probs=51.2
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC-----CCceEEEee-----------cCCCCeEEEEEeCCC--CCEE
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG-----GDSVVAHFE-----------YHKHPVTSIEWSPHE--GSTL 387 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~-----~~~~~~~~~-----------~h~~~I~~v~~sp~~--~~~l 387 (479)
.|..+..++.| ..++-.|.+|.+.++=.+.... .+.++...+ ...-.+..++|+|+. ...|
T Consensus 105 eV~~vl~s~~G-S~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 105 EVYQVLLSPTG-SHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEecCCC-ceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 46778889999 6677777788766654332221 011111111 112245678999976 6788
Q ss_pred EEEeCCCcEEEEECCCCC
Q 039302 388 AVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~ 405 (479)
..-+.|+.|++||++...
T Consensus 184 ~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 184 VLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEecCcEEEEEecCCcc
Confidence 888999999999998764
No 400
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.59 E-value=1.6 Score=46.79 Aligned_cols=80 Identities=25% Similarity=0.350 Sum_probs=52.7
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC-C-----CCc--eEEEe--------ecCCCCeEEEEEeCCC--CCE
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK-G-----GDS--VVAHF--------EYHKHPVTSIEWSPHE--GST 386 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~-~-----~~~--~~~~~--------~~h~~~I~~v~~sp~~--~~~ 386 (479)
-.|..|.+||.| .+||..|..|.+.+.=.+... . ... ..+++ ..+...|..+.|+|.+ +..
T Consensus 85 f~v~~i~~n~~g-~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTG-SLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCC-CEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 468899999999 777777776644333222211 0 000 11111 1245678999999964 578
Q ss_pred EEEEeCCCcEEEEECCCCC
Q 039302 387 LAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~ 405 (479)
|+.-..|+++++||+....
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 9999999999999998654
No 401
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=93.47 E-value=0.76 Score=45.19 Aligned_cols=107 Identities=16% Similarity=0.249 Sum_probs=55.9
Q ss_pred CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC--ceEEEEeCCC--CCCeEEEEeCCCeEEEEecCCC
Q 039302 191 TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD--EGYAIDWNPV--APGRLVSGDCNSCIHLWEPASD 266 (479)
Q Consensus 191 dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~s~~--~~~~l~sg~~dg~I~lwd~~~~ 266 (479)
..++++||+.. .++++++.--.. ....+.|..+ ...-++.+....+|..|--...
T Consensus 221 G~~l~vWD~~~---------------------r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~ 279 (461)
T PF05694_consen 221 GHSLHVWDWST---------------------RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD 279 (461)
T ss_dssp --EEEEEETTT---------------------TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET
T ss_pred cCeEEEEECCC---------------------CcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC
Confidence 46799999998 566666654322 3455666544 3323555555667766655343
Q ss_pred CccccCC------------------CCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 267 ATWNVDP------------------NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 267 ~~~~~~~------------------~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+.|.... +.+..-..-|++|..|.+++.+.+++-..|.|+.||+.....+..
T Consensus 280 g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl 349 (461)
T PF05694_consen 280 GEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKL 349 (461)
T ss_dssp TEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EE
T ss_pred CCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcE
Confidence 4432210 111112356899999999998888888999999999998765443
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.46 E-value=0.3 Score=31.08 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=27.1
Q ss_pred CEEEEEEcCCCC--cEEEEEeCCCeEEEEeCCC
Q 039302 326 DVNVISWNRLAS--CLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 326 ~v~~l~~~p~~~--~~l~sgs~dg~i~iwDlr~ 356 (479)
.|.++.|+|... .+|+..-.-|.|.|+|+|+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 588999998774 6899988999999999995
No 403
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.40 E-value=3.8 Score=42.91 Aligned_cols=123 Identities=11% Similarity=0.189 Sum_probs=70.2
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCC-CCCEEEEEeCCCcEEEEECCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPH-EGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~-~~~~las~s~Dg~I~iwdl~~ 403 (479)
...-+.-+..+ ..-++.+....+.|||.+... ....-. ...+.|.++.|... ++..+.+.|-.+.|.+|--..
T Consensus 31 ~~~li~gss~~-k~a~V~~~~~~LtIWD~~~~~----lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R 105 (631)
T PF12234_consen 31 NPSLISGSSIK-KIAVVDSSRSELTIWDTRSGV----LEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLR 105 (631)
T ss_pred CcceEeecccC-cEEEEECCCCEEEEEEcCCcE----EEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccc
Confidence 33444444434 444444445589999998776 222221 35789999999542 346777778888998886533
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
..- ....+.-.+...+-..... .+|.+..|.++| .++.++++.+.|+.-+
T Consensus 106 ~dy-------------~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G--~LvV~sGNqlfv~dk~ 156 (631)
T PF12234_consen 106 YDY-------------TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG--TLVVGSGNQLFVFDKW 156 (631)
T ss_pred hhh-------------hcCCcccceeEEEEeecCCCCCccceeEecCC--eEEEEeCCEEEEECCC
Confidence 210 0111112233333232222 269999999997 4555555656776543
No 404
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.21 E-value=7.2 Score=36.35 Aligned_cols=167 Identities=13% Similarity=0.150 Sum_probs=103.8
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-CCceEEEEeCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-KDEGYAIDWNPVA 245 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s~~~ 245 (479)
+-...|.++.|+|+...++++....-. |-.+.. .++.+.++.-. -..--++.|...+
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~--iVElt~--------------------~GdlirtiPL~g~~DpE~Ieyig~n 140 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAA--IVELTK--------------------EGDLIRTIPLTGFSDPETIEYIGGN 140 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCce--EEEEec--------------------CCceEEEecccccCChhHeEEecCC
Confidence 455669999999999888877544332 333333 24444443221 1133467777666
Q ss_pred CCeEEEEeCCCeEEEEecCCCCcc------ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee-
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATW------NVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM- 318 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~------~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~- 318 (479)
. +.++--.++.+.++.+...... .+........+.....++|.|.+. .|..+-+-.-+.||.+......+.
T Consensus 141 ~-fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 141 Q-FVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSV 218 (316)
T ss_pred E-EEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCccccc
Confidence 5 5555566788888877654321 111122222266788999999988 677777777888887765431111
Q ss_pred -EEecC-------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 319 -SFKAH-------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 319 -~~~~h-------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
....+ -..|.++.|++..+++|+-+..++.+.-.|+.-.
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 11111 2357888999887788888888888888887643
No 405
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.09 E-value=9 Score=37.12 Aligned_cols=253 Identities=15% Similarity=0.122 Sum_probs=114.8
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc-ccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC--CCC
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHL-NALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV--APG 247 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~--~~~ 247 (479)
.-+.|+|.|++ .++++ ...|.|++++..... .... ... ............++++|+ .++
T Consensus 3 ~P~~~a~~pdG-~l~v~-e~~G~i~~~~~~g~~~~~v~--------------~~~--~v~~~~~~gllgia~~p~f~~n~ 64 (331)
T PF07995_consen 3 NPRSMAFLPDG-RLLVA-ERSGRIWVVDKDGSLKTPVA--------------DLP--EVFADGERGLLGIAFHPDFASNG 64 (331)
T ss_dssp SEEEEEEETTS-CEEEE-ETTTEEEEEETTTEECEEEE--------------E-T--TTBTSTTBSEEEEEE-TTCCCC-
T ss_pred CceEEEEeCCC-cEEEE-eCCceEEEEeCCCcCcceec--------------ccc--cccccccCCcccceeccccCCCC
Confidence 35789999998 67766 669999999933311 0000 000 012233447789999995 112
Q ss_pred eEEEEeC-C--------CeEEEEecCCCCc----cccCCC--Cc-ccCCCcEEEEEECCCCCcEEEEEeCCCc-------
Q 039302 248 RLVSGDC-N--------SCIHLWEPASDAT----WNVDPN--PF-IGHAASVEDLQWSPTESDVFASCSVDGN------- 304 (479)
Q Consensus 248 ~l~sg~~-d--------g~I~lwd~~~~~~----~~~~~~--~~-~~h~~~V~~l~~sp~~~~~l~s~s~dg~------- 304 (479)
+|..... . ..|.-|....... ...... .. ......-..|.|.|++. ++++.+..+.
T Consensus 65 ~lYv~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~-LYvs~G~~~~~~~~~~~ 143 (331)
T PF07995_consen 65 YLYVYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK-LYVSVGDGGNDDNAQDP 143 (331)
T ss_dssp EEEEEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE-EEEEEB-TTTGGGGCST
T ss_pred EEEEEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc-EEEEeCCCCCccccccc
Confidence 3333332 1 2344444433211 000000 01 11223456699999997 6666554332
Q ss_pred ------EEEEEcCCCC---c--------eeeEE-ecCCCCEEEEEEcCCCCcEEEE-EeCCCeEEEEeCCCCCC------
Q 039302 305 ------IAIWDTRVGK---S--------ALMSF-KAHNADVNVISWNRLASCLLAS-GSDDGTFSIHDLRLLKG------ 359 (479)
Q Consensus 305 ------I~iwD~~~~~---~--------~~~~~-~~h~~~v~~l~~~p~~~~~l~s-gs~dg~i~iwDlr~~~~------ 359 (479)
|.-.+....- . ....+ .++. ....++|+|..+.++++ -+.++.=.|--++.+..
T Consensus 144 ~~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~ 222 (331)
T PF07995_consen 144 NSLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYC 222 (331)
T ss_dssp TSSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTB
T ss_pred ccccceEEEecccCcCCCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCC
Confidence 2222322110 0 00111 2222 24678999983255543 23333222222222110
Q ss_pred -------------------CCceEEEeecCCCCeEEEEEeCC------CCCEEEEEeCCCcEEEEECCCCCChHHHHHHh
Q 039302 360 -------------------GDSVVAHFEYHKHPVTSIEWSPH------EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFK 414 (479)
Q Consensus 360 -------------------~~~~~~~~~~h~~~I~~v~~sp~------~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~ 414 (479)
...|+..+..| ..++.+.|... .+.+|++.-..+.|....+......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~------- 294 (331)
T PF07995_consen 223 EGGPKYSGPPIGDAPSCPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSV------- 294 (331)
T ss_dssp SSSCSTTSS-ECTGSS-TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEE-------
T ss_pred cCCCCCCCCccccccCCCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCc-------
Confidence 01255556554 56677777642 2245666555667777777543210
Q ss_pred hhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 415 AKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 415 ~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
..+..+.......+.+|++.|++. |.++...+| .|||
T Consensus 295 -------------~~~~~~~~~~~~r~~~v~~~pDG~-Lyv~~d~~G-~iyR 331 (331)
T PF07995_consen 295 -------------TEEEEFLGGFGGRPRDVAQGPDGA-LYVSDDSDG-KIYR 331 (331)
T ss_dssp -------------EEEEEECTTSSS-EEEEEEETTSE-EEEEE-TTT-TEEE
T ss_pred -------------cceEEccccCCCCceEEEEcCCCe-EEEEECCCC-eEeC
Confidence 001112222222699999999996 555555554 5554
No 406
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.03 E-value=0.045 Score=57.39 Aligned_cols=174 Identities=12% Similarity=0.095 Sum_probs=94.9
Q ss_pred CceeEEEE-ecCCcceeEEEEecCC--CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC
Q 039302 158 TPILQLRK-VAHQGCVNRIRAMSQN--PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD 234 (479)
Q Consensus 158 ~p~~~~~~-~~H~~~V~~v~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 234 (479)
.|.+.+.. .+-...+..|.|+|-- .-.+..+-.+|.|++..++.... ..+.+|+.
T Consensus 168 q~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~----------------------~l~rsHs~ 225 (1283)
T KOG1916|consen 168 QPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR----------------------SLFRSHSQ 225 (1283)
T ss_pred ccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH----------------------HHHHhcCC
Confidence 34444333 2334556778888743 35677778889999988877432 22334554
Q ss_pred ceEEEE-----------eCCCCCCeEEEEeCCCeEEEEecCCCCc-cccCCCCcccCC-CcEEEEEECCCCC--------
Q 039302 235 EGYAID-----------WNPVAPGRLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHA-ASVEDLQWSPTES-------- 293 (479)
Q Consensus 235 ~v~~l~-----------~s~~~~~~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~-~~V~~l~~sp~~~-------- 293 (479)
.+..++ .+|+|. .|+.+..||.+++|.+.-.+. ........+.|. .+-.|.-|+.+..
T Consensus 226 ~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w 304 (1283)
T KOG1916|consen 226 RVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKW 304 (1283)
T ss_pred CcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCcccee
Confidence 444433 588887 888888899988888754332 111123344555 2322322443321
Q ss_pred cEEEEEe-CCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCC-----------cEEEEEeCCCeEEEEeCCCCC
Q 039302 294 DVFASCS-VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLAS-----------CLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 294 ~~l~s~s-~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~-----------~~l~sgs~dg~i~iwDlr~~~ 358 (479)
.++++++ .+..+++|.....+ |+. ...-..|+.+. -+++. ..+++-+-++.|++|--+.-.
T Consensus 305 ~~~Itttd~nre~k~w~~a~w~-Cll--~~~~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~a~ 377 (1283)
T KOG1916|consen 305 VLRITTTDVNREEKFWAEAPWQ-CLL--DKLIDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRKAQ 377 (1283)
T ss_pred EEEEecccCCcceeEeeccchh-hhh--hhcccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcchhh
Confidence 0233333 45668888776554 331 11223344444 22221 124556778889998766543
No 407
>PRK13684 Ycf48-like protein; Provisional
Probab=93.02 E-value=8.7 Score=37.28 Aligned_cols=155 Identities=13% Similarity=0.162 Sum_probs=84.5
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEE-EeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQV-WDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
.+.++.+.+.|++ .++++ +..|.+.. ++-.. . ....+ ...-...++++.+.+++.
T Consensus 172 ~g~~~~i~~~~~g-~~v~~-g~~G~i~~s~~~gg--~-----------------tW~~~--~~~~~~~l~~i~~~~~g~- 227 (334)
T PRK13684 172 AGVVRNLRRSPDG-KYVAV-SSRGNFYSTWEPGQ--T-----------------AWTPH--QRNSSRRLQSMGFQPDGN- 227 (334)
T ss_pred cceEEEEEECCCC-eEEEE-eCCceEEEEcCCCC--C-----------------eEEEe--eCCCcccceeeeEcCCCC-
Confidence 4678899999987 56666 45565543 22111 0 01111 112335789999999876
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE---ecCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF---KAHN 324 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~---~~h~ 324 (479)
.++.| ..|.+++=....+..|.....+.......+.++.+.|++. ++ .++.+|.|.. ....++ .-... ..-.
T Consensus 228 ~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~~-~~G~~G~v~~-S~d~G~-tW~~~~~~~~~~ 302 (334)
T PRK13684 228 LWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-IW-AGGGNGTLLV-SKDGGK-TWEKDPVGEEVP 302 (334)
T ss_pred EEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-EE-EEcCCCeEEE-eCCCCC-CCeECCcCCCCC
Confidence 55554 4677654333444445422222111234578899999776 44 4555776553 333332 11111 1222
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
...+.+.|...+ ..++ .+..|.|..|+-
T Consensus 303 ~~~~~~~~~~~~-~~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 303 SNFYKIVFLDPE-KGFV-LGQRGVLLRYVG 330 (334)
T ss_pred cceEEEEEeCCC-ceEE-ECCCceEEEecC
Confidence 357778877665 5555 456788877653
No 408
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.49 E-value=8.9 Score=35.58 Aligned_cols=189 Identities=16% Similarity=0.167 Sum_probs=105.4
Q ss_pred EEecCCCcEEEEEe----CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE
Q 039302 176 RAMSQNPHICASWA----DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 176 ~~~p~~~~~lat~s----~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s 251 (479)
.|+|+|..+.||=. .-|.|-|||... ..+.+-.+..|.-.-..|.|.+++. .|+.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~--------------------~fqrvgE~~t~GiGpHev~lm~DGr-tlvv 178 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDARE--------------------GFQRVGEFSTHGIGPHEVTLMADGR-TLVV 178 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccc--------------------ccceecccccCCcCcceeEEecCCc-EEEE
Confidence 68999966666532 237899999986 2455566777777777899999997 5555
Q ss_pred EeCCCeEEEE--------------------ecCCCCccccCCCCcc--cCCCcEEEEEECCCCCcEEEEEeCCCc-----
Q 039302 252 GDCNSCIHLW--------------------EPASDATWNVDPNPFI--GHAASVEDLQWSPTESDVFASCSVDGN----- 304 (479)
Q Consensus 252 g~~dg~I~lw--------------------d~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~dg~----- 304 (479)
+. |-|..- |..++.... +..+. -+.-+|..+...+++. +.+.|-..|.
T Consensus 179 an--GGIethpdfgR~~lNldsMePSlvlld~atG~lie--kh~Lp~~l~~lSiRHld~g~dgt-vwfgcQy~G~~~d~p 253 (366)
T COG3490 179 AN--GGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE--KHTLPASLRQLSIRHLDIGRDGT-VWFGCQYRGPRNDLP 253 (366)
T ss_pred eC--CceecccccCccccchhhcCccEEEEeccccchhh--hccCchhhhhcceeeeeeCCCCc-EEEEEEeeCCCccCC
Confidence 43 334333 222221111 11121 2345677788888777 5544432221
Q ss_pred EEEEEcCCCCceeeEE-------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEE
Q 039302 305 IAIWDTRVGKSALMSF-------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI 377 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~-------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v 377 (479)
-.+=-.+.++ ++..+ ......|-+|+.+.......+|.-..+...+||..++. .+..-. -.....|
T Consensus 254 pLvg~~~~g~-~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~----vv~~a~--l~daaGv 326 (366)
T COG3490 254 PLVGHFRKGE-PLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA----VVSEAA--LPDAAGV 326 (366)
T ss_pred cceeeccCCC-cCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc----EEeccc--ccccccc
Confidence 1111111111 22211 12234677888887774566666666788899999987 333211 1112223
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEE
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.-. . .-|+..+.+|.|.++.
T Consensus 327 a~~--~-~gf~vssg~G~~~~~s 346 (366)
T COG3490 327 AAA--K-GGFAVSSGQGRIIFYS 346 (366)
T ss_pred eec--c-CceEEecCCceEEecc
Confidence 332 2 4467777788888874
No 409
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.49 E-value=18 Score=39.00 Aligned_cols=86 Identities=16% Similarity=0.203 Sum_probs=55.2
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCC--------ccc-------cCCCCc-ccCCCcEEEEEECCCC--CcE
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDA--------TWN-------VDPNPF-IGHAASVEDLQWSPTE--SDV 295 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~--------~~~-------~~~~~~-~~h~~~V~~l~~sp~~--~~~ 295 (479)
-+|..+..||+|. .|+..+..|.+.+.=.+..+ ... +....+ ..+...|..+.|+|.+ ...
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4899999999998 77777766544333222110 000 001111 2345689999999985 347
Q ss_pred EEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 296 FASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 296 l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|++-..|++||+||+.....+...+
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred EEEEecCCEEEEEecCCCCCCeEEE
Confidence 8888889999999998765554443
No 410
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=92.35 E-value=5 Score=38.45 Aligned_cols=169 Identities=12% Similarity=0.124 Sum_probs=85.4
Q ss_pred ecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE-EEEeCCCCCCeEEEEeCCC
Q 039302 178 MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY-AIDWNPVAPGRLVSGDCNS 256 (479)
Q Consensus 178 ~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~s~~~~~~l~sg~~dg 256 (479)
.|.++.-+.+-+.||.+.-..+....+.... ....|..-..+++ .-++...+. .++--+..|
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~----------------~t~~F~~~~dp~f~~~~~~~~~~-~~~F~Sy~G 205 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQK----------------STKVFDPDDDPLFEHPAYSRDGG-RLYFVSYEG 205 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEE----------------EEEESSTTTS-B-S--EEETTTT-EEEEEBTTS
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEe----------------eccccCCCCcccccccceECCCC-eEEEEecCC
Confidence 3444445667788999998888863222100 0011111122222 222333332 555566677
Q ss_pred eEEEEecCCCCccccCCCC-cc-----c--CCCcEEEEEECCCCCcEEEEEe--CCC-------cEEEEEcCCCCceeeE
Q 039302 257 CIHLWEPASDATWNVDPNP-FI-----G--HAASVEDLQWSPTESDVFASCS--VDG-------NIAIWDTRVGKSALMS 319 (479)
Q Consensus 257 ~I~lwd~~~~~~~~~~~~~-~~-----~--h~~~V~~l~~sp~~~~~l~s~s--~dg-------~I~iwD~~~~~~~~~~ 319 (479)
.|+--++............ +. . -.+.-.-+++++..+.+++.-. .+| .|-++|+.+.+ .+..
T Consensus 206 ~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k-rv~R 284 (342)
T PF06433_consen 206 NVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK-RVAR 284 (342)
T ss_dssp EEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE-EEEE
T ss_pred EEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe-EEEE
Confidence 7777776543211000000 00 0 0122334677765553443321 111 37777888875 4555
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCCCCCceEEEeec
Q 039302 320 FKAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sg-s~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
+.. ...+.+|+.+.+...+|.+. ..++.+.+||..+++ .+.++..
T Consensus 285 i~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk----~~~~~~~ 330 (342)
T PF06433_consen 285 IPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGK----LVRSIEQ 330 (342)
T ss_dssp EEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT------EEEEE--
T ss_pred EeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCc----EEeehhc
Confidence 442 23577999999886677654 568999999999988 7777764
No 411
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.34 E-value=4.9 Score=39.58 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=74.2
Q ss_pred ceEEEEeCCCCCCeEEEEe-----------CCC-eEEEEecCCC-CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC
Q 039302 235 EGYAIDWNPVAPGRLVSGD-----------CNS-CIHLWEPASD-ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~-----------~dg-~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~ 301 (479)
...+|+|.+++. ++++-. ..+ .|.+++-..+ +... ....+.......+.|++.+++ ++++ +.
T Consensus 15 ~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d-~~~vfa~~l~~p~Gi~~~~~G--lyV~-~~ 89 (367)
T TIGR02604 15 NPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD-KSNVFAEELSMVTGLAVAVGG--VYVA-TP 89 (367)
T ss_pred CCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc-eeEEeecCCCCccceeEecCC--EEEe-CC
Confidence 456789988876 444432 223 7777764332 2211 011222223356788998876 5554 33
Q ss_pred CCcEEEEEcCCC-----C-ceee-EEec----CCCCEEEEEEcCCCCcEEEEEeCC-------------------CeEEE
Q 039302 302 DGNIAIWDTRVG-----K-SALM-SFKA----HNADVNVISWNRLASCLLASGSDD-------------------GTFSI 351 (479)
Q Consensus 302 dg~I~iwD~~~~-----~-~~~~-~~~~----h~~~v~~l~~~p~~~~~l~sgs~d-------------------g~i~i 351 (479)
...+++.|.... + ..+. .+.. +....+.+.|.|++ .+.++-+.. |.|.-
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 443344455321 1 1111 1221 23457899999998 555544421 33444
Q ss_pred EeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 352 HDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 352 wDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
+|..... +..+...-.....++|+|.+ .++++-..+
T Consensus 169 ~~pdg~~-----~e~~a~G~rnp~Gl~~d~~G-~l~~tdn~~ 204 (367)
T TIGR02604 169 YNPDGGK-----LRVVAHGFQNPYGHSVDSWG-DVFFCDNDD 204 (367)
T ss_pred EecCCCe-----EEEEecCcCCCccceECCCC-CEEEEccCC
Confidence 4444332 22222222334689999954 777664433
No 412
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.32 E-value=12 Score=36.78 Aligned_cols=107 Identities=17% Similarity=0.165 Sum_probs=53.7
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc----cccCCCCccc----CCCcEEEEEECCCCCcEEEEEeCC--
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT----WNVDPNPFIG----HAASVEDLQWSPTESDVFASCSVD-- 302 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~----~~~~~~~~~~----h~~~V~~l~~sp~~~~~l~s~s~d-- 302 (479)
......|++.+++ ++++ +.....++.+...... ..+....+.. +....+.++|.|++. +.++.+..
T Consensus 71 l~~p~Gi~~~~~G--lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~ 146 (367)
T TIGR02604 71 LSMVTGLAVAVGG--VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLA 146 (367)
T ss_pred CCCccceeEecCC--EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecccCCC
Confidence 3355788888765 4443 4333333435432211 1111111211 234578899999998 55544311
Q ss_pred -----------------CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC
Q 039302 303 -----------------GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD 346 (479)
Q Consensus 303 -----------------g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d 346 (479)
|.|.-++..... ...+...-...+.++|++.+ .++++-..+
T Consensus 147 ~~~~~~~~~~~~~~~~~g~i~r~~pdg~~--~e~~a~G~rnp~Gl~~d~~G-~l~~tdn~~ 204 (367)
T TIGR02604 147 SKVTRPGTSDESRQGLGGGLFRYNPDGGK--LRVVAHGFQNPYGHSVDSWG-DVFFCDNDD 204 (367)
T ss_pred ceeccCCCccCcccccCceEEEEecCCCe--EEEEecCcCCCccceECCCC-CEEEEccCC
Confidence 334444444432 22222222345789999988 676664433
No 413
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=92.27 E-value=5.4 Score=38.97 Aligned_cols=169 Identities=12% Similarity=0.077 Sum_probs=76.7
Q ss_pred EECCCCCcEEEEEeCCCc--EEEEEcCCCCceeeEEecCC-CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 287 QWSPTESDVFASCSVDGN--IAIWDTRVGKSALMSFKAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 287 ~~sp~~~~~l~s~s~dg~--I~iwD~~~~~~~~~~~~~h~-~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
+|.++|+.+|.++..||. +.+.|+.++. +..+.... .......++|.+ ..|+-......|+-.|+++.+ .
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e----~ 114 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLE----E 114 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT------E
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCc----E
Confidence 688889866666666665 5566777764 44443332 112245667877 555545555788999999987 3
Q ss_pred EEEeecCCCCeEEEEEeCCCCCEEEEEeC-CCcEEEEECCCCCChHHHHHHhhh-cccc--cCCCCCCCCceEEeecCCC
Q 039302 364 VAHFEYHKHPVTSIEWSPHEGSTLAVSSA-DNQLTIWDLSLEKDEEEEAEFKAK-TREQ--VNAPEDLPPQLLFIHQGQK 439 (479)
Q Consensus 364 ~~~~~~h~~~I~~v~~sp~~~~~las~s~-Dg~I~iwdl~~~~~~~~~~~~~~~-~~~~--~~~~~~~p~~l~~~h~g~~ 439 (479)
...+......+-...|..+....++.+.. ... |............+-.+ .... ...... .+...++.-..
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~----d~~~l~~~~~f~e~~~a~p~~~i~~idl~t--G~~~~v~~~~~ 188 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISRE----DWKPLTKWKGFREFYEARPHCRIFTIDLKT--GERKVVFEDTD 188 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGG----G-----SHHHHHHHHHC---EEEEEEETTT----EEEEEEESS
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeeh----hccCccccHHHHHHHhhCCCceEEEEECCC--CceeEEEecCc
Confidence 44455556666667775432233333321 000 00000011111111000 0000 000111 12333333334
Q ss_pred CeeeEEEeCCCCcEEEEEcCCC---c--eEEeee
Q 039302 440 DLKELHWHTQVPGMIVSTAADG---F--NILMPS 468 (479)
Q Consensus 440 ~V~~v~w~p~~~~ll~s~~~dg---i--~iw~~~ 468 (479)
.+..+.|+|..|.+|+-|-++. | +||-+.
T Consensus 189 wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 189 WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp -EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEE
T ss_pred cccCcccCCCCCCEEEEeccCCcceeceEEEEEE
Confidence 6889999999999999988765 4 788664
No 414
>PHA03098 kelch-like protein; Provisional
Probab=92.27 E-value=5.8 Score=41.31 Aligned_cols=144 Identities=10% Similarity=0.154 Sum_probs=68.2
Q ss_pred eEEEEeCC-----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC------CcEEEEEcCCCCce
Q 039302 248 RLVSGDCN-----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD------GNIAIWDTRVGKSA 316 (479)
Q Consensus 248 ~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d------g~I~iwD~~~~~~~ 316 (479)
.++.|+.+ ..+..||+.+ ..|.... .+.........+.. ++. +++.||.+ ..+..||..+..-.
T Consensus 345 lyv~GG~~~~~~~~~v~~yd~~~-~~W~~~~-~lp~~r~~~~~~~~--~~~-iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 345 IYVIGGIYNSISLNTVESWKPGE-SKWREEP-PLIFPRYNPCVVNV--NNL-IYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred EEEEeCCCCCEecceEEEEcCCC-CceeeCC-CcCcCCccceEEEE--CCE-EEEECCcCCCCcccceEEEEeCCCCeee
Confidence 66667654 3577788866 3444211 11111111111222 344 77777732 45788998765311
Q ss_pred -eeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--------eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 317 -LMSFKAHNADVNVISWNRLASCLLASGSDDG--------TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 317 -~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--------~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
+..+.........+.. ++ .+++.||.++ .+.+||..+.+ +..+..+.........+.+ ++.++
T Consensus 420 ~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~v~~yd~~~~~--W~~~~~~~~~r~~~~~~~~---~~~iy 491 (534)
T PHA03098 420 KGSPLPISHYGGCAIYH--DG-KIYVIGGISYIDNIKVYNIVESYNPVTNK--WTELSSLNFPRINASLCIF---NNKIY 491 (534)
T ss_pred ecCCCCccccCceEEEE--CC-EEEEECCccCCCCCcccceEEEecCCCCc--eeeCCCCCcccccceEEEE---CCEEE
Confidence 1111111111122222 23 6777776532 38889988764 2222222111111122222 34777
Q ss_pred EEEeCC-----CcEEEEECCCC
Q 039302 388 AVSSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 388 as~s~D-----g~I~iwdl~~~ 404 (479)
+.||.+ +.|.+||....
T Consensus 492 v~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 492 VVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred EEcCCcCCcccceeEEEeCCCC
Confidence 777764 46778887765
No 415
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=91.95 E-value=15 Score=36.79 Aligned_cols=200 Identities=12% Similarity=0.062 Sum_probs=101.5
Q ss_pred ceeEEEEecCC----CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 171 CVNRIRAMSQN----PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 171 ~V~~v~~~p~~----~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
....+++-|-| ..+|+.-+-||.+.+|+-+... ....+.+ -----.+.+++...
T Consensus 130 ~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~---------------------f~~~lp~-~llPgPl~Y~~~tD 187 (418)
T PF14727_consen 130 TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA---------------------FSRFLPD-FLLPGPLCYCPRTD 187 (418)
T ss_pred ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE---------------------EEEEcCC-CCCCcCeEEeecCC
Confidence 34444444433 4788888999999999977621 1111221 11122467777776
Q ss_pred CeEEEEeCCCeEEEEecCCCCcccc-------------CCCCcc-----cCCCcEEEE---EECCCCCcEEEEEeCCCcE
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNV-------------DPNPFI-----GHAASVEDL---QWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~-------------~~~~~~-----~h~~~V~~l---~~sp~~~~~l~s~s~dg~I 305 (479)
.|++++.+..|..|....-..... ..+.+. .-...+.+| .++.....+++-| ..++
T Consensus 188 -sfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg--er~L 264 (418)
T PF14727_consen 188 -SFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG--ERSL 264 (418)
T ss_pred -EEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe--cceE
Confidence 888888888888887532110000 000000 011233333 3333333233333 2445
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEE-------EcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe--EE
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVIS-------WNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV--TS 376 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~-------~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I--~~ 376 (479)
.+.+-.. . +...+.......|++ ..+.....++.++.++++.||.-.+.. -.-.....|| .-
T Consensus 265 f~l~~~G-~--l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~------WsA~l~~~PVal~v 335 (418)
T PF14727_consen 265 FCLKDNG-S--LRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLV------WSAQLPHVPVALSV 335 (418)
T ss_pred EEEcCCC-e--EEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEE------EecCCCCCCEEEEe
Confidence 5554432 1 222221222212211 122322358889999999998654432 2222222333 22
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..|.. -..+|++-+.+|.+.+-=|.+..
T Consensus 336 ~~~~~-~~G~IV~Ls~~G~L~v~YLGTdP 363 (418)
T PF14727_consen 336 ANFNG-LKGLIVSLSDEGQLSVSYLGTDP 363 (418)
T ss_pred cccCC-CCceEEEEcCCCcEEEEEeCCCC
Confidence 22333 34789999999999998877653
No 416
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.78 E-value=11 Score=34.98 Aligned_cols=150 Identities=15% Similarity=0.125 Sum_probs=83.8
Q ss_pred ceeEEEEecCCCcEEEEEe--CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 171 CVNRIRAMSQNPHICASWA--DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.+...++++++..+.+... ....++++.... .....+.+ ..+..-.|.+++. .
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~----------------------~~~~~~~g--~~l~~PS~d~~g~-~ 79 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG----------------------PVRPVLTG--GSLTRPSWDPDGW-V 79 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC----------------------cceeeccC--CccccccccCCCC-E
Confidence 6888999999966666652 334455554433 11122222 2677888999965 5
Q ss_pred EEEEeCCCeEEEEe-cCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE--eCCCcEEEEEcCCCC-c-------ee
Q 039302 249 LVSGDCNSCIHLWE-PASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC--SVDGNIAIWDTRVGK-S-------AL 317 (479)
Q Consensus 249 l~sg~~dg~I~lwd-~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~--s~dg~I~iwD~~~~~-~-------~~ 317 (479)
.+....+...+++. ...+...... .....-...|..+.++|+|..+.+.. ..++.|.+--+.... . +.
T Consensus 80 W~v~~~~~~~~~~~~~~~g~~~~~~-v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~ 158 (253)
T PF10647_consen 80 WTVDDGSGGVRVVRDSASGTGEPVE-VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPR 158 (253)
T ss_pred EEEEcCCCceEEEEecCCCcceeEE-ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccce
Confidence 55556566666664 2222221110 11111122899999999999443333 235677776543221 1 11
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCC
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDG 347 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg 347 (479)
.........+..++|.+++ .+++.+...+
T Consensus 159 ~~~~~~~~~v~~v~W~~~~-~L~V~~~~~~ 187 (253)
T PF10647_consen 159 RVAPPLLSDVTDVAWSDDS-TLVVLGRSAG 187 (253)
T ss_pred EecccccCcceeeeecCCC-EEEEEeCCCC
Confidence 1122335678999999998 5555554443
No 417
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.74 E-value=20 Score=37.89 Aligned_cols=169 Identities=14% Similarity=0.191 Sum_probs=82.0
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 224 SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+.++.-...++..|.|+.+. .|+.-..+|++++|++........ ...+......|..+.|..+|- ++ -..+|
T Consensus 74 ~lL~~~~w~~~~lI~mgWs~~e--eLI~v~k~g~v~Vy~~~ge~ie~~-svg~e~~~~~I~ec~~f~~GV--av-lt~~g 147 (829)
T KOG2280|consen 74 QLLGRILWKHGELIGMGWSDDE--ELICVQKDGTVHVYGLLGEFIESN-SVGFESQMSDIVECRFFHNGV--AV-LTVSG 147 (829)
T ss_pred cchHHHHhcCCCeeeecccCCc--eEEEEeccceEEEeecchhhhccc-ccccccccCceeEEEEecCce--EE-EecCC
Confidence 4444443334488899999877 577788899999999854322110 011122233354455444442 22 23344
Q ss_pred cEE-EEEcCCCCceeeEEec-CCCCEEEEEEc---CCC-CcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 304 NIA-IWDTRVGKSALMSFKA-HNADVNVISWN---RLA-SCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 304 ~I~-iwD~~~~~~~~~~~~~-h~~~v~~l~~~---p~~-~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
.+. +-+..... ..++.. ......+.+|. |.. ...|+--. ..+ ..++-...... ....+......+..
T Consensus 148 ~v~~i~~~~~~~--~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~---q~~~~~~~~~~~~k 221 (829)
T KOG2280|consen 148 QVILINGVEEPK--LRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRV---QLHALSWPNSSVVK 221 (829)
T ss_pred cEEEEcCCCcch--hhhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceecccc---cccccCCCCceEEE
Confidence 443 43333321 111111 11111112332 211 11121111 111 12222222221 22333333466788
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+..||+. .+||-=...|.|.+-+....+
T Consensus 222 i~VS~n~-~~laLyt~~G~i~~vs~D~~~ 249 (829)
T KOG2280|consen 222 ISVSPNR-RFLALYTETGKIWVVSIDLSQ 249 (829)
T ss_pred EEEcCCc-ceEEEEecCCcEEEEecchhh
Confidence 8999955 888888899999888776653
No 418
>PHA02713 hypothetical protein; Provisional
Probab=91.72 E-value=6 Score=41.46 Aligned_cols=94 Identities=7% Similarity=0.179 Sum_probs=50.2
Q ss_pred eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC------CcEEEEEcCC-CC-ceeeEEecCCCCEE
Q 039302 257 CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD------GNIAIWDTRV-GK-SALMSFKAHNADVN 328 (479)
Q Consensus 257 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d------g~I~iwD~~~-~~-~~~~~~~~h~~~v~ 328 (479)
.+..||+.+ ..|.... ++.........+.+ ++. +++.|+.+ ..+..||..+ .+ ..+..+........
T Consensus 433 ~ve~YDP~t-d~W~~v~-~m~~~r~~~~~~~~--~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~ 507 (557)
T PHA02713 433 KVIRYDTVN-NIWETLP-NFWTGTIRPGVVSH--KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH 507 (557)
T ss_pred eEEEECCCC-CeEeecC-CCCcccccCcEEEE--CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccce
Confidence 577888876 3454321 22111111111222 244 77777754 2467899887 32 12222222222333
Q ss_pred EEEEcCCCCcEEEEEeCCC--eEEEEeCCCCC
Q 039302 329 VISWNRLASCLLASGSDDG--TFSIHDLRLLK 358 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~ 358 (479)
.+.+ ++ .+.++||.+| .+..||..+.+
T Consensus 508 ~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 508 TILH--DN-TIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred eEEE--CC-EEEEEeeecceeehhhcCccccc
Confidence 3333 23 8999999998 77888887766
No 419
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=91.64 E-value=18 Score=37.22 Aligned_cols=146 Identities=15% Similarity=0.251 Sum_probs=78.2
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCC---CcEE-EEEECCCCCcEEEEEe---------CCCcEEEEEcCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHA---ASVE-DLQWSPTESDVFASCS---------VDGNIAIWDTRVG 313 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~---~~V~-~l~~sp~~~~~l~s~s---------~dg~I~iwD~~~~ 313 (479)
+++.++.+|.|+.+|..+++. |... ...+. ..+. ...+. +. +++.++ .+|.|..+|..++
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~---~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG 185 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFG---NNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETG 185 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeec---CCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCC
Confidence 788888899999999988654 2211 11110 0010 11111 12 444443 3678899999888
Q ss_pred CceeeEEecCCCC--------------------E-EEEEEcCCCCcEEEEEeCCC------------------eEEEEeC
Q 039302 314 KSALMSFKAHNAD--------------------V-NVISWNRLASCLLASGSDDG------------------TFSIHDL 354 (479)
Q Consensus 314 ~~~~~~~~~h~~~--------------------v-~~l~~~p~~~~~l~sgs~dg------------------~i~iwDl 354 (479)
+ .+-.+...... + ...++.+.+ .+++.++.++ .|.-+|+
T Consensus 186 ~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~-g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~ 263 (488)
T cd00216 186 K-LLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKT-NLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDA 263 (488)
T ss_pred c-eeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCC-CEEEEECCCCCCCccCCccCCCCCCceeeEEEEcC
Confidence 6 33333221110 0 123334444 5666676555 6888899
Q ss_pred CCCCCCCceEEEeec--CCC----CeEEEEEe---CCCC---CEEEEEeCCCcEEEEECCCCC
Q 039302 355 RLLKGGDSVVAHFEY--HKH----PVTSIEWS---PHEG---STLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 355 r~~~~~~~~~~~~~~--h~~----~I~~v~~s---p~~~---~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+++ .+-.+.. |.. ......+. ..++ .+++.++.+|.+...|..+++
T Consensus 264 ~tG~----~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 264 DTGK----VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred CCCC----EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCc
Confidence 8887 4444432 211 00011111 1122 257778889999888888764
No 420
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.46 E-value=8.2 Score=34.76 Aligned_cols=103 Identities=14% Similarity=0.223 Sum_probs=67.4
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEE--cCCCC----ceeeEEecC----CCCEEEEEEcCCCCcEEEEEeCCCeEEEE
Q 039302 283 VEDLQWSPTESDVFASCSVDGNIAIWD--TRVGK----SALMSFKAH----NADVNVISWNRLASCLLASGSDDGTFSIH 352 (479)
Q Consensus 283 V~~l~~sp~~~~~l~s~s~dg~I~iwD--~~~~~----~~~~~~~~h----~~~v~~l~~~p~~~~~l~sgs~dg~i~iw 352 (479)
-+.++|+.+.+.+..+-+.+-+|.-|| ..++. ..+..++.. .-.--.++....| ++.++.-..|+|...
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~ng~~V~~~ 238 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFNGGTVQKV 238 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEecCcEEEEE
Confidence 357888877776666777777887777 44432 122222110 0111233445556 788888888999999
Q ss_pred eCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 353 DLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 353 Dlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
|..+++ .+..+.-....|+|++|--.+-..|.+.
T Consensus 239 dp~tGK----~L~eiklPt~qitsccFgGkn~d~~yvT 272 (310)
T KOG4499|consen 239 DPTTGK----ILLEIKLPTPQITSCCFGGKNLDILYVT 272 (310)
T ss_pred CCCCCc----EEEEEEcCCCceEEEEecCCCccEEEEE
Confidence 999998 7888888899999999964322344443
No 421
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=90.65 E-value=1.7 Score=37.70 Aligned_cols=32 Identities=28% Similarity=0.478 Sum_probs=27.1
Q ss_pred CCeEEEEEeCCC-----CCEEEEEeCCCcEEEEECCC
Q 039302 372 HPVTSIEWSPHE-----GSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 372 ~~I~~v~~sp~~-----~~~las~s~Dg~I~iwdl~~ 403 (479)
..|.+++|||.+ +.+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 378999999943 46899999999999998774
No 422
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=90.57 E-value=30 Score=37.81 Aligned_cols=198 Identities=11% Similarity=0.045 Sum_probs=99.8
Q ss_pred CCcceeEEEEecC--CCc---EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC--CCceEEEE
Q 039302 168 HQGCVNRIRAMSQ--NPH---ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH--KDEGYAID 240 (479)
Q Consensus 168 H~~~V~~v~~~p~--~~~---~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~ 240 (479)
...+|.|+.++|- +++ ++|.|..+..+.+--....... .....+.+. ...|.-..
T Consensus 529 ~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~------------------~~~~~l~~~~iPRSIl~~~ 590 (1096)
T KOG1897|consen 529 FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL------------------ITHEQLSGEIIPRSILLTT 590 (1096)
T ss_pred ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce------------------eeeeccCCCccchheeeEE
Confidence 3578999999986 344 8888887776665443331100 000001111 12344444
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
+-.+.. +|+++..||.+.-+.+..........+...--+.++.=-.|+..+++.++++| |.-..+|-.+.. -....+
T Consensus 591 ~e~d~~-yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~s-drP~viY~~n~k-Lv~spl 667 (1096)
T KOG1897|consen 591 FEGDIH-YLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALS-DRPTVIYSSNGK-LVYSPL 667 (1096)
T ss_pred eeccce-EEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeC-CCCEEEEecCCc-EEEecc
Confidence 544443 99999999998777664432211111211112456666677777775666555 666667765542 111111
Q ss_pred ecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 321 KAHNADVNVISWNRL-ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~-~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
. -..--..+.|+.+ .+..|+++. .+.+++.-+...++ -.+++..- ......+++.+ ....+++.+.
T Consensus 668 s-~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqk--l~irtvpl-~~~prrI~~q~-~sl~~~v~s~ 734 (1096)
T KOG1897|consen 668 S-LKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQK--LHIRTVPL-GESPRRICYQE-SSLTFGVLSN 734 (1096)
T ss_pred c-hHHhhhhcccccccCCceEEEec-CCceEEEEecchhh--cceeeecC-CCChhheEecc-cceEEEEEec
Confidence 1 1111122234322 223455544 45666665554432 12344333 34557788877 3255555543
No 423
>PRK10115 protease 2; Provisional
Probab=90.24 E-value=30 Score=37.33 Aligned_cols=266 Identities=11% Similarity=-0.010 Sum_probs=128.3
Q ss_pred CCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCC
Q 039302 50 EGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNK 129 (479)
Q Consensus 50 ~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~ 129 (479)
..|++.+|+..+..=+. -|---.+.|-||+ .+|+.+.-+.|.+...|+|.++..
T Consensus 109 ~~~~~llD~n~~a~~~~---~~~l~~~~~Spdg-----------~~la~~~d~~G~E~~~l~v~d~~t------------ 162 (686)
T PRK10115 109 DEWETLLDANKRAAHSE---FYTLGGMAITPDN-----------TIMALAEDFLSRRQYGIRFRNLET------------ 162 (686)
T ss_pred CCCEEEEcchhhccCCC---cEEEeEEEECCCC-----------CEEEEEecCCCcEEEEEEEEECCC------------
Confidence 34789999987632111 1222356666663 267777777888888898887721
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCC-----ceEEEEeCCCCcc
Q 039302 130 PATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADT-----GHVQVWDFRSHLN 204 (479)
Q Consensus 130 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~d-----g~V~iwd~~~~~~ 204 (479)
+.... ..+.... ..+.|.+++..++.+...+ ..|+.+++.+...
T Consensus 163 ---------------------------g~~l~--~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~ 211 (686)
T PRK10115 163 ---------------------------GNWYP--ELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPAS 211 (686)
T ss_pred ---------------------------CCCCC--ccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChh
Confidence 00000 0011111 4589999887777765433 3677778776211
Q ss_pred cccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC-CCCCeEEEEe---CCCeEEEEecCCC-CccccCCCCcccC
Q 039302 205 ALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP-VAPGRLVSGD---CNSCIHLWEPASD-ATWNVDPNPFIGH 279 (479)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~~l~sg~---~dg~I~lwd~~~~-~~~~~~~~~~~~h 279 (479)
+....+.......+...+.+ ++. +++..+ .++.+.+++.... ..+. .+..+
T Consensus 212 -------------------~d~lv~~e~~~~~~~~~~~s~d~~-~l~i~~~~~~~~~~~l~~~~~~~~~~~----~~~~~ 267 (686)
T PRK10115 212 -------------------QDELVYEEKDDTFYVSLHKTTSKH-YVVIHLASATTSEVLLLDAELADAEPF----VFLPR 267 (686)
T ss_pred -------------------HCeEEEeeCCCCEEEEEEEcCCCC-EEEEEEECCccccEEEEECcCCCCCce----EEEEC
Confidence 22223333222333233333 555 443333 2357888885321 1111 11111
Q ss_pred CC-cEEEEEECCCCCcEEEEEeC---CCcEEEEEcCCCCceeeEEecC--CCCEEEEEEcCCCCcEEEEEeCCCeEEEEe
Q 039302 280 AA-SVEDLQWSPTESDVFASCSV---DGNIAIWDTRVGKSALMSFKAH--NADVNVISWNRLASCLLASGSDDGTFSIHD 353 (479)
Q Consensus 280 ~~-~V~~l~~sp~~~~~l~s~s~---dg~I~iwD~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~~l~sgs~dg~i~iwD 353 (479)
.. ....+. +..+. +++.... ...|...++.... ....+..+ ...|..+.+.. ..++++...+|.-+++-
T Consensus 268 ~~~~~~~~~-~~~~~-ly~~tn~~~~~~~l~~~~~~~~~-~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~~g~~~l~~ 342 (686)
T PRK10115 268 RKDHEYSLD-HYQHR-FYLRSNRHGKNFGLYRTRVRDEQ-QWEELIPPRENIMLEGFTLFT--DWLVVEERQRGLTSLRQ 342 (686)
T ss_pred CCCCEEEEE-eCCCE-EEEEEcCCCCCceEEEecCCCcc-cCeEEECCCCCCEEEEEEEEC--CEEEEEEEeCCEEEEEE
Confidence 11 122222 32333 3333322 2234444444221 22334444 23688888873 36788888888765554
Q ss_pred CCCCCCCCceEEEee-cCCCCeEEEEEe--CCCCCEEEEEeC---CCcEEEEECCCC
Q 039302 354 LRLLKGGDSVVAHFE-YHKHPVTSIEWS--PHEGSTLAVSSA---DNQLTIWDLSLE 404 (479)
Q Consensus 354 lr~~~~~~~~~~~~~-~h~~~I~~v~~s--p~~~~~las~s~---Dg~I~iwdl~~~ 404 (479)
+..... .+..+. .....+..+.++ +++..++++.+. -+.+..+|+...
T Consensus 343 ~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 343 INRKTR---EVIGIAFDDPAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred EcCCCC---ceEEecCCCCceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 432211 233332 222233334444 333345555443 456777787654
No 424
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=90.18 E-value=15 Score=33.92 Aligned_cols=132 Identities=17% Similarity=0.223 Sum_probs=75.3
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEec
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEP 263 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~ 263 (479)
+..| =.++...+||..+ .+.+.++.- .++.+.|+ .++. .|+..+....|+++|.
T Consensus 103 ~qLT-Wk~~~~f~yd~~t---------------------l~~~~~~~y-~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP 156 (264)
T PF05096_consen 103 YQLT-WKEGTGFVYDPNT---------------------LKKIGTFPY-PGEGWGLT--SDGK-RLIMSDGSSRLYFLDP 156 (264)
T ss_dssp EEEE-SSSSEEEEEETTT---------------------TEEEEEEE--SSS--EEE--ECSS-CEEEE-SSSEEEEE-T
T ss_pred EEEE-ecCCeEEEEcccc---------------------ceEEEEEec-CCcceEEE--cCCC-EEEEECCccceEEECC
Confidence 3444 5678999999987 455566643 46889998 4455 6777776789999998
Q ss_pred CCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe---------------cCCCCE
Q 039302 264 ASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK---------------AHNADV 327 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~---------------~h~~~v 327 (479)
.+............+ --..++.+.|. +|. +.|=.-....|...|..++. ....+. ....-.
T Consensus 157 ~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~-IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 157 ETFKEVRTIQVTDNGRPVSNLNELEYI-NGK-IYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp TT-SEEEEEE-EETTEE---EEEEEEE-TTE-EEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred cccceEEEEEEEECCEECCCcEeEEEE-cCE-EEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCCee
Confidence 765432211111111 11245666665 344 56655566667777887775 222221 113468
Q ss_pred EEEEEcCCCCcEEEEEe
Q 039302 328 NVISWNRLASCLLASGS 344 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs 344 (479)
|.|+|+|....+++||=
T Consensus 234 NGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTTTEEEEEET
T ss_pred EeEeEeCCCCEEEEEeC
Confidence 99999999878888873
No 425
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.11 E-value=0.049 Score=53.43 Aligned_cols=145 Identities=14% Similarity=0.254 Sum_probs=98.6
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
......|-+.+. -++.++.+..+..||-.. +... -..-++...+++|..++...++.+-..+.+.+||+.+..
T Consensus 36 ~pi~~~w~~e~~-nlavaca~tiv~~YD~ag-q~~l-----e~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGH-NLAVACANTIVIYYDKAG-QVIL-----ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY 108 (615)
T ss_pred ccceeeEecCCC-ceehhhhhhHHHhhhhhc-ceec-----ccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh
Confidence 334567888887 477777788888888543 2211 111245567889998888566677788999999998764
Q ss_pred ceeeEEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 315 SALMSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 315 ~~~~~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
.....+. .|.. .-+.|++.. ..++.|...|.+.|+..+..+ .+.....|...+++++|.+. .+.+.++.|
T Consensus 109 tqqLE~gg~~s~--sll~wsKg~-~el~ig~~~gn~viynhgtsR----~iiv~Gkh~RRgtq~av~lE--d~vil~dcd 179 (615)
T KOG2247|consen 109 TQQLESGGTSSK--SLLAWSKGT-PELVIGNNAGNIVIYNHGTSR----RIIVMGKHQRRGTQIAVTLE--DYVILCDCD 179 (615)
T ss_pred HHHHhccCcchH--HHHhhccCC-ccccccccccceEEEeccchh----hhhhhcccccceeEEEeccc--ceeeecCcH
Confidence 2211221 1222 226888877 788889999999999998876 34444448999999999994 455555555
Q ss_pred Cc
Q 039302 394 NQ 395 (479)
Q Consensus 394 g~ 395 (479)
..
T Consensus 180 ~~ 181 (615)
T KOG2247|consen 180 NT 181 (615)
T ss_pred HH
Confidence 43
No 426
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.91 E-value=7.9 Score=38.27 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=94.0
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
-+.+-|...+ .++.+-..|.+.-|-+...+. .++...-....++|.+|.|+++.+ .+|+--.+.+|.+++....+.
T Consensus 25 sngvFfDDaN--kqlfavrSggatgvvvkgpnd-DVpiSfdm~d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~ 100 (657)
T KOG2377|consen 25 SNGVFFDDAN--KQLFAVRSGGATGVVVKGPND-DVPISFDMDDKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNS 100 (657)
T ss_pred ccceeeccCc--ceEEEEecCCeeEEEEeCCCC-CCCceeeecCCCceeEEEeccCcc-eEEEEecCceEEEEecCCCch
Confidence 3344444333 344444456666776654332 111222223457999999999998 999999999999998854321
Q ss_pred ---eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-
Q 039302 316 ---ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS- 391 (479)
Q Consensus 316 ---~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s- 391 (479)
.....+..+..|....|.... -+|.-++.| +-+|-...... .++..+.|+..|.=-.|+|.-.-.|.+.+
T Consensus 101 ~l~~~~~ck~k~~~IlGF~W~~s~--e~A~i~~~G-~e~y~v~pekr---slRlVks~~~nvnWy~yc~et~v~LL~t~~ 174 (657)
T KOG2377|consen 101 QLEYTQECKTKNANILGFCWTSST--EIAFITDQG-IEFYQVLPEKR---SLRLVKSHNLNVNWYMYCPETAVILLSTTV 174 (657)
T ss_pred hhHHHHHhccCcceeEEEEEecCe--eEEEEecCC-eEEEEEchhhh---hhhhhhhcccCccEEEEccccceEeeeccc
Confidence 122234445568888998753 556555544 56666554433 45666778888888889885533334433
Q ss_pred CCCcEEEEECC
Q 039302 392 ADNQLTIWDLS 402 (479)
Q Consensus 392 ~Dg~I~iwdl~ 402 (479)
..+++.=+-++
T Consensus 175 ~~n~lnpf~~~ 185 (657)
T KOG2377|consen 175 LENVLNPFHFR 185 (657)
T ss_pred cccccccEEEe
Confidence 34444444443
No 427
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=88.87 E-value=4.9 Score=34.80 Aligned_cols=31 Identities=23% Similarity=0.438 Sum_probs=26.2
Q ss_pred ceEEEEeCCCCCC-----eEEEEeCCCeEEEEecCC
Q 039302 235 EGYAIDWNPVAPG-----RLVSGDCNSCIHLWEPAS 265 (479)
Q Consensus 235 ~v~~l~~s~~~~~-----~l~sg~~dg~I~lwd~~~ 265 (479)
.+.+++|||.|-+ .|++...+|.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 7889999997643 799999999999998754
No 428
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=88.60 E-value=42 Score=36.77 Aligned_cols=227 Identities=8% Similarity=0.106 Sum_probs=123.4
Q ss_pred cCCcceeEEEEe---cC---CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC---CceE
Q 039302 167 AHQGCVNRIRAM---SQ---NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK---DEGY 237 (479)
Q Consensus 167 ~H~~~V~~v~~~---p~---~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~ 237 (479)
.-..+|..|+|. .. ...+|+. -....+.|+...-+.. ... ...........++..+..+. .+..
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~-~~~-----~~~~~s~i~~~~l~~i~~~~tgg~~~a 149 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRV-ISS-----IRSRPSRIDPNPLLTISSSDTGGFPHA 149 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccc-ccc-----ccCCccccccceeEEechhhcCCCccc
Confidence 456788888888 21 1246665 3445678887333211 000 00000011345666665332 3677
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc-----cccCCCCcccC-------CCcEEEEEECCCCCcEEEEEeCCCcE
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT-----WNVDPNPFIGH-------AASVEDLQWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~-----~~~~~~~~~~h-------~~~V~~l~~sp~~~~~l~s~s~dg~I 305 (479)
.++|+|.....||..+..|.-.||++..... +... ....|+ .+.-..|.|.++.. .|+.++ ...+
T Consensus 150 Dv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~-~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~-r~~l 226 (765)
T PF10214_consen 150 DVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLS-RNISGSIIFDPEELSNWKRILWVSDSN-RLLVCN-RSKL 226 (765)
T ss_pred eEEeccCccceEEEEeccCcEEEEEeccccccCCcceeec-cCCCccccCCCcccCcceeeEecCCCC-EEEEEc-CCce
Confidence 9999999888999999999999999922111 1110 000111 13345788987776 666666 4678
Q ss_pred EEEEcCCCCcee-eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---CCCCeEEEEEeC
Q 039302 306 AIWDTRVGKSAL-MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---HKHPVTSIEWSP 381 (479)
Q Consensus 306 ~iwD~~~~~~~~-~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---h~~~I~~v~~sp 381 (479)
.++|+.+..... .........|..+.-++....+++.-. ...|...|++........+...+. ..++-..+....
T Consensus 227 ~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~~ 305 (765)
T PF10214_consen 227 MLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQK 305 (765)
T ss_pred EEEECCCCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCCCCCeeeeeecccccCCCCCceEEEEEE
Confidence 999999875311 222334567888888877333333332 367888888874311113333332 122212222221
Q ss_pred C-CC--CEEEEEeCCCcEEEEECCCC
Q 039302 382 H-EG--STLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 382 ~-~~--~~las~s~Dg~I~iwdl~~~ 404 (479)
. +. .+++.+-....|.+|.+...
T Consensus 306 ~~~~~~~~~lyS~~~~~v~v~~f~~~ 331 (765)
T PF10214_consen 306 VGDTDFVVFLYSRLNPLVYVYFFSFS 331 (765)
T ss_pred cCCCEEEEEEEcCCCCcEEEEEEecC
Confidence 1 11 23344445778888888544
No 429
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=88.60 E-value=11 Score=35.46 Aligned_cols=115 Identities=17% Similarity=0.297 Sum_probs=69.4
Q ss_pred CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe------CCCcEEEEEcCCCCceeeEEec-----CC
Q 039302 256 SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS------VDGNIAIWDTRVGKSALMSFKA-----HN 324 (479)
Q Consensus 256 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s------~dg~I~iwD~~~~~~~~~~~~~-----h~ 324 (479)
..||+||+.. ..|.. .-.+-.+.|++++|..+.. ++++|. ....+..||+.... ...+.. -.
T Consensus 16 ~~lC~yd~~~-~qW~~---~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~--w~~~~~~~s~~ip 88 (281)
T PF12768_consen 16 PGLCLYDTDN-SQWSS---PGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQT--WSSLGGGSSNSIP 88 (281)
T ss_pred CEEEEEECCC-CEeec---CCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCe--eeecCCcccccCC
Confidence 4799999866 55653 2334567899999985555 777764 35678889988753 333333 23
Q ss_pred CCEEEEEEcCC-CCcEEEEEe-CCC--eEEEEeCCCCCCCCceEEE-eecCCCCeEEEEEeC
Q 039302 325 ADVNVISWNRL-ASCLLASGS-DDG--TFSIHDLRLLKGGDSVVAH-FEYHKHPVTSIEWSP 381 (479)
Q Consensus 325 ~~v~~l~~~p~-~~~~l~sgs-~dg--~i~iwDlr~~~~~~~~~~~-~~~h~~~I~~v~~sp 381 (479)
++|+.+.+... ...+.++|. .+| .|..||-.+.. .+.. .......|..+++-|
T Consensus 89 gpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~----~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 89 GPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWS----SIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred CcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceE----eccccccCCCCEEEEEEEEe
Confidence 67888887433 334555554 333 57777766554 2222 222244566666554
No 430
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.48 E-value=0.091 Score=51.61 Aligned_cols=112 Identities=16% Similarity=0.304 Sum_probs=81.5
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEeCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDWNPVA 245 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~ 245 (479)
.-++..-.++|..+++.+++.+-..+.+.|||+++... ....+.+ |.... +.|++..
T Consensus 72 n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt--------------------qqLE~gg~~s~sl--l~wsKg~ 129 (615)
T KOG2247|consen 72 NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT--------------------QQLESGGTSSKSL--LAWSKGT 129 (615)
T ss_pred CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH--------------------HHHhccCcchHHH--HhhccCC
Confidence 34567778889888887887888899999999987321 1111222 22232 7899988
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
+ .++.|-..|.+.|++..+... ....| |...+.+++|.+.+. .+.++.|..+.+-
T Consensus 130 ~-el~ig~~~gn~viynhgtsR~-----iiv~Gkh~RRgtq~av~lEd~--vil~dcd~~L~v~ 185 (615)
T KOG2247|consen 130 P-ELVIGNNAGNIVIYNHGTSRR-----IIVMGKHQRRGTQIAVTLEDY--VILCDCDNTLSVT 185 (615)
T ss_pred c-cccccccccceEEEeccchhh-----hhhhcccccceeEEEecccce--eeecCcHHHHHHh
Confidence 7 899999999999999877544 22345 889999999999874 7777777665543
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=88.05 E-value=18 Score=37.04 Aligned_cols=141 Identities=8% Similarity=0.025 Sum_probs=68.6
Q ss_pred eEEEEeCC--CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC---cEEEEEcCCCCce-eeEEe
Q 039302 248 RLVSGDCN--SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG---NIAIWDTRVGKSA-LMSFK 321 (479)
Q Consensus 248 ~l~sg~~d--g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg---~I~iwD~~~~~~~-~~~~~ 321 (479)
..+.|+.+ ..+..|+..+ ..|... .++.........+.. ++. +++.||.++ .+..||.++..-. +....
T Consensus 321 iYviGG~~~~~sve~ydp~~-n~W~~~-~~l~~~r~~~~~~~~--~g~-IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~ 395 (480)
T PHA02790 321 LYVVGGLPNPTSVERWFHGD-AAWVNM-PSLLKPRCNPAVASI--NNV-IYVIGGHSETDTTTEYLLPNHDQWQFGPSTY 395 (480)
T ss_pred EEEECCcCCCCceEEEECCC-CeEEEC-CCCCCCCcccEEEEE--CCE-EEEecCcCCCCccEEEEeCCCCEEEeCCCCC
Confidence 56666653 3577888754 344321 222211111122222 344 778887654 4678888765310 00011
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC-----CcE
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD-----NQL 396 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D-----g~I 396 (479)
........+.+. + .+.+.|+ .+.+||.++.. +..+..+.........+.. ++.+.+.||.+ ..|
T Consensus 396 ~~r~~~~~~~~~--~-~IYv~GG---~~e~ydp~~~~--W~~~~~m~~~r~~~~~~v~---~~~IYviGG~~~~~~~~~v 464 (480)
T PHA02790 396 YPHYKSCALVFG--R-RLFLVGR---NAEFYCESSNT--WTLIDDPIYPRDNPELIIV---DNKLLLIGGFYRGSYIDTI 464 (480)
T ss_pred CccccceEEEEC--C-EEEEECC---ceEEecCCCCc--EeEcCCCCCCccccEEEEE---CCEEEEECCcCCCcccceE
Confidence 111111222332 3 6777774 57789987654 3333333222222222332 34788888764 356
Q ss_pred EEEECCCC
Q 039302 397 TIWDLSLE 404 (479)
Q Consensus 397 ~iwdl~~~ 404 (479)
.+||....
T Consensus 465 e~Yd~~~~ 472 (480)
T PHA02790 465 EVYNNRTY 472 (480)
T ss_pred EEEECCCC
Confidence 77777654
No 432
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.87 E-value=28 Score=36.89 Aligned_cols=52 Identities=23% Similarity=0.389 Sum_probs=36.2
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee--cCCCCeEEEEEeC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE--YHKHPVTSIEWSP 381 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~--~h~~~I~~v~~sp 381 (479)
...+..++.+|+. .+|+-=...|.|.+-+....+ ....+. .|..+ -.++|.-
T Consensus 216 ~~~~~ki~VS~n~-~~laLyt~~G~i~~vs~D~~~----~lce~~~~~~~~p-~qm~Wcg 269 (829)
T KOG2280|consen 216 NSSVVKISVSPNR-RFLALYTETGKIWVVSIDLSQ----ILCEFNCTDHDPP-KQMAWCG 269 (829)
T ss_pred CceEEEEEEcCCc-ceEEEEecCCcEEEEecchhh----hhhccCCCCCCch-Hhceeec
Confidence 3567888999988 889999999999998877665 444444 23222 3666664
No 433
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.44 E-value=22 Score=40.02 Aligned_cols=141 Identities=16% Similarity=0.284 Sum_probs=80.0
Q ss_pred CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE--------CCCCCcEEEEEeCCCcEEEEEcC----CCCc----ee
Q 039302 254 CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW--------SPTESDVFASCSVDGNIAIWDTR----VGKS----AL 317 (479)
Q Consensus 254 ~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~--------sp~~~~~l~s~s~dg~I~iwD~~----~~~~----~~ 317 (479)
.|..+.+|+.++++.. ..+.+-...|..+.. -|.=+++|+.+. --.|.|+-+. +... ..
T Consensus 97 iDn~L~lWny~~~~e~----~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNEL----AEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred eCCeEEEEEcCCCCcc----ccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEEEEEeccccCcccccccc
Confidence 4789999999885542 234444444444432 222232333333 3345554332 2111 01
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC--------------------CceEEEee-cCCCCeEE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG--------------------DSVVAHFE-YHKHPVTS 376 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~--------------------~~~~~~~~-~h~~~I~~ 376 (479)
.++......|+++....+| .++++|- || .||.+-..... -+.+..+. .+..+|..
T Consensus 172 ~~i~~dg~~V~~I~~t~nG-RIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENG-RIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred eeeecCCceEEEEEeccCC-cEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 2223345678899877777 6666654 55 44443211100 01122333 57789999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+.... ...++.+-++.++|.+|++...
T Consensus 248 i~ID~-SR~IlY~lsek~~v~~Y~i~~~ 274 (1311)
T KOG1900|consen 248 ITIDN-SRNILYVLSEKGTVSAYDIGGN 274 (1311)
T ss_pred eEecc-ccceeeeeccCceEEEEEccCC
Confidence 99987 4489999999999999999874
No 434
>PRK10115 protease 2; Provisional
Probab=87.34 E-value=47 Score=35.87 Aligned_cols=202 Identities=5% Similarity=-0.037 Sum_probs=98.7
Q ss_pred cceeEEEEecCCCcEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
-.+..+.++|++..++.+...+| .|++.|+.+ +..+...-... . ..++|.+++
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~t---------------------g~~l~~~i~~~-~-~~~~w~~D~ 183 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLET---------------------GNWYPELLDNV-E-PSFVWANDS 183 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCC---------------------CCCCCccccCc-c-eEEEEeeCC
Confidence 34677889999965555444433 477888865 22111111111 1 469999998
Q ss_pred CCeEEEEeCC-----CeEEEEecCCCCccccCCCCcccCCCcEE-EEEECCCCCcEEEEEe--CCCcEEEEEcCCCCcee
Q 039302 246 PGRLVSGDCN-----SCIHLWEPASDATWNVDPNPFIGHAASVE-DLQWSPTESDVFASCS--VDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 246 ~~~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~-~l~~sp~~~~~l~s~s--~dg~I~iwD~~~~~~~~ 317 (479)
.+++++...+ ..|+.+++.+...... ..+........ .+..+.++..+++.++ .++.+.+++........
T Consensus 184 ~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~--lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~ 261 (686)
T PRK10115 184 WTFYYVRKHPVTLLPYQVWRHTIGTPASQDE--LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP 261 (686)
T ss_pred CEEEEEEecCCCCCCCEEEEEECCCChhHCe--EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc
Confidence 8555554422 3677888877522111 11222222222 3333446664444433 24578898854321111
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCC-C--eEEEEeCCCCCCCCceEEEeecC-C-CCeEEEEEeCCCCCEEEEEeC
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDD-G--TFSIHDLRLLKGGDSVVAHFEYH-K-HPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g--~i~iwDlr~~~~~~~~~~~~~~h-~-~~I~~v~~sp~~~~~las~s~ 392 (479)
..+..+...+..-..+..+ .+++....+ . .|...++.... ....+-.+ . ..|..+.+.. ..++++...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~-~ly~~tn~~~~~~~l~~~~~~~~~----~~~~l~~~~~~~~i~~~~~~~--~~l~~~~~~ 334 (686)
T PRK10115 262 FVFLPRRKDHEYSLDHYQH-RFYLRSNRHGKNFGLYRTRVRDEQ----QWEELIPPRENIMLEGFTLFT--DWLVVEERQ 334 (686)
T ss_pred eEEEECCCCCEEEEEeCCC-EEEEEEcCCCCCceEEEecCCCcc----cCeEEECCCCCCEEEEEEEEC--CEEEEEEEe
Confidence 2222222222211123223 333333222 2 34444444211 12333334 3 3688888873 367777777
Q ss_pred CCcEEEEECCC
Q 039302 393 DNQLTIWDLSL 403 (479)
Q Consensus 393 Dg~I~iwdl~~ 403 (479)
++.-.++-+..
T Consensus 335 ~g~~~l~~~~~ 345 (686)
T PRK10115 335 RGLTSLRQINR 345 (686)
T ss_pred CCEEEEEEEcC
Confidence 88766665543
No 435
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=86.43 E-value=14 Score=37.21 Aligned_cols=126 Identities=12% Similarity=0.165 Sum_probs=72.7
Q ss_pred CCCcEEecCCCCceEEEEeCCCCCC------eEEEEeCCCeEEEEecCCCCcccc--CCCCcccCCCcEEEEEECCCCCc
Q 039302 223 QSPLVKFGGHKDEGYAIDWNPVAPG------RLVSGDCNSCIHLWEPASDATWNV--DPNPFIGHAASVEDLQWSPTESD 294 (479)
Q Consensus 223 ~~~~~~~~~h~~~v~~l~~s~~~~~------~l~sg~~dg~I~lwd~~~~~~~~~--~~~~~~~h~~~V~~l~~sp~~~~ 294 (479)
++.+-.+..|..- -+.|.|.... .-+.|-.+..|.-.|++-.+.... ....+.+. ....+..-..+ .
T Consensus 500 GkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKdY~tK-n~Fss~~tTes-G- 574 (776)
T COG5167 500 GKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKDYKTK-NKFSSGMTTES-G- 574 (776)
T ss_pred ceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehhcccc-ccccccccccC-c-
Confidence 5556666655543 5667765421 334455566666666655442111 01111111 11222222222 3
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 295 VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
++|++|..|-|++||--..+ ....+.+-...|..|....+|..+||||- ..+.+-|++-
T Consensus 575 yIa~as~kGDirLyDRig~r-AKtalP~lG~aIk~idvta~Gk~ilaTCk--~yllL~d~~i 633 (776)
T COG5167 575 YIAAASRKGDIRLYDRIGKR-AKTALPGLGDAIKHIDVTANGKHILATCK--NYLLLTDVPI 633 (776)
T ss_pred eEEEecCCCceeeehhhcch-hhhcCcccccceeeeEeecCCcEEEEeec--ceEEEEeccc
Confidence 89999999999999954432 33345666778999999999966666653 5777888763
No 436
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.07 E-value=7.8 Score=38.98 Aligned_cols=77 Identities=18% Similarity=0.184 Sum_probs=51.3
Q ss_pred CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC---------CCCceeeEE-----------ecCCCCEEEEEEcCCC--C
Q 039302 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTR---------VGKSALMSF-----------KAHNADVNVISWNRLA--S 337 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~---------~~~~~~~~~-----------~~h~~~v~~l~~~p~~--~ 337 (479)
.-.|..+..++.|. .++-.+.+|.+.++=-+ .++ +.... ....-.+..++|+|+. .
T Consensus 103 ~feV~~vl~s~~GS-~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk-~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGS-HVALIGIKGLMVMELPKRWGKNSEFEDGK-STVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCCCc-eEEEecCCeeEEEEchhhcCccceecCCC-ceEEEEeecccceeeccCCceeeeeccccCCccCC
Confidence 45688899999999 67777778876665322 222 11111 1111235678999987 5
Q ss_pred cEEEEEeCCCeEEEEeCCCCC
Q 039302 338 CLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 338 ~~l~sgs~dg~i~iwDlr~~~ 358 (479)
..|+.-+.|..|++||+....
T Consensus 181 ~hL~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred ceEEEEecCcEEEEEecCCcc
Confidence 677777889999999998654
No 437
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=86.07 E-value=30 Score=32.43 Aligned_cols=164 Identities=13% Similarity=0.063 Sum_probs=98.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
...+.-.+-+..++++.+- -++ +..+.-++|+|+... .+|...-.-.. ..++-.|.
T Consensus 80 ~~~i~~~~l~~Dv~vse~y-vyv--ad~ssGL~IvDIS~P--------------------~sP~~~~~lnt-~gyaygv~ 135 (370)
T COG5276 80 LSVINARDLFADVRVSEEY-VYV--ADWSSGLRIVDISTP--------------------DSPTLIGFLNT-DGYAYGVY 135 (370)
T ss_pred EEEEehhhhhheeEecccE-EEE--EcCCCceEEEeccCC--------------------CCcceeccccC-CceEEEEE
Confidence 4555667788888988754 333 345556999999883 22222111111 14444555
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
-.|+ ++..+..+.-+.+.|+.+.....+ ...+......-..++.| |+ +-..+..|+-+.|-|+.....++..-.-
T Consensus 136 vsGn-~aYVadlddgfLivdvsdpssP~l-agrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~ 210 (370)
T COG5276 136 VSGN-YAYVADLDDGFLIVDVSDPSSPQL-AGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSY 210 (370)
T ss_pred ecCC-EEEEeeccCcEEEEECCCCCCcee-eeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEE
Confidence 5565 788888676777889877654332 12233334444677776 44 4455567888999999988665544322
Q ss_pred C-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 323 H-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 323 h-~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
. ...+.++..+++. -+++.. +--+.+-|....+
T Consensus 211 n~g~g~~sv~vsdnr-~y~vvy--~egvlivd~s~~s 244 (370)
T COG5276 211 NTGPGTYSVSVSDNR-AYLVVY--DEGVLIVDVSGPS 244 (370)
T ss_pred ecCCceEEEEecCCe-eEEEEc--ccceEEEecCCCC
Confidence 2 3378888888766 444443 2345666766655
No 438
>PHA03098 kelch-like protein; Provisional
Probab=85.62 E-value=42 Score=34.90 Aligned_cols=103 Identities=10% Similarity=0.144 Sum_probs=49.9
Q ss_pred eEEEEeCC------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC--------cEEEEEcCCC
Q 039302 248 RLVSGDCN------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--------NIAIWDTRVG 313 (479)
Q Consensus 248 ~l~sg~~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--------~I~iwD~~~~ 313 (479)
.++.|+.. ..+..||+.+ ..|.... .+.........+.. ++. +++.|+.++ .+.+||..+.
T Consensus 392 iYv~GG~~~~~~~~~~v~~yd~~t-~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 392 IYVIGGISKNDELLKTVECFSLNT-NKWSKGS-PLPISHYGGCAIYH--DGK-IYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred EEEECCcCCCCcccceEEEEeCCC-CeeeecC-CCCccccCceEEEE--CCE-EEEECCccCCCCCcccceEEEecCCCC
Confidence 56666632 3578899876 3444311 11111111112222 344 677776432 3888898875
Q ss_pred Cce-eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCC
Q 039302 314 KSA-LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLK 358 (479)
Q Consensus 314 ~~~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~ 358 (479)
+-. +............+.+ ++ .+++.||.+ ..|.+||..+..
T Consensus 467 ~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 467 KWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred ceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 311 1111111111122233 34 677777764 467888877654
No 439
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=85.29 E-value=48 Score=37.15 Aligned_cols=122 Identities=14% Similarity=0.104 Sum_probs=70.2
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
+-....+|.|.+++-.. | .|++ +..-.|.||+++.... ..++. | -.-+++-....
T Consensus 1091 l~~eE~KGtVsavceV~-G--~l~~-~~GqKI~v~~l~r~~~------------------ligVa-F--iD~~~yv~s~~ 1145 (1366)
T KOG1896|consen 1091 LYIEEQKGTVSAVCEVR-G--HLLS-SQGQKIIVRKLDRDSE------------------LIGVA-F--IDLPLYVHSMK 1145 (1366)
T ss_pred eehhhcccceEEEEEec-c--EEEE-ccCcEEEEEEeccCCc------------------ceeeE-E--eccceeEEehh
Confidence 33445678888887653 5 3445 4456799999965210 11111 1 12244444444
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCc-EEEEEeCCCcEEEEEcC
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESD-VFASCSVDGNIAIWDTR 311 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-~l~s~s~dg~I~iwD~~ 311 (479)
--++ +|+.|+--..|.+.-...... ......-....-.|.++.|--+|.+ .|+++..++.|++|-..
T Consensus 1146 ~vkn-lIl~gDV~ksisfl~fqeep~-rlsL~srd~~~l~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~ 1213 (1366)
T KOG1896|consen 1146 VVKN-LILAGDVMKSISFLGFQEEPY-RLSLLSRDFEPLNVYSTEFLVDGSNLSFLVSDADRNIHVYMYA 1213 (1366)
T ss_pred hhhh-heehhhhhhceEEEEEccCce-EEEEeecCCchhhceeeeeEEcCCeeEEEEEcCCCcEEEEEeC
Confidence 4454 888888777777766654222 1101111112335778888777664 57888889999998654
No 440
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.81 E-value=5.8 Score=35.85 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=44.8
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCceeeE------Ee-------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 290 PTESDVFASCSVDGNIAIWDTRVGKSALMS------FK-------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 290 p~~~~~l~s~s~dg~I~iwD~~~~~~~~~~------~~-------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
..+. ++++.+.+|.+++||+.+.+..+.. +. .....|..+.++.+| .-|++-+ +|..+.|+...
T Consensus 20 ~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecccc
Confidence 3455 7888899999999999987532111 11 345678888888777 5555544 47788888765
Q ss_pred CC
Q 039302 357 LK 358 (479)
Q Consensus 357 ~~ 358 (479)
..
T Consensus 97 ~~ 98 (219)
T PF07569_consen 97 GC 98 (219)
T ss_pred ce
Confidence 43
No 441
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.62 E-value=6.4 Score=35.60 Aligned_cols=68 Identities=13% Similarity=0.100 Sum_probs=46.7
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCce--EEE-ee-------cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSV--VAH-FE-------YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 334 p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~--~~~-~~-------~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
..+ .+|++-+.+|.+++||+.+.+..-.+ +.. +. .....|.++.++.++ .-|++-+ +|..+.|+...
T Consensus 20 ~~~-~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNG-SYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred eCC-CEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEecccc
Confidence 334 67888899999999999987742111 000 11 355678999999754 6666655 57889998876
Q ss_pred C
Q 039302 404 E 404 (479)
Q Consensus 404 ~ 404 (479)
.
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 5
No 442
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.48 E-value=23 Score=39.85 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=89.9
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC-----
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN----- 242 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s----- 242 (479)
|...-..+-+.|.-.+.-+ +.|..+.+|++++. .....+.+-...|..+..-
T Consensus 77 ~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~---------------------~e~~~~d~~shtIl~V~LvkPkpg 133 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESD---------------------NELAEYDGLSHTILKVGLVKPKPG 133 (1311)
T ss_pred CcceeeeeccchhhcceEE--EeCCeEEEEEcCCC---------------------CccccccchhhhheeeeeecCCCC
Confidence 4444555556664433333 46788999999882 2223333333344444332
Q ss_pred ---CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcc------cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC--
Q 039302 243 ---PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFI------GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR-- 311 (479)
Q Consensus 243 ---~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~------~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~-- 311 (479)
|.-...|+.+. --.|.|+-+.-...... ...+. .....|+|+....+|+ +|.+|- || .||.+-
T Consensus 134 vFv~~IqhlLvvaT-~~ei~ilgV~~~~~~~~-~~~f~~~~~i~~dg~~V~~I~~t~nGR-IF~~G~-dg--~lyEl~Yq 207 (1311)
T KOG1900|consen 134 VFVPEIQHLLVVAT-PVEIVILGVSFDEFTGE-LSIFNTSFKISVDGVSVNCITYTENGR-IFFAGR-DG--NLYELVYQ 207 (1311)
T ss_pred cchhhhheeEEecc-cceEEEEEEEeccccCc-ccccccceeeecCCceEEEEEeccCCc-EEEeec-CC--CEEEEEEe
Confidence 22221333333 44566654432111000 11122 2256799999888887 666655 55 444431
Q ss_pred --CC-------Cc------------eeeEEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 312 --VG-------KS------------ALMSFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 312 --~~-------~~------------~~~~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
.+ +. .+.++. .+..+|..|...... .++.+-+..|+|.+||+....
T Consensus 208 ~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 208 AEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSR-NILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred ccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecccc-ceeeeeccCceEEEEEccCCC
Confidence 11 00 112233 567789999999877 899999999999999998743
No 443
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=83.64 E-value=57 Score=33.57 Aligned_cols=98 Identities=16% Similarity=0.206 Sum_probs=58.6
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEE-----------------EeCCCeEEEEeCCCC
Q 039302 295 VFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLAS-----------------GSDDGTFSIHDLRLL 357 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s-----------------gs~dg~i~iwDlr~~ 357 (479)
+++.++.+|.+...|.++++ .+-..... ...++.+| + .+++. ...+|.|.-.|+.++
T Consensus 303 ~V~~g~~~G~l~ald~~tG~-~~W~~~~~---~~~~~~~~-~-~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG 376 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGK-LISARPEV---EQPMAYDP-G-LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG 376 (488)
T ss_pred EEEEECCCceEEEEECCCCc-EeeEeEee---ccccccCC-c-eEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence 57778889999999999986 33333211 11233344 2 22221 124578888888888
Q ss_pred CCCCceEEEeecC--C------CCe--EEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 358 KGGDSVVAHFEYH--K------HPV--TSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 358 ~~~~~~~~~~~~h--~------~~I--~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+ .+-..... . .+. ..+.. .+.+|+.++.||.|+.+|..+++
T Consensus 377 ~----~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~ 427 (488)
T cd00216 377 K----VVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGK 427 (488)
T ss_pred c----EeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCc
Confidence 7 34443321 0 111 12222 23678888899999999998874
No 444
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=82.93 E-value=36 Score=32.02 Aligned_cols=79 Identities=14% Similarity=0.231 Sum_probs=46.3
Q ss_pred CCCceEEEEeCCCCCCeEEEEe------CCCeEEEEecCCCCccccCCCCc-ccCCCcEEEEEECCCC-CcEEEEEe-CC
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGD------CNSCIHLWEPASDATWNVDPNPF-IGHAASVEDLQWSPTE-SDVFASCS-VD 302 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~------~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~-~~~l~s~s-~d 302 (479)
-.+.|++|.|..... .++.|. ....+..||..+. .|....... ..-.++|+.+.+...+ .++++.|. .+
T Consensus 35 i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~-~w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~ 112 (281)
T PF12768_consen 35 ISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQ-TWSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRSAN 112 (281)
T ss_pred ceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCC-eeeecCCcccccCCCcEEEEEeeccCCceEEEeceecC
Confidence 356899999986554 666664 4567889998763 443211111 2234788888875433 33554544 33
Q ss_pred --CcEEEEEcCC
Q 039302 303 --GNIAIWDTRV 312 (479)
Q Consensus 303 --g~I~iwD~~~ 312 (479)
..|..||=..
T Consensus 113 g~~~l~~~dGs~ 124 (281)
T PF12768_consen 113 GSTFLMKYDGSS 124 (281)
T ss_pred CCceEEEEcCCc
Confidence 3466665443
No 445
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=81.82 E-value=18 Score=36.05 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=54.6
Q ss_pred cEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCc-EEEEEECC--------------
Q 039302 226 LVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAAS-VEDLQWSP-------------- 290 (479)
Q Consensus 226 ~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~-V~~l~~sp-------------- 290 (479)
...+......+.++..+|.+. +.|+.+.-|+|.|+|+.++... +.++|-.+. +.-+....
T Consensus 300 r~~l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~vv----rmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~ 374 (415)
T PF14655_consen 300 RFGLPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGIVV----RMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKS 374 (415)
T ss_pred EEeeccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCChhh----hhhccCccceEEEEEeecccccccccccccCC
Confidence 344555666899999999987 8888888899999999875431 223332211 11111000
Q ss_pred --C-CCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 291 --T-ESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 291 --~-~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
. ...+++-+-.-|.|-||.++.+. .+..+
T Consensus 375 ~~~~~l~LvIyaprRg~lEvW~~~~g~-Rv~a~ 406 (415)
T PF14655_consen 375 SSRFALFLVIYAPRRGILEVWSMRQGP-RVAAF 406 (415)
T ss_pred CCcceEEEEEEeccCCeEEEEecCCCC-EEEEE
Confidence 0 11134445678899999999885 44444
No 446
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=80.12 E-value=20 Score=35.53 Aligned_cols=163 Identities=12% Similarity=0.060 Sum_probs=92.6
Q ss_pred CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC-CC----CEE-EEEEcCCCCcEEEEEeCCCeEEEE
Q 039302 279 HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH-NA----DVN-VISWNRLASCLLASGSDDGTFSIH 352 (479)
Q Consensus 279 h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h-~~----~v~-~l~~~p~~~~~l~sgs~dg~i~iw 352 (479)
-...|..+-..|+++ .+..-+. ..+.++++.+..-...++... .+ .|+ .+..-. |+.-|+++..||.|.-|
T Consensus 219 ~~~~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQW 295 (733)
T COG4590 219 PFSDVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQW 295 (733)
T ss_pred CccchHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeee
Confidence 345678888999999 4444443 678888877653211122111 11 122 112122 33667888889988766
Q ss_pred -eCCCCCC-CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCc
Q 039302 353 -DLRLLKG-GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQ 430 (479)
Q Consensus 353 -Dlr~~~~-~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 430 (479)
|.|.... .-..++.++-...++.-+.-. +..+-|++-+..|++.++.-...+ .
T Consensus 296 Fdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~------------------------~ 350 (733)
T COG4590 296 FDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEK------------------------L 350 (733)
T ss_pred eeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCc------------------------c
Confidence 6665442 111233333333444333322 234678888888888877655442 2
Q ss_pred eEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeeccC
Q 039302 431 LLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNIQ 471 (479)
Q Consensus 431 l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~~ 471 (479)
+++... -..+.-++++|.+. .+.+-..++++++++.|-.
T Consensus 351 lL~~~~-~~~~~~~~~Sp~~~-~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 351 LLFERA-YQAPQLVAMSPNQA-YLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred eehhhh-hcCcceeeeCcccc-hheeecCCceEEEEecCCC
Confidence 333322 12567789999986 5566666778999887753
No 447
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=80.05 E-value=1e+02 Score=34.19 Aligned_cols=140 Identities=15% Similarity=0.118 Sum_probs=73.3
Q ss_pred eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCc-EEEEEe-----------CCCcEEEEEcCCCCceeeEEecCC
Q 039302 257 CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESD-VFASCS-----------VDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 257 ~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~-~l~s~s-----------~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
.|++.|..++............-...|.++.|+..+.. ++++|. .+|.++.|++-.....+.-+....
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 36666665543322111111122345667777665553 333332 234466666544332222221111
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee--cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE--YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~--~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
-+-...+..|..+ ++++| ....+++||+-+.+ +++... .-...|++++|.- ..++.|..-..|.++-.+
T Consensus 934 ~~~~v~Ai~~f~~-~~Lag-vG~~l~~YdlG~K~----lLRk~e~k~~p~~Is~iqt~~---~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 934 IPGPVGAICPFQG-RVLAG-VGRFLRLYDLGKKK----LLRKCELKFIPNRISSIQTYG---ARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred CCccceEEeccCC-EEEEe-cccEEEEeeCChHH----HHhhhhhccCceEEEEEeecc---eEEEEeeccceEEEEEEe
Confidence 1223345667774 44443 34689999998776 444332 2356788888863 677777776677777666
Q ss_pred CCC
Q 039302 403 LEK 405 (479)
Q Consensus 403 ~~~ 405 (479)
...
T Consensus 1005 ~~~ 1007 (1205)
T KOG1898|consen 1005 RED 1007 (1205)
T ss_pred cCC
Confidence 553
No 448
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=78.42 E-value=32 Score=34.38 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=52.2
Q ss_pred CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC----EEEEEEc--------------CCCCcEEE
Q 039302 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD----VNVISWN--------------RLASCLLA 341 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~----v~~l~~~--------------p~~~~~l~ 341 (479)
...+.+|+.+|.+. +.|+...=|.|.++|+..+. .+..+++..+. +....-. ...-.+++
T Consensus 307 ~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~-vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI-VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh-hhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 34578999999987 77777677999999998874 33333332221 0000000 00112445
Q ss_pred EEeCCCeEEEEeCCCCCCCCceEEEeec
Q 039302 342 SGSDDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 342 sgs~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
-...-|.|-||.++++. .+..+..
T Consensus 385 yaprRg~lEvW~~~~g~----Rv~a~~v 408 (415)
T PF14655_consen 385 YAPRRGILEVWSMRQGP----RVAAFNV 408 (415)
T ss_pred EeccCCeEEEEecCCCC----EEEEEEe
Confidence 56678999999999887 5666553
No 449
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=78.24 E-value=1e+02 Score=33.13 Aligned_cols=105 Identities=14% Similarity=0.205 Sum_probs=58.2
Q ss_pred EEEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 328 NVISWNRLASCLLASGSDDG-----TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg-----~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
..++|-|+| ..++|-+.|| .|.++....... +.+- .-.+....+..++|+-.. ..++ .+..+.|.+|-..
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrH-Gef~-lr~~~dEk~~~~~wn~~s-~vla-v~~~n~~~lwttk 324 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRH-GEFD-LRVGCDEKAFLENWNLLS-TVLA-VAEGNLLKLWTTK 324 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCccc-CCcc-ccCCchhhhhhhhhhHHH-HHHH-HhhcceEEEEEcc
Confidence 348999999 7888876555 355554333221 1111 111234456778887633 3443 3457789999876
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
+-.- .+.. -..-..+.=+.|||.....+.-.+.+.
T Consensus 325 NyhW-----------------------YLK~-e~~ip~~s~vkwhpe~~nTl~f~d~~~ 359 (1243)
T COG5290 325 NYHW-----------------------YLKV-ERQIPGISYVKWHPEEKNTLLFRDGER 359 (1243)
T ss_pred ceEE-----------------------EEEE-eecCCCcceeeeccccCcEEEEecCCe
Confidence 6421 1111 111124666889988766665555554
No 450
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=76.89 E-value=1.2e+02 Score=33.24 Aligned_cols=169 Identities=13% Similarity=0.174 Sum_probs=97.0
Q ss_pred CCCCceEEEEeC---CC--CCCeEEEEeCCCeEEEEecCCCCc--------cccCCC---Ccc---cCCCcEEEEEECCC
Q 039302 231 GHKDEGYAIDWN---PV--APGRLVSGDCNSCIHLWEPASDAT--------WNVDPN---PFI---GHAASVEDLQWSPT 291 (479)
Q Consensus 231 ~h~~~v~~l~~s---~~--~~~~l~sg~~dg~I~lwd~~~~~~--------~~~~~~---~~~---~h~~~V~~l~~sp~ 291 (479)
.-..+|..|.|. .. ....++..-....+.|+...-... ..+... .+. .-..+..+++|+|.
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~ 156 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPW 156 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccC
Confidence 345688888888 21 111344444466777877321111 000001 111 11346789999999
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCc---eeeEE-ecCC----------CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 292 ESDVFASCSVDGNIAIWDTRVGKS---ALMSF-KAHN----------ADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 292 ~~~~l~s~s~dg~I~iwD~~~~~~---~~~~~-~~h~----------~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
....||.....|...|||+..... ..... ..+. ..-..|.|.++. ..|+.++ ...+.++|+.+.
T Consensus 157 ~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~-~~lLv~~-r~~l~~~d~~~~ 234 (765)
T PF10214_consen 157 DQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDS-NRLLVCN-RSKLMLIDFESN 234 (765)
T ss_pred ccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCC-CEEEEEc-CCceEEEECCCC
Confidence 888999999999999999922110 11111 1111 223478898776 4555554 467899999877
Q ss_pred CCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 358 KGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 358 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
... .+.........|..+.-+|.+..+++.-. ...|...++...
T Consensus 235 ~~~--~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~~ 278 (765)
T PF10214_consen 235 WQT--EYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKSS 278 (765)
T ss_pred Ccc--chhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccCC
Confidence 631 11222334567999999886444444433 256777777764
No 451
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=76.79 E-value=40 Score=27.64 Aligned_cols=114 Identities=15% Similarity=0.193 Sum_probs=68.2
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc---CCCCcccCCCcEEEEEECC----CCCcEEEEEeCCCcEEEEEcC
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV---DPNPFIGHAASVEDLQWSP----TESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~---~~~~~~~h~~~V~~l~~sp----~~~~~l~s~s~dg~I~iwD~~ 311 (479)
-.|....+ .|+.++.-|+|.|++......... ....+..-...|++|+--+ ++...|+.|+ ...|..||+.
T Consensus 4 GkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVE 81 (136)
T ss_pred EEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcc
Confidence 34555666 788888899999999865432110 0112233456677776433 2344677666 5679999999
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCC---CcEEEEEeCCCeEEEEeCCCC
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLA---SCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~---~~~l~sgs~dg~i~iwDlr~~ 357 (479)
.... ..++.-...|+++.+-.-+ ..++++| .+..|.-||..-.
T Consensus 82 ~N~d--~Fyke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~ 127 (136)
T PF14781_consen 82 NNSD--LFYKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGN 127 (136)
T ss_pred cCch--hhhhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCc
Confidence 8742 2234445778888874322 2455554 4567777776543
No 452
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=76.56 E-value=41 Score=27.60 Aligned_cols=110 Identities=14% Similarity=0.148 Sum_probs=64.7
Q ss_pred EEEECCCCCcEEEEEeCCCcEEEEEcCCCCc------eeeEEecCCCCEEEEEEcCC----CCcEEEEEeCCCeEEEEeC
Q 039302 285 DLQWSPTESDVFASCSVDGNIAIWDTRVGKS------ALMSFKAHNADVNVISWNRL----ASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 285 ~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~------~~~~~~~h~~~v~~l~~~p~----~~~~l~sgs~dg~i~iwDl 354 (479)
.-.|....+ .|+.++.-|+|.|++...... .-..+..-...|++|+-.+- +...|+.|+. ..+..||+
T Consensus 3 iGkfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 3 IGKFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEEeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 346777777 788888899999998764421 11223334556777754432 2356777665 57899999
Q ss_pred CCCCCCCceEEEeecCCCCeEEEEEeCC---CCCEEEEEeCCCcEEEEECC
Q 039302 355 RLLKGGDSVVAHFEYHKHPVTSIEWSPH---EGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 355 r~~~~~~~~~~~~~~h~~~I~~v~~sp~---~~~~las~s~Dg~I~iwdl~ 402 (479)
..... +.. +.-...|++|.+-.. ...+++.| .+..|.-||..
T Consensus 81 ~~N~d----~Fy-ke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~ 125 (136)
T PF14781_consen 81 ENNSD----LFY-KEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYE 125 (136)
T ss_pred ccCch----hhh-hhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCC
Confidence 87762 322 223467777766321 22344444 45566655544
No 453
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.25 E-value=14 Score=22.86 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=23.1
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec
Q 039302 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 334 p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
|++..++++.-.++.|.++|..+.. .+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~----~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK----VIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe----EEEEEEC
Confidence 4554566667778999999997766 5666654
No 454
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=76.25 E-value=11 Score=23.15 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=25.0
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCC--ceEEEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADT--GHVQVW 197 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~d--g~V~iw 197 (479)
++....+.-....|+|+|..++.+...+ |.-.||
T Consensus 3 ~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 3 QLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp EES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4455666778899999998888888777 777776
No 455
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=76.21 E-value=1.3e+02 Score=33.22 Aligned_cols=116 Identities=17% Similarity=0.080 Sum_probs=64.6
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCC--CCc---EEEEEeCCCeEEEEeC-CC
Q 039302 283 VEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRL--ASC---LLASGSDDGTFSIHDL-RL 356 (479)
Q Consensus 283 V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~--~~~---~l~sgs~dg~i~iwDl-r~ 356 (479)
++....+.+.. .++.++.++.+...++....-...........|.|+.++|- +++ +++.|..+..+.+.-. ..
T Consensus 490 ~ti~~~~~n~s-qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd 568 (1096)
T KOG1897|consen 490 ITIGVVSANAS-QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD 568 (1096)
T ss_pred eEEEEEeecce-EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC
Confidence 33333333333 56666667777777777654111112334567999999975 334 8999988876554432 22
Q ss_pred CCCCCceEEEe--ec--CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 357 LKGGDSVVAHF--EY--HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 357 ~~~~~~~~~~~--~~--h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.. .+... .+ -...|.-..+--+ ..+|.++..||.+..|-+...
T Consensus 569 ~~----~~~~~~l~~~~iPRSIl~~~~e~d-~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 569 LI----LITHEQLSGEIIPRSILLTTFEGD-IHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred cc----eeeeeccCCCccchheeeEEeecc-ceEEEEEcCCceEEEEEEEcc
Confidence 22 22221 11 1122333334332 478999999999987766554
No 456
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=75.84 E-value=64 Score=34.56 Aligned_cols=102 Identities=18% Similarity=0.350 Sum_probs=59.1
Q ss_pred EEEEECCCCCcEEEEEeCCCc-----EEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 284 EDLQWSPTESDVFASCSVDGN-----IAIWDTRVGKS-ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 284 ~~l~~sp~~~~~l~s~s~dg~-----I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
..+.|-|+|. .+++-+.||. |.++.-+..+. -...-.+....+..++|+-.. ..++. +..+.|++|-..+.
T Consensus 250 ~~LSWkpqgS-~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s-~vlav-~~~n~~~lwttkNy 326 (1243)
T COG5290 250 HQLSWKPQGS-KYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS-TVLAV-AEGNLLKLWTTKNY 326 (1243)
T ss_pred hccccccCCc-eeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH-HHHHH-hhcceEEEEEccce
Confidence 4589999998 8888775543 44443221110 000012223456778888765 44444 45578999988776
Q ss_pred CCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 358 KGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 358 ~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
. ......-.-..|.-|.|+|...+.|.-.+.
T Consensus 327 h----WYLK~e~~ip~~s~vkwhpe~~nTl~f~d~ 357 (1243)
T COG5290 327 H----WYLKVERQIPGISYVKWHPEEKNTLLFRDG 357 (1243)
T ss_pred E----EEEEEeecCCCcceeeeccccCcEEEEecC
Confidence 5 233333334567778999976565555443
No 457
>PRK13684 Ycf48-like protein; Provisional
Probab=74.92 E-value=84 Score=30.44 Aligned_cols=156 Identities=11% Similarity=0.011 Sum_probs=82.4
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
...++++.+.+++. ++++| ..|.+..-.-..+..|... ...-...++++.+.++++ .+++ +..|.+++=....
T Consensus 172 ~g~~~~i~~~~~g~-~v~~g-~~G~i~~s~~~gg~tW~~~---~~~~~~~l~~i~~~~~g~-~~~v-g~~G~~~~~s~d~ 244 (334)
T PRK13684 172 AGVVRNLRRSPDGK-YVAVS-SRGNFYSTWEPGQTAWTPH---QRNSSRRLQSMGFQPDGN-LWML-ARGGQIRFNDPDD 244 (334)
T ss_pred cceEEEEEECCCCe-EEEEe-CCceEEEEcCCCCCeEEEe---eCCCcccceeeeEcCCCC-EEEE-ecCCEEEEccCCC
Confidence 34788999998764 55444 4666553211122334321 122346789999999887 5555 4567765422333
Q ss_pred CCceeeEEec----CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 313 GKSALMSFKA----HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 313 ~~~~~~~~~~----h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
+.. -..... -...+..+.+.+.+ .++++ +.+|.|.. -...++. ...+.....-....+.+.|...+ .. .
T Consensus 245 G~s-W~~~~~~~~~~~~~l~~v~~~~~~-~~~~~-G~~G~v~~-S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~-~~-~ 317 (334)
T PRK13684 245 LES-WSKPIIPEITNGYGYLDLAYRTPG-EIWAG-GGNGTLLV-SKDGGKT-WEKDPVGEEVPSNFYKIVFLDPE-KG-F 317 (334)
T ss_pred CCc-cccccCCccccccceeeEEEcCCC-CEEEE-cCCCeEEE-eCCCCCC-CeECCcCCCCCcceEEEEEeCCC-ce-E
Confidence 321 111111 12357888999876 55554 45675543 3332221 11111111222357778877533 44 4
Q ss_pred EEeCCCcEEEEECC
Q 039302 389 VSSADNQLTIWDLS 402 (479)
Q Consensus 389 s~s~Dg~I~iwdl~ 402 (479)
..+..|.|.-|+-.
T Consensus 318 ~~G~~G~il~~~~~ 331 (334)
T PRK13684 318 VLGQRGVLLRYVGS 331 (334)
T ss_pred EECCCceEEEecCC
Confidence 45678888877643
No 458
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.64 E-value=67 Score=29.17 Aligned_cols=152 Identities=14% Similarity=0.111 Sum_probs=83.4
Q ss_pred CCcEEEEEECCCCCcEEEEEeCC---------CcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEE
Q 039302 280 AASVEDLQWSPTESDVFASCSVD---------GNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFS 350 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s~s~d---------g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~ 350 (479)
....++-..+|+|+ +++-.-.| |.++.|-.... +..+...-.--|.++|+.+...+..+-+.+-.|.
T Consensus 108 knR~NDgkvdP~Gr-yy~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~ 183 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR-YYGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD 183 (310)
T ss_pred hcccccCccCCCCc-eeeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence 44667778899998 43322111 23333322211 1111212223477899988877778888888888
Q ss_pred EEe--CCCCCCC-CceEEEeecC---CCC-eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCC
Q 039302 351 IHD--LRLLKGG-DSVVAHFEYH---KHP-VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNA 423 (479)
Q Consensus 351 iwD--lr~~~~~-~~~~~~~~~h---~~~-I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~ 423 (479)
-|| ..++... ...+..++.. ... .-.++..- .+.++++.-..++|...|..+++
T Consensus 184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~dp~tGK------------------ 244 (310)
T KOG4499|consen 184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVDPTTGK------------------ 244 (310)
T ss_pred eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEECCCCCc------------------
Confidence 888 3333211 1123333220 111 12233343 45788888888999999999885
Q ss_pred CCCCCCceEEeecCCCCeeeEEEeCC-CCcEEEEEcCC
Q 039302 424 PEDLPPQLLFIHQGQKDLKELHWHTQ-VPGMIVSTAAD 460 (479)
Q Consensus 424 ~~~~p~~l~~~h~g~~~V~~v~w~p~-~~~ll~s~~~d 460 (479)
.|+...-....|++++|--. -..+.++++.+
T Consensus 245 ------~L~eiklPt~qitsccFgGkn~d~~yvT~aa~ 276 (310)
T KOG4499|consen 245 ------ILLEIKLPTPQITSCCFGGKNLDILYVTTAAK 276 (310)
T ss_pred ------EEEEEEcCCCceEEEEecCCCccEEEEEehhc
Confidence 23333333356999999643 33455555544
No 459
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=73.90 E-value=15 Score=22.68 Aligned_cols=32 Identities=16% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 290 PTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 290 p~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|+++.++++...+++|.++|..+.. .+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~-~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK-VIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe-EEEEEEC
Confidence 4566577777789999999997764 4444443
No 460
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=72.72 E-value=95 Score=30.03 Aligned_cols=110 Identities=13% Similarity=0.194 Sum_probs=57.6
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc-ccc--CCCCcccCCCcEEEEEECCC---CCcEEEEEeCC------
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT-WNV--DPNPFIGHAASVEDLQWSPT---ESDVFASCSVD------ 302 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~-~~~--~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~d------ 302 (479)
.-++|+|.|++. |+++...|.|++++. .+.. ..+ ..............++++|+ +..++++.+..
T Consensus 3 ~P~~~a~~pdG~--l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 3 NPRSMAFLPDGR--LLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp SEEEEEEETTSC--EEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred CceEEEEeCCCc--EEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 357899999974 555677999999993 3222 111 11223344567899999995 23244444421
Q ss_pred --CcEEEEEcCCCC------cee-eEEec---CCCCEEEEEEcCCCCcEEEEEeCCCe
Q 039302 303 --GNIAIWDTRVGK------SAL-MSFKA---HNADVNVISWNRLASCLLASGSDDGT 348 (479)
Q Consensus 303 --g~I~iwD~~~~~------~~~-~~~~~---h~~~v~~l~~~p~~~~~l~sgs~dg~ 348 (479)
..|.-|...... ..+ ..+.. .......|.|.|++ .++++.++.+.
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~ 136 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGN 136 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCC
Confidence 123333333220 011 11122 23456779999999 66666655443
No 461
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=72.57 E-value=19 Score=21.98 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=21.6
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCC--CeEEEE
Q 039302 322 AHNADVNVISWNRLASCLLASGSDD--GTFSIH 352 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~d--g~i~iw 352 (479)
.....-....|+|+|..++.++..+ |...||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3445677889999997777777777 776666
No 462
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=72.31 E-value=42 Score=36.08 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=83.8
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE--------EcCCCCceeeE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW--------DTRVGKSALMS 319 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw--------D~~~~~~~~~~ 319 (479)
.+..|+.++.|.|+.-..+.........+......+.++.+++. .+..|..||++-.+ |.. +-..
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss~---Slgagl~dgt~a~y~rap~gSwd~e----p~~~ 621 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSSG---SLGAGLIDGTLAVYGRAPSGSWDGE----PNIS 621 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhcccc---ccccCccCCccccccCCCCCCCCCC----Cccc
Confidence 68889999999999876332222222334444567777777754 35556666666554 333 1222
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
+.....+|.+.++..+ ++.|+.+|+|.++...+....+.... ...|...|+.+...-+ .++++-.....++++
T Consensus 622 ~~~g~lPvrsla~~ed----~~was~gG~V~vi~~tt~~~~~~lea-hqee~~~Vthm~~~~~--gVwvafasG~~~rlf 694 (925)
T KOG3522|consen 622 IPTGSLPVRSLAFQED----FVWASEGGCVHVIPSTTFIRSWDLEA-HQEEAHSVTHMLYLDN--GVWVAFASGDEERLF 694 (925)
T ss_pred cccCCccccchhhhhc----eeeeecCCceEEEechhccccchhHH-HHhhcceEEEEEeeCC--ceEEEEcCCCEEEEe
Confidence 3334567788777642 35567889999999887763221111 2235668899888753 344443334455555
Q ss_pred ECCCC
Q 039302 400 DLSLE 404 (479)
Q Consensus 400 dl~~~ 404 (479)
+..+.
T Consensus 695 htetl 699 (925)
T KOG3522|consen 695 HTETL 699 (925)
T ss_pred ccccc
Confidence 55544
No 463
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=72.06 E-value=1.1e+02 Score=30.29 Aligned_cols=202 Identities=14% Similarity=0.140 Sum_probs=105.9
Q ss_pred EEEeCCCCC--CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE----CCCCCcE-EEEEeC-C---CcEE
Q 039302 238 AIDWNPVAP--GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW----SPTESDV-FASCSV-D---GNIA 306 (479)
Q Consensus 238 ~l~~s~~~~--~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~----sp~~~~~-l~s~s~-d---g~I~ 306 (479)
+|-.+|..+ .+++....++-+.+||+....... +. .+.++.+.. .-.++.. |+.++. + .+|+
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~Gk~lq~-----~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~ 130 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDGKELQS-----LP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLR 130 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS-EEEE-----E---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCCcEEEe-----ec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEE
Confidence 344454433 278888889999999996533221 11 123333322 1123322 444443 2 4699
Q ss_pred EEEcCCCCceeeEEec-------CCCCEEEEEE--cC-CCCcEEEEEeCCCeEEEEeCCCCCC---CCceEEEeecCCCC
Q 039302 307 IWDTRVGKSALMSFKA-------HNADVNVISW--NR-LASCLLASGSDDGTFSIHDLRLLKG---GDSVVAHFEYHKHP 373 (479)
Q Consensus 307 iwD~~~~~~~~~~~~~-------h~~~v~~l~~--~p-~~~~~l~sgs~dg~i~iwDlr~~~~---~~~~~~~~~~h~~~ 373 (479)
+|-+......+..+.. ....+..+|+ ++ .+..+++....+|.+..|-+..... ...+++.|.. ...
T Consensus 131 ~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ 209 (381)
T PF02333_consen 131 LFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQ 209 (381)
T ss_dssp EEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-
T ss_pred EEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCc
Confidence 9988643223333221 1234666776 34 3445777788899888887753221 1246777775 447
Q ss_pred eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC---CCCeeeEEEeC--
Q 039302 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG---QKDLKELHWHT-- 448 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g---~~~V~~v~w~p-- 448 (479)
+-.+...... ..|..+=++--|.-|+...... ..++++..-.+ ...|-.|+.-.
T Consensus 210 ~EGCVVDDe~-g~LYvgEE~~GIW~y~Aep~~~--------------------~~~~~v~~~~g~~l~aDvEGlaly~~~ 268 (381)
T PF02333_consen 210 PEGCVVDDET-GRLYVGEEDVGIWRYDAEPEGG--------------------NDRTLVASADGDGLVADVEGLALYYGS 268 (381)
T ss_dssp EEEEEEETTT-TEEEEEETTTEEEEEESSCCC---------------------S--EEEEEBSSSSB-S-EEEEEEEE-C
T ss_pred ceEEEEeccc-CCEEEecCccEEEEEecCCCCC--------------------CcceeeecccccccccCccceEEEecC
Confidence 8888888754 6888888886666666554321 11244433222 13577777753
Q ss_pred CC-CcEEEEEcCCC-ceEEeee
Q 039302 449 QV-PGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 449 ~~-~~ll~s~~~dg-i~iw~~~ 468 (479)
.+ .+||+|.-.++ +.||+-.
T Consensus 269 ~g~gYLivSsQG~~sf~Vy~r~ 290 (381)
T PF02333_consen 269 DGKGYLIVSSQGDNSFAVYDRE 290 (381)
T ss_dssp CC-EEEEEEEGGGTEEEEEESS
T ss_pred CCCeEEEEEcCCCCeEEEEecC
Confidence 33 35666665555 8888753
No 464
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.94 E-value=58 Score=36.74 Aligned_cols=34 Identities=9% Similarity=0.105 Sum_probs=27.7
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRS 201 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~ 201 (479)
+-......++|.|.. +++|.+..+|.|++|-...
T Consensus 33 G~~~~~~~~afD~~q-~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 33 GFPSTPSALAFDPTQ-GLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCCCCcceeecccc-ceEEEEEecccEEEecccc
Confidence 444566778899987 8999999999999998665
No 465
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=71.42 E-value=1.1e+02 Score=30.40 Aligned_cols=149 Identities=11% Similarity=0.144 Sum_probs=76.9
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEE-EEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIH-LWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~-lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.+.+..++++. +++.|. .|.+. -|+-.. ..|.. . -......+..+.|.+++. ++++ +..|.+.. ....+.
T Consensus 241 f~~v~~~~dG~-~~~vg~-~G~~~~s~d~G~-~~W~~--~-~~~~~~~l~~v~~~~dg~-l~l~-g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGD-YVAVSS-RGNFYLTWEPGQ-PYWQP--H-NRASARRIQNMGWRADGG-LWLL-TRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCC-EEEEEC-CccEEEecCCCC-cceEE--e-cCCCccceeeeeEcCCCC-EEEE-eCCceEEE-ecCCCC
Confidence 45566677764 555554 55543 344311 11221 1 112245688999999887 5544 45666544 333322
Q ss_pred c----eeeEEec--CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 315 S----ALMSFKA--HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 315 ~----~~~~~~~--h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
. ....... ....+..+.|.+++ ..+++ +..|.+.... ..++. ......-..-....+.+.|.+. ....
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~-~~~a~-G~~G~v~~s~-D~G~t-W~~~~~~~~~~~~ly~v~f~~~--~~g~ 385 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKK-EAWAA-GGSGILLRST-DGGKS-WKRDKGADNIAANLYSVKFFDD--KKGF 385 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCC-cEEEE-ECCCcEEEeC-CCCcc-eeEccccCCCCcceeEEEEcCC--CceE
Confidence 1 1111111 22358889999877 55555 5667666543 22221 1111111222456889998763 3444
Q ss_pred EEeCCCcEEEE
Q 039302 389 VSSADNQLTIW 399 (479)
Q Consensus 389 s~s~Dg~I~iw 399 (479)
..+.+|.|.-|
T Consensus 386 ~~G~~G~il~~ 396 (398)
T PLN00033 386 VLGNDGVLLRY 396 (398)
T ss_pred EEeCCcEEEEe
Confidence 55678877655
No 466
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=70.28 E-value=31 Score=36.09 Aligned_cols=68 Identities=16% Similarity=0.305 Sum_probs=39.7
Q ss_pred CeEEEEeCCCeEEEEecCC----CCccccC----------CCCcc--------cCCCcEEEEEECC---CCCcEEEEEeC
Q 039302 247 GRLVSGDCNSCIHLWEPAS----DATWNVD----------PNPFI--------GHAASVEDLQWSP---TESDVFASCSV 301 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~----~~~~~~~----------~~~~~--------~h~~~V~~l~~sp---~~~~~l~s~s~ 301 (479)
..|+.+..||.+....... +..+... ...+. .....+..++++. ++..++++.+.
T Consensus 159 ~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~ 238 (547)
T PF11715_consen 159 ANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSR 238 (547)
T ss_dssp SBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEET
T ss_pred CEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeC
Confidence 4888888899988887764 1111100 01111 1123456666666 23448999999
Q ss_pred CCcEEEEEcCCCC
Q 039302 302 DGNIAIWDTRVGK 314 (479)
Q Consensus 302 dg~I~iwD~~~~~ 314 (479)
|++||+||+.++.
T Consensus 239 D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 239 DHTLRIWSLETGQ 251 (547)
T ss_dssp TSEEEEEETTTTC
T ss_pred CCeEEEEECCCCe
Confidence 9999999999986
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=69.38 E-value=29 Score=36.28 Aligned_cols=69 Identities=16% Similarity=0.140 Sum_probs=40.2
Q ss_pred EEEEEeCCCcEEEEEcCC---CCceeeE--Ee--------------------cCCCCEEEEEEcC---CCCcEEEEEeCC
Q 039302 295 VFASCSVDGNIAIWDTRV---GKSALMS--FK--------------------AHNADVNVISWNR---LASCLLASGSDD 346 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~---~~~~~~~--~~--------------------~h~~~v~~l~~~p---~~~~~l~sgs~d 346 (479)
.|+.+..||.+....... ....... +. .....+..++.+. ++..+|++-+.|
T Consensus 160 ~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D 239 (547)
T PF11715_consen 160 NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLSRD 239 (547)
T ss_dssp BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEETT
T ss_pred EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEeCC
Confidence 677777888888877664 1100000 00 0123455566655 233799999999
Q ss_pred CeEEEEeCCCCCCCCceEEEe
Q 039302 347 GTFSIHDLRLLKGGDSVVAHF 367 (479)
Q Consensus 347 g~i~iwDlr~~~~~~~~~~~~ 367 (479)
+.+|+||+.+.. ++.+.
T Consensus 240 ~~LRiW~l~t~~----~~~~~ 256 (547)
T PF11715_consen 240 HTLRIWSLETGQ----CLATI 256 (547)
T ss_dssp SEEEEEETTTTC----EEEEE
T ss_pred CeEEEEECCCCe----EEEEe
Confidence 999999999988 55544
No 468
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=68.45 E-value=1.3e+02 Score=29.96 Aligned_cols=111 Identities=8% Similarity=0.019 Sum_probs=61.7
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc---CCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV---DPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~---~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
...++++.|.+++. .++++ ..|.+.. ....+..+.. .......-...+.++.|.+++. ++.++..|.+....
T Consensus 280 ~~~l~~v~~~~dg~-l~l~g-~~G~l~~-S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~--~~a~G~~G~v~~s~ 354 (398)
T PLN00033 280 ARRIQNMGWRADGG-LWLLT-RGGGLYV-SKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKE--AWAAGGSGILLRST 354 (398)
T ss_pred ccceeeeeEcCCCC-EEEEe-CCceEEE-ecCCCCcccccceeecccCCCCcceEEEEEcCCCc--EEEEECCCcEEEeC
Confidence 34688999988875 55444 5677543 3333332211 0011111224589999998776 45555678776653
Q ss_pred cCCCCceeeEE---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEE
Q 039302 310 TRVGKSALMSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIH 352 (479)
Q Consensus 310 ~~~~~~~~~~~---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iw 352 (479)
..++ .-... ..-...++.+.|.+.+ ..+++ +.+|.|.-|
T Consensus 355 -D~G~-tW~~~~~~~~~~~~ly~v~f~~~~-~g~~~-G~~G~il~~ 396 (398)
T PLN00033 355 -DGGK-SWKRDKGADNIAANLYSVKFFDDK-KGFVL-GNDGVLLRY 396 (398)
T ss_pred -CCCc-ceeEccccCCCCcceeEEEEcCCC-ceEEE-eCCcEEEEe
Confidence 3333 11111 2224568899987766 55555 567877654
No 469
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=67.26 E-value=1.2e+02 Score=29.05 Aligned_cols=62 Identities=8% Similarity=0.025 Sum_probs=32.1
Q ss_pred EEEEEeC-----CCcEEEEEcCCCCce-eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe----EEEEeCCCCC
Q 039302 295 VFASCSV-----DGNIAIWDTRVGKSA-LMSFKAHNADVNVISWNRLASCLLASGSDDGT----FSIHDLRLLK 358 (479)
Q Consensus 295 ~l~s~s~-----dg~I~iwD~~~~~~~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~----i~iwDlr~~~ 358 (479)
+++.|+. ...+..||+.+.+-. +..+... ......+..-.+ .+.+.|+.++. +.+||+.+..
T Consensus 126 iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-~r~~~~~~~~~~-~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 126 LYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGE-PRVQPVCVKLQN-ELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCC-CCCcceEEEECC-EEEEEcCCCCccccceEEEecCCCe
Confidence 7777764 235888898865311 1111111 111111112234 78888887643 5688887654
No 470
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=67.02 E-value=1.2e+02 Score=29.13 Aligned_cols=217 Identities=14% Similarity=0.165 Sum_probs=110.3
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCe------EEEEecCCCCc-----cccCCCCccc--------CCCcEEEEEECCCCCc
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSC------IHLWEPASDAT-----WNVDPNPFIG--------HAASVEDLQWSPTESD 294 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~------I~lwd~~~~~~-----~~~~~~~~~~--------h~~~V~~l~~sp~~~~ 294 (479)
+...+|.+.+.+. .+++-+.+|. +..+++..... .......+.. -..-..+|++.+++.
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~- 97 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS- 97 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC-
Confidence 4677899987554 7777777888 76666654111 0000011111 112456889966666
Q ss_pred EEEEEeCC------CcEEEEEcCCCCceeeEE---------------ecCCCCEEEEEEcCCCCcEEEEEeC-----CC-
Q 039302 295 VFASCSVD------GNIAIWDTRVGKSALMSF---------------KAHNADVNVISWNRLASCLLASGSD-----DG- 347 (479)
Q Consensus 295 ~l~s~s~d------g~I~iwD~~~~~~~~~~~---------------~~h~~~v~~l~~~p~~~~~l~sgs~-----dg- 347 (479)
++++.-.+ -.|..++.. +. ....+ ...+..+-+|+++|++ ..|+++.. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~-~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG-~~l~~~~E~~l~~d~~ 174 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GR-VIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDG-RTLFAAMESPLKQDGP 174 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-Cc-ccceEccccccccccCccccccCCCCeEEEEECCCC-CEEEEEECccccCCCc
Confidence 66666556 678888866 32 11111 1245678999999999 54444322 22
Q ss_pred -e-------EEE--EeCCCCCC-CCceEEEeec-----CCCCeEEEEEeCCCCCEEEEEe-----CCCcEEEEECCCCCC
Q 039302 348 -T-------FSI--HDLRLLKG-GDSVVAHFEY-----HKHPVTSIEWSPHEGSTLAVSS-----ADNQLTIWDLSLEKD 406 (479)
Q Consensus 348 -~-------i~i--wDlr~~~~-~~~~~~~~~~-----h~~~I~~v~~sp~~~~~las~s-----~Dg~I~iwdl~~~~~ 406 (479)
. ++| ||..+... .......+.. ....|+.+.+-+++ .+|+.=- ....++|+-+.....
T Consensus 175 ~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLvLER~~~~~~~~~~ri~~v~l~~a 253 (326)
T PF13449_consen 175 RANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLVLERDFSPGTGNYKRIYRVDLSDA 253 (326)
T ss_pred ccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEEEEccCCCCccceEEEEEEEcccc
Confidence 1 444 45444221 1112222322 34678899999865 4444321 234556655543321
Q ss_pred --hHHHHHHhhhcccccCCCCCCCCceEEeec--C--CCCeeeEEEeC--CCCcEEEEEcCCCc
Q 039302 407 --EEEEAEFKAKTREQVNAPEDLPPQLLFIHQ--G--QKDLKELHWHT--QVPGMIVSTAADGF 462 (479)
Q Consensus 407 --~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~--g--~~~V~~v~w~p--~~~~ll~s~~~dgi 462 (479)
........ ........+++++--. + ...+-.++|.| .+...|+-.++|++
T Consensus 254 t~~~~~~~l~------~~~~~~~~k~ll~d~~~~g~~~dn~EGma~~p~~~g~~~l~lvsDnNF 311 (326)
T PF13449_consen 254 TDVPGIESLE------GADIKPVKKELLFDLSPLGLPIDNFEGMAVGPRLDGRRTLYLVSDNNF 311 (326)
T ss_pred cccccccccc------cccccccccccccccccccCccCceeeEEEeeccCCCEEEEEEECCCC
Confidence 10000000 0001112223332111 1 34588899987 56666777777765
No 471
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=65.75 E-value=1.5e+02 Score=29.68 Aligned_cols=32 Identities=19% Similarity=0.445 Sum_probs=25.2
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 372 HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
..|.++...+.. +.|++.+.++.|.+|++...
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~~ 221 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGPG 221 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-SS
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeCC
Confidence 349999999865 89999999999999999863
No 472
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=65.69 E-value=1.3e+02 Score=28.76 Aligned_cols=200 Identities=15% Similarity=0.118 Sum_probs=87.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCC-CCceEEEEe
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGH-KDEGYAIDW 241 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h-~~~v~~l~~ 241 (479)
...+-...+..|.|.... +-+|.|. .|. |+........ .++... ...- .-..+++.|
T Consensus 11 v~l~t~~~l~dV~F~d~~-~G~~VG~-~g~--il~T~DGG~t-----------------W~~~~~~~~~~~~~~l~~I~f 69 (302)
T PF14870_consen 11 VSLPTDKPLLDVAFVDPN-HGWAVGA-YGT--ILKTTDGGKT-----------------WQPVSLDLDNPFDYHLNSISF 69 (302)
T ss_dssp EE-S-SS-EEEEEESSSS--EEEEET-TTE--EEEESSTTSS------------------EE-----S-----EEEEEEE
T ss_pred eecCCCCceEEEEEecCC-EEEEEec-CCE--EEEECCCCcc-----------------ccccccCCCccceeeEEEEEe
Confidence 344556689999999555 5666654 454 3433331111 111110 0000 123567777
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce-eeEE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-LMSF 320 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-~~~~ 320 (479)
... . .+++|. .|. .+.-...+..|....... .-.+....+.....+. .++ .+..|. ||-...+... ....
T Consensus 70 ~~~-~-g~ivG~-~g~-ll~T~DgG~tW~~v~l~~-~lpgs~~~i~~l~~~~-~~l-~~~~G~--iy~T~DgG~tW~~~~ 140 (302)
T PF14870_consen 70 DGN-E-GWIVGE-PGL-LLHTTDGGKTWERVPLSS-KLPGSPFGITALGDGS-AEL-AGDRGA--IYRTTDGGKTWQAVV 140 (302)
T ss_dssp ETT-E-EEEEEE-TTE-EEEESSTTSS-EE----T-T-SS-EEEEEEEETTE-EEE-EETT----EEEESSTTSSEEEEE
T ss_pred cCC-c-eEEEcC-Cce-EEEecCCCCCcEEeecCC-CCCCCeeEEEEcCCCc-EEE-EcCCCc--EEEeCCCCCCeeEcc
Confidence 643 3 455554 443 344444555555321110 1122333344333333 333 344454 3444433221 1222
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
..-...++.+.-++++ .++++++.-..+.-||--... -....+.-...|.+|.|.|++ .+.+.+ ..|.|++=+
T Consensus 141 ~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~----w~~~~r~~~~riq~~gf~~~~-~lw~~~-~Gg~~~~s~ 213 (302)
T PF14870_consen 141 SETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTT----WQPHNRNSSRRIQSMGFSPDG-NLWMLA-RGGQIQFSD 213 (302)
T ss_dssp -S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-----EEEE--SSS-EEEEEE-TTS--EEEEE-TTTEEEEEE
T ss_pred cCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCcc----ceEEccCccceehhceecCCC-CEEEEe-CCcEEEEcc
Confidence 3344678888889998 788887665566678755432 222333356889999999964 554443 888888876
No 473
>COG5308 NUP170 Nuclear pore complex subunit [Intracellular trafficking and secretion]
Probab=65.12 E-value=74 Score=34.62 Aligned_cols=78 Identities=10% Similarity=0.142 Sum_probs=53.8
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCC--------------------ceEEEeecCCCCeEEEEEeCCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGD--------------------SVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~--------------------~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
.-.|+|+.-+.+| ..+.+|-.| +.+|.+.-..... +....+..|...|..++....
T Consensus 181 GinV~civs~e~G-rIFf~g~~d--~nvyEl~Y~~sd~wfnskcskiclTkS~l~sllPs~~~~~ipgetI~Ql~vDqs- 256 (1263)
T COG5308 181 GINVRCIVSEEDG-RIFFGGEND--PNVYELVYKSSDSWFNSKCSKICLTKSILSSLLPSFFSFGIPGETIKQLAVDQS- 256 (1263)
T ss_pred CceeEEEEeccCC-cEEEecCCC--CCeEEEEEeccchhhhhhhhccCCcHHHHHhhcccccccCCcccchhheeeccc-
Confidence 4567888777767 888888776 7777764221100 112223457788999999874
Q ss_pred CCEEEEEeCCCcEEEEECCCCC
Q 039302 384 GSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..+|.+-+.-..|+-|.+....
T Consensus 257 Rg~ly~Lr~kS~Vray~itkng 278 (1263)
T COG5308 257 RGLLYVLRKKSAVRAYSITKNG 278 (1263)
T ss_pred ccceeeecccceeeeEeeeccc
Confidence 4789999999999999987654
No 474
>PLN02193 nitrile-specifier protein
Probab=64.97 E-value=1.7e+02 Score=29.93 Aligned_cols=102 Identities=10% Similarity=0.081 Sum_probs=50.4
Q ss_pred eEEEEeCCC-----eEEEEecCCCCccccCCCC--cccCCCcEEEEEECCCCCcEEEEEeCC----CcEEEEEcCCCCce
Q 039302 248 RLVSGDCNS-----CIHLWEPASDATWNVDPNP--FIGHAASVEDLQWSPTESDVFASCSVD----GNIAIWDTRVGKSA 316 (479)
Q Consensus 248 ~l~sg~~dg-----~I~lwd~~~~~~~~~~~~~--~~~h~~~V~~l~~sp~~~~~l~s~s~d----g~I~iwD~~~~~~~ 316 (479)
+++.|+.++ .+..||+.+ ..|...... ..........+.+ ++. +++.++.+ ..+.+||+.+..-
T Consensus 281 iYv~GG~~~~~~~~~~~~yd~~t-~~W~~~~~~~~~~~~R~~~~~~~~--~gk-iyviGG~~g~~~~dv~~yD~~t~~W- 355 (470)
T PLN02193 281 VYVFGGVSATARLKTLDSYNIVD-KKWFHCSTPGDSFSIRGGAGLEVV--QGK-VWVVYGFNGCEVDDVHYYDPVQDKW- 355 (470)
T ss_pred EEEECCCCCCCCcceEEEEECCC-CEEEeCCCCCCCCCCCCCcEEEEE--CCc-EEEEECCCCCccCceEEEECCCCEE-
Confidence 566666543 467788765 344321110 0011111112222 345 67777655 4588999887631
Q ss_pred eeEEec------CCCCEEEEEEcCCCCcEEEEEeCC--------------CeEEEEeCCCCC
Q 039302 317 LMSFKA------HNADVNVISWNRLASCLLASGSDD--------------GTFSIHDLRLLK 358 (479)
Q Consensus 317 ~~~~~~------h~~~v~~l~~~p~~~~~l~sgs~d--------------g~i~iwDlr~~~ 358 (479)
..+.. ......++.+ .+ .+++.|+.. ..+.+||+.+..
T Consensus 356 -~~~~~~g~~P~~R~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 356 -TQVETFGVRPSERSVFASAAV--GK-HIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred -EEeccCCCCCCCcceeEEEEE--CC-EEEEECCccCCccccccCccceeccEEEEEcCcCE
Confidence 11211 1111222333 23 788888853 247888887664
No 475
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=64.79 E-value=1.5e+02 Score=29.27 Aligned_cols=147 Identities=17% Similarity=0.129 Sum_probs=82.1
Q ss_pred CeEEEEecCCCCccccCC----CCcccCCCcEEEEEE--CC-CCCcEEEEEeCCCcEEEEEcCCC---C---ceeeEEec
Q 039302 256 SCIHLWEPASDATWNVDP----NPFIGHAASVEDLQW--SP-TESDVFASCSVDGNIAIWDTRVG---K---SALMSFKA 322 (479)
Q Consensus 256 g~I~lwd~~~~~~~~~~~----~~~~~h~~~V~~l~~--sp-~~~~~l~s~s~dg~I~iwD~~~~---~---~~~~~~~~ 322 (479)
.+|++|.+.......... .++..-...++.+|+ +| ++..+++....+|.+..|-+... . ..+..+..
T Consensus 127 n~l~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~ 206 (381)
T PF02333_consen 127 NSLRLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV 206 (381)
T ss_dssp -EEEEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-
T ss_pred CeEEEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC
Confidence 479999885321111000 112122234777776 44 45656777788999888877532 1 13444543
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-CceEEEeec--CCCCeEEEEEeC--CCC-CEEEEEeCCCcE
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG-DSVVAHFEY--HKHPVTSIEWSP--HEG-STLAVSSADNQL 396 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~-~~~~~~~~~--h~~~I~~v~~sp--~~~-~~las~s~Dg~I 396 (479)
...+..|...... ..|..|-.+.-|.-|+..-.... ...+....+ ....|-.|+.-. ++. .+|+|.=.+++.
T Consensus 207 -~sQ~EGCVVDDe~-g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf 284 (381)
T PF02333_consen 207 -GSQPEGCVVDDET-GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSF 284 (381)
T ss_dssp -SS-EEEEEEETTT-TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEE
T ss_pred -CCcceEEEEeccc-CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeE
Confidence 4478888888877 68888889988888887643321 122333322 345677777743 333 445555558899
Q ss_pred EEEECCCC
Q 039302 397 TIWDLSLE 404 (479)
Q Consensus 397 ~iwdl~~~ 404 (479)
.||+....
T Consensus 285 ~Vy~r~~~ 292 (381)
T PF02333_consen 285 AVYDREGP 292 (381)
T ss_dssp EEEESSTT
T ss_pred EEEecCCC
Confidence 99998754
No 476
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=62.12 E-value=1.1e+02 Score=27.39 Aligned_cols=126 Identities=10% Similarity=0.118 Sum_probs=66.1
Q ss_pred cEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC------cEEE---EECCCCCChH
Q 039302 338 CLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN------QLTI---WDLSLEKDEE 408 (479)
Q Consensus 338 ~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg------~I~i---wdl~~~~~~~ 408 (479)
.+|++ ...+.|.+|++.... ..++..|.. -+.|..+.++..+ .+|+|-=.++ .+++ |.........
T Consensus 30 ~Lfva-~~g~~Vev~~l~~~~--~~~~~~F~T-v~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~ 104 (215)
T PF14761_consen 30 ALFVA-ASGCKVEVYDLEQEE--CPLLCTFST-VGRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP 104 (215)
T ss_pred eEEEE-cCCCEEEEEEcccCC--CceeEEEcc-hhheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCc
Confidence 34343 556789999999333 346777775 4789999999965 8888864432 3444 4443221100
Q ss_pred HHHHHhhhccc-ccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 409 EEAEFKAKTRE-QVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 409 ~~~~~~~~~~~-~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
--....++... ..........+.+-.-- ...+.+++-.|....+++ ++.+.+.+|.+..-
T Consensus 105 v~vRiaG~~v~~~~~~~~~~qleiiElPl-~~~p~ciaCC~~tG~LlV-g~~~~l~lf~l~~~ 165 (215)
T PF14761_consen 105 VRVRIAGHRVTPSFNESSKDQLEIIELPL-SEPPLCIACCPVTGNLLV-GCGNKLVLFTLKYQ 165 (215)
T ss_pred EEEEEcccccccCCCCccccceEEEEecC-CCCCCEEEecCCCCCEEE-EcCCEEEEEEEEEE
Confidence 00000000000 00000111122222222 346888998887654555 55566888887654
No 477
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=61.34 E-value=1.6e+02 Score=28.40 Aligned_cols=165 Identities=12% Similarity=0.102 Sum_probs=82.5
Q ss_pred CcceeEEEEecCCCcEEEEEeCCce------EEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGH------VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~------V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
-+.+..|.+.+.+..++|. +++|. +..+++................... ...+.+. ..-....-+|++.
T Consensus 19 ~GGlSgl~~~~~~~~~~av-SD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~G~~~---~~~~~D~Egi~~~ 93 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAV-SDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLR-DPDGQPF---PKNGLDPEGIAVP 93 (326)
T ss_pred cCcEeeEEEeCCCCEEEEE-ECCCCCCCCCcEEEEEeeccCCCccceEeccceecc-CCCCCcC---CcCCCChhHeEEe
Confidence 4788899999765455554 88888 6666665411111000000000000 0001111 0011133467775
Q ss_pred CCCCCeEEEEeCC------CeEEEEecCCCCccc---cCCC--------CcccCCCcEEEEEECCCCCcEEEEEeC----
Q 039302 243 PVAPGRLVSGDCN------SCIHLWEPASDATWN---VDPN--------PFIGHAASVEDLQWSPTESDVFASCSV---- 301 (479)
Q Consensus 243 ~~~~~~l~sg~~d------g~I~lwd~~~~~~~~---~~~~--------~~~~h~~~V~~l~~sp~~~~~l~s~s~---- 301 (479)
+++. ++++.-.+ ..|..++.. +.... ++.. .-...+.....|+++|++. .|.++..
T Consensus 94 ~~g~-~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~-~l~~~~E~~l~ 170 (326)
T PF13449_consen 94 PDGS-FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGR-TLFAAMESPLK 170 (326)
T ss_pred cCCC-EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCC-EEEEEECcccc
Confidence 6654 66666556 678888865 22211 1111 1123456799999999998 4444432
Q ss_pred -CC--c-------EEEEE--cCCCCceeeE--E--ec-----CCCCEEEEEEcCCCCcEEEE
Q 039302 302 -DG--N-------IAIWD--TRVGKSALMS--F--KA-----HNADVNVISWNRLASCLLAS 342 (479)
Q Consensus 302 -dg--~-------I~iwD--~~~~~~~~~~--~--~~-----h~~~v~~l~~~p~~~~~l~s 342 (479)
|+ . ++|+. ..+...+... + .. ....|..+.+-+++ .+|+.
T Consensus 171 ~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLvL 231 (326)
T PF13449_consen 171 QDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLVL 231 (326)
T ss_pred CCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEEE
Confidence 22 1 45554 4432112222 2 21 35678889999988 55543
No 478
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=61.15 E-value=1.5e+02 Score=28.15 Aligned_cols=121 Identities=12% Similarity=0.133 Sum_probs=71.8
Q ss_pred EEEEEECCCCCcEEEEEeCCCcEEEEEcC------CCCceeeEEec-----CCCCEEEEEEcCCC-----------CcEE
Q 039302 283 VEDLQWSPTESDVFASCSVDGNIAIWDTR------VGKSALMSFKA-----HNADVNVISWNRLA-----------SCLL 340 (479)
Q Consensus 283 V~~l~~sp~~~~~l~s~s~dg~I~iwD~~------~~~~~~~~~~~-----h~~~v~~l~~~p~~-----------~~~l 340 (479)
-+.|+++|.+. +-++....+...+||.. ..+..+..+.. .....+.+.|+... ...+
T Consensus 25 ~WGia~~p~~~-~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRPGGP-FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecCCCC-EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 46799999987 77888888999999997 22222333331 22456778887543 1236
Q ss_pred EEEeCCCeEEEEeCCCCCCC-CceEEEee-cCCCCe-EEEEEeCC--CCCEEEEEeCCCcEEEEECCCC
Q 039302 341 ASGSDDGTFSIHDLRLLKGG-DSVVAHFE-YHKHPV-TSIEWSPH--EGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 341 ~sgs~dg~i~iwDlr~~~~~-~~~~~~~~-~h~~~I-~~v~~sp~--~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+.+++||+|.=|...-.... ...+..+. .....| ..+++... +..+.++--..++|.|+|-+..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~ 172 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFR 172 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccc
Confidence 77899999999985332210 00122222 112333 34555533 2234444446889999987654
No 479
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=57.70 E-value=2.6e+02 Score=29.78 Aligned_cols=227 Identities=11% Similarity=0.132 Sum_probs=109.8
Q ss_pred CceeEEE-EecCCcceeEEEEecCC--CcEEEEE-eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC
Q 039302 158 TPILQLR-KVAHQGCVNRIRAMSQN--PHICASW-ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK 233 (479)
Q Consensus 158 ~p~~~~~-~~~H~~~V~~v~~~p~~--~~~lat~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 233 (479)
.|++... .+.-+.-|.|+...... ..+.+.| .+...-++-.+........... . . ........++ -.
T Consensus 59 TPKLiwsypi~pt~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~----~--~--~e~~~~~~~k-l~ 129 (670)
T PF10395_consen 59 TPKLIWSYPISPTTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGT----V--N--SETTNEFELK-LD 129 (670)
T ss_pred CcceeEeeccCcCceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccc----c--C--ccccceEEEE-cc
Confidence 5555432 34555667777765543 2344444 3334345444443200000000 0 0 0112223333 25
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCC------cEEEEEECCCCCcEEEEEeC-C---C
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA------SVEDLQWSPTESDVFASCSV-D---G 303 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~------~V~~l~~sp~~~~~l~s~s~-d---g 303 (479)
..|-++.+..++. .+++.-.+|.|.+||........+. ..-..+.. -|.....- ++..++++.+. + -
T Consensus 130 ~kvv~Ik~~~~~~-~I~vvl~nG~i~~~d~~~~~l~~~~-~l~~~~~~~v~ys~fv~~~~~~-~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 130 DKVVGIKFSSDGK-IIYVVLENGSIQIYDFSENSLEKVP-QLKLKSSINVSYSKFVNDFELE-NGKDLLLTVSQLSNSKL 206 (670)
T ss_pred cceEEEEEecCCC-EEEEEEcCCcEEEEecccccccccc-ccccccccceehhhhhcccccc-cCCceEEEEEEcCCCcE
Confidence 6889999998887 8999999999999999332221111 11111222 22222211 22234444333 2 2
Q ss_pred cEEEEEcCCCCceeeEEe---cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC----C--CCe
Q 039302 304 NIAIWDTRVGKSALMSFK---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH----K--HPV 374 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~---~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h----~--~~I 374 (479)
..+++.+......+..+. .+........|.-..+.+..- .++.|.+|++...+ ...++.-. . ..+
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l--~~~~i~~ysip~f~----~~~tI~l~~ii~~~~~~~ 280 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL--SKKTISSYSIPNFQ----IQKTISLPSIIDKESDDL 280 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE--eCCEEEEEEcCCce----EEEEEEechhhccccccc
Confidence 467777732222333332 222233333343333244333 67899999998876 44444321 1 123
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 375 TSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 375 ~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.++.- |...++|++ .++.|++.|+....
T Consensus 281 vSl~~-~s~nRvLLs--~~nkIyLld~~~~s 308 (670)
T PF10395_consen 281 VSLKP-PSPNRVLLS--VNNKIYLLDLKFES 308 (670)
T ss_pred eEeec-CCCCeEEEE--cCCEEEEEeehhhh
Confidence 33321 212244443 36789999998764
No 480
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=56.21 E-value=3.4e+02 Score=30.52 Aligned_cols=111 Identities=11% Similarity=0.132 Sum_probs=63.8
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
+..-++.+|... ++++|- ...+++|++...+... ...+..-...|..+++.- . .+++|..--.++++-.+...
T Consensus 935 ~~~v~Ai~~f~~-~~Lagv-G~~l~~YdlG~K~lLR--k~e~k~~p~~Is~iqt~~--~-RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 935 PGPVGAICPFQG-RVLAGV-GRFLRLYDLGKKKLLR--KCELKFIPNRISSIQTYG--A-RIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred CccceEEeccCC-EEEEec-ccEEEEeeCChHHHHh--hhhhccCceEEEEEeecc--e-EEEEeeccceEEEEEEecCC
Confidence 444566777775 777665 4699999996644322 122222356788888763 3 57777665566666555543
Q ss_pred ceeeEEe--cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 315 SALMSFK--AHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 315 ~~~~~~~--~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
..+..+. .-...|+++.+-..+ .+|.+..-|.+.+-.+
T Consensus 1008 n~l~~fadD~~pR~Vt~~~~lD~~--tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1008 NQLIVFADDPVPRHVTALELLDYD--TVAGADRFGNIAVVRI 1047 (1205)
T ss_pred CeEEEEeCCCccceeeEEEEecCC--ceeeccccCcEEEEEC
Confidence 3444442 223446666555433 4566655565555433
No 481
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=55.16 E-value=60 Score=32.38 Aligned_cols=168 Identities=14% Similarity=0.100 Sum_probs=92.1
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe-cCC-CCceE-EEEeC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF-GGH-KDEGY-AIDWN 242 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h-~~~v~-~l~~s 242 (479)
..-...|..+-..|++..+.+- +. ..+.|+++.+..-... .+... .+. ...|+ .+..-
T Consensus 217 ~~~~~~v~qllL~Pdg~~LYv~-~g-~~~~v~~L~~r~l~~r-----------------kl~~dspg~~~~~Vte~l~lL 277 (733)
T COG4590 217 SVPFSDVSQLLLTPDGKTLYVR-TG-SELVVALLDKRSLQIR-----------------KLVDDSPGDSRHQVTEQLYLL 277 (733)
T ss_pred CCCccchHhhEECCCCCEEEEe-cC-CeEEEEeecccccchh-----------------hhhhcCCCchHHHHHHHHHHH
Confidence 3445678888999999544333 22 6789999877322111 11100 110 01121 11112
Q ss_pred CCCCCeEEEEeCCCeEEEE-ecCCCCccccC-CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 243 PVAPGRLVSGDCNSCIHLW-EPASDATWNVD-PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lw-d~~~~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
.-+. -|+.++.||-|.-| |.+.+...... .+.+.-...++.-+.-..+ +..|++-+..|++.++.....+ .+...
T Consensus 278 ~Gg~-SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~-rkgF~~l~~~G~L~~f~st~~~-~lL~~ 354 (733)
T COG4590 278 SGGF-SLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETN-RKGFYSLYRNGTLQSFYSTSEK-LLLFE 354 (733)
T ss_pred hCce-eEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccccc-cceEEEEcCCCceeeeecccCc-ceehh
Confidence 2233 68888889998887 55443331110 1112212233433332222 3378888999999988766543 33222
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
.. -..+..++++|.+ .+|++- +.|.|+++.+.+..
T Consensus 355 ~~-~~~~~~~~~Sp~~-~~Ll~e-~~gki~~~~l~Nr~ 389 (733)
T COG4590 355 RA-YQAPQLVAMSPNQ-AYLLSE-DQGKIRLAQLENRN 389 (733)
T ss_pred hh-hcCcceeeeCccc-chheee-cCCceEEEEecCCC
Confidence 22 2356788999998 666653 55789999988766
No 482
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=54.81 E-value=86 Score=29.01 Aligned_cols=75 Identities=9% Similarity=-0.006 Sum_probs=46.3
Q ss_pred ecCCcceeEEEEecCC------CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 166 VAHQGCVNRIRAMSQN------PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~------~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
..+...|+|+...+.. ...++.|.++|.|+|.|-.. ...+..+.-..-++.-.
T Consensus 173 l~~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~a---------------------f~il~~~~lpsvPv~i~ 231 (257)
T PF14779_consen 173 LKRQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQA---------------------FTILKQVQLPSVPVFIS 231 (257)
T ss_pred cccCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchh---------------------heeEEEEecCCCceEEE
Confidence 3456778888877643 46788899999999999876 22233333222233211
Q ss_pred EeC-CC-CCCeEEEEeCCCeEEEE
Q 039302 240 DWN-PV-APGRLVSGDCNSCIHLW 261 (479)
Q Consensus 240 ~~s-~~-~~~~l~sg~~dg~I~lw 261 (479)
+.. -+ ...+|+.++.||.|++.
T Consensus 232 ~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 232 VSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred EEeeeeccceEEEEEeCCCEEEEE
Confidence 111 11 23388889999998764
No 483
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=54.43 E-value=2.4e+02 Score=30.96 Aligned_cols=134 Identities=14% Similarity=0.211 Sum_probs=0.0
Q ss_pred ceeEEEEec------CCCcEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-----c
Q 039302 171 CVNRIRAMS------QNPHICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-----E 235 (479)
Q Consensus 171 ~V~~v~~~p------~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~ 235 (479)
.++.+.|.+ ..+.++++.+..+ .|.-|.+......+......................+..... .
T Consensus 182 ~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~~ 261 (753)
T PF11635_consen 182 QLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNKR 261 (753)
T ss_pred cceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCCe
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccC----CCCc-------ccCCCcEEE----EEECCCCCcEEEEEe
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVD----PNPF-------IGHAASVED----LQWSPTESDVFASCS 300 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~----~~~~-------~~h~~~V~~----l~~sp~~~~~l~s~s 300 (479)
|.++.-...+. .++..-.||+|.++|..+.+..... ...- .|-.-+... ++|||++. .++.-.
T Consensus 262 V~si~~~~~~~-~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c-~~v~~~ 339 (753)
T PF11635_consen 262 VVSITSPELDI-VVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMC-SLVQID 339 (753)
T ss_pred EEEEEecccCc-EEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccc-eEEEEe
Q ss_pred CCCcEE
Q 039302 301 VDGNIA 306 (479)
Q Consensus 301 ~dg~I~ 306 (479)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
No 484
>PLN02153 epithiospecifier protein
Probab=54.09 E-value=2.1e+02 Score=27.59 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=13.2
Q ss_pred EEEEEeCC-----CcEEEEEcCCC
Q 039302 295 VFASCSVD-----GNIAIWDTRVG 313 (479)
Q Consensus 295 ~l~s~s~d-----g~I~iwD~~~~ 313 (479)
+++.|+.+ ..+.+||+.+.
T Consensus 88 iyv~GG~~~~~~~~~v~~yd~~t~ 111 (341)
T PLN02153 88 LYIFGGRDEKREFSDFYSYDTVKN 111 (341)
T ss_pred EEEECCCCCCCccCcEEEEECCCC
Confidence 77777753 35778888765
No 485
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=53.46 E-value=2e+02 Score=29.89 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=54.0
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcE-------EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASV-------EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V-------~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|+.++.++.|+-.|..+++. |..... .......+ ..++.. +. .++.++.|+.|.-.|.++++. +-.
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~-~~~~~~~~~~~~~~~rg~av~--~~-~v~v~t~dg~l~ALDa~TGk~-~W~ 145 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPK-LPDDVIPVMCCDVVNRGVALY--DG-KVFFGTLDARLVALDAKTGKV-VWS 145 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCC-CCcccccccccccccccceEE--CC-EEEEEcCCCEEEEEECCCCCE-Eee
Confidence 677777788888888877644 221111 00000010 111222 23 566778899999999999863 322
Q ss_pred Eec--CCCCEEEEEEcC--CCCcEEEEEe------CCCeEEEEeCCCCC
Q 039302 320 FKA--HNADVNVISWNR--LASCLLASGS------DDGTFSIHDLRLLK 358 (479)
Q Consensus 320 ~~~--h~~~v~~l~~~p--~~~~~l~sgs------~dg~i~iwDlr~~~ 358 (479)
... +... ..+.-.| .+ ..++++. .+|.|.-+|+++++
T Consensus 146 ~~~~~~~~~-~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~ 192 (527)
T TIGR03075 146 KKNGDYKAG-YTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGK 192 (527)
T ss_pred ccccccccc-ccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCc
Confidence 221 1100 0111111 12 2344443 26889999998877
No 486
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=52.54 E-value=1.3e+02 Score=27.82 Aligned_cols=60 Identities=17% Similarity=0.241 Sum_probs=41.7
Q ss_pred CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE---EEEeCCCCCEEEEEeCCCcEEEE
Q 039302 335 LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS---IEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 335 ~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~---v~~sp~~~~~las~s~Dg~I~iw 399 (479)
+....|+.|..+|.|.|.|-.... .+..+.-..-++.= -.|.. -...|+.++.||.|++-
T Consensus 193 ~a~scLViGTE~~~i~iLd~~af~----il~~~~lpsvPv~i~~~G~~de-vdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 193 DAVSCLVIGTESGEIYILDPQAFT----ILKQVQLPSVPVFISVSGQYDE-VDYRIVVACRDGKIYTI 255 (257)
T ss_pred CCcceEEEEecCCeEEEECchhhe----eEEEEecCCCceEEEEEeeeec-cceEEEEEeCCCEEEEE
Confidence 344689999999999999998876 56666554444421 12321 23678899999998763
No 487
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=52.13 E-value=2.2e+02 Score=27.16 Aligned_cols=214 Identities=14% Similarity=0.140 Sum_probs=112.0
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-----CCCceEEEEeCCCC
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-----HKDEGYAIDWNPVA 245 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~s~~~ 245 (479)
.-+.|+++|.+ .+-++....+...+||......... ....+.++.. .....+.+.|+...
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~--------------~~~L~vtiP~~~~~~~~~~PTGiVfN~~~ 88 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLV--------------QDPLVVVIPAPPPLAAEGTPTGQVFNGSD 88 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCC--------------ccceEEEecCCCCCCCCCCccEEEEeCCC
Confidence 46789999988 4555667789999999973211100 0111222221 11245555555322
Q ss_pred -----------CCeEEEEeCCCeEEEEecCCCCccccC-CCCcc-cCCCcE-EEEEECC--CCCcEEEEEeCCCcEEEEE
Q 039302 246 -----------PGRLVSGDCNSCIHLWEPASDATWNVD-PNPFI-GHAASV-EDLQWSP--TESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 246 -----------~~~l~sg~~dg~I~lwd~~~~~~~~~~-~~~~~-~h~~~V-~~l~~sp--~~~~~l~s~s~dg~I~iwD 309 (479)
...++.++.||+|.-|...-....... ...+. +..+.| ..+++.. .+..+.++--..++|.+||
T Consensus 89 ~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd 168 (336)
T TIGR03118 89 TFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFK 168 (336)
T ss_pred ceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEec
Confidence 125788899999999986432220000 00011 112333 3344443 3444555555789999998
Q ss_pred cCCCCcee-eEE-----ecCCCC-----------EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--C
Q 039302 310 TRVGKSAL-MSF-----KAHNAD-----------VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--H 370 (479)
Q Consensus 310 ~~~~~~~~-~~~-----~~h~~~-----------v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h 370 (479)
-.-.+..+ ..+ .+.-.+ |+-..-.+.. +.=+.|..-|.|-+||+.-. .++++.. .
T Consensus 169 ~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~-~d~v~G~G~G~VdvFd~~G~-----l~~r~as~g~ 242 (336)
T TIGR03118 169 GSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR-NDEVAGAGLGYVNVFTLNGQ-----LLRRVASSGR 242 (336)
T ss_pred CccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc-cccccCCCcceEEEEcCCCc-----EEEEeccCCc
Confidence 66442111 000 000011 1111112222 22233455578999998632 5666632 2
Q ss_pred CCCeEEEEEeCC-----CCCEEEEEeCCCcEEEEECCCCC
Q 039302 371 KHPVTSIEWSPH-----EGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 371 ~~~I~~v~~sp~-----~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
-..-+.|+..|- .+.+|+---.||+|..+|..+..
T Consensus 243 LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 243 LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 234466766552 34667666679999999998764
No 488
>PLN02153 epithiospecifier protein
Probab=51.92 E-value=2.3e+02 Score=27.35 Aligned_cols=12 Identities=17% Similarity=0.022 Sum_probs=8.9
Q ss_pred CeEEEEeCCCCC
Q 039302 347 GTFSIHDLRLLK 358 (479)
Q Consensus 347 g~i~iwDlr~~~ 358 (479)
..|.+||+.+.+
T Consensus 217 ~~v~~yd~~~~~ 228 (341)
T PLN02153 217 NAVQFFDPASGK 228 (341)
T ss_pred CceEEEEcCCCc
Confidence 458889988765
No 489
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=51.88 E-value=2e+02 Score=26.73 Aligned_cols=190 Identities=11% Similarity=0.079 Sum_probs=96.9
Q ss_pred EEEecCCcce--eEEEEecCCCcEEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-CCceE
Q 039302 163 LRKVAHQGCV--NRIRAMSQNPHICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-KDEGY 237 (479)
Q Consensus 163 ~~~~~H~~~V--~~v~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~ 237 (479)
+...+|.... -.+.|..++ .++-+.+.-| .|+.+|+.+. +.+....-. .--.-
T Consensus 36 v~~ypHd~~aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg---------------------~~~~~~~l~~~~FgE 93 (264)
T PF05096_consen 36 VETYPHDPTAFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETG---------------------KVLQSVPLPPRYFGE 93 (264)
T ss_dssp EEEEE--TT-EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTS---------------------SEEEEEE-TTT--EE
T ss_pred EEECCCCCcccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCC---------------------cEEEEEECCccccce
Confidence 4566776543 456776667 6776767666 6888888762 222221111 11222
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
.+....+. ...-.-.++...+||..+-+.... ..+ .+.=..++ .++. .|+.......|+++|..+.+ ..
T Consensus 94 Git~~~d~--l~qLTWk~~~~f~yd~~tl~~~~~--~~y---~~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~-~~ 162 (264)
T PF05096_consen 94 GITILGDK--LYQLTWKEGTGFVYDPNTLKKIGT--FPY---PGEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFK-EV 162 (264)
T ss_dssp EEEEETTE--EEEEESSSSEEEEEETTTTEEEEE--EE----SSS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-S-EE
T ss_pred eEEEECCE--EEEEEecCCeEEEEccccceEEEE--Eec---CCcceEEE--cCCC-EEEEECCccceEEECCcccc-eE
Confidence 22222211 333344578889999876433221 122 23445555 3455 34444446789999987764 23
Q ss_pred eEEec--C---CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---------------CCCCeEEE
Q 039302 318 MSFKA--H---NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---------------HKHPVTSI 377 (479)
Q Consensus 318 ~~~~~--h---~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---------------h~~~I~~v 377 (479)
..+.. . -..+|-+-|- +| .+.|=.=....|...|..++. .+..+.. ...-.+.|
T Consensus 163 ~~i~V~~~g~pv~~LNELE~i-~G-~IyANVW~td~I~~Idp~tG~----V~~~iDls~L~~~~~~~~~~~~~~dVLNGI 236 (264)
T PF05096_consen 163 RTIQVTDNGRPVSNLNELEYI-NG-KIYANVWQTDRIVRIDPETGK----VVGWIDLSGLRPEVGRDKSRQPDDDVLNGI 236 (264)
T ss_dssp EEEE-EETTEE---EEEEEEE-TT-EEEEEETTSSEEEEEETTT-B----EEEEEE-HHHHHHHTSTTST--TTS-EEEE
T ss_pred EEEEEEECCEECCCcEeEEEE-cC-EEEEEeCCCCeEEEEeCCCCe----EEEEEEhhHhhhcccccccccccCCeeEeE
Confidence 33321 1 1245666665 24 555555556667777777766 3443321 13457899
Q ss_pred EEeCCCCCEEEEEe
Q 039302 378 EWSPHEGSTLAVSS 391 (479)
Q Consensus 378 ~~sp~~~~~las~s 391 (479)
+|+|..+.+++||-
T Consensus 237 Ayd~~~~~l~vTGK 250 (264)
T PF05096_consen 237 AYDPETDRLFVTGK 250 (264)
T ss_dssp EEETTTTEEEEEET
T ss_pred eEeCCCCEEEEEeC
Confidence 99998877777774
No 490
>PHA02790 Kelch-like protein; Provisional
Probab=51.15 E-value=2.9e+02 Score=28.31 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=46.8
Q ss_pred eEEEEeCCC---eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce-eeEEecC
Q 039302 248 RLVSGDCNS---CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-LMSFKAH 323 (479)
Q Consensus 248 ~l~sg~~dg---~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-~~~~~~h 323 (479)
..+.|+.++ .+..||+.+ ..|.... +..........+.+ ++. +++.| |.+.+||.++.+-. +..+...
T Consensus 365 IYviGG~~~~~~~ve~ydp~~-~~W~~~~-~m~~~r~~~~~~~~--~~~-IYv~G---G~~e~ydp~~~~W~~~~~m~~~ 436 (480)
T PHA02790 365 IYVIGGHSETDTTTEYLLPNH-DQWQFGP-STYYPHYKSCALVF--GRR-LFLVG---RNAEFYCESSNTWTLIDDPIYP 436 (480)
T ss_pred EEEecCcCCCCccEEEEeCCC-CEEEeCC-CCCCccccceEEEE--CCE-EEEEC---CceEEecCCCCcEeEcCCCCCC
Confidence 556666543 467788865 4554321 11111111122222 344 66666 45778998765311 1111111
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCC
Q 039302 324 NADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLL 357 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~ 357 (479)
......+.+ ++ .+.+.||.+ ..|..||..+.
T Consensus 437 r~~~~~~v~--~~-~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 437 RDNPELIIV--DN-KLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ccccEEEEE--CC-EEEEECCcCCCcccceEEEEECCCC
Confidence 122222233 23 678888764 24566666544
No 491
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=49.55 E-value=3.3e+02 Score=28.41 Aligned_cols=149 Identities=13% Similarity=0.115 Sum_probs=77.9
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC--CCCcEEEEEe------CCCcEEEEEcCCCCceeeE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP--TESDVFASCS------VDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~~l~s~s------~dg~I~iwD~~~~~~~~~~ 319 (479)
+++.++.++.|.-.|..+++..-. .....+... ..+.-+| .+. .+++++ .+|.|.-+|.++++ .+-.
T Consensus 122 ~v~v~t~dg~l~ALDa~TGk~~W~--~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~-~lW~ 196 (527)
T TIGR03075 122 KVFFGTLDARLVALDAKTGKVVWS--KKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGK-LVWR 196 (527)
T ss_pred EEEEEcCCCEEEEEECCCCCEEee--ccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCc-eeEe
Confidence 777888899999999988765221 111111100 0011111 122 344443 26889999999886 2222
Q ss_pred EecC-------------------------------CCCE-EEEEEcCCCCcEEEEEeCC-----C-----------eEEE
Q 039302 320 FKAH-------------------------------NADV-NVISWNRLASCLLASGSDD-----G-----------TFSI 351 (479)
Q Consensus 320 ~~~h-------------------------------~~~v-~~l~~~p~~~~~l~sgs~d-----g-----------~i~i 351 (479)
+..- ...+ ..+++.+.. .+|..+..+ + .|.-
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~-~lvy~~tGnp~p~~~~~r~gdnl~~~s~vA 275 (527)
T TIGR03075 197 RYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPET-NLIYFGTGNPSPWNSHLRPGDNLYTSSIVA 275 (527)
T ss_pred ccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCC-CeEEEeCCCCCCCCCCCCCCCCccceeEEE
Confidence 2110 0011 123556655 444444422 2 5566
Q ss_pred EeCCCCCCCCceEEEeecCCCCeE---------EEEEeCCCC--CEEEEEeCCCcEEEEECCCCCC
Q 039302 352 HDLRLLKGGDSVVAHFEYHKHPVT---------SIEWSPHEG--STLAVSSADNQLTIWDLSLEKD 406 (479)
Q Consensus 352 wDlr~~~~~~~~~~~~~~h~~~I~---------~v~~sp~~~--~~las~s~Dg~I~iwdl~~~~~ 406 (479)
.|+++++ ..-.|+.....++ -+....++. .+++.+..+|.+.+.|-.+++.
T Consensus 276 ld~~TG~----~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 276 RDPDTGK----IKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EccccCC----EEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCce
Confidence 6777776 4444543222111 122222232 3788999999999999988753
No 492
>PLN02193 nitrile-specifier protein
Probab=45.74 E-value=3.5e+02 Score=27.65 Aligned_cols=102 Identities=11% Similarity=0.077 Sum_probs=48.7
Q ss_pred eEEEEeCC-----CeEEEEecCCCCccccCCCCcc--cCCCcEEEEEECCCCCcEEEEEeCCC-----cEEEEEcCCCCc
Q 039302 248 RLVSGDCN-----SCIHLWEPASDATWNVDPNPFI--GHAASVEDLQWSPTESDVFASCSVDG-----NIAIWDTRVGKS 315 (479)
Q Consensus 248 ~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s~dg-----~I~iwD~~~~~~ 315 (479)
+++.|+.+ ..+.++|+.+ ..|.... ... .....-.+++.. .+. +++.|+.++ .+..||+.+..-
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t-~~W~~l~-~~~~~P~~R~~h~~~~~-~~~-iYv~GG~~~~~~~~~~~~yd~~t~~W 306 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTT-NEWKLLT-PVEEGPTPRSFHSMAAD-EEN-VYVFGGVSATARLKTLDSYNIVDKKW 306 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCC-CEEEEcC-cCCCCCCCccceEEEEE-CCE-EEEECCCCCCCCcceEEEEECCCCEE
Confidence 55556544 3577888866 3444211 110 000011112211 334 777777543 367788776531
Q ss_pred eeeEEe------cCCCCEEEEEEcCCCCcEEEEEeCC----CeEEEEeCCCCC
Q 039302 316 ALMSFK------AHNADVNVISWNRLASCLLASGSDD----GTFSIHDLRLLK 358 (479)
Q Consensus 316 ~~~~~~------~h~~~v~~l~~~p~~~~~l~sgs~d----g~i~iwDlr~~~ 358 (479)
..+. ........+.+ ++ .+++.|+.+ ..+.+||+.+..
T Consensus 307 --~~~~~~~~~~~~R~~~~~~~~--~g-kiyviGG~~g~~~~dv~~yD~~t~~ 354 (470)
T PLN02193 307 --FHCSTPGDSFSIRGGAGLEVV--QG-KVWVVYGFNGCEVDDVHYYDPVQDK 354 (470)
T ss_pred --EeCCCCCCCCCCCCCcEEEEE--CC-cEEEEECCCCCccCceEEEECCCCE
Confidence 1111 01111122222 34 577777655 458899988765
No 493
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=45.60 E-value=57 Score=18.51 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=19.5
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEE
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIH 352 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iw 352 (479)
.|.+++..+ .+++++.+.+.+++|
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRif 26 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIF 26 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEec
Confidence 467777765 689999999999987
No 494
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=45.44 E-value=3.5e+02 Score=27.56 Aligned_cols=63 Identities=14% Similarity=0.141 Sum_probs=38.7
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc-CCCCc-c-cCCCcEEEEEECCCC
Q 039302 229 FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV-DPNPF-I-GHAASVEDLQWSPTE 292 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~-~~~~~-~-~h~~~V~~l~~sp~~ 292 (479)
+...-..-+.|+|.|++. +|++--..|.|++++..+...... ....+ . .-......|+++|+-
T Consensus 25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 333345678999999985 555554469999998654322111 01111 1 125678999999885
No 495
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=45.34 E-value=1e+02 Score=30.50 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=37.8
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE------eCCCcEEEEEcCCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC------SVDGNIAIWDTRVGK 314 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~------s~dg~I~iwD~~~~~ 314 (479)
.+..-+.-+.|-+|+..+.+........-....+.-.-+.|.+....++.+. ..++.|++||.|...
T Consensus 237 ~l~~~s~~~~Igvw~~~t~q~~d~~~~s~~dsag~~~kL~w~ng~~~li~~~~fp~~~kdN~~i~~~d~Rd~n 309 (465)
T KOG2714|consen 237 QLVALSSVGKIGVWHAVTQQAQDVQPISSYDSAGSFLKLGWLNGSNLLIDSQKFPLRMKDNDLIVTEDFRDRN 309 (465)
T ss_pred hhhhccccccccccchhhhceeeeeeccCccccCChhhhccccCceeEEEEeeccccccCCceEEEeeccCCC
Confidence 3444566788999998775221111111111233445567776555333333 357889999999875
No 496
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=45.25 E-value=3.5e+02 Score=27.54 Aligned_cols=56 Identities=11% Similarity=0.078 Sum_probs=37.2
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-----cCCCCeEEEEEeCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-----YHKHPVTSIEWSPH 382 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-----~h~~~I~~v~~sp~ 382 (479)
-..-..|+|.|++ .+|++--..|.|++++...... ..+..+. .-......|+++|+
T Consensus 29 L~~Pw~maflPDG-~llVtER~~G~I~~v~~~~~~~--~~~~~l~~v~~~~ge~GLlglal~Pd 89 (454)
T TIGR03606 29 LNKPWALLWGPDN-QLWVTERATGKILRVNPETGEV--KVVFTLPEIVNDAQHNGLLGLALHPD 89 (454)
T ss_pred CCCceEEEEcCCC-eEEEEEecCCEEEEEeCCCCce--eeeecCCceeccCCCCceeeEEECCC
Confidence 3456889999998 7777765579999998655431 1222111 12567899999985
No 497
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=41.40 E-value=61 Score=34.44 Aligned_cols=33 Identities=18% Similarity=0.242 Sum_probs=27.9
Q ss_pred CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 280 AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 280 ~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
...+++++-+|.+. .|++++.||+|++|+.-..
T Consensus 14 ~e~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred cceeeeeeecCCCc-eEEEEecCCcEEEEeeccc
Confidence 34578889899888 8999999999999997654
No 498
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=41.27 E-value=78 Score=23.76 Aligned_cols=32 Identities=13% Similarity=0.309 Sum_probs=25.9
Q ss_pred CcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 281 ASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 281 ~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
...+.|.++|+++.++++....+.|++|..+.
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 34578999999997778888889999998653
No 499
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=39.00 E-value=4.1e+02 Score=26.58 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=89.9
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+-...|.++||..+- .+++|--...-+.+-|+....+ .+.+..++ -++++--.+|-+
T Consensus 424 l~~gERIYAvRf~gdv-~yiVTfrqtDPlfviDlsNPen------------------PkvlGeLK---IPGfS~YLHpig 481 (603)
T COG4880 424 LAPGERIYAVRFVGDV-LYIVTFRQTDPLFVIDLSNPEN------------------PKVLGELK---IPGFSEYLHPIG 481 (603)
T ss_pred cCCCceEEEEEEeCce-EEEEEEeccCceEEEEcCCCCC------------------CceeEEEe---cCCchhhccccC
Confidence 3455789999999887 6778877777788999887321 22222222 244555667777
Q ss_pred CCe-EEEEeCCC--eEEEEecCCCCccccCC---------CCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 246 PGR-LVSGDCNS--CIHLWEPASDATWNVDP---------NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 246 ~~~-l~sg~~dg--~I~lwd~~~~~~~~~~~---------~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
.++ |-.|..+| .|.++|+.......-.. ..|..| ....|.|...-.|+-+...|. |+-+..+
T Consensus 482 en~~lGvG~~~g~vKiSLFdiSdl~~PkEv~~y~l~~~wspvf~dh----HAFl~d~~~~ifFlPay~~gy--if~iedg 555 (603)
T COG4880 482 ENRLLGVGAYQGGVKISLFDISDLAAPKEVSNYTLSNAWSPVFYDH----HAFLYDPEAEIFFLPAYLGGY--IFFIEDG 555 (603)
T ss_pred CCcEEEeecccCCceEEEEeccCCCCchhhhheehhhhcchhhhcc----ceeecCCcccEEEecccCccE--EEEEecC
Confidence 764 44566667 46678886543211000 112222 345666666645666666666 4445554
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
. .+..-..|...+-..-|..+- +...|+ ..+.++|-.+.+
T Consensus 556 ~-kl~k~~e~k~na~RA~fi~dy--lY~vg~--~ev~~ldenswe 595 (603)
T COG4880 556 S-KLRKRAERKLNADRAFFIKDY--LYLVGG--NEVWKLDENSWE 595 (603)
T ss_pred c-eeeehhhhcccceeeEEecce--EEEecc--ceeEEeccchHh
Confidence 2 344444566666555565533 333333 246666665544
No 500
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues. The function of this protein is unknown.; GO: 0008270 zinc ion binding, 0005634 nucleus
Probab=38.42 E-value=22 Score=32.35 Aligned_cols=25 Identities=36% Similarity=0.696 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCccccCC
Q 039302 130 PATGDEDADGESSDSDDDSDDEEEG 154 (479)
Q Consensus 130 ~~~~~~~~~~~~~~~~~d~~~~~~~ 154 (479)
.++++++++++++++++++++++++
T Consensus 272 ~~ddd~~d~d~d~d~eed~~d~~~e 296 (314)
T PF06524_consen 272 EDDDDDDDEDDDEDDEEDEDDEEEE 296 (314)
T ss_pred ccccccccccccccccccccccccc
Done!