Query 039302
Match_columns 479
No_of_seqs 740 out of 3925
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 14:05:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039302.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039302hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xyi_A Probable histone-bindin 100.0 1.8E-53 6.1E-58 428.8 34.5 378 37-470 24-411 (430)
2 4gqb_B Methylosome protein 50; 100.0 3.6E-40 1.2E-44 321.5 34.3 248 164-469 77-331 (344)
3 1vyh_C Platelet-activating fac 100.0 2.2E-39 7.5E-44 324.0 35.7 246 163-467 144-409 (410)
4 2ynn_A Coatomer subunit beta'; 100.0 1.1E-38 3.7E-43 305.7 38.9 253 161-469 47-302 (304)
5 3ow8_A WD repeat-containing pr 100.0 1.1E-38 3.9E-43 308.1 37.7 287 69-467 31-319 (321)
6 2ynn_A Coatomer subunit beta'; 100.0 1.2E-38 4.1E-43 305.5 34.6 253 161-470 5-260 (304)
7 4g56_B MGC81050 protein; prote 100.0 1.3E-38 4.5E-43 312.4 32.0 255 163-470 88-344 (357)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.2E-37 4E-42 304.1 38.1 265 165-472 57-338 (345)
9 2pm7_B Protein transport prote 100.0 1E-37 3.5E-42 298.0 34.3 262 163-468 3-284 (297)
10 1vyh_C Platelet-activating fac 100.0 8.5E-38 2.9E-42 312.4 34.9 248 163-470 102-370 (410)
11 4gqb_B Methylosome protein 50; 100.0 3.7E-37 1.3E-41 300.2 36.4 216 160-405 118-333 (344)
12 3frx_A Guanine nucleotide-bind 100.0 2.4E-37 8.2E-42 298.5 34.1 256 159-469 7-267 (319)
13 1got_B GT-beta; complex (GTP-b 100.0 1.1E-36 3.9E-41 296.4 38.2 247 163-466 91-340 (340)
14 1got_B GT-beta; complex (GTP-b 100.0 8.9E-37 3.1E-41 297.2 35.6 253 161-469 47-301 (340)
15 3iz6_a 40S ribosomal protein R 100.0 9.4E-37 3.2E-41 301.7 33.4 301 70-470 66-376 (380)
16 2pbi_B Guanine nucleotide-bind 100.0 6.9E-36 2.3E-40 292.6 38.8 287 70-466 64-354 (354)
17 2hes_X YDR267CP; beta-propelle 100.0 1.4E-36 4.7E-41 294.6 33.1 261 167-468 56-327 (330)
18 3ow8_A WD repeat-containing pr 100.0 6.7E-37 2.3E-41 295.7 30.5 254 158-469 21-279 (321)
19 4ery_A WD repeat-containing pr 100.0 1.7E-35 5.8E-40 284.2 37.3 246 162-467 58-310 (312)
20 3iz6_a 40S ribosomal protein R 100.0 2E-36 6.9E-41 299.3 29.8 260 158-468 55-328 (380)
21 3frx_A Guanine nucleotide-bind 100.0 5.3E-35 1.8E-39 282.1 38.9 253 162-469 58-317 (319)
22 2pbi_B Guanine nucleotide-bind 100.0 1.3E-35 4.6E-40 290.6 35.2 255 161-469 56-315 (354)
23 2xzm_R RACK1; ribosome, transl 100.0 9.2E-35 3.1E-39 283.3 40.5 262 161-469 68-340 (343)
24 4g56_B MGC81050 protein; prote 100.0 2.6E-36 8.8E-41 296.0 28.9 254 166-469 39-301 (357)
25 1erj_A Transcriptional repress 100.0 7E-35 2.4E-39 289.6 38.6 248 167-471 121-391 (393)
26 3bg1_A Protein SEC13 homolog; 100.0 8.3E-37 2.8E-41 294.3 23.8 262 161-468 5-292 (316)
27 2j04_B YDR362CP, TAU91; beta p 100.0 5.3E-36 1.8E-40 307.1 30.8 343 66-469 129-517 (524)
28 2hes_X YDR267CP; beta-propelle 100.0 5.2E-35 1.8E-39 283.5 33.0 264 160-469 5-280 (330)
29 3fm0_A Protein CIAO1; WDR39,SG 100.0 3E-35 1E-39 287.1 31.4 271 160-469 6-283 (345)
30 4ery_A WD repeat-containing pr 100.0 8.5E-35 2.9E-39 279.3 34.1 256 158-470 12-269 (312)
31 1nr0_A Actin interacting prote 100.0 9.5E-35 3.2E-39 305.3 36.5 272 163-469 53-355 (611)
32 2xzm_R RACK1; ribosome, transl 100.0 1.5E-34 5.1E-39 281.8 34.8 257 160-469 12-285 (343)
33 2pm9_A Protein WEB1, protein t 100.0 5.3E-35 1.8E-39 291.5 30.6 262 165-472 63-340 (416)
34 2pm9_A Protein WEB1, protein t 100.0 1.6E-35 5.6E-40 295.2 24.4 323 67-468 64-413 (416)
35 3i2n_A WD repeat-containing pr 100.0 8.4E-34 2.9E-38 276.5 34.6 315 69-471 17-355 (357)
36 3dm0_A Maltose-binding peripla 100.0 2.5E-34 8.5E-39 306.6 32.6 254 161-469 374-632 (694)
37 1k8k_C P40, ARP2/3 complex 41 100.0 5.5E-34 1.9E-38 279.6 32.4 279 161-471 44-363 (372)
38 3jrp_A Fusion protein of prote 100.0 4.7E-34 1.6E-38 280.4 30.8 261 163-469 5-287 (379)
39 1nr0_A Actin interacting prote 100.0 8.9E-34 3E-38 297.9 34.0 258 161-470 182-568 (611)
40 3dm0_A Maltose-binding peripla 100.0 4.9E-33 1.7E-37 296.7 39.8 269 160-468 421-692 (694)
41 4aow_A Guanine nucleotide-bind 100.0 1.5E-33 5.2E-38 272.9 32.4 257 160-469 29-286 (340)
42 1gxr_A ESG1, transducin-like e 100.0 2E-32 7E-37 264.3 39.0 249 159-468 87-336 (337)
43 2ymu_A WD-40 repeat protein; u 100.0 6.9E-33 2.4E-37 288.5 38.3 239 163-466 338-577 (577)
44 1sq9_A Antiviral protein SKI8; 100.0 8.8E-33 3E-37 273.8 36.2 255 162-469 55-395 (397)
45 4aez_A CDC20, WD repeat-contai 100.0 8.7E-33 3E-37 275.1 36.0 248 164-470 129-381 (401)
46 1erj_A Transcriptional repress 100.0 4.3E-33 1.5E-37 276.7 33.6 256 164-469 59-341 (393)
47 3k26_A Polycomb protein EED; W 100.0 1.5E-33 5.1E-38 275.5 29.6 255 167-468 67-365 (366)
48 3f3f_A Nucleoporin SEH1; struc 100.0 2.3E-33 8E-38 271.3 30.4 285 162-470 4-338 (351)
49 3vl1_A 26S proteasome regulato 100.0 1.4E-32 4.6E-37 274.7 35.7 262 163-469 133-419 (420)
50 4e54_B DNA damage-binding prot 100.0 1.8E-33 6.1E-38 283.3 28.6 250 162-470 157-431 (435)
51 4aow_A Guanine nucleotide-bind 100.0 3.7E-32 1.3E-36 263.2 36.8 260 160-470 77-338 (340)
52 3zwl_B Eukaryotic translation 100.0 9.8E-32 3.3E-36 262.7 39.7 252 162-470 67-347 (369)
53 1r5m_A SIR4-interacting protei 100.0 4.7E-32 1.6E-36 270.1 37.4 263 167-468 106-424 (425)
54 3dwl_C Actin-related protein 2 100.0 8.5E-34 2.9E-38 279.4 23.1 214 163-402 49-280 (377)
55 3dwl_C Actin-related protein 2 100.0 3E-34 1E-38 282.6 19.7 256 165-468 7-280 (377)
56 4e54_B DNA damage-binding prot 100.0 1.7E-33 5.7E-38 283.5 25.2 217 163-405 113-329 (435)
57 4gga_A P55CDC, cell division c 100.0 1.2E-31 4.2E-36 268.6 37.9 247 163-470 141-396 (420)
58 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-32 4.5E-37 273.8 29.8 258 164-469 76-342 (402)
59 2ymu_A WD-40 repeat protein; u 100.0 1.4E-31 4.9E-36 278.6 38.8 240 163-467 297-537 (577)
60 2pm7_B Protein transport prote 100.0 9.8E-32 3.4E-36 256.4 34.5 218 163-404 47-286 (297)
61 3ei3_B DNA damage-binding prot 100.0 2.1E-32 7.1E-37 270.3 30.4 247 163-469 112-382 (383)
62 1k8k_C P40, ARP2/3 complex 41 100.0 4E-32 1.4E-36 266.3 32.1 254 165-469 4-274 (372)
63 3vl1_A 26S proteasome regulato 100.0 9.7E-33 3.3E-37 275.8 28.1 242 171-470 99-366 (420)
64 3dw8_B Serine/threonine-protei 100.0 4.5E-32 1.5E-36 273.0 33.1 336 71-467 29-444 (447)
65 4h5i_A Guanine nucleotide-exch 100.0 3.5E-33 1.2E-37 274.6 23.7 311 66-468 10-342 (365)
66 1gxr_A ESG1, transducin-like e 100.0 3.6E-31 1.2E-35 255.5 36.9 252 161-470 43-297 (337)
67 3ei3_B DNA damage-binding prot 100.0 9.9E-32 3.4E-36 265.4 33.0 220 159-405 63-284 (383)
68 3i2n_A WD repeat-containing pr 100.0 5.9E-32 2E-36 263.4 30.7 257 160-470 9-292 (357)
69 3zwl_B Eukaryotic translation 100.0 2.4E-31 8.2E-36 259.9 35.1 244 158-460 21-281 (369)
70 3odt_A Protein DOA1; ubiquitin 100.0 7.7E-31 2.6E-35 250.6 37.5 246 161-470 51-297 (313)
71 3v7d_B Cell division control p 100.0 1.9E-31 6.6E-36 270.3 35.0 248 161-470 154-422 (464)
72 3bg1_A Protein SEC13 homolog; 100.0 4.8E-32 1.6E-36 261.0 28.1 222 161-404 49-294 (316)
73 4a11_B DNA excision repair pro 100.0 4.7E-31 1.6E-35 261.6 36.1 281 163-471 37-367 (408)
74 3mkq_A Coatomer beta'-subunit; 100.0 2E-31 6.9E-36 288.8 35.9 251 161-469 47-302 (814)
75 3dw8_B Serine/threonine-protei 100.0 3E-32 1E-36 274.3 26.6 267 167-470 26-374 (447)
76 2j04_B YDR362CP, TAU91; beta p 100.0 1.5E-32 5.1E-37 281.5 24.7 256 165-469 129-428 (524)
77 3jro_A Fusion protein of prote 100.0 1.7E-32 5.9E-37 294.7 25.5 263 163-469 3-285 (753)
78 2aq5_A Coronin-1A; WD40 repeat 100.0 1.4E-31 4.7E-36 266.4 29.2 255 169-470 34-300 (402)
79 4ggc_A P55CDC, cell division c 100.0 3.7E-30 1.3E-34 246.6 37.4 250 160-470 58-316 (318)
80 4gq1_A NUP37; propeller, trans 100.0 6.6E-32 2.3E-36 268.2 25.4 239 183-472 102-392 (393)
81 2xyi_A Probable histone-bindin 100.0 1.1E-30 3.8E-35 262.5 34.3 227 163-404 175-411 (430)
82 1sq9_A Antiviral protein SKI8; 100.0 1.8E-31 6E-36 264.4 28.0 259 161-470 8-323 (397)
83 4aez_A CDC20, WD repeat-contai 100.0 1.2E-30 4.1E-35 259.6 32.5 250 158-469 80-336 (401)
84 3mkq_A Coatomer beta'-subunit; 100.0 4E-31 1.4E-35 286.5 31.4 249 162-469 6-259 (814)
85 1r5m_A SIR4-interacting protei 100.0 1.3E-30 4.3E-35 259.8 32.5 264 161-471 37-363 (425)
86 3mmy_A MRNA export factor; mRN 100.0 4.6E-31 1.6E-35 257.8 28.0 253 163-470 33-347 (368)
87 3gre_A Serine/threonine-protei 100.0 2.3E-31 7.7E-36 267.6 26.0 271 166-466 108-437 (437)
88 4a11_B DNA excision repair pro 100.0 6.3E-30 2.2E-34 253.5 35.2 211 167-405 97-367 (408)
89 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3E-29 1E-33 253.5 39.6 250 165-469 98-391 (450)
90 3k26_A Polycomb protein EED; W 100.0 3E-31 1E-35 259.1 24.1 264 164-470 13-319 (366)
91 3gre_A Serine/threonine-protei 100.0 5.9E-31 2E-35 264.6 26.8 280 161-470 54-360 (437)
92 1yfq_A Cell cycle arrest prote 100.0 1.6E-29 5.5E-34 244.9 35.8 236 163-461 50-314 (342)
93 1p22_A F-BOX/WD-repeat protein 100.0 9.1E-30 3.1E-34 256.1 34.9 248 162-470 166-415 (435)
94 3odt_A Protein DOA1; ubiquitin 100.0 1.2E-29 3.9E-34 242.4 33.3 247 158-470 7-256 (313)
95 3f3f_A Nucleoporin SEH1; struc 100.0 2.8E-29 9.6E-34 242.6 33.2 266 71-405 12-339 (351)
96 3v7d_B Cell division control p 100.0 1.9E-29 6.5E-34 255.6 32.8 243 161-470 113-382 (464)
97 4h5i_A Guanine nucleotide-exch 100.0 3.6E-30 1.2E-34 253.0 26.0 205 167-404 131-344 (365)
98 3jrp_A Fusion protein of prote 100.0 2.2E-29 7.7E-34 247.0 31.5 254 70-403 11-287 (379)
99 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-29 4.4E-34 287.2 33.6 252 162-469 608-913 (1249)
100 1yfq_A Cell cycle arrest prote 100.0 9.4E-30 3.2E-34 246.6 27.9 253 166-470 8-283 (342)
101 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-28 4.9E-33 248.0 35.6 239 162-470 152-392 (445)
102 3sfz_A APAF-1, apoptotic pepti 100.0 8E-29 2.7E-33 280.6 37.3 208 162-402 650-912 (1249)
103 1pgu_A Actin interacting prote 100.0 9.2E-29 3.1E-33 258.9 34.9 253 161-469 55-328 (615)
104 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.5E-28 8.7E-33 246.1 36.6 241 160-468 190-441 (445)
105 4gga_A P55CDC, cell division c 100.0 1.3E-28 4.6E-33 246.4 34.1 242 171-470 107-354 (420)
106 2oaj_A Protein SNI1; WD40 repe 100.0 1.8E-29 6.1E-34 275.5 29.9 206 163-405 11-244 (902)
107 1pgu_A Actin interacting prote 100.0 8.1E-29 2.8E-33 259.3 30.0 250 166-470 15-284 (615)
108 1p22_A F-BOX/WD-repeat protein 100.0 9.1E-28 3.1E-32 241.5 32.9 235 164-470 128-366 (435)
109 3lrv_A PRE-mRNA-splicing facto 100.0 2.3E-28 7.9E-33 237.9 26.9 212 169-405 76-294 (343)
110 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.7E-28 1.3E-32 245.5 29.2 282 169-467 4-337 (450)
111 3lrv_A PRE-mRNA-splicing facto 100.0 4.4E-29 1.5E-33 243.0 21.2 232 179-469 46-292 (343)
112 4ggc_A P55CDC, cell division c 100.0 4.7E-27 1.6E-31 225.0 32.9 241 172-470 28-274 (318)
113 2j04_A TAU60, YPL007P, hypothe 100.0 5.5E-28 1.9E-32 243.0 25.7 262 163-470 9-298 (588)
114 3jro_A Fusion protein of prote 100.0 4.9E-28 1.7E-32 260.1 25.7 220 160-404 44-286 (753)
115 1l0q_A Surface layer protein; 100.0 2.3E-26 7.8E-31 227.3 35.5 242 167-469 29-275 (391)
116 2oaj_A Protein SNI1; WD40 repe 100.0 1.3E-26 4.5E-31 252.9 34.8 206 165-402 54-311 (902)
117 3vu4_A KMHSV2; beta-propeller 100.0 9.3E-26 3.2E-30 220.7 37.4 256 171-470 60-337 (355)
118 3bws_A Protein LP49; two-domai 100.0 1.9E-26 6.4E-31 231.2 32.0 243 165-469 165-432 (433)
119 4gq1_A NUP37; propeller, trans 100.0 5.3E-27 1.8E-31 232.8 24.3 208 164-401 131-387 (393)
120 3mmy_A MRNA export factor; mRN 100.0 2.9E-26 9.9E-31 223.7 28.1 253 70-404 39-347 (368)
121 3vu4_A KMHSV2; beta-propeller 99.9 4.2E-26 1.4E-30 223.1 26.0 241 164-470 14-272 (355)
122 2w18_A PALB2, fancn, partner a 99.9 1.5E-26 5E-31 219.1 19.9 199 168-402 110-356 (356)
123 2j04_A TAU60, YPL007P, hypothe 99.9 7.1E-26 2.4E-30 227.7 25.5 197 167-402 83-296 (588)
124 2w18_A PALB2, fancn, partner a 99.9 4.7E-25 1.6E-29 208.8 27.2 194 234-467 112-355 (356)
125 3bws_A Protein LP49; two-domai 99.9 1.1E-24 3.9E-29 218.2 26.3 246 164-469 117-390 (433)
126 1l0q_A Surface layer protein; 99.9 1E-23 3.6E-28 208.2 27.9 227 183-469 3-233 (391)
127 2hqs_A Protein TOLB; TOLB, PAL 99.9 1E-22 3.4E-27 203.4 30.4 248 158-468 106-386 (415)
128 2ojh_A Uncharacterized protein 99.9 2.5E-22 8.7E-27 189.2 27.3 241 164-460 36-293 (297)
129 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.2E-21 7.6E-26 193.6 32.9 222 164-450 173-409 (415)
130 2oit_A Nucleoporin 214KDA; NH2 99.9 4.6E-22 1.6E-26 199.6 24.9 219 169-404 36-279 (434)
131 1ri6_A Putative isomerase YBHE 99.9 8.2E-21 2.8E-25 183.3 32.6 263 163-468 31-307 (343)
132 3u4y_A Uncharacterized protein 99.9 5.1E-20 1.7E-24 177.3 32.2 253 167-469 38-304 (331)
133 3hfq_A Uncharacterized protein 99.9 4.4E-20 1.5E-24 179.3 31.5 293 93-468 2-316 (347)
134 1nir_A Nitrite reductase; hemo 99.9 6.1E-20 2.1E-24 189.2 31.0 253 172-471 181-460 (543)
135 1nir_A Nitrite reductase; hemo 99.9 5.5E-20 1.9E-24 189.5 29.6 258 165-470 217-515 (543)
136 3scy_A Hypothetical bacterial 99.9 2.3E-18 7.8E-23 168.2 36.2 292 91-468 11-336 (361)
137 3vgz_A Uncharacterized protein 99.9 8.7E-19 3E-23 170.0 32.2 234 167-459 86-334 (353)
138 2oit_A Nucleoporin 214KDA; NH2 99.9 9.9E-21 3.4E-25 189.9 18.4 206 234-470 37-279 (434)
139 3vgz_A Uncharacterized protein 99.8 1E-18 3.5E-23 169.5 28.7 246 166-469 37-303 (353)
140 2ecf_A Dipeptidyl peptidase IV 99.8 2E-19 7E-24 192.7 25.2 240 169-468 36-366 (741)
141 3u4y_A Uncharacterized protein 99.8 1.1E-18 3.7E-23 168.0 27.3 243 176-469 4-252 (331)
142 2ecf_A Dipeptidyl peptidase IV 99.8 5.8E-19 2E-23 189.2 28.1 237 170-468 109-412 (741)
143 2ojh_A Uncharacterized protein 99.8 3.4E-19 1.2E-23 167.6 23.1 226 187-469 17-258 (297)
144 1pby_B Quinohemoprotein amine 99.8 6.5E-19 2.2E-23 169.5 25.0 236 171-470 35-311 (337)
145 1xfd_A DIP, dipeptidyl aminope 99.8 5.5E-19 1.9E-23 188.8 25.5 247 165-468 53-392 (723)
146 2z3z_A Dipeptidyl aminopeptida 99.8 2.3E-18 7.8E-23 183.6 27.5 261 164-468 115-434 (706)
147 1ri6_A Putative isomerase YBHE 99.8 1.3E-18 4.4E-23 167.8 23.2 241 181-468 4-261 (343)
148 1xfd_A DIP, dipeptidyl aminope 99.8 6E-19 2E-23 188.5 20.6 234 170-461 17-329 (723)
149 3o4h_A Acylamino-acid-releasin 99.8 2.1E-18 7.2E-23 179.7 20.5 232 169-467 21-274 (582)
150 2z3z_A Dipeptidyl aminopeptida 99.8 9.9E-18 3.4E-22 178.6 23.4 240 169-468 81-388 (706)
151 1k32_A Tricorn protease; prote 99.8 1.8E-17 6.3E-22 184.2 25.7 243 171-468 246-501 (1045)
152 1jmx_B Amine dehydrogenase; ox 99.8 2.7E-17 9.2E-22 159.0 21.6 231 175-470 5-326 (349)
153 3hfq_A Uncharacterized protein 99.8 1.9E-16 6.5E-21 153.5 26.2 218 164-403 80-317 (347)
154 1k32_A Tricorn protease; prote 99.8 5.7E-17 1.9E-21 180.3 24.2 245 164-469 198-461 (1045)
155 1z68_A Fibroblast activation p 99.7 6.4E-17 2.2E-21 172.7 22.3 236 171-468 61-390 (719)
156 3o4h_A Acylamino-acid-releasin 99.7 1.3E-16 4.4E-21 166.1 23.8 199 164-401 58-274 (582)
157 1jof_A Carboxy-CIS,CIS-muconat 99.7 2.1E-15 7.3E-20 147.5 29.9 251 167-468 37-340 (365)
158 1jmx_B Amine dehydrogenase; ox 99.7 1.1E-15 3.8E-20 147.6 26.2 196 171-404 44-326 (349)
159 1z68_A Fibroblast activation p 99.7 2.6E-17 8.9E-22 175.8 15.0 194 174-404 20-292 (719)
160 1pby_B Quinohemoprotein amine 99.7 3E-15 1E-19 143.6 25.2 195 171-405 83-312 (337)
161 4a5s_A Dipeptidyl peptidase 4 99.7 9.9E-16 3.4E-20 164.1 23.3 200 170-405 17-296 (740)
162 3fvz_A Peptidyl-glycine alpha- 99.7 1.4E-13 4.8E-18 132.6 34.4 244 169-470 23-323 (329)
163 3scy_A Hypothetical bacterial 99.7 3.3E-14 1.1E-18 138.6 29.8 218 165-403 95-337 (361)
164 1q7f_A NHL, brain tumor CG1071 99.7 5.6E-14 1.9E-18 132.2 29.5 240 168-469 28-280 (286)
165 3pe7_A Oligogalacturonate lyas 99.7 1.9E-14 6.4E-19 141.4 24.9 246 167-468 78-381 (388)
166 3pe7_A Oligogalacturonate lyas 99.6 2E-14 6.9E-19 141.2 22.2 208 163-405 24-275 (388)
167 3e5z_A Putative gluconolactona 99.6 3.2E-13 1.1E-17 127.8 28.9 240 164-468 22-283 (296)
168 4a5s_A Dipeptidyl peptidase 4 99.6 1.1E-13 3.9E-18 148.1 28.8 201 173-404 65-354 (740)
169 1jof_A Carboxy-CIS,CIS-muconat 99.6 4.4E-14 1.5E-18 138.1 22.1 206 170-404 83-342 (365)
170 3azo_A Aminopeptidase; POP fam 99.6 9.3E-14 3.2E-18 146.7 26.2 248 164-468 18-322 (662)
171 2dg1_A DRP35, lactonase; beta 99.6 4.9E-12 1.7E-16 121.5 34.7 249 164-468 39-313 (333)
172 3azo_A Aminopeptidase; POP fam 99.6 1.1E-13 3.6E-18 146.3 24.8 195 174-402 81-322 (662)
173 2xdw_A Prolyl endopeptidase; a 99.6 7E-13 2.4E-17 141.3 27.1 249 168-468 123-413 (710)
174 3c5m_A Oligogalacturonate lyas 99.6 3.3E-13 1.1E-17 132.6 21.9 233 173-468 84-381 (396)
175 1rwi_B Serine/threonine-protei 99.5 2.2E-12 7.7E-17 119.8 24.8 239 171-470 25-265 (270)
176 2dg1_A DRP35, lactonase; beta 99.5 1.3E-12 4.4E-17 125.6 20.3 243 170-467 6-261 (333)
177 1q7f_A NHL, brain tumor CG1071 99.5 1E-11 3.6E-16 116.5 26.0 199 168-404 75-281 (286)
178 2oiz_A Aromatic amine dehydrog 99.5 1.1E-11 3.8E-16 120.8 26.1 247 164-470 46-335 (361)
179 3c5m_A Oligogalacturonate lyas 99.5 2.1E-13 7.3E-18 134.0 13.9 196 172-404 38-274 (396)
180 2gop_A Trilobed protease; beta 99.5 3.9E-12 1.3E-16 122.8 22.2 222 170-467 59-329 (347)
181 3fvz_A Peptidyl-glycine alpha- 99.5 7E-12 2.4E-16 120.6 23.6 207 167-404 88-323 (329)
182 2bkl_A Prolyl endopeptidase; m 99.5 3.9E-12 1.3E-16 135.2 22.8 247 167-468 118-396 (695)
183 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 7.3E-11 2.5E-15 112.1 28.7 248 166-468 14-298 (314)
184 1qks_A Cytochrome CD1 nitrite 99.5 3.2E-10 1.1E-14 116.6 35.3 259 167-470 194-478 (567)
185 2z2n_A Virginiamycin B lyase; 99.4 1.5E-10 5E-15 108.9 30.1 243 164-467 9-253 (299)
186 2z2n_A Virginiamycin B lyase; 99.4 3.4E-10 1.2E-14 106.3 31.7 241 168-469 55-295 (299)
187 3g4e_A Regucalcin; six bladed 99.4 3.4E-10 1.1E-14 107.1 31.3 242 167-461 10-264 (297)
188 2xdw_A Prolyl endopeptidase; a 99.4 6.6E-11 2.3E-15 126.0 28.3 204 172-405 173-416 (710)
189 2oiz_A Aromatic amine dehydrog 99.4 1.4E-10 4.8E-15 113.0 27.1 226 170-451 108-360 (361)
190 1xip_A Nucleoporin NUP159; bet 99.4 1.2E-11 4E-16 120.4 17.4 181 171-389 39-230 (388)
191 2gop_A Trilobed protease; beta 99.4 3.2E-11 1.1E-15 116.3 20.1 218 170-468 15-290 (347)
192 1yr2_A Prolyl oligopeptidase; 99.4 7.2E-11 2.5E-15 126.3 24.6 247 168-468 161-440 (741)
193 3dsm_A Uncharacterized protein 99.3 2E-10 6.9E-15 110.3 24.2 239 171-468 45-301 (328)
194 2ghs_A AGR_C_1268P; regucalcin 99.3 2.3E-09 7.7E-14 102.8 31.5 234 171-461 50-294 (326)
195 2bkl_A Prolyl endopeptidase; m 99.3 1.1E-10 3.9E-15 123.9 24.0 201 231-467 118-347 (695)
196 1rwi_B Serine/threonine-protei 99.3 1.8E-10 6.1E-15 106.8 22.2 200 168-404 65-265 (270)
197 1xip_A Nucleoporin NUP159; bet 99.3 2.4E-11 8.3E-16 118.2 16.6 187 235-457 39-232 (388)
198 2qc5_A Streptogramin B lactona 99.3 2.5E-09 8.5E-14 100.4 29.8 242 166-467 16-258 (300)
199 3e5z_A Putative gluconolactona 99.3 7.4E-10 2.5E-14 104.4 25.9 199 164-404 63-287 (296)
200 1qks_A Cytochrome CD1 nitrite 99.3 1.9E-09 6.6E-14 110.9 30.1 191 183-405 168-375 (567)
201 3no2_A Uncharacterized protein 99.3 9.9E-10 3.4E-14 102.7 24.9 182 183-405 6-197 (276)
202 2qc5_A Streptogramin B lactona 99.3 5.2E-09 1.8E-13 98.2 29.7 239 168-467 60-298 (300)
203 3hrp_A Uncharacterized protein 99.3 3.9E-09 1.3E-13 104.5 29.2 201 170-404 131-355 (409)
204 3iuj_A Prolyl endopeptidase; h 99.3 2.5E-10 8.6E-15 121.1 20.8 206 168-403 127-359 (693)
205 3no2_A Uncharacterized protein 99.2 5.4E-09 1.9E-13 97.6 26.7 193 163-391 29-231 (276)
206 3dsm_A Uncharacterized protein 99.2 2.3E-09 7.8E-14 102.9 24.5 199 167-402 81-301 (328)
207 3dr2_A Exported gluconolactona 99.2 2.9E-09 1E-13 100.9 24.9 237 164-463 39-300 (305)
208 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 6.3E-09 2.1E-13 98.5 21.9 205 168-404 69-300 (314)
209 1yr2_A Prolyl oligopeptidase; 99.1 1.2E-08 4.2E-13 109.0 26.4 199 172-404 211-442 (741)
210 3g4e_A Regucalcin; six bladed 99.1 1.3E-08 4.5E-13 96.0 22.0 195 166-392 50-262 (297)
211 2mad_H Methylamine dehydrogena 99.1 1.7E-07 5.8E-12 91.4 29.8 237 174-470 70-351 (373)
212 2ece_A 462AA long hypothetical 99.1 2.9E-07 9.8E-12 90.0 30.1 233 179-457 93-399 (462)
213 3hrp_A Uncharacterized protein 99.0 2E-07 6.9E-12 92.1 28.2 194 175-401 176-408 (409)
214 2ghs_A AGR_C_1268P; regucalcin 99.0 2.7E-07 9.2E-12 88.3 25.3 188 167-393 87-293 (326)
215 2qe8_A Uncharacterized protein 98.9 3.8E-08 1.3E-12 94.9 18.6 245 170-459 17-310 (343)
216 3sjl_D Methylamine dehydrogena 98.9 4.2E-07 1.4E-11 88.0 24.3 238 174-470 82-364 (386)
217 2mad_H Methylamine dehydrogena 98.9 2.4E-06 8.2E-11 83.2 30.1 201 172-405 127-352 (373)
218 3iuj_A Prolyl endopeptidase; h 98.9 5.6E-08 1.9E-12 103.0 19.7 200 232-467 127-357 (693)
219 3c75_H MADH, methylamine dehyd 98.8 5.3E-07 1.8E-11 88.9 21.3 114 180-320 83-216 (426)
220 3dr2_A Exported gluconolactona 98.8 2.2E-07 7.7E-12 87.8 17.7 203 224-467 35-265 (305)
221 1npe_A Nidogen, entactin; glyc 98.8 1.9E-05 6.3E-10 72.8 29.7 201 170-404 36-239 (267)
222 1mda_H Methylamine dehydrogena 98.8 1.3E-06 4.3E-11 84.6 22.4 203 174-405 69-348 (368)
223 2hz6_A Endoplasmic reticulum t 98.7 4.4E-09 1.5E-13 102.7 2.7 180 183-405 10-194 (369)
224 3sjl_D Methylamine dehydrogena 98.7 3.7E-06 1.3E-10 81.4 22.3 203 171-405 138-365 (386)
225 3c75_H MADH, methylamine dehyd 98.7 4.3E-06 1.5E-10 82.3 23.1 202 174-405 122-404 (426)
226 1mda_H Methylamine dehydrogena 98.6 6.5E-07 2.2E-11 86.7 15.5 104 183-312 33-158 (368)
227 1npe_A Nidogen, entactin; glyc 98.6 4.7E-05 1.6E-09 70.1 27.2 161 234-404 36-199 (267)
228 2iwa_A Glutamine cyclotransfer 98.6 2.1E-05 7E-10 72.1 23.5 204 163-404 12-238 (266)
229 2qe8_A Uncharacterized protein 98.6 3.6E-06 1.2E-10 80.9 19.3 205 167-400 64-318 (343)
230 2ece_A 462AA long hypothetical 98.5 2.1E-05 7.1E-10 77.0 23.3 193 171-391 139-399 (462)
231 2fp8_A Strictosidine synthase; 98.5 6.9E-05 2.3E-09 71.1 25.7 220 170-402 19-268 (322)
232 1kb0_A Quinohemoprotein alcoho 98.4 7.8E-05 2.7E-09 78.4 25.5 156 238-405 247-509 (677)
233 2iwa_A Glutamine cyclotransfer 98.4 0.00012 4.2E-09 67.0 23.4 207 225-471 11-239 (266)
234 3nol_A Glutamine cyclotransfer 98.4 3.9E-05 1.3E-09 69.6 19.4 190 163-391 34-244 (262)
235 3nok_A Glutaminyl cyclase; bet 98.4 8.2E-05 2.8E-09 67.5 21.2 189 163-391 46-254 (268)
236 2hz6_A Endoplasmic reticulum t 98.3 2.8E-07 9.5E-12 89.8 5.0 166 170-376 38-207 (369)
237 1yiq_A Quinohemoprotein alcoho 98.3 0.00013 4.3E-09 77.0 25.3 159 238-405 239-507 (689)
238 3v64_C Agrin; beta propeller, 98.3 0.00086 2.9E-08 64.4 29.2 161 234-404 73-235 (349)
239 2p4o_A Hypothetical protein; p 98.3 0.00046 1.6E-08 64.9 26.6 237 164-459 26-278 (306)
240 3v65_B Low-density lipoprotein 98.3 0.00059 2E-08 66.5 28.1 163 233-404 115-278 (386)
241 1yiq_A Quinohemoprotein alcoho 98.3 7.4E-05 2.5E-09 78.8 22.7 152 183-358 122-340 (689)
242 3hxj_A Pyrrolo-quinoline quino 98.3 4.6E-05 1.6E-09 72.1 19.4 174 184-401 109-282 (330)
243 3v64_C Agrin; beta propeller, 98.3 0.0017 5.8E-08 62.3 30.0 205 167-404 70-276 (349)
244 3v65_B Low-density lipoprotein 98.3 0.00095 3.2E-08 65.0 28.3 205 168-404 114-319 (386)
245 1ijq_A LDL receptor, low-densi 98.3 0.0014 4.9E-08 61.8 28.8 163 233-404 29-196 (316)
246 1fwx_A Nitrous oxide reductase 98.2 3.8E-05 1.3E-09 77.7 17.1 201 173-403 88-361 (595)
247 3qqz_A Putative uncharacterize 98.2 0.0023 7.9E-08 58.1 27.4 202 167-400 24-250 (255)
248 1ijq_A LDL receptor, low-densi 98.2 0.003 1E-07 59.6 29.4 213 166-405 26-240 (316)
249 1kb0_A Quinohemoprotein alcoho 98.2 8.1E-05 2.8E-09 78.3 20.0 157 184-368 130-354 (677)
250 3mbr_X Glutamine cyclotransfer 98.2 0.00034 1.1E-08 62.9 20.7 190 163-392 12-224 (243)
251 3p5b_L Low density lipoprotein 98.2 0.0029 9.9E-08 61.9 29.3 167 232-404 110-278 (400)
252 3nol_A Glutamine cyclotransfer 98.1 0.00026 9E-09 64.1 18.0 203 235-468 44-253 (262)
253 3hxj_A Pyrrolo-quinoline quino 98.1 4.6E-05 1.6E-09 72.1 13.9 135 247-401 108-242 (330)
254 3qqz_A Putative uncharacterize 98.1 0.0062 2.1E-07 55.3 27.1 207 228-468 21-250 (255)
255 4a2l_A BT_4663, two-component 98.0 0.0065 2.2E-07 65.1 31.7 247 169-468 214-479 (795)
256 3mbr_X Glutamine cyclotransfer 98.0 0.00091 3.1E-08 60.0 20.4 212 225-468 11-232 (243)
257 3nok_A Glutaminyl cyclase; bet 98.0 0.0005 1.7E-08 62.3 18.8 199 235-466 56-261 (268)
258 3q7m_A Lipoprotein YFGL, BAMB; 98.0 0.003 1E-07 60.9 25.9 144 248-405 190-339 (376)
259 3q7m_A Lipoprotein YFGL, BAMB; 98.0 0.0045 1.5E-07 59.7 27.0 139 248-405 105-260 (376)
260 3sov_A LRP-6, low-density lipo 98.0 0.0046 1.6E-07 58.4 26.0 163 234-404 35-198 (318)
261 4a2l_A BT_4663, two-component 98.0 0.019 6.4E-07 61.5 33.5 247 170-468 263-525 (795)
262 2xe4_A Oligopeptidase B; hydro 98.0 0.00059 2E-08 72.7 21.4 198 171-401 175-398 (751)
263 3sov_A LRP-6, low-density lipo 98.0 0.013 4.4E-07 55.2 28.3 205 170-405 35-240 (318)
264 2p4o_A Hypothetical protein; p 97.9 0.0023 7.8E-08 60.0 22.8 195 234-467 32-240 (306)
265 3m0c_C LDL receptor, low-densi 97.9 0.0072 2.5E-07 64.3 28.9 168 232-404 422-590 (791)
266 1fwx_A Nitrous oxide reductase 97.9 0.00033 1.1E-08 70.9 17.2 121 282-404 278-432 (595)
267 3p5b_L Low density lipoprotein 97.9 0.023 7.8E-07 55.4 31.3 215 165-405 107-322 (400)
268 3tc9_A Hypothetical hydrolase; 97.9 0.0062 2.1E-07 60.1 25.8 158 171-356 138-301 (430)
269 2fp8_A Strictosidine synthase; 97.9 0.0018 6.1E-08 61.2 21.1 160 234-404 19-217 (322)
270 2xe4_A Oligopeptidase B; hydro 97.9 0.0016 5.6E-08 69.3 22.6 192 235-461 175-389 (751)
271 3m0c_C LDL receptor, low-densi 97.8 0.018 6.1E-07 61.3 29.9 212 166-405 420-634 (791)
272 1kv9_A Type II quinohemoprotei 97.7 0.0023 7.9E-08 67.1 20.8 72 285-358 234-335 (668)
273 4hw6_A Hypothetical protein, I 97.7 0.02 6.9E-07 56.5 26.4 202 171-401 140-372 (433)
274 3v9f_A Two-component system se 97.7 0.039 1.4E-06 58.8 30.3 248 170-467 258-522 (781)
275 1k3i_A Galactose oxidase precu 97.7 0.0027 9.4E-08 66.4 20.5 200 173-404 189-442 (656)
276 1n7d_A LDL receptor, low-densi 97.5 0.00047 1.6E-08 72.7 12.4 165 234-404 406-572 (699)
277 3v9f_A Two-component system se 97.5 0.057 1.9E-06 57.6 28.6 232 170-467 313-566 (781)
278 3kya_A Putative phosphatase; s 97.5 0.075 2.6E-06 53.0 27.1 207 171-401 140-408 (496)
279 1kv9_A Type II quinohemoprotei 97.5 0.005 1.7E-07 64.5 19.5 157 238-405 234-490 (668)
280 2xbg_A YCF48-like protein; pho 97.3 0.073 2.5E-06 50.2 23.4 153 231-401 160-320 (327)
281 4a0p_A LRP6, LRP-6, low-densit 97.3 0.21 7.2E-06 51.6 29.0 161 234-404 37-198 (628)
282 1flg_A Protein (quinoprotein e 97.3 0.082 2.8E-06 54.2 25.1 54 346-405 465-518 (582)
283 4hw6_A Hypothetical protein, I 97.3 0.016 5.4E-07 57.2 19.0 158 235-403 140-304 (433)
284 2ism_A Putative oxidoreductase 97.3 0.043 1.5E-06 52.4 21.6 243 170-460 31-336 (352)
285 2ad6_A Methanol dehydrogenase 97.3 0.028 9.7E-07 57.6 21.3 55 345-405 442-496 (571)
286 3a9g_A Putative uncharacterize 97.2 0.092 3.2E-06 50.1 23.4 251 169-468 28-349 (354)
287 3tc9_A Hypothetical hydrolase; 97.2 0.0056 1.9E-07 60.4 15.2 158 235-403 138-301 (430)
288 1n7d_A LDL receptor, low-densi 97.2 0.0013 4.6E-08 69.2 11.1 207 170-404 406-615 (699)
289 1k3i_A Galactose oxidase precu 97.2 0.0042 1.4E-07 65.0 14.5 202 170-404 243-498 (656)
290 4a0p_A LRP6, LRP-6, low-densit 97.2 0.29 1E-05 50.6 31.1 203 169-405 36-239 (628)
291 3s94_A LRP-6, low-density lipo 97.2 0.12 4.1E-06 53.4 24.7 163 233-404 39-203 (619)
292 2ad6_A Methanol dehydrogenase 97.1 0.066 2.2E-06 54.8 22.3 59 304-368 273-343 (571)
293 2p9w_A MAL S 1 allergenic prot 97.1 0.051 1.8E-06 50.8 19.4 166 228-403 7-215 (334)
294 3s94_A LRP-6, low-density lipo 97.0 0.2 6.8E-06 51.8 24.9 208 167-405 37-245 (619)
295 3amr_A 3-phytase; beta-propell 97.0 0.12 4E-06 48.8 21.0 202 238-468 30-262 (355)
296 2p9w_A MAL S 1 allergenic prot 97.0 0.048 1.6E-06 51.1 17.5 206 169-403 12-265 (334)
297 3sre_A PON1, serum paraoxonase 96.9 0.13 4.3E-06 49.1 20.8 204 164-393 43-287 (355)
298 1w6s_A Methanol dehydrogenase 96.8 0.22 7.4E-06 51.2 22.9 55 345-405 451-505 (599)
299 3amr_A 3-phytase; beta-propell 96.8 0.27 9.2E-06 46.4 21.2 194 182-402 41-262 (355)
300 2g8s_A Glucose/sorbosone dehyd 96.7 0.42 1.4E-05 45.5 22.4 254 170-468 18-351 (353)
301 3kya_A Putative phosphatase; s 96.6 0.039 1.3E-06 55.0 15.0 164 235-402 140-340 (496)
302 3sre_A PON1, serum paraoxonase 96.6 0.13 4.4E-06 49.0 18.0 159 235-403 51-252 (355)
303 3pbp_A Nucleoporin NUP82; beta 96.6 0.19 6.5E-06 48.6 18.9 144 248-398 34-207 (452)
304 2xbg_A YCF48-like protein; pho 96.5 0.36 1.2E-05 45.3 20.8 160 165-354 158-320 (327)
305 2xzh_A Clathrin heavy chain 1; 96.5 0.52 1.8E-05 43.9 25.2 203 169-405 106-334 (365)
306 3pbp_A Nucleoporin NUP82; beta 96.4 0.44 1.5E-05 46.1 20.3 114 235-352 67-208 (452)
307 3ei3_A DNA damage-binding prot 96.3 1.8 6.1E-05 48.1 27.6 144 247-404 845-1000(1158)
308 1bpo_A Protein (clathrin); cla 96.3 0.9 3.1E-05 44.1 26.5 203 169-405 105-333 (494)
309 1flg_A Protein (quinoprotein e 96.2 0.26 8.8E-06 50.5 18.6 84 302-392 465-549 (582)
310 3ei3_A DNA damage-binding prot 96.0 0.52 1.8E-05 52.4 21.3 159 164-352 880-1058(1158)
311 1w6s_A Methanol dehydrogenase 95.9 0.33 1.1E-05 49.8 17.8 142 249-405 124-344 (599)
312 2ism_A Putative oxidoreductase 95.4 0.36 1.2E-05 45.9 15.0 156 233-395 30-225 (352)
313 2vpj_A Kelch-like protein 12; 95.2 0.87 3E-05 41.7 16.8 144 248-404 115-279 (301)
314 3a9g_A Putative uncharacterize 95.2 1.1 3.8E-05 42.5 17.7 154 233-392 28-217 (354)
315 2g8s_A Glucose/sorbosone dehyd 94.9 1.3 4.3E-05 42.1 17.3 152 234-389 18-214 (353)
316 3das_A Putative oxidoreductase 94.9 2.6 9E-05 39.7 24.1 247 167-460 29-329 (347)
317 1tl2_A L10, protein (tachylect 94.6 0.95 3.3E-05 39.6 13.9 139 248-398 6-158 (236)
318 1xi4_A Clathrin heavy chain; a 94.3 7.5 0.00026 43.6 23.0 197 177-406 73-292 (1630)
319 1cru_A Protein (soluble quinop 94.2 3 0.0001 41.0 18.7 110 281-392 27-163 (454)
320 3das_A Putative oxidoreductase 93.8 4.5 0.00015 38.1 19.1 158 228-390 26-219 (347)
321 1zgk_A Kelch-like ECH-associat 93.6 3.2 0.00011 38.0 16.9 144 248-404 124-288 (308)
322 1xi4_A Clathrin heavy chain; a 93.6 4.2 0.00014 45.6 19.4 199 170-402 106-330 (1630)
323 3ii7_A Kelch-like protein 7; p 93.6 1.5 5.2E-05 40.2 14.5 142 248-404 104-273 (306)
324 1tl2_A L10, protein (tachylect 93.5 2.2 7.6E-05 37.3 13.9 158 164-349 33-203 (236)
325 2xzh_A Clathrin heavy chain 1; 93.3 5.1 0.00018 37.3 29.2 195 177-405 74-292 (365)
326 3ii7_A Kelch-like protein 7; p 93.2 4.9 0.00017 36.7 17.3 144 248-404 58-226 (306)
327 2xn4_A Kelch-like protein 2; s 93.1 1.4 4.7E-05 40.4 13.3 144 248-404 111-277 (302)
328 2vpj_A Kelch-like protein 12; 93.0 3.1 0.0001 37.9 15.5 145 248-404 65-232 (301)
329 1bpo_A Protein (clathrin); cla 92.7 7.9 0.00027 37.6 28.8 196 176-405 72-291 (494)
330 1cru_A Protein (soluble quinop 91.9 10 0.00035 37.2 22.1 116 228-345 21-163 (454)
331 4asc_A Kelch repeat and BTB do 91.0 5.7 0.0002 36.4 14.9 102 295-404 101-222 (315)
332 1zgk_A Kelch-like ECH-associat 90.5 5.1 0.00018 36.6 14.0 136 256-404 90-241 (308)
333 3ott_A Two-component system se 90.1 20 0.0007 37.5 26.3 192 170-404 63-261 (758)
334 2xn4_A Kelch-like protein 2; s 89.8 4.5 0.00015 36.8 13.0 144 248-404 64-230 (302)
335 2woz_A Kelch repeat and BTB do 88.7 12 0.00042 34.2 15.3 133 258-405 80-233 (318)
336 2woz_A Kelch repeat and BTB do 87.8 16 0.00054 33.4 15.3 141 248-404 112-288 (318)
337 4asc_A Kelch repeat and BTB do 87.6 16 0.00056 33.2 19.2 136 256-404 117-278 (315)
338 3b7f_A Glycosyl hydrolase, BNR 87.5 20 0.00068 34.0 20.5 161 234-398 177-367 (394)
339 3ott_A Two-component system se 87.4 31 0.001 36.1 26.6 228 169-468 21-259 (758)
340 2zwa_A Leucine carboxyl methyl 87.0 21 0.00071 37.1 17.2 155 244-405 451-637 (695)
341 3s25_A Hypothetical 7-bladed b 86.8 19 0.00064 33.0 18.3 141 238-403 57-216 (302)
342 1sqj_A OXG-RCBH, oligoxylogluc 86.6 17 0.0006 38.4 16.5 162 233-397 14-195 (789)
343 2wg3_C Hedgehog-interacting pr 86.1 22 0.00075 34.9 15.8 112 234-346 14-159 (463)
344 2uvk_A YJHT; unknown function, 84.7 8.6 0.0003 35.9 11.9 53 348-405 286-344 (357)
345 2zwa_A Leucine carboxyl methyl 83.0 45 0.0015 34.6 17.4 111 244-358 500-637 (695)
346 3b7f_A Glycosyl hydrolase, BNR 82.1 35 0.0012 32.3 21.4 160 233-398 54-257 (394)
347 2be1_A Serine/threonine-protei 82.0 14 0.00049 34.5 11.9 58 295-353 113-181 (339)
348 1sqj_A OXG-RCBH, oligoxylogluc 80.6 61 0.0021 34.1 21.3 157 169-346 14-190 (789)
349 2uvk_A YJHT; unknown function, 79.2 15 0.00052 34.1 11.4 19 183-201 21-40 (357)
350 3qhy_B Beta-lactamase inhibito 75.0 47 0.0016 29.9 19.2 184 171-404 25-208 (282)
351 2cn3_A Xyloglucanase, beta-1,4 72.0 98 0.0034 32.2 16.6 111 235-346 24-153 (737)
352 2wg3_C Hedgehog-interacting pr 70.1 84 0.0029 30.6 27.9 30 170-200 14-44 (463)
353 2be1_A Serine/threonine-protei 63.7 14 0.00049 34.5 6.8 112 248-369 12-139 (339)
354 3a0f_A Xyloglucanase; beta-pro 62.3 1.5E+02 0.0053 30.9 17.0 160 232-394 19-203 (763)
355 3a0f_A Xyloglucanase; beta-pro 62.3 1.5E+02 0.0053 30.9 17.1 170 163-347 14-203 (763)
356 3sbq_A Nitrous-oxide reductase 60.3 31 0.001 34.7 8.6 97 304-403 299-408 (638)
357 3qhy_B Beta-lactamase inhibito 59.7 97 0.0033 27.7 16.8 184 171-404 64-247 (282)
358 2cn3_A Xyloglucanase, beta-1,4 51.7 2.2E+02 0.0076 29.4 24.5 112 171-301 24-152 (737)
359 4gq2_M Nucleoporin NUP120; bet 50.2 1.8E+02 0.0063 31.3 13.6 33 235-268 237-269 (950)
360 4gq2_M Nucleoporin NUP120; bet 50.2 65 0.0022 34.8 10.1 37 326-367 237-273 (950)
361 3sbq_A Nitrous-oxide reductase 50.2 44 0.0015 33.6 7.8 74 282-356 324-408 (638)
362 3uc1_A DNA gyrase subunit A; D 36.9 2.5E+02 0.0085 25.7 21.1 155 183-356 110-279 (327)
363 3s25_A Hypothetical 7-bladed b 36.5 2.4E+02 0.0082 25.4 15.4 176 176-400 110-290 (302)
364 2loj_A Putative cytoplasmic pr 22.7 93 0.0032 20.8 3.4 24 163-187 39-62 (63)
365 3f7f_A Nucleoporin NUP120; nuc 21.9 1.3E+02 0.0045 31.1 6.1 36 326-368 223-258 (729)
366 4a9v_A PHOX; hydrolase, beta-p 21.8 3.6E+02 0.012 27.1 9.1 65 281-347 476-553 (592)
367 4hvt_A Ritya.17583.B, post-pro 21.7 6.7E+02 0.023 25.8 18.9 205 237-468 132-380 (711)
No 1
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.8e-53 Score=428.84 Aligned_cols=378 Identities=31% Similarity=0.541 Sum_probs=297.9
Q ss_pred CCeeecCCcccCCCCceeeeChhHHHhhhcccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEee
Q 039302 37 PTKVWQPGVDKLEEGEELQCDPTAYNSLHAFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVS 116 (479)
Q Consensus 37 ~~~~~~~~~~~~~~~~~l~~d~~~Y~~~~~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~ 116 (479)
+.++|+...+ +||+|+|++.++||||+|||+|+..+..+.+|| .+++++|||+.+ ..|+|+|+++.
T Consensus 24 ~~~~wk~n~~------------~~y~~~~~~~l~wp~l~~~~~p~~~~~~~~~~~-~~~~~~GT~t~~-~~n~i~i~~~~ 89 (430)
T 2xyi_A 24 EYKIWKKNTP------------FLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYS-VHRLILGTHTSD-EQNHLLIASVQ 89 (430)
T ss_dssp HHHHHHHHHH------------HHEEEEEEEECSSCCSCEEECSCCEECTTCSCE-EEEEEEECCCSS-SCEEEEEEEEE
T ss_pred HHhhHhhCCh------------HHHHHHhhcCCCCCceEEEECcccccccCCCcc-eEEEEEEEcCCC-CCCEEEEEEEE
Confidence 3568887776 999999999999999999999999888888898 699999999998 99999999996
Q ss_pred ecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCC--CCCcee-EEEEecCCcceeEEEEecCCCcEEEEEeCCce
Q 039302 117 NISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGG--SGTPIL-QLRKVAHQGCVNRIRAMSQNPHICASWADTGH 193 (479)
Q Consensus 117 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--~~~p~~-~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~ 193 (479)
++.... +. ++.++ |+++++.++ ...+.+ ....++|.+.|++++|+|+++.+||+++.+|.
T Consensus 90 -lp~~~~----------~~--~~~~~----d~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~ 152 (430)
T 2xyi_A 90 -LPSEDA----------QF--DGSHY----DNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSD 152 (430)
T ss_dssp -EC------------------------------------------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSC
T ss_pred -CCCCcc----------cc--ccccc----cccccccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCc
Confidence 432211 00 11111 111111111 124444 46789999999999999986689999999999
Q ss_pred EEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccc---
Q 039302 194 VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN--- 270 (479)
Q Consensus 194 V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~--- 270 (479)
|+||++......... .....++..+.+|...|++|+|+|.+.++|++|+.||.|++|++.......
T Consensus 153 V~vwd~~~~~~~~~~-----------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 221 (430)
T 2xyi_A 153 VLVFDYTKHPSKPEP-----------SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVI 221 (430)
T ss_dssp EEEEEGGGSCSSCCT-----------TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEE
T ss_pred EEEEECCCcccccCc-----------cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCcee
Confidence 999999763222110 012577888999999999999999987799999999999999998743211
Q ss_pred cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe
Q 039302 271 VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALMSFKAHNADVNVISWNRLASCLLASGSDDGT 348 (479)
Q Consensus 271 ~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~--~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~ 348 (479)
.....+.+|...|.+++|+|.+..+|++++.||.|++||+++.. .++..+..|...|++++|+|++..+|++|+.||.
T Consensus 222 ~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~ 301 (430)
T 2xyi_A 222 DAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKT 301 (430)
T ss_dssp ECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSE
T ss_pred ccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCe
Confidence 11244668999999999999766699999999999999999873 3667778999999999999999779999999999
Q ss_pred EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCC
Q 039302 349 FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLP 428 (479)
Q Consensus 349 i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p 428 (479)
|++||++.... ++..+..|..+|++++|+|++..+|++++.|++|+|||+.......... .....+
T Consensus 302 v~vwd~~~~~~---~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------~~~~~~ 367 (430)
T 2xyi_A 302 VALWDLRNLKL---KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE-----------DAEDGP 367 (430)
T ss_dssp EEEEETTCTTS---CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH-----------HHHHCC
T ss_pred EEEEeCCCCCC---CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc-----------ccccCC
Confidence 99999998654 7889999999999999999887899999999999999998743210000 011456
Q ss_pred CceEEeecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 429 PQLLFIHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 429 ~~l~~~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+++++.|.+|. .|++++|+|+++++|++++.|+ |+||++...
T Consensus 368 ~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 368 PELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 78899998877 5999999999988999999999 999999764
No 2
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.6e-40 Score=321.55 Aligned_cols=248 Identities=24% Similarity=0.356 Sum_probs=209.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCc----EEecCCCCceEEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL----VKFGGHKDEGYAI 239 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~l 239 (479)
....|...|++++|+|++ .|++|+.||+|+|||+.. .+.+ ..+.+|...|++|
T Consensus 77 ~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~---------------------~~~~~~~~~~~~~H~~~V~~v 133 (344)
T 4gqb_B 77 AGVQTEAGVADLTWVGER--GILVASDSGAVELWELDE---------------------NETLIVSKFCKYEHDDIVSTV 133 (344)
T ss_dssp EEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECT---------------------TSSCEEEEEEEECCSSCEEEE
T ss_pred eeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccC---------------------CCceeEeeccccCCCCCEEEE
Confidence 455678899999999986 566889999999999987 2322 3355899999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|+|++. +|++|+.||+|++||+.++.. ...+.+|...|++++|+|++..+|++|+.||+|+|||+++++ +...
T Consensus 134 ~~spdg~-~l~sgs~d~~i~iwd~~~~~~----~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~-~~~~ 207 (344)
T 4gqb_B 134 SVLSSGT-QAVSGSKDICIKVWDLAQQVV----LSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK-PASQ 207 (344)
T ss_dssp EECTTSS-EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS-CEEE
T ss_pred EECCCCC-EEEEEeCCCeEEEEECCCCcE----EEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc-eeee
Confidence 9999998 999999999999999987544 245789999999999999998799999999999999999886 4444
Q ss_pred E--ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 320 F--KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 320 ~--~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+ ..|...+++++|+|.+..+|++|+.||.|+|||+++.+ ++..+.+|...|++++|+|++..+|++|+.|++|+
T Consensus 208 ~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~----~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~ 283 (344)
T 4gqb_B 208 IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS----CVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLA 283 (344)
T ss_dssp CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEE
T ss_pred eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc----EEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEE
Confidence 4 45667899999999887899999999999999999988 78999999999999999998767899999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
|||++.. +++....+...|++++|+|+++.+|+|++.|+ |++|++..
T Consensus 284 vwd~~~~-------------------------~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 284 VLDSSLS-------------------------ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp EECTTCC-------------------------EEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred EEECCCC-------------------------cEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 9999876 33333333347999999999988999999888 99998754
No 3
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.2e-39 Score=323.96 Aligned_cols=246 Identities=21% Similarity=0.345 Sum_probs=216.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. .+++.++.+|...|.+++|+
T Consensus 144 ~~l~~h~~~V~~v~~~~~~-~~l~sgs~D~~i~iwd~~~---------------------~~~~~~~~~h~~~V~~v~~~ 201 (410)
T 1vyh_C 144 RTLKGHTDSVQDISFDHSG-KLLASCSADMTIKLWDFQG---------------------FECIRTMHGHDHNVSSVSIM 201 (410)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCCCEEETTS---------------------SCEEECCCCCSSCEEEEEEC
T ss_pred EEEeccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEeCCC---------------------CceeEEEcCCCCCEEEEEEe
Confidence 4677999999999999998 7999999999999999976 56778889999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|++. +|++|+.|++|++||+.++.. ...+.+|...|.++.|+|++. +|++|+.||+|++||+++.. +...+..
T Consensus 202 p~~~-~l~s~s~D~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~vwd~~~~~-~~~~~~~ 274 (410)
T 1vyh_C 202 PNGD-HIVSASRDKTIKMWEVQTGYC----VKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVRVWVVATKE-CKAELRE 274 (410)
T ss_dssp SSSS-EEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC-EEEEECC
T ss_pred CCCC-EEEEEeCCCeEEEEECCCCcE----EEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEEEEECCCCc-eeeEecC
Confidence 9998 999999999999999987654 245788999999999999998 99999999999999999875 6778889
Q ss_pred CCCCEEEEEEcCCC-------------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 323 HNADVNVISWNRLA-------------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 323 h~~~v~~l~~~p~~-------------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
|...|.+++|+|++ +.+|++|+.||.|++||++++. ++..+.+|...|++++|+|++
T Consensus 275 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~----~~~~~~~h~~~v~~v~~~~~g 350 (410)
T 1vyh_C 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM----CLMTLVGHDNWVRGVLFHSGG 350 (410)
T ss_dssp CSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSS
T ss_pred CCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc----eEEEEECCCCcEEEEEEcCCC
Confidence 99999999999963 2689999999999999999887 889999999999999999955
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-c
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-F 462 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i 462 (479)
.+|++|+.|++|++||+..... ...+..|. ..|++++|+|+++ +|++++.|+ |
T Consensus 351 -~~l~s~s~D~~i~vwd~~~~~~----------------------~~~~~~h~--~~v~~l~~~~~~~-~l~sgs~D~~i 404 (410)
T 1vyh_C 351 -KFILSCADDKTLRVWDYKNKRC----------------------MKTLNAHE--HFVTSLDFHKTAP-YVVTGSVDQTV 404 (410)
T ss_dssp -SCEEEEETTTEEEEECCTTSCC----------------------CEEEECCS--SCEEEEEECSSSS-CEEEEETTSEE
T ss_pred -CEEEEEeCCCeEEEEECCCCce----------------------EEEEcCCC--CcEEEEEEcCCCC-EEEEEeCCCcE
Confidence 8999999999999999977632 12333333 4799999999996 677888888 9
Q ss_pred eEEee
Q 039302 463 NILMP 467 (479)
Q Consensus 463 ~iw~~ 467 (479)
+||++
T Consensus 405 ~vW~~ 409 (410)
T 1vyh_C 405 KVWEC 409 (410)
T ss_dssp EEEC-
T ss_pred EEEeC
Confidence 99985
No 4
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.1e-38 Score=305.75 Aligned_cols=253 Identities=21% Similarity=0.292 Sum_probs=214.7
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+..|...|++++|+|++ .+|++|+.||+|+|||+.. .+.+..+.+|...|.+++
T Consensus 47 ~~~~~~~~~~~v~~~~~~~~~-~~l~s~s~d~~i~vwd~~~---------------------~~~~~~~~~h~~~v~~~~ 104 (304)
T 2ynn_A 47 EVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNT---------------------GEKVVDFEAHPDYIRSIA 104 (304)
T ss_dssp EEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEE
T ss_pred eeEEeeccCCcEEEEEEeCCC-CEEEEECCCCEEEEEECCC---------------------CcEEEEEeCCCCcEEEEE
Confidence 335677899999999999998 7899999999999999987 677888999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|++. +|++|+.||+|++||+.++... ...+.+|...|.+++|+|.+..+|++|+.||+|++||++.........
T Consensus 105 ~~~~~~-~l~sgs~D~~v~lWd~~~~~~~---~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~ 180 (304)
T 2ynn_A 105 VHPTKP-YVLSGSDDLTVKLWNWENNWAL---EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT 180 (304)
T ss_dssp ECSSSS-EEEEEETTSCEEEEEGGGTTEE---EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEE
T ss_pred EcCCCC-EEEEECCCCeEEEEECCCCcch---hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceec
Confidence 999998 9999999999999999765332 245778999999999999655599999999999999999876333334
Q ss_pred ecCCCCEEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 321 KAHNADVNVISWNRL-ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~-~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
..|...+..++|+|. ...+|++|+.|++|++||+++.. ++..+.+|...|++++|+|++ .+|++|+.|++|++|
T Consensus 181 ~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~----~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~Dg~i~iW 255 (304)
T 2ynn_A 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTLKIW 255 (304)
T ss_dssp CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEE
T ss_pred cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCc----cceeeCCCCCCEEEEEECCCC-CEEEEEcCCCeEEEE
Confidence 567788999999873 22799999999999999999887 899999999999999999965 899999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-cCCCCeeeEEEeCCCCc-EEEEEcCCCceEEeeec
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-QGQKDLKELHWHTQVPG-MIVSTAADGFNILMPSN 469 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-~g~~~V~~v~w~p~~~~-ll~s~~~dgi~iw~~~~ 469 (479)
|+.+.+ ++... .+...+.+++|+|.+.. ++++++++|+.+|.+.+
T Consensus 256 d~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 256 NSSTYK-------------------------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp ETTTCC-------------------------EEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred ECCCCc-------------------------eeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 998763 22222 23357999999998854 58999999999988754
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=308.12 Aligned_cols=287 Identities=19% Similarity=0.278 Sum_probs=238.9
Q ss_pred ccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039302 69 IGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDS 148 (479)
Q Consensus 69 ~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (479)
..=+..++.|.|+... ...+|++|. .++.|.||++..
T Consensus 31 H~~~V~~v~~~~~~~~-------~~~~l~tgs-----~D~~v~vW~~~~------------------------------- 67 (321)
T 3ow8_A 31 HDDAIWSVAWGTNKKE-------NSETVVTGS-----LDDLVKVWKWRD------------------------------- 67 (321)
T ss_dssp SSSCEEEEEEC--------------CEEEEEE-----TTSCEEEEEEET-------------------------------
T ss_pred CCCcEEEEEEecCCCC-------CCCEEEEEc-----CCCCEEEEECCC-------------------------------
Confidence 3456678888876321 123577763 688999998831
Q ss_pred ccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE
Q 039302 149 DDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK 228 (479)
Q Consensus 149 ~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479)
....+...+.+|...|++++|++++ .++++++.||+|+|||+.. .+.+..
T Consensus 68 --------~~~~~~~~l~gh~~~v~~~~~~~~~-~~l~s~s~D~~i~lWd~~~---------------------~~~~~~ 117 (321)
T 3ow8_A 68 --------ERLDLQWSLEGHQLGVVSVDISHTL-PIAASSSLDAHIRLWDLEN---------------------GKQIKS 117 (321)
T ss_dssp --------TEEEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTT---------------------TEEEEE
T ss_pred --------CCeeeeeeeccCCCCEEEEEECCCC-CEEEEEeCCCcEEEEECCC---------------------CCEEEE
Confidence 0223445678999999999999998 7899999999999999987 566778
Q ss_pred ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 229 FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
+..|...+.+++|+|++. +|++|+.+|.|++|++.++... ..+..|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 118 ~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~----~~~~~~~~~v~~~~~spdg~-~lasg~~dg~i~iw 191 (321)
T 3ow8_A 118 IDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKE----YSLDTRGKFILSIAYSPDGK-YLASGAIDGIINIF 191 (321)
T ss_dssp EECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEE----EEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEE
T ss_pred EeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCcee----EEecCCCceEEEEEECCCCC-EEEEEcCCCeEEEE
Confidence 888999999999999998 9999999999999999876542 34667888999999999998 99999999999999
Q ss_pred EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
|+++++ .+..+.+|...|++++|+|++ .+|++|+.||.|+|||++... .+..+.+|...|++++|+|++ .+|+
T Consensus 192 d~~~~~-~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~sp~~-~~l~ 264 (321)
T 3ow8_A 192 DIATGK-LLHTLEGHAMPIRSLTFSPDS-QLLVTASDDGYIKIYDVQHAN----LAGTLSGHASWVLNVAFCPDD-THFV 264 (321)
T ss_dssp ETTTTE-EEEEECCCSSCCCEEEECTTS-CEEEEECTTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTS-SEEE
T ss_pred ECCCCc-EEEEEcccCCceeEEEEcCCC-CEEEEEcCCCeEEEEECCCcc----eeEEEcCCCCceEEEEECCCC-CEEE
Confidence 999875 777889999999999999999 899999999999999999877 788999999999999999965 8999
Q ss_pred EEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 389 VSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
+++.|++|+|||+.... .+....+| ..|.+++|+|++. +|++++.|+ |+||+
T Consensus 265 s~s~D~~v~iwd~~~~~-------------------------~~~~~~~h~~~v~~v~~s~~g~-~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 265 SSSSDKSVKVWDVGTRT-------------------------CVHTFFDHQDQVWGVKYNGNGS-KIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEETTSCEEEEETTTTE-------------------------EEEEECCCSSCEEEEEECTTSS-EEEEEETTCCEEEEE
T ss_pred EEeCCCcEEEEeCCCCE-------------------------EEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCeEEEEe
Confidence 99999999999998763 22222223 4799999999986 777888887 99998
Q ss_pred e
Q 039302 467 P 467 (479)
Q Consensus 467 ~ 467 (479)
.
T Consensus 319 ~ 319 (321)
T 3ow8_A 319 C 319 (321)
T ss_dssp C
T ss_pred C
Confidence 5
No 6
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-38 Score=305.48 Aligned_cols=253 Identities=17% Similarity=0.248 Sum_probs=217.2
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. ...+..+.+|...|.+++
T Consensus 5 ~~~~~~~h~~~V~~~~fsp~~-~~l~s~~~dg~v~lWd~~~---------------------~~~~~~~~~~~~~v~~~~ 62 (304)
T 2ynn_A 5 IKKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVELWNYET---------------------QVEVRSIQVTETPVRAGK 62 (304)
T ss_dssp CEEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEEE
T ss_pred eEEeecCCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCC---------------------CceeEEeeccCCcEEEEE
Confidence 345688999999999999999 7888999999999999987 566788899999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|++. +|++|+.|+.|++||+.++... ..+.+|...|++++|+|++. +|++|+.||+|++||+++.......+
T Consensus 63 ~~~~~~-~l~s~s~d~~i~vwd~~~~~~~----~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 63 FIARKN-WIIVGSDDFRIRVFNYNTGEKV----VDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp EEGGGT-EEEEEETTSEEEEEETTTCCEE----EEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred EeCCCC-EEEEECCCCEEEEEECCCCcEE----EEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhh
Confidence 999998 9999999999999999886542 45788999999999999998 99999999999999999876566778
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC-CCCEEEEEeCCCcEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH-EGSTLAVSSADNQLTIW 399 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~-~~~~las~s~Dg~I~iw 399 (479)
.+|...|++++|+|.++.+|++|+.|++|++||++.... ......+|...|..+.|+|. ++.+|++|+.|++|++|
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iW 213 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP---NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC---SEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEE
T ss_pred cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc---cceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEE
Confidence 899999999999996558999999999999999988773 33444567789999999884 34799999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|++... .+....+| ..|..++|+|+++ +|++++.|+ |++|++.+.
T Consensus 214 d~~~~~-------------------------~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 214 DYQTKS-------------------------CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp ETTTTE-------------------------EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTC
T ss_pred eCCCCc-------------------------cceeeCCCCCCEEEEEECCCCC-EEEEEcCCCeEEEEECCCC
Confidence 998763 23333333 4799999999986 788888888 999997653
No 7
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.3e-38 Score=312.36 Aligned_cols=255 Identities=19% Similarity=0.281 Sum_probs=207.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....+|...|++++|+|++ .++ +++.||+|+|||+..... .........+|...|++|+|+
T Consensus 88 ~~~~~~~~~V~~~~~s~d~-~~l-~~s~dg~v~lWd~~~~~~-----------------~~~~~~~~~~h~~~V~~v~~s 148 (357)
T 4g56_B 88 TAGVQTEAGVTDVAWVSEK-GIL-VASDSGAVELWEILEKES-----------------LLVNKFAKYEHDDIVKTLSVF 148 (357)
T ss_dssp SEEEECSSCEEEEEEETTT-EEE-EEETTSCEEEC-------------------------CCCCEEECCCSSCEEEEEEC
T ss_pred cccCCCCCCEEEEEEcCCC-CEE-EEECCCEEEEeeccccce-----------------eEEEeeccCCCCCCEEEEEEC
Confidence 4667899999999999988 555 568899999999976211 012234556899999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce-eeEEe
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA-LMSFK 321 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~-~~~~~ 321 (479)
|++. +|++|+.||.|++||+.++.. ...+.+|...|++++|+|++..+|++++.||+|+|||+++++.. ...+.
T Consensus 149 pdg~-~l~sgs~dg~v~iwd~~~~~~----~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~ 223 (357)
T 4g56_B 149 SDGT-QAVSGGKDFSVKVWDLSQKAV----LKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC 223 (357)
T ss_dssp SSSS-EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT
T ss_pred CCCC-EEEEEeCCCeEEEEECCCCcE----EEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec
Confidence 9998 999999999999999987543 24577899999999999998778999999999999999987632 12235
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.|...+++++|+|+++.+|++|+.|+.|++||+++.+ ++..+.+|...|++++|+|+++.+||+|+.|++|+|||+
T Consensus 224 ~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~ 299 (357)
T 4g56_B 224 ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD----SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDA 299 (357)
T ss_dssp TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG----GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECT
T ss_pred cccccccchhhhhcccceEEEeecccceeEEECCCCc----EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEEC
Confidence 6778899999999987899999999999999999987 788999999999999999987789999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
...+ ++....+...|++|+|+|....+|+|++.|+ |++|++.+-
T Consensus 300 ~~~~-------------------------~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 300 DFSE-------------------------VFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp TSCE-------------------------EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CCCc-------------------------EeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 8762 3333333357999999996556899999988 999998654
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=304.12 Aligned_cols=265 Identities=19% Similarity=0.357 Sum_probs=214.1
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..+|.+.|++++|+|++ .+||+|+.|++|+||++... ....+.++.+|...|.+++|+|+
T Consensus 57 ~~~h~~~v~~~~~sp~g-~~l~s~s~D~~v~iw~~~~~-------------------~~~~~~~~~~h~~~v~~v~~sp~ 116 (345)
T 3fm0_A 57 SEGHQRTVRKVAWSPCG-NYLASASFDATTCIWKKNQD-------------------DFECVTTLEGHENEVKSVAWAPS 116 (345)
T ss_dssp CSSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECCC--------------------EEEEEEECCCSSCEEEEEECTT
T ss_pred ccccCCcEEEEEECCCC-CEEEEEECCCcEEEEEccCC-------------------CeEEEEEccCCCCCceEEEEeCC
Confidence 36899999999999998 78999999999999998762 12456788999999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEecC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFKAH 323 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~~h 323 (479)
+. +|++|+.|+.|++||+........ ...+.+|...|.+++|+|++. +|++|+.|++|++||++.... +...+.+|
T Consensus 117 ~~-~l~s~s~D~~v~iwd~~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h 193 (345)
T 3fm0_A 117 GN-LLATCSRDKSVWVWEVDEEDEYEC-VSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATLEGH 193 (345)
T ss_dssp SS-EEEEEETTSCEEEEEECTTSCEEE-EEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CC-EEEEEECCCeEEEEECCCCCCeEE-EEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEecCC
Confidence 98 999999999999999977543211 234678999999999999998 999999999999999987642 45678899
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-----------CceEEEeec-CCCCeEEEEEeCCCCCEEEEEe
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG-----------DSVVAHFEY-HKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~-----------~~~~~~~~~-h~~~I~~v~~sp~~~~~las~s 391 (479)
...|++++|+|++ .+|++|+.||+|+|||++..... ..++..+.+ |...|++++|+|.+ ..|++++
T Consensus 194 ~~~v~~l~~sp~g-~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~-~~l~s~~ 271 (345)
T 3fm0_A 194 ESTVWSLAFDPSG-QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT-GALATAC 271 (345)
T ss_dssp SSCEEEEEECTTS-SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT-CCEEEEE
T ss_pred CCceEEEEECCCC-CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC-CEEEEEe
Confidence 9999999999999 89999999999999997543211 113445555 89999999999965 8899999
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe--ecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI--HQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~--h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
.|+.|++|++...... ..+...+.. +.+|. .|++++|+|+++.+|+|++.|| |++|++
T Consensus 272 ~d~~i~vw~~~~~~~~------------------~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~ 333 (345)
T 3fm0_A 272 GDDAIRVFQEDPNSDP------------------QQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKY 333 (345)
T ss_dssp TTSCEEEEEECTTSCT------------------TSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEEeCCCCCc------------------ceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEe
Confidence 9999999998765321 111122222 23444 6999999999878999999999 999999
Q ss_pred eccCC
Q 039302 468 SNIQS 472 (479)
Q Consensus 468 ~~~~~ 472 (479)
.+..+
T Consensus 334 ~~~~~ 338 (345)
T 3fm0_A 334 QRPEG 338 (345)
T ss_dssp CC---
T ss_pred cCCCC
Confidence 87654
No 9
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1e-37 Score=297.96 Aligned_cols=262 Identities=18% Similarity=0.287 Sum_probs=210.3
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+||+|+.||+|+|||+... ..+++.++.+|..+|++++|+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g-~~las~s~D~~v~iw~~~~~-------------------~~~~~~~l~gH~~~V~~v~~s 62 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYG-KRMATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWRVDWA 62 (297)
T ss_dssp EECCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEEBCSS-------------------CBCCCEEECCCSSCEEEEEEC
T ss_pred eeccCCcCceEEEEECCCC-CEEEEEeCCCEEEEEecCCC-------------------CcEEEEEEccccCCeEEEEec
Confidence 3567899999999999999 78999999999999999751 146678899999999999998
Q ss_pred CC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCc-ee
Q 039302 243 PV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT--ESDVFASCSVDGNIAIWDTRVGKS-AL 317 (479)
Q Consensus 243 ~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~dg~I~iwD~~~~~~-~~ 317 (479)
+. +. +|++|+.||+|+|||+.++.... ...+.+|...|++++|+|+ +. +|++++.||+|++||++.... ..
T Consensus 63 ~~~~g~-~l~s~s~D~~v~iWd~~~~~~~~--~~~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~~ 138 (297)
T 2pm7_B 63 HPKFGT-ILASCSYDGKVMIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTSP 138 (297)
T ss_dssp CGGGCS-EEEEEETTTEEEEEEBSSSCBCC--CEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred CCCcCC-EEEEEcCCCEEEEEEcCCCceEE--EEEeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCceee
Confidence 74 55 99999999999999997653211 2346679999999999997 55 999999999999999987632 24
Q ss_pred eEEecCCCCEEEEEEcCCC------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC--
Q 039302 318 MSFKAHNADVNVISWNRLA------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-- 383 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-- 383 (479)
..+.+|...|++++|+|+. ..+|++|+.|++|+|||++...........+.+|...|++++|+|++
T Consensus 139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~ 218 (297)
T 2pm7_B 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (297)
T ss_dssp EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence 5678999999999999973 26999999999999999987653122456788999999999999974
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-c
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-F 462 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i 462 (479)
+.+|++++.|++|+|||+...... ....++..+.....|.+++|+|++. +|++++.|+ |
T Consensus 219 ~~~las~s~D~~v~iWd~~~~~~~-------------------~~~~~~~~~~~~~~v~~~~~s~~g~-~las~~~D~~v 278 (297)
T 2pm7_B 219 RSYMASVSQDRTCIIWTQDNEQGP-------------------WKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKV 278 (297)
T ss_dssp SEEEEEEETTSCEEEEEESSTTSC-------------------CEEEESSSSCCSSCEEEEEECSSSC-CEEEEETTSCE
T ss_pred ceEEEEEECCCcEEEEEeCCCCCc-------------------cceeeeecccCCCcEEEEEECCCCC-EEEEEcCCCcE
Confidence 589999999999999999764210 0001111122234799999999996 667777777 9
Q ss_pred eEEeee
Q 039302 463 NILMPS 468 (479)
Q Consensus 463 ~iw~~~ 468 (479)
+||+..
T Consensus 279 ~lw~~~ 284 (297)
T 2pm7_B 279 TLWKEN 284 (297)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999875
No 10
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.5e-38 Score=312.43 Aligned_cols=248 Identities=23% Similarity=0.372 Sum_probs=219.4
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. .+...++.+|...|.+++|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~-~~l~s~s~Dg~i~vwd~~~---------------------~~~~~~l~~h~~~V~~v~~~ 159 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVF-SVMVSASEDATIKVWDYET---------------------GDFERTLKGHTDSVQDISFD 159 (410)
T ss_dssp CEEECCSSCEEEEEECSSS-SEEEEEESSSCEEEEETTT---------------------CCCCEEECCCSSCEEEEEEC
T ss_pred EeecccCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEeccCCcEEEEEEc
Confidence 4678999999999999998 7899999999999999987 67788999999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|++. +|++|+.||+|++||+.+... ...+.+|...|.+++|+|++. +|++|+.|++|++||++++. ++..+.+
T Consensus 160 ~~~~-~l~sgs~D~~i~iwd~~~~~~----~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~-~~~~~~~ 232 (410)
T 1vyh_C 160 HSGK-LLASCSADMTIKLWDFQGFEC----IRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGY-CVKTFTG 232 (410)
T ss_dssp TTSS-EEEEEETTSCCCEEETTSSCE----EECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC-EEEEEEC
T ss_pred CCCC-EEEEEeCCCeEEEEeCCCCce----eEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc-EEEEEeC
Confidence 9998 999999999999999977543 245788999999999999998 99999999999999999986 7788899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC-------------------
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE------------------- 383 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~------------------- 383 (479)
|...|.++.|+|++ .+|++|+.||.|++||+++.. ....+.+|...|.+++|+|..
T Consensus 233 h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 233 HREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKE----CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------
T ss_pred CCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc----eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCC
Confidence 99999999999999 899999999999999999887 788999999999999999953
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG- 461 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg- 461 (479)
+.+|++|+.|+.|++||++... .+....+| ..|++++|+|++. +|++++.|+
T Consensus 308 g~~l~sgs~D~~i~iwd~~~~~-------------------------~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~ 361 (410)
T 1vyh_C 308 GPFLLSGSRDKTIKMWDVSTGM-------------------------CLMTLVGHDNWVRGVLFHSGGK-FILSCADDKT 361 (410)
T ss_dssp CCEEEEEETTSEEEEEETTTTE-------------------------EEEEEECCSSCEEEEEECSSSS-CEEEEETTTE
T ss_pred CCEEEEEeCCCeEEEEECCCCc-------------------------eEEEEECCCCcEEEEEEcCCCC-EEEEEeCCCe
Confidence 4689999999999999998763 22222333 4699999999986 677788888
Q ss_pred ceEEeeecc
Q 039302 462 FNILMPSNI 470 (479)
Q Consensus 462 i~iw~~~~~ 470 (479)
|++|++.+.
T Consensus 362 i~vwd~~~~ 370 (410)
T 1vyh_C 362 LRVWDYKNK 370 (410)
T ss_dssp EEEECCTTS
T ss_pred EEEEECCCC
Confidence 999988543
No 11
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=3.7e-37 Score=300.23 Aligned_cols=216 Identities=21% Similarity=0.298 Sum_probs=186.8
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.......+|.+.|++|+|+|++ .+|++|+.||+|+|||+.. .+++.++.+|...|+++
T Consensus 118 ~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~---------------------~~~~~~~~~h~~~V~~~ 175 (344)
T 4gqb_B 118 VSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQ---------------------QVVLSSYRAHAAQVTCV 175 (344)
T ss_dssp EEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEE
T ss_pred EeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEcCcCCceEEE
Confidence 3445677999999999999999 7899999999999999987 67788999999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|++++..+|++|+.||+|++||++++..... .....|...+.+++|+|++..+|++|+.||+|+|||+++++ ++..
T Consensus 176 ~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~-~~~~ 252 (344)
T 4gqb_B 176 AASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS-CVLS 252 (344)
T ss_dssp EECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC---CCEE
T ss_pred EecCCCCCceeeeccccccccccccccceeee--eecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc-EEEE
Confidence 99999876899999999999999987654332 22345667899999999887799999999999999999885 7888
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
+.+|...|++++|+|++..+||+|+.|++|+|||+++.+ +..+.+|...|++|+|+|++..+|+++|.|++|++|
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~-----~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w 327 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE-----LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHH 327 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE-----EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc-----EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEE
Confidence 999999999999999987799999999999999998765 456789999999999999887889999999999999
Q ss_pred ECCCCC
Q 039302 400 DLSLEK 405 (479)
Q Consensus 400 dl~~~~ 405 (479)
++....
T Consensus 328 ~v~~~~ 333 (344)
T 4gqb_B 328 VVPTEP 333 (344)
T ss_dssp ECCC--
T ss_pred ECCCCC
Confidence 998763
No 12
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.4e-37 Score=298.53 Aligned_cols=256 Identities=18% Similarity=0.321 Sum_probs=219.4
Q ss_pred ceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 159 p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
-.+...+.+|.+.|++++|+|.++.+|+||+.||+|++|++...... ...++..+.+|...|.+
T Consensus 7 ~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~~ 70 (319)
T 3frx_A 7 LVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQK----------------FGVPVRSFKGHSHIVQD 70 (319)
T ss_dssp EEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTE----------------EEEEEEEEECCSSCEEE
T ss_pred EEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcc----------------ccccceEEeCCcccEEE
Confidence 34556788999999999999988789999999999999998652111 13456789999999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++|+|++. +|++|+.|++|++||+.++.. ...+.+|...|.+++|+|++. +|++|+.|++|++||++.. ++.
T Consensus 71 ~~~s~dg~-~l~s~s~D~~v~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~~--~~~ 142 (319)
T 3frx_A 71 CTLTADGA-YALSASWDKTLRLWDVATGET----YQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKGQ--CLA 142 (319)
T ss_dssp EEECTTSS-EEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTSC--EEE
T ss_pred EEECCCCC-EEEEEeCCCEEEEEECCCCCe----eEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCC--eEE
Confidence 99999998 999999999999999987644 245789999999999999998 9999999999999999753 677
Q ss_pred EEecCCCCEEEEEEcCCC-----CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 319 SFKAHNADVNVISWNRLA-----SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~-----~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
.+.+|...|.++.|.|.. ..+|++|+.|+.|++||++... ....+.+|..+|++++|+|++ .+|++|+.|
T Consensus 143 ~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~h~~~v~~~~~sp~g-~~l~s~~~d 217 (319)
T 3frx_A 143 TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ----IEADFIGHNSNINTLTASPDG-TLIASAGKD 217 (319)
T ss_dssp EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE----EEEEECCCCSCEEEEEECTTS-SEEEEEETT
T ss_pred EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch----hheeecCCCCcEEEEEEcCCC-CEEEEEeCC
Confidence 888999999999999854 2489999999999999999877 788899999999999999955 999999999
Q ss_pred CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 394 NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 394 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
++|+|||+... +.+....++..|.+++|+|++. ++++++.+++++|.+..
T Consensus 218 g~i~iwd~~~~-------------------------~~~~~~~~~~~v~~~~~sp~~~-~la~~~~~~i~v~~~~~ 267 (319)
T 3frx_A 218 GEIMLWNLAAK-------------------------KAMYTLSAQDEVFSLAFSPNRY-WLAAATATGIKVFSLDP 267 (319)
T ss_dssp CEEEEEETTTT-------------------------EEEEEEECCSCEEEEEECSSSS-EEEEEETTEEEEEEETT
T ss_pred CeEEEEECCCC-------------------------cEEEEecCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEeCc
Confidence 99999999876 3344444557899999999985 77777778899998643
No 13
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-36 Score=296.44 Aligned_cols=247 Identities=19% Similarity=0.279 Sum_probs=207.8
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+..|...|.+++|+|++ .+|++|+.||.|++|++..... .......+.+|...|.++.|+
T Consensus 91 ~~~~~~~~~v~~~~~s~~~-~~l~s~~~d~~v~iw~~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~ 152 (340)
T 1got_B 91 HAIPLRSSWVMTCAYAPSG-NYVACGGLDNICSIYNLKTREG-----------------NVRVSRELAGHTGYLSCCRFL 152 (340)
T ss_dssp EEEECSSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTCSB-----------------SCEEEEEEECCSSCEEEEEEE
T ss_pred eEeecCCccEEEEEECCCC-CEEEEEeCCCeEEEEECccCCC-----------------cceeEEEecCCCccEEEEEEC
Confidence 4567899999999999998 7899999999999999976211 123456788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
+++ .|++|+.|+.|++||+.++.. ...+.+|...|.+++|+|++. +|++|+.||+|++||++++. +...+.+
T Consensus 153 ~~~--~l~s~s~d~~i~~wd~~~~~~----~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~-~~~~~~~ 224 (340)
T 1got_B 153 DDN--QIVTSSGDTTCALWDIETGQQ----TTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM-CRQTFTG 224 (340)
T ss_dssp ETT--EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS-EEEEECC
T ss_pred CCC--cEEEEECCCcEEEEECCCCcE----EEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCe-eEEEEcC
Confidence 875 699999999999999987543 245778999999999999998 99999999999999999885 7788899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
|...|++++|+|++ .+|++|+.||+|++||++... .+..+.. +...|++++|+|++ .+|++|+.|+.|++||
T Consensus 225 h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~v~~~~~s~~g-~~l~~g~~d~~i~vwd 298 (340)
T 1got_B 225 HESDINAICFFPNG-NAFATGSDDATCRLFDLRADQ----ELMTYSHDNIICGITSVSFSKSG-RLLLAGYDDFNCNVWD 298 (340)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE----EEEEECCTTCCSCEEEEEECTTS-SEEEEEETTSEEEEEE
T ss_pred CcCCEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCc----EEEEEccCCcccceEEEEECCCC-CEEEEECCCCeEEEEE
Confidence 99999999999999 899999999999999999876 5666543 33579999999965 9999999999999999
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
+..... ...+..| ...|.+++|+|++. +|++++.|+ |+||+
T Consensus 299 ~~~~~~----------------------~~~~~~h--~~~v~~~~~s~dg~-~l~s~s~D~~i~iWd 340 (340)
T 1got_B 299 ALKADR----------------------AGVLAGH--DNRVSCLGVTDDGM-AVATGSWDSFLKIWN 340 (340)
T ss_dssp TTTCCE----------------------EEEEECC--SSCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred cccCcE----------------------eeEeecC--CCcEEEEEEcCCCC-EEEEEcCCccEEecC
Confidence 987631 0122222 35799999999985 778888887 99995
No 14
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=8.9e-37 Score=297.20 Aligned_cols=253 Identities=15% Similarity=0.236 Sum_probs=217.6
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. ...+..+..|...|.+++
T Consensus 47 ~~~~l~gH~~~v~~~~~s~d~-~~l~s~s~Dg~v~iWd~~~---------------------~~~~~~~~~~~~~v~~~~ 104 (340)
T 1got_B 47 TRRTLRGHLAKIYAMHWGTDS-RLLLSASQDGKLIIWDSYT---------------------TNKVHAIPLRSSWVMTCA 104 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTT---------------------CCEEEEEECSSSCEEEEE
T ss_pred hheeecCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCC---------------------CCcceEeecCCccEEEEE
Confidence 345788999999999999998 7899999999999999887 567788889999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|++. +|++|+.|+.|++|++.+..........+.+|.+.|.++.|++++ .+++++.|++|++||++++. ++..+
T Consensus 105 ~s~~~~-~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~-~~~~~ 180 (340)
T 1got_B 105 YAPSGN-YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQ-QTTTF 180 (340)
T ss_dssp ECTTSS-EEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTE-EEEEE
T ss_pred ECCCCC-EEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCc-EEEEE
Confidence 999998 999999999999999977543222224567899999999999876 48999999999999999875 77788
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
.+|...|++++|+|++ .+|++|+.||.|++||+++.. ++..+.+|...|++++|+|++ .+|++|+.|++|++||
T Consensus 181 ~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~d~~v~iwd 254 (340)
T 1got_B 181 TGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGM----CRQTFTGHESDINAICFFPNG-NAFATGSDDATCRLFD 254 (340)
T ss_dssp CCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCS----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEE
T ss_pred cCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCe----eEEEEcCCcCCEEEEEEcCCC-CEEEEEcCCCcEEEEE
Confidence 9999999999999998 899999999999999999887 789999999999999999965 9999999999999999
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
++.... ...+.|..+ ..|++++|+|++. +|++++.|+ |++|++.+
T Consensus 255 ~~~~~~-----------------------~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~d~~i~vwd~~~ 301 (340)
T 1got_B 255 LRADQE-----------------------LMTYSHDNIICGITSVSFSKSGR-LLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp TTTTEE-----------------------EEEECCTTCCSCEEEEEECTTSS-EEEEEETTSEEEEEETTT
T ss_pred CCCCcE-----------------------EEEEccCCcccceEEEEECCCCC-EEEEECCCCeEEEEEccc
Confidence 987631 112333322 3699999999996 777777777 99998754
No 15
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.4e-37 Score=301.71 Aligned_cols=301 Identities=19% Similarity=0.241 Sum_probs=236.3
Q ss_pred cCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 039302 70 GWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSD 149 (479)
Q Consensus 70 ~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (479)
.-+..++.|-|+. .+|++|+ .++.|.||++.
T Consensus 66 ~~~V~~~~~sp~~-----------~~l~s~s-----~D~~v~iWd~~--------------------------------- 96 (380)
T 3iz6_a 66 SGKVYSLDWTPEK-----------NWIVSAS-----QDGRLIVWNAL--------------------------------- 96 (380)
T ss_dssp SSCEEEEEECTTS-----------SCEEEEE-----TTSEEEEEETT---------------------------------
T ss_pred ccEEEEEEEcCCC-----------CEEEEEe-----CCCeEEEEECC---------------------------------
Confidence 3456677787763 2477763 67899999772
Q ss_pred cccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe
Q 039302 150 DEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF 229 (479)
Q Consensus 150 ~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (479)
.......+..|...|.+++|+|++ .+||+|+.|+.|+||++....... ........+
T Consensus 97 --------~~~~~~~~~~h~~~v~~~~~s~~g-~~las~~~d~~v~iw~~~~~~~~~--------------~~~~~~~~~ 153 (380)
T 3iz6_a 97 --------TSQKTHAIKLHCPWVMECAFAPNG-QSVACGGLDSACSIFNLSSQADRD--------------GNMPVSRVL 153 (380)
T ss_dssp --------TTEEEEEEECCCTTCCCCEECTTS-SEEEECCSSSCCEEEECCCCSSCC--------------CSSTTCCBC
T ss_pred --------CCccceEEecCCCCEEEEEECCCC-CEEEEeeCCCcEEEEECCCCcccc--------------CCccceeec
Confidence 223345677899999999999999 789999999999999997631110 012344567
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccC-CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 230 GGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVD-PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 230 ~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~-~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
.+|...+.++.|+|.+..+|++|+.|++|++||+.++...... .....+|...|.+++|++.+.++|++|+.||+|++|
T Consensus 154 ~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~w 233 (380)
T 3iz6_a 154 TGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLW 233 (380)
T ss_dssp CCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEE
T ss_pred cCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEE
Confidence 8999999999999987668999999999999999886543221 122367999999999988555599999999999999
Q ss_pred EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC-------CCeEEEEEeC
Q 039302 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK-------HPVTSIEWSP 381 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~-------~~I~~v~~sp 381 (479)
|++....++..+.+|...|++++|+|++ .+|++|+.||+|++||++++. .+..+..+. ..|++++|+|
T Consensus 234 d~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~lwd~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~s~ 308 (380)
T 3iz6_a 234 DLRITSRAVRTYHGHEGDINSVKFFPDG-QRFGTGSDDGTCRLFDMRTGH----QLQVYNREPDRNDNELPIVTSVAFSI 308 (380)
T ss_dssp ETTTTCCCCEEECCCSSCCCEEEECTTS-SEEEEECSSSCEEEEETTTTE----EEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred ECCCCCcceEEECCcCCCeEEEEEecCC-CeEEEEcCCCeEEEEECCCCc----EEEEecccccccccccCceEEEEECC
Confidence 9996655778889999999999999999 899999999999999999887 677665543 3489999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCC
Q 039302 382 HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~d 460 (479)
++ .+|++|+.||.|++||+...... ..+.....+| ..|++++|+|++. +|++++.|
T Consensus 309 ~g-~~l~~g~~dg~i~vwd~~~~~~~---------------------~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~D 365 (380)
T 3iz6_a 309 SG-RLLFAGYSNGDCYVWDTLLAEMV---------------------LNLGTLQNSHEGRISCLGLSSDGS-ALCTGSWD 365 (380)
T ss_dssp SS-SEEEEECTTSCEEEEETTTCCEE---------------------EEECCSCSSCCCCCCEEEECSSSS-EEEEECTT
T ss_pred CC-CEEEEEECCCCEEEEECCCCceE---------------------EEEecccCCCCCceEEEEECCCCC-EEEEeeCC
Confidence 65 99999999999999999766310 0000011233 4699999999996 88889988
Q ss_pred C-ceEEeeecc
Q 039302 461 G-FNILMPSNI 470 (479)
Q Consensus 461 g-i~iw~~~~~ 470 (479)
+ |+||++..-
T Consensus 366 ~~i~iW~~~~~ 376 (380)
T 3iz6_a 366 KNLKIWAFSGH 376 (380)
T ss_dssp SCEEEEECCSS
T ss_pred CCEEEEecCCC
Confidence 8 999998653
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.9e-36 Score=292.64 Aligned_cols=287 Identities=20% Similarity=0.259 Sum_probs=230.9
Q ss_pred cCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 039302 70 GWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSD 149 (479)
Q Consensus 70 ~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (479)
.-+..++.|-|+. .+|++|. .++.|.||+..
T Consensus 64 ~~~V~~~~~s~d~-----------~~l~s~s-----~Dg~v~vWd~~--------------------------------- 94 (354)
T 2pbi_B 64 GNKVLCMDWCKDK-----------RRIVSSS-----QDGKVIVWDSF--------------------------------- 94 (354)
T ss_dssp SSCEEEEEECTTS-----------SEEEEEE-----TTSEEEEEETT---------------------------------
T ss_pred CCeEEEEEECCCC-----------CEEEEEe-----CCCeEEEEECC---------------------------------
Confidence 3456677887763 2577763 78899999762
Q ss_pred cccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe
Q 039302 150 DEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF 229 (479)
Q Consensus 150 ~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (479)
..........|...|.+++|+|++ .++|+|+.|+.+++|++....... .......+
T Consensus 95 --------~~~~~~~~~~~~~~v~~~~~sp~g-~~lasg~~d~~i~v~~~~~~~~~~---------------~~~~~~~~ 150 (354)
T 2pbi_B 95 --------TTNKEHAVTMPCTWVMACAYAPSG-CAIACGGLDNKCSVYPLTFDKNEN---------------MAAKKKSV 150 (354)
T ss_dssp --------TCCEEEEEECSSSCCCEEEECTTS-SEEEEESTTSEEEEEECCCCTTCC---------------SGGGCEEE
T ss_pred --------CCCcceEEecCCCCEEEEEECCCC-CEEEEeeCCCCEEEEEEecccccc---------------ccccceee
Confidence 112234566789999999999999 789999999999999987521110 12345667
Q ss_pred cCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEE
Q 039302 230 GGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIW 308 (479)
Q Consensus 230 ~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iw 308 (479)
.+|...|.+++|+|++. .|++|+.||+|++||+.++.. ...+.+|...|.+++|+|.. .++|++|+.||+|++|
T Consensus 151 ~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~w 225 (354)
T 2pbi_B 151 AMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQL----LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225 (354)
T ss_dssp EECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEE
T ss_pred eccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeE----EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEE
Confidence 78999999999999997 999999999999999987654 24578899999999998853 2499999999999999
Q ss_pred EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC--CCCeEEEEEeCCCCCE
Q 039302 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH--KHPVTSIEWSPHEGST 386 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h--~~~I~~v~~sp~~~~~ 386 (479)
|+++++ ++..+..|...|++++|+|++ .+|++|+.|++|++||++... .+..+..+ ...+++++|+|++ .+
T Consensus 226 d~~~~~-~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~----~~~~~~~~~~~~~~~~~~~s~~g-~~ 298 (354)
T 2pbi_B 226 DMRSGQ-CVQAFETHESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADR----EVAIYSKESIIFGASSVDFSLSG-RL 298 (354)
T ss_dssp ETTTCC-EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE----EEEEECCTTCCSCEEEEEECTTS-SE
T ss_pred ECCCCc-EEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc----EEEEEcCCCcccceeEEEEeCCC-CE
Confidence 999986 778889999999999999999 899999999999999999876 55555543 4578999999965 99
Q ss_pred EEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEE
Q 039302 387 LAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNIL 465 (479)
Q Consensus 387 las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw 465 (479)
|++|+.|+.|++||+.... .+.....+...|++++|+|++. +|++++.|+ |+||
T Consensus 299 l~~g~~d~~i~vwd~~~~~------------------------~~~~l~~h~~~v~~l~~spdg~-~l~sgs~D~~v~vW 353 (354)
T 2pbi_B 299 LFAGYNDYTINVWDVLKGS------------------------RVSILFGHENRVSTLRVSPDGT-AFCSGSWDHTLRVW 353 (354)
T ss_dssp EEEEETTSCEEEEETTTCS------------------------EEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEE
T ss_pred EEEEECCCcEEEEECCCCc------------------------eEEEEECCCCcEEEEEECCCCC-EEEEEcCCCCEEec
Confidence 9999999999999997763 1122222235799999999996 788888888 9998
Q ss_pred e
Q 039302 466 M 466 (479)
Q Consensus 466 ~ 466 (479)
.
T Consensus 354 ~ 354 (354)
T 2pbi_B 354 A 354 (354)
T ss_dssp C
T ss_pred C
Confidence 4
No 17
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-36 Score=294.63 Aligned_cols=261 Identities=18% Similarity=0.291 Sum_probs=196.8
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
+|.+.|++++|+|++ .+||+|+.||+|+||++....... ....++..+.+|...|++++|+|++.
T Consensus 56 ~h~~~v~~v~~sp~~-~~las~s~D~~v~iw~~~~~~~~~--------------~~~~~~~~~~~h~~~V~~v~~sp~g~ 120 (330)
T 2hes_X 56 AHKKAIRSVAWRPHT-SLLAAGSFDSTVSIWAKEESADRT--------------FEMDLLAIIEGHENEVKGVAWSNDGY 120 (330)
T ss_dssp CCCSCEEEEEECTTS-SEEEEEETTSCEEEEEC---------------------CCCEEEEEEC----CEEEEEECTTSC
T ss_pred CccCCEEEEEECCCC-CEEEEEeCCCcEEEEEcccCcCcc--------------ccceeEEEEcCCCCcEEEEEECCCCC
Confidence 399999999999998 789999999999999986421000 01345677899999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-ceeeEEecCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK-SALMSFKAHNA 325 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~-~~~~~~~~h~~ 325 (479)
+|++|+.|++|++||+............+.+|...|.+++|+|++. +|++|+.|++|+|||++... .++..+.+|..
T Consensus 121 -~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~ 198 (330)
T 2hes_X 121 -YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNGHEG 198 (330)
T ss_dssp -EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred -EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccCCCC
Confidence 9999999999999999543221111244678999999999999998 99999999999999998753 36777889999
Q ss_pred CEEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCC----ceEEEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 326 DVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGD----SVVAHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 326 ~v~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~----~~~~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
.|.+++|+|++ ..+|++|+.|++|++||++...... .....+.. |...|++++|++ + .+|++++.||.|+||
T Consensus 199 ~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~-~-~~l~s~~~dg~v~iw 276 (330)
T 2hes_X 199 TVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGF-N-GLIASVGADGVLAVY 276 (330)
T ss_dssp CEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECT-T-SCEEEEETTSCEEEE
T ss_pred cEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcC-C-CEEEEEeCCCEEEEE
Confidence 99999999983 2689999999999999997652111 13445554 999999999997 4 589999999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-C-CeeeEEEeCC-CCcEEEEEcCCC-ceEEeee
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-K-DLKELHWHTQ-VPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~-~V~~v~w~p~-~~~ll~s~~~dg-i~iw~~~ 468 (479)
++..... ..+.....+| . .|.+++|+|. +..+|++++.|| |+||++.
T Consensus 277 ~~~~~~~----------------------~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 277 EEVDGEW----------------------KVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp EEETTEE----------------------EEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred EcCCCce----------------------EEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 9865410 0111111223 3 6999999994 335889999998 9999875
No 18
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6.7e-37 Score=295.69 Aligned_cols=254 Identities=20% Similarity=0.285 Sum_probs=214.7
Q ss_pred CceeEEEEecCCcceeEEEEecCC---CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQN---PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD 234 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~---~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 234 (479)
..++.....+|.+.|++++|+|++ ..+|+||+.||+|+||++... .......+.+|..
T Consensus 21 ~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~-------------------~~~~~~~l~gh~~ 81 (321)
T 3ow8_A 21 YGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE-------------------RLDLQWSLEGHQL 81 (321)
T ss_dssp CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETT-------------------EEEEEEEECCCSS
T ss_pred hhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC-------------------CeeeeeeeccCCC
Confidence 345545667999999999999863 368999999999999998752 1233457889999
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.|.+++|++++. ++++|+.|++|++||+.++... ..+..|...+.+++|+|++. +|++|+.||.|++||+++++
T Consensus 82 ~v~~~~~~~~~~-~l~s~s~D~~i~lWd~~~~~~~----~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~ 155 (321)
T 3ow8_A 82 GVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQI----KSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGK 155 (321)
T ss_dssp CEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEE----EEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCS
T ss_pred CEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCEE----EEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCc
Confidence 999999999998 9999999999999999875442 34567788899999999998 99999999999999999886
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
....+..|...|.+++|+|++ .+|++|+.||.|++||+++++ ++..+.+|..+|++++|+|++ .+|++|+.|+
T Consensus 156 -~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~spd~-~~l~s~s~dg 228 (321)
T 3ow8_A 156 -KEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGK----LLHTLEGHAMPIRSLTFSPDS-QLLVTASDDG 228 (321)
T ss_dssp -EEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE----EEEEECCCSSCCCEEEECTTS-CEEEEECTTS
T ss_pred -eeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc----EEEEEcccCCceeEEEEcCCC-CEEEEEcCCC
Confidence 667788899999999999999 899999999999999999887 789999999999999999965 8999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.|+|||++... +.....+| ..|.+++|+|++. +|++++.|+ |++|++.+
T Consensus 229 ~i~iwd~~~~~-------------------------~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 229 YIKIYDVQHAN-------------------------LAGTLSGHASWVLNVAFCPDDT-HFVSSSSDKSVKVWDVGT 279 (321)
T ss_dssp CEEEEETTTCC-------------------------EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred eEEEEECCCcc-------------------------eeEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCC
Confidence 99999998763 22333334 4699999999986 777788777 99999754
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.7e-35 Score=284.19 Aligned_cols=246 Identities=21% Similarity=0.365 Sum_probs=207.7
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|...|++++|+|++ .+|++|+.||.|++||+.. .+.+..+.+|...|.+++|
T Consensus 58 ~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~i~vwd~~~---------------------~~~~~~~~~~~~~v~~~~~ 115 (312)
T 4ery_A 58 EKTISGHKLGISDVAWSSDS-NLLVSASDDKTLKIWDVSS---------------------GKCLKTLKGHSNYVFCCNF 115 (312)
T ss_dssp EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEEE
T ss_pred chhhccCCCceEEEEEcCCC-CEEEEECCCCEEEEEECCC---------------------CcEEEEEcCCCCCEEEEEE
Confidence 34677999999999999998 7889999999999999987 5778889999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE-
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF- 320 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~- 320 (479)
+|++. +|++|+.||.|++||+.++... ..+..|..+|.+++|+|++. +|++++.||.|++||+++++ .+..+
T Consensus 116 ~~~~~-~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~wd~~~~~-~~~~~~ 188 (312)
T 4ery_A 116 NPQSN-LIVSGSFDESVRIWDVKTGKCL----KTLPAHSDPVSAVHFNRDGS-LIVSSSYDGLCRIWDTASGQ-CLKTLI 188 (312)
T ss_dssp CSSSS-EEEEEETTSCEEEEETTTCCEE----EEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC-EEEEEC
T ss_pred cCCCC-EEEEEeCCCcEEEEECCCCEEE----EEecCCCCcEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCc-eeeEEe
Confidence 99998 9999999999999999875442 34678999999999999998 99999999999999999886 44443
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE--EEEEeCCCCCEEEEEeCCCcEEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT--SIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~--~v~~sp~~~~~las~s~Dg~I~i 398 (479)
..+...+.+++|+|++ .+|++++.||.|++||+++.+ .+..+.+|...+. ...|++.++.+|++|+.||.|++
T Consensus 189 ~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~v 263 (312)
T 4ery_A 189 DDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGK----CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYI 263 (312)
T ss_dssp CSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE----EEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEE
T ss_pred ccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCc----EEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEE
Confidence 5567789999999999 899999999999999999887 7888888876543 34566556789999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEc--CCC-ceEEee
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTA--ADG-FNILMP 467 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~--~dg-i~iw~~ 467 (479)
||+.... ++....+| ..|.+++|+|+++ ++++++ .|+ |++|+.
T Consensus 264 wd~~~~~-------------------------~~~~~~~h~~~v~~~~~~p~~~-~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 264 WNLQTKE-------------------------IVQKLQGHTDVVISTACHPTEN-IIASAALENDKTIKLWKS 310 (312)
T ss_dssp EETTTCC-------------------------EEEEECCCSSCEEEEEECSSSS-EEEEEECTTTCCEEEEEC
T ss_pred EECCCch-------------------------hhhhhhccCCcEEEEeecCcCC-ceEEEEccCCccEEEecC
Confidence 9998763 33333333 4699999999996 666664 466 999985
No 20
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2e-36 Score=299.35 Aligned_cols=260 Identities=18% Similarity=0.260 Sum_probs=215.5
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.......+.+|.+.|++++|+|++ .+|+||+.||+|+|||+.. .+.+..+.+|...|.
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~~-~~l~s~s~D~~v~iWd~~~---------------------~~~~~~~~~h~~~v~ 112 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPEK-NWIVSASQDGRLIVWNALT---------------------SQKTHAIKLHCPWVM 112 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTS-SCEEEEETTSEEEEEETTT---------------------TEEEEEEECCCTTCC
T ss_pred eeEEeecccccccEEEEEEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CccceEEecCCCCEE
Confidence 344556789999999999999998 7889999999999999987 566788899999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCc---cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDAT---WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~---~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
+++|+|++. +|++|+.|+.|++|++.+... .......+.+|.+.|.++.|+|++...|++|+.|++|++||+++++
T Consensus 113 ~~~~s~~g~-~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 113 ECAFAPNGQ-SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp CCEECTTSS-EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred EEEECCCCC-EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence 999999998 999999999999999975321 1112345789999999999999877689999999999999999986
Q ss_pred ceeeEE-----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 315 SALMSF-----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 315 ~~~~~~-----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.+..+ .+|...|.+++|++.++.+|++|+.||.|++||++.... ++..+.+|...|++++|+|++ .+|++
T Consensus 192 -~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~---~~~~~~~h~~~v~~v~~~p~~-~~l~s 266 (380)
T 3iz6_a 192 -RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR---AVRTYHGHEGDINSVKFFPDG-QRFGT 266 (380)
T ss_dssp -EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC---CCEEECCCSSCCCEEEECTTS-SEEEE
T ss_pred -EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc---ceEEECCcCCCeEEEEEecCC-CeEEE
Confidence 45444 578999999999985559999999999999999996543 788999999999999999965 99999
Q ss_pred EeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-----CCCeeeEEEeCCCCcEEEEEcCCC-ce
Q 039302 390 SSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-----QKDLKELHWHTQVPGMIVSTAADG-FN 463 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-----~~~V~~v~w~p~~~~ll~s~~~dg-i~ 463 (479)
|+.|++|++||++..... ..+..+.. ...|++++|+|++. +|++++.+| |+
T Consensus 267 ~s~D~~i~lwd~~~~~~~----------------------~~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~g~~dg~i~ 323 (380)
T 3iz6_a 267 GSDDGTCRLFDMRTGHQL----------------------QVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNGDCY 323 (380)
T ss_dssp ECSSSCEEEEETTTTEEE----------------------EEECCCCSSSCCSSCSCSEEEECSSSS-EEEEECTTSCEE
T ss_pred EcCCCeEEEEECCCCcEE----------------------EEecccccccccccCceEEEEECCCCC-EEEEEECCCCEE
Confidence 999999999999876311 11111110 12489999999996 677777777 99
Q ss_pred EEeee
Q 039302 464 ILMPS 468 (479)
Q Consensus 464 iw~~~ 468 (479)
+|++.
T Consensus 324 vwd~~ 328 (380)
T 3iz6_a 324 VWDTL 328 (380)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99864
No 21
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.3e-35 Score=282.06 Aligned_cols=253 Identities=19% Similarity=0.311 Sum_probs=206.6
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|...|++++|+|++ .+|++|+.||+|+|||+.. .+.+..+.+|...|.+++|
T Consensus 58 ~~~~~~h~~~v~~~~~s~dg-~~l~s~s~D~~v~~wd~~~---------------------~~~~~~~~~h~~~v~~~~~ 115 (319)
T 3frx_A 58 VRSFKGHSHIVQDCTLTADG-AYALSASWDKTLRLWDVAT---------------------GETYQRFVGHKSDVMSVDI 115 (319)
T ss_dssp EEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEEEE
T ss_pred ceEEeCCcccEEEEEECCCC-CEEEEEeCCCEEEEEECCC---------------------CCeeEEEccCCCcEEEEEE
Confidence 34678999999999999999 7889999999999999987 5677889999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-----cEEEEEeCCCcEEEEEcCCCCce
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-----DVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-----~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
+|++. +|++|+.|++|++||+... . ...+.+|...|.++.|+|... ..|++++.|++|++||+++.+ .
T Consensus 116 ~~~~~-~l~s~s~D~~i~vwd~~~~-~----~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~ 188 (319)
T 3frx_A 116 DKKAS-MIISGSRDKTIKVWTIKGQ-C----LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ-I 188 (319)
T ss_dssp CTTSC-EEEEEETTSCEEEEETTSC-E----EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-E
T ss_pred cCCCC-EEEEEeCCCeEEEEECCCC-e----EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-h
Confidence 99998 9999999999999999642 2 245678999999999999642 389999999999999999875 6
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
...+.+|...|++++|+|++ .+|++|+.||.|+|||+++.+ ++..+.. ...|.+++|+|++ .+|++++. +.+
T Consensus 189 ~~~~~~h~~~v~~~~~sp~g-~~l~s~~~dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~sp~~-~~la~~~~-~~i 260 (319)
T 3frx_A 189 EADFIGHNSNINTLTASPDG-TLIASAGKDGEIMLWNLAAKK----AMYTLSA-QDEVFSLAFSPNR-YWLAAATA-TGI 260 (319)
T ss_dssp EEEECCCCSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE----EEEEEEC-CSCEEEEEECSSS-SEEEEEET-TEE
T ss_pred heeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCc----EEEEecC-CCcEEEEEEcCCC-CEEEEEcC-CCc
Confidence 67788999999999999999 899999999999999999887 7777775 4689999999965 88888775 459
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCc-eEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQ-LLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
++|++....... ...+. ..+...+...|.+++|+|++. +|++++.|+ |+||++.+
T Consensus 261 ~v~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 261 KVFSLDPQYLVD-----------------DLRPEFAGYSKAAEPHAVSLAWSADGQ-TLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp EEEEETTEEEEE-----------------EECCCCTTCCGGGCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEE
T ss_pred EEEEeCcCeeee-----------------ccCccccccccCcCcceeEEEECCCCC-EEEEeecCceEEEEEEee
Confidence 999997642100 00000 000011123689999999996 777787777 99999864
No 22
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.3e-35 Score=290.57 Aligned_cols=255 Identities=18% Similarity=0.239 Sum_probs=215.6
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ .+||||+.||+|+|||... .+....+..|...|.+++
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~-~~l~s~s~Dg~v~vWd~~~---------------------~~~~~~~~~~~~~v~~~~ 113 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDK-RRIVSSSQDGKVIVWDSFT---------------------TNKEHAVTMPCTWVMACA 113 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEECSSSCCCEEE
T ss_pred EEEEecCCCCeEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CCcceEEecCCCCEEEEE
Confidence 345788999999999999998 7899999999999999876 556677888999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCc--cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDAT--WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
|+|++. .|++|+.|+.|++|++..... .......+.+|...|.+++|+|++. .|++++.||+|++||+++++ ++.
T Consensus 114 ~sp~g~-~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~-~~~ 190 (354)
T 2pbi_B 114 YAPSGC-AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQ-LLQ 190 (354)
T ss_dssp ECTTSS-EEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC-EEE
T ss_pred ECCCCC-EEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCe-EEE
Confidence 999998 999999999999999865321 1112344668999999999999998 89999999999999999986 778
Q ss_pred EEecCCCCEEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 319 SFKAHNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.+.+|...|.+++|+|.. +.+|++|+.||.|++||++++. ++..+.+|...|++++|+|++ .+|++|+.|++|+
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~----~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~v~ 265 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ----CVQAFETHESDVNSVRYYPSG-DAFASGSDDATCR 265 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEE
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCeEEEEEeCCC-CEEEEEeCCCeEE
Confidence 889999999999998853 3799999999999999999987 889999999999999999965 9999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+||++.... ...+.+.. ...+.+++|+|++. +|++++.|+ |++|++.+
T Consensus 266 lwd~~~~~~-----------------------~~~~~~~~~~~~~~~~~~s~~g~-~l~~g~~d~~i~vwd~~~ 315 (354)
T 2pbi_B 266 LYDLRADRE-----------------------VAIYSKESIIFGASSVDFSLSGR-LLFAGYNDYTINVWDVLK 315 (354)
T ss_dssp EEETTTTEE-----------------------EEEECCTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEETTT
T ss_pred EEECCCCcE-----------------------EEEEcCCCcccceeEEEEeCCCC-EEEEEECCCcEEEEECCC
Confidence 999987631 11222221 23689999999996 677777776 99998754
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.2e-35 Score=283.27 Aligned_cols=262 Identities=21% Similarity=0.354 Sum_probs=203.6
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ .++++|+.||+|+|||+.. .+.+..+.+|...|++++
T Consensus 68 ~~~~l~~h~~~V~~~~~~~~~-~~l~s~s~D~~v~lwd~~~---------------------~~~~~~~~~h~~~v~~v~ 125 (343)
T 2xzm_R 68 PHKALTGHNHFVSDLALSQEN-CFAISSSWDKTLRLWDLRT---------------------GTTYKRFVGHQSEVYSVA 125 (343)
T ss_dssp EEEEECCCSSCEEEEEECSST-TEEEEEETTSEEEEEETTS---------------------SCEEEEEECCCSCEEEEE
T ss_pred ccchhccCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCC---------------------CcEEEEEcCCCCcEEEEE
Confidence 345678999999999999998 7889999999999999987 567788999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC---------cEEEEEeCCCcEEEEEcC
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES---------DVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~---------~~l~s~s~dg~I~iwD~~ 311 (479)
|+|++. +|++|+.|+.|++||+..... .......+|...|.+++|+|.+. .+|++++.||+|++||.+
T Consensus 126 ~sp~~~-~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~ 202 (343)
T 2xzm_R 126 FSPDNR-QILSAGAEREIKLWNILGECK--FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN 202 (343)
T ss_dssp ECSSTT-EEEEEETTSCEEEEESSSCEE--EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT
T ss_pred ECCCCC-EEEEEcCCCEEEEEeccCCce--eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC
Confidence 999998 999999999999999974221 11233457899999999999872 389999999999999954
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
. .....+.+|...|++++|+|++ .+|++|+.||.|++||++.... +...+. +...|++++|+|++ .+|+ ++
T Consensus 203 ~--~~~~~~~~h~~~v~~~~~s~~g-~~l~sgs~dg~v~iwd~~~~~~---~~~~~~-~~~~v~~v~~sp~~-~~la-~~ 273 (343)
T 2xzm_R 203 F--QIRYTFKAHESNVNHLSISPNG-KYIATGGKDKKLLIWDILNLTY---PQREFD-AGSTINQIAFNPKL-QWVA-VG 273 (343)
T ss_dssp T--EEEEEEECCSSCEEEEEECTTS-SEEEEEETTCEEEEEESSCCSS---CSEEEE-CSSCEEEEEECSSS-CEEE-EE
T ss_pred C--ceeEEEcCccccceEEEECCCC-CEEEEEcCCCeEEEEECCCCcc---cceeec-CCCcEEEEEECCCC-CEEE-EE
Confidence 3 3566788999999999999999 8999999999999999965543 444443 56679999999964 6665 45
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.|+.|++|++....... .......+........++ ..|.+++|+|++. +|++++.|| |++|++.+
T Consensus 274 ~d~~v~iw~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 274 TDQGVKIFNLMTQSKAP------------VCTIEAEPITKAEGQKGKNPQCTSLAWNALGK-KLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp ESSCEEEEESSSCCSCS------------EEECCCCSGGGBTTBCCSCCCEEEEEECSSSC-CEEEEETTSEEEEEEEEE
T ss_pred CCCCEEEEEeCCCCCCc------------eEEeecCcchhhhhhcCCCCceEEEEECCCCC-eEEEecCCceEEEEEEEc
Confidence 68889999997653210 000000000000111133 3699999999996 667777777 99999864
No 24
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=2.6e-36 Score=296.00 Aligned_cols=254 Identities=16% Similarity=0.205 Sum_probs=202.0
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeC------CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWAD------TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
..|.+.|++|+|+|+| .+||+|+. ||.|++|+...... .........+|...|+++
T Consensus 39 ~~H~~~V~~v~fSpDG-~~las~s~d~~~~wd~~v~~~~~~~~~~-----------------~~~~~~~~~~~~~~V~~~ 100 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDG-ALLLAASSLSSRTWGGSIWVFKDPEGAP-----------------NESLCTAGVQTEAGVTDV 100 (357)
T ss_dssp -CCCSEEEEEEECSSS-CEEEEEECSSSSSCCEEEEEESSCC--------------------CGGGCSEEEECSSCEEEE
T ss_pred ccccCCEEEEEECCCC-CEEEEEcCCCCccccCeEEEEECCCCCc-----------------ceeEecccCCCCCCEEEE
Confidence 4699999999999999 78889987 78899998866211 112233455788899999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|+|++ .+++++.||+|+|||+.++...........+|...|++++|+|++. +|++|+.||+|+|||+++++ ++..
T Consensus 101 ~~s~d~--~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~-~~~~ 176 (357)
T 4g56_B 101 AWVSEK--GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKA-VLKS 176 (357)
T ss_dssp EEETTT--EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTE-EEEE
T ss_pred EEcCCC--CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCc-EEEE
Confidence 999986 5778888999999999876543322233458999999999999998 99999999999999999875 7788
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE--EeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA--HFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~--~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
+.+|...|++++|++++..+|++++.||.|++||+++.+ ++. .+..|...+++++|+|+++.+|++|+.|+.|+
T Consensus 177 ~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~----~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~ 252 (357)
T 4g56_B 177 YNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPK----PATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVS 252 (357)
T ss_dssp ECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSS----CBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEE
T ss_pred EcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCc----eeeeeeeccccccccchhhhhcccceEEEeeccccee
Confidence 899999999999999987799999999999999999887 333 34457788999999998888999999999999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+||++... .+.....+...|++++|+|++..+|++++.|+ |+||++..
T Consensus 253 ~wd~~~~~------------------------~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 253 LVNIKNPD------------------------SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp EEESSCGG------------------------GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred EEECCCCc------------------------EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 99998763 11222222357999999999877899999988 99998754
No 25
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=7e-35 Score=289.62 Aligned_cols=248 Identities=18% Similarity=0.320 Sum_probs=202.6
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+...|++++|+|++ .+||+|+.||.|+|||+.. .+.+..+.+|...|++++|+|++.
T Consensus 121 ~~~~~v~~v~~s~dg-~~l~s~~~d~~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~~~~p~~~ 178 (393)
T 1erj_A 121 SSDLYIRSVCFSPDG-KFLATGAEDRLIRIWDIEN---------------------RKIVMILQGHEQDIYSLDYFPSGD 178 (393)
T ss_dssp CCCCBEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEECTTSS
T ss_pred CCceeEEEEEECCCC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEccCCCCEEEEEEcCCCC
Confidence 455679999999999 7889999999999999987 566788999999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCceeeEE-----
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP-TESDVFASCSVDGNIAIWDTRVGKSALMSF----- 320 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~----- 320 (479)
+|++|+.|++|++||+.++.... ...+...+.+++|+| ++. +|++|+.||.|++||++++. .+..+
T Consensus 179 -~l~s~s~d~~v~iwd~~~~~~~~-----~~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~~ 250 (393)
T 1erj_A 179 -KLVSGSGDRTVRIWDLRTGQCSL-----TLSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGF-LVERLDSENE 250 (393)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEE-----EEECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCC-EEEEEC----
T ss_pred -EEEEecCCCcEEEEECCCCeeEE-----EEEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCc-EEEeeccccc
Confidence 99999999999999998754321 223567899999999 555 99999999999999999875 44444
Q ss_pred --ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--------CCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 321 --KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 321 --~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
.+|...|.+++|+|++ .+|++|+.||.|++||++.... ...+...+.+|...|++++|+|++ .+|++|
T Consensus 251 ~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg 328 (393)
T 1erj_A 251 SGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND-EYILSG 328 (393)
T ss_dssp --CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-CEEEEE
T ss_pred CCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-CEEEEE
Confidence 5789999999999999 8999999999999999986431 122566788999999999999965 899999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCC-----CcEEEEEcCCC-ce
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQV-----PGMIVSTAADG-FN 463 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~-----~~ll~s~~~dg-i~ 463 (479)
+.|+.|++||+.... .+....+| ..|.+++|++.. ..+|++++.|+ |+
T Consensus 329 s~D~~v~iwd~~~~~-------------------------~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~ 383 (393)
T 1erj_A 329 SKDRGVLFWDKKSGN-------------------------PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKAR 383 (393)
T ss_dssp ETTSEEEEEETTTCC-------------------------EEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEE
T ss_pred eCCCeEEEEECCCCe-------------------------EEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEE
Confidence 999999999998763 22223333 479999998731 25899999998 99
Q ss_pred EEeeeccC
Q 039302 464 ILMPSNIQ 471 (479)
Q Consensus 464 iw~~~~~~ 471 (479)
||++....
T Consensus 384 iW~~~~~~ 391 (393)
T 1erj_A 384 IWKYKKIA 391 (393)
T ss_dssp EEEEEEC-
T ss_pred ECcccccC
Confidence 99987653
No 26
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=8.3e-37 Score=294.34 Aligned_cols=262 Identities=19% Similarity=0.312 Sum_probs=202.5
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|.+.|++++|+|++ .+||+|+.|++|+|||+... ....+..+.+|...|++++
T Consensus 5 ~~~~~~~H~~~V~~v~~s~~g-~~lasgs~D~~v~lwd~~~~-------------------~~~~~~~l~gH~~~V~~v~ 64 (316)
T 3bg1_A 5 INTVDTSHEDMIHDAQMDYYG-TRLATCSSDRSVKIFDVRNG-------------------GQILIADLRGHEGPVWQVA 64 (316)
T ss_dssp ---------CCEEEEEECGGG-CEEEEEETTTEEEEEEEETT-------------------EEEEEEEEECCSSCEEEEE
T ss_pred eeeecccccCeEEEeeEcCCC-CEEEEEeCCCeEEEEEecCC-------------------CcEEEEEEcCCCccEEEEE
Confidence 445667999999999999998 78999999999999998761 1134577899999999999
Q ss_pred eCCC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCc-
Q 039302 241 WNPV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT--ESDVFASCSVDGNIAIWDTRVGKS- 315 (479)
Q Consensus 241 ~s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~dg~I~iwD~~~~~~- 315 (479)
|++. +. +|++|+.|++|++||+.++.... ...+.+|...|++++|+|+ +. +|++|+.||+|++||++....
T Consensus 65 ~~~~~~~~-~l~s~s~D~~v~iWd~~~~~~~~--~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 65 WAHPMYGN-ILASCSYDRKVIIWREENGTWEK--SHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp ECCGGGSS-CEEEEETTSCEEEECCSSSCCCE--EEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCE
T ss_pred eCCCCCCC-EEEEEECCCEEEEEECCCCcceE--EEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCc
Confidence 9864 55 99999999999999997643211 1346789999999999998 55 899999999999999987632
Q ss_pred -eeeEEecCCCCEEEEEEcCCC----------------CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 316 -ALMSFKAHNADVNVISWNRLA----------------SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 316 -~~~~~~~h~~~v~~l~~~p~~----------------~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
....+.+|...|++++|+|+. ..+|++|+.|+.|++||++.... ..++..+.+|..+|++++
T Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~-~~~~~~l~~h~~~V~~v~ 219 (316)
T 3bg1_A 141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ-WKEEQKLEAHSDWVRDVA 219 (316)
T ss_dssp EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-EEEEECCBCCSSCEEEEE
T ss_pred ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-cceeeecccCCCceEEEE
Confidence 234457899999999999973 26899999999999999975421 125677899999999999
Q ss_pred EeCCC---CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEE
Q 039302 379 WSPHE---GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIV 455 (479)
Q Consensus 379 ~sp~~---~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~ 455 (479)
|+|++ +.+|++++.|++|+||++...... .....++..| ...|.+++|+|++. +|+
T Consensus 220 ~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~------------------~~~~~~~~~~--~~~v~~v~~sp~g~-~la 278 (316)
T 3bg1_A 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSN------------------TWSPKLLHKF--NDVVWHVSWSITAN-ILA 278 (316)
T ss_dssp CCCCSSCSCCEEEEEETTCEEEEEECSSTTCC------------------CCBCCEEEEC--SSCEEEEEECTTTC-CEE
T ss_pred ecCCCCCCCceEEEEcCCCeEEEEEccCcccc------------------chhhhhhhcC--CCcEEEEEEcCCCC-EEE
Confidence 99964 379999999999999999763210 1112334444 35799999999996 667
Q ss_pred EEcCCC-ceEEeee
Q 039302 456 STAADG-FNILMPS 468 (479)
Q Consensus 456 s~~~dg-i~iw~~~ 468 (479)
+++.|+ |++|+..
T Consensus 279 s~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 279 VSGGDNKVTLWKES 292 (316)
T ss_dssp EEESSSCEEEEEEC
T ss_pred EEcCCCeEEEEEEC
Confidence 777776 9999975
No 27
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-36 Score=307.08 Aligned_cols=343 Identities=11% Similarity=0.056 Sum_probs=235.6
Q ss_pred cccccCceeeEEEeeCCCCCCcccCCceEEEEEeec--------------CCCCCCceEEEEEeeecCCccccCCCCCCC
Q 039302 66 AFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQ--------------AEKPSWNSIGVFKVSNISGKRRELVPNKPA 131 (479)
Q Consensus 66 ~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~--------------~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~ 131 (479)
.+.++.+..+++|.|+..+..+.. ...+|++|+. ++++.++.|.||++..-
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~--~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~------------- 193 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGK--DIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTS------------- 193 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCS--SEEEEEEEEEC------------------CEEEEEEEEETT-------------
T ss_pred EEECCCceeEEEecccCCCCccCc--CCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCC-------------
Confidence 444578888999999853211000 1367777773 44567889999988410
Q ss_pred CCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCC-----CcEEEEEeCCceEEEEeCCCCcccc
Q 039302 132 TGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQN-----PHICASWADTGHVQVWDFRSHLNAL 206 (479)
Q Consensus 132 ~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~-----~~~lat~s~dg~V~iwd~~~~~~~~ 206 (479)
.........+.+|.+.|++|+|+|++ ..+||+++.||+|+|||+.......
T Consensus 194 ------------------------~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~ 249 (524)
T 2j04_B 194 ------------------------TLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV 249 (524)
T ss_dssp ------------------------TCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred ------------------------CCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence 00122233466788999999999972 3699999999999999997632110
Q ss_pred cccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEE
Q 039302 207 AESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDL 286 (479)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l 286 (479)
... .....+..++.+|...|++++|++.+ .|++|+.||+|++||+.++... ...+.+|...|++|
T Consensus 250 ~~~----------~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~---~~~~~~H~~~V~sv 314 (524)
T 2j04_B 250 HVF----------KMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVP---SFYDQVHDSYILSV 314 (524)
T ss_dssp SEE----------ECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSC---SEEEECSSSCEEEE
T ss_pred ccc----------eeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCc---eEEeecccccEEEE
Confidence 000 00134567889999999999999853 8999999999999999865321 23467899999999
Q ss_pred --EECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC--CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCc
Q 039302 287 --QWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDS 362 (479)
Q Consensus 287 --~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~--~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~ 362 (479)
.|+|++.++|||||.||+|+|||+++.+ +...+.+|.. .|.+++|+|++ ..|++++.|++|++||++...
T Consensus 315 ~~~~s~~g~~~laS~S~D~tvklWD~~~~~-~~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~---- 388 (524)
T 2j04_B 315 STAYSDFEDTVVSTVAVDGYFYIFNPKDIA-TTKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAF---- 388 (524)
T ss_dssp EEECCTTSCCEEEEEETTSEEEEECGGGHH-HHCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTT----
T ss_pred EEEcCCCCCeEEEEeccCCeEEEEECCCCC-cccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECcccc----
Confidence 5678773499999999999999999875 4555666653 58899999998 789999999999999999987
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChH-H-HHHHhh--hcccccCC-------------CC
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEE-E-EAEFKA--KTREQVNA-------------PE 425 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~-~-~~~~~~--~~~~~~~~-------------~~ 425 (479)
.+..+.+|...|++|+|+|++ .+|++|+.|++|++||+....... . ...... ........ ..
T Consensus 389 ~~~~l~gH~~~V~sva~Sp~g-~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~ 467 (524)
T 2j04_B 389 AVHPLVSRETTITAIGVSRLH-PMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVY 467 (524)
T ss_dssp CCEEEEECSSCEEEEECCSSC-CBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCC
T ss_pred cceeeecCCCceEEEEeCCCC-CeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceec
Confidence 677888999999999999965 899999999999999986532110 0 000000 00000000 00
Q ss_pred CC---CCceEEeecCCCCeeeEEEeCCCC--cEEEEEcCCC-ceEEeeec
Q 039302 426 DL---PPQLLFIHQGQKDLKELHWHTQVP--GMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 426 ~~---p~~l~~~h~g~~~V~~v~w~p~~~--~ll~s~~~dg-i~iw~~~~ 469 (479)
.. ...+.....+...|.+|+|+|+++ .++|+++.+| |+||++.-
T Consensus 468 ~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 468 PLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp C-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 00 111222222335799999999963 5899999988 99999753
No 28
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-35 Score=283.50 Aligned_cols=264 Identities=20% Similarity=0.286 Sum_probs=201.8
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe-cC-CCCceE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF-GG-HKDEGY 237 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~ 237 (479)
.+...+.+|.+.|+++.|+|+ +||+|+.||+|+|||+... ....+..+ .+ |...|+
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~-------------------~~~~~~~~~~~~h~~~v~ 62 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYD-------------------DFTLIDVLDETAHKKAIR 62 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSS-------------------CCEEEEEECTTCCCSCEE
T ss_pred ccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCC-------------------CeEEEEEEecCCccCCEE
Confidence 344578899999999999985 8999999999999999762 11233444 34 999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCcc---ccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATW---NVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~---~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
+++|+|++. +|++|+.|++|+||++...... ......+.+|...|.+++|+|++. +|++|+.|++|+|||++...
T Consensus 63 ~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~ 140 (330)
T 2hes_X 63 SVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESG 140 (330)
T ss_dssp EEEECTTSS-EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTC
T ss_pred EEEECCCCC-EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCC
Confidence 999999997 9999999999999998542210 011234678999999999999998 99999999999999996432
Q ss_pred ---ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC-CCEEEEE
Q 039302 315 ---SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-GSTLAVS 390 (479)
Q Consensus 315 ---~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-~~~las~ 390 (479)
.++..+.+|...|++++|+|++ .+|++|+.|++|++||++... ..++..+.+|...|++++|+|+. +.+|++|
T Consensus 141 ~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 217 (330)
T 2hes_X 141 EEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDD--WECVAVLNGHEGTVWSSDFDKTEGVFRLCSG 217 (330)
T ss_dssp CCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECCSSSSCEEEEE
T ss_pred CCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCC--eeEEEEccCCCCcEEEEEecCCCCeeEEEEE
Confidence 2556778999999999999998 899999999999999987652 12688899999999999999963 4689999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE-Eeec-CCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL-FIHQ-GQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~-~~h~-g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
+.|++|++||+....... ....... .... +...|.+++|++.+ +|++++.|+ |+||+.
T Consensus 218 s~D~~v~iw~~~~~~~~~-----------------~~~~~~~~~~~~~h~~~v~~v~~s~~~--~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 218 SDDSTVRVWKYMGDDEDD-----------------QQEWVCEAILPDVHKRQVYNVAWGFNG--LIASVGADGVLAVYEE 278 (330)
T ss_dssp ETTSCEEEEEEEEECTTS-----------------CEEEEEEEECCSCCSSCEEEEEECTTS--CEEEEETTSCEEEEEE
T ss_pred eCCCeEEEEEecCCCccc-----------------cceeEEeeecccccccceEEEEEcCCC--EEEEEeCCCEEEEEEc
Confidence 999999999997642100 0000111 1111 23479999999764 677888887 999987
Q ss_pred ec
Q 039302 468 SN 469 (479)
Q Consensus 468 ~~ 469 (479)
..
T Consensus 279 ~~ 280 (330)
T 2hes_X 279 VD 280 (330)
T ss_dssp ET
T ss_pred CC
Confidence 54
No 29
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3e-35 Score=287.06 Aligned_cols=271 Identities=20% Similarity=0.343 Sum_probs=209.4
Q ss_pred eeEEEEecCCc-ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 160 ILQLRKVAHQG-CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 160 ~~~~~~~~H~~-~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
.+...+.+|.+ .|++++|+|++ .+||+|+.||+|+|||+..... ........+|...|.+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g-~~las~~~D~~i~iw~~~~~~~------------------~~~~~~~~~h~~~v~~ 66 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAG-TLLASCGGDRRIRIWGTEGDSW------------------ICKSVLSEGHQRTVRK 66 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTS-SCEEEEETTSCEEEEEEETTEE------------------EEEEEECSSCSSCEEE
T ss_pred EEeeeecCCCCCcEEEEEECCCC-CEEEEEcCCCeEEEEEcCCCcc------------------eeeeeeccccCCcEEE
Confidence 34456789988 99999999999 7889999999999999876210 0011223689999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--e
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--A 316 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~ 316 (479)
++|+|++. +|++|+.|+.|+||++....... ...+.+|...|.+++|+|++. +|++|+.|++|++||++.... +
T Consensus 67 ~~~sp~g~-~l~s~s~D~~v~iw~~~~~~~~~--~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 67 VAWSPCGN-YLASASFDATTCIWKKNQDDFEC--VTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEEECCC-EEE--EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEE
T ss_pred EEECCCCC-EEEEEECCCcEEEEEccCCCeEE--EEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEE
Confidence 99999998 99999999999999987653211 245778999999999999998 999999999999999987642 4
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+..+..|...|++++|+|++ .+|++|+.|+.|++||++... ..+...+.+|...|++++|+|++ .+|++++.|++|
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~--~~~~~~~~~h~~~v~~l~~sp~g-~~l~s~s~D~~v 218 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDD--WVCCATLEGHESTVWSLAFDPSG-QRLASCSDDRTV 218 (345)
T ss_dssp EEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTE--EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCE
T ss_pred EEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCC--EEEEEEecCCCCceEEEEECCCC-CEEEEEeCCCeE
Confidence 55678899999999999999 899999999999999998764 12457889999999999999965 999999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCC-CceEEeec--CCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLP-PQLLFIHQ--GQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~l~~~h~--g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
+||++....... ........+ ...+.... +...|.+++|+|.+. +|++++.|+ +++|+...
T Consensus 219 ~iW~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~-~l~s~~~d~~i~vw~~~~ 283 (345)
T 3fm0_A 219 RIWRQYLPGNEQ-----------GVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG-ALATACGDDAIRVFQEDP 283 (345)
T ss_dssp EEEEEECTTCTT-----------CCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC-CEEEEETTSCEEEEEECT
T ss_pred EEeccccCCCCc-----------cceeeccCCccceeEEecCCCCCcEEEEEEecCCC-EEEEEeCCCeEEEEEeCC
Confidence 999975542110 000000000 01111212 224699999999986 555555555 99998754
No 30
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.5e-35 Score=279.28 Aligned_cols=256 Identities=23% Similarity=0.336 Sum_probs=214.5
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
...+...+.+|.+.|++++|+|++ .+||+|+.||.|+||++.. .+....+.+|...|.
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~---------------------~~~~~~~~~h~~~v~ 69 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPNG-EWLASSSADKLIKIWGAYD---------------------GKFEKTISGHKLGIS 69 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEE
T ss_pred CceeEEEEcccCCcEEEEEECCCC-CEEEEeeCCCeEEEEeCCC---------------------cccchhhccCCCceE
Confidence 345667889999999999999998 7889999999999999876 566778899999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++|+|++. +|++|+.||.|++||+.++... ..+.+|...|.+++|+|++. +|++|+.||.|++||+++++ ++
T Consensus 70 ~~~~~~~~~-~l~s~~~d~~i~vwd~~~~~~~----~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~-~~ 142 (312)
T 4ery_A 70 DVAWSSDSN-LLVSASDDKTLKIWDVSSGKCL----KTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGK-CL 142 (312)
T ss_dssp EEEECTTSS-EEEEEETTSEEEEEETTTCCEE----EEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCC-EE
T ss_pred EEEEcCCCC-EEEEECCCCEEEEEECCCCcEE----EEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCE-EE
Confidence 999999997 9999999999999999876542 45778999999999999998 99999999999999999875 67
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
..+..|...|.+++|+|++ .+|++|+.||.|++||+++.. .+..+ ..+..++..++|+|++ .+|++++.|+.|
T Consensus 143 ~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i 216 (312)
T 4ery_A 143 KTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQ----CLKTLIDDDNPPVSFVKFSPNG-KYILAATLDNTL 216 (312)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC----EEEEECCSSCCCEEEEEECTTS-SEEEEEETTTEE
T ss_pred EEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc----eeeEEeccCCCceEEEEECCCC-CEEEEEcCCCeE
Confidence 7888999999999999998 899999999999999999877 56555 4567789999999965 899999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++||++..... ..+..|..........|++.+..+|++++.|+ |++|++.+.
T Consensus 217 ~iwd~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~ 269 (312)
T 4ery_A 217 KLWDYSKGKCL----------------------KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK 269 (312)
T ss_dssp EEEETTTTEEE----------------------EEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC
T ss_pred EEEECCCCcEE----------------------EEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc
Confidence 99999876310 11222322223344566655556889999888 999987543
No 31
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=9.5e-35 Score=305.25 Aligned_cols=272 Identities=20% Similarity=0.264 Sum_probs=211.2
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+||+|+.||+|+|||+... .......+.+|...|.+++|+
T Consensus 53 ~~~~~h~~~v~~~~~spdg-~~lasg~~d~~v~lWd~~~~-------------------~~~~~~~~~~~~~~v~~v~fs 112 (611)
T 1nr0_A 53 EIYTEHSHQTTVAKTSPSG-YYCASGDVHGNVRIWDTTQT-------------------THILKTTIPVFSGPVKDISWD 112 (611)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEESSST-------------------TCCEEEEEECSSSCEEEEEEC
T ss_pred eEecCCCCceEEEEECCCC-cEEEEEeCCCCEEEeECCCC-------------------cceeeEeecccCCceEEEEEC
Confidence 4677999999999999999 89999999999999998651 123456788999999999999
Q ss_pred CCCCCeEEEEeCC----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 243 PVAPGRLVSGDCN----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 243 ~~~~~~l~sg~~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
|++. +|++++.+ +.|++||... . ...+.+|...|++++|+|++...|++|+.|++|++||.+..+ +..
T Consensus 113 ~dg~-~l~~~~~~~~~~~~v~~wd~~~--~----~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~-~~~ 184 (611)
T 1nr0_A 113 SESK-RIAAVGEGRERFGHVFLFDTGT--S----NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK-FKS 184 (611)
T ss_dssp TTSC-EEEEEECCSSCSEEEEETTTCC--B----CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE-EEE
T ss_pred CCCC-EEEEEECCCCceeEEEEeeCCC--C----cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe-Eee
Confidence 9998 88888765 4789998532 2 245789999999999999988679999999999999998764 677
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-------cCCCCeEEEEEeCCCCCEEEEEe
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-------YHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-------~h~~~I~~v~~sp~~~~~las~s 391 (479)
.+.+|...|++++|+|++ .+||+|+.|++|++||++++. .+..+. +|...|++++|+|++ .+|++++
T Consensus 185 ~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~g~----~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s 258 (611)
T 1nr0_A 185 TFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVDGT----KTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASAS 258 (611)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCC----EEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEE
T ss_pred eeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCCCc----EeeeeccccccccccCCCEEEEEECCCC-CEEEEEe
Confidence 889999999999999999 899999999999999999877 677774 799999999999965 9999999
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhccccc---CCC---------------CCCCCceEEeecCC-CCeeeEEEeCCCCc
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQV---NAP---------------EDLPPQLLFIHQGQ-KDLKELHWHTQVPG 452 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~---~~~---------------~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ 452 (479)
.|++|++||+.................... ... ............+| ..|++++|+|++.
T Consensus 259 ~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~- 337 (611)
T 1nr0_A 259 ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK- 337 (611)
T ss_dssp TTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-
T ss_pred CCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-
Confidence 999999999987532100000000000000 000 00001122222344 4799999999986
Q ss_pred EEEEEcCCC-ceEEeeec
Q 039302 453 MIVSTAADG-FNILMPSN 469 (479)
Q Consensus 453 ll~s~~~dg-i~iw~~~~ 469 (479)
+|++++.|+ |++|++.+
T Consensus 338 ~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 338 TLFSADAEGHINSWDIST 355 (611)
T ss_dssp EEEEEETTSCEEEEETTT
T ss_pred EEEEEeCCCcEEEEECCC
Confidence 777888777 99999754
No 32
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.5e-34 Score=281.79 Aligned_cols=257 Identities=18% Similarity=0.301 Sum_probs=207.7
Q ss_pred eeEEEEecCCcceeEEEE-----ecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC
Q 039302 160 ILQLRKVAHQGCVNRIRA-----MSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD 234 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~-----~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 234 (479)
.+...+.+|.+.|++++| ++.+..+|+||+.||+|+|||+....... ....+...+.+|..
T Consensus 12 ~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~--------------~~~~~~~~l~~h~~ 77 (343)
T 2xzm_R 12 VKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNG--------------YFGIPHKALTGHNH 77 (343)
T ss_dssp EEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSS--------------BSEEEEEEECCCSS
T ss_pred eeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCccc--------------ccccccchhccCCC
Confidence 344568899999999999 66333799999999999999987521100 01245677899999
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.|.+++|+|++. +|++|+.|++|++||+.++... ..+.+|...|.+++|+|++. +|++|+.|++|++||++..
T Consensus 78 ~V~~~~~~~~~~-~l~s~s~D~~v~lwd~~~~~~~----~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~- 150 (343)
T 2xzm_R 78 FVSDLALSQENC-FAISSSWDKTLRLWDLRTGTTY----KRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGE- 150 (343)
T ss_dssp CEEEEEECSSTT-EEEEEETTSEEEEEETTSSCEE----EEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSC-
T ss_pred ceEEEEECCCCC-EEEEEcCCCcEEEEECCCCcEE----EEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCC-
Confidence 999999999998 9999999999999999876542 45778999999999999998 9999999999999999843
Q ss_pred ceeeEE---ecCCCCEEEEEEcCCCC---------cEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 315 SALMSF---KAHNADVNVISWNRLAS---------CLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 315 ~~~~~~---~~h~~~v~~l~~~p~~~---------~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
..... ..|...|.+++|+|.+. .+|++|+.||.|++||.+ .. ....+.+|...|++++|+|+
T Consensus 151 -~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~----~~~~~~~h~~~v~~~~~s~~ 224 (343)
T 2xzm_R 151 -CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQ----IRYTFKAHESNVNHLSISPN 224 (343)
T ss_dssp -EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TE----EEEEEECCSSCEEEEEECTT
T ss_pred -ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-Cc----eeEEEcCccccceEEEECCC
Confidence 23333 37889999999999862 589999999999999943 33 67788999999999999996
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCc
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGF 462 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi 462 (479)
+ .+|++|+.|+.|++||+..... +...+.+. ..|.+++|+|++. +++++.++++
T Consensus 225 g-~~l~sgs~dg~v~iwd~~~~~~----------------------~~~~~~~~--~~v~~v~~sp~~~-~la~~~d~~v 278 (343)
T 2xzm_R 225 G-KYIATGGKDKKLLIWDILNLTY----------------------PQREFDAG--STINQIAFNPKLQ-WVAVGTDQGV 278 (343)
T ss_dssp S-SEEEEEETTCEEEEEESSCCSS----------------------CSEEEECS--SCEEEEEECSSSC-EEEEEESSCE
T ss_pred C-CEEEEEcCCCeEEEEECCCCcc----------------------cceeecCC--CcEEEEEECCCCC-EEEEECCCCE
Confidence 5 9999999999999999954421 12223232 4699999999985 6777777779
Q ss_pred eEEeeec
Q 039302 463 NILMPSN 469 (479)
Q Consensus 463 ~iw~~~~ 469 (479)
++|++..
T Consensus 279 ~iw~~~~ 285 (343)
T 2xzm_R 279 KIFNLMT 285 (343)
T ss_dssp EEEESSS
T ss_pred EEEEeCC
Confidence 9998754
No 33
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.3e-35 Score=291.46 Aligned_cols=262 Identities=19% Similarity=0.342 Sum_probs=216.6
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
...|.+.|++++|+|++ .+|++|+.||.|+||++..... ....+..+.+|...|.+++|+|+
T Consensus 63 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~v~vw~~~~~~~-----------------~~~~~~~~~~h~~~v~~~~~~~~ 124 (416)
T 2pm9_A 63 SLQVDSKFNDLDWSHNN-KIIAGALDNGSLELYSTNEANN-----------------AINSMARFSNHSSSVKTVKFNAK 124 (416)
T ss_dssp CCCCSSCEEEEEECSSS-SCEEEEESSSCEEEECCSSTTS-----------------CCCEEEECCCSSSCCCEEEECSS
T ss_pred EEecCCceEEEEECCCC-CeEEEEccCCeEEEeecccccc-----------------cccchhhccCCccceEEEEEcCC
Confidence 34689999999999998 6888999999999999986211 12467788899999999999998
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCc-----cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 245 APGRLVSGDCNSCIHLWEPASDAT-----WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~-----~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+..+|++|+.||.|++||+.+... .......+..|...|.+++|+|++..+|++++.||.|++||+++.+ .+..
T Consensus 125 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-~~~~ 203 (416)
T 2pm9_A 125 QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-EVIH 203 (416)
T ss_dssp STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE-EEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC-cceE
Confidence 434999999999999999987651 1111234567999999999999965599999999999999999875 5666
Q ss_pred EecC------CCCEEEEEEcCCCCcEEEEEeCCC---eEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCCCCCEEEE
Q 039302 320 FKAH------NADVNVISWNRLASCLLASGSDDG---TFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 320 ~~~h------~~~v~~l~~~p~~~~~l~sgs~dg---~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~~~~~las 389 (479)
+..+ ...|++++|+|++..+|++++.|+ .|++||+++... ++..+. +|...|++++|+|.++.+|++
T Consensus 204 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s 280 (416)
T 2pm9_A 204 LSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT---PLQTLNQGHQKGILSLDWCHQDEHLLLS 280 (416)
T ss_dssp ECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS---CSBCCCSCCSSCEEEEEECSSCSSCEEE
T ss_pred EeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC---CcEEeecCccCceeEEEeCCCCCCeEEE
Confidence 6655 788999999999878999999999 999999998743 677788 899999999999966699999
Q ss_pred EeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 390 SSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
++.|+.|++||+.... .+.....+...|.+++|+|+++.+|++++.|+ |++|++.
T Consensus 281 ~~~dg~v~~wd~~~~~------------------------~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 281 SGRDNTVLLWNPESAE------------------------QLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQ 336 (416)
T ss_dssp EESSSEEEEECSSSCC------------------------EEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESC
T ss_pred EeCCCCEEEeeCCCCc------------------------cceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEcc
Confidence 9999999999998763 12222222357999999999977999999998 9999998
Q ss_pred ccCC
Q 039302 469 NIQS 472 (479)
Q Consensus 469 ~~~~ 472 (479)
+...
T Consensus 337 ~~~~ 340 (416)
T 2pm9_A 337 NLTN 340 (416)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7643
No 34
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=295.19 Aligned_cols=323 Identities=15% Similarity=0.247 Sum_probs=236.5
Q ss_pred ccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCC
Q 039302 67 FHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDD 146 (479)
Q Consensus 67 ~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (479)
....-+..++.|-|+.. +|++|+ .++.|.||++....
T Consensus 64 ~~~~~~v~~~~~s~~~~-----------~l~~~~-----~dg~v~vw~~~~~~--------------------------- 100 (416)
T 2pm9_A 64 LQVDSKFNDLDWSHNNK-----------IIAGAL-----DNGSLELYSTNEAN--------------------------- 100 (416)
T ss_dssp CCCSSCEEEEEECSSSS-----------CEEEEE-----SSSCEEEECCSSTT---------------------------
T ss_pred EecCCceEEEEECCCCC-----------eEEEEc-----cCCeEEEeeccccc---------------------------
Confidence 34455677888877632 467664 57799999773100
Q ss_pred CCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCc
Q 039302 147 DSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL 226 (479)
Q Consensus 147 d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (479)
........+.+|.+.|++++|+|++..+|++++.||.|++||+.......... ....+
T Consensus 101 ----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~------------~~~~~ 158 (416)
T 2pm9_A 101 ----------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY------------TPLTP 158 (416)
T ss_dssp ----------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC------------CCBCC
T ss_pred ----------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc------------ccccc
Confidence 01123456788999999999999955899999999999999998732100000 00111
Q ss_pred EEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCC--CCcccCCCcEEEEEECCCCCcEEEEEeCCC-
Q 039302 227 VKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDP--NPFIGHAASVEDLQWSPTESDVFASCSVDG- 303 (479)
Q Consensus 227 ~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~--~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg- 303 (479)
..+.+|...|.+++|+|++..+|++|+.||.|++||+.+........ ....+|...|.+++|+|++..+|++++.|+
T Consensus 159 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 159 GQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238 (416)
T ss_dssp CCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred ccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence 23467889999999999954499999999999999998754322100 112234789999999999866999999999
Q ss_pred --cEEEEEcCCCCceeeEEe-cCCCCEEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 304 --NIAIWDTRVGKSALMSFK-AHNADVNVISWNR-LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 304 --~I~iwD~~~~~~~~~~~~-~h~~~v~~l~~~p-~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
.|++||+++...++..+. +|...|++++|+| ++ .+|++|+.||.|++||+++.+ ++..+..|...|++++|
T Consensus 239 ~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~~l~s~~~dg~v~~wd~~~~~----~~~~~~~~~~~v~~~~~ 313 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE-HLLLSSGRDNTVLLWNPESAE----QLSQFPARGNWCFKTKF 313 (416)
T ss_dssp SCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS-SCEEEEESSSEEEEECSSSCC----EEEEEECSSSCCCCEEE
T ss_pred CceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC-CeEEEEeCCCCEEEeeCCCCc----cceeecCCCCceEEEEE
Confidence 999999998755677777 8999999999999 55 899999999999999999887 89999999999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC------------------C-CC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG------------------Q-KD 440 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g------------------~-~~ 440 (479)
+|+++.+|++++.|+.|+||++........... .......++..++.|.+ + ..
T Consensus 314 s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (416)
T 2pm9_A 314 APEAPDLFACASFDNKIEVQTLQNLTNTLDEQE--------TETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP 385 (416)
T ss_dssp CTTCTTEEEECCSSSEEEEEESCCCCCSSCC------------------------------CCSCCCSSCCCCCSTTCCC
T ss_pred CCCCCCEEEEEecCCcEEEEEccCCCCCccccc--------ccccccCCcccccccccccccccccccccccCCccccCC
Confidence 997668999999999999999987653211000 00111223334444433 2 35
Q ss_pred eeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 441 LKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 441 V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
+.+++|+|++. +|++++.|+ |+||++.
T Consensus 386 ~~~~~~s~dg~-~la~~~~d~~v~~w~~~ 413 (416)
T 2pm9_A 386 SPAAHWAFGGK-LVQITPDGKGVSITNPK 413 (416)
T ss_dssp SCCCEEETTTE-EECBCTTSSCBCCBCCC
T ss_pred ccceEEeeCCe-EEEEeCCCCeEEEEEec
Confidence 78999999995 888888888 9999875
No 35
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.4e-34 Score=276.48 Aligned_cols=315 Identities=16% Similarity=0.265 Sum_probs=230.4
Q ss_pred ccCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCC
Q 039302 69 IGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDS 148 (479)
Q Consensus 69 ~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 148 (479)
..-+..++.|.|+.. .++++|+.. ..++.|.||++..
T Consensus 17 h~~~v~~~~~~p~~~----------~l~~~~s~~--~~d~~v~iw~~~~------------------------------- 53 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSA----------KFVTMGNFA--RGTGVIQLYEIQH------------------------------- 53 (357)
T ss_dssp CSSCEEEEEECTTSS----------EEEEEEC----CCCEEEEEEEECS-------------------------------
T ss_pred CCCceEEEEEcCCCc----------eEEEecCcc--CCCcEEEEEeCCC-------------------------------
Confidence 345667888888732 345565321 1378999998831
Q ss_pred ccccCCCCCCceeEEEEecCCcceeEEEEecCC--CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCc
Q 039302 149 DDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQN--PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL 226 (479)
Q Consensus 149 ~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (479)
.........+|.+.|++++|+|++ ..+|++|+.||.|++||+.. ...++
T Consensus 54 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~--------------------~~~~~ 104 (357)
T 3i2n_A 54 ---------GDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEA--------------------PEMPV 104 (357)
T ss_dssp ---------SSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTS--------------------CSSCS
T ss_pred ---------CcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCC--------------------CCccE
Confidence 112334556899999999999983 37888999999999999987 12378
Q ss_pred EEecCCCCceEEEE------eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccC----CCcEEEEE----ECCCC
Q 039302 227 VKFGGHKDEGYAID------WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH----AASVEDLQ----WSPTE 292 (479)
Q Consensus 227 ~~~~~h~~~v~~l~------~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~l~----~sp~~ 292 (479)
..+.+|...|.+++ |+|++. +|++|+.||.|++||+.+..... ..+..| ...|.+++ |+|++
T Consensus 105 ~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~ 180 (357)
T 3i2n_A 105 YSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPV---ANMEPVQGENKRDCWTVAFGNAYNQEE 180 (357)
T ss_dssp EEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCS---EEECCCTTSCCCCEEEEEEECCCC-CC
T ss_pred EEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcc---eeccccCCCCCCceEEEEEEeccCCCC
Confidence 88999999999995 467787 99999999999999998765222 223223 34899998 78888
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcC---CCCcEEEEEeCCCeEEEEeCCCCCCCCc-eEEEee
Q 039302 293 SDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNR---LASCLLASGSDDGTFSIHDLRLLKGGDS-VVAHFE 368 (479)
Q Consensus 293 ~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p---~~~~~l~sgs~dg~i~iwDlr~~~~~~~-~~~~~~ 368 (479)
. +|++++.||.|++||+++.+ ......|...|.+++|+| ++ .+|++|+.||.|++||+++...... ....+.
T Consensus 181 ~-~l~~~~~d~~i~i~d~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 256 (357)
T 3i2n_A 181 R-VVCAGYDNGDIKLFDLRNMA--LRWETNIKNGVCSLEFDRKDISM-NKLVATSLEGKFHVFDMRTQHPTKGFASVSEK 256 (357)
T ss_dssp C-EEEEEETTSEEEEEETTTTE--EEEEEECSSCEEEEEESCSSSSC-CEEEEEESTTEEEEEEEEEEETTTEEEEEEEE
T ss_pred C-EEEEEccCCeEEEEECccCc--eeeecCCCCceEEEEcCCCCCCC-CEEEEECCCCeEEEEeCcCCCcccceeeeccC
Confidence 8 99999999999999999875 344577889999999999 77 8999999999999999988763111 112345
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC--CCCceEEeecCC-CCeeeEE
Q 039302 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED--LPPQLLFIHQGQ-KDLKELH 445 (479)
Q Consensus 369 ~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~l~~~h~g~-~~V~~v~ 445 (479)
+|...|++++|+|++..+|++++.||.|++||++........ ........ .....+....+| ..|++++
T Consensus 257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~ 328 (357)
T 3i2n_A 257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK--------DSEGIEMGVAGSVSLLQNVTLSTQPISSLD 328 (357)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C--------CTTSCCCCCCCEEEEEEEEECCSSCEEEEE
T ss_pred CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc--------cCCCCccccccccceeeccccCCCCeeEEE
Confidence 899999999999976448999999999999999876432100 00000000 011233333334 4799999
Q ss_pred EeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 446 WHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 446 w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
|+|++..++++++.|+ |+||++.++.
T Consensus 329 ~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 329 WSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp ECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred EcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 9999987776888888 9999987653
No 36
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.5e-34 Score=306.64 Aligned_cols=254 Identities=20% Similarity=0.276 Sum_probs=215.1
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|.+.|++|+|+|++..+|+||+.||+|+||++...... .......+.+|...|.+++
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~----------------~~~~~~~~~~h~~~v~~v~ 437 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA----------------YGVAQRRLTGHSHFVEDVV 437 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC----------------SCEEEEEEECCSSCEEEEE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc----------------cccccceecCCCCcEEEEE
Confidence 345688999999999999988789999999999999999762111 1234567889999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
|+|++. +|++|+.||.|+|||+.++.. ...+.+|...|.+++|+|++. +|++|+.|++|+|||++... ...+
T Consensus 438 ~s~~g~-~l~sgs~Dg~v~vwd~~~~~~----~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~--~~~~ 509 (694)
T 3dm0_A 438 LSSDGQ-FALSGSWDGELRLWDLAAGVS----TRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGEC--KYTI 509 (694)
T ss_dssp ECTTSS-EEEEEETTSEEEEEETTTTEE----EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCE--EEEE
T ss_pred ECCCCC-EEEEEeCCCcEEEEECCCCcc----eeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCc--ceee
Confidence 999998 999999999999999987543 245789999999999999998 89999999999999987642 2222
Q ss_pred ----ecCCCCEEEEEEcCCC-CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 321 ----KAHNADVNVISWNRLA-SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 321 ----~~h~~~v~~l~~~p~~-~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
.+|...|++++|+|++ ..+|++|+.|++|++||+++.. ....+.+|...|++++|+|++ .+|++|+.|++
T Consensus 510 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~ 584 (694)
T 3dm0_A 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK----LRSTLAGHTGYVSTVAVSPDG-SLCASGGKDGV 584 (694)
T ss_dssp CSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSB
T ss_pred ccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc----EEEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCe
Confidence 4688899999999986 3589999999999999999877 788999999999999999965 99999999999
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
|+|||+.... .+....++..|.+++|+|++. +++++++++|+||++.+
T Consensus 585 i~iwd~~~~~-------------------------~~~~~~~~~~v~~~~~sp~~~-~l~~~~~~~i~iwd~~~ 632 (694)
T 3dm0_A 585 VLLWDLAEGK-------------------------KLYSLEANSVIHALCFSPNRY-WLCAATEHGIKIWDLES 632 (694)
T ss_dssp CEEEETTTTE-------------------------EEECCBCSSCEEEEEECSSSS-EEEEEETTEEEEEETTT
T ss_pred EEEEECCCCc-------------------------eEEEecCCCcEEEEEEcCCCc-EEEEEcCCCEEEEECCC
Confidence 9999998763 333444456799999999984 77777777799998754
No 37
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.5e-34 Score=279.58 Aligned_cols=279 Identities=14% Similarity=0.194 Sum_probs=211.2
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ .+|++++.||.|++||+... .......+..|...|.+++
T Consensus 44 ~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~~~~~~~v~~~~ 103 (372)
T 1k8k_C 44 QVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGR-------------------TWKPTLVILRINRAARCVR 103 (372)
T ss_dssp EEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETT-------------------EEEEEEECCCCSSCEEEEE
T ss_pred eeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCC-------------------eeeeeEEeecCCCceeEEE
Confidence 445677999999999999988 78889999999999999762 1122344567889999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC---------
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR--------- 311 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~--------- 311 (479)
|+|++. +|++|+.||.|++||+..............+|...|.+++|+|++. +|++++.||.|++||++
T Consensus 104 ~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~ 181 (372)
T 1k8k_C 104 WAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPA 181 (372)
T ss_dssp ECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred ECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEccccccccccc
Confidence 999997 9999999999999999876542222233467899999999999988 99999999999999975
Q ss_pred ---------CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 312 ---------VGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 312 ---------~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.+ .++..+..|...|++++|+|++ .+|++++.||.|++||+++.+ ++..+..|..+|++++|+|+
T Consensus 182 ~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~~ 255 (372)
T 1k8k_C 182 PTPWGSKMPFG-ELMFESSSSCGWVHGVCFSANG-SRVAWVSHDSTVCLADADKKM----AVATLASETLPLLAVTFITE 255 (372)
T ss_dssp CBTTBSCCCTT-CEEEECCCCSSCEEEEEECSSS-SEEEEEETTTEEEEEEGGGTT----EEEEEECSSCCEEEEEEEET
T ss_pred ccccccccchh-hheEecCCCCCeEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc----eeEEEccCCCCeEEEEEecC
Confidence 23 3666778899999999999998 899999999999999999887 89999999999999999995
Q ss_pred CCCEEEEEeCCCcEEEEECCC--CCCh--------HH--------HHHHhhhcccccCCCCCCCCceEEeecCC-CCeee
Q 039302 383 EGSTLAVSSADNQLTIWDLSL--EKDE--------EE--------EAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKE 443 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~--~~~~--------~~--------~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~ 443 (479)
+ .+|++| .|+.|++|++.. +.-. .. ...+.... ........|........+| ..|++
T Consensus 256 ~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~v~~ 331 (372)
T 1k8k_C 256 S-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD--KKASSEGSAAAGAGLDSLHKNSVSQ 331 (372)
T ss_dssp T-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCC--CCC---------CCCSSSSSSCEEE
T ss_pred C-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcc--cccccccCccccccccccccCCcce
Confidence 5 777776 899999999987 2100 00 00000000 0000000000001111233 47999
Q ss_pred EEEeCCCC---cEEEEEcCCC-ceEEeeeccC
Q 039302 444 LHWHTQVP---GMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 444 v~w~p~~~---~ll~s~~~dg-i~iw~~~~~~ 471 (479)
++|++... .+|++++.|| |++|++.+..
T Consensus 332 ~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 332 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp EEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred eEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 99886654 5899999999 9999987763
No 38
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-34 Score=280.40 Aligned_cols=261 Identities=19% Similarity=0.290 Sum_probs=212.2
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+||+|+.||.|+||++... ....+..+.+|...|++++|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~~~h~~~v~~~~~~ 64 (379)
T 3jrp_A 5 VIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWRVDWA 64 (379)
T ss_dssp CCEEECCCCEEEEEECSSS-SEEEEEETTSCEEEEEEETT-------------------EEEEEEEECCCSSCEEEEEEC
T ss_pred EEecCCcccEEEEEEcCCC-CEEEEEECCCcEEEEecCCC-------------------cceeeeEecCCCCcEEEEEeC
Confidence 3577999999999999998 78899999999999999741 145667888999999999999
Q ss_pred CC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCc-ee
Q 039302 243 PV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT--ESDVFASCSVDGNIAIWDTRVGKS-AL 317 (479)
Q Consensus 243 ~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~dg~I~iwD~~~~~~-~~ 317 (479)
+. +. +|++|+.||.|++||+.++.... ...+..|...|.+++|+|+ +. +|++++.||.|++||++.... ..
T Consensus 65 ~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~ 140 (379)
T 3jrp_A 65 HPKFGT-ILASCSYDGKVLIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP 140 (379)
T ss_dssp CGGGCS-EEEEEETTSCEEEEEEETTEEEE--EEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCE
T ss_pred CCCCCC-EEEEeccCCEEEEEEcCCCceeE--eeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceee
Confidence 87 66 99999999999999998754211 2446679999999999999 76 999999999999999998742 34
Q ss_pred eEEecCCCCEEEEEEcCC------------CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC--
Q 039302 318 MSFKAHNADVNVISWNRL------------ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-- 383 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~------------~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-- 383 (479)
..+..|...|++++|+|. .+.+|++|+.||.|++||++.......++..+.+|..+|++++|+|++
T Consensus 141 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 141 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp EEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred EEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCC
Confidence 566789999999999994 238999999999999999988764233567788999999999999973
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCce-EEee-cCCCCeeeEEEeCCCCcEEEEEcCCC
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQL-LFIH-QGQKDLKELHWHTQVPGMIVSTAADG 461 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l-~~~h-~g~~~V~~v~w~p~~~~ll~s~~~dg 461 (479)
+.+|++++.||.|++||+..... +... +... .+...|++++|+|++. +|++++.||
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg 278 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNEQG---------------------PWKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDN 278 (379)
T ss_dssp SEEEEEEETTSCEEEEEESSTTS---------------------CCEEEESSSSCCSSCEEEEEECSSSC-CEEEEESSS
T ss_pred CCeEEEEeCCCEEEEEeCCCCCc---------------------cceeeeeccccCCCcEEEEEEcCCCC-EEEEecCCC
Confidence 69999999999999999987631 1111 1111 1234799999999997 555555566
Q ss_pred -ceEEeeec
Q 039302 462 -FNILMPSN 469 (479)
Q Consensus 462 -i~iw~~~~ 469 (479)
|++|++..
T Consensus 279 ~i~iw~~~~ 287 (379)
T 3jrp_A 279 KVTLWKENL 287 (379)
T ss_dssp SEEEEEEEE
T ss_pred cEEEEeCCC
Confidence 99999873
No 39
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.9e-34 Score=297.86 Aligned_cols=258 Identities=16% Similarity=0.235 Sum_probs=201.2
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-------CCC
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-------GHK 233 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~h~ 233 (479)
+...+.+|.+.|++++|+|++ .+||+|+.||+|+|||+.. .+.+..+. +|.
T Consensus 182 ~~~~l~~H~~~V~~v~fspdg-~~las~s~D~~i~lwd~~~---------------------g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 182 FKSTFGEHTKFVHSVRYNPDG-SLFASTGGDGTIVLYNGVD---------------------GTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEECBCTTSSSCSSS
T ss_pred EeeeeccccCceEEEEECCCC-CEEEEEECCCcEEEEECCC---------------------CcEeeeeccccccccccC
Confidence 345678999999999999998 7999999999999999876 34444442 799
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc---------------------------------------CCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV---------------------------------------DPN 274 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~---------------------------------------~~~ 274 (479)
..|++++|+|++. +|++|+.|++|+|||+.++..... ...
T Consensus 240 ~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~ 318 (611)
T 1nr0_A 240 GSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQ 318 (611)
T ss_dssp SCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEE
T ss_pred CCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcce
Confidence 9999999999998 999999999999999976432110 011
Q ss_pred CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE----------------------------------
Q 039302 275 PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF---------------------------------- 320 (479)
Q Consensus 275 ~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~---------------------------------- 320 (479)
.+.+|...|++++|+|++. +|++++.|++|++||++++.. ...+
T Consensus 319 ~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~-~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~ 396 (611)
T 1nr0_A 319 VRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGIS-NRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG 396 (611)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCE-EECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred EEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCce-eeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecC
Confidence 2458999999999999998 999999999999999876531 0000
Q ss_pred ------------------------------------------------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEE
Q 039302 321 ------------------------------------------------KAHNADVNVISWNRLASCLLASGSDDGTFSIH 352 (479)
Q Consensus 321 ------------------------------------------------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iw 352 (479)
..|...+++++|+|++ .+||+|+.|++|++|
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg-~~lasgs~D~~v~lw 475 (611)
T 1nr0_A 397 GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDK-QFVAVGGQDSKVHVY 475 (611)
T ss_dssp SSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEE
T ss_pred CccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCC-CEEEEeCCCCeEEEE
Confidence 0133457899999999 899999999999999
Q ss_pred eCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE
Q 039302 353 DLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL 432 (479)
Q Consensus 353 Dlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 432 (479)
|+..... ..+.. .+|...|++|+|+|++ .+|++++.|++|++|++...... ....+.
T Consensus 476 d~~~~~~--~~~~~-~~h~~~v~~v~fspdg-~~las~s~d~~v~~w~~~~~~~~-------------------~~~~~~ 532 (611)
T 1nr0_A 476 KLSGASV--SEVKT-IVHPAEITSVAFSNNG-AFLVATDQSRKVIPYSVANNFEL-------------------AHTNSW 532 (611)
T ss_dssp EEETTEE--EEEEE-EECSSCEEEEEECTTS-SEEEEEETTSCEEEEEGGGTTEE-------------------SCCCCC
T ss_pred EccCCce--eeeec-cCCCCceEEEEECCCC-CEEEEEcCCCCEEEEEcCCCCce-------------------eeeeee
Confidence 9976541 12334 6799999999999965 99999999999999999762100 000011
Q ss_pred EeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 433 FIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 433 ~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..|. ..|.+++|+|++. +|++++.|+ |++|++...
T Consensus 533 ~~H~--~~V~~v~fspdg~-~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 533 TFHT--AKVACVSWSPDNV-RLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp CCCS--SCEEEEEECTTSS-EEEEEETTSCEEEEETTCT
T ss_pred eecc--cceeEEEECCCCC-EEEEEECCCcEEEEECCCc
Confidence 1133 5799999999996 788888888 999998653
No 40
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.9e-33 Score=296.65 Aligned_cols=269 Identities=20% Similarity=0.304 Sum_probs=207.0
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.....+.+|.+.|++++|+|++ .+|++|+.||+|+|||+.. ...+..+.+|...|.++
T Consensus 421 ~~~~~~~~h~~~v~~v~~s~~g-~~l~sgs~Dg~v~vwd~~~---------------------~~~~~~~~~h~~~v~~~ 478 (694)
T 3dm0_A 421 VAQRRLTGHSHFVEDVVLSSDG-QFALSGSWDGELRLWDLAA---------------------GVSTRRFVGHTKDVLSV 478 (694)
T ss_dssp EEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEE
T ss_pred cccceecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEECCC---------------------CcceeEEeCCCCCEEEE
Confidence 3445788999999999999998 7899999999999999987 56677889999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCceee
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+|+|++. +|++|+.|++|++||+....... ......+|...|.+++|+|++. ..|++|+.||+|++||++..+ ...
T Consensus 479 ~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-~~~ 555 (694)
T 3dm0_A 479 AFSLDNR-QIVSASRDRTIKLWNTLGECKYT-ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-LRS 555 (694)
T ss_dssp EECTTSS-CEEEEETTSCEEEECTTSCEEEE-ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC-EEE
T ss_pred EEeCCCC-EEEEEeCCCEEEEEECCCCccee-eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc-EEE
Confidence 9999998 99999999999999986532221 1234567999999999999873 489999999999999999875 677
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|...|++++|+|++ .+|++|+.||.|+|||+++.+ .+..+. +...|++++|+|++ .+|++++ |+.|+|
T Consensus 556 ~~~~h~~~v~~v~~spdg-~~l~sg~~Dg~i~iwd~~~~~----~~~~~~-~~~~v~~~~~sp~~-~~l~~~~-~~~i~i 627 (694)
T 3dm0_A 556 TLAGHTGYVSTVAVSPDG-SLCASGGKDGVVLLWDLAEGK----KLYSLE-ANSVIHALCFSPNR-YWLCAAT-EHGIKI 627 (694)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSBCEEEETTTTE----EEECCB-CSSCEEEEEECSSS-SEEEEEE-TTEEEE
T ss_pred EEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc----eEEEec-CCCcEEEEEEcCCC-cEEEEEc-CCCEEE
Confidence 889999999999999999 899999999999999999887 666665 45689999999954 6666655 667999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCC-ceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPP-QLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
||+......... .... ......... .....+.....+++++|+|++. +|++++.|| |+||++.
T Consensus 628 wd~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 628 WDLESKSIVEDL---KVDL---KAEAEKADNSGPAATKRKVIYCTSLNWSADGS-TLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EETTTTEEEEEE---CCCC---C----------------CCCCEEEEEECTTSS-EEEEEETTSEEEEEEC-
T ss_pred EECCCCCChhhh---cccc---ccccccccccccccCCceeEEeeeEEEcCCCC-EEEEEcCCCeEEEEecc
Confidence 999876321000 0000 000000000 0000011112478999999996 788888888 9999875
No 41
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.5e-33 Score=272.93 Aligned_cols=257 Identities=19% Similarity=0.263 Sum_probs=214.6
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.+...+.+|.+.|++|+|+|+++.+||||+.||+|+|||+...... ...+...+.+|...|.++
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----------------~~~~~~~l~~h~~~V~~~ 92 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----------------YGIPQRALRGHSHFVSDV 92 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----------------SEEEEEEECCCSSCEEEE
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----------------cceeeEEEeCCCCCEEEE
Confidence 4455688999999999999997789999999999999999763211 134567889999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+|+|++. +|++|+.|+.|++|+....... .....+...+..+.+++.+. +|++|+.|+.+++||++........
T Consensus 93 ~~s~dg~-~l~s~~~d~~i~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~ 166 (340)
T 4aow_A 93 VISSDGQ-FALSGSWDGTLRLWDLTTGTTT----RRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQ 166 (340)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTTTEEE----EEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEEC
T ss_pred EECCCCC-EEEEEcccccceEEeeccccee----eeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEE
Confidence 9999998 9999999999999999765432 33456677899999999988 8999999999999999877545555
Q ss_pred EecCCCCEEEEEEcCCCC-cEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 320 FKAHNADVNVISWNRLAS-CLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~-~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
..+|...+..++|++++. .++++++.|+.|++||+++.. ++..+.+|..+|++++|+|++ .+|++|+.|+.|++
T Consensus 167 ~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~----~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~i 241 (340)
T 4aow_A 167 DESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----LKTNHIGHTGYLNTVTVSPDG-SLCASGGKDGQAML 241 (340)
T ss_dssp SSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEECTTS-SEEEEEETTCEEEE
T ss_pred eccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc----eeeEecCCCCcEEEEEECCCC-CEEEEEeCCCeEEE
Confidence 678999999999988753 578899999999999999887 788999999999999999965 99999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
||++... .+....++..|..+.|+|++ .+++++.++.|++|++..
T Consensus 242 wd~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 242 WDLNEGK-------------------------HLYTLDGGDIINALCFSPNR-YWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp EETTTTE-------------------------EEEEEECSSCEEEEEECSSS-SEEEEEETTEEEEEETTT
T ss_pred EEeccCc-------------------------eeeeecCCceEEeeecCCCC-ceeeccCCCEEEEEECCC
Confidence 9998763 34444455789999999987 466655555599998754
No 42
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2e-32 Score=264.27 Aligned_cols=249 Identities=14% Similarity=0.248 Sum_probs=208.0
Q ss_pred ceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 159 p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
+.......+|...|++++|+|++ .+|++++.+|.|++||+... .......+..|...+.+
T Consensus 87 ~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~-------------------~~~~~~~~~~~~~~i~~ 146 (337)
T 1gxr_A 87 PVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAP-------------------TPRIKAELTSSAPACYA 146 (337)
T ss_dssp CSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC---------------------EEEEEEECSSSCEEE
T ss_pred eeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCC-------------------CcceeeecccCCCceEE
Confidence 34434455899999999999998 78889999999999999872 12245677889999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++|+|++. +|++++.||.|++||+.++.. ...+..|...|.+++|+|++. .|++++.||.|++||+++.+ .+.
T Consensus 147 ~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~----~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~-~~~ 219 (337)
T 1gxr_A 147 LAISPDSK-VCFSCCSDGNIAVWDLHNQTL----VRQFQGHTDGASCIDISNDGT-KLWTGGLDNTVRSWDLREGR-QLQ 219 (337)
T ss_dssp EEECTTSS-EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE-EEE
T ss_pred EEECCCCC-EEEEEeCCCcEEEEeCCCCce----eeeeecccCceEEEEECCCCC-EEEEEecCCcEEEEECCCCc-eEe
Confidence 99999987 999999999999999987543 234667999999999999998 99999999999999999875 444
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
. ..+...+.+++|+|++ .+|++++.+|.|++||++... ...+..|..+|++++|+|++ .+|++++.||.|++
T Consensus 220 ~-~~~~~~v~~~~~s~~~-~~l~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~ 291 (337)
T 1gxr_A 220 Q-HDFTSQIFSLGYCPTG-EWLAVGMESSNVEVLHVNKPD-----KYQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNA 291 (337)
T ss_dssp E-EECSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSSC-----EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEE
T ss_pred e-ecCCCceEEEEECCCC-CEEEEEcCCCcEEEEECCCCC-----eEEEcCCccceeEEEECCCC-CEEEEecCCCcEEE
Confidence 4 3578889999999999 899999999999999999875 45678899999999999965 89999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
||+.... .++...+...|.+++|+|++. +|++++.|| |++|++.
T Consensus 292 ~~~~~~~-------------------------~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 292 WRTPYGA-------------------------SIFQSKESSSVLSCDISVDDK-YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EETTTCC-------------------------EEEEEECSSCEEEEEECTTSC-EEEEEETTSCEEEEEEE
T ss_pred EECCCCe-------------------------EEEEecCCCcEEEEEECCCCC-EEEEecCCCeEEEEEEe
Confidence 9998763 223333346799999999996 666666666 9999874
No 43
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=6.9e-33 Score=288.52 Aligned_cols=239 Identities=21% Similarity=0.339 Sum_probs=203.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|...|++++|+|++ .+|++++.+|.|++|+.. .+.+..+.+|...|.+++|+
T Consensus 338 ~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~----------------------~~~~~~~~~~~~~v~~~~~s 394 (577)
T 2ymu_A 338 QTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRN----------------------GQLLQTLTGHSSSVRGVAFS 394 (577)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETT----------------------CCEEEEEECCSSCEEEEEEC
T ss_pred EEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCC----------------------CCEEEEecCCCCCeEEEEEC
Confidence 3567899999999999999 788999999999999964 35677888999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|++. +|++|+.|+.|++|+... .. ...+.+|...|++++|+|++. +|++++.|++|++||... ..+..+.+
T Consensus 395 ~dg~-~l~~~~~d~~v~~~~~~~-~~----~~~~~~~~~~v~~~~~s~d~~-~l~~~~~d~~v~~w~~~~--~~~~~~~~ 465 (577)
T 2ymu_A 395 PDGQ-TIASASDDKTVKLWNRNG-QL----LQTLTGHSSSVWGVAFSPDDQ-TIASASDDKTVKLWNRNG--QLLQTLTG 465 (577)
T ss_dssp TTSS-CEEEEETTSEEEEECTTC-CE----EEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTS--CEEEEEEC
T ss_pred CCCC-EEEEEeCCCEEEEEeCCC-CE----EEEecCCCCCeEEEEECCCCC-EEEEEcCCCEEEEEECCC--CEEEEEcC
Confidence 9998 999999999999999643 22 245778999999999999998 999999999999999754 36778899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...|++++|+|++ .+|++++.|+.|++||. +++ ++..+.+|...|++++|+|++ .+|++++.|+.|+|||+.
T Consensus 466 ~~~~v~~~~~spd~-~~las~~~d~~i~iw~~-~~~----~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 466 HSSSVRGVAFSPDG-QTIASASDDKTVKLWNR-NGQ----LLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN 538 (577)
T ss_dssp CSSCEEEEEECTTS-CEEEEEETTSEEEEEET-TSC----EEEEEECCSSCEEEEEECTTS-SCEEEEETTSEEEEECTT
T ss_pred CCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcC-CCC----EEEEEeCCCCCEEEEEEcCCC-CEEEEEECcCEEEEEeCC
Confidence 99999999999999 89999999999999995 344 788999999999999999965 899999999999999964
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEe
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
... ...+..|. ..|++++|+|++. +|+|++.|+ |++|+
T Consensus 539 ~~~-----------------------~~~~~~h~--~~v~~~~fs~dg~-~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 539 GQL-----------------------LQTLTGHS--SSVWGVAFSPDGQ-TIASASSDKTVKLWN 577 (577)
T ss_dssp SCE-----------------------EEEEECCS--SCEEEEEECTTSS-CEEEEETTSCEEEEC
T ss_pred CCE-----------------------EEEEcCCC--CCEEEEEEcCCCC-EEEEEeCCCEEEEeC
Confidence 220 12233332 5799999999996 566777777 99995
No 44
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.8e-33 Score=273.78 Aligned_cols=255 Identities=14% Similarity=0.256 Sum_probs=207.4
Q ss_pred EEEEecCCcceeEEEEecC---CC---cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCC-----cEEec
Q 039302 162 QLRKVAHQGCVNRIRAMSQ---NP---HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSP-----LVKFG 230 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~---~~---~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 230 (479)
...+.+|...|++++|+|+ +. .+|++++.||.|++|++.. ... +..+.
T Consensus 55 ~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~---------------------~~~~~~~~~~~~~ 113 (397)
T 1sq9_A 55 SYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITR---------------------EDETKKVIFEKLD 113 (397)
T ss_dssp EEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEE---------------------CTTTCCEEEEEEC
T ss_pred ceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccC---------------------Ccccccccceeec
Confidence 4567799999999999998 23 5788899999999999986 333 67788
Q ss_pred CC-----CCceEEEEeC----CCCCCe-EEEEeCCCeEEEEecCC------CCccccCC-CCc-------ccCCCcEEEE
Q 039302 231 GH-----KDEGYAIDWN----PVAPGR-LVSGDCNSCIHLWEPAS------DATWNVDP-NPF-------IGHAASVEDL 286 (479)
Q Consensus 231 ~h-----~~~v~~l~~s----~~~~~~-l~sg~~dg~I~lwd~~~------~~~~~~~~-~~~-------~~h~~~V~~l 286 (479)
.| ...|.+++|+ |++. + |++|+.||.|++||+.+ ........ ..+ ..|...|.++
T Consensus 114 ~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 192 (397)
T 1sq9_A 114 LLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV 192 (397)
T ss_dssp CSCTTGGGSCEEEEEEECCC----C-EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE
T ss_pred ccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEE
Confidence 88 5899999999 9887 8 99999999999999987 33311000 034 4488899999
Q ss_pred EECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec---C---CCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCC
Q 039302 287 QWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA---H---NADVNVISWNRLASCLLASGSDD---GTFSIHDLRLL 357 (479)
Q Consensus 287 ~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~---h---~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~ 357 (479)
+|+|++ +|++++.||.|++||+++.+ ++..+.. | ...|.+++|+|++ .+|++|+.| |.|++||+++.
T Consensus 193 ~~~~~~--~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~ 268 (397)
T 1sq9_A 193 DISERG--LIATGFNNGTVQISELSTLR-PLYNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFG 268 (397)
T ss_dssp EECTTS--EEEEECTTSEEEEEETTTTE-EEEEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTC
T ss_pred EECCCc--eEEEEeCCCcEEEEECCCCc-eeEEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCC
Confidence 999998 89999999999999999875 7777888 8 9999999999998 899999999 99999999988
Q ss_pred CCCCceEEEeec-------------CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCC
Q 039302 358 KGGDSVVAHFEY-------------HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAP 424 (479)
Q Consensus 358 ~~~~~~~~~~~~-------------h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 424 (479)
+ ++..+.. |...|++++|+|++ .+|++++.|+.|+|||+......
T Consensus 269 ~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~----------------- 326 (397)
T 1sq9_A 269 E----RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTKERI----------------- 326 (397)
T ss_dssp C----EEEEECBC--------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTTEEE-----------------
T ss_pred c----ccceeccCcccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCCcee-----------------
Confidence 7 7888988 99999999999965 89999999999999999876311
Q ss_pred CCCCCceEE------ee------------c-CCCCeeeEEEeCCCC---------cEEEEEcCCC-ceEEeeec
Q 039302 425 EDLPPQLLF------IH------------Q-GQKDLKELHWHTQVP---------GMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 425 ~~~p~~l~~------~h------------~-g~~~V~~v~w~p~~~---------~ll~s~~~dg-i~iw~~~~ 469 (479)
..+. .| . +...|++++|+|++. .+|++++.|| |++|++.+
T Consensus 327 -----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 327 -----TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp -----EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred -----EEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 1111 11 0 035799999999973 4888888888 99999865
No 45
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.7e-33 Score=275.15 Aligned_cols=248 Identities=23% Similarity=0.326 Sum_probs=207.4
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
....|.+.|++++|+|++ .+|++|+.||.|+|||+.. .+.+..+.+|...|.+++|+
T Consensus 129 ~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~---------------------~~~~~~~~~~~~~v~~~~~~- 185 (401)
T 4aez_A 129 AETDESTYVASVKWSHDG-SFLSVGLGNGLVDIYDVES---------------------QTKLRTMAGHQARVGCLSWN- 185 (401)
T ss_dssp EECCTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEEEE-
T ss_pred eecCCCCCEEEEEECCCC-CEEEEECCCCeEEEEECcC---------------------CeEEEEecCCCCceEEEEEC-
Confidence 344589999999999988 7889999999999999987 57778899999999999994
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
+. .|++|+.||.|++||+...... ...+.+|...|.+++|+|++. +|++|+.||.|++||+++.. ++..+..|
T Consensus 186 -~~-~l~~~~~dg~i~i~d~~~~~~~---~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~-~~~~~~~~ 258 (401)
T 4aez_A 186 -RH-VLSSGSRSGAIHHHDVRIANHQ---IGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSI-PKFTKTNH 258 (401)
T ss_dssp -TT-EEEEEETTSEEEEEETTSSSCE---EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSS-EEEEECCC
T ss_pred -CC-EEEEEcCCCCEEEEecccCcce---eeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCC-ccEEecCC
Confidence 34 9999999999999999854332 245778999999999999888 99999999999999999875 67778889
Q ss_pred CCCEEEEEEcCCCCcEEEEEe--CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE--eCCCcEEEE
Q 039302 324 NADVNVISWNRLASCLLASGS--DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS--SADNQLTIW 399 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs--~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~--s~Dg~I~iw 399 (479)
...|.+++|+|++..++++|+ .|+.|++||+++.. ++..+. |...|++++|+|++ .+|+++ +.||.|++|
T Consensus 259 ~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~----~~~~~~-~~~~v~~~~~s~~~-~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 259 NAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA----RVNTVD-AGSQVTSLIWSPHS-KEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp SSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC----EEEEEE-CSSCEEEEEECSSS-SEEEEEECTTTCEEEEE
T ss_pred cceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC----EEEEEe-CCCcEEEEEECCCC-CeEEEEeecCCCcEEEE
Confidence 999999999998878999876 89999999999887 677775 67889999999966 777774 489999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++...... .......+...|.+++|+|++. +|++++.|| |++|++.+.
T Consensus 333 ~~~~~~~~----------------------~~~~~~~h~~~v~~~~~s~dg~-~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 333 SYSSSGLT----------------------KQVDIPAHDTRVLYSALSPDGR-ILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEETTEEE----------------------EEEEEECCSSCCCEEEECTTSS-EEEEECTTSEEEEEECCC-
T ss_pred ecCCccce----------------------eEEEecCCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCC
Confidence 99875310 1222223335799999999986 778888888 999998765
No 46
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.3e-33 Score=276.71 Aligned_cols=256 Identities=16% Similarity=0.237 Sum_probs=197.0
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-------------
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG------------- 230 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 230 (479)
...+|.+.|++++|+|++ .+||+|+ ++.++||++... ..+..+.
T Consensus 59 ~~~~h~~~V~~v~fspdg-~~la~g~-~~~v~i~~~~~g---------------------~~~~~l~~~~~~~~~~~~~~ 115 (393)
T 1erj_A 59 KSLDHTSVVCCVKFSNDG-EYLATGC-NKTTQVYRVSDG---------------------SLVARLSDDSAANKDPENLN 115 (393)
T ss_dssp EEEECSSCCCEEEECTTS-SEEEEEC-BSCEEEEETTTC---------------------CEEEEECC------------
T ss_pred EecCCCCEEEEEEECCCC-CEEEEEc-CCcEEEEEecCC---------------------CEEEEecCcccccccccccc
Confidence 445799999999999999 6888866 689999999762 2222222
Q ss_pred -----CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcE
Q 039302 231 -----GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNI 305 (479)
Q Consensus 231 -----~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I 305 (479)
.+...|.+++|+|++. +|++|+.||.|+|||+.++.. ...+.+|...|.+++|+|++. .|++|+.|++|
T Consensus 116 ~~~~~~~~~~v~~v~~s~dg~-~l~s~~~d~~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v 189 (393)
T 1erj_A 116 TSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRKI----VMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTV 189 (393)
T ss_dssp -----CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEECTTSS-EEEEEETTSEE
T ss_pred ccccCCCceeEEEEEECCCCC-EEEEEcCCCeEEEEECCCCcE----EEEEccCCCCEEEEEEcCCCC-EEEEecCCCcE
Confidence 2333599999999998 999999999999999987543 244778999999999999998 99999999999
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-------ecCCCCeEEEE
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-------EYHKHPVTSIE 378 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-------~~h~~~I~~v~ 378 (479)
++||+++++ +...+. +...+.+++|+|..+.+|++|+.||.|++||+++.. .+..+ .+|...|++++
T Consensus 190 ~iwd~~~~~-~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~----~~~~~~~~~~~~~~h~~~v~~v~ 263 (393)
T 1erj_A 190 RIWDLRTGQ-CSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF----LVERLDSENESGTGHKDSVYSVV 263 (393)
T ss_dssp EEEETTTTE-EEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCC----EEEEEC------CCCSSCEEEEE
T ss_pred EEEECCCCe-eEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCc----EEEeecccccCCCCCCCCEEEEE
Confidence 999999875 444444 567899999999444999999999999999999876 56555 57999999999
Q ss_pred EeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEE
Q 039302 379 WSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 379 ~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~ 457 (479)
|+|++ .+|++|+.|+.|++||++......... ............+| ..|.+++|+|++. +|+++
T Consensus 264 ~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~-------------~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~sg 328 (393)
T 1erj_A 264 FTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSK-------------TPNSGTCEVTYIGHKDFVLSVATTQNDE-YILSG 328 (393)
T ss_dssp ECTTS-SEEEEEETTSEEEEEEC----------------------------CEEEEEECCSSCEEEEEECGGGC-EEEEE
T ss_pred ECCCC-CEEEEEeCCCEEEEEECCCCCCccccc-------------CCCCCcceEEEecccCcEEEEEECCCCC-EEEEE
Confidence 99965 999999999999999998753211000 00001122222233 4699999999986 77888
Q ss_pred cCCC-ceEEeeec
Q 039302 458 AADG-FNILMPSN 469 (479)
Q Consensus 458 ~~dg-i~iw~~~~ 469 (479)
+.|+ |++|++.+
T Consensus 329 s~D~~v~iwd~~~ 341 (393)
T 1erj_A 329 SKDRGVLFWDKKS 341 (393)
T ss_dssp ETTSEEEEEETTT
T ss_pred eCCCeEEEEECCC
Confidence 8888 99998754
No 47
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.5e-33 Score=275.46 Aligned_cols=255 Identities=14% Similarity=0.242 Sum_probs=205.4
Q ss_pred cCCcceeEEEEecCCC---cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 167 AHQGCVNRIRAMSQNP---HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~---~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.|.+.|++++|+|++. .+|++|+.||.|+|||+.. .+.+..+.+|...|.+++|+|
T Consensus 67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~---------------------~~~~~~~~~~~~~i~~~~~~~ 125 (366)
T 3k26_A 67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT---------------------MQCIKHYVGHGNAINELKFHP 125 (366)
T ss_dssp CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTT---------------------CCEEEEEESCCSCEEEEEECS
T ss_pred CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchh---------------------ceEeeeecCCCCcEEEEEECC
Confidence 4889999999999842 6899999999999999987 577888999999999999999
Q ss_pred -CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee----
Q 039302 244 -VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM---- 318 (479)
Q Consensus 244 -~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~---- 318 (479)
++. +|++|+.||.|++||+.++..... ...+.+|...|.+++|+|++. +|++++.||.|++||+++.+ ...
T Consensus 126 ~~~~-~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~-~~~~~~~ 201 (366)
T 3k26_A 126 RDPN-LLLSVSKDHALRLWNIQTDTLVAI-FGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKR-MMNAIKE 201 (366)
T ss_dssp SCTT-EEEEEETTSCEEEEETTTTEEEEE-ECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHH-HHHHHHH
T ss_pred CCCC-EEEEEeCCCeEEEEEeecCeEEEE-ecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCc-cccccce
Confidence 665 999999999999999987543221 122368999999999999988 99999999999999999763 221
Q ss_pred ------------------------EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------CceE
Q 039302 319 ------------------------SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----------DSVV 364 (479)
Q Consensus 319 ------------------------~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----------~~~~ 364 (479)
....|...|.+++|+ + .+|++++.||.|++||+++.... ...+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~ 278 (366)
T 3k26_A 202 SYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--G-DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTIL 278 (366)
T ss_dssp HHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--T-TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEE
T ss_pred eEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--C-CEEEEEecCCEEEEEeCCCccccccccccCCcchhee
Confidence 223389999999999 4 79999999999999999876520 1247
Q ss_pred EEeecCCCCeEEEEEeCCC-CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeee
Q 039302 365 AHFEYHKHPVTSIEWSPHE-GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKE 443 (479)
Q Consensus 365 ~~~~~h~~~I~~v~~sp~~-~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~ 443 (479)
..+..|...|++++|+|+. +.+|++|+.||.|++||+...... ......+..|.+...|++
T Consensus 279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------~~~~~~~~~~~~~~~v~~ 340 (366)
T 3k26_A 279 GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH------------------KAKCTTLTHHKCGAAIRQ 340 (366)
T ss_dssp EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG------------------GCEEEEECCTTCCSCEEE
T ss_pred ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc------------------cccceEEcccccCCceEE
Confidence 8888999999999999961 599999999999999999876421 000012222322367999
Q ss_pred EEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 444 LHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 444 v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
++|+|++. +|++++.|| |++|++.
T Consensus 341 ~~~s~~~~-~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 341 TSFSRDSS-ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEECTTSS-EEEEEETTSEEEEEEC-
T ss_pred EEeCCCCC-eEEEEeCCCEEEEEEec
Confidence 99999986 777788887 9999874
No 48
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=2.3e-33 Score=271.30 Aligned_cols=285 Identities=19% Similarity=0.269 Sum_probs=212.4
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|++++|+|++ .+||+|+.||.|+|||+..... ....+..+.+|...|.+++|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~-~~l~~~~~dg~i~iw~~~~~~~-----------------~~~~~~~~~~~~~~v~~~~~ 65 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYG-RHVATCSSDQHIKVFKLDKDTS-----------------NWELSDSWRAHDSSIVAIDW 65 (351)
T ss_dssp CCEECCCSSCEEEEEECSSS-SEEEEEETTSEEEEEEECSSSC-----------------CEEEEEEEECCSSCEEEEEE
T ss_pred cccCcccccceeEEEEcCCC-CEEEEeeCCCeEEEEECCCCCC-----------------cceecceeccCCCcEEEEEE
Confidence 34567999999999999998 7889999999999999986211 11356678899999999999
Q ss_pred CCC--CCCeEEEEeCCCeEEEEecCCCCccc-----cCCCCcccCCCcEEEEEECCC--CCcEEEEEeCCCcEEEEEcCC
Q 039302 242 NPV--APGRLVSGDCNSCIHLWEPASDATWN-----VDPNPFIGHAASVEDLQWSPT--ESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 242 s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~-----~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~dg~I~iwD~~~ 312 (479)
+|. +. +|++|+.||.|++||+.++.... .....+.+|...|.+++|+|+ +. +|++++.||.|++||+++
T Consensus 66 ~~~~d~~-~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~ 143 (351)
T 3f3f_A 66 ASPEYGR-IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALE 143 (351)
T ss_dssp CCGGGCS-EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSS
T ss_pred cCCCCCC-EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCC
Confidence 994 66 99999999999999998753211 112346689999999999999 77 999999999999999998
Q ss_pred CCceeeEE-------------ecCCCCEEEEEEcCC--CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEE
Q 039302 313 GKSALMSF-------------KAHNADVNVISWNRL--ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI 377 (479)
Q Consensus 313 ~~~~~~~~-------------~~h~~~v~~l~~~p~--~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v 377 (479)
.+. +..+ ..|...+.+++|+|+ .+.+|++++.++.+.+|+..... ...+..+.+|..+|+++
T Consensus 144 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~i~~~ 220 (351)
T 3f3f_A 144 PSD-LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK--LHVAAKLPGHKSLIRSI 220 (351)
T ss_dssp TTC-TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC--EEEEEECCCCCSCEEEE
T ss_pred hHH-hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc--eeeeeecCCCCcceeEE
Confidence 752 2211 267889999999997 23899999999999888877665 22477888999999999
Q ss_pred EEeCCCC---CEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcc---------------------cccCCCCCCCCceEE
Q 039302 378 EWSPHEG---STLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTR---------------------EQVNAPEDLPPQLLF 433 (479)
Q Consensus 378 ~~sp~~~---~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~p~~l~~ 433 (479)
+|+|+++ .+|++|+.||.|++||++................ .............+.
T Consensus 221 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (351)
T 3f3f_A 221 SWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLS 300 (351)
T ss_dssp EECCCSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEE
T ss_pred EECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEE
Confidence 9999653 7999999999999999987532211100000000 000000011124445
Q ss_pred eecCCC-CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 434 IHQGQK-DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 434 ~h~g~~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
...+|. .|++++|+|++. +|++++.|| |+||++...
T Consensus 301 ~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 301 EHDDHNGEVWSVSWNLTGT-ILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp EECTTSSCEEEEEECSSSC-CEEEEETTSCEEEEEECTT
T ss_pred EEecccccEEEEEEcCCCC-EEEEecCCCcEEEEecCcC
Confidence 555554 699999999986 777777777 999998753
No 49
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.4e-32 Score=274.70 Aligned_cols=262 Identities=13% Similarity=0.188 Sum_probs=203.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++|+.||.|++||+.. .+.+..+.+|...|.+++|+
T Consensus 133 ~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 133 EIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKD---------------------GSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp EETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCCCEEEECCSSCEEEEEEE
T ss_pred eecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCC---------------------CcCceEEcCCCCcEEEEEEc
Confidence 3446899999999999998 6889999999999999987 56778899999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCC---------------------CcEEEEEECCCCCcEEEEEeC
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHA---------------------ASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~---------------------~~V~~l~~sp~~~~~l~s~s~ 301 (479)
|++. +|++|+.||.|++||+.++..... ......|. ..+.+++|+|++. +|++|+.
T Consensus 191 ~~~~-~l~s~~~d~~v~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~ 267 (420)
T 3vl1_A 191 DRGR-NVLSASLDGTIRLWECGTGTTIHT-FNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGK-YVIAGHV 267 (420)
T ss_dssp TTTT-EEEEEETTSCEEEEETTTTEEEEE-ECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTE-EEEEEET
T ss_pred CCCC-EEEEEcCCCcEEEeECCCCceeEE-eecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCC-EEEEEcC
Confidence 9997 999999999999999987543221 11112233 4444555678887 9999999
Q ss_pred CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEe
Q 039302 302 DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWS 380 (479)
Q Consensus 302 dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~s 380 (479)
||.|++||++++.........|...|++++|+|++..+|++|+.||.|++||+++... ++..+.. |..+|+++.|.
T Consensus 268 dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~~~v~~~~~~ 344 (420)
T 3vl1_A 268 SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC---PVGEFLINEGTPINNVYFA 344 (420)
T ss_dssp TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS---CSEEEEESTTSCEEEEEEE
T ss_pred CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC---chhhhhccCCCCceEEEeC
Confidence 9999999999986444444568899999999999944999999999999999998764 5777776 77788888665
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCC---cEEEEE
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVP---GMIVST 457 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~---~ll~s~ 457 (479)
+ + .+|++++.|+.|++|++....... ...... ...........|.+++|+|++. .+++++
T Consensus 345 ~-~-~~l~s~~~d~~v~iw~~~~~~~~~--------------~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g 407 (420)
T 3vl1_A 345 A-G-ALFVSSGFDTSIKLDIISDPESER--------------PAIEFE-TPTFLVSNDDAVSQFCYVSDDESNGEVLEVG 407 (420)
T ss_dssp T-T-EEEEEETTTEEEEEEEECCTTCCS--------------CEECTT-SCEEECCSSCCCCEEEEECCSSSSCEEEEEE
T ss_pred C-C-CEEEEecCCccEEEEeccCCCCCc--------------cceecc-CccEEccCCcceEEEEEccCCCCcceEEEEc
Confidence 3 4 799999999999999998753210 000011 1112223335799999999987 577777
Q ss_pred cCCCceEEeeec
Q 039302 458 AADGFNILMPSN 469 (479)
Q Consensus 458 ~~dgi~iw~~~~ 469 (479)
+.+.+.+|++.+
T Consensus 408 ~~g~~~~~~~~~ 419 (420)
T 3vl1_A 408 KNNFCALYNLSN 419 (420)
T ss_dssp TTTEEEEEESCC
T ss_pred CCceEEEEeccC
Confidence 666588898753
No 50
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.8e-33 Score=283.27 Aligned_cols=250 Identities=15% Similarity=0.186 Sum_probs=193.6
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec---CCCCceEE
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG---GHKDEGYA 238 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~ 238 (479)
...+.+|.+.|++|+|+|.+..+|+||+.||+|+|||+... ....+. .+...+.+
T Consensus 157 ~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~----------------------~~~~~~~~~~~~~~~~~ 214 (435)
T 4e54_B 157 FIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN----------------------ILRVFASSDTINIWFCS 214 (435)
T ss_dssp EECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC----------------------EEEEEECCSSCSCCCCC
T ss_pred EEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC----------------------ceeEEeccCCCCccEEE
Confidence 34677999999999999976689999999999999999762 112222 23346789
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--e
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--A 316 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~ 316 (479)
++|+|++. +|++|+.||.|++||+... . ...+.+|...|++++|+|++..+|++|+.|++|+|||++.... .
T Consensus 215 ~~~~~~~~-~l~~g~~dg~i~~wd~~~~-~----~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~ 288 (435)
T 4e54_B 215 LDVSASSR-MVVTGDNVGNVILLNMDGK-E----LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS 288 (435)
T ss_dssp EEEETTTT-EEEEECSSSBEEEEESSSC-B----CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC
T ss_pred EEECCCCC-EEEEEeCCCcEeeeccCcc-e----eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce
Confidence 99999998 9999999999999998653 2 3567899999999999999988999999999999999998653 2
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC------CeEEEEEeCCCCCEEEEE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH------PVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~------~I~~v~~sp~~~~~las~ 390 (479)
.....+|...|++++|+|++ .+|++|+.||.|+|||++++. ....+..|.. .+..+.|+|.+ .+++++
T Consensus 289 ~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 362 (435)
T 4e54_B 289 FLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSASQWD----CPLGLIPHPHRHFQHLTPIKAAWHPRY-NLIVVG 362 (435)
T ss_dssp CSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESSSSS----SEEEECCCCCCCCSSSCCCBCEECSSS-SCEEEE
T ss_pred EEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECCCCc----cceEEecccccccccceeEEEEEcCCC-CEEEEE
Confidence 33346799999999999999 899999999999999999887 5666655543 23456788855 555555
Q ss_pred e------------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeE-EEeCCCCcEEEE
Q 039302 391 S------------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKEL-HWHTQVPGMIVS 456 (479)
Q Consensus 391 s------------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v-~w~p~~~~ll~s 456 (479)
+ .++.|++||+..+. .+.....+| ..|.++ +|||++. +|++
T Consensus 363 ~~~d~~~~~~~~~~~~~i~iwd~~~g~------------------------~~~~l~~~~~~~v~s~~~fspdg~-~las 417 (435)
T 4e54_B 363 RYPDPNFKSCTPYELRTIDVFDGNSGK------------------------MMCQLYDPESSGISSLNEFNPMGD-TLAS 417 (435)
T ss_dssp CCCCTTSCCSSTTCCCCEEEECSSSCC------------------------EEEEECCSSCCCCCCEEEECTTSS-CEEE
T ss_pred EcCCCCeEEEEecCCCEEEEEECCCCc------------------------EEEEEeCCCCCcEEEEEEECCCCC-EEEE
Confidence 3 34579999998763 222222333 368887 6999986 7778
Q ss_pred EcCCCceEEeeecc
Q 039302 457 TAADGFNILMPSNI 470 (479)
Q Consensus 457 ~~~dgi~iw~~~~~ 470 (479)
++++.|+||++.+.
T Consensus 418 g~d~~i~iW~~~~g 431 (435)
T 4e54_B 418 AMGYHILIWSQQEA 431 (435)
T ss_dssp ECSSEEEECCCC--
T ss_pred EcCCcEEEEECCcC
Confidence 87666999988654
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.7e-32 Score=263.18 Aligned_cols=260 Identities=19% Similarity=0.284 Sum_probs=207.2
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.....+.+|.+.|++++|+|++ .+|++++.||.|++|+... .........+...+..+
T Consensus 77 ~~~~~l~~h~~~V~~~~~s~dg-~~l~s~~~d~~i~~~~~~~---------------------~~~~~~~~~~~~~~~~~ 134 (340)
T 4aow_A 77 IPQRALRGHSHFVSDVVISSDG-QFALSGSWDGTLRLWDLTT---------------------GTTTRRFVGHTKDVLSV 134 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEE
T ss_pred eeeEEEeCCCCCEEEEEECCCC-CEEEEEcccccceEEeecc---------------------cceeeeecCCCCceeEE
Confidence 3445678999999999999999 7889999999999999987 44555666788899999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC-cEEEEEeCCCcEEEEEcCCCCceee
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES-DVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~-~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
.+++.+. +|++|+.|+.+++||+....... ....+|...|.+++|++++. .++++++.|+.|++||+++.+ .+.
T Consensus 135 ~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~-~~~ 209 (340)
T 4aow_A 135 AFSSDNR-QIVSGSRDKTIKLWNTLGVCKYT---VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK-LKT 209 (340)
T ss_dssp EECTTSS-CEEEEETTSCEEEECTTSCEEEE---ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-EEE
T ss_pred EEeecCc-cceeecCCCeEEEEEeCCCceEE---EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-eee
Confidence 9999998 99999999999999987643322 34668999999999998764 378899999999999999875 777
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+.+|...|++++|+|++ .+|++|+.||.|++||+++.. ++..+.. ...|+++.|+|++ .+++++.|+.|++
T Consensus 210 ~~~~h~~~v~~~~~s~~~-~~l~s~s~Dg~i~iwd~~~~~----~~~~~~~-~~~v~~~~~~~~~--~~~~~~~d~~i~i 281 (340)
T 4aow_A 210 NHIGHTGYLNTVTVSPDG-SLCASGGKDGQAMLWDLNEGK----HLYTLDG-GDIINALCFSPNR--YWLCAATGPSIKI 281 (340)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTCEEEEEETTTTE----EEEEEEC-SSCEEEEEECSSS--SEEEEEETTEEEE
T ss_pred EecCCCCcEEEEEECCCC-CEEEEEeCCCeEEEEEeccCc----eeeeecC-CceEEeeecCCCC--ceeeccCCCEEEE
Confidence 889999999999999999 899999999999999999887 6777765 5689999999943 4566777999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
||++....... . ..+........+...|++++|+|++. +|++++.|| |+||++.+.
T Consensus 282 wd~~~~~~~~~-------------~--~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 282 WDLEGKIIVDE-------------L--KQEVISTSSKAEPPQCTSLAWSADGQ-TLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp EETTTTEEEEE-------------E--CCC-------CCCCCEEEEEECTTSS-EEEEEETTSCEEEEEEEC-
T ss_pred EECCCCeEEEe-------------c--cccceeeeccCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEeCCCc
Confidence 99986531100 0 00001111112234799999999986 777888888 999998764
No 52
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-32 Score=262.65 Aligned_cols=252 Identities=14% Similarity=0.207 Sum_probs=209.8
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|++++|+|++ .+|++++.||.|++||+.. .+.+..+. |...+.+++|
T Consensus 67 ~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~~-~~~~v~~~~~ 123 (369)
T 3zwl_B 67 LGTLDGHTGTIWSIDVDCFT-KYCVTGSADYSIKLWDVSN---------------------GQCVATWK-SPVPVKRVEF 123 (369)
T ss_dssp EEEECCCSSCEEEEEECTTS-SEEEEEETTTEEEEEETTT---------------------CCEEEEEE-CSSCEEEEEE
T ss_pred hhhhhhcCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEee-cCCCeEEEEE
Confidence 34677899999999999988 7888999999999999987 56666776 7889999999
Q ss_pred CCCCCCeEEEEeCC-----CeEEEEecCCCCcccc-------CCCCcccCCC--cEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 242 NPVAPGRLVSGDCN-----SCIHLWEPASDATWNV-------DPNPFIGHAA--SVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 242 s~~~~~~l~sg~~d-----g~I~lwd~~~~~~~~~-------~~~~~~~h~~--~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
+|++. +|++++.+ |.|++|++........ ....+..|.. .+.+++|+|++. +|++++.||.|++
T Consensus 124 ~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i 201 (369)
T 3zwl_B 124 SPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISK 201 (369)
T ss_dssp CTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEE
T ss_pred ccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEE
Confidence 99998 99999998 9999999976543110 1122345555 899999999998 9999999999999
Q ss_pred EEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 308 WDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 308 wD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
||+++....+..+..|...|.+++|+|++ .+|++++.||.|++||+++.. .+..+. +..++.+++|+|++ .++
T Consensus 202 ~d~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~v~d~~~~~----~~~~~~-~~~~~~~~~~~~~~-~~l 274 (369)
T 3zwl_B 202 YDVSNNYEYVDSIDLHEKSISDMQFSPDL-TYFITSSRDTNSFLVDVSTLQ----VLKKYE-TDCPLNTAVITPLK-EFI 274 (369)
T ss_dssp EETTTTTEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCC----EEEEEE-CSSCEEEEEECSSS-SEE
T ss_pred EECCCCcEeEEEEecCCCceeEEEECCCC-CEEEEecCCceEEEEECCCCc----eeeeec-CCCCceeEEecCCC-ceE
Confidence 99998555778888999999999999998 899999999999999999887 677776 78899999999965 889
Q ss_pred EEEeCCC--------------cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE
Q 039302 388 AVSSADN--------------QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 388 as~s~Dg--------------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l 453 (479)
++++.++ .|++||+.... .+.....+...|++++|+|++. +
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~------------------------~~~~~~~~~~~v~~~~~s~~~~-~ 329 (369)
T 3zwl_B 275 ILGGGQEAKDVTTTSANEGKFEARFYHKIFEE------------------------EIGRVQGHFGPLNTVAISPQGT-S 329 (369)
T ss_dssp EEEECCC-------------CEEEEEETTTCC------------------------EEEEEECCSSCEEEEEECTTSS-E
T ss_pred EEeecCCCceEEEEecCCCcceeEEEecCCCc------------------------chhheecccCcEEEEEECCCCC-E
Confidence 9998888 89999988763 1222222235799999999985 7
Q ss_pred EEEEcCCC-ceEEeeecc
Q 039302 454 IVSTAADG-FNILMPSNI 470 (479)
Q Consensus 454 l~s~~~dg-i~iw~~~~~ 470 (479)
|++++.|| |++|++..-
T Consensus 330 l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 330 YASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EEEEETTSEEEEEEECHH
T ss_pred EEEEcCCCeEEEEECccc
Confidence 88888887 999998653
No 53
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-32 Score=270.15 Aligned_cols=263 Identities=19% Similarity=0.267 Sum_probs=207.1
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
+|.+.|++++|+|++ .+|++++.+|.|+|||.. ...+..+.+|...|.+++|+|++.
T Consensus 106 ~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~~~~----------------------~~~~~~~~~~~~~v~~~~~~~~~~ 162 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDG-NSIVTGVENGELRLWNKT----------------------GALLNVLNFHRAPIVSVKWNKDGT 162 (425)
T ss_dssp --CBCEEEEEECTTS-SEEEEEETTSCEEEEETT----------------------SCEEEEECCCCSCEEEEEECTTSS
T ss_pred CCCCceEEEEEcCCC-CEEEEEeCCCeEEEEeCC----------------------CCeeeeccCCCccEEEEEECCCCC
Confidence 378899999999988 788899999999999932 466788889999999999999998
Q ss_pred CeEEEEeCCCeEEEEecCCCCcccc----------------------------------------------------CCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNV----------------------------------------------------DPN 274 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~----------------------------------------------------~~~ 274 (479)
+|++++.||.|++||+.++..... ...
T Consensus 163 -~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~ 241 (425)
T 1r5m_A 163 -HIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTG 241 (425)
T ss_dssp -EEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSE
T ss_pred -EEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceee
Confidence 999999999999999976432100 011
Q ss_pred CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 275 PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 275 ~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.+..|...|.+++|+|++. +|++++.||.|++||+++.+ .+..+..|...|.+++|+|++ +|++++.||.|++||+
T Consensus 242 ~~~~~~~~i~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~ 317 (425)
T 1r5m_A 242 KLIGHHGPISVLEFNDTNK-LLLSASDDGTLRIWHGGNGN-SQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSL 317 (425)
T ss_dssp EECCCSSCEEEEEEETTTT-EEEEEETTSCEEEECSSSBS-CSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEET
T ss_pred eeccCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCc-cceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEEC
Confidence 2446889999999999998 99999999999999999875 677788899999999999987 8999999999999999
Q ss_pred CCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe
Q 039302 355 RLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI 434 (479)
Q Consensus 355 r~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 434 (479)
++.. .+..+..|..+|++++|+|++ .+|++++.||.|++||+.......... ... ........+..++..
T Consensus 318 ~~~~----~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~ 387 (425)
T 1r5m_A 318 KQNT----LLALSIVDGVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSL--YGN---RDGILNPLPIPLYAS 387 (425)
T ss_dssp TTTE----EEEEEECTTCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC-------------------CEECCEEEE
T ss_pred CCCc----EeEecccCCccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeee--ecc---cccccCcccchhhhh
Confidence 9887 788999999999999999965 999999999999999997653110000 000 000000111223344
Q ss_pred ecCC--C-CeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 435 HQGQ--K-DLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 435 h~g~--~-~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
..++ . .|++++|+|++. +|++++.|| |++|++.
T Consensus 388 ~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 388 YQSSQDNDYIFDLSWNCAGN-KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECCTTCCCCEEEEEECTTSS-EEEEEESSSCCEEEECC
T ss_pred hcCcccCCceEEEEccCCCc-eEEEEecCceEEEEeec
Confidence 3444 3 899999999997 666666776 9999874
No 54
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.5e-34 Score=279.40 Aligned_cols=214 Identities=12% Similarity=0.196 Sum_probs=169.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++++.||.|+|||+.... ...+...+.+|...|.+++|+
T Consensus 49 ~~~~~h~~~v~~~~~s~~~-~~l~s~s~d~~v~vwd~~~~~------------------~~~~~~~~~~~~~~v~~~~~~ 109 (377)
T 3dwl_C 49 RTFSDHDKIVTCVDWAPKS-NRIVTCSQDRNAYVYEKRPDG------------------TWKQTLVLLRLNRAATFVRWS 109 (377)
T ss_dssp CCBCCCSSCEEEEEECTTT-CCEEEEETTSSEEEC------------------------CCCCEEECCCCSSCEEEEECC
T ss_pred EEEecCCceEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCC------------------ceeeeeEecccCCceEEEEEC
Confidence 3566899999999999998 788899999999999998721 124667788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC-------
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------- 314 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------- 314 (479)
|++. +|++|+.|+.|++||+.+...+.. ...+.+ |...|++++|+|++. +|++++.||+|++||++...
T Consensus 110 ~~~~-~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~ 186 (377)
T 3dwl_C 110 PNED-KFAVGSGARVISVCYFEQENDWWV-SKHLKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKPEA 186 (377)
T ss_dssp TTSS-CCEEEESSSCEEECCC-----CCC-CEEECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CCCS
T ss_pred CCCC-EEEEEecCCeEEEEEECCccccee-eeEeecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCccc
Confidence 9988 999999999999999987653221 234555 999999999999988 99999999999999996321
Q ss_pred ----------ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 315 ----------SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 315 ----------~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
.++..+ .|...|++++|+|++ .+|++|+.||.|++||+++.......+..+.+|..+|++++|+|++
T Consensus 187 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~- 263 (377)
T 3dwl_C 187 SVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES- 263 (377)
T ss_dssp CSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT-
T ss_pred cccccccchhhhhhcc-cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC-
Confidence 234444 899999999999999 8999999999999999998873111277888999999999999965
Q ss_pred CEEEEEeCCCcEEEEECC
Q 039302 385 STLAVSSADNQLTIWDLS 402 (479)
Q Consensus 385 ~~las~s~Dg~I~iwdl~ 402 (479)
.+|++|+.++.+ +|+..
T Consensus 264 ~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 264 AIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp EEEEEESSSSEE-EECCC
T ss_pred CEEEEEcCCcEE-EEEeC
Confidence 888888766555 77765
No 55
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3e-34 Score=282.61 Aligned_cols=256 Identities=19% Similarity=0.236 Sum_probs=198.9
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
...|.+.|++++|+|++ .+||+|+.||.|+|||+.... ...+..+.+|...|++++|+|+
T Consensus 7 ~~~~~~~v~~~~~s~~g-~~l~~~~~d~~i~iw~~~~~~-------------------~~~~~~~~~h~~~v~~~~~s~~ 66 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQR-TEFVTTTATNQVELYEQDGNG-------------------WKHARTFSDHDKIVTCVDWAPK 66 (377)
T ss_dssp EEECSSCCSCCEECSSS-SEEECCCSSSCBCEEEEETTE-------------------EEECCCBCCCSSCEEEEEECTT
T ss_pred EecCCCcEEEEEECCCC-CEEEEecCCCEEEEEEccCCc-------------------eEEEEEEecCCceEEEEEEeCC
Confidence 34577899999999998 788999999999999998610 1455677899999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc--eeeEEec
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS--ALMSFKA 322 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~--~~~~~~~ 322 (479)
+. +|++|+.||.|++||+.++..+. ....+.+|...|.+++|+|++. +|++|+.|+.|++||++.... ....+..
T Consensus 67 ~~-~l~s~s~d~~v~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~ 143 (377)
T 3dwl_C 67 SN-RIVTCSQDRNAYVYEKRPDGTWK-QTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKR 143 (377)
T ss_dssp TC-CEEEEETTSSEEEC------CCC-CEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECS
T ss_pred CC-EEEEEeCCCeEEEEEcCCCCcee-eeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeec
Confidence 97 99999999999999998765111 1234667999999999999988 899999999999999998753 3566666
Q ss_pred -CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC--------------CCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 323 -HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG--------------GDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 323 -h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~--------------~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
|...|++++|+|++ .+|++|+.||.|++||++.... ...++..+ +|...|++++|+|++ .+|
T Consensus 144 ~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~-~~l 220 (377)
T 3dwl_C 144 PLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG-NAL 220 (377)
T ss_dssp SCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS-SCE
T ss_pred ccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC-CEE
Confidence 99999999999998 8999999999999999964321 01255566 899999999999965 899
Q ss_pred EEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 388 AVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
++++.|+.|++||+..... ++.++....+| ..|.+++|+|++. +|++++++++.+|.
T Consensus 221 ~~~~~d~~i~iwd~~~~~~---------------------~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~ 278 (377)
T 3dwl_C 221 AYAGHDSSVTIAYPSAPEQ---------------------PPRALITVKLSQLPLRSLLWANESA-IVAAGYNYSPILLQ 278 (377)
T ss_dssp EEEETTTEEC-CEECSTTS---------------------CEEECCCEECSSSCEEEEEEEETTE-EEEEESSSSEEEEC
T ss_pred EEEeCCCcEEEEECCCCCC---------------------cceeeEeecCCCCceEEEEEcCCCC-EEEEEcCCcEEEEE
Confidence 9999999999999988742 11112222222 4799999999985 88889988877887
Q ss_pred ee
Q 039302 467 PS 468 (479)
Q Consensus 467 ~~ 468 (479)
..
T Consensus 279 ~~ 280 (377)
T 3dwl_C 279 GN 280 (377)
T ss_dssp CC
T ss_pred eC
Confidence 75
No 56
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.7e-33 Score=283.47 Aligned_cols=217 Identities=17% Similarity=0.238 Sum_probs=180.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....+|...|++|+|+|.++.+||+|+.||+|+|||+... .......+.+|.+.|++|+|+
T Consensus 113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~-------------------~~~~~~~~~gH~~~V~~l~f~ 173 (435)
T 4e54_B 113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK-------------------DKPTFIKGIGAGGSITGLKFN 173 (435)
T ss_dssp CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCC-------------------SCCEEECCCSSSCCCCEEEEC
T ss_pred ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC-------------------CceeEEEccCCCCCEEEEEEe
Confidence 3567899999999999987789999999999999999762 123345567899999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|.+..+|+||+.||+|+|||+.+..... ......+...+.+++|+|++. +|++|+.||.|++||++.. .+..+.+
T Consensus 174 p~~~~~l~s~s~D~~v~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~--~~~~~~~ 248 (435)
T 4e54_B 174 PLNTNQFYASSMEGTTRLQDFKGNILRV--FASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK--ELWNLRM 248 (435)
T ss_dssp SSCTTEEEEECSSSCEEEEETTSCEEEE--EECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC--BCCCSBC
T ss_pred CCCCCEEEEEeCCCEEEEeeccCCceeE--EeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc--eeEEEec
Confidence 8644499999999999999997642211 112233455688999999998 9999999999999999864 4667889
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...|++++|+|++..+|++|+.|+.|+|||+++.... ..+....+|..+|++++|+|++ .+|++++.|+.|+|||+.
T Consensus 249 h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~-~~~~~~~~h~~~v~~~~~spdg-~~l~s~~~D~~i~iwd~~ 326 (435)
T 4e54_B 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK-ASFLYSLPHRHPVNAACFSPDG-ARLLTTDQKSEIRVYSAS 326 (435)
T ss_dssp CSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS-SCCSBCCBCSSCEEECCBCTTS-SEEEEEESSSCEEEEESS
T ss_pred ccceEEeeeecCCCceEEEEecCcceeeEEeccccccc-ceEEEeeeccccccceeECCCC-CeeEEEcCCCEEEEEECC
Confidence 99999999999999789999999999999999987631 1233446799999999999965 999999999999999998
Q ss_pred CCC
Q 039302 403 LEK 405 (479)
Q Consensus 403 ~~~ 405 (479)
...
T Consensus 327 ~~~ 329 (435)
T 4e54_B 327 QWD 329 (435)
T ss_dssp SSS
T ss_pred CCc
Confidence 764
No 57
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-31 Score=268.58 Aligned_cols=247 Identities=23% Similarity=0.385 Sum_probs=207.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|...|++|+|+|++ .+||+|+.||.|+|||+.. .+.+..+.+|...+.+++|+
T Consensus 141 ~~~~~~~~~V~sv~fspdg-~~lasgs~Dg~v~iWd~~~---------------------~~~~~~~~~h~~~v~~~s~~ 198 (420)
T 4gga_A 141 LQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ---------------------QKRLRNMTSHSARVGSLSWN 198 (420)
T ss_dssp EECCSTTCCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEEE
T ss_pred EEecCCCCcEEEEEECCCC-CEEEEEECCCeEEEEEcCC---------------------CcEEEEEeCCCCceEEEeeC
Confidence 4556888999999999999 7899999999999999987 67788899999999999986
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeE
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMS 319 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~ 319 (479)
+ . .|++|+.|+.+++|+........ ..+.+|...+..+.|+|++. ++++++.|+.|++||++.+.. .+..
T Consensus 199 ~--~-~l~sgs~d~~i~~~d~~~~~~~~---~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~ 271 (420)
T 4gga_A 199 S--Y-ILSSGSRSGHIHHHDVRVAEHHV---ATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQT 271 (420)
T ss_dssp T--T-EEEEEETTSEEEEEETTSSSCEE---EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred C--C-EEEEEeCCCceeEeeecccceee---EEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeee
Confidence 4 3 99999999999999987654322 45778999999999999998 999999999999999987642 4556
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEE--eCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe--CCCc
Q 039302 320 FKAHNADVNVISWNRLASCLLASG--SDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS--ADNQ 395 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sg--s~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s--~Dg~ 395 (479)
...|...|.+++|+|.+..+++++ +.|++|++||++++. ++..+.. ...+.++.|+|++ ..|++++ .|+.
T Consensus 272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~----~~~~~~~-~~~v~~~~~~~~~-~~lv~~sg~~d~~ 345 (420)
T 4gga_A 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----CLSAVDA-HSQVCSILWSPHY-KELISGHGFAQNQ 345 (420)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE----EEEEEEC-SSCEEEEEEETTT-TEEEEEECTTTCC
T ss_pred ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc----cceeecc-ccceeeeeecCCC-CeEEEEEecCCCE
Confidence 778999999999999988888765 479999999999887 6777765 4578999999977 5555543 6999
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|+|||+.... .+....|| ..|++++|+|++. +|+|++.|+ |+||++...
T Consensus 346 I~iwd~~~~~-------------------------~v~~l~gH~~~V~~l~~spdg~-~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 346 LVIWKYPTMA-------------------------KVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEETTTCC-------------------------EEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCS
T ss_pred EEEEECCCCc-------------------------EEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCC
Confidence 9999998763 23333444 4799999999996 788888888 999998765
No 58
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.3e-32 Score=273.79 Aligned_cols=258 Identities=16% Similarity=0.269 Sum_probs=206.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|.+.|++++|+|.+..+||+|+.||.|+|||+....... ....++..+.+|...|.+++|+|
T Consensus 76 ~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~--------------~~~~~~~~~~~h~~~v~~~~~~p 141 (402)
T 2aq5_A 76 LVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL--------------PLREPVITLEGHTKRVGIVAWHP 141 (402)
T ss_dssp CBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS--------------CBCSCSEEEECCSSCEEEEEECS
T ss_pred eEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc--------------ccCCceEEecCCCCeEEEEEECc
Confidence 3568999999999999444899999999999999998721100 01267888999999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCc--ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE-
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPF--IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF- 320 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~- 320 (479)
++..+|++|+.||.|++||+.++... ..+ .+|...|.+++|+|++. +|++++.||.|++||++++. .+..+
T Consensus 142 ~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~-~~~~~~ 215 (402)
T 2aq5_A 142 TAQNVLLSAGCDNVILVWDVGTGAAV----LTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGT-VVAEKD 215 (402)
T ss_dssp SBTTEEEEEETTSCEEEEETTTTEEE----EEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTE-EEEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCCcc----EEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCc-eeeeec
Confidence 98559999999999999999875432 234 67999999999999988 89999999999999999875 56666
Q ss_pred ecCCCC-EEEEEEcCCCCcEEEEE---eCCCeEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCCCCCEE-EEEeCCC
Q 039302 321 KAHNAD-VNVISWNRLASCLLASG---SDDGTFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPHEGSTL-AVSSADN 394 (479)
Q Consensus 321 ~~h~~~-v~~l~~~p~~~~~l~sg---s~dg~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~~~~~l-as~s~Dg 394 (479)
..|... +.++.|+|++ .+|++| +.|+.|++||+++... ++.... .|...|.+++|+|++ .+| ++|+.|+
T Consensus 216 ~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~iwd~~~~~~---~~~~~~~~~~~~v~~~~~s~~~-~~l~~~g~~dg 290 (402)
T 2aq5_A 216 RPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVALWDTKHLEE---PLSLQELDTSSGVLLPFFDPDT-NIVYLCGKGDS 290 (402)
T ss_dssp CSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEEEEETTBCSS---CSEEEECCCCSSCEEEEEETTT-TEEEEEETTCS
T ss_pred cCCCCCcceEEEEcCCC-cEEEEeccCCCCceEEEEcCccccC---CceEEeccCCCceeEEEEcCCC-CEEEEEEcCCC
Confidence 678765 8999999998 899999 7999999999998763 343333 477889999999976 555 5666899
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
.|++||+..... ....+..|.+...|.+++|+|++. ++++ +.+.+++|++.+
T Consensus 291 ~i~i~d~~~~~~---------------------~~~~l~~~~~~~~v~~~~~sp~~~-~~~s-~~~~~~~~~l~~ 342 (402)
T 2aq5_A 291 SIRYFEITSEAP---------------------FLHYLSMFSSKESQRGMGYMPKRG-LEVN-KCEIARFYKLHE 342 (402)
T ss_dssp CEEEEEECSSTT---------------------CEEEEEEECCSSCCSEEEECCGGG-SCGG-GTEEEEEEEEET
T ss_pred eEEEEEecCCCc---------------------ceEeecccccCCcccceEEecccc-ccee-cceeEEEEEcCC
Confidence 999999987631 123455566556899999999985 4443 333489998865
No 59
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.4e-31 Score=278.60 Aligned_cols=240 Identities=20% Similarity=0.355 Sum_probs=204.7
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++++.||.|++||+.. ..+..+.+|...+.+++|+
T Consensus 297 ~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~----------------------~~~~~~~~~~~~v~~~~~s 353 (577)
T 2ymu_A 297 QTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNG----------------------QHLQTLTGHSSSVWGVAFS 353 (577)
T ss_dssp EEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTS----------------------CEEEEECCCSSCEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCC----------------------CeeEEEeCCCCCEEEEEEC
Confidence 4577999999999999998 7888999999999999765 4456788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|++. +|++|+.||.|++|+... .. ...+.+|...|++++|+|++. +|++++.|+.|++||... ..+..+.+
T Consensus 354 ~~g~-~l~~~~~dg~v~~~~~~~-~~----~~~~~~~~~~v~~~~~s~dg~-~l~~~~~d~~v~~~~~~~--~~~~~~~~ 424 (577)
T 2ymu_A 354 PDGQ-TIASASDDKTVKLWNRNG-QL----LQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNRNG--QLLQTLTG 424 (577)
T ss_dssp TTSS-EEEEEETTSEEEEEETTC-CE----EEEEECCSSCEEEEEECTTSS-CEEEEETTSEEEEECTTC--CEEEEEEC
T ss_pred CCCC-EEEEEeCCCEEEEEcCCC-CE----EEEecCCCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCC--CEEEEecC
Confidence 9998 999999999999999643 22 245678999999999999998 899999999999999643 36778899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|...|++++|+|++ .+|++++.|+.|++||+. .+ .+..+.+|...|++++|+|++ .+|++++.|+.|++||..
T Consensus 425 ~~~~v~~~~~s~d~-~~l~~~~~d~~v~~w~~~-~~----~~~~~~~~~~~v~~~~~spd~-~~las~~~d~~i~iw~~~ 497 (577)
T 2ymu_A 425 HSSSVWGVAFSPDD-QTIASASDDKTVKLWNRN-GQ----LLQTLTGHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRN 497 (577)
T ss_dssp CSSCEEEEEECTTS-SEEEEEETTSEEEEEETT-SC----EEEEEECCSSCEEEEEECTTS-CEEEEEETTSEEEEEETT
T ss_pred CCCCeEEEEECCCC-CEEEEEcCCCEEEEEECC-CC----EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCEEEEEcCC
Confidence 99999999999999 899999999999999964 33 788899999999999999965 999999999999999964
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
... .+.+..| ...|++++|+|++. +|++++.|+ |++|+.
T Consensus 498 ~~~-----------------------~~~~~~h--~~~v~~l~~s~dg~-~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 498 GQL-----------------------LQTLTGH--SSSVRGVAFSPDGQ-TIASASDDKTVKLWNR 537 (577)
T ss_dssp SCE-----------------------EEEEECC--SSCEEEEEECTTSS-CEEEEETTSEEEEECT
T ss_pred CCE-----------------------EEEEeCC--CCCEEEEEEcCCCC-EEEEEECcCEEEEEeC
Confidence 321 1222333 25799999999996 677788888 999984
No 60
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=9.8e-32 Score=256.44 Aligned_cols=218 Identities=23% Similarity=0.338 Sum_probs=179.4
Q ss_pred EEEecCCcceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 163 LRKVAHQGCVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
..+.+|.+.|++++|+|. ...+||||+.||+|+|||+... ....+..+.+|...|.+++|
T Consensus 47 ~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~~~h~~~v~~v~~ 107 (297)
T 2pm7_B 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENG-------------------RWSQIAVHAVHSASVNSVQW 107 (297)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSS-------------------CBCCCEEECCCSSCEEEEEE
T ss_pred EEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCC-------------------ceEEEEEeecCCCceeEEEe
Confidence 467899999999999864 2379999999999999999762 12456778899999999999
Q ss_pred CCC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC------------CcEEEEEeCCCcEEE
Q 039302 242 NPV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE------------SDVFASCSVDGNIAI 307 (479)
Q Consensus 242 s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~------------~~~l~s~s~dg~I~i 307 (479)
+|+ +. +|++|+.||.|++||+....... ...+.+|...|++++|+|++ ..+|++|+.|++|+|
T Consensus 108 ~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~--~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~l 184 (297)
T 2pm7_B 108 APHEYGP-MLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKI 184 (297)
T ss_dssp CCGGGCS-EEEEEETTSEEEEEEBCSSSCBC--CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEE
T ss_pred CcCCCCc-EEEEEECCCcEEEEEecCCCcee--eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEE
Confidence 998 55 99999999999999997653321 23467899999999999973 238999999999999
Q ss_pred EEcCCCCc---eeeEEecCCCCEEEEEEcCCC--CcEEEEEeCCCeEEEEeCCCCCCCCceEEEe--ecCCCCeEEEEEe
Q 039302 308 WDTRVGKS---ALMSFKAHNADVNVISWNRLA--SCLLASGSDDGTFSIHDLRLLKGGDSVVAHF--EYHKHPVTSIEWS 380 (479)
Q Consensus 308 wD~~~~~~---~~~~~~~h~~~v~~l~~~p~~--~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~--~~h~~~I~~v~~s 380 (479)
||++.... ....+.+|...|++++|+|++ ..+||+|+.|++|+|||++..... .....+ ..|...|.+++|+
T Consensus 185 wd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~-~~~~~~~~~~~~~~v~~~~~s 263 (297)
T 2pm7_B 185 WKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP-WKKTLLKEEKFPDVLWRASWS 263 (297)
T ss_dssp EEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC-CEEEESSSSCCSSCEEEEEEC
T ss_pred EEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc-cceeeeecccCCCcEEEEEEC
Confidence 99987642 345678999999999999985 489999999999999999875320 012233 5688999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|++ .+||+++.|++|+||+....
T Consensus 264 ~~g-~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 264 LSG-NVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp SSS-CCEEEEETTSCEEEEEECTT
T ss_pred CCC-CEEEEEcCCCcEEEEEECCC
Confidence 965 89999999999999998754
No 61
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.1e-32 Score=270.29 Aligned_cols=247 Identities=15% Similarity=0.128 Sum_probs=188.3
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec---CCCCceEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG---GHKDEGYAI 239 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~l 239 (479)
....+|.+.|++++|+|++..+|++++.||.|++||+.. ..+..+. +|...|.++
T Consensus 112 ~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~----------------------~~~~~~~~~~~~~~~v~~~ 169 (383)
T 3ei3_B 112 IQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSG----------------------SVIQVFAKTDSWDYWYCCV 169 (383)
T ss_dssp ECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTS----------------------CEEEEEECCCCSSCCEEEE
T ss_pred eecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCC----------------------CceEEEeccCCCCCCeEEE
Confidence 344589999999999995448999999999999999985 2223333 345789999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC---ce
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK---SA 316 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~---~~ 316 (479)
+|+|++. +|++|+.||.|++||+.. .. ...+.+|...|.+++|+|++..+|++|+.|+.|++||+++.. .+
T Consensus 170 ~~~~~~~-~l~~~~~d~~i~i~d~~~-~~----~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 243 (383)
T 3ei3_B 170 DVSVSRQ-MLATGDSTGRLLLLGLDG-HE----IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSY 243 (383)
T ss_dssp EEETTTT-EEEEEETTSEEEEEETTS-CE----EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCE
T ss_pred EECCCCC-EEEEECCCCCEEEEECCC-CE----EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccce
Confidence 9999998 999999999999999943 22 245778999999999999998799999999999999999842 23
Q ss_pred eeEEecCCCCEEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------CCC----------eEEEE
Q 039302 317 LMSFKAHNADVNVISWNR-LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------KHP----------VTSIE 378 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p-~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------~~~----------I~~v~ 378 (479)
+..+ .|...|++++|+| ++ .+|++++.|+.|++||+++.. .+..+.+| ..+ +..++
T Consensus 244 ~~~~-~~~~~v~~~~~s~~~~-~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 317 (383)
T 3ei3_B 244 IAEM-PHEKPVNAAYFNPTDS-TKLLTTDQRNEIRVYSSYDWS----KPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAG 317 (383)
T ss_dssp EEEE-ECSSCEEEEEECTTTS-CEEEEEESSSEEEEEETTBTT----SCSEEEECCBCCCTTSCCCCCEECSSSSEEEEE
T ss_pred EEEe-cCCCceEEEEEcCCCC-CEEEEEcCCCcEEEEECCCCc----cccccccccccccccccceEEeccCCCCceEEE
Confidence 3334 7999999999999 77 899999999999999999887 34444443 233 33455
Q ss_pred EeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc
Q 039302 379 WSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 379 ~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
|+|++ .+ +++.|+.|+|||+...... ..+..|.....+..++|+|++. +|++++
T Consensus 318 ~s~dg-~~--s~s~d~~i~iwd~~~~~~~----------------------~~l~~~~~~~~~~~~~~s~~g~-~l~s~s 371 (383)
T 3ei3_B 318 RYPDD-QL--LLNDKRTIDIYDANSGGLV----------------------HQLRDPNAAGIISLNKFSPTGD-VLASGM 371 (383)
T ss_dssp CBCCT-TT--CTTCCCCEEEEETTTCCEE----------------------EEECBTTBCSCCCEEEECTTSS-EEEEEE
T ss_pred ecCCc-cc--ccCCCCeEEEEecCCCcee----------------------eeecCCCCCceEEEEEEecCcc-EEEEec
Confidence 55543 33 6678999999999876310 1122222223477779999996 677777
Q ss_pred CCCceEEeeec
Q 039302 459 ADGFNILMPSN 469 (479)
Q Consensus 459 ~dgi~iw~~~~ 469 (479)
++.|+||++.+
T Consensus 372 d~~i~iw~~~~ 382 (383)
T 3ei3_B 372 GFNILIWNRED 382 (383)
T ss_dssp TTEEEEEECC-
T ss_pred CCcEEEEecCC
Confidence 44499999753
No 62
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4e-32 Score=266.33 Aligned_cols=254 Identities=14% Similarity=0.126 Sum_probs=207.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
...|.+.|++++|+|++ .+||+++.+|.|+|||+... ....+..+.+|...|.+++|+|+
T Consensus 4 ~~~~~~~i~~~~~s~~~-~~l~~~~~d~~v~i~~~~~~-------------------~~~~~~~~~~h~~~v~~~~~~~~ 63 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDR-TQIAICPNNHEVHIYEKSGN-------------------KWVQVHELKEHNGQVTGVDWAPD 63 (372)
T ss_dssp EESCSSCCCEEEECTTS-SEEEEECSSSEEEEEEEETT-------------------EEEEEEEEECCSSCEEEEEEETT
T ss_pred ecccCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCCC-------------------cEEeeeeecCCCCcccEEEEeCC
Confidence 34599999999999998 78899999999999998761 01267788899999999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeEEe
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMSFK 321 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~ 321 (479)
+. +|++|+.||.|++||+.++.... ...+..|...|.+++|+|++. +|++++.||.|++||++.... ......
T Consensus 64 ~~-~l~~~~~dg~i~vwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 139 (372)
T 1k8k_C 64 SN-RIVTCGTDRNAYVWTLKGRTWKP--TLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKK 139 (372)
T ss_dssp TT-EEEEEETTSCEEEEEEETTEEEE--EEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred CC-EEEEEcCCCeEEEEECCCCeeee--eEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence 87 99999999999999997653211 123467889999999999998 999999999999999998753 222236
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC--------------CCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK--------------GGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~--------------~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
.|...|++++|+|++ .+|++|+.||.|++||++... ....++..+..|...|++++|+|++ .+|
T Consensus 140 ~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l 217 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNS-VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG-SRV 217 (372)
T ss_dssp TCCSCEEEEEECTTS-SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS-SEE
T ss_pred ccCCCeeEEEEcCCC-CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC-CEE
Confidence 788999999999988 899999999999999975211 0123788888999999999999965 899
Q ss_pred EEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 388 AVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
++++.|+.|++||++... .+.....+...|.+++|+|++. +++++.++.+++|++
T Consensus 218 ~~~~~d~~i~i~d~~~~~------------------------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~d~~i~i~~~ 272 (372)
T 1k8k_C 218 AWVSHDSTVCLADADKKM------------------------AVATLASETLPLLAVTFITESS-LVAAGHDCFPVLFTY 272 (372)
T ss_dssp EEEETTTEEEEEEGGGTT------------------------EEEEEECSSCCEEEEEEEETTE-EEEEETTSSCEEEEE
T ss_pred EEEeCCCEEEEEECCCCc------------------------eeEEEccCCCCeEEEEEecCCC-EEEEEeCCeEEEEEc
Confidence 999999999999998763 1222222234799999999985 777775555999999
Q ss_pred ec
Q 039302 468 SN 469 (479)
Q Consensus 468 ~~ 469 (479)
.+
T Consensus 273 ~~ 274 (372)
T 1k8k_C 273 DS 274 (372)
T ss_dssp ET
T ss_pred cC
Confidence 77
No 63
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=9.7e-33 Score=275.75 Aligned_cols=242 Identities=18% Similarity=0.276 Sum_probs=195.5
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.+....|+|++ .+||+|+.||.|+|||+.. ......+.+|...|++++|+|++. +|+
T Consensus 99 ~~~~~~~~~~~-~~l~~~~~dg~i~iwd~~~---------------------~~~~~~~~~h~~~v~~~~~~~~~~-~l~ 155 (420)
T 3vl1_A 99 YTAVDTAKLQM-RRFILGTTEGDIKVLDSNF---------------------NLQREIDQAHVSEITKLKFFPSGE-ALI 155 (420)
T ss_dssp EEEEEEECSSS-CEEEEEETTSCEEEECTTS---------------------CEEEEETTSSSSCEEEEEECTTSS-EEE
T ss_pred ceEEEEEecCC-CEEEEEECCCCEEEEeCCC---------------------cceeeecccccCccEEEEECCCCC-EEE
Confidence 34445677777 7899999999999999886 455667789999999999999998 999
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec---CCCCE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA---HNADV 327 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~---h~~~v 327 (479)
+|+.||.|++||+.++.. ...+.+|...|.+++|+|++. +|++++.||+|++||+++++ ++..+.. |...|
T Consensus 156 s~s~d~~i~iwd~~~~~~----~~~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~-~~~~~~~~~~~~~~v 229 (420)
T 3vl1_A 156 SSSQDMQLKIWSVKDGSN----PRTLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGT-TIHTFNRKENPHDGV 229 (420)
T ss_dssp EEETTSEEEEEETTTCCC----CEEEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTE-EEEEECBTTBTTCCE
T ss_pred EEeCCCeEEEEeCCCCcC----ceEEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCc-eeEEeecCCCCCCCc
Confidence 999999999999987654 245778999999999999998 99999999999999999875 5555543 34445
Q ss_pred EEE---------------------EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCC
Q 039302 328 NVI---------------------SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 328 ~~l---------------------~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~ 385 (479)
.++ +|+|++ .+|++|+.||.|++||+++.. .+..+ ..|...|++++|+|++..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~ 304 (420)
T 3vl1_A 230 NSIALFVGTDRQLHEISTSKKNNLEFGTYG-KYVIAGHVSGVITVHNVFSKE----QTIQLPSKFTCSCNSLTVDGNNAN 304 (420)
T ss_dssp EEEEEEECCCSSCGGGCCCCCCTTCSSCTT-EEEEEEETTSCEEEEETTTCC----EEEEECCTTSSCEEEEEECSSCTT
T ss_pred cEEEEecCCcceeeecccCcccceEEcCCC-CEEEEEcCCCeEEEEECCCCc----eeEEcccccCCCceeEEEeCCCCC
Confidence 544 457777 899999999999999999887 45544 558899999999997744
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceE
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNI 464 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~i 464 (479)
+|++|+.||.|++||++.... +...+..|. ...|..+.|+ ++ .+|++++.|+ |++
T Consensus 305 ~l~~g~~dg~i~vwd~~~~~~---------------------~~~~~~~~~-~~~v~~~~~~-~~-~~l~s~~~d~~v~i 360 (420)
T 3vl1_A 305 YIYAGYENGMLAQWDLRSPEC---------------------PVGEFLINE-GTPINNVYFA-AG-ALFVSSGFDTSIKL 360 (420)
T ss_dssp EEEEEETTSEEEEEETTCTTS---------------------CSEEEEEST-TSCEEEEEEE-TT-EEEEEETTTEEEEE
T ss_pred EEEEEeCCCeEEEEEcCCCcC---------------------chhhhhccC-CCCceEEEeC-CC-CEEEEecCCccEEE
Confidence 999999999999999987631 223333332 2468888666 44 4888899888 999
Q ss_pred Eeeecc
Q 039302 465 LMPSNI 470 (479)
Q Consensus 465 w~~~~~ 470 (479)
|++...
T Consensus 361 w~~~~~ 366 (420)
T 3vl1_A 361 DIISDP 366 (420)
T ss_dssp EEECCT
T ss_pred EeccCC
Confidence 998763
No 64
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.5e-32 Score=273.02 Aligned_cols=336 Identities=14% Similarity=0.196 Sum_probs=225.4
Q ss_pred CceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 039302 71 WPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDD 150 (479)
Q Consensus 71 wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (479)
-+..++.|-|+. .+|++|+ .++.|.||++........
T Consensus 29 ~~V~~v~~s~~g-----------~~la~g~-----~dg~v~iw~~~~~~~~~~--------------------------- 65 (447)
T 3dw8_B 29 DIISTVEFNHSG-----------ELLATGD-----KGGRVVIFQQEQENKIQS--------------------------- 65 (447)
T ss_dssp GSEEEEEECSSS-----------SEEEEEE-----TTSEEEEEEECC-----C---------------------------
T ss_pred CcEEEEEECCCC-----------CEEEEEc-----CCCeEEEEEecCCCCCCc---------------------------
Confidence 345678888863 2577764 678999999853211000
Q ss_pred ccCCCCCCceeEEEEecCC------------cceeEEEEecCCC-cEEEEEeCCceEEEEeCCCCccccccccccc----
Q 039302 151 EEEGGSGTPILQLRKVAHQ------------GCVNRIRAMSQNP-HICASWADTGHVQVWDFRSHLNALAESETVA---- 213 (479)
Q Consensus 151 ~~~~~~~~p~~~~~~~~H~------------~~V~~v~~~p~~~-~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~---- 213 (479)
. . .....+...+.+|. +.|++++|+|++. .+|++++.||.|+|||+..............
T Consensus 66 ~-~--~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~ 142 (447)
T 3dw8_B 66 H-S--RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGR 142 (447)
T ss_dssp C-C--CCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC-----
T ss_pred c-c--ccceeEecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCcccc
Confidence 0 0 01233455778998 8899999999874 5788889999999999875321100000000
Q ss_pred --CCCCCccc------------cCCCcEE-ecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccc----cCCC
Q 039302 214 --GHGAPQVL------------NQSPLVK-FGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN----VDPN 274 (479)
Q Consensus 214 --~~~~~~~~------------~~~~~~~-~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~----~~~~ 274 (479)
........ ...+... ..+|...|++++|+|++. +|++| .||.|++||+....... ....
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~ 220 (447)
T 3dw8_B 143 YRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPA 220 (447)
T ss_dssp ---CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCS
T ss_pred ccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccc
Confidence 00000000 0011123 368999999999999987 99998 79999999997433211 1112
Q ss_pred CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeEEecCCC------------CEEEEEEcCCCCcE
Q 039302 275 PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---ALMSFKAHNA------------DVNVISWNRLASCL 339 (479)
Q Consensus 275 ~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~~h~~------------~v~~l~~~p~~~~~ 339 (479)
.+.+|...|++++|+|++..+|++|+.||.|++||++++.. .+..+..|.. .|++++|+|++ .+
T Consensus 221 ~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~ 299 (447)
T 3dw8_B 221 NMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RY 299 (447)
T ss_dssp SGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SE
T ss_pred cccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CE
Confidence 47789999999999999844999999999999999998752 1567777775 89999999998 89
Q ss_pred EEEEeCCCeEEEEeCCC-CCCCCceEEEeecCCCC---------------eEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 340 LASGSDDGTFSIHDLRL-LKGGDSVVAHFEYHKHP---------------VTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~-~~~~~~~~~~~~~h~~~---------------I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
|++++. +.|+|||+++ .. ++..+.+|... +..++|+|++ .+|++|+.||.|+|||+..
T Consensus 300 l~~~~~-~~v~iwd~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~-~~l~s~s~dg~v~iwd~~~ 373 (447)
T 3dw8_B 300 MMTRDY-LSVKVWDLNMENR----PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSD-SVVMTGSYNNFFRMFDRNT 373 (447)
T ss_dssp EEEEES-SEEEEEETTCCSS----CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTS-SEEEEECSTTEEEEEETTT
T ss_pred EEEeeC-CeEEEEeCCCCcc----ccceeeccccccccccccccccccccceEEEECCCC-CEEEEeccCCEEEEEEcCC
Confidence 999999 9999999997 54 67788888642 3349999965 8999999999999999987
Q ss_pred CCChHHHHHHhhhcccccCCCCCCCC------------ceEE-eecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 404 EKDEEEEAEFKAKTREQVNAPEDLPP------------QLLF-IHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~p~------------~l~~-~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
..... +..... ........++ .+.. .......|..++|||++. +|++++.+++.+|.-
T Consensus 374 ~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~-~la~~~~~~~~~~~~ 444 (447)
T 3dw8_B 374 KRDIT----LEASRE-NNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKEN-IIAVATTNNLYIFQD 444 (447)
T ss_dssp CCEEE----EECCST-TCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSS-EEEEECSSCEEEEEC
T ss_pred Cccee----eeeccc-ccccccccCCccccccCCcccccccccccccCCceeEEEECCCCC-EEEEEecceeeeecc
Confidence 64210 000000 0000000000 0000 111224689999999996 788888888888864
No 65
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.5e-33 Score=274.57 Aligned_cols=311 Identities=14% Similarity=0.130 Sum_probs=218.1
Q ss_pred cccccCceeeEEEeeCCCCCCcccCCceEEEEEeecCC--CCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCC
Q 039302 66 AFHIGWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAE--KPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSD 143 (479)
Q Consensus 66 ~~~~~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~--~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (479)
.+.+.+|-.++.|.||. .+|++|-... .+-+|.|.||++..-.....
T Consensus 10 ~~~~g~PV~sv~fs~dg-----------~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~-------------------- 58 (365)
T 4h5i_A 10 SYNVGYPAYGAKFLNND-----------TLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK-------------------- 58 (365)
T ss_dssp EEECSSCEEEEEEEETT-----------EEEEEEECCSSSSSCCEEEEEEEECTTSSSHH--------------------
T ss_pred ecCCCCCEEEEEEeCCC-----------cEEEEECCCccccCCCCEEEEEEEcCCCccee--------------------
Confidence 45678999999999983 4677764211 13478999999842100000
Q ss_pred CCCCCccccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEE-----------eCCceEEEEeCCCCcccccccccc
Q 039302 144 SDDDSDDEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASW-----------ADTGHVQVWDFRSHLNALAESETV 212 (479)
Q Consensus 144 ~~~d~~~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~-----------s~dg~V~iwd~~~~~~~~~~~~~~ 212 (479)
. . ........+.+|...|.++.+.+ .++++| +.|+++++|++...........
T Consensus 59 -------~-~---~~~~~~~~l~~~~~~v~s~~~~~---~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~-- 122 (365)
T 4h5i_A 59 -------E-Q---FHILSEFALEDNDDSPTAIDASK---GIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLT-- 122 (365)
T ss_dssp -------H-H---EEEEEEEECCTTSCCCCEEEEET---TEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEE--
T ss_pred -------e-e---eeeeeEEEccCCCCceEEEEeCC---CEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEee--
Confidence 0 0 01222345678999999988765 344444 4577899999876322111000
Q ss_pred cCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEE--EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC
Q 039302 213 AGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVS--GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP 290 (479)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~s--g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp 290 (479)
.........+...+.+++|+|++. +|++ |+.|++|+|||+.+..... ...|...|.+|+|+|
T Consensus 123 ----------~~~~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~i~iwd~~~~~~~~-----~~~~~~~V~~v~fsp 186 (365)
T 4h5i_A 123 ----------SVDFDASTNADDYTKLVYISREGT-VAAIASSKVPAIMRIIDPSDLTEKF-----EIETRGEVKDLHFST 186 (365)
T ss_dssp ----------EECSSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCEEEEEETTTTEEEE-----EEECSSCCCEEEECT
T ss_pred ----------eeceeecCCcccCEEEEEEcCCCC-EEEEEECCCCCEEEEeECCCCcEEE-----EeCCCCceEEEEEcc
Confidence 000111223445688999999998 7654 4578999999998754422 224778899999999
Q ss_pred CCCcEEEEEeCCCcEEEEEcCCCCcee-eEEecCCCCEEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCCCCCceEE
Q 039302 291 TESDVFASCSVDGNIAIWDTRVGKSAL-MSFKAHNADVNVISWNRLASCLLASGSDDG----TFSIHDLRLLKGGDSVVA 365 (479)
Q Consensus 291 ~~~~~l~s~s~dg~I~iwD~~~~~~~~-~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg----~i~iwDlr~~~~~~~~~~ 365 (479)
++. ++++++. +.+++|+..++.... .....|...|.+++|+|++ .++++++.|+ .+++||+...........
T Consensus 187 dg~-~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~ 263 (365)
T 4h5i_A 187 DGK-VVAYITG-SSLEVISTVTGSCIARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSK 263 (365)
T ss_dssp TSS-EEEEECS-SCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEE
T ss_pred CCc-eEEeccc-eeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeee
Confidence 998 8888885 557777777665332 2346788899999999999 8899988887 688999877652112345
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeE
Q 039302 366 HFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKEL 444 (479)
Q Consensus 366 ~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v 444 (479)
.+.+|..+|++++|+|++ .+||+|+.|++|+|||+.+.+ .+.....+| ..|++|
T Consensus 264 ~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~------------------------~~~~~~~gH~~~V~~v 318 (365)
T 4h5i_A 264 QVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS------------------------MSKIFKQAHSFAITEV 318 (365)
T ss_dssp EEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE------------------------EEEEETTSSSSCEEEE
T ss_pred eecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc------------------------EEEEecCcccCCEEEE
Confidence 678899999999999965 999999999999999998763 222222344 479999
Q ss_pred EEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 445 HWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 445 ~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
+|+|++. +|+|++.|+ |+||++.
T Consensus 319 ~fSpdg~-~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 319 TISPDST-YVASVSAANTIHIIKLP 342 (365)
T ss_dssp EECTTSC-EEEEEETTSEEEEEECC
T ss_pred EECCCCC-EEEEEeCCCeEEEEEcC
Confidence 9999995 889999999 9999984
No 66
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.6e-31 Score=255.50 Aligned_cols=252 Identities=21% Similarity=0.288 Sum_probs=209.0
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--CCCCceEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--GHKDEGYA 238 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~ 238 (479)
......+|.+.|++++|+|++ .+|++++ ||.|++||+.... ....+..+. +|...|.+
T Consensus 43 ~~~~~~~h~~~v~~~~~~~~~-~~l~~~~-dg~i~iw~~~~~~------------------~~~~~~~~~~~~~~~~v~~ 102 (337)
T 1gxr_A 43 RQINTLNHGEVVCAVTISNPT-RHVYTGG-KGCVKVWDISHPG------------------NKSPVSQLDCLNRDNYIRS 102 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSS-SEEEEEC-BSEEEEEETTSTT------------------CCSCSEEEECSCTTSBEEE
T ss_pred ccceeccCCCceEEEEEecCC-cEEEEcC-CCeEEEEECCCCC------------------ceeeeecccccCCCCcEEE
Confidence 335667999999999999999 6888878 9999999998621 123344444 78899999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++|+|++. +|++|+.||.|++||+.+..... ...+..|...|.+++|+|++. +|++++.||.|++||+++.+ .+.
T Consensus 103 ~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~-~~~ 177 (337)
T 1gxr_A 103 CKLLPDGC-TLIVGGEASTLSIWDLAAPTPRI--KAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQT-LVR 177 (337)
T ss_dssp EEECTTSS-EEEEEESSSEEEEEECCCC--EE--EEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE-EEE
T ss_pred EEEcCCCC-EEEEEcCCCcEEEEECCCCCcce--eeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCc-eee
Confidence 99999997 99999999999999998754211 244677899999999999988 99999999999999999875 677
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
.+..|...|.+++|+|++ .+|++++.||.|++||+++.. .+..+. |...+.+++|+|++ .+|++++.|+.|++
T Consensus 178 ~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~----~~~~~~-~~~~v~~~~~s~~~-~~l~~~~~~~~i~~ 250 (337)
T 1gxr_A 178 QFQGHTDGASCIDISNDG-TKLWTGGLDNTVRSWDLREGR----QLQQHD-FTSQIFSLGYCPTG-EWLAVGMESSNVEV 250 (337)
T ss_dssp EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTE----EEEEEE-CSSCEEEEEECTTS-SEEEEEETTSCEEE
T ss_pred eeecccCceEEEEECCCC-CEEEEEecCCcEEEEECCCCc----eEeeec-CCCceEEEEECCCC-CEEEEEcCCCcEEE
Confidence 788899999999999998 899999999999999999877 566654 78899999999965 99999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
||+.... ......+...|.+++|+|++. +|++++.++ |++|++.+.
T Consensus 251 ~~~~~~~-------------------------~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~~~~~~~~ 297 (337)
T 1gxr_A 251 LHVNKPD-------------------------KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNLLNAWRTPYG 297 (337)
T ss_dssp EETTSSC-------------------------EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTC
T ss_pred EECCCCC-------------------------eEEEcCCccceeEEEECCCCC-EEEEecCCCcEEEEECCCC
Confidence 9998763 222233335799999999986 677777777 999997653
No 67
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=9.9e-32 Score=265.42 Aligned_cols=220 Identities=17% Similarity=0.214 Sum_probs=183.3
Q ss_pred ceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--CCCCce
Q 039302 159 PILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--GHKDEG 236 (479)
Q Consensus 159 p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v 236 (479)
..+...+.+|.+.|++++|+|+++.+||+|+.||.|+|||+.. ......+. +|...|
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------------------~~~~~~~~~~~h~~~v 121 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV---------------------QNKTSFIQGMGPGDAI 121 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTS---------------------TTCEEEECCCSTTCBE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC---------------------cccceeeecCCcCCce
Confidence 3455678899999999999999878999999999999999986 34444443 699999
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
.+++|+|++..+|++|+.||.|++||+....... .....+|...|.+++|+|++. +|++|+.||.|++||++. .+
T Consensus 122 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~~--~~ 196 (383)
T 3ei3_B 122 TGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQV--FAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLDG--HE 196 (383)
T ss_dssp EEEEEETTEEEEEEEEETTTEEEEEETTSCEEEE--EECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETTS--CE
T ss_pred eEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEE--EeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECCC--CE
Confidence 9999999433399999999999999998532211 122344568899999999998 999999999999999953 36
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+..+..|...|.+++|+|++..+|++|+.|+.|++||+++......++..+ .|...|++++|+|.++.+|++++.|+.|
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i 275 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEI 275 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEE
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcE
Confidence 788899999999999999994499999999999999999854323356666 6999999999999444999999999999
Q ss_pred EEEECCCCC
Q 039302 397 TIWDLSLEK 405 (479)
Q Consensus 397 ~iwdl~~~~ 405 (479)
++||++...
T Consensus 276 ~iwd~~~~~ 284 (383)
T 3ei3_B 276 RVYSSYDWS 284 (383)
T ss_dssp EEEETTBTT
T ss_pred EEEECCCCc
Confidence 999998764
No 68
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=5.9e-32 Score=263.37 Aligned_cols=257 Identities=14% Similarity=0.225 Sum_probs=206.3
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeC---CceEEEEeCCCCcccccccccccCCCCCccccCCCc-EEecCCCCc
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWAD---TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL-VKFGGHKDE 235 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~ 235 (479)
++.....+|.+.|++++|+|++..++++|+. ||.|+|||+.. .+.. ....+|...
T Consensus 9 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~---------------------~~~~~~~~~~~~~~ 67 (357)
T 3i2n_A 9 IIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH---------------------GDLKLLREIEKAKP 67 (357)
T ss_dssp EEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS---------------------SSEEEEEEEEESSC
T ss_pred HhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC---------------------CcccceeeecccCc
Confidence 4445667899999999999999888889887 99999999987 2222 223378899
Q ss_pred eEEEEeCCC---CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE------CCCCCcEEEEEeCCCcEE
Q 039302 236 GYAIDWNPV---APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW------SPTESDVFASCSVDGNIA 306 (479)
Q Consensus 236 v~~l~~s~~---~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~------sp~~~~~l~s~s~dg~I~ 306 (479)
|.+++|+|+ +. +|++|+.||.|++||+.+.... ...+.+|...|.++.| +|++. +|++++.||.|+
T Consensus 68 v~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~ 142 (357)
T 3i2n_A 68 IKCGTFGATSLQQR-YLATGDFGGNLHIWNLEAPEMP---VYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVK 142 (357)
T ss_dssp EEEEECTTCCTTTC-CEEEEETTSCEEEECTTSCSSC---SEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEE
T ss_pred EEEEEEcCCCCCCc-eEEEecCCCeEEEEeCCCCCcc---EEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEE
Confidence 999999999 45 9999999999999999876521 2457789999999955 67787 999999999999
Q ss_pred EEEcCCCCceeeEEecCCC----CEEEEE----EcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 307 IWDTRVGKSALMSFKAHNA----DVNVIS----WNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 307 iwD~~~~~~~~~~~~~h~~----~v~~l~----~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
+||+++...++..+..|.. .+.+++ |+|++ .+|++|+.||.|++||+++.. . .....|...|++++
T Consensus 143 vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~----~-~~~~~~~~~v~~~~ 216 (357)
T 3i2n_A 143 VWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEE-RVVCAGYDNGDIKLFDLRNMA----L-RWETNIKNGVCSLE 216 (357)
T ss_dssp EECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CC-CEEEEEETTSEEEEEETTTTE----E-EEEEECSSCEEEEE
T ss_pred EEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCC-CEEEEEccCCeEEEEECccCc----e-eeecCCCCceEEEE
Confidence 9999988656677766554 899998 67888 899999999999999999876 3 44567899999999
Q ss_pred EeCC--CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEE--e-ecCCCCeeeEEEeCCCCcE
Q 039302 379 WSPH--EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLF--I-HQGQKDLKELHWHTQVPGM 453 (479)
Q Consensus 379 ~sp~--~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~--~-h~g~~~V~~v~w~p~~~~l 453 (479)
|+|. ++.+|++++.|+.|++||++..... ..+. . ..+...|++++|+|+++.+
T Consensus 217 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~----------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 217 FDRKDISMNKLVATSLEGKFHVFDMRTQHPT----------------------KGFASVSEKAHKSTVWQVRHLPQNREL 274 (357)
T ss_dssp ESCSSSSCCEEEEEESTTEEEEEEEEEEETT----------------------TEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred cCCCCCCCCEEEEECCCCeEEEEeCcCCCcc----------------------cceeeeccCCCcCCEEEEEECCCCCcE
Confidence 9993 3489999999999999999876321 1111 1 1223579999999998768
Q ss_pred EEEEcCCC-ceEEeeecc
Q 039302 454 IVSTAADG-FNILMPSNI 470 (479)
Q Consensus 454 l~s~~~dg-i~iw~~~~~ 470 (479)
+++++.|| |++|++...
T Consensus 275 l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp EEEEETTSEEEEEEEECC
T ss_pred EEEEeCCCcEEEeecCCC
Confidence 88888888 999998754
No 69
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-31 Score=259.88 Aligned_cols=244 Identities=17% Similarity=0.289 Sum_probs=207.2
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.......+.+|.+.|++++|+|++ .+|++|+.||.|+|||+.. .+.+..+.+|...|.
T Consensus 21 ~~~~~~~l~~h~~~v~~~~~s~~~-~~l~~~~~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~ 78 (369)
T 3zwl_B 21 SHMKAIKLTGHERPLTQVKYNKEG-DLLFSCSKDSSASVWYSLN---------------------GERLGTLDGHTGTIW 78 (369)
T ss_dssp CSEEEEEEECCSSCEEEEEECTTS-CEEEEEESSSCEEEEETTT---------------------CCEEEEECCCSSCEE
T ss_pred cccccEEEEEeeceEEEEEEcCCC-CEEEEEeCCCEEEEEeCCC---------------------chhhhhhhhcCCcEE
Confidence 556667899999999999999998 7888999999999999987 677888999999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCC
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRV 312 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~ 312 (479)
+++|+|++. +|++++.||.|++||+.++.... .+. |...|.+++|+|++. +|++++.+ |.|++||++.
T Consensus 79 ~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~----~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 79 SIDVDCFTK-YCVTGSADYSIKLWDVSNGQCVA----TWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp EEEECTTSS-EEEEEETTTEEEEEETTTCCEEE----EEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEE
T ss_pred EEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE----Eee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecC
Confidence 999999987 99999999999999998765422 233 788999999999998 89999988 9999999987
Q ss_pred CCc----------eeeEEecCCC--CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 313 GKS----------ALMSFKAHNA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 313 ~~~----------~~~~~~~h~~--~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
... ....+..|.. .+.+++|+|++ .+|++|+.||.|++||+++... ++..+..|...|++++|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~v~~~~~~ 227 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKG-KYIIAGHKDGKISKYDVSNNYE---YVDSIDLHEKSISDMQFS 227 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGG-CEEEEEETTSEEEEEETTTTTE---EEEEEECCSSCEEEEEEC
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEcCCC-CEEEEEcCCCEEEEEECCCCcE---eEEEEecCCCceeEEEEC
Confidence 632 3444556666 89999999998 8999999999999999998432 788999999999999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
|++ .+|++++.|+.|++||+.... .+........+..++|+|++..++++++.+
T Consensus 228 ~~~-~~l~~~~~d~~i~v~d~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 281 (369)
T 3zwl_B 228 PDL-TYFITSSRDTNSFLVDVSTLQ-------------------------VLKKYETDCPLNTAVITPLKEFIILGGGQE 281 (369)
T ss_dssp TTS-SEEEEEETTSEEEEEETTTCC-------------------------EEEEEECSSCEEEEEECSSSSEEEEEECCC
T ss_pred CCC-CEEEEecCCceEEEEECCCCc-------------------------eeeeecCCCCceeEEecCCCceEEEeecCC
Confidence 955 999999999999999998763 233333456899999999998666666555
No 70
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-31 Score=250.62 Aligned_cols=246 Identities=18% Similarity=0.256 Sum_probs=200.1
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
.......|.+.|++++|+|++ .+|++++.||.|++|++.... ..+++..+.+|...|.+++
T Consensus 51 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~~~~~~~~~------------------~~~~~~~~~~~~~~i~~~~ 111 (313)
T 3odt_A 51 LGTVVYTGQGFLNSVCYDSEK-ELLLFGGKDTMINGVPLFATS------------------GEDPLYTLIGHQGNVCSLS 111 (313)
T ss_dssp EEEEEEECSSCEEEEEEETTT-TEEEEEETTSCEEEEETTCCT------------------TSCC-CEECCCSSCEEEEE
T ss_pred EEEEeecCCccEEEEEECCCC-CEEEEecCCCeEEEEEeeecC------------------CCCcccchhhcccCEEEEE
Confidence 345677899999999999998 788899999999999997621 2456778889999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
| ++. +|++|+.||.|++||. ... ...+..|...|.+++|+|.....|++++.||.|++||.. .....+
T Consensus 112 ~--~~~-~l~~~~~d~~i~~~d~--~~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~ 179 (313)
T 3odt_A 112 F--QDG-VVISGSWDKTAKVWKE--GSL----VYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND---KVIKTF 179 (313)
T ss_dssp E--ETT-EEEEEETTSEEEEEET--TEE----EEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT---EEEEEE
T ss_pred e--cCC-EEEEEeCCCCEEEEcC--CcE----EEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC---ceEEEE
Confidence 9 344 9999999999999992 111 244678999999999998434499999999999999943 245566
Q ss_pred ec-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 321 KA-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 321 ~~-h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
.. |...|.+++|+|++ . |++|+.||.|++||+++.+ ++..+.+|..+|++++|+|++ .|++++.|+.|++|
T Consensus 180 ~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~v~iw 251 (313)
T 3odt_A 180 SGIHNDVVRHLAVVDDG-H-FISCSNDGLIKLVDMHTGD----VLRTYEGHESFVYCIKLLPNG--DIVSCGEDRTVRIW 251 (313)
T ss_dssp CSSCSSCEEEEEEEETT-E-EEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEECTTS--CEEEEETTSEEEEE
T ss_pred eccCcccEEEEEEcCCC-e-EEEccCCCeEEEEECCchh----hhhhhhcCCceEEEEEEecCC--CEEEEecCCEEEEE
Confidence 55 89999999999998 5 9999999999999999887 899999999999999999965 58899999999999
Q ss_pred ECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 400 DLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 400 dl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
|+..... ...+..| ...|.+++|+|++. +++++.++.|++|++.+.
T Consensus 252 d~~~~~~----------------------~~~~~~~--~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 252 SKENGSL----------------------KQVITLP--AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp CTTTCCE----------------------EEEEECS--SSCEEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred ECCCCce----------------------eEEEecc--CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence 9987631 0122222 34799999999986 555444444999998765
No 71
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.9e-31 Score=270.26 Aligned_cols=248 Identities=21% Similarity=0.260 Sum_probs=207.9
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ ++++|+.||+|++||+.. .+.+..+.+|...|.+++
T Consensus 154 ~~~~~~~h~~~V~~l~~~~~~--~l~s~s~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~~l~ 210 (464)
T 3v7d_B 154 FLLQLSGHDGGVWALKYAHGG--ILVSGSTDRTVRVWDIKK---------------------GCCTHVFEGHNSTVRCLD 210 (464)
T ss_dssp EEEEECCCSSCEEEEEECSTT--EEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEE
T ss_pred EEEEEeCCCcCEEEEEEcCCC--EEEEEeCCCCEEEEECCC---------------------CcEEEEECCCCCccEEEE
Confidence 445677999999999999987 888999999999999987 567788999999999999
Q ss_pred eCC--CCCCeEEEEeCCCeEEEEecCCCCcccc-------------------CCCCcccCCCcEEEEEECCCCCcEEEEE
Q 039302 241 WNP--VAPGRLVSGDCNSCIHLWEPASDATWNV-------------------DPNPFIGHAASVEDLQWSPTESDVFASC 299 (479)
Q Consensus 241 ~s~--~~~~~l~sg~~dg~I~lwd~~~~~~~~~-------------------~~~~~~~h~~~V~~l~~sp~~~~~l~s~ 299 (479)
|++ ++. +|++|+.||.|++||+.+...... ....+.+|...|.++. +++. ++++|
T Consensus 211 ~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~-~l~~~ 286 (464)
T 3v7d_B 211 IVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--GHGN-IVVSG 286 (464)
T ss_dssp EEESSSCE-EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--EETT-EEEEE
T ss_pred EecCCCCC-EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--CCCC-EEEEE
Confidence 995 444 899999999999999987543210 0123567888898885 5566 99999
Q ss_pred eCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 300 SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 300 s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
+.||.|++||+++.+ ++..+.+|...|.+++|+|++ .+|++|+.||.|++||++++. ++..+.+|...|++++|
T Consensus 287 ~~d~~i~vwd~~~~~-~~~~~~~~~~~v~~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~----~~~~~~~h~~~v~~~~~ 360 (464)
T 3v7d_B 287 SYDNTLIVWDVAQMK-CLYILSGHTDRIYSTIYDHER-KRCISASMDTTIRIWDLENGE----LMYTLQGHTALVGLLRL 360 (464)
T ss_dssp ETTSCEEEEETTTTE-EEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEEEEEE
T ss_pred eCCCeEEEEECCCCc-EEEEecCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCc----EEEEEeCCCCcEEEEEE
Confidence 999999999999875 778888999999999999998 899999999999999999987 89999999999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
++ .+|++++.||.|++||+.... .....+ ....+..++|+|++. +++++++
T Consensus 361 ~~---~~l~s~s~dg~v~vwd~~~~~------------------------~~~~~~-~~~~~~~~~~~~~~~-~l~~~~d 411 (464)
T 3v7d_B 361 SD---KFLVSAAADGSIRGWDANDYS------------------------RKFSYH-HTNLSAITTFYVSDN-ILVSGSE 411 (464)
T ss_dssp CS---SEEEEEETTSEEEEEETTTCC------------------------EEEEEE-CTTCCCEEEEEECSS-EEEEEET
T ss_pred cC---CEEEEEeCCCcEEEEECCCCc------------------------eeeeec-CCCCccEEEEEeCCC-EEEEecC
Confidence 84 799999999999999998763 223333 234688889999985 7777775
Q ss_pred CCceEEeeecc
Q 039302 460 DGFNILMPSNI 470 (479)
Q Consensus 460 dgi~iw~~~~~ 470 (479)
+.|++|++.+.
T Consensus 412 g~i~iwd~~~g 422 (464)
T 3v7d_B 412 NQFNIYNLRSG 422 (464)
T ss_dssp TEEEEEETTTC
T ss_pred CeEEEEECCCC
Confidence 55999998664
No 72
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.8e-32 Score=261.02 Aligned_cols=222 Identities=23% Similarity=0.339 Sum_probs=180.6
Q ss_pred eEEEEecCCcceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
+...+.+|.+.|++++|+|. ...+||+|+.||+|+|||+... ....+..+.+|...|.++
T Consensus 49 ~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~~~h~~~V~~v 109 (316)
T 3bg1_A 49 LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENG-------------------TWEKSHEHAGHDSSVNSV 109 (316)
T ss_dssp EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS-------------------CCCEEEEECCCSSCCCEE
T ss_pred EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC-------------------cceEEEEccCCCCceEEE
Confidence 34567899999999999864 2378999999999999999761 124566788999999999
Q ss_pred EeCCC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC----------------CcEEEEEeC
Q 039302 240 DWNPV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE----------------SDVFASCSV 301 (479)
Q Consensus 240 ~~s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~----------------~~~l~s~s~ 301 (479)
+|+|+ +. +|++|+.||.|++|++.....+.. ...+.+|...|.+++|+|+. ..+|++|+.
T Consensus 110 ~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 187 (316)
T 3bg1_A 110 CWAPHDYGL-ILACGSSDGAISLLTYTGEGQWEV-KKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGC 187 (316)
T ss_dssp EECCTTTCS-CEEEECSSSCEEEEEECSSSCEEE-CCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBT
T ss_pred EECCCCCCc-EEEEEcCCCCEEEEecCCCCCcce-eeeeccccCCcceEEEccccCCccccccccccCccccceEEEecC
Confidence 99998 44 899999999999999976543321 24567899999999999973 138999999
Q ss_pred CCcEEEEEcCCCC--ceeeEEecCCCCEEEEEEcCCC---CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 302 DGNIAIWDTRVGK--SALMSFKAHNADVNVISWNRLA---SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 302 dg~I~iwD~~~~~--~~~~~~~~h~~~v~~l~~~p~~---~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
|++|+|||++... .++..+.+|...|++++|+|++ ..+||+|+.||+|+|||++...........+..|...|++
T Consensus 188 D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~ 267 (316)
T 3bg1_A 188 DNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWH 267 (316)
T ss_dssp TSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEE
T ss_pred CCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEE
Confidence 9999999998653 2556678999999999999985 3689999999999999998742111123345678999999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
++|+|++ .+||+++.|++|+||++...
T Consensus 268 v~~sp~g-~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 268 VSWSITA-NILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp EEECTTT-CCEEEEESSSCEEEEEECTT
T ss_pred EEEcCCC-CEEEEEcCCCeEEEEEECCC
Confidence 9999965 89999999999999998643
No 73
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.7e-31 Score=261.64 Aligned_cols=281 Identities=15% Similarity=0.259 Sum_probs=207.1
Q ss_pred EEEecCCcceeEEEEec-CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE-----EecCCCCce
Q 039302 163 LRKVAHQGCVNRIRAMS-QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-----KFGGHKDEG 236 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v 236 (479)
..+.+|.+.|++++|+| ++ .+||+|+.||.|+|||+......... ...... ...+|...|
T Consensus 37 ~~~~~h~~~v~~~~~s~~~~-~~l~~~~~dg~i~iw~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~v 102 (408)
T 4a11_B 37 DVERIHGGGINTLDIEPVEG-RYMLSGGSDGVIVLYDLENSSRQSYY-------------TCKAVCSIGRDHPDVHRYSV 102 (408)
T ss_dssp EECCCCSSCEEEEEECTTTC-CEEEEEETTSCEEEEECCCCSSSSCE-------------EECEEEEECTTCTTCCSSCE
T ss_pred eeeeccCCcEEEEEEecCCC-CEEEEEcCCCeEEEEECCCCcccceE-------------eccccccccccccccCCCcE
Confidence 35668999999999999 77 79999999999999999873111000 000000 013699999
Q ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCC--cEEEEEeCCCcEEEEEcCCCC
Q 039302 237 YAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTES--DVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~--~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.+++|+|++..+|++|+.||.|++||+.++.... ...+...+.++.|+|.+. .++++++.||.|++||++++.
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 177 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD-----VFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS 177 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEE-----EEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccce-----eccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence 9999999554599999999999999998754322 234678899999998643 289999999999999999875
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe---------------ecCCCCeEEEEE
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF---------------EYHKHPVTSIEW 379 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~---------------~~h~~~I~~v~~ 379 (479)
.+..+..|...|++++|+|++..+|++|+.||.|++||++.... ++..+ ..|...|++++|
T Consensus 178 -~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 253 (408)
T 4a11_B 178 -CSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG---CLITLDQHNGKKSQAVESANTAHNGKVNGLCF 253 (408)
T ss_dssp -CCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSC---CSEECCTTTTCSCCCTTTSSCSCSSCEEEEEE
T ss_pred -eeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCc---ccccccccccccceeeccccccccCceeEEEE
Confidence 67788899999999999999966899999999999999998764 44444 578999999999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccccc-CCCC------------------------CCCCceEEe
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQV-NAPE------------------------DLPPQLLFI 434 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~-~~~~------------------------~~p~~l~~~ 434 (479)
+|++ .+|++++.|+.|++||+......... ........ .... ......+..
T Consensus 254 ~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~ 329 (408)
T 4a11_B 254 TSDG-LHLLTVGTDNRMRLWNSSNGENTLVN---YGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM 329 (408)
T ss_dssp CTTS-SEEEEEETTSCEEEEETTTCCBCCCC---CCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE
T ss_pred cCCC-CEEEEecCCCeEEEEECCCCccceec---cccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceee
Confidence 9954 99999999999999999876421000 00000000 0000 001122222
Q ss_pred ecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 435 HQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 435 h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
..+| ..|++++|+|++. +|++++.|| |++|++.+..
T Consensus 330 ~~~~~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 330 LKGHYKTVDCCVFQSNFQ-ELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp ECCCSSCEEEEEEETTTT-EEEEEETTSCEEEEEECC--
T ss_pred eccCCCeEEEEEEcCCCC-EEEEECCCCeEEEEeCCCCC
Confidence 2333 4799999999986 777787777 9999997763
No 74
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2e-31 Score=288.79 Aligned_cols=251 Identities=22% Similarity=0.290 Sum_probs=212.8
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
....+.+|.+.|++++|+|++ .+||+|+.||.|+|||+.. .+.+..+.+|...|.+++
T Consensus 47 ~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~---------------------~~~~~~~~~~~~~v~~~~ 104 (814)
T 3mkq_A 47 EVRSIQVTETPVRAGKFIARK-NWIIVGSDDFRIRVFNYNT---------------------GEKVVDFEAHPDYIRSIA 104 (814)
T ss_dssp EEEEEECCSSCEEEEEEEGGG-TEEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEE
T ss_pred eEEEEecCCCcEEEEEEeCCC-CEEEEEeCCCeEEEEECCC---------------------CcEEEEEecCCCCEEEEE
Confidence 345677899999999999999 7888999999999999987 677888999999999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC-CCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP-TESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
|+|++. +|++|+.||.|++|++.++.... ..+.+|...|.+++|+| ++. .|++++.||.|++||++... ....
T Consensus 105 ~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~-~~~~ 178 (814)
T 3mkq_A 105 VHPTKP-YVLSGSDDLTVKLWNWENNWALE---QTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQST-PNFT 178 (814)
T ss_dssp ECSSSS-EEEEEETTSEEEEEEGGGTSEEE---EEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSS-CSEE
T ss_pred EeCCCC-EEEEEcCCCEEEEEECCCCceEE---EEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCc-ceeE
Confidence 999998 99999999999999997753322 45678999999999999 555 99999999999999998876 4444
Q ss_pred Ee-cCCCCEEEEEEcC--CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 320 FK-AHNADVNVISWNR--LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 320 ~~-~h~~~v~~l~~~p--~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+. .+...+++++|+| ++ .+|++|+.||.|++||+++.. ++..+.+|...|++++|+|++ .+|++++.||.|
T Consensus 179 ~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~~d~~~~~----~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~v 252 (814)
T 3mkq_A 179 LTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKIWDYQTKS----CVATLEGHMSNVSFAVFHPTL-PIIISGSEDGTL 252 (814)
T ss_dssp EECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEEEETTTTE----EEEEEECCSSCEEEEEECSSS-SEEEEEETTSCE
T ss_pred EecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEEEECCCCc----EEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCeE
Confidence 44 4448899999999 77 899999999999999999877 788999999999999999965 899999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcE-EEEEcCCCceEEeeec
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGM-IVSTAADGFNILMPSN 469 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~l-l~s~~~dgi~iw~~~~ 469 (479)
++||+.... .+.....+...|.+++|+|++..+ +++++++++.+|++..
T Consensus 253 ~vwd~~~~~------------------------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (814)
T 3mkq_A 253 KIWNSSTYK------------------------VEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (814)
T ss_dssp EEEETTTCS------------------------EEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC
T ss_pred EEEECCCCc------------------------EEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC
Confidence 999998763 122222223579999999998654 7778877788888654
No 75
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=274.32 Aligned_cols=267 Identities=13% Similarity=0.246 Sum_probs=201.0
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC------------C
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK------------D 234 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~ 234 (479)
.|.+.|++++|+|++ .+||+|+.||.|+||++......... ..........+.+|. .
T Consensus 26 ~~~~~V~~v~~s~~g-~~la~g~~dg~v~iw~~~~~~~~~~~----------~~~~~~~~~~~~~h~~~~~~~~~~~~~~ 94 (447)
T 3dw8_B 26 AEADIISTVEFNHSG-ELLATGDKGGRVVIFQQEQENKIQSH----------SRGEYNVYSTFQSHEPEFDYLKSLEIEE 94 (447)
T ss_dssp CGGGSEEEEEECSSS-SEEEEEETTSEEEEEEECC-----CC----------CCCCEEEEEEEECCCCEEEGGGTEEECC
T ss_pred cccCcEEEEEECCCC-CEEEEEcCCCeEEEEEecCCCCCCcc----------cccceeEecccccccccccccccccccC
Confidence 467899999999998 78999999999999999863210000 000123467888998 8
Q ss_pred ceEEEEeCCCCC-CeEEEEeCCCeEEEEecCCCCcccc------------------C------------------CCCcc
Q 039302 235 EGYAIDWNPVAP-GRLVSGDCNSCIHLWEPASDATWNV------------------D------------------PNPFI 277 (479)
Q Consensus 235 ~v~~l~~s~~~~-~~l~sg~~dg~I~lwd~~~~~~~~~------------------~------------------~~~~~ 277 (479)
.|.+++|+|++. .+|++|+.||.|++|++.+...... . .....
T Consensus 95 ~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (447)
T 3dw8_B 95 KINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFAN 174 (447)
T ss_dssp CCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECS
T ss_pred ceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEecc
Confidence 899999999983 2899999999999999865321000 0 01135
Q ss_pred cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee-------EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEE
Q 039302 278 GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM-------SFKAHNADVNVISWNRLASCLLASGSDDGTFS 350 (479)
Q Consensus 278 ~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~-------~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~ 350 (479)
+|...|.+++|+|++. +|++| .||.|++||++.....+. .+..|...|++++|+|++..+|++|+.||.|+
T Consensus 175 ~h~~~v~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~ 252 (447)
T 3dw8_B 175 AHTYHINSISINSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR 252 (447)
T ss_dssp CCSSCCCEEEECTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred CCCcceEEEEEcCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence 7999999999999988 89998 799999999995433333 25689999999999999878999999999999
Q ss_pred EEeCCCCCCCCceEEEeecCCC------------CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcc
Q 039302 351 IHDLRLLKGGDSVVAHFEYHKH------------PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTR 418 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~~h~~------------~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~ 418 (479)
+||+++.......+..+..|.. .|++++|+|++ .+|++++. +.|+|||++....
T Consensus 253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~~~~~------------ 318 (447)
T 3dw8_B 253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLNMENR------------ 318 (447)
T ss_dssp EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETTCCSS------------
T ss_pred EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCCCCcc------------
Confidence 9999988732223788888876 99999999955 89999998 9999999987321
Q ss_pred cccCCCCCCCCceEEeecCCC-------------CeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 419 EQVNAPEDLPPQLLFIHQGQK-------------DLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 419 ~~~~~~~~~p~~l~~~h~g~~-------------~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+...+..|.... .+..++|+|++. +|++++.|| |++|++.+.
T Consensus 319 ---------~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 319 ---------PVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp ---------CSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTC
T ss_pred ---------ccceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCC
Confidence 123334443111 134599999996 668888888 999998643
No 76
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-32 Score=281.49 Aligned_cols=256 Identities=12% Similarity=0.128 Sum_probs=194.4
Q ss_pred EecCCcceeEEEEecCC-C-------cEEEE-------------------EeCCceEEEEeCCCCcccccccccccCCCC
Q 039302 165 KVAHQGCVNRIRAMSQN-P-------HICAS-------------------WADTGHVQVWDFRSHLNALAESETVAGHGA 217 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~-~-------~~lat-------------------~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~ 217 (479)
...+.+.|.+|+|+|++ . .+||+ ++.||+|+||++.....
T Consensus 129 ~~~~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~------------- 195 (524)
T 2j04_B 129 IYNVGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL------------- 195 (524)
T ss_dssp EEECCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC-------------
T ss_pred EEECCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC-------------
Confidence 34478999999999986 1 45555 55789999999876110
Q ss_pred CccccCCCcEEecCCCCceEEEEeCCCC-----CCeEEEEeCCCeEEEEecCCCCcc-------ccCCCCcccCCCcEEE
Q 039302 218 PQVLNQSPLVKFGGHKDEGYAIDWNPVA-----PGRLVSGDCNSCIHLWEPASDATW-------NVDPNPFIGHAASVED 285 (479)
Q Consensus 218 ~~~~~~~~~~~~~~h~~~v~~l~~s~~~-----~~~l~sg~~dg~I~lwd~~~~~~~-------~~~~~~~~~h~~~V~~ 285 (479)
......++.+|.+.|++|+|+|.+ .++||+|+.||+|+|||+...... ......+.+|...|++
T Consensus 196 ----~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~s 271 (524)
T 2j04_B 196 ----HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITT 271 (524)
T ss_dssp ----CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEE
T ss_pred ----CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEE
Confidence 001124567788899999999972 239999999999999999765321 0011246789999999
Q ss_pred EEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE--EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce
Q 039302 286 LQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI--SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 286 l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l--~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~ 363 (479)
++|++. . .|++|+.||+|++||++++..+...+.+|...|++| +|+|++..+||||+.|++|+|||+++.+ +
T Consensus 272 v~~s~~-~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~----~ 345 (524)
T 2j04_B 272 FDFLSP-T-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA----T 345 (524)
T ss_dssp EEESSS-S-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH----H
T ss_pred EEecCC-C-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC----c
Confidence 999985 3 799999999999999998755666788999999999 5677654799999999999999999877 5
Q ss_pred EEEeecCCC--CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCe
Q 039302 364 VAHFEYHKH--PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDL 441 (479)
Q Consensus 364 ~~~~~~h~~--~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V 441 (479)
+..+.+|.. .|++++|+|++ ..|++++.|++|++||++.... ...+..|. ..|
T Consensus 346 ~~~~~~~~~~~~v~~v~fsp~~-~~l~s~~~d~tv~lwd~~~~~~----------------------~~~l~gH~--~~V 400 (524)
T 2j04_B 346 TKTTVSRFRGSNLVPVVYCPQI-YSYIYSDGASSLRAVPSRAAFA----------------------VHPLVSRE--TTI 400 (524)
T ss_dssp HCEEEEECSCCSCCCEEEETTT-TEEEEECSSSEEEEEETTCTTC----------------------CEEEEECS--SCE
T ss_pred ccccccccccCcccceEeCCCc-CeEEEeCCCCcEEEEECccccc----------------------ceeeecCC--Cce
Confidence 566666653 58999999965 7899999999999999987632 12233443 579
Q ss_pred eeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 442 KELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 442 ~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
++|+|+|+++ +|+|++.|+ |++|++..
T Consensus 401 ~sva~Sp~g~-~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 401 TAIGVSRLHP-MVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EEEECCSSCC-BCEEEETTTEEECCBSCS
T ss_pred EEEEeCCCCC-eEEEEECCCEEEEEechH
Confidence 9999999997 677888888 99998643
No 77
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=294.71 Aligned_cols=263 Identities=19% Similarity=0.280 Sum_probs=210.6
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++ .+|++|+.||.|+|||+... ....+..+.+|...|++++|+
T Consensus 3 ~~l~gH~~~V~~l~~s~dg-~~latg~~dg~I~vwd~~~~-------------------~~~~~~~l~~h~~~V~~l~~s 62 (753)
T 3jro_A 3 VIANAHNELIHDAVLDYYG-KRLATCSSDKTIKIFEVEGE-------------------THKLIDTLTGHEGPVWRVDWA 62 (753)
T ss_dssp -----CCCCEEEECCCSSS-CCEEEEETTTEEEEEEEETT-------------------EEEEEEEECCCSSCEEEEEEC
T ss_pred eecccCcceeEEEEECCCC-CeEEEEECCCcEEEEecCCC-------------------CCccceeccCCcCceEEEEec
Confidence 3567999999999999998 68889999999999998741 145677889999999999999
Q ss_pred CC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC--CCcEEEEEeCCCcEEEEEcCCCCc-ee
Q 039302 243 PV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT--ESDVFASCSVDGNIAIWDTRVGKS-AL 317 (479)
Q Consensus 243 ~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~dg~I~iwD~~~~~~-~~ 317 (479)
++ +. +|++|+.||.|++||+.++.... ...+.+|...|.+++|+|+ +. +|++|+.||.|++||++.... ..
T Consensus 63 ~~~~~~-~l~s~s~Dg~I~vwd~~~~~~~~--~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 63 HPKFGT-ILASCSYDGKVLIWKEENGRWSQ--IAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp CTTSCS-EEEEEETTSCEEEEEEETTEEEE--EEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCCC
T ss_pred CCCCCC-EEEEEeCCCeEEEEECCCCcccc--cccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcce
Confidence 88 65 99999999999999998753211 2456789999999999999 76 999999999999999998732 45
Q ss_pred eEEecCCCCEEEEEEcCC------------CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC--
Q 039302 318 MSFKAHNADVNVISWNRL------------ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE-- 383 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~------------~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~-- 383 (479)
..+..|...|.+++|+|. ++.+|++|+.||.|++||++.......++..+.+|..+|++++|+|++
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCC
Confidence 566889999999999995 238999999999999999998753234677888999999999999973
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-c
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-F 462 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i 462 (479)
+.+|++|+.||.|++||+...... ....+.....+...|++++|+|++. ++++++.|| |
T Consensus 219 ~~~l~s~s~Dg~I~iwd~~~~~~~-------------------~~~~~~~~~~~~~~v~~l~~spdg~-~l~s~s~Dg~I 278 (753)
T 3jro_A 219 RSYLASVSQDRTCIIWTQDNEQGP-------------------WKKTLLKEEKFPDVLWRASWSLSGN-VLALSGGDNKV 278 (753)
T ss_dssp SEEEEEEESSSCEEEEEESSSSSC-------------------CBCCBSSSSCCSSCCCCEEECTTTC-CEEEECSSSCE
T ss_pred CCEEEEEecCCEEEEecCCCCCCc-------------------ceeEEeccCCCCCceEEEEEcCCCC-EEEEEcCCCEE
Confidence 699999999999999999876310 0001111112234799999999986 666666677 9
Q ss_pred eEEeeec
Q 039302 463 NILMPSN 469 (479)
Q Consensus 463 ~iw~~~~ 469 (479)
++|++..
T Consensus 279 ~vwd~~~ 285 (753)
T 3jro_A 279 TLWKENL 285 (753)
T ss_dssp ECCBCCS
T ss_pred EEEecCC
Confidence 9999874
No 78
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.4e-31 Score=266.43 Aligned_cols=255 Identities=16% Similarity=0.247 Sum_probs=207.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC-CCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP-VAPG 247 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~~ 247 (479)
....+.++++|+...++++++.+|.|+||++..... ....+..+.+|...|++++|+| ++.
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~-----------------~~~~~~~~~~h~~~V~~~~~~p~~~~- 95 (402)
T 2aq5_A 34 TWDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR-----------------VDKNVPLVCGHTAPVLDIAWCPHNDN- 95 (402)
T ss_dssp CCSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE-----------------CCTTCCCBCCCSSCEEEEEECTTCTT-
T ss_pred ccCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC-----------------CCCCCceEecCCCCEEEEEeCCCCCC-
Confidence 345667899998866777889999999999976211 1234556789999999999999 665
Q ss_pred eEEEEeCCCeEEEEecCCCCccc---cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE--ec
Q 039302 248 RLVSGDCNSCIHLWEPASDATWN---VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF--KA 322 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~---~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~--~~ 322 (479)
+|++|+.||.|+||++.++.... .....+.+|...|.+++|+|++.++|++|+.||.|+|||+++++ .+..+ ..
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~ 174 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA-AVLTLGPDV 174 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE-EEEEECTTT
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC-ccEEEecCC
Confidence 99999999999999998753211 11345778999999999999986699999999999999999875 66777 78
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCC-eEEEEEeCCCCCEEEEE---eCCCcEE
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHP-VTSIEWSPHEGSTLAVS---SADNQLT 397 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~-I~~v~~sp~~~~~las~---s~Dg~I~ 397 (479)
|...|++++|+|++ .+|++|+.||.|++||+++.. .+..+ ..|... +.++.|+|++ .+|++| +.|+.|+
T Consensus 175 ~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~~~~d~~i~ 248 (402)
T 2aq5_A 175 HPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGT----VVAEKDRPHEGTRPVHAVFVSEG-KILTTGFSRMSERQVA 248 (402)
T ss_dssp CCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTE----EEEEEECSSCSSSCCEEEECSTT-EEEEEEECTTCCEEEE
T ss_pred CCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCc----eeeeeccCCCCCcceEEEEcCCC-cEEEEeccCCCCceEE
Confidence 99999999999988 899999999999999999987 77777 788876 8999999964 899998 7899999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+||++.... + .......+...|..++|+|++..++++++.|+ |++|++.+.
T Consensus 249 iwd~~~~~~---------------------~-~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 249 LWDTKHLEE---------------------P-LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp EEETTBCSS---------------------C-SEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred EEcCccccC---------------------C-ceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 999987632 1 12223233457999999999987777787676 999998754
No 79
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.7e-30 Score=246.62 Aligned_cols=250 Identities=23% Similarity=0.361 Sum_probs=202.9
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.......+|...|++++|+|++ .+||+|+.||+|+||++.. .+.+..+.+|...+.++
T Consensus 58 ~~~~~~~~~~~~V~~v~~~~~~-~~l~sgs~Dg~v~iw~~~~---------------------~~~~~~~~~h~~~~~~~ 115 (318)
T 4ggc_A 58 LQLLQMEQPGEYISSVAWIKEG-NYLAVGTSSAEVQLWDVQQ---------------------QKRLRNMTSHSARVGSL 115 (318)
T ss_dssp EEEEECCSTTCCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEE
T ss_pred EEEEEecCCCCeEEEEEECCCC-CEEEEEECCCcEEEeecCC---------------------ceeEEEecCccceEEEe
Confidence 3334566889999999999999 7889999999999999987 67788899999988887
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc---e
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS---A 316 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~ 316 (479)
.+.+ . .|++|+.++.+++|+........ ..+.+|...+..+.|++.+. +|++++.||+|++||+++++. .
T Consensus 116 ~~~~--~-~l~s~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~ 188 (318)
T 4ggc_A 116 SWNS--Y-ILSSGSRSGHIHHHDVRVAEHHV---ATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVP 188 (318)
T ss_dssp EEET--T-EEEEEETTSEEEEEETTSSSCEE---EEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCC
T ss_pred ecCC--C-EEEEEecCCceEeeecCCCceeE---EEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCcccccc
Confidence 7654 4 89999999999999987654322 45678999999999999998 999999999999999998642 3
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEE--EEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE--eC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLL--ASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS--SA 392 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l--~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~--s~ 392 (479)
......+...|.++.++|.+..++ ++|+.++.|++||.+... .. ....|...+..+.|+|.+ ..++++ +.
T Consensus 189 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~----~~-~~~~~~~~v~~~~~~~~~-~~~~~~sg~~ 262 (318)
T 4ggc_A 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA----CL-SAVDAHSQVCSILWSPHY-KELISGHGFA 262 (318)
T ss_dssp SEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC----EE-EEEECSSCEEEEEEETTT-TEEEEEECTT
T ss_pred eeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc----cc-ccccceeeeeeeeecccc-cceEEEEEcC
Confidence 445567888999999999886665 456788999999998876 33 345578889999999977 544443 37
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
|+.|+|||+.+.. ++....+| ..|++++|+|++. +|+|++.|+ |+||++..+
T Consensus 263 d~~i~iwd~~~~~-------------------------~~~~l~gH~~~V~~l~~spdg~-~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 263 QNQLVIWKYPTMA-------------------------KVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TCCEEEEETTTCC-------------------------EEEEECCCSSCEEEEEECTTSS-CEEEEETTTEEEEECCSCC
T ss_pred CCEEEEEECCCCc-------------------------EEEEEcCCCCCEEEEEEcCCCC-EEEEEecCCeEEEEECCCC
Confidence 9999999998763 23333344 4799999999986 788888888 999998654
No 80
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=6.6e-32 Score=268.16 Aligned_cols=239 Identities=11% Similarity=0.069 Sum_probs=171.3
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC--------CCCCeEEEEeC
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP--------VAPGRLVSGDC 254 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~--------~~~~~l~sg~~ 254 (479)
.+||+++.|++|+|||+...... ...++..+.+|.+.|++++|+| ++. +||||+.
T Consensus 102 ~~las~~~d~~v~lw~~~~~~~~----------------~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~ 164 (393)
T 4gq1_A 102 LFLACVCQDNTVRLIITKNETII----------------TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGD 164 (393)
T ss_dssp EEEEEEETTSCEEEEEEETTEEE----------------EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEET
T ss_pred CEEEEEeCCCcEEEEECCCCccc----------------eeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEEC
Confidence 78999999999999998762110 0123345789999999999998 565 9999999
Q ss_pred CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee-----------------
Q 039302 255 NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL----------------- 317 (479)
Q Consensus 255 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~----------------- 317 (479)
|++|+|||+.+.... ..+.+|...|.+++|+|++.++|++|+.||+|++||+++++...
T Consensus 165 D~tv~~Wd~~~~~~~----~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~ 240 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPI----LAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN 240 (393)
T ss_dssp TSEEEEEEEETTEEE----EEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE
T ss_pred CCeEEEEECCCCcee----eeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc
Confidence 999999999775432 34667889999999999987789999999999999998864211
Q ss_pred -------eEEecCCCCEEEEEEc-CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEE------------
Q 039302 318 -------MSFKAHNADVNVISWN-RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI------------ 377 (479)
Q Consensus 318 -------~~~~~h~~~v~~l~~~-p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v------------ 377 (479)
....+|...+.++.|. +++ ..|++++.|+++++||++... ....+..|...+..+
T Consensus 241 ~~~~~~~~~~~~~~~~v~~v~~~~~dg-~~l~s~s~d~~i~vwd~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (393)
T 4gq1_A 241 TLPLVNTCHSSGIASSLANVRWIGSDG-SGILAMCKSGAWLRWNLFANN----DYNEISDSTMKLGPKNLLPNVQGISLF 315 (393)
T ss_dssp SGGGC------CCSSSCSEEEEETTTT-CEEEEECTTSEEEEEEC-----------------------CCSCSEEEECSS
T ss_pred cccceeeeecccccccceeeeeecCCC-CEEEEEeCCCCEEEEECccCC----CCceEeeecCccccEEEcccccccccc
Confidence 1124577788999987 566 899999999999999998766 344444444333333
Q ss_pred ------EEeC-CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 378 ------EWSP-HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 378 ------~~sp-~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
.|+| .++.++++|+.||+|+|||+..... +.....++..|.+++|||++
T Consensus 316 ~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~------------------------~~~~~~~~~~V~svafspdG 371 (393)
T 4gq1_A 316 PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS------------------------NSIPIQLGMPIVDFCWHQDG 371 (393)
T ss_dssp CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC------------------------CEEEEECSSCEEEEEECTTS
T ss_pred CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE------------------------EEEecCCCCcEEEEEEcCCC
Confidence 3333 3434677888899999999987642 22223334689999999999
Q ss_pred CcEEEEEcCCCceEEeeeccCC
Q 039302 451 PGMIVSTAADGFNILMPSNIQS 472 (479)
Q Consensus 451 ~~ll~s~~~dgi~iw~~~~~~~ 472 (479)
. +||+++++|+.+|++....+
T Consensus 372 ~-~LA~as~~Gv~lvrL~gf~~ 392 (393)
T 4gq1_A 372 S-HLAIATEGSVLLTRLMGFTR 392 (393)
T ss_dssp S-EEEEEESSEEEEEEEGGGCC
T ss_pred C-EEEEEeCCCeEEEEEeCccc
Confidence 6 78889999999999876643
No 81
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.1e-30 Score=262.51 Aligned_cols=227 Identities=21% Similarity=0.335 Sum_probs=191.1
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
..+.+|.+.|++++|+|++..+|++|+.||.|+||++........ ...+...+.+|...|.+++|+
T Consensus 175 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~--------------~~~~~~~~~~h~~~v~~v~~~ 240 (430)
T 2xyi_A 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR--------------VIDAKNIFTGHTAVVEDVAWH 240 (430)
T ss_dssp EEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG--------------EEECSEEECCCSSCEEEEEEC
T ss_pred EEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc--------------eeccceeecCCCCCEeeeEEe
Confidence 467799999999999999966999999999999999987311100 123456788999999999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
|.+..+|++|+.||.|++||+++..... ....+..|...|++++|+|++.++|++|+.||.|++||++....++..+..
T Consensus 241 p~~~~~l~s~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~ 319 (430)
T 2xyi_A 241 LLHESLFGSVADDQKLMIWDTRNNNTSK-PSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFES 319 (430)
T ss_dssp SSCTTEEEEEETTSEEEEEETTCSCSSS-CSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEC
T ss_pred CCCCCEEEEEeCCCeEEEEECCCCCCCc-ceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeec
Confidence 9655599999999999999998753211 123456899999999999999878999999999999999986667888899
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------CceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG----------DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~----------~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
|...|++++|+|++..+|++|+.||.|+|||++..... ...+..+.+|...|++++|+|++..+|++++.
T Consensus 320 h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC
Confidence 99999999999999789999999999999999873311 13778888999999999999977559999999
Q ss_pred CCcEEEEECCCC
Q 039302 393 DNQLTIWDLSLE 404 (479)
Q Consensus 393 Dg~I~iwdl~~~ 404 (479)
||.|+||++...
T Consensus 400 dg~i~iw~~~~~ 411 (430)
T 2xyi_A 400 DNIMQVWQMAEN 411 (430)
T ss_dssp TSEEEEEEECHH
T ss_pred CCCEEEeEcccc
Confidence 999999999753
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.8e-31 Score=264.42 Aligned_cols=259 Identities=17% Similarity=0.202 Sum_probs=205.0
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+...+.+|.+.|++++|+| .+|++|+.||.|+||++....... ....+..+.+|...|.+++
T Consensus 8 ~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~~~~~~~~---------------~~~~~~~~~~h~~~v~~~~ 69 (397)
T 1sq9_A 8 TANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDNKLLDNEN---------------PKDKSYSHFVHKSGLHHVD 69 (397)
T ss_dssp EEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEESBCCTTCC---------------GGGGEEEEECCTTCEEEEE
T ss_pred hhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEECCCccccc---------------CCCcceEEecCCCcEEEEE
Confidence 3445679999999999998 588999999999999998721100 1236778889999999999
Q ss_pred eCCC----C---CCeEEEEeCCCeEEEEecCCCCccc-cCCCCcccC-----CCcEEEEEEC----CCCCcE-EEEEeCC
Q 039302 241 WNPV----A---PGRLVSGDCNSCIHLWEPASDATWN-VDPNPFIGH-----AASVEDLQWS----PTESDV-FASCSVD 302 (479)
Q Consensus 241 ~s~~----~---~~~l~sg~~dg~I~lwd~~~~~~~~-~~~~~~~~h-----~~~V~~l~~s----p~~~~~-l~s~s~d 302 (479)
|+|+ + . +|++|+.||.|++|++.+..... .....+..| ...|.+++|+ |++. + |++++.|
T Consensus 70 ~~~~~~~~g~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~d 147 (397)
T 1sq9_A 70 VLQAIERDAFELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVK 147 (397)
T ss_dssp EEEEEETTTEEEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETT
T ss_pred EecccccCCcccc-EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCC
Confidence 9999 7 7 99999999999999998755310 001335566 5899999999 9988 7 9999999
Q ss_pred CcEEEEEcCC------CCceee-----EE-------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE
Q 039302 303 GNIAIWDTRV------GKSALM-----SF-------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVV 364 (479)
Q Consensus 303 g~I~iwD~~~------~~~~~~-----~~-------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~ 364 (479)
|.|++||++. .. .+. .+ ..|...|.+++|+|++ +|++|+.||.|++||+++.. ++
T Consensus 148 g~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~----~~ 220 (397)
T 1sq9_A 148 GTTYIWKFHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLR----PL 220 (397)
T ss_dssp SCEEEEEEESSSSHHHHT-TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTE----EE
T ss_pred CcEEEEeCCccccccccc-eeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCc----ee
Confidence 9999999998 43 333 55 4488999999999988 99999999999999999877 78
Q ss_pred EEeec---C---CCCeEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe-
Q 039302 365 AHFEY---H---KHPVTSIEWSPHEGSTLAVSSAD---NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI- 434 (479)
Q Consensus 365 ~~~~~---h---~~~I~~v~~sp~~~~~las~s~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~- 434 (479)
..+.. | ..+|++++|+|++ .+|++++.| +.|++||++..... ..+..
T Consensus 221 ~~~~~~~~h~~~~~~i~~i~~~~~~-~~l~~~~~d~~~g~i~i~d~~~~~~~----------------------~~~~~~ 277 (397)
T 1sq9_A 221 YNFESQHSMINNSNSIRSVKFSPQG-SLLAIAHDSNSFGCITLYETEFGERI----------------------GSLSVP 277 (397)
T ss_dssp EEEECCC---CCCCCEEEEEECSST-TEEEEEEEETTEEEEEEEETTTCCEE----------------------EEECBC
T ss_pred EEEeccccccccCCccceEEECCCC-CEEEEEecCCCCceEEEEECCCCccc----------------------ceeccC
Confidence 89998 9 9999999999965 999999999 99999999876311 11111
Q ss_pred ----------ecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 435 ----------HQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 435 ----------h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..+...|.+++|+|++. +|++++.|+ |++|++.+.
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDSGE-TLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp --------CCBSBSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTT
T ss_pred cccccccccccccCCcEEEEEECCCCC-EEEEEeCCCeEEEEEcCCC
Confidence 00235799999999986 777777777 999998543
No 83
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-30 Score=259.64 Aligned_cols=250 Identities=21% Similarity=0.312 Sum_probs=204.4
Q ss_pred CceeEEEEecCCcce--eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCC
Q 039302 158 TPILQLRKVAHQGCV--NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKD 234 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V--~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~ 234 (479)
.|.......+|...+ +++.|++ .. +++++.||.|+|||+.. ......+.. |..
T Consensus 80 ~p~~~~~~~~~~~~~~~~~~~~s~--~~-l~~~~~d~~v~lw~~~~---------------------~~~~~~~~~~~~~ 135 (401)
T 4aez_A 80 TPERVLDAPGIIDDYYLNLLDWSN--LN-VVAVALERNVYVWNADS---------------------GSVSALAETDEST 135 (401)
T ss_dssp SCSEEEECTTCCCCTTCBCEEECT--TS-EEEEEETTEEEEEETTT---------------------CCEEEEEECCTTC
T ss_pred CcceeeeCCCCcCCceEEEEeecC--CC-EEEEECCCeEEEeeCCC---------------------CcEeEeeecCCCC
Confidence 444545556777664 4566665 23 45668999999999987 444445544 788
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.|.+++|+|++. +|++|+.||.|++||+.++... ..+.+|...|.+++|+ +. +|++|+.||.|++||++...
T Consensus 136 ~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~ 207 (401)
T 4aez_A 136 YVASVKWSHDGS-FLSVGLGNGLVDIYDVESQTKL----RTMAGHQARVGCLSWN--RH-VLSSGSRSGAIHHHDVRIAN 207 (401)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEE----EEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSS
T ss_pred CEEEEEECCCCC-EEEEECCCCeEEEEECcCCeEE----EEecCCCCceEEEEEC--CC-EEEEEcCCCCEEEEecccCc
Confidence 999999999997 9999999999999999876542 3466899999999995 34 99999999999999999766
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe--C
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS--A 392 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s--~ 392 (479)
..+..+..|...|.+++|+|++ .+|++|+.||.|++||+++.. ++..+..|...|++++|+|++..++++++ .
T Consensus 208 ~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~----~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~ 282 (401)
T 4aez_A 208 HQIGTLQGHSSEVCGLAWRSDG-LQLASGGNDNVVQIWDARSSI----PKFTKTNHNAAVKAVAWCPWQSNLLATGGGTM 282 (401)
T ss_dssp CEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCSS----EEEEECCCSSCCCEEEECTTSTTEEEEECCTT
T ss_pred ceeeEEcCCCCCeeEEEEcCCC-CEEEEEeCCCeEEEccCCCCC----ccEEecCCcceEEEEEECCCCCCEEEEecCCC
Confidence 6778889999999999999988 899999999999999999877 78889999999999999998878888876 7
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc-CCC-ceEEeeec
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA-ADG-FNILMPSN 469 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~-~dg-i~iw~~~~ 469 (479)
|+.|++||+.... .+....++..|.+++|+|++..++++++ .+| |.+|++.+
T Consensus 283 d~~i~i~d~~~~~-------------------------~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~ 336 (401)
T 4aez_A 283 DKQIHFWNAATGA-------------------------RVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSS 336 (401)
T ss_dssp TCEEEEEETTTCC-------------------------EEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEET
T ss_pred CCEEEEEECCCCC-------------------------EEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCC
Confidence 9999999998763 2233334467999999999975555533 566 99999876
No 84
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=4e-31 Score=286.49 Aligned_cols=249 Identities=17% Similarity=0.256 Sum_probs=213.4
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|++++|+|++ .+||+++.+|.|+|||+.. +..+..+.+|...|.+++|
T Consensus 6 ~~~~~~h~~~v~~i~~sp~~-~~la~~~~~g~v~iwd~~~---------------------~~~~~~~~~~~~~v~~~~~ 63 (814)
T 3mkq_A 6 KKTFSNRSDRVKGIDFHPTE-PWVLTTLYSGRVEIWNYET---------------------QVEVRSIQVTETPVRAGKF 63 (814)
T ss_dssp EEEEEEECSCEEEEEECSSS-SEEEEEETTSEEEEEETTT---------------------TEEEEEEECCSSCEEEEEE
T ss_pred ceeeecCCCceEEEEECCCC-CEEEEEeCCCEEEEEECCC---------------------CceEEEEecCCCcEEEEEE
Confidence 35778999999999999999 7888999999999999987 5677888899999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
+|++. +|++|+.||.|++||+.++... ..+.+|...|.+++|+|+++ +|++++.||.|++||++++......+.
T Consensus 64 s~~~~-~l~~~~~dg~i~vw~~~~~~~~----~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~ 137 (814)
T 3mkq_A 64 IARKN-WIIVGSDDFRIRVFNYNTGEKV----VDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFE 137 (814)
T ss_dssp EGGGT-EEEEEETTSEEEEEETTTCCEE----EEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEE
T ss_pred eCCCC-EEEEEeCCCeEEEEECCCCcEE----EEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEc
Confidence 99998 9999999999999999876542 34678999999999999998 899999999999999998755677788
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeC--CCCCEEEEEeCCCcEEE
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSP--HEGSTLAVSSADNQLTI 398 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp--~~~~~las~s~Dg~I~i 398 (479)
.|...|.+++|+|.++.+|++|+.||.|++||++... ....+.. |...|++++|+| ++ .+|++++.|+.|++
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~~ 212 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST----PNFTLTTGQERGVNYVDYYPLPDK-PYMITASDDLTIKI 212 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS----CSEEEECCCTTCCCEEEECCSTTC-CEEEEECTTSEEEE
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc----ceeEEecCCCCCEEEEEEEECCCC-CEEEEEeCCCEEEE
Confidence 9999999999999433899999999999999998877 4555554 448999999999 54 89999999999999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
||+.... .+....+ ...|.+++|+|+++ ++++++.|| |++|++.+
T Consensus 213 ~d~~~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 213 WDYQTKS-------------------------CVATLEGHMSNVSFAVFHPTLP-IIISGSEDGTLKIWNSST 259 (814)
T ss_dssp EETTTTE-------------------------EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTT
T ss_pred EECCCCc-------------------------EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEECCC
Confidence 9998763 2222222 35799999999996 777777777 99998765
No 85
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-30 Score=259.78 Aligned_cols=264 Identities=17% Similarity=0.218 Sum_probs=200.3
Q ss_pred eEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeC----CCCccccc--ccccccCCCCCccccCCCcEEecCCCC
Q 039302 161 LQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDF----RSHLNALA--ESETVAGHGAPQVLNQSPLVKFGGHKD 234 (479)
Q Consensus 161 ~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~ 234 (479)
.......|.+.|++++|+|++..+||+|+.||.|+||++ ........ ....... .........+|..
T Consensus 37 ~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 37 KILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH-------PFALSASSGKTTN 109 (425)
T ss_dssp EECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC-------CCCCC------CB
T ss_pred hheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc-------cccccccccCCCC
Confidence 334566778999999999999549999999999999999 55210000 0000000 0000111223788
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.|++++|+|++. +|++|+.||.|++|+. ++.. ...+.+|...|.+++|+|++. +|++++.||.|++||+++++
T Consensus 110 ~v~~~~~s~~~~-~l~~~~~dg~i~i~~~-~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 110 QVTCLAWSHDGN-SIVTGVENGELRLWNK-TGAL----LNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGT 182 (425)
T ss_dssp CEEEEEECTTSS-EEEEEETTSCEEEEET-TSCE----EEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTE
T ss_pred ceEEEEEcCCCC-EEEEEeCCCeEEEEeC-CCCe----eeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCc
Confidence 999999999998 9999999999999994 3222 244678999999999999998 99999999999999997653
Q ss_pred c-------------------------------------------------------eeeEEecCCCCEEEEEEcCCCCcE
Q 039302 315 S-------------------------------------------------------ALMSFKAHNADVNVISWNRLASCL 339 (479)
Q Consensus 315 ~-------------------------------------------------------~~~~~~~h~~~v~~l~~~p~~~~~ 339 (479)
. ++..+..|...|.+++|+|++ .+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~~ 261 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN-KL 261 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT-TE
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC-CE
Confidence 1 112344678899999999998 89
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccc
Q 039302 340 LASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTRE 419 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~ 419 (479)
|++++.||.|++||+++.. ++..+..|...|++++|+|++ +|++++.|+.|++||+....
T Consensus 262 l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~-------------- 321 (425)
T 1r5m_A 262 LLSASDDGTLRIWHGGNGN----SQNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNT-------------- 321 (425)
T ss_dssp EEEEETTSCEEEECSSSBS----CSEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTE--------------
T ss_pred EEEEcCCCEEEEEECCCCc----cceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCc--------------
Confidence 9999999999999999887 788889999999999999954 99999999999999998763
Q ss_pred ccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 420 QVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 420 ~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
.+....+ ...|.+++|+|++. +|++++.+| |.+|++.+..
T Consensus 322 -----------~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 322 -----------LLALSIVDGVPIFAGRISQDGQ-KYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp -----------EEEEEECTTCCEEEEEECTTSS-EEEEEETTSCEEEEECHHHH
T ss_pred -----------EeEecccCCccEEEEEEcCCCC-EEEEEECCCeEEEEECCCCc
Confidence 2222222 35799999999986 666777776 9999987543
No 86
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.6e-31 Score=257.76 Aligned_cols=253 Identities=16% Similarity=0.268 Sum_probs=195.2
Q ss_pred EEEecCCcceeEEEEecCC--CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCc-EEecCCCCceEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQN--PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL-VKFGGHKDEGYAI 239 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~--~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l 239 (479)
..+.+|.+.|++++|+|++ ..+|++|+.||.|+|||+... ...+ ..+.+|...|.++
T Consensus 33 ~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~--------------------~~~~~~~~~~h~~~v~~~ 92 (368)
T 3mmy_A 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS--------------------GQTIPKAQQMHTGPVLDV 92 (368)
T ss_dssp ECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT--------------------SCEEEEEEEECSSCEEEE
T ss_pred EeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC--------------------CceeEEEeccccCCEEEE
Confidence 3567999999999999994 489999999999999999861 2333 6788899999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE--CCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW--SPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+|+|++. +|++|+.||.|++||+.++.. ..+.+|...|.+++| +|++. +|++++.||.|++||+++.+ ++
T Consensus 93 ~~~~~~~-~l~s~~~dg~v~iwd~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~-~~ 164 (368)
T 3mmy_A 93 CWSDDGS-KVFTASCDKTAKMWDLSSNQA-----IQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSN-PM 164 (368)
T ss_dssp EECTTSS-EEEEEETTSEEEEEETTTTEE-----EEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSS-CS
T ss_pred EECcCCC-EEEEEcCCCcEEEEEcCCCCc-----eeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCc-EE
Confidence 9999998 999999999999999987543 235679999999999 88887 89999999999999999875 44
Q ss_pred eEEecCC-----------------------------------------CCEEEEEEcCCC---CcEEEEEeCCCeEEEEe
Q 039302 318 MSFKAHN-----------------------------------------ADVNVISWNRLA---SCLLASGSDDGTFSIHD 353 (479)
Q Consensus 318 ~~~~~h~-----------------------------------------~~v~~l~~~p~~---~~~l~sgs~dg~i~iwD 353 (479)
..+..+. ..+.++++.+.. +..+++|+.||.|++||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 165 MVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp EEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred EEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 4443322 233444443332 12399999999999999
Q ss_pred CCCCCCCCceEEEeecCCC------------CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccccc
Q 039302 354 LRLLKGGDSVVAHFEYHKH------------PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQV 421 (479)
Q Consensus 354 lr~~~~~~~~~~~~~~h~~------------~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 421 (479)
++.... ...+..+..|.. +|++++|+|++ .+|++++.||.|++||+....
T Consensus 245 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~s~~~dg~i~iwd~~~~~---------------- 306 (368)
T 3mmy_A 245 INPPNP-AKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH-GTLATVGSDGRFSFWDKDART---------------- 306 (368)
T ss_dssp SSCSCH-HHHSEEEECSEEC----CCCEEECCEEEEEECTTT-CCEEEEETTSCEEEEETTTTE----------------
T ss_pred cCCCCc-cccceeeeeeecccccccccccccceEEEEEecCC-CEEEEEccCCeEEEEECCCCc----------------
Confidence 988731 125677777776 79999999965 899999999999999998763
Q ss_pred CCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 422 NAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 422 ~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
++....+ ...|++++|+|++..++++++++..+.|++++.
T Consensus 307 ---------~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 307 ---------KLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp ---------EEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred ---------EEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCC
Confidence 2222223 357999999999975544444443555555443
No 87
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-31 Score=267.61 Aligned_cols=271 Identities=13% Similarity=0.149 Sum_probs=191.2
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--C--CCCceEEEE-
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--G--HKDEGYAID- 240 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--h~~~v~~l~- 240 (479)
.+|.+.|++++|+|++ .+|++|+.||.|+|||+........ .. ......+..+. . +...+.++.
T Consensus 108 ~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~-~~---------~~~~~~i~~~~~~~~~~~~~~~~~~~ 176 (437)
T 3gre_A 108 YDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESE-VK---------FLNCECIRKINLKNFGKNEYAVRMRA 176 (437)
T ss_dssp EECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTE-EE---------EEEEEEEEEEEGGGGSSCCCEEEEEE
T ss_pred ccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCce-ee---------ccccceeEEEEccCcccccCceEEEE
Confidence 3699999999999988 7889999999999999953100000 00 00011122221 1 455677777
Q ss_pred -eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc--CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 241 -WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG--HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 241 -~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++++. +|++|+.||.|++||+.++... ..+.+ |...|++++|+|++. +|++|+.||.|++||++++. ++
T Consensus 177 ~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~-~~ 249 (437)
T 3gre_A 177 FVNEEKS-LLVALTNLSRVIIFDIRTLERL----QIIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRFNV-LI 249 (437)
T ss_dssp EECSSCE-EEEEEETTSEEEEEETTTCCEE----EEEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTTTE-EE
T ss_pred EEcCCCC-EEEEEeCCCeEEEEeCCCCeee----EEEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCCcc-EE
Confidence 557776 9999999999999999876542 33455 889999999999988 99999999999999999874 66
Q ss_pred eEEe-cCCCCEEEEEEcC----CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-----------------------
Q 039302 318 MSFK-AHNADVNVISWNR----LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----------------------- 369 (479)
Q Consensus 318 ~~~~-~h~~~v~~l~~~p----~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----------------------- 369 (479)
..+. .|...|++++|+| ++ .+|++|+.||.|++||++++. .+..+.+
T Consensus 250 ~~~~~~~~~~v~~~~~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 324 (437)
T 3gre_A 250 RSWSFGDHAPITHVEVCQFYGKNS-VIVVGGSSKTFLTIWNFVKGH----CQYAFINSDEQPSMEHFLPIEKGLEELNFC 324 (437)
T ss_dssp EEEBCTTCEEEEEEEECTTTCTTE-EEEEEESTTEEEEEEETTTTE----EEEEEESSSSCCCGGGGSCBCSSGGGCCCC
T ss_pred EEEecCCCCceEEEEeccccCCCc-cEEEEEcCCCcEEEEEcCCCc----EEEEEEcCCCCCccceecccccccccceec
Confidence 6664 7888999997765 44 799999999999999999877 5665553
Q ss_pred ---CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccccc------------------CCCCCCC
Q 039302 370 ---HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQV------------------NAPEDLP 428 (479)
Q Consensus 370 ---h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~------------------~~~~~~p 428 (479)
|...|++++|++ + .+|++|+.|+.|++||+........ +.++..... .......
T Consensus 325 ~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (437)
T 3gre_A 325 GIRSLNALSTISVSN-D-KILLTDEATSSIVMFSLNELSSSKA---VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHS 399 (437)
T ss_dssp CCCSGGGGCCEEEET-T-EEEEEEGGGTEEEEEETTCGGGCEE---EECC--CCCEEEEEEEETTEEEEEEECC------
T ss_pred ccccCCceEEEEECC-c-eEEEecCCCCeEEEEECCCcccceE---EecccccCceEEEEEeecceEEEEEecccccccc
Confidence 556688899993 4 8999999999999999987642100 000000000 0000000
Q ss_pred CceEEeecCCCCeeeEEEeCC-CCcEEEEEcCCC-ceEEe
Q 039302 429 PQLLFIHQGQKDLKELHWHTQ-VPGMIVSTAADG-FNILM 466 (479)
Q Consensus 429 ~~l~~~h~g~~~V~~v~w~p~-~~~ll~s~~~dg-i~iw~ 466 (479)
......| ...|++++|++. ...+|++++.|| |+||+
T Consensus 400 ~~~~~~h--~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 400 VDDSLYH--HDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cCccccc--ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 0011112 357999999998 335899999999 99995
No 88
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=6.3e-30 Score=253.49 Aligned_cols=211 Identities=19% Similarity=0.317 Sum_probs=179.1
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
+|.+.|++++|+|++..+|++++.||.|++||+.. .+.+..+. +...+.++.|++.+.
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------------------~~~~~~~~-~~~~~~~~~~~~~~~ 154 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNT---------------------LQTADVFN-FEETVYSHHMSPVST 154 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTT---------------------TEEEEEEE-CSSCEEEEEECSSCS
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCC---------------------Cccceecc-CCCceeeeEeecCCC
Confidence 59999999999996668999999999999999987 44555554 677899999998653
Q ss_pred C--eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE----
Q 039302 247 G--RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF---- 320 (479)
Q Consensus 247 ~--~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~---- 320 (479)
. +|++|+.+|.|++||+.++.. ...+.+|...|.+++|+|++..+|++|+.||.|++||++....++..+
T Consensus 155 ~~~~~~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 230 (408)
T 4a11_B 155 KHCLVAVGTRGPKVQLCDLKSGSC----SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHN 230 (408)
T ss_dssp SCCEEEEEESSSSEEEEESSSSCC----CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTT
T ss_pred CCcEEEEEcCCCeEEEEeCCCcce----eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccc
Confidence 3 899999999999999987544 245678999999999999998779999999999999999876444444
Q ss_pred -----------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC------------------------------
Q 039302 321 -----------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG------------------------------ 359 (479)
Q Consensus 321 -----------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~------------------------------ 359 (479)
..|...|++++|+|++ .+|++|+.||.|++||+++...
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (408)
T 4a11_B 231 GKKSQAVESANTAHNGKVNGLCFTSDG-LHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVF 309 (408)
T ss_dssp TCSCCCTTTSSCSCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEE
T ss_pred cccceeeccccccccCceeEEEEcCCC-CEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEE
Confidence 5788999999999998 8999999999999999987541
Q ss_pred -------------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 360 -------------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 360 -------------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
...++..+.+|...|++++|+|++ .+|++++.||.|++||+....
T Consensus 310 ~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 310 VPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNF-QELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTT-TEEEEEETTSCEEEEEECC--
T ss_pred EecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCC-CEEEEECCCCeEEEEeCCCCC
Confidence 124577788899999999999965 999999999999999999874
No 89
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3e-29 Score=253.49 Aligned_cols=250 Identities=16% Similarity=0.122 Sum_probs=198.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCC--CCcccccccccccCCCCCccccCCCcEEec--CCCCceEEEE
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFR--SHLNALAESETVAGHGAPQVLNQSPLVKFG--GHKDEGYAID 240 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~ 240 (479)
..+|.+.|++++|+|++..++|+|+.||.|+|||+. . ...+..+. .|...|.+++
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~---------------------~~~~~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS---------------------KNVLKLRKRFCFSKRPNAIS 156 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS---------------------SSCEEEEEEEECSSCEEEEE
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC---------------------CceeeeeecccCCCCceEEE
Confidence 347888999999999996667999999999999998 4 45556665 5678999999
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC---CCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT---ESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
|+|++. +|++|+.+|.|++|++.+..........+.+|...|++++|+|+ +. +|++|+.|++|++||++++. .+
T Consensus 157 ~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~-~~ 233 (450)
T 2vdu_B 157 IAEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCF-IV 233 (450)
T ss_dssp ECTTSS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTT-CE
T ss_pred EcCCCC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCc-ee
Confidence 999998 99999999999999997755422123467889999999999999 76 99999999999999999876 44
Q ss_pred eE-EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-------------------------CC
Q 039302 318 MS-FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-------------------------HK 371 (479)
Q Consensus 318 ~~-~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-------------------------h~ 371 (479)
.. +.+|...|++++|+ ++ .+|++|+.|+.|++||+++++ ++..+.. +.
T Consensus 234 ~~~~~~h~~~v~~~~~s-d~-~~l~s~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 234 DKWLFGHKHFVSSICCG-KD-YLLLSAGGDDKIFAWDWKTGK----NLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp EEECCCCSSCEEEEEEC-ST-TEEEEEESSSEEEEEETTTCC----EEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred eeeecCCCCceEEEEEC-CC-CEEEEEeCCCeEEEEECCCCc----Eeeeecchhhhhhhhhhcccccccccccccccce
Confidence 44 56899999999999 77 899999999999999999887 6666652 24
Q ss_pred CCeEEEEEeCCCCCEEEEEe-CCCcEEEEEC--CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeC
Q 039302 372 HPVTSIEWSPHEGSTLAVSS-ADNQLTIWDL--SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHT 448 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s-~Dg~I~iwdl--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p 448 (479)
..|.+++|+|++ .+|++++ .|+.|+||++ ..... ...+....++..|.+++|+|
T Consensus 308 ~~v~~i~~~~~~-~~l~~~~~~d~~i~iw~~~~~~~~~----------------------l~~~~~~~~~~~v~~~~~~~ 364 (450)
T 2vdu_B 308 FAVSKIIKSKNL-PFVAFFVEATKCIIILEMSEKQKGD----------------------LALKQIITFPYNVISLSAHN 364 (450)
T ss_dssp CCEEEEEECSSS-SEEEEEETTCSEEEEEEECSSSTTC----------------------EEEEEEEECSSCEEEEEEET
T ss_pred EEEEEEEEeCCC-CEEEEEECCCCeEEEEEeccCCCCc----------------------eeeccEeccCCceEEEEecC
Confidence 579999999965 8888888 8999999999 32210 12233333446799999999
Q ss_pred CCCcEEEEEcC-------CC-ceEEeeec
Q 039302 449 QVPGMIVSTAA-------DG-FNILMPSN 469 (479)
Q Consensus 449 ~~~~ll~s~~~-------dg-i~iw~~~~ 469 (479)
+ .++++++. +. |.+|.+..
T Consensus 365 ~--~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 365 D--EFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp T--EEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred C--cEEEEEecccCCCCCCcceEEEEEEc
Confidence 5 35555433 22 78887653
No 90
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.98 E-value=3e-31 Score=259.07 Aligned_cols=264 Identities=14% Similarity=0.238 Sum_probs=200.9
Q ss_pred EEecCCcceeEEEEecC---CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-----CCCCc
Q 039302 164 RKVAHQGCVNRIRAMSQ---NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-----GHKDE 235 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~---~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~ 235 (479)
...+|.+.|++++|+|. +..++++++.++.|+|||+.. ...+..+. .|...
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~---------------------~~~~~~~~~~~~~~~~~~ 71 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS---------------------QGEIRLLQSYVDADADEN 71 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG---------------------GGCEEEEEEEECSCTTCC
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCC---------------------CcEEEeeeeccccCCCCc
Confidence 45589999999999984 434555556667999999986 22333333 26678
Q ss_pred eEEEEeCCCCC---CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC-CCCcEEEEEeCCCcEEEEEcC
Q 039302 236 GYAIDWNPVAP---GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP-TESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 236 v~~l~~s~~~~---~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~dg~I~iwD~~ 311 (479)
|++++|+|++. .+|++|+.||.|++||+.++... ..+.+|...|.+++|+| ++. +|++|+.||.|++||++
T Consensus 72 v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~----~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 72 FYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCI----KHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEE----EEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETT
T ss_pred EEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEe----eeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEee
Confidence 99999999932 28999999999999999875442 34678999999999999 565 99999999999999999
Q ss_pred CCCceeeEE---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC------------------------CceE
Q 039302 312 VGKSALMSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG------------------------DSVV 364 (479)
Q Consensus 312 ~~~~~~~~~---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~------------------------~~~~ 364 (479)
+++ .+..+ ..|...|.+++|+|++ .+|++|+.||.|++||+++.... ....
T Consensus 147 ~~~-~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (366)
T 3k26_A 147 TDT-LVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDF 224 (366)
T ss_dssp TTE-EEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSE
T ss_pred cCe-EEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcc
Confidence 875 55566 6899999999999988 89999999999999999976410 0112
Q ss_pred EEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeee
Q 039302 365 AHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKE 443 (479)
Q Consensus 365 ~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~ 443 (479)
.....|...|++++|+ +.+|++++.|+.|++||+........ ..........++....++ ..|++
T Consensus 225 ~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~v~~ 290 (366)
T 3k26_A 225 STRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDID-----------KIKPSESNVTILGRFDYSQCDIWY 290 (366)
T ss_dssp EECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGG-----------GCCTTCCCEEEEEEEECSSCCSSC
T ss_pred ccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCcccccc-----------ccccCCcchheeccccccCCcEEE
Confidence 3344599999999999 37999999999999999987643211 000111111233333333 46999
Q ss_pred EEEeCC--CCcEEEEEcCCC-ceEEeeecc
Q 039302 444 LHWHTQ--VPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 444 v~w~p~--~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++|+|+ +. +|++++.+| |++|++...
T Consensus 291 ~~~s~~~~~~-~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 291 MRFSMDFWQK-MLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp CCCEECTTSS-EEEEECTTSCEEEEECCSS
T ss_pred EEEcCCCCCc-EEEEEecCCcEEEEECCCC
Confidence 999999 74 788888887 999998764
No 91
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.98 E-value=5.9e-31 Score=264.55 Aligned_cols=280 Identities=12% Similarity=0.186 Sum_probs=202.1
Q ss_pred eEEEE-ecCCcceeEEEEec-CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 161 LQLRK-VAHQGCVNRIRAMS-QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 161 ~~~~~-~~H~~~V~~v~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
+...+ .+|.+.|++++|+| ++ .+||+|+.||+|+|||+....... ...+...+ +|...|++
T Consensus 54 ~~~~~~~~h~~~V~~~~~s~~~~-~~l~s~s~dg~v~vwd~~~~~~~~---------------~~~~~~~~-~h~~~v~~ 116 (437)
T 3gre_A 54 LIATLMENEPNSITSSAVSPGET-PYLITGSDQGVIKIWNLKEIIVGE---------------VYSSSLTY-DCSSTVTQ 116 (437)
T ss_dssp EEEEECTTTTSCEEEEEEECSSS-CEEEEEETTSEEEEEEHHHHHTTC---------------CCSCSEEE-ECSSCEEE
T ss_pred EEeeeccCCCCceEEEEECCCCC-CEEEEecCCceEEEeECcccccCc---------------ccceeeec-cCCCCEEE
Confidence 33455 78999999999999 77 799999999999999986521100 12334444 48999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecC---CCCcccc------CCCCccc--CCCcEEEEE--ECCCCCcEEEEEeCCCcE
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPA---SDATWNV------DPNPFIG--HAASVEDLQ--WSPTESDVFASCSVDGNI 305 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~---~~~~~~~------~~~~~~~--h~~~V~~l~--~sp~~~~~l~s~s~dg~I 305 (479)
++|+|++. +|++|+.||.|++||+. .+..... ....+.. +...+.++. +++++. +|++|+.||.|
T Consensus 117 ~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i 194 (437)
T 3gre_A 117 ITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRV 194 (437)
T ss_dssp EEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEE
T ss_pred EEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeE
Confidence 99999887 99999999999999995 3221110 0001111 556677777 567777 99999999999
Q ss_pred EEEEcCCCCceeeEEec--CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCC
Q 039302 306 AIWDTRVGKSALMSFKA--HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPH 382 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~--h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~ 382 (479)
++||+++.+ ++..+.. |...|++++|+|++ .+|++|+.||.|++||+++.. ++..+. .|..+|++++|+|.
T Consensus 195 ~iwd~~~~~-~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~ 268 (437)
T 3gre_A 195 IIFDIRTLE-RLQIIENSPRHGAVSSICIDEEC-CVLILGTTRGIIDIWDIRFNV----LIRSWSFGDHAPITHVEVCQF 268 (437)
T ss_dssp EEEETTTCC-EEEEEECCGGGCCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE----EEEEEBCTTCEEEEEEEECTT
T ss_pred EEEeCCCCe-eeEEEccCCCCCceEEEEECCCC-CEEEEEcCCCeEEEEEcCCcc----EEEEEecCCCCceEEEEeccc
Confidence 999999986 6777776 89999999999998 999999999999999999876 788776 78889999988773
Q ss_pred ---CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccc-----ccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEE
Q 039302 383 ---EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTRE-----QVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMI 454 (479)
Q Consensus 383 ---~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~-----~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll 454 (479)
++.+|++|+.|+.|++||++....... +...... .......+....+....+...|++++|+ .+ .+|
T Consensus 269 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~-~~l 343 (437)
T 3gre_A 269 YGKNSVIVVGGSSKTFLTIWNFVKGHCQYA---FINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-ND-KIL 343 (437)
T ss_dssp TCTTEEEEEEESTTEEEEEEETTTTEEEEE---EESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TT-EEE
T ss_pred cCCCccEEEEEcCCCcEEEEEcCCCcEEEE---EEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cc-eEE
Confidence 346999999999999999987642100 0000000 0000000000001110122469999999 44 588
Q ss_pred EEEcCCC-ceEEeeecc
Q 039302 455 VSTAADG-FNILMPSNI 470 (479)
Q Consensus 455 ~s~~~dg-i~iw~~~~~ 470 (479)
++++.|+ |++|++.+.
T Consensus 344 ~s~~~d~~i~~wd~~~~ 360 (437)
T 3gre_A 344 LTDEATSSIVMFSLNEL 360 (437)
T ss_dssp EEEGGGTEEEEEETTCG
T ss_pred EecCCCCeEEEEECCCc
Confidence 8888888 999998654
No 92
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.98 E-value=1.6e-29 Score=244.92 Aligned_cols=236 Identities=12% Similarity=0.119 Sum_probs=192.6
Q ss_pred EEEecCCcceeEEEEecCCCc-EEEEEeCCceEEEEeC-CCCcccccccccccCCCCCccccCCCcEEecC--CCCceEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPH-ICASWADTGHVQVWDF-RSHLNALAESETVAGHGAPQVLNQSPLVKFGG--HKDEGYA 238 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~-~lat~s~dg~V~iwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~ 238 (479)
....+|.+.|++++|+|++ . +|++|+.||.|++||+ .. . ....+.+ |...|.+
T Consensus 50 ~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~~wd~~~~---------------------~-~~~~~~~~~~~~~v~~ 106 (342)
T 1yfq_A 50 LQSLRYKHPLLCCNFIDNT-DLQIYVGTVQGEILKVDLIGS---------------------P-SFQALTNNEANLGICR 106 (342)
T ss_dssp EEEEECSSCEEEEEEEESS-SEEEEEEETTSCEEEECSSSS---------------------S-SEEECBSCCCCSCEEE
T ss_pred eeeeecCCceEEEEECCCC-CcEEEEEcCCCeEEEEEeccC---------------------C-ceEeccccCCCCceEE
Confidence 4566999999999999998 6 8889999999999999 65 2 3367778 9999999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCC---------CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPAS---------DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~---------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
++|+| +. +|++|+.||.|++||+.+ ... ...+. |...|.+++|+|++ +++++.|+.|++||
T Consensus 107 l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d 176 (342)
T 1yfq_A 107 ICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVKNLN----SNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFR 176 (342)
T ss_dssp EEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEEESC----SSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEE
T ss_pred EEeCC-CC-EEEEEcCCCeEEEEcccccccccccccCCe----eeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEE
Confidence 99999 65 999999999999999875 322 22333 88999999999875 89999999999999
Q ss_pred cCC-CCc-eeeEEecCCCCEEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCC--CCCCceEEEeecCCC---------CeE
Q 039302 310 TRV-GKS-ALMSFKAHNADVNVISWNR-LASCLLASGSDDGTFSIHDLRLL--KGGDSVVAHFEYHKH---------PVT 375 (479)
Q Consensus 310 ~~~-~~~-~~~~~~~h~~~v~~l~~~p-~~~~~l~sgs~dg~i~iwDlr~~--~~~~~~~~~~~~h~~---------~I~ 375 (479)
++. ... .......|...|.+++|+| ++ .+|++|+.||.|++||++.. .........+..|.. +|+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 255 (342)
T 1yfq_A 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQ-EGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN 255 (342)
T ss_dssp SSCCTTCCCEEEECSCSSCEEEEEECSGGG-CEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEE
T ss_pred CCccccccceeeecCCCCceeEEEECCCCC-CEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEE
Confidence 998 543 2334467888999999999 88 89999999999999999887 111126788888865 999
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC--CCeeeEEEeCCCCcE
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ--KDLKELHWHTQVPGM 453 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~--~~V~~v~w~p~~~~l 453 (479)
+++|+|++ .+|++++.||.|++||+.... ++....++ ..|.+++ |++. +
T Consensus 256 ~~~~s~~~-~~l~~~~~dg~i~vwd~~~~~-------------------------~~~~~~~~h~~~v~~~~--~~~~-~ 306 (342)
T 1yfq_A 256 SIEFSPRH-KFLYTAGSDGIISCWNLQTRK-------------------------KIKNFAKFNEDSVVKIA--CSDN-I 306 (342)
T ss_dssp EEEECTTT-CCEEEEETTSCEEEEETTTTE-------------------------EEEECCCCSSSEEEEEE--ECSS-E
T ss_pred EEEEcCCC-CEEEEecCCceEEEEcCccHh-------------------------HhhhhhcccCCCceEec--CCCC-e
Confidence 99999965 899999999999999998763 23333333 4699999 8875 7
Q ss_pred EEEEcCCC
Q 039302 454 IVSTAADG 461 (479)
Q Consensus 454 l~s~~~dg 461 (479)
|++++.||
T Consensus 307 l~s~s~Dg 314 (342)
T 1yfq_A 307 LCLATSDD 314 (342)
T ss_dssp EEEEEECT
T ss_pred EEEEecCC
Confidence 77777776
No 93
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=9.1e-30 Score=256.10 Aligned_cols=248 Identities=21% Similarity=0.315 Sum_probs=199.9
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|+++.| ++ .+|++|+.||.|++||+.. .+.+..+.+|...|.+++|
T Consensus 166 ~~~~~~h~~~v~~l~~--~~-~~l~sg~~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~~l~~ 221 (435)
T 1p22_A 166 KRILTGHTGSVLCLQY--DE-RVIITGSSDSTVRVWDVNT---------------------GEMLNTLIHHCEAVLHLRF 221 (435)
T ss_dssp EEEECCCSSCEEEEEC--CS-SEEEEEETTSCEEEEESSS---------------------CCEEEEECCCCSCEEEEEC
T ss_pred EEEEcCCCCcEEEEEE--CC-CEEEEEcCCCeEEEEECCC---------------------CcEEEEEcCCCCcEEEEEE
Confidence 3467799999999999 44 7899999999999999987 6778889999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++ +.|++|+.||.|++||+.+..... ....+.+|...|.+++| ++. +|++|+.||.|++||+++++ ++..+.
T Consensus 222 ~~---~~l~s~s~dg~i~vwd~~~~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~s~~~dg~i~vwd~~~~~-~~~~~~ 293 (435)
T 1p22_A 222 NN---GMMVTCSKDRSIAVWDMASPTDIT-LRRVLVGHRAAVNVVDF--DDK-YIVSASGDRTIKVWNTSTCE-FVRTLN 293 (435)
T ss_dssp CT---TEEEEEETTSCEEEEECSSSSCCE-EEEEECCCSSCEEEEEE--ETT-EEEEEETTSEEEEEETTTCC-EEEEEE
T ss_pred cC---CEEEEeeCCCcEEEEeCCCCCCce-eeeEecCCCCcEEEEEe--CCC-EEEEEeCCCeEEEEECCcCc-EEEEEc
Confidence 74 399999999999999998754421 11346789999999999 455 99999999999999999985 778889
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.|...|.+++|+ + .+|++|+.||.|++||++++. ++..+.+|...|++++|+ +.+|++|+.||.|++||+
T Consensus 294 ~~~~~v~~~~~~--~-~~l~~g~~dg~i~iwd~~~~~----~~~~~~~h~~~v~~~~~~---~~~l~sg~~dg~i~vwd~ 363 (435)
T 1p22_A 294 GHKRGIACLQYR--D-RLVVSGSSDNTIRLWDIECGA----CLRVLEGHEELVRCIRFD---NKRIVSGAYDGKIKVWDL 363 (435)
T ss_dssp CCSSCEEEEEEE--T-TEEEEEETTSCEEEEETTTCC----EEEEECCCSSCEEEEECC---SSEEEEEETTSCEEEEEH
T ss_pred CCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCCCC----EEEEEeCCcCcEEEEEec---CCEEEEEeCCCcEEEEEC
Confidence 999999999996 3 799999999999999999987 899999999999999993 489999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
....... . ......+....+| ..|.+++|+ + ..|++++.|| |++|++.+-
T Consensus 364 ~~~~~~~---------------~-~~~~~~~~~~~~h~~~v~~l~~~--~-~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 364 VAALDPR---------------A-PAGTLCLRTLVEHSGRVFRLQFD--E-FQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp HHHTSTT---------------S-CTTTTEEEEECCCSSCCCCEEEC--S-SCEEECCSSSEEEEEC----
T ss_pred CCCCCcc---------------c-cccchheeeccCCCCCeEEEEeC--C-CEEEEEeCCCEEEEEECCCC
Confidence 7553110 0 0000122222333 479999993 3 4688888888 999998765
No 94
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.2e-29 Score=242.45 Aligned_cols=247 Identities=20% Similarity=0.189 Sum_probs=202.7
Q ss_pred CceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
...+...+.+|.+.|++++| |++ .+|++|+.||.|+|||+.. ......+..|...|.
T Consensus 7 ~~~~~~~l~~h~~~v~~~~~-~~~-~~l~s~~~dg~v~vw~~~~---------------------~~~~~~~~~~~~~v~ 63 (313)
T 3odt_A 7 GYQLSATLKGHDQDVRDVVA-VDD-SKVASVSRDGTVRLWSKDD---------------------QWLGTVVYTGQGFLN 63 (313)
T ss_dssp CCEEEEEECCCSSCEEEEEE-EET-TEEEEEETTSEEEEEEESS---------------------SEEEEEEEECSSCEE
T ss_pred cHHHHHHhhCCCCCcEEEEe-cCC-CEEEEEEcCCcEEEEECCC---------------------CEEEEEeecCCccEE
Confidence 33555678999999999999 877 6788999999999999976 456677888999999
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++|+|++. +|++|+.||.|++|++....... ....+.+|...|.+++|+ +. +|++++.||.|++|| .. ...
T Consensus 64 ~~~~~~~~~-~l~~~~~dg~i~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~--~~-~l~~~~~d~~i~~~d--~~-~~~ 135 (313)
T 3odt_A 64 SVCYDSEKE-LLLFGGKDTMINGVPLFATSGED-PLYTLIGHQGNVCSLSFQ--DG-VVISGSWDKTAKVWK--EG-SLV 135 (313)
T ss_dssp EEEEETTTT-EEEEEETTSCEEEEETTCCTTSC-C-CEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEE--TT-EEE
T ss_pred EEEECCCCC-EEEEecCCCeEEEEEeeecCCCC-cccchhhcccCEEEEEec--CC-EEEEEeCCCCEEEEc--CC-cEE
Confidence 999999998 99999999999999997653321 235577899999999993 44 899999999999999 22 367
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
..+..|...+.+++|.|..+.+|++++.||.|++||.. . .+..+.. |...|++++|+|++ . |++++.|+.|
T Consensus 136 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~----~~~~~~~~~~~~i~~~~~~~~~-~-~~~~~~dg~i 207 (313)
T 3odt_A 136 YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--K----VIKTFSGIHNDVVRHLAVVDDG-H-FISCSNDGLI 207 (313)
T ss_dssp EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--E----EEEEECSSCSSCEEEEEEEETT-E-EEEEETTSEE
T ss_pred EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--c----eEEEEeccCcccEEEEEEcCCC-e-EEEccCCCeE
Confidence 77889999999999998444899999999999999933 2 6677777 99999999999965 4 9999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
++||++... .+....+ ...|++++|+|++ . +++++.|+ |++|++.+.
T Consensus 208 ~i~d~~~~~-------------------------~~~~~~~~~~~i~~~~~~~~~-~-l~~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 208 KLVDMHTGD-------------------------VLRTYEGHESFVYCIKLLPNG-D-IVSCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEEETTTCC-------------------------EEEEEECCSSCEEEEEECTTS-C-EEEEETTSEEEEECTTTC
T ss_pred EEEECCchh-------------------------hhhhhhcCCceEEEEEEecCC-C-EEEEecCCEEEEEECCCC
Confidence 999998763 2222222 3579999999998 3 66666676 999987554
No 95
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.8e-29 Score=242.56 Aligned_cols=266 Identities=18% Similarity=0.233 Sum_probs=206.9
Q ss_pred CceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 039302 71 WPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDD 150 (479)
Q Consensus 71 wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 150 (479)
-+..++.|-|+. .+|++|+ .++.|.||++..-
T Consensus 12 ~~v~~~~~~~~~-----------~~l~~~~-----~dg~i~iw~~~~~-------------------------------- 43 (351)
T 3f3f_A 12 DLVHDVVYDFYG-----------RHVATCS-----SDQHIKVFKLDKD-------------------------------- 43 (351)
T ss_dssp SCEEEEEECSSS-----------SEEEEEE-----TTSEEEEEEECSS--------------------------------
T ss_pred cceeEEEEcCCC-----------CEEEEee-----CCCeEEEEECCCC--------------------------------
Confidence 355677887763 2577763 6789999998310
Q ss_pred ccCCCCCCceeEEEEecCCcceeEEEEecC--CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE
Q 039302 151 EEEGGSGTPILQLRKVAHQGCVNRIRAMSQ--NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK 228 (479)
Q Consensus 151 ~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (479)
.....+...+.+|.+.|++++|+|. + .+|++|+.||.|+|||+........ ....+++..
T Consensus 44 -----~~~~~~~~~~~~~~~~v~~~~~~~~~d~-~~l~s~~~dg~v~vwd~~~~~~~~~------------~~~~~~~~~ 105 (351)
T 3f3f_A 44 -----TSNWELSDSWRAHDSSIVAIDWASPEYG-RIIASASYDKTVKLWEEDPDQEECS------------GRRWNKLCT 105 (351)
T ss_dssp -----SCCEEEEEEEECCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEECTTSCTTS------------SCSEEEEEE
T ss_pred -----CCcceecceeccCCCcEEEEEEcCCCCC-CEEEEEcCCCeEEEEecCCCccccc------------ccCcceeee
Confidence 0123445567899999999999994 5 7999999999999999986311100 001245778
Q ss_pred ecCCCCceEEEEeCCC--CCCeEEEEeCCCeEEEEecCCCCcccc---------CCCCcccCCCcEEEEEECCC---CCc
Q 039302 229 FGGHKDEGYAIDWNPV--APGRLVSGDCNSCIHLWEPASDATWNV---------DPNPFIGHAASVEDLQWSPT---ESD 294 (479)
Q Consensus 229 ~~~h~~~v~~l~~s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~---------~~~~~~~h~~~V~~l~~sp~---~~~ 294 (479)
+.+|...|.+++|+|+ +. +|++|+.||.|++||+.+...... .......|...+.+++|+|+ +.
T Consensus 106 ~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~- 183 (351)
T 3f3f_A 106 LNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPE- 183 (351)
T ss_dssp ECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCC-
T ss_pred ecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCc-
Confidence 8899999999999999 76 999999999999999987543210 01112368889999999997 55
Q ss_pred EEEEEeCCCcEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCC---cEEEEEeCCCeEEEEeCCCCCC-----------
Q 039302 295 VFASCSVDGNIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLAS---CLLASGSDDGTFSIHDLRLLKG----------- 359 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~---~~l~sgs~dg~i~iwDlr~~~~----------- 359 (479)
+|++++.++.+.+|+...... .+..+.+|...|++++|+|+++ .+|++|+.||.|++||++....
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 263 (351)
T 3f3f_A 184 KLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNS 263 (351)
T ss_dssp EEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC------------
T ss_pred EEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccce
Confidence 999999999998888877642 3566788999999999999874 6999999999999999987421
Q ss_pred -------------------------------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 360 -------------------------------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 360 -------------------------------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
...++..+.+|...|++++|+|++ .+|++++.||.|+||++....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 264 NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTG-TILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ---------------------------CCSEEEEEEEEECTTSSCEEEEEECSSS-CCEEEEETTSCEEEEEECTTS
T ss_pred eccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCC-CEEEEecCCCcEEEEecCcCc
Confidence 013677788999999999999965 899999999999999998764
No 96
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.9e-29 Score=255.56 Aligned_cols=243 Identities=22% Similarity=0.330 Sum_probs=202.4
Q ss_pred eEEEEecCCcce-eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 161 LQLRKVAHQGCV-NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 161 ~~~~~~~H~~~V-~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
....+.+|.+.| .++.+. + .+|++|+.||+|++||+.. .+.+..+.+|...|+++
T Consensus 113 ~~~~l~~h~~~v~~~~~~~--~-~~l~sgs~dg~i~vwd~~~---------------------~~~~~~~~~h~~~V~~l 168 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE--D-NYVITGADDKMIRVYDSIN---------------------KKFLLQLSGHDGGVWAL 168 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE--T-TEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEE
T ss_pred ceEEEcCCCCCcEEEEEEC--C-CEEEEEcCCCcEEEEECCC---------------------CcEEEEEeCCCcCEEEE
Confidence 335788999885 666654 4 6899999999999999987 67788899999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCce-
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP--TESDVFASCSVDGNIAIWDTRVGKSA- 316 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~~l~s~s~dg~I~iwD~~~~~~~- 316 (479)
+|++++ +|++|+.||+|++||+.++.. ...+.+|...|.+++|++ ++. +|++|+.||+|++||+++....
T Consensus 169 ~~~~~~--~l~s~s~dg~i~vwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 169 KYAHGG--ILVSGSTDRTVRVWDIKKGCC----THVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp EECSTT--EEEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC-
T ss_pred EEcCCC--EEEEEeCCCCEEEEECCCCcE----EEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccc
Confidence 999876 899999999999999987543 245778999999999985 555 9999999999999999976421
Q ss_pred ---------------------eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE
Q 039302 317 ---------------------LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT 375 (479)
Q Consensus 317 ---------------------~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~ 375 (479)
+..+.+|...|.++.. ++ .+|++|+.||.|++||+++.. ++..+.+|...|+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~-~~l~~~~~d~~i~vwd~~~~~----~~~~~~~~~~~v~ 314 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG--HG-NIVVSGSYDNTLIVWDVAQMK----CLYILSGHTDRIY 314 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE--ET-TEEEEEETTSCEEEEETTTTE----EEEEECCCSSCEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEEcC--CC-CEEEEEeCCCeEEEEECCCCc----EEEEecCCCCCEE
Confidence 4456788888888754 45 899999999999999999887 8899999999999
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEE
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMI 454 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll 454 (479)
+++|+|++ .+|++|+.|+.|++||+.... .+....+| ..|.+++|++ .++
T Consensus 315 ~~~~~~~~-~~l~sg~~dg~i~vwd~~~~~-------------------------~~~~~~~h~~~v~~~~~~~---~~l 365 (464)
T 3v7d_B 315 STIYDHER-KRCISASMDTTIRIWDLENGE-------------------------LMYTLQGHTALVGLLRLSD---KFL 365 (464)
T ss_dssp EEEEETTT-TEEEEEETTSCEEEEETTTTE-------------------------EEEEECCCSSCEEEEEECS---SEE
T ss_pred EEEEcCCC-CEEEEEeCCCcEEEEECCCCc-------------------------EEEEEeCCCCcEEEEEEcC---CEE
Confidence 99999955 899999999999999998763 23333333 4799999984 478
Q ss_pred EEEcCCC-ceEEeeecc
Q 039302 455 VSTAADG-FNILMPSNI 470 (479)
Q Consensus 455 ~s~~~dg-i~iw~~~~~ 470 (479)
++++.|| |++|++.+.
T Consensus 366 ~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 366 VSAAADGSIRGWDANDY 382 (464)
T ss_dssp EEEETTSEEEEEETTTC
T ss_pred EEEeCCCcEEEEECCCC
Confidence 8888888 999998654
No 97
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=3.6e-30 Score=253.04 Aligned_cols=205 Identities=12% Similarity=0.148 Sum_probs=168.3
Q ss_pred cCCcceeEEEEecCCCcE-EEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHI-CASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~-lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+...+.+++|+|+|..+ +|+++.|++|+|||+.. .+++..+. |..+|++|+|+|++
T Consensus 131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~---------------------~~~~~~~~-~~~~V~~v~fspdg 188 (365)
T 4h5i_A 131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSD---------------------LTEKFEIE-TRGEVKDLHFSTDG 188 (365)
T ss_dssp CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTT---------------------TEEEEEEE-CSSCCCEEEECTTS
T ss_pred CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCC---------------------CcEEEEeC-CCCceEEEEEccCC
Confidence 344568899999999544 34556799999999987 55666664 77789999999999
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC----cEEEEEcCCCCc---eee
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG----NIAIWDTRVGKS---ALM 318 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg----~I~iwD~~~~~~---~~~ 318 (479)
. +|++++.+ .+++|+..++.... .....+|...|.+++|+|++. ++++++.|+ .+++|++..... ...
T Consensus 189 ~-~l~s~s~~-~~~~~~~~~~~~~~--~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~ 263 (365)
T 4h5i_A 189 K-VVAYITGS-SLEVISTVTGSCIA--RKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVLRSK 263 (365)
T ss_dssp S-EEEEECSS-CEEEEETTTCCEEE--EECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEEEEE
T ss_pred c-eEEeccce-eEEEEEeccCccee--eeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecceeee
Confidence 8 99998855 56666665544322 134567889999999999998 889988887 688999887643 234
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.+..|...|++++|+|++ .+||+|+.|++|+|||+++++ ++..+ .+|..+|++|+|+|++ .+|||||.|++|+
T Consensus 264 ~~~~~~~~V~~~~~Spdg-~~lasgs~D~~V~iwd~~~~~----~~~~~~~gH~~~V~~v~fSpdg-~~laS~S~D~tvr 337 (365)
T 4h5i_A 264 QVTNRFKGITSMDVDMKG-ELAVLASNDNSIALVKLKDLS----MSKIFKQAHSFAITEVTISPDS-TYVASVSAANTIH 337 (365)
T ss_dssp EEESSCSCEEEEEECTTS-CEEEEEETTSCEEEEETTTTE----EEEEETTSSSSCEEEEEECTTS-CEEEEEETTSEEE
T ss_pred eecCCCCCeEeEEECCCC-CceEEEcCCCEEEEEECCCCc----EEEEecCcccCCEEEEEECCCC-CEEEEEeCCCeEE
Confidence 567899999999999999 999999999999999999987 77775 7899999999999965 9999999999999
Q ss_pred EEECCCC
Q 039302 398 IWDLSLE 404 (479)
Q Consensus 398 iwdl~~~ 404 (479)
||++...
T Consensus 338 vw~ip~~ 344 (365)
T 4h5i_A 338 IIKLPLN 344 (365)
T ss_dssp EEECCTT
T ss_pred EEEcCCC
Confidence 9999754
No 98
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.2e-29 Score=246.98 Aligned_cols=254 Identities=22% Similarity=0.285 Sum_probs=202.5
Q ss_pred cCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 039302 70 GWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSD 149 (479)
Q Consensus 70 ~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (479)
.-+..++.|-|+. .+|++|+ .++.|.||++..
T Consensus 11 ~~~v~~~~~s~~~-----------~~l~~~~-----~dg~i~iw~~~~-------------------------------- 42 (379)
T 3jrp_A 11 NELIHDAVLDYYG-----------KRLATCS-----SDKTIKIFEVEG-------------------------------- 42 (379)
T ss_dssp CCCEEEEEECSSS-----------SEEEEEE-----TTSCEEEEEEET--------------------------------
T ss_pred cccEEEEEEcCCC-----------CEEEEEE-----CCCcEEEEecCC--------------------------------
Confidence 3455677777763 2577763 578899999841
Q ss_pred cccCCCCCCceeEEEEecCCcceeEEEEecC--CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE
Q 039302 150 DEEEGGSGTPILQLRKVAHQGCVNRIRAMSQ--NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV 227 (479)
Q Consensus 150 ~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (479)
........+.+|.+.|++++|+++ + .+|++|+.||.|+|||+... ....+.
T Consensus 43 -------~~~~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~~~dg~v~iwd~~~~-------------------~~~~~~ 95 (379)
T 3jrp_A 43 -------ETHKLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENG-------------------RWSQIA 95 (379)
T ss_dssp -------TEEEEEEEECCCSSCEEEEEECCGGGC-SEEEEEETTSCEEEEEEETT-------------------EEEEEE
T ss_pred -------CcceeeeEecCCCCcEEEEEeCCCCCC-CEEEEeccCCEEEEEEcCCC-------------------ceeEee
Confidence 022344567799999999999977 5 79999999999999999872 112667
Q ss_pred EecCCCCceEEEEeCCC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC-------------C
Q 039302 228 KFGGHKDEGYAIDWNPV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT-------------E 292 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-------------~ 292 (479)
.+.+|...|.+++|+|+ +. +|++|+.||.|++||+....... ...+.+|...|.+++|+|. +
T Consensus 96 ~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T 3jrp_A 96 VHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKES 172 (379)
T ss_dssp EECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCC--EEEEECCTTCEEEEEECCCC----------CTT
T ss_pred eecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCcee--eEEecCCCCceEEEEEcCccccccccccCCCCC
Confidence 78889999999999999 76 99999999999999998754322 1346689999999999994 6
Q ss_pred CcEEEEEeCCCcEEEEEcCCCCc---eeeEEecCCCCEEEEEEcCCC--CcEEEEEeCCCeEEEEeCCCCCCCCc-eEEE
Q 039302 293 SDVFASCSVDGNIAIWDTRVGKS---ALMSFKAHNADVNVISWNRLA--SCLLASGSDDGTFSIHDLRLLKGGDS-VVAH 366 (479)
Q Consensus 293 ~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~~h~~~v~~l~~~p~~--~~~l~sgs~dg~i~iwDlr~~~~~~~-~~~~ 366 (479)
. +|++|+.||.|++||++.... ....+..|...|++++|+|++ +.+|++|+.||.|++||++....... .+..
T Consensus 173 ~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 251 (379)
T 3jrp_A 173 R-KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLK 251 (379)
T ss_dssp C-EEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESS
T ss_pred C-EEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCccceeeeec
Confidence 6 999999999999999987642 345667899999999999993 39999999999999999998652100 1122
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 367 FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 367 ~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
...|...|++++|+|++ .+|++++.||.|++|++..
T Consensus 252 ~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 252 EEKFPDVLWRASWSLSG-NVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSCCSSCEEEEEECSSS-CCEEEEESSSSEEEEEEEE
T ss_pred cccCCCcEEEEEEcCCC-CEEEEecCCCcEEEEeCCC
Confidence 23488999999999965 8999999999999999984
No 99
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=1.3e-29 Score=287.18 Aligned_cols=252 Identities=16% Similarity=0.254 Sum_probs=211.6
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|++++|+|++ .++|+|+.||+|+|||+.+ .+.+.++.+|...|.+++|
T Consensus 608 ~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~i~vw~~~~---------------------~~~~~~~~~h~~~v~~~~~ 665 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQDG-QRIASCGADKTLQVFKAET---------------------GEKLLDIKAHEDEVLCCAF 665 (1249)
T ss_dssp SEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTT---------------------CCEEEEECCCSSCEEEEEE
T ss_pred eEEEecccccEEEEEECCCC-CEEEEEeCCCeEEEEECCC---------------------CCEEEEeccCCCCEEEEEE
Confidence 35678999999999999999 7889999999999999987 6778889999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCC-CcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTE-SDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~-~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
+|++. +|++|+.||.|++||+.++.. ...+.+|...|.+++|+|++ ..++++|+.||.|++||++++. ++..+
T Consensus 666 s~~~~-~l~s~~~d~~v~vwd~~~~~~----~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~ 739 (1249)
T 3sfz_A 666 SSDDS-YIATCSADKKVKIWDSATGKL----VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTM 739 (1249)
T ss_dssp CTTSS-EEEEEETTSEEEEEETTTCCE----EEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEE
T ss_pred ecCCC-EEEEEeCCCeEEEEECCCCce----EEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhhee
Confidence 99998 999999999999999988654 24577899999999999953 2389999999999999999986 77788
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC----------------------------------------
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG---------------------------------------- 360 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~---------------------------------------- 360 (479)
.+|...|++++|+|++ .+|++|+.||.|++||+++....
T Consensus 740 ~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~ 818 (1249)
T 3sfz_A 740 FGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAK 818 (1249)
T ss_dssp CCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEET
T ss_pred cCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcC
Confidence 9999999999999998 89999999999999998765310
Q ss_pred ----------CceEEEe-ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCC
Q 039302 361 ----------DSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPP 429 (479)
Q Consensus 361 ----------~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 429 (479)
...+..+ .+|...|++++|+|++ .++++++.|+.|++||+....
T Consensus 819 ~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~dg~v~vwd~~~~~------------------------ 873 (1249)
T 3sfz_A 819 NKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQYCVELWNIDSRL------------------------ 873 (1249)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSSSCEEEEETTTTE------------------------
T ss_pred CcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCc------------------------
Confidence 0011112 2688899999999955 999999999999999998763
Q ss_pred ceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 430 QLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 430 ~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.+....+| ..|++++|+|++. .+++++.|+ +++|++.+
T Consensus 874 -~~~~~~~h~~~v~~v~~spdg~-~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 874 -KVADCRGHLSWVHGVMFSPDGS-SFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp -EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEHHH
T ss_pred -eeeecCCCccceEEEEECCCCC-EEEEEeCCCeEEEEEccc
Confidence 23333333 4699999999986 667777777 99999764
No 100
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=9.4e-30 Score=246.56 Aligned_cols=253 Identities=13% Similarity=0.111 Sum_probs=199.0
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+|.+.|++++|+|++ .+|++++.||.|+||++..... ..+...+.+|...|.+++|+|++
T Consensus 8 ~~h~~~v~~~~~s~~~-~~l~~~~~d~~v~iw~~~~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~ 68 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSK-SLLLITSWDGSLTVYKFDIQAK------------------NVDLLQSLRYKHPLLCCNFIDNT 68 (342)
T ss_dssp SCCSSCEEEEEEEGGG-TEEEEEETTSEEEEEEEETTTT------------------EEEEEEEEECSSCEEEEEEEESS
T ss_pred cCCCCcEEEEEEcCCC-CEEEEEcCCCeEEEEEeCCCCc------------------cccceeeeecCCceEEEEECCCC
Confidence 4899999999999998 6888999999999999986210 11245556899999999999986
Q ss_pred CC-eEEEEeCCCeEEEEec-CCCCccccCCCCccc--CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC---------
Q 039302 246 PG-RLVSGDCNSCIHLWEP-ASDATWNVDPNPFIG--HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV--------- 312 (479)
Q Consensus 246 ~~-~l~sg~~dg~I~lwd~-~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~--------- 312 (479)
. +|++|+.||.|++|++ .++.. ..+.+ |...|.+++|+| +. +|++++.||.|++||+++
T Consensus 69 -~~~l~~~~~dg~i~~wd~~~~~~~-----~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 69 -DLQIYVGTVQGEILKVDLIGSPSF-----QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp -SEEEEEEETTSCEEEECSSSSSSE-----EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred -CcEEEEEcCCCeEEEEEeccCCce-----EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEccccccccccccc
Confidence 4 7999999999999999 76543 34667 999999999999 66 999999999999999987
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CCCCCceEEEeecCCCCeEEEEEeC-CCCCEEEEE
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL-LKGGDSVVAHFEYHKHPVTSIEWSP-HEGSTLAVS 390 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~-~~~~~~~~~~~~~h~~~I~~v~~sp-~~~~~las~ 390 (479)
.+ ++..+. |...|.+++|+|++ |++++.|+.|++||++. ... ........|...|++++|+| ++ .+|+++
T Consensus 141 ~~-~~~~~~-~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~i~~i~~~~~~~-~~l~~~ 212 (342)
T 1yfq_A 141 NL-NSNNTK-VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDD--NGTIEESGLKYQIRDVALLPKEQ-EGYACS 212 (342)
T ss_dssp ES-CSSSSS-SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTC--CCEEEECSCSSCEEEEEECSGGG-CEEEEE
T ss_pred CC-eeeEEe-eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccc--cceeeecCCCCceeEEEECCCCC-CEEEEE
Confidence 53 444444 88999999999855 99999999999999998 542 13345556889999999999 76 899999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-------CCCeeeEEEeCCCCcEEEEEcCCC-c
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-------QKDLKELHWHTQVPGMIVSTAADG-F 462 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-------~~~V~~v~w~p~~~~ll~s~~~dg-i 462 (479)
+.||.|++|++...... ....+...+..|.. ...|.+++|+|++. +|++++.+| |
T Consensus 213 ~~dg~i~i~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~i 275 (342)
T 1yfq_A 213 SIDGRVAVEFFDDQGDD----------------YNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK-FLYTAGSDGII 275 (342)
T ss_dssp ETTSEEEEEECCTTCCS----------------TTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC-CEEEEETTSCE
T ss_pred ecCCcEEEEEEcCCCcc----------------cccccceeeecccccccccccceeEEEEEEcCCCC-EEEEecCCceE
Confidence 99999999999875100 00011233333432 12799999999986 566666676 9
Q ss_pred eEEeeecc
Q 039302 463 NILMPSNI 470 (479)
Q Consensus 463 ~iw~~~~~ 470 (479)
++|++.+.
T Consensus 276 ~vwd~~~~ 283 (342)
T 1yfq_A 276 SCWNLQTR 283 (342)
T ss_dssp EEEETTTT
T ss_pred EEEcCccH
Confidence 99998654
No 101
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=1.4e-28 Score=247.96 Aligned_cols=239 Identities=19% Similarity=0.321 Sum_probs=200.8
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|+++.|++ .++++|+.||+|++||+.. .+.+..+.+|...|.+++|
T Consensus 152 ~~~~~~h~~~v~~~~~~~---~~l~s~~~dg~i~vwd~~~---------------------~~~~~~~~~h~~~v~~~~~ 207 (445)
T 2ovr_B 152 LRTLVGHTGGVWSSQMRD---NIIISGSTDRTLKVWNAET---------------------GECIHTLYGHTSTVRCMHL 207 (445)
T ss_dssp EEECCCCSSCEEEEEEET---TEEEEEETTSCEEEEETTT---------------------TEEEEEECCCSSCEEEEEE
T ss_pred EEEEcCCCCCEEEEEecC---CEEEEEeCCCeEEEEECCc---------------------CcEEEEECCCCCcEEEEEe
Confidence 346779999999999983 5899999999999999987 5677889999999999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++ . .|++|+.||.|++||+.++... ..+.+|...|.+++| ++. .+++|+.||.|++||++++. ++..+.
T Consensus 208 ~~--~-~l~s~s~dg~i~~wd~~~~~~~----~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~ 276 (445)
T 2ovr_B 208 HE--K-RVVSGSRDATLRVWDIETGQCL----HVLMGHVAAVRCVQY--DGR-RVVSGAYDFMVKVWDPETET-CLHTLQ 276 (445)
T ss_dssp ET--T-EEEEEETTSEEEEEESSSCCEE----EEEECCSSCEEEEEE--CSS-CEEEEETTSCEEEEEGGGTE-EEEEEC
T ss_pred cC--C-EEEEEeCCCEEEEEECCCCcEE----EEEcCCcccEEEEEE--CCC-EEEEEcCCCEEEEEECCCCc-EeEEec
Confidence 63 3 8999999999999999876542 346789999999999 455 89999999999999999875 777888
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.|...|.+++| ++ .+|++|+.||.|++||+++++ ++..+.+|...+.++.+++ .+|++|+.||.|++||+
T Consensus 277 ~~~~~v~~~~~--~~-~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~ 346 (445)
T 2ovr_B 277 GHTNRVYSLQF--DG-IHVVSGSLDTSIRVWDVETGN----CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDI 346 (445)
T ss_dssp CCSSCEEEEEE--CS-SEEEEEETTSCEEEEETTTCC----EEEEECCCCSCEEEEEEET---TEEEEEETTSCEEEEET
T ss_pred CCCCceEEEEE--CC-CEEEEEeCCCeEEEEECCCCC----EEEEEcCCcccEEEEEEeC---CEEEEEeCCCeEEEEEC
Confidence 99999999999 44 799999999999999999987 8899999999999999864 79999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeec-CCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-GQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+..... ..+..+. +...|.+++|++ .++++++.|| |++|++.+.
T Consensus 347 ~~~~~~----------------------~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 347 KTGQCL----------------------QTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp TTCCEE----------------------EEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTC
T ss_pred CCCcEE----------------------EEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEECCCC
Confidence 876310 1122211 234799999975 4788888888 999997653
No 102
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=8e-29 Score=280.65 Aligned_cols=208 Identities=21% Similarity=0.376 Sum_probs=181.7
Q ss_pred EEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 162 QLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 162 ~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
...+.+|.+.|++++|+|++ .+||+|+.||.|+|||+.+ .+.+..+.+|...|.+++|
T Consensus 650 ~~~~~~h~~~v~~~~~s~~~-~~l~s~~~d~~v~vwd~~~---------------------~~~~~~~~~~~~~v~~~~~ 707 (1249)
T 3sfz_A 650 LLDIKAHEDEVLCCAFSSDD-SYIATCSADKKVKIWDSAT---------------------GKLVHTYDEHSEQVNCCHF 707 (1249)
T ss_dssp EEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------CCEEEEEECCSSCEEEEEE
T ss_pred EEEeccCCCCEEEEEEecCC-CEEEEEeCCCeEEEEECCC---------------------CceEEEEcCCCCcEEEEEE
Confidence 34677999999999999999 7889999999999999987 6788899999999999999
Q ss_pred CCCCCC-eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce----
Q 039302 242 NPVAPG-RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA---- 316 (479)
Q Consensus 242 s~~~~~-~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~---- 316 (479)
+|++.. ++++|+.||.|++||+.++... ..+.+|...|++++|+|++. +|++|+.||+|++||++++...
T Consensus 708 ~~~~~~~~l~sg~~d~~v~vwd~~~~~~~----~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~ 782 (1249)
T 3sfz_A 708 TNKSNHLLLATGSNDFFLKLWDLNQKECR----NTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSIN 782 (1249)
T ss_dssp CSSSSCCEEEEEETTSCEEEEETTSSSEE----EEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred ecCCCceEEEEEeCCCeEEEEECCCcchh----heecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCcccceec
Confidence 995432 8999999999999999876542 34678999999999999998 9999999999999998765210
Q ss_pred -------------------------------------------------eeE-EecCCCCEEEEEEcCCCCcEEEEEeCC
Q 039302 317 -------------------------------------------------LMS-FKAHNADVNVISWNRLASCLLASGSDD 346 (479)
Q Consensus 317 -------------------------------------------------~~~-~~~h~~~v~~l~~~p~~~~~l~sgs~d 346 (479)
... ..+|...|.+++|+|++ .++++|+.|
T Consensus 783 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~-~~l~~~~~d 861 (1249)
T 3sfz_A 783 VKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYD-HLAVIALSQ 861 (1249)
T ss_dssp CCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSST-TEEEEECSS
T ss_pred ccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCC-CEEEEEeCC
Confidence 001 12678889999999999 899999999
Q ss_pred CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 347 GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 347 g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
|.|++||+.+.. .+..+.+|...|++++|+|++ .+|++++.|+.|++|++.
T Consensus 862 g~v~vwd~~~~~----~~~~~~~h~~~v~~v~~spdg-~~l~s~s~dg~v~vw~~~ 912 (1249)
T 3sfz_A 862 YCVELWNIDSRL----KVADCRGHLSWVHGVMFSPDG-SSFLTASDDQTIRVWETK 912 (1249)
T ss_dssp SCEEEEETTTTE----EEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEHH
T ss_pred CeEEEEEcCCCc----eeeecCCCccceEEEEECCCC-CEEEEEeCCCeEEEEEcc
Confidence 999999999877 789999999999999999955 899999999999999975
No 103
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=9.2e-29 Score=258.86 Aligned_cols=253 Identities=14% Similarity=0.192 Sum_probs=206.7
Q ss_pred eEEEEecCCcc-eeEEEEec--CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 161 LQLRKVAHQGC-VNRIRAMS--QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 161 ~~~~~~~H~~~-V~~v~~~p--~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
....+.+|.+. |++++|+| ++ .+||+|+.||.|+|||+........ .....+..+..|...|.
T Consensus 55 ~~~~~~~h~~~~v~~~~~sp~~~~-~~l~s~~~dg~v~vw~~~~~~~~~~-------------~~~~~~~~~~~~~~~v~ 120 (615)
T 1pgu_A 55 PVVQFTGHGSSVVTTVKFSPIKGS-QYLCSGDESGKVIVWGWTFDKESNS-------------VEVNVKSEFQVLAGPIS 120 (615)
T ss_dssp SEEEECTTTTSCEEEEEECSSTTC-CEEEEEETTSEEEEEEEEEEGGGTE-------------EEEEEEEEEECCSSCEE
T ss_pred cceEEecCCCceEEEEEECcCCCC-CEEEEecCCCEEEEEeCCCCccccc-------------ccccccchhhcccccEE
Confidence 44578899999 99999999 88 7899999999999999964100000 01345667888999999
Q ss_pred EEEeCCCCCCeEEEEeCC----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 238 AIDWNPVAPGRLVSGDCN----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
+++|+|++. +|++++.+ +.|++||.. .. ...+.+|...|.+++|+|+++.+|++++.||.|++||+++.
T Consensus 121 ~~~~s~~~~-~l~~~~~~~~~~~~v~~~d~~--~~----~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~ 193 (615)
T 1pgu_A 121 DISWDFEGR-RLCVVGEGRDNFGVFISWDSG--NS----LGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 193 (615)
T ss_dssp EEEECTTSS-EEEEEECCSSCSEEEEETTTC--CE----EEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred EEEEeCCCC-EEEEeccCCCCccEEEEEECC--Cc----ceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc
Confidence 999999998 99999987 799999942 22 24467899999999999999878999999999999999887
Q ss_pred CceeeEEecCCC---CEEEEEEcCC-CCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-e---cCCCCeEEEEEeCCCCC
Q 039302 314 KSALMSFKAHNA---DVNVISWNRL-ASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-E---YHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 314 ~~~~~~~~~h~~---~v~~l~~~p~-~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~---~h~~~I~~v~~sp~~~~ 385 (479)
+ .+..+..|.. .|++++|+|+ + .+|++|+.||.|++||+++.+ .+..+ . .|..+|++++|+ ++.
T Consensus 194 ~-~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~v~~~~~~--~~~ 265 (615)
T 1pgu_A 194 K-FSASDRTHHKQGSFVRDVEFSPDSG-EFVITVGSDRKISCFDGKSGE----FLKYIEDDQEPVQGGIFALSWL--DSQ 265 (615)
T ss_dssp E-EEEEECSSSCTTCCEEEEEECSTTC-CEEEEEETTCCEEEEETTTCC----EEEECCBTTBCCCSCEEEEEES--SSS
T ss_pred c-eeeeecccCCCCceEEEEEECCCCC-CEEEEEeCCCeEEEEECCCCC----EeEEecccccccCCceEEEEEc--CCC
Confidence 5 6778888998 9999999999 7 899999999999999999887 78888 6 899999999999 459
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-----CCeeeEEEeCCCCcEEEEEcCC
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-----KDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-----~~V~~v~w~p~~~~ll~s~~~d 460 (479)
+|++++.|+.|++||+.... .+.....+ ..+..+.|. ++. .+++++.+
T Consensus 266 ~l~~~~~d~~i~~wd~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~-~l~~~~~~ 318 (615)
T 1pgu_A 266 KFATVGADATIRVWDVTTSK-------------------------CVQKWTLDKQQLGNQQVGVVAT-GNG-RIISLSLD 318 (615)
T ss_dssp EEEEEETTSEEEEEETTTTE-------------------------EEEEEECCTTCGGGCEEEEEEE-ETT-EEEEEETT
T ss_pred EEEEEcCCCcEEEEECCCCc-------------------------EEEEEcCCCCcccCceeEEEeC-CCC-eEEEEECC
Confidence 99999999999999998763 22222222 358888886 554 66666666
Q ss_pred C-ceEEeeec
Q 039302 461 G-FNILMPSN 469 (479)
Q Consensus 461 g-i~iw~~~~ 469 (479)
+ +.+|++.+
T Consensus 319 g~i~~~d~~~ 328 (615)
T 1pgu_A 319 GTLNFYELGH 328 (615)
T ss_dssp SCEEEEETTE
T ss_pred CCEEEEECCC
Confidence 6 99998754
No 104
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.97 E-value=2.5e-28 Score=246.15 Aligned_cols=241 Identities=20% Similarity=0.321 Sum_probs=200.3
Q ss_pred eeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
.....+.+|.+.|+++.+.+ ..+++|+.||.|++||+.. .+.+..+.+|...|.++
T Consensus 190 ~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~---------------------~~~~~~~~~~~~~v~~~ 245 (445)
T 2ovr_B 190 ECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIET---------------------GQCLHVLMGHVAAVRCV 245 (445)
T ss_dssp EEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSS---------------------CCEEEEEECCSSCEEEE
T ss_pred cEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCC---------------------CcEEEEEcCCcccEEEE
Confidence 34456778999999999964 5788999999999999987 67788899999999999
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
+| ++. +|++|+.||.|++||+.++.. ...+.+|...|.+++| ++. .+++|+.||.|++||+++++ ++..
T Consensus 246 ~~--~~~-~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~v~~~~~--~~~-~l~~~~~d~~i~i~d~~~~~-~~~~ 314 (445)
T 2ovr_B 246 QY--DGR-RVVSGAYDFMVKVWDPETETC----LHTLQGHTNRVYSLQF--DGI-HVVSGSLDTSIRVWDVETGN-CIHT 314 (445)
T ss_dssp EE--CSS-CEEEEETTSCEEEEEGGGTEE----EEEECCCSSCEEEEEE--CSS-EEEEEETTSCEEEEETTTCC-EEEE
T ss_pred EE--CCC-EEEEEcCCCEEEEEECCCCcE----eEEecCCCCceEEEEE--CCC-EEEEEeCCCeEEEEECCCCC-EEEE
Confidence 99 455 999999999999999977543 2446789999999999 455 89999999999999999986 7788
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---CCCCeEEEEEeCCCCCEEEEEeCCCcE
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---HKHPVTSIEWSPHEGSTLAVSSADNQL 396 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---h~~~I~~v~~sp~~~~~las~s~Dg~I 396 (479)
+..|...+.++.+++ .+|++|+.||.|++||++++. ++..+.. |..+|++++|++ .+|++|+.||.|
T Consensus 315 ~~~~~~~v~~~~~~~---~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v 384 (445)
T 2ovr_B 315 LTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQ----CLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTV 384 (445)
T ss_dssp ECCCCSCEEEEEEET---TEEEEEETTSCEEEEETTTCC----EEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEE
T ss_pred EcCCcccEEEEEEeC---CEEEEEeCCCeEEEEECCCCc----EEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeE
Confidence 889999999999863 689999999999999999887 7888876 889999999964 799999999999
Q ss_pred EEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe---ecCCCCeeeEEEeCCCCcEEEEEcCCC-----ceEEeee
Q 039302 397 TIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI---HQGQKDLKELHWHTQVPGMIVSTAADG-----FNILMPS 468 (479)
Q Consensus 397 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~---h~g~~~V~~v~w~p~~~~ll~s~~~dg-----i~iw~~~ 468 (479)
++||+..+... ..+.. ......|.+++|+|++. ++++++.|| +.||++.
T Consensus 385 ~iwd~~~~~~~----------------------~~~~~~~~~~~~~~v~~~~~s~~~~-~la~~~~dg~~~~~l~v~df~ 441 (445)
T 2ovr_B 385 KLWDLKTGEFI----------------------RNLVTLESGGSGGVVWRIRASNTKL-VCAVGSRNGTEETKLLVLDFD 441 (445)
T ss_dssp EEEETTTCCEE----------------------EEEEECTTGGGTCEEEEEEECSSEE-EEEEECSSSSSCCEEEEEECC
T ss_pred EEEECCCCcee----------------------eeeeccccCCCCceEEEEEecCCEE-EEEEcccCCCCccEEEEEECC
Confidence 99999877411 11111 12224699999999984 778888877 7777764
No 105
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=1.3e-28 Score=246.42 Aligned_cols=242 Identities=21% Similarity=0.360 Sum_probs=202.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE--ecCCCCceEEEEeCCCCCCe
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK--FGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h~~~v~~l~~s~~~~~~ 248 (479)
.++.|.|++++ +||+|. |++|+|||..+ ++.+.. +.+|...|++|+|+|++. +
T Consensus 107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~t---------------------g~~~~~~~~~~~~~~V~sv~fspdg~-~ 161 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASS---------------------GDILQLLQMEQPGEYISSVAWIKEGN-Y 161 (420)
T ss_dssp TCBCEEECTTS--EEEEEE-TTEEEEEETTT---------------------CCEEEEEECCSTTCCEEEEEECTTSS-E
T ss_pred cceeEEECCCC--EEEEEe-CCEEEEEECCC---------------------CCEEEEEEecCCCCcEEEEEECCCCC-E
Confidence 47889999854 888865 89999999987 444444 456788999999999998 9
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
|++|+.||.|+|||+.++.. ...+.+|...|.+++|++ . +|++|+.|+.+++||.+.....+..+.+|...+.
T Consensus 162 lasgs~Dg~v~iWd~~~~~~----~~~~~~h~~~v~~~s~~~--~-~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 162 LAVGTSSAEVQLWDVQQQKR----LRNMTSHSARVGSLSWNS--Y-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 234 (420)
T ss_dssp EEEEETTSCEEEEETTTTEE----EEEECCCSSCEEEEEEET--T-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred EEEEECCCeEEEEEcCCCcE----EEEEeCCCCceEEEeeCC--C-EEEEEeCCCceeEeeecccceeeEEeccccccee
Confidence 99999999999999987644 245778999999999864 4 8999999999999999988767788899999999
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE--eCCCcEEEEECCCCCC
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS--SADNQLTIWDLSLEKD 406 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~--s~Dg~I~iwdl~~~~~ 406 (479)
.+.|+|++ .+|++++.|+.|++||.+........+..+..|...|.+++|+|.+..+++++ +.|++|+|||+....
T Consensus 235 ~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~- 312 (420)
T 4gga_A 235 GLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA- 312 (420)
T ss_dssp EEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTE-
T ss_pred eeeecCCC-CeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccc-
Confidence 99999999 89999999999999999987754556778889999999999999888888775 479999999998873
Q ss_pred hHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc-CCC-ceEEeeecc
Q 039302 407 EEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA-ADG-FNILMPSNI 470 (479)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~-~dg-i~iw~~~~~ 470 (479)
.+.....+..|.++.|+|++..++++++ .|+ |+||++.+.
T Consensus 313 ------------------------~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~ 354 (420)
T 4gga_A 313 ------------------------CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 354 (420)
T ss_dssp ------------------------EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred ------------------------cceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC
Confidence 3334444568999999999987766554 455 999998654
No 106
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=275.48 Aligned_cols=206 Identities=13% Similarity=0.115 Sum_probs=174.0
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
....+|.+.|++++|+|++ .+||+|+.||+|+||+... .+....+ .|...|.+|+|+
T Consensus 11 ~~~~gh~~~V~~lafspdg-~~lAsgs~Dg~I~lw~~~~---------------------~~~~~~~-~~~~~V~~l~fs 67 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQ-NLLAIATVTGEVHIYGQQQ---------------------VEVVIKL-EDRSAIKEMRFV 67 (902)
T ss_dssp EEEEECSSCEEEEEEETTT-TEEEEEETTSEEEEECSTT---------------------CEEEEEC-SSCCCEEEEEEE
T ss_pred ccccCCCCCcEEEEECCCC-CEEEEEeCCCEEEEEeCCC---------------------cEEEEEc-CCCCCEEEEEEc
Confidence 4567999999999999999 7999999999999999865 3333333 478899999999
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee-----
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL----- 317 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~----- 317 (479)
| +. +|++++.|++|+|||+.++... ..+ .|...|++++|+|++. +|++|+.||+|++||+++.....
T Consensus 68 p-g~-~L~S~s~D~~v~lWd~~~~~~~----~~~-~~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~ 139 (902)
T 2oaj_A 68 K-GI-YLVVINAKDTVYVLSLYSQKVL----TTV-FVPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDN 139 (902)
T ss_dssp T-TT-EEEEEETTCEEEEEETTTCSEE----EEE-ECSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred C-CC-EEEEEECcCeEEEEECCCCcEE----EEE-cCCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceecc
Confidence 9 76 8999999999999999875442 223 3668999999999998 99999999999999999874211
Q ss_pred -----eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------------------CCCe
Q 039302 318 -----MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------------------KHPV 374 (479)
Q Consensus 318 -----~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------------------~~~I 374 (479)
..+.+|...|++++|+|++..+|++|+.||.| +||+++.. ++..+..| ...|
T Consensus 140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V 214 (902)
T 2oaj_A 140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE----IKQSFIYELPPFAPGGDFSEKTNEKRTPKV 214 (902)
T ss_dssp HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE----EEEEECCCBCTTCCCSTTCCCTTSCBCCCE
T ss_pred ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc----eEEEEecccCCcCCCcccccccccccCCCe
Confidence 22356889999999999765799999999999 99999877 67777765 5789
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 375 TSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 375 ~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
++++|+|++ .+|++|+.|+.|++||++.++
T Consensus 215 ~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~ 244 (902)
T 2oaj_A 215 IQSLYHPNS-LHIITIHEDNSLVFWDANSGH 244 (902)
T ss_dssp EEEEECTTS-SEEEEEETTCCEEEEETTTCC
T ss_pred EEEEEcCCC-CEEEEEECCCeEEEEECCCCc
Confidence 999999964 999999999999999998763
No 107
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=8.1e-29 Score=259.26 Aligned_cols=250 Identities=18% Similarity=0.237 Sum_probs=205.5
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc-eEEEEeCC-
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE-GYAIDWNP- 243 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~- 243 (479)
..|.+.|++++|+|++ .+||+++ ++.|+||++..... .......+.+|... |++++|+|
T Consensus 15 ~~~~~~v~~~~~spdg-~~l~~~~-~~~v~v~~~~~~~~-----------------~~~~~~~~~~h~~~~v~~~~~sp~ 75 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTT-NAIAYPC-GKSAFVRCLDDGDS-----------------KVPPVVQFTGHGSSVVTTVKFSPI 75 (615)
T ss_dssp CCCTTCCCCCEEETTT-TEEEEEE-TTEEEEEECCSSCC-----------------SSCSEEEECTTTTSCEEEEEECSS
T ss_pred CCccCceeEEEECCCC-CEEEEec-CCeEEEEECCCCCC-----------------ccccceEEecCCCceEEEEEECcC
Confidence 3688999999999999 6777766 78999999986100 01678889999999 99999999
Q ss_pred -CCCCeEEEEeCCCeEEEEecCCCCc----cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC----CcEEEEEcCCCC
Q 039302 244 -VAPGRLVSGDCNSCIHLWEPASDAT----WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----GNIAIWDTRVGK 314 (479)
Q Consensus 244 -~~~~~l~sg~~dg~I~lwd~~~~~~----~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----g~I~iwD~~~~~ 314 (479)
++. +|++|+.||.|++|++.++.. .......+..|...|.+++|+|++. +|++++.+ +.|++||. .
T Consensus 76 ~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~~~~~~~~v~~~d~--~- 150 (615)
T 1pgu_A 76 KGSQ-YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDS--G- 150 (615)
T ss_dssp TTCC-EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTT--C-
T ss_pred CCCC-EEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC-EEEEeccCCCCccEEEEEEC--C-
Confidence 988 999999999999999964310 0011245677899999999999998 88888887 68999983 3
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCC---CeEEEEEeCCCCCEEEEEe
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKH---PVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~---~I~~v~~sp~~~~~las~s 391 (479)
..+..+..|...|++++|+|++..+|++|+.||.|++||++..+ .+..+.+|.. .|++++|+|+++.+|++++
T Consensus 151 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 226 (615)
T 1pgu_A 151 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK----FSASDRTHHKQGSFVRDVEFSPDSGEFVITVG 226 (615)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE----EEEEECSSSCTTCCEEEEEECSTTCCEEEEEE
T ss_pred CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc----eeeeecccCCCCceEEEEEECCCCCCEEEEEe
Confidence 26777889999999999999995599999999999999999887 7889999999 9999999997359999999
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-----cCCCCeeeEEEeCCCCcEEEEEcCCC-ceEE
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-----QGQKDLKELHWHTQVPGMIVSTAADG-FNIL 465 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-----~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw 465 (479)
.|+.|++||+.... .+... .+...|.+++|+ ++ .+|++++.++ |++|
T Consensus 227 ~dg~i~vwd~~~~~-------------------------~~~~~~~~~~~~~~~v~~~~~~-~~-~~l~~~~~d~~i~~w 279 (615)
T 1pgu_A 227 SDRKISCFDGKSGE-------------------------FLKYIEDDQEPVQGGIFALSWL-DS-QKFATVGADATIRVW 279 (615)
T ss_dssp TTCCEEEEETTTCC-------------------------EEEECCBTTBCCCSCEEEEEES-SS-SEEEEEETTSEEEEE
T ss_pred CCCeEEEEECCCCC-------------------------EeEEecccccccCCceEEEEEc-CC-CEEEEEcCCCcEEEE
Confidence 99999999998763 22222 233579999999 66 4777788777 9999
Q ss_pred eeecc
Q 039302 466 MPSNI 470 (479)
Q Consensus 466 ~~~~~ 470 (479)
++.+.
T Consensus 280 d~~~~ 284 (615)
T 1pgu_A 280 DVTTS 284 (615)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 98643
No 108
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=9.1e-28 Score=241.50 Aligned_cols=235 Identities=20% Similarity=0.368 Sum_probs=196.6
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
...+|...|+++.+ ++ .++++|+.||.|++||+.+ .+.+..+.+|...|.+++|
T Consensus 128 ~~~~~~~~v~~~~~--d~-~~l~~g~~dg~i~iwd~~~---------------------~~~~~~~~~h~~~v~~l~~-- 181 (435)
T 1p22_A 128 CRSETSKGVYCLQY--DD-QKIVSGLRDNTIKIWDKNT---------------------LECKRILTGHTGSVLCLQY-- 181 (435)
T ss_dssp CCCSSCCCEEEEEC--CS-SEEEEEESSSCEEEEESSS---------------------CCEEEEECCCSSCEEEEEC--
T ss_pred cccCCCCcEEEEEE--CC-CEEEEEeCCCeEEEEeCCC---------------------CeEEEEEcCCCCcEEEEEE--
Confidence 34467788999887 45 7899999999999999987 6778889999999999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce--eeEEe
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA--LMSFK 321 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~--~~~~~ 321 (479)
++. +|++|+.||.|++||+.++... ..+.+|...|.+++|++ . .+++|+.||.|++||+++.... ...+.
T Consensus 182 ~~~-~l~sg~~dg~i~vwd~~~~~~~----~~~~~h~~~v~~l~~~~--~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~ 253 (435)
T 1p22_A 182 DER-VIITGSSDSTVRVWDVNTGEML----NTLIHHCEAVLHLRFNN--G-MMVTCSKDRSIAVWDMASPTDITLRRVLV 253 (435)
T ss_dssp CSS-EEEEEETTSCEEEEESSSCCEE----EEECCCCSCEEEEECCT--T-EEEEEETTSCEEEEECSSSSCCEEEEEEC
T ss_pred CCC-EEEEEcCCCeEEEEECCCCcEE----EEEcCCCCcEEEEEEcC--C-EEEEeeCCCcEEEEeCCCCCCceeeeEec
Confidence 455 9999999999999999886542 44678999999999974 3 8999999999999999987532 25668
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+|...|++++|+ + .+|++|+.||.|++||+++.. ++..+.+|...|.++.|++ .+|++|+.||.|++||+
T Consensus 254 ~~~~~v~~~~~~--~-~~l~s~~~dg~i~vwd~~~~~----~~~~~~~~~~~v~~~~~~~---~~l~~g~~dg~i~iwd~ 323 (435)
T 1p22_A 254 GHRAAVNVVDFD--D-KYIVSASGDRTIKVWNTSTCE----FVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDI 323 (435)
T ss_dssp CCSSCEEEEEEE--T-TEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEET---TEEEEEETTSCEEEEET
T ss_pred CCCCcEEEEEeC--C-CEEEEEeCCCeEEEEECCcCc----EEEEEcCCCCcEEEEEeCC---CEEEEEeCCCeEEEEEC
Confidence 899999999993 4 799999999999999999987 8999999999999999963 79999999999999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+... .+....+| ..|.+++|+ + .+|++++.|| |++|++...
T Consensus 324 ~~~~-------------------------~~~~~~~h~~~v~~~~~~--~-~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 324 ECGA-------------------------CLRVLEGHEELVRCIRFD--N-KRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp TTCC-------------------------EEEEECCCSSCEEEEECC--S-SEEEEEETTSCEEEEEHHHH
T ss_pred CCCC-------------------------EEEEEeCCcCcEEEEEec--C-CEEEEEeCCCcEEEEECCCC
Confidence 8763 22222333 479999993 3 4788888888 999998654
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-28 Score=237.91 Aligned_cols=212 Identities=12% Similarity=0.093 Sum_probs=160.1
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCC--CC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNP--VA 245 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~--~~ 245 (479)
.+.|+++.++|. +++++.|++|++|+........... ....+..+. +|...|.+++|+| ++
T Consensus 76 ~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~~~~~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~ 139 (343)
T 3lrv_A 76 TPNPRTGGEHPA----IISRGPCNRLLLLYPGNQITILDSK------------TNKVLREIEVDSANEIIYMYGHNEVNT 139 (343)
T ss_dssp EECCCTTCCCCS----EEEECSTTEEEEEETTTEEEEEETT------------TCCEEEEEECCCSSCEEEEECCC---C
T ss_pred cCCceeeeeCCc----eEEecCCCeEEEEEccCceEEeecC------------CcceeEEeecCCCCCEEEEEcCCCCCC
Confidence 567888899886 8899999999999987532111000 123233333 6778999999999 88
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec-CC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA-HN 324 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~-h~ 324 (479)
. +|++|+.||.|++||+.++..... ....|...|++++|+|++. +|++|+.||.|+|||++++......+.. |.
T Consensus 140 ~-~l~s~s~dg~i~~wd~~~~~~~~~---~~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~ 214 (343)
T 3lrv_A 140 E-YFIWADNRGTIGFQSYEDDSQYIV---HSAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEE 214 (343)
T ss_dssp C-EEEEEETTCCEEEEESSSSCEEEE---ECCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTT
T ss_pred C-EEEEEeCCCcEEEEECCCCcEEEE---EecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCC
Confidence 7 999999999999999987654221 1234566799999999998 9999999999999999998643367777 99
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE--EEEEeCCCCCEEEEEeC-CCcEEEEEC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT--SIEWSPHEGSTLAVSSA-DNQLTIWDL 401 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~--~v~~sp~~~~~las~s~-Dg~I~iwdl 401 (479)
..|++++|+|++ .+|++|++ +.|++||+++.... ..+..+..|...+. +++|+|++ .+|++++. |+.|+||++
T Consensus 215 ~~v~~l~fs~~g-~~l~s~~~-~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~s~~d~~i~v~~~ 290 (343)
T 3lrv_A 215 AKIKEVKFADNG-YWMVVECD-QTVVCFDLRKDVGT-LAYPTYTIPEFKTGTVTYDIDDSG-KNMIAYSNESNSLTIYKF 290 (343)
T ss_dssp SCEEEEEECTTS-SEEEEEES-SBEEEEETTSSTTC-BSSCCCBC-----CCEEEEECTTS-SEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEEeCCC-CEEEEEeC-CeEEEEEcCCCCcc-eeecccccccccccceEEEECCCC-CEEEEecCCCCcEEEEEE
Confidence 999999999999 89999994 59999999988731 11222223444444 69999965 89999888 999999999
Q ss_pred CCCC
Q 039302 402 SLEK 405 (479)
Q Consensus 402 ~~~~ 405 (479)
....
T Consensus 291 ~~~~ 294 (343)
T 3lrv_A 291 DKKT 294 (343)
T ss_dssp CTTT
T ss_pred cccc
Confidence 7653
No 110
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.7e-28 Score=245.48 Aligned_cols=282 Identities=11% Similarity=0.049 Sum_probs=190.5
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc---cccccccccc------------------CCCC----Cc----
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHL---NALAESETVA------------------GHGA----PQ---- 219 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~---~~~~~~~~~~------------------~~~~----~~---- 219 (479)
..++++++|+|++. +|+++ .++.|++||+.... ....-..... .... ..
T Consensus 4 ~~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 4 IHPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp ECCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEEEECCC---------------------------------
T ss_pred cccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 35789999999995 66554 57899999986643 1000000000 0000 00
Q ss_pred -------cccCCCcEEecCCCCceEEEEeCCCCCCeE-EEEeCCCeEEEEecC--CCCccccCCCCcc--cCCCcEEEEE
Q 039302 220 -------VLNQSPLVKFGGHKDEGYAIDWNPVAPGRL-VSGDCNSCIHLWEPA--SDATWNVDPNPFI--GHAASVEDLQ 287 (479)
Q Consensus 220 -------~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l-~sg~~dg~I~lwd~~--~~~~~~~~~~~~~--~h~~~V~~l~ 287 (479)
.....+.....+|...|++++|+|++. +| ++|+.||.|+||++. ++... ..+. .|...|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~dg~v~iwd~~~~~~~~~----~~~~~~~~~~~v~~~~ 156 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES-RLIACADSDKSLLVFDVDKTSKNVL----KLRKRFCFSKRPNAIS 156 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSS-EEEEEEGGGTEEEEEEECSSSSSCE----EEEEEEECSSCEEEEE
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCC-EEEEEECCCCeEEEEECcCCCCcee----eeeecccCCCCceEEE
Confidence 000111223346777899999999998 75 899999999999998 54332 2232 5778999999
Q ss_pred ECCCCCcEEEEEeCCCcEEEEEcCCCCc---eeeEEecCCCCEEEEEEcCC---CCcEEEEEeCCCeEEEEeCCCCCCCC
Q 039302 288 WSPTESDVFASCSVDGNIAIWDTRVGKS---ALMSFKAHNADVNVISWNRL---ASCLLASGSDDGTFSIHDLRLLKGGD 361 (479)
Q Consensus 288 ~sp~~~~~l~s~s~dg~I~iwD~~~~~~---~~~~~~~h~~~v~~l~~~p~---~~~~l~sgs~dg~i~iwDlr~~~~~~ 361 (479)
|+|++. +|++|+.+|.|++|++..... +...+.+|...|++++|+|+ + .+|++|+.|+.|++||+++..
T Consensus 157 ~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~-~~l~s~~~d~~i~vwd~~~~~--- 231 (450)
T 2vdu_B 157 IAEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGH-QFIITSDRDEHIKISHYPQCF--- 231 (450)
T ss_dssp ECTTSS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSC-EEEEEEETTSCEEEEEESCTT---
T ss_pred EcCCCC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCC-cEEEEEcCCCcEEEEECCCCc---
Confidence 999998 999999999999999988752 22366789999999999999 6 899999999999999999877
Q ss_pred ceEEE-eecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee---cC
Q 039302 362 SVVAH-FEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH---QG 437 (479)
Q Consensus 362 ~~~~~-~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h---~g 437 (479)
.+.. +.+|...|++++|+ + +.+|++++.|+.|++||+........... . ............++..+... ..
T Consensus 232 -~~~~~~~~h~~~v~~~~~s-d-~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
T 2vdu_B 232 -IVDKWLFGHKHFVSSICCG-K-DYLLLSAGGDDKIFAWDWKTGKNLSTFDY-N-SLIKPYLNDQHLAPPRFQNENNDII 306 (450)
T ss_dssp -CEEEECCCCSSCEEEEEEC-S-TTEEEEEESSSEEEEEETTTCCEEEEEEC-H-HHHGGGCCTTSBC----------CB
T ss_pred -eeeeeecCCCCceEEEEEC-C-CCEEEEEeCCCeEEEEECCCCcEeeeecc-h-hhhhhhhhhcccccccccccccccc
Confidence 5665 66899999999999 4 59999999999999999987642100000 0 00000000000011000000 11
Q ss_pred CCCeeeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 438 QKDLKELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 438 ~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
...|.+++|+|++..+++++..++ |.||++
T Consensus 307 ~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 307 EFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp CCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred eEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 236999999999976666663666 999998
No 111
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.4e-29 Score=243.02 Aligned_cols=232 Identities=12% Similarity=0.117 Sum_probs=174.1
Q ss_pred cCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeE
Q 039302 179 SQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCI 258 (479)
Q Consensus 179 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I 258 (479)
+++ .++++|+.||+|++||+.. .+.+..+. ...|.++.|+|. +++|+.|++|
T Consensus 46 ~d~-~~l~sg~~Dg~v~iwd~~~---------------------~~~~~~~~--~~~v~~~~~~~~----~~s~s~D~~i 97 (343)
T 3lrv_A 46 YDK-WVCMCRCEDGALHFTQLKD---------------------SKTITTIT--TPNPRTGGEHPA----IISRGPCNRL 97 (343)
T ss_dssp EEE-EEEEEEEETTEEEEEEESS---------------------SSCEEEEE--EECCCTTCCCCS----EEEECSTTEE
T ss_pred CCC-CEEEEECCCCcEEEEECCC---------------------CcEEEEEe--cCCceeeeeCCc----eEEecCCCeE
Confidence 444 7899999999999999987 45555554 456788888886 9999999999
Q ss_pred EEEecCCCC------ccccCCCCcccCCCcEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCceeeEE-ecCCCCEEE
Q 039302 259 HLWEPASDA------TWNVDPNPFIGHAASVEDLQWSP--TESDVFASCSVDGNIAIWDTRVGKSALMSF-KAHNADVNV 329 (479)
Q Consensus 259 ~lwd~~~~~------~~~~~~~~~~~h~~~V~~l~~sp--~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~-~~h~~~v~~ 329 (479)
++|+..... ..........+|...|.+++|+| ++. +|++|+.||+|++||+++++ +.... ..|...|++
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~ 175 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDS-QYIVHSAKSDVEYSS 175 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSC-EEEEECCCSSCCCCE
T ss_pred EEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCc-EEEEEecCCCCceEE
Confidence 999875321 00000111235668999999999 888 99999999999999999886 44444 445668999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE-EEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVV-AHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~-~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
++|+|++ .+|++|+.||.|+|||+++.. .+ ..+.. |..+|++++|+|++ .+|++++ |+.|++||++.....
T Consensus 176 ~~~~pdg-~~lasg~~dg~i~iwd~~~~~----~~~~~~~~~h~~~v~~l~fs~~g-~~l~s~~-~~~v~iwd~~~~~~~ 248 (343)
T 3lrv_A 176 GVLHKDS-LLLALYSPDGILDVYNLSSPD----QASSRFPVDEEAKIKEVKFADNG-YWMVVEC-DQTVVCFDLRKDVGT 248 (343)
T ss_dssp EEECTTS-CEEEEECTTSCEEEEESSCTT----SCCEECCCCTTSCEEEEEECTTS-SEEEEEE-SSBEEEEETTSSTTC
T ss_pred EEECCCC-CEEEEEcCCCEEEEEECCCCC----CCccEEeccCCCCEEEEEEeCCC-CEEEEEe-CCeEEEEEcCCCCcc
Confidence 9999999 899999999999999999987 44 77888 99999999999965 8999999 559999999887421
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCC-CCe--eeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDL--KELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V--~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
..+..+..+ ..+ .+++|+|++..++++++.++ ++||++..
T Consensus 249 ----------------------~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 249 ----------------------LAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp ----------------------BSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ----------------------eeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcc
Confidence 001111111 123 46999999974444444255 99998743
No 112
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.96 E-value=4.7e-27 Score=224.99 Aligned_cols=241 Identities=20% Similarity=0.354 Sum_probs=198.1
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe--cCCCCceEEEEeCCCCCCeE
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF--GGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~~~~~~l 249 (479)
+++|+|++++ +||+|. |++|+|||+.+ ++.+..+ .+|...|++++|+|++. +|
T Consensus 28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~t---------------------g~~~~~~~~~~~~~~V~~v~~~~~~~-~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVAL-DNSVYLWSASS---------------------GDILQLLQMEQPGEYISSVAWIKEGN-YL 82 (318)
T ss_dssp CBCEEECTTS--EEEEEE-TTEEEEEETTT---------------------CCEEEEEECCSTTCCEEEEEECTTSS-EE
T ss_pred ceEEEECCCC--EEEEEe-CCEEEEEECCC---------------------CCEEEEEEecCCCCeEEEEEECCCCC-EE
Confidence 5889999876 788754 89999999987 4555544 46778999999999998 99
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
++|+.||+|++|++.++... ..+.+|...+.++.+. +. ++++++.++.+++|+.......+..+.+|...+..
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~----~~~~~h~~~~~~~~~~--~~-~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRL----RNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 155 (318)
T ss_dssp EEEETTSEEEEEETTTTEEE----EEEECCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred EEEECCCcEEEeecCCceeE----EEecCccceEEEeecC--CC-EEEEEecCCceEeeecCCCceeEEEEcCccCceEE
Confidence 99999999999999876542 4577899988887765 44 89999999999999999887677888999999999
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE--EEEeCCCcEEEEECCCCCCh
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL--AVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l--as~s~Dg~I~iwdl~~~~~~ 407 (479)
+.|++.+ .+|++++.||.|++||+++.+...........|...|.++.|+|.+..++ ++++.++.|++||.....
T Consensus 156 ~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~-- 232 (318)
T 4ggc_A 156 LRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGA-- 232 (318)
T ss_dssp EEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCC--
T ss_pred EEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccc--
Confidence 9999999 89999999999999999987654445677778999999999999877765 455678999999998763
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEE-cCCC-ceEEeeecc
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVST-AADG-FNILMPSNI 470 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~-~~dg-i~iw~~~~~ 470 (479)
..........+..+.|+|.+..+++++ +.|+ |+||++.+.
T Consensus 233 -----------------------~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~ 274 (318)
T 4ggc_A 233 -----------------------CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM 274 (318)
T ss_dssp -----------------------EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC
T ss_pred -----------------------ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC
Confidence 233344456799999999998766554 3566 999987654
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.5e-28 Score=242.95 Aligned_cols=262 Identities=8% Similarity=0.085 Sum_probs=190.5
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccc---------cccCCCCCccccCCCcEEec-CC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESE---------TVAGHGAPQVLNQSPLVKFG-GH 232 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~-~h 232 (479)
+........|.+|+|+|+| .++||++.|++|+ |.... ..+.... .....+.......+....+. .|
T Consensus 9 ~~~~~~~~~v~sv~~SpDG-~~iASas~D~TV~--d~~~~-~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~ 84 (588)
T 2j04_A 9 VDRKEFEDWKNNLTWARDG-TLYLTTFPDISIG--QPKYA-KDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQP 84 (588)
T ss_dssp ECSCCCSSSSCCEEECTTS-CEEEECSSSEEEE--EECCC-SCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSC
T ss_pred ccHhHhhccEEEEEECCCC-CEEEEEcCCceee--ccccc-ceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCC
Confidence 3445567899999999999 8999999999998 53322 1110000 00000000111112111222 55
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCC-----cEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA-----SVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~-----~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
...|.+++|+|+|. +||+++.||.|+||+... . ...+. |.. .|.+++|||+|+ +||+|+.||+|+|
T Consensus 85 ~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~----l~~l~-~~~~~~~~sv~svafSPDG~-~LAsgs~DGtVkI 155 (588)
T 2j04_A 85 VCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--M----LTNLD-SKGNLSSRTYHCFEWNPIES-SIVVGNEDGELQF 155 (588)
T ss_dssp SCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--E----EEECC-CSSCSTTTCEEEEEECSSSS-CEEEEETTSEEEE
T ss_pred CCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--e----eeecc-CCCccccccEEEEEEcCCCC-EEEEEcCCCEEEE
Confidence 77999999999998 999999999999999533 1 12234 444 599999999999 9999999999999
Q ss_pred EEcCCCCc------eeeEE----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ecCCCCeEE
Q 039302 308 WDTRVGKS------ALMSF----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTS 376 (479)
Q Consensus 308 wD~~~~~~------~~~~~----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~ 376 (479)
||+.++.. .+..+ .+|...|.+++|+|++ |++++.|++|++||+..... .....++ .+|...|.+
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~-~~~~~tL~~~h~~~V~s 231 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSH-QPVSRMIQNASRRKITD 231 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSS-CCCEEEEECCCSSCCCC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCcc-ccceeeecccccCcEEE
Confidence 99998742 24555 5677899999999987 78889999999999987662 1124566 478899999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEE--eCCCCcEE
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHW--HTQVPGMI 454 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w--~p~~~~ll 454 (479)
++|+ + ..||+++ +++|++||+.... ...+.++++..|.+++| +|++ ..+
T Consensus 232 vaFs--g-~~LASa~-~~tIkLWd~~~~~------------------------~~~~~~gh~~~V~~va~~~s~d~-~~L 282 (588)
T 2j04_A 232 LKIV--D-YKVVLTC-PGYVHKIDLKNYS------------------------ISSLKTGSLENFHIIPLNHEKES-TIL 282 (588)
T ss_dssp EEEE--T-TEEEEEC-SSEEEEEETTTTE------------------------EEEEECSCCSCCCEEEETTCSSC-EEE
T ss_pred EEEE--C-CEEEEEe-CCeEEEEECCCCe------------------------EEEEEcCCCceEEEEEeeeCCCC-CEE
Confidence 9999 4 8899887 6999999998763 11333344457999999 9998 478
Q ss_pred EEEcCCCceEEeeecc
Q 039302 455 VSTAADGFNILMPSNI 470 (479)
Q Consensus 455 ~s~~~dgi~iw~~~~~ 470 (479)
++++.+|.++|....+
T Consensus 283 a~a~edG~klw~~d~~ 298 (588)
T 2j04_A 283 LMSNKTSYKVLLEDEL 298 (588)
T ss_dssp EECSSCEEEEEESSSE
T ss_pred EEEcCCCCEEEeeccE
Confidence 8888777678876543
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.9e-28 Score=260.05 Aligned_cols=220 Identities=24% Similarity=0.335 Sum_probs=183.0
Q ss_pred eeEEEEecCCcceeEEEEecC--CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE
Q 039302 160 ILQLRKVAHQGCVNRIRAMSQ--NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY 237 (479)
Q Consensus 160 ~~~~~~~~H~~~V~~v~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 237 (479)
.....+.+|.+.|++++|+|+ + .+|++|+.||.|++||+... ....+..+.+|...|+
T Consensus 44 ~~~~~l~~h~~~V~~l~~s~~~~~-~~l~s~s~Dg~I~vwd~~~~-------------------~~~~~~~~~~h~~~V~ 103 (753)
T 3jro_A 44 KLIDTLTGHEGPVWRVDWAHPKFG-TILASCSYDGKVLIWKEENG-------------------RWSQIAVHAVHSASVN 103 (753)
T ss_dssp EEEEEECCCSSCEEEEEECCTTSC-SEEEEEETTSCEEEEEEETT-------------------EEEEEEEECCCSSCEE
T ss_pred ccceeccCCcCceEEEEecCCCCC-CEEEEEeCCCeEEEEECCCC-------------------cccccccccCCCCCeE
Confidence 344567899999999999987 5 79999999999999998862 1235677889999999
Q ss_pred EEEeCCC--CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC-------------CCcEEEEEeCC
Q 039302 238 AIDWNPV--APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT-------------ESDVFASCSVD 302 (479)
Q Consensus 238 ~l~~s~~--~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~-------------~~~~l~s~s~d 302 (479)
+++|+|+ +. .|++|+.||.|++||+.+..... ...+.+|...|.+++|+|. +. +|++|+.|
T Consensus 104 ~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~--~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~-~l~sgs~d 179 (753)
T 3jro_A 104 SVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS--PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESR-KFVTGGAD 179 (753)
T ss_dssp EEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCC--CEEEECCSSCEEEEEECCCC---------CGGGC-CEEEEETT
T ss_pred EEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcc--eeEeecCCCceEEEEecCcccccccccccCCCCC-EEEEEECC
Confidence 9999999 76 99999999999999998753322 2346789999999999995 55 89999999
Q ss_pred CcEEEEEcCCCC---ceeeEEecCCCCEEEEEEcCCC--CcEEEEEeCCCeEEEEeCCCCCCCC-ceEEEeecCCCCeEE
Q 039302 303 GNIAIWDTRVGK---SALMSFKAHNADVNVISWNRLA--SCLLASGSDDGTFSIHDLRLLKGGD-SVVAHFEYHKHPVTS 376 (479)
Q Consensus 303 g~I~iwD~~~~~---~~~~~~~~h~~~v~~l~~~p~~--~~~l~sgs~dg~i~iwDlr~~~~~~-~~~~~~~~h~~~I~~ 376 (479)
|.|++||+++.. .+...+.+|...|++++|+|++ +.+|++|+.||.|++||++...... ..+.....|...|++
T Consensus 180 g~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~ 259 (753)
T 3jro_A 180 NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWR 259 (753)
T ss_dssp SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCC
T ss_pred CeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEE
Confidence 999999999874 2455678899999999999993 3999999999999999999864211 123334568899999
Q ss_pred EEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 377 IEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 377 v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
++|+|++ .+|++|+.||.|++|++...
T Consensus 260 l~~spdg-~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 260 ASWSLSG-NVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp EEECTTT-CCEEEECSSSCEECCBCCSS
T ss_pred EEEcCCC-CEEEEEcCCCEEEEEecCCC
Confidence 9999965 89999999999999999853
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=2.3e-26 Score=227.35 Aligned_cols=242 Identities=11% Similarity=0.094 Sum_probs=189.8
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+...+.+++|+|++..++++++.++.|++||+.. .+.+..+..+. .+.+++|+|++.
T Consensus 29 ~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~---------------------~~~~~~~~~~~-~v~~~~~spdg~ 86 (391)
T 1l0q_A 29 PVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT---------------------NNVIATVPAGS-SPQGVAVSPDGK 86 (391)
T ss_dssp ECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTT---------------------TEEEEEEECSS-SEEEEEECTTSS
T ss_pred ecCCCcceEEECCCCCEEEEECCCCCeEEEEECCC---------------------CeEEEEEECCC-CccceEECCCCC
Confidence 34456999999999977778988999999999976 45566666555 899999999998
Q ss_pred CeE-EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 247 GRL-VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 247 ~~l-~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
+| ++++.++.|++||+.++.... .+. +...+.+++|+|+++.++++++.++.|++||+++++ .+..+..+ .
T Consensus 87 -~l~~~~~~~~~v~v~d~~~~~~~~----~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~~~-~ 158 (391)
T 1l0q_A 87 -QVYVTNMASSTLSVIDTTSNTVAG----TVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA-VINTVSVG-R 158 (391)
T ss_dssp -EEEEEETTTTEEEEEETTTTEEEE----EEE-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECC-S
T ss_pred -EEEEEECCCCEEEEEECCCCeEEE----EEe-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEecC-C
Confidence 66 556677999999998754321 222 345789999999998555888899999999999875 55555544 5
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe---CCCcEEEEECC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS---ADNQLTIWDLS 402 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s---~Dg~I~iwdl~ 402 (479)
.+.+++|+|++..++++++.++.|++||+++.. .+..+. +...+.+++|+|++ .+|++++ .++.|++||+.
T Consensus 159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~-~~~~~~~~~~~~~g-~~l~~~~~~~~~~~v~~~d~~ 232 (391)
T 1l0q_A 159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS----VIDTVK-VEAAPSGIAVNPEG-TKAYVTNVDKYFNTVSMIDTG 232 (391)
T ss_dssp SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----EEEEEE-CSSEEEEEEECTTS-SEEEEEEECSSCCEEEEEETT
T ss_pred CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe----EEEEEe-cCCCccceEECCCC-CEEEEEecCcCCCcEEEEECC
Confidence 679999999995555788899999999999876 566555 56789999999966 6677666 79999999998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
... .+.....+..+.+++|+|++..++++++.++ |++|++.+
T Consensus 233 ~~~-------------------------~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 233 TNK-------------------------ITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp TTE-------------------------EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred CCe-------------------------EEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 763 2222233456899999999987778888887 99998764
No 116
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.3e-26 Score=252.85 Aligned_cols=206 Identities=14% Similarity=0.128 Sum_probs=166.7
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
...|...|++++|+| + .+|++++.|++|+|||+.. .+.+.++. |...|++++|+|+
T Consensus 54 ~~~~~~~V~~l~fsp-g-~~L~S~s~D~~v~lWd~~~---------------------~~~~~~~~-~~~~V~~v~~sp~ 109 (902)
T 2oaj_A 54 KLEDRSAIKEMRFVK-G-IYLVVINAKDTVYVLSLYS---------------------QKVLTTVF-VPGKITSIDTDAS 109 (902)
T ss_dssp ECSSCCCEEEEEEET-T-TEEEEEETTCEEEEEETTT---------------------CSEEEEEE-CSSCEEEEECCTT
T ss_pred EcCCCCCEEEEEEcC-C-CEEEEEECcCeEEEEECCC---------------------CcEEEEEc-CCCCEEEEEECCC
Confidence 456889999999999 6 5899999999999999987 45666675 6679999999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCC-------CCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDP-------NPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~-------~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+. +|++|+.||.|++||+.+........ ..+.+|.+.|++++|+|++...|++|+.||.| +||+++.+ ++
T Consensus 110 g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~-~~ 186 (902)
T 2oaj_A 110 LD-WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE-IK 186 (902)
T ss_dssp CS-EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE-EE
T ss_pred CC-EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc-eE
Confidence 98 99999999999999998754311000 34578999999999999865589999999999 99999875 55
Q ss_pred eEEecC------------------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEE--e---ec-----
Q 039302 318 MSFKAH------------------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAH--F---EY----- 369 (479)
Q Consensus 318 ~~~~~h------------------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~--~---~~----- 369 (479)
..+..| ...|++++|+|++ .+||+|+.||.|++||+++++ ++.. + ..
T Consensus 187 ~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~lWd~~~g~----~~~~r~l~~~~~~~~~~ 261 (902)
T 2oaj_A 187 QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVFWDANSGH----MIMARTVFETEINVPQP 261 (902)
T ss_dssp EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEEEETTTCC----EEEEECSSCSCTTSCCT
T ss_pred EEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEEEECCCCc----EEEEEeecccccCCCCC
Confidence 566544 5779999999998 899999999999999999876 5543 2 11
Q ss_pred --------CCCCeEEEEEeC----CCCCEEEEEeCC-----CcEEEEECC
Q 039302 370 --------HKHPVTSIEWSP----HEGSTLAVSSAD-----NQLTIWDLS 402 (479)
Q Consensus 370 --------h~~~I~~v~~sp----~~~~~las~s~D-----g~I~iwdl~ 402 (479)
|..+|++++|+| +++.+|++|+.| ..|.+|++.
T Consensus 262 ~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~ 311 (902)
T 2oaj_A 262 DYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLG 311 (902)
T ss_dssp TCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEE
T ss_pred cCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecC
Confidence 355899999964 333678888776 379999864
No 117
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=9.3e-26 Score=220.68 Aligned_cols=256 Identities=14% Similarity=0.137 Sum_probs=180.9
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.+..+.+.+.+..++++++.+++|+|||+.. .+++..+. |...|.+++|+++ .++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~---------------------~~~~~~~~-~~~~v~~v~~~~~---~~~ 114 (355)
T 3vu4_A 60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVK---------------------KQDVSRIK-VDAPVKDLFLSRE---FIV 114 (355)
T ss_dssp CCCEEEECTTSSEEEEECSSTTEEEEEETTT---------------------TEEEEEEE-CSSCEEEEEECSS---EEE
T ss_pred CeEEEEEcCCCCEEEEEECCccEEEEEECCC---------------------CcEEEEEE-CCCceEEEEEcCC---EEE
Confidence 5888999998866667888899999999987 55666665 5669999999875 444
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEE--EeCCCcEEEEEcCCCC--------------
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFAS--CSVDGNIAIWDTRVGK-------------- 314 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s--~s~dg~I~iwD~~~~~-------------- 314 (479)
++. ++.|++||+.+.... ...+.. +...+++++ . +++. |+.||.|++||++++.
T Consensus 115 ~~~-~~~i~i~d~~~~~~~---~~~~~~---~~~~~~~s~--~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~ 184 (355)
T 3vu4_A 115 VSY-GDVISVFKFGNPWKR---ITDDIR---FGGVCEFSN--G-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI 184 (355)
T ss_dssp EEE-TTEEEEEESSTTCCB---SSCCEE---EEEEEEEET--T-EEEEEESSCTTCEEEEECCC----------------
T ss_pred EEE-cCEEEEEECCCCcee---eEEecc---CCceEEEEc--c-EEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence 444 789999999875221 122333 445566777 3 5665 5889999999999753
Q ss_pred ce-eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe-EEEEeCCCCCCCCceEEEee-c-CCCCeEEEEEeCCCCCEEEEE
Q 039302 315 SA-LMSFKAHNADVNVISWNRLASCLLASGSDDGT-FSIHDLRLLKGGDSVVAHFE-Y-HKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 315 ~~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~-i~iwDlr~~~~~~~~~~~~~-~-h~~~I~~v~~sp~~~~~las~ 390 (479)
.+ +..+.+|...|++++|+|++ .+||+|+.||+ |+|||+++++ ++..+. + |..+|++++|+|++ .+|+++
T Consensus 185 ~p~~~~~~~h~~~v~~~~~s~~g-~~l~s~s~d~~~v~iwd~~~~~----~~~~~~~g~h~~~v~~~~~s~~~-~~l~s~ 258 (355)
T 3vu4_A 185 LGKGVLIKAHTNPIKMVRLNRKS-DMVATCSQDGTIIRVFKTEDGV----LVREFRRGLDRADVVDMKWSTDG-SKLAVV 258 (355)
T ss_dssp --CCEEECCCSSCEEEEEECTTS-SEEEEEETTCSEEEEEETTTCC----EEEEEECTTCCSCEEEEEECTTS-CEEEEE
T ss_pred CcccEEEEccCCceEEEEECCCC-CEEEEEeCCCCEEEEEECCCCc----EEEEEEcCCCCCcEEEEEECCCC-CEEEEE
Confidence 12 67789999999999999998 99999999998 9999999988 788888 5 99999999999965 999999
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec-CCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-GQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
+.|++|+|||+........ ..+..... ................. .......++|++++. .+++++.|| +.+|.+.
T Consensus 259 s~d~~v~iw~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~-~l~~~~~dg~~~~~~~~ 335 (355)
T 3vu4_A 259 SDKWTLHVFEIFNDQDNKR-HALKGWIN-MKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS-LVVVWPHTRMIETFKVV 335 (355)
T ss_dssp ETTCEEEEEESSCCSCCCS-EETTTTEE-CCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE-EEEEETTTTEEEEEEEE
T ss_pred ECCCEEEEEEccCCCCccc-ccccceee-ccccccccceeEEEeccCCCCCceEEEEeCCCC-EEEEEeCCCeEEEEEEE
Confidence 9999999999986531100 00000000 00000000011111111 112357799999986 666666677 8888876
Q ss_pred cc
Q 039302 469 NI 470 (479)
Q Consensus 469 ~~ 470 (479)
.-
T Consensus 336 ~~ 337 (355)
T 3vu4_A 336 FD 337 (355)
T ss_dssp EE
T ss_pred cC
Confidence 53
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.9e-26 Score=231.16 Aligned_cols=243 Identities=13% Similarity=0.082 Sum_probs=193.4
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..+|.+.|++++|+|++ .++++++.++.|++||+.. .+.+..+..|...+.+++|+|+
T Consensus 165 ~~~~~~~v~~~~~~~~~-~~~~s~~~d~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~ 222 (433)
T 3bws_A 165 YKKKLGFVETISIPEHN-ELWVSQMQANAVHVFDLKT---------------------LAYKATVDLTGKWSKILLYDPI 222 (433)
T ss_dssp HHTTCCEEEEEEEGGGT-EEEEEEGGGTEEEEEETTT---------------------CCEEEEEECSSSSEEEEEEETT
T ss_pred ccccCCceeEEEEcCCC-EEEEEECCCCEEEEEECCC---------------------ceEEEEEcCCCCCeeEEEEcCC
Confidence 34789999999999888 7999999999999999986 5667788889999999999999
Q ss_pred CCCeE-EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe--------CCCcEEEEEcCCCCc
Q 039302 245 APGRL-VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS--------VDGNIAIWDTRVGKS 315 (479)
Q Consensus 245 ~~~~l-~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--------~dg~I~iwD~~~~~~ 315 (479)
+. +| ++++.++.|++||+.++.... .+.. ...+.+++|+|++. .+++++ .||.|++||+++++
T Consensus 223 ~~-~l~~~~~~~~~i~~~d~~~~~~~~----~~~~-~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~- 294 (433)
T 3bws_A 223 RD-LVYCSNWISEDISVIDRKTKLEIR----KTDK-IGLPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEK- 294 (433)
T ss_dssp TT-EEEEEETTTTEEEEEETTTTEEEE----ECCC-CSEEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTE-
T ss_pred CC-EEEEEecCCCcEEEEECCCCcEEE----EecC-CCCceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCc-
Confidence 98 66 566689999999997754321 2222 34699999999998 777776 58899999999874
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC---
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA--- 392 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~--- 392 (479)
.+. ...|...+.+++|+|++..++++++.++.|++||+++.+ .+..+. +...+.+++|+|++ .+|++++.
T Consensus 295 ~~~-~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~----~~~~~~-~~~~~~~~~~s~dg-~~l~~~~~~~~ 367 (433)
T 3bws_A 295 LID-TIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKK----VQKSIP-VFDKPNTIALSPDG-KYLYVSCRGPN 367 (433)
T ss_dssp EEE-EEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTE----EEEEEE-CSSSEEEEEECTTS-SEEEEEECCCC
T ss_pred EEe-eccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCc----EEEEec-CCCCCCeEEEcCCC-CEEEEEecCCC
Confidence 333 335566899999999996677888999999999999776 566665 67889999999965 77777765
Q ss_pred ------------CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 393 ------------DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 393 ------------Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
||.|++||+.... ++....++..+.+++|+|++..+++++..+
T Consensus 368 ~~~~~~~~~g~~dg~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d 422 (433)
T 3bws_A 368 HPTEGYLKKGLVLGKVYVIDTTTDT-------------------------VKEFWEAGNQPTGLDVSPDNRYLVISDFLD 422 (433)
T ss_dssp CTTTCTTSCCSSCCEEEEEETTTTE-------------------------EEEEEECSSSEEEEEECTTSCEEEEEETTT
T ss_pred ccccccccccccceEEEEEECCCCc-------------------------EEEEecCCCCCceEEEcCCCCEEEEEECCC
Confidence 5799999998763 233333346799999999998666666656
Q ss_pred C-ceEEeeec
Q 039302 461 G-FNILMPSN 469 (479)
Q Consensus 461 g-i~iw~~~~ 469 (479)
+ |.+|++..
T Consensus 423 ~~i~v~~~~~ 432 (433)
T 3bws_A 423 HQIRVYRRDG 432 (433)
T ss_dssp TEEEEEEETT
T ss_pred CeEEEEEecC
Confidence 6 99998754
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=5.3e-27 Score=232.79 Aligned_cols=208 Identities=16% Similarity=0.267 Sum_probs=152.1
Q ss_pred EEecCCcceeEEEEec--------CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc
Q 039302 164 RKVAHQGCVNRIRAMS--------QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE 235 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p--------~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 235 (479)
.+.+|.+.|++|+|+| ++ ++||||+.|++|+|||+.. ..++..+.+|...
T Consensus 131 ~~~gH~~~v~~v~~~p~~~~~~~~d~-~~las~s~D~tv~~Wd~~~---------------------~~~~~~~~~~~~~ 188 (393)
T 4gq1_A 131 GKSGHHNFVNDIDIADVYSADNRLAE-QVIASVGDDCTLIIWRLTD---------------------EGPILAGYPLSSP 188 (393)
T ss_dssp TTTSCSSCEEEEEEEEEECTTCSEEE-EEEEEEETTSEEEEEEEET---------------------TEEEEEEEECSSC
T ss_pred ccCCCCCceEEEEEccccccccCCCC-CEEEEEECCCeEEEEECCC---------------------CceeeeecCCCCC
Confidence 3568999999999998 45 8999999999999999976 4556677788899
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc---------------------CCCCcccCCCcEEEEEEC-CCCC
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV---------------------DPNPFIGHAASVEDLQWS-PTES 293 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~---------------------~~~~~~~h~~~V~~l~~s-p~~~ 293 (479)
|.+++|+|++..+|++|+.||+|++||+.++..... ......+|...|.++.|+ |++.
T Consensus 189 v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~ 268 (393)
T 4gq1_A 189 GISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGS 268 (393)
T ss_dssp EEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTC
T ss_pred cEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCC
Confidence 999999999865899999999999999987543110 011234688889999997 6776
Q ss_pred cEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEE-------------------EcCCCCcEEEEEeCCCeEEEEeC
Q 039302 294 DVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVIS-------------------WNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 294 ~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~-------------------~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.+++++.|+++++||++..+ ....+..|...+..+. +.+.+..++++|+.||.|+|||+
T Consensus 269 -~l~s~s~d~~i~vwd~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~ 346 (393)
T 4gq1_A 269 -GILAMCKSGAWLRWNLFANN-DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINT 346 (393)
T ss_dssp -EEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEET
T ss_pred -EEEEEeCCCCEEEEECccCC-CCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEEC
Confidence 99999999999999998764 3333333433333332 22334357788999999999999
Q ss_pred CCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 355 RLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 355 r~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.++. .+..+..|..+|++|+|+|++ ++||+++.+| +.+|.+
T Consensus 347 ~~~~----~~~~~~~~~~~V~svafspdG-~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 347 YEKD----SNSIPIQLGMPIVDFCWHQDG-SHLAIATEGS-VLLTRL 387 (393)
T ss_dssp TCTT----CCEEEEECSSCEEEEEECTTS-SEEEEEESSE-EEEEEE
T ss_pred CCCc----EEEEecCCCCcEEEEEEcCCC-CEEEEEeCCC-eEEEEE
Confidence 9887 567778899999999999965 9999998776 555655
No 120
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=2.9e-26 Score=223.65 Aligned_cols=253 Identities=17% Similarity=0.222 Sum_probs=192.2
Q ss_pred cCceeeEEEeeCCCCCCcccCCceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCc
Q 039302 70 GWPCLSFDILRDTLGLVRNEFPYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSD 149 (479)
Q Consensus 70 ~wP~ls~~~~~d~~~~~~~~~~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 149 (479)
.-+..++.|-|+... ..+|++|+ .++.|.||++..
T Consensus 39 ~~~v~~~~~~~~~~~--------g~~l~~~~-----~dg~i~iw~~~~-------------------------------- 73 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLP--------GNFLIAGS-----WANDVRCWEVQD-------------------------------- 73 (368)
T ss_dssp SSCEEEEEECCTTSS--------SEEEEEEE-----TTSEEEEEEECT--------------------------------
T ss_pred CCceEEEEEcCCCCC--------ceEEEEEC-----CCCcEEEEEcCC--------------------------------
Confidence 345667888887310 24677764 678999998831
Q ss_pred cccCCCCCCceeEEEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe
Q 039302 150 DEEEGGSGTPILQLRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF 229 (479)
Q Consensus 150 ~~~~~~~~~p~~~~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (479)
....+...+.+|.+.|++++|+|++ .+|++++.||.|++||+.. .+. ..+
T Consensus 74 -------~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~dg~v~iwd~~~---------------------~~~-~~~ 123 (368)
T 3mmy_A 74 -------SGQTIPKAQQMHTGPVLDVCWSDDG-SKVFTASCDKTAKMWDLSS---------------------NQA-IQI 123 (368)
T ss_dssp -------TSCEEEEEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEETTT---------------------TEE-EEE
T ss_pred -------CCceeEEEeccccCCEEEEEECcCC-CEEEEEcCCCcEEEEEcCC---------------------CCc-eee
Confidence 0123335678899999999999988 7888999999999999987 333 335
Q ss_pred cCCCCceEEEEe--CCCCCCeEEEEeCCCeEEEEecCCCCccccCC----------------------------------
Q 039302 230 GGHKDEGYAIDW--NPVAPGRLVSGDCNSCIHLWEPASDATWNVDP---------------------------------- 273 (479)
Q Consensus 230 ~~h~~~v~~l~~--s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~---------------------------------- 273 (479)
.+|...|.+++| ++++. +|++|+.||.|++||+.++.......
T Consensus 124 ~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 202 (368)
T 3mmy_A 124 AQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPS 202 (368)
T ss_dssp EECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCE
T ss_pred ccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccc
Confidence 679999999999 88887 89999999999999998754311100
Q ss_pred ---CCcccCCCcEEEEEECCCCC---cEEEEEeCCCcEEEEEcCCCC--ceeeEEecCCC------------CEEEEEEc
Q 039302 274 ---NPFIGHAASVEDLQWSPTES---DVFASCSVDGNIAIWDTRVGK--SALMSFKAHNA------------DVNVISWN 333 (479)
Q Consensus 274 ---~~~~~h~~~V~~l~~sp~~~---~~l~s~s~dg~I~iwD~~~~~--~~~~~~~~h~~------------~v~~l~~~ 333 (479)
.....+...+.++++.+... ..+++++.||.|++||++... .....+..|.. .|++++|+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 282 (368)
T 3mmy_A 203 EFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFH 282 (368)
T ss_dssp EEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEEC
T ss_pred hhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEe
Confidence 00001223344555544333 239999999999999999874 24566677765 79999999
Q ss_pred CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 334 RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 334 p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|++ .+|++|+.||.|++||+++.. ++..+..|..+|++++|+|++ .+|++++.|+..+.|++-..
T Consensus 283 p~~-~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~v~~~~~s~~g-~~l~~~s~d~~~~~~~~~~~ 347 (368)
T 3mmy_A 283 PVH-GTLATVGSDGRFSFWDKDART----KLKTSEQLDQPISACCFNHNG-NIFAYASSYDWSKGHEFYNP 347 (368)
T ss_dssp TTT-CCEEEEETTSCEEEEETTTTE----EEEECCCCSSCEEEEEECTTS-SCEEEEECCCSTTCGGGCCT
T ss_pred cCC-CEEEEEccCCeEEEEECCCCc----EEEEecCCCCCceEEEECCCC-CeEEEEecccccccccccCC
Confidence 998 899999999999999999887 789999999999999999965 89999999987666665443
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.95 E-value=4.2e-26 Score=223.14 Aligned_cols=241 Identities=10% Similarity=0.072 Sum_probs=172.7
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
...+|.+.|++++|+|++ .+||+|+.+| ++||++.. ........ ...+..++|.+
T Consensus 14 ~~~~h~~~V~~v~fs~dg-~~la~g~~~~-~~iw~~~~---------------------~~~~~~~~--~~~~~~~~~~~ 68 (355)
T 3vu4_A 14 PENHVSNPVTDYEFNQDQ-SCLILSTLKS-FEIYNVHP---------------------VAHIMSQE--MRHLSKVRMLH 68 (355)
T ss_dssp -----CCCCCEEEECTTS-SEEEEECSSE-EEEEEETT---------------------EEEEEEEE--CSCCCEEEECT
T ss_pred ccccCCCceEEEEECCCC-CEEEEEcCCE-EEEEecCC---------------------cceeeeee--cCCeEEEEEcC
Confidence 557899999999999999 7888988775 78999876 22222222 22477888888
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
.+...+++|+.|+.|+|||+.++.... .+ .|...|.+++|+++. ++++. |+.|++||+++....+..+..
T Consensus 69 ~~~~~~~~~~~d~~v~iWd~~~~~~~~----~~-~~~~~v~~v~~~~~~---~~~~~-~~~i~i~d~~~~~~~~~~~~~- 138 (355)
T 3vu4_A 69 RTNYVAFVTGVKEVVHIWDDVKKQDVS----RI-KVDAPVKDLFLSREF---IVVSY-GDVISVFKFGNPWKRITDDIR- 138 (355)
T ss_dssp TSSEEEEECSSTTEEEEEETTTTEEEE----EE-ECSSCEEEEEECSSE---EEEEE-TTEEEEEESSTTCCBSSCCEE-
T ss_pred CCCEEEEEECCccEEEEEECCCCcEEE----EE-ECCCceEEEEEcCCE---EEEEE-cCEEEEEECCCCceeeEEecc-
Confidence 887344678888999999998754422 22 356799999999763 44443 789999999987224444443
Q ss_pred CCCEEEEEEcCCCCcEEEE--EeCCCeEEEEeCCCCCCC-----------Cce-EEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 324 NADVNVISWNRLASCLLAS--GSDDGTFSIHDLRLLKGG-----------DSV-VAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~s--gs~dg~i~iwDlr~~~~~-----------~~~-~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
....+++++ .++++ |+.+|.|++||+++.... ..+ +..+.+|..+|++++|+|++ .+|++
T Consensus 139 --~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g-~~l~s 212 (355)
T 3vu4_A 139 --FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS-DMVAT 212 (355)
T ss_dssp --EEEEEEEET---TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS-SEEEE
T ss_pred --CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC-CEEEE
Confidence 445566777 34444 689999999999975410 012 77899999999999999955 99999
Q ss_pred EeCCCc-EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-c-CCCCeeeEEEeCCCCcEEEEEcCCC-ceEE
Q 039302 390 SSADNQ-LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-Q-GQKDLKELHWHTQVPGMIVSTAADG-FNIL 465 (479)
Q Consensus 390 ~s~Dg~-I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-~-g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw 465 (479)
|+.|++ |+|||++... .+.... . +...|++++|+|++. +|++++.|+ |+||
T Consensus 213 ~s~d~~~v~iwd~~~~~------------------------~~~~~~~g~h~~~v~~~~~s~~~~-~l~s~s~d~~v~iw 267 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGV------------------------LVREFRRGLDRADVVDMKWSTDGS-KLAVVSDKWTLHVF 267 (355)
T ss_dssp EETTCSEEEEEETTTCC------------------------EEEEEECTTCCSCEEEEEECTTSC-EEEEEETTCEEEEE
T ss_pred EeCCCCEEEEEECCCCc------------------------EEEEEEcCCCCCcEEEEEECCCCC-EEEEEECCCEEEEE
Confidence 999998 9999998763 122222 1 235799999999986 778888887 9999
Q ss_pred eeecc
Q 039302 466 MPSNI 470 (479)
Q Consensus 466 ~~~~~ 470 (479)
++...
T Consensus 268 ~~~~~ 272 (355)
T 3vu4_A 268 EIFND 272 (355)
T ss_dssp ESSCC
T ss_pred EccCC
Confidence 98643
No 122
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.5e-26 Score=219.07 Aligned_cols=199 Identities=14% Similarity=0.107 Sum_probs=147.5
Q ss_pred CCcceeEEEEecC----CCcEEEEEeC--------------------CceEEEEeCCCCcccccccccccCCCCCccccC
Q 039302 168 HQGCVNRIRAMSQ----NPHICASWAD--------------------TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQ 223 (479)
Q Consensus 168 H~~~V~~v~~~p~----~~~~lat~s~--------------------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (479)
|.+.|++|+++|+ + .++++++. |+.|++|++.. .+
T Consensus 110 ~~~~v~sla~spd~~~~~-~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~--------------------dG 168 (356)
T 2w18_A 110 EIREIRALFCSSDDESEK-QVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAE--------------------DG 168 (356)
T ss_dssp SEEEEEEECC------CC-EEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECT--------------------TS
T ss_pred cccceEEEEECCCccccc-cEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECC--------------------CC
Confidence 4567888888888 5 45555442 66666666644 35
Q ss_pred CCcEEecCCCCceEEEEeCC---CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccC---CCcEEEEEECCCCCcEE-
Q 039302 224 SPLVKFGGHKDEGYAIDWNP---VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGH---AASVEDLQWSPTESDVF- 296 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~---~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h---~~~V~~l~~sp~~~~~l- 296 (479)
+.+..+.+|...+..++|++ ++. +|++|+.|++|+|||+.+++.. ..+.+| ...|.+++|+|++. ++
T Consensus 169 ~~~~s~~~~~~~v~~l~fs~~~g~~~-~LaSgS~D~TIkIWDl~TGk~l----~tL~g~~~~v~~v~~vafSpdG~-~lv 242 (356)
T 2w18_A 169 GGKENQFLMPPEETILTFAEVQGMQE-ALLGTTIMNNIVIWNLKTGQLL----KKMHIDDSYQASVCHKAYSEMGL-LFI 242 (356)
T ss_dssp CEEEEEEECCCSSCEEEEEEEETSTT-EEEEEETTSEEEEEETTTCCEE----EEEECCC---CCCEEEEEEETTE-EEE
T ss_pred ceeeeeccCCCceeeEEeeccCCCCc-eEEEecCCCcEEEEECCCCcEE----EEEcCCCcceeeeEEEEECCCCC-EEE
Confidence 66777889999999999999 555 9999999999999999987653 234443 34688889999987 44
Q ss_pred -----------EEEeCCCcEEEEEcCCCCceeeEE-----ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC
Q 039302 297 -----------ASCSVDGNIAIWDTRVGKSALMSF-----KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG 360 (479)
Q Consensus 297 -----------~s~s~dg~I~iwD~~~~~~~~~~~-----~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~ 360 (479)
++|+.|++|++||..+++ .+..+ .+|...+.+..++ + .++|+|+.|++|+|||+++++
T Consensus 243 s~s~~~~~w~laSGs~D~tIklWd~~tgk-~l~v~~~~~p~Gh~~~~lsg~~s--g-~~lASgS~DgTIkIWDl~tGk-- 316 (356)
T 2w18_A 243 VLSHPCAKESESLRSPVFQLIVINPKTTL-SVGVMLYCLPPGQAGRFLEGDVK--D-HCAAAILTSGTIAIWDLLLGQ-- 316 (356)
T ss_dssp EEC------------CCEEEEEEETTTTE-EEEEEEECCCTTCCCCEEEEEEE--T-TEEEEEETTSCEEEEETTTCS--
T ss_pred EeccCCCcceeeccCCCcEEEEEECCCCE-EEEEEEeeccCCCcceeEccccC--C-CEEEEEcCCCcEEEEECCCCc--
Confidence 678899999999999875 33333 3566555555555 4 789999999999999999988
Q ss_pred CceEEEeecCCCCeE-EEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 361 DSVVAHFEYHKHPVT-SIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 361 ~~~~~~~~~h~~~I~-~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
.+.++.+|...+. +++|+|++ .+|++|+.|++|+|||+.
T Consensus 317 --~l~tL~gH~~~vvs~vafSPDG-~~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 317 --CTALLPPVSDQHWSFVKWSGTD-SHLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp --EEEEECCC--CCCCEEEECSSS-SEEEEECTTSCEEEEEEC
T ss_pred --EEEEecCCCCCeEEEEEECCCC-CEEEEEECCCcEEEecCC
Confidence 8999999987655 68999965 999999999999999963
No 123
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=7.1e-26 Score=227.69 Aligned_cols=197 Identities=11% Similarity=0.112 Sum_probs=160.6
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-----ceEEEEe
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-----EGYAIDW 241 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~ 241 (479)
.|...|.+++|+|+| .+||+++.||.|+|||... .+..+. |.. .+.+++|
T Consensus 83 ~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~-----------------------~l~~l~-~~~~~~~~sv~svaf 137 (588)
T 2j04_A 83 QPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK-----------------------MLTNLD-SKGNLSSRTYHCFEW 137 (588)
T ss_dssp SCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE-----------------------EEEECC-CSSCSTTTCEEEEEE
T ss_pred CCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc-----------------------eeeecc-CCCccccccEEEEEE
Confidence 668899999999999 7889999999999999543 334445 554 5999999
Q ss_pred CCCCCCeEEEEeCCCeEEEEecCCCCc-------cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 242 NPVAPGRLVSGDCNSCIHLWEPASDAT-------WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 242 s~~~~~~l~sg~~dg~I~lwd~~~~~~-------~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
||++. +||+|+.||+|+||++.++.. .........+|...|.+++|+|++ +++++.|++|++||+....
T Consensus 138 SPDG~-~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 138 NPIES-SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp CSSSS-CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSS
T ss_pred cCCCC-EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCc
Confidence 99998 999999999999999987532 011011236788999999999988 7888999999999998875
Q ss_pred c--eeeEE-ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE--eCCCCCEEEE
Q 039302 315 S--ALMSF-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW--SPHEGSTLAV 389 (479)
Q Consensus 315 ~--~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~--sp~~~~~las 389 (479)
. ....+ .+|...|.+++|+ + ..||+++ ++.|++||+.... ......+|...|++|+| +|++ ..|++
T Consensus 214 ~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~----~~~~~~gh~~~V~~va~~~s~d~-~~La~ 284 (588)
T 2j04_A 214 HQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYS----ISSLKTGSLENFHIIPLNHEKES-TILLM 284 (588)
T ss_dssp SCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTE----EEEEECSCCSCCCEEEETTCSSC-EEEEE
T ss_pred cccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCe----EEEEEcCCCceEEEEEeeeCCCC-CEEEE
Confidence 2 22345 4788999999999 5 7889887 6999999999876 42333389999999999 9955 89999
Q ss_pred EeCCCcEEEEECC
Q 039302 390 SSADNQLTIWDLS 402 (479)
Q Consensus 390 ~s~Dg~I~iwdl~ 402 (479)
++.||+ ++|.+.
T Consensus 285 a~edG~-klw~~d 296 (588)
T 2j04_A 285 SNKTSY-KVLLED 296 (588)
T ss_dssp CSSCEE-EEEESS
T ss_pred EcCCCC-EEEeec
Confidence 999999 999985
No 124
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.94 E-value=4.7e-25 Score=208.79 Aligned_cols=194 Identities=13% Similarity=0.145 Sum_probs=140.1
Q ss_pred CceEEEEeCCC----CCCeEEEEeC--------------------CCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC
Q 039302 234 DEGYAIDWNPV----APGRLVSGDC--------------------NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS 289 (479)
Q Consensus 234 ~~v~~l~~s~~----~~~~l~sg~~--------------------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s 289 (479)
.+|.+|+++|+ +. .+++++. |+.|++|++...+... ..+.+|...++.++|+
T Consensus 112 ~~v~sla~spd~~~~~~-~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~---~s~~~~~~~v~~l~fs 187 (356)
T 2w18_A 112 REIRALFCSSDDESEKQ-VLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGK---ENQFLMPPEETILTFA 187 (356)
T ss_dssp EEEEEECC------CCE-EEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEE---EEEEECCCSSCEEEEE
T ss_pred cceEEEEECCCcccccc-EEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCcee---eeeccCCCceeeEEee
Confidence 36778888888 55 6666553 7777788775433221 3355777788888888
Q ss_pred C---CCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC---CCEEEEEEcCCCCcEE------------EEEeCCCeEEE
Q 039302 290 P---TESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN---ADVNVISWNRLASCLL------------ASGSDDGTFSI 351 (479)
Q Consensus 290 p---~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~---~~v~~l~~~p~~~~~l------------~sgs~dg~i~i 351 (479)
| ++. +|++++.|++|+|||+++++ ++.++.+|. ..+.+++|+|++ .++ ++|+.|++|++
T Consensus 188 ~~~g~~~-~LaSgS~D~TIkIWDl~TGk-~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~~~w~laSGs~D~tIkl 264 (356)
T 2w18_A 188 EVQGMQE-ALLGTTIMNNIVIWNLKTGQ-LLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPCAKESESLRSPVFQLIV 264 (356)
T ss_dssp EEETSTT-EEEEEETTSEEEEEETTTCC-EEEEEECCC---CCCEEEEEEETT-EEEEEEC------------CCEEEEE
T ss_pred ccCCCCc-eEEEecCCCcEEEEECCCCc-EEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCCCcceeeccCCCcEEEE
Confidence 8 445 89999999999999999986 777777643 367788999988 554 67889999999
Q ss_pred EeCCCCCCCCceEEEe-----ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 352 HDLRLLKGGDSVVAHF-----EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 352 wDlr~~~~~~~~~~~~-----~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
||..++. .+..+ .+|...+.+..++ +.++++++.|++|+|||+.+++
T Consensus 265 Wd~~tgk----~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tGk--------------------- 316 (356)
T 2w18_A 265 INPKTTL----SVGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLGQ--------------------- 316 (356)
T ss_dssp EETTTTE----EEEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTCS---------------------
T ss_pred EECCCCE----EEEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCCc---------------------
Confidence 9999877 55554 3677666666665 4799999999999999999874
Q ss_pred CCCceEEeecCCC-Ce-eeEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 427 LPPQLLFIHQGQK-DL-KELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 427 ~p~~l~~~h~g~~-~V-~~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
++....+|. .+ ..++|+|+++ +|+|++.|+ |+||++
T Consensus 317 ----~l~tL~gH~~~vvs~vafSPDG~-~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 317 ----CTALLPPVSDQHWSFVKWSGTDS-HLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ----EEEEECCC--CCCCEEEECSSSS-EEEEECTTSCEEEEEE
T ss_pred ----EEEEecCCCCCeEEEEEECCCCC-EEEEEECCCcEEEecC
Confidence 333333443 34 4689999996 888899888 999986
No 125
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=1.1e-24 Score=218.19 Aligned_cols=246 Identities=12% Similarity=0.057 Sum_probs=190.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE-----EecCCCCceEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-----KFGGHKDEGYA 238 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~ 238 (479)
....+...+.+++|+| +..++++++.++.|++||+.. .+.+. .+.+|...|.+
T Consensus 117 ~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~---------------------g~~~~~~~~~~~~~~~~~v~~ 174 (433)
T 3bws_A 117 SRFKTGFQPKSVRFID-NTRLAIPLLEDEGMDVLDINS---------------------GQTVRLSPPEKYKKKLGFVET 174 (433)
T ss_dssp EEEECSSCBCCCEESS-SSEEEEEBTTSSSEEEEETTT---------------------CCEEEECCCHHHHTTCCEEEE
T ss_pred EEEcCCCCceEEEEeC-CCeEEEEeCCCCeEEEEECCC---------------------CeEeeecCcccccccCCceeE
Confidence 4445556678999999 548999989999999999986 23333 35688899999
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
++|++++. ++++++.|+.|++||+.++... ..+..|...+.+++|+|++..++++++.|+.|++||+++++ .+.
T Consensus 175 ~~~~~~~~-~~~s~~~d~~v~~~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~-~~~ 248 (433)
T 3bws_A 175 ISIPEHNE-LWVSQMQANAVHVFDLKTLAYK----ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL-EIR 248 (433)
T ss_dssp EEEGGGTE-EEEEEGGGTEEEEEETTTCCEE----EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-EEE
T ss_pred EEEcCCCE-EEEEECCCCEEEEEECCCceEE----EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc-EEE
Confidence 99999887 9999999999999999775442 33557888999999999999555677789999999999874 444
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEe--------CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGS--------DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs--------~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
.+.. ...+.+++|+|++ .+|++++ .||.|++||+++.+ .+..+ .|...+.+++|+|++..+++++
T Consensus 249 ~~~~-~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~----~~~~~-~~~~~~~~~~~~~~g~~l~~~~ 321 (433)
T 3bws_A 249 KTDK-IGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEK----LIDTI-GPPGNKRHIVSGNTENKIYVSD 321 (433)
T ss_dssp ECCC-CSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTE----EEEEE-EEEECEEEEEECSSTTEEEEEE
T ss_pred EecC-CCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCc----EEeec-cCCCCcceEEECCCCCEEEEEe
Confidence 4444 4569999999999 6777777 58899999999876 45544 4566899999999775677888
Q ss_pred eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC-----------
Q 039302 391 SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA----------- 459 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~----------- 459 (479)
+.|+.|++||+.... ++........+.+++|+|++..+++++..
T Consensus 322 ~~~~~v~v~d~~~~~-------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 376 (433)
T 3bws_A 322 MCCSKIEVYDLKEKK-------------------------VQKSIPVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKK 376 (433)
T ss_dssp TTTTEEEEEETTTTE-------------------------EEEEEECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSC
T ss_pred cCCCEEEEEECCCCc-------------------------EEEEecCCCCCCeEEEcCCCCEEEEEecCCCccccccccc
Confidence 999999999998653 22222233579999999999756665553
Q ss_pred ---CC-ceEEeeec
Q 039302 460 ---DG-FNILMPSN 469 (479)
Q Consensus 460 ---dg-i~iw~~~~ 469 (479)
|| |.+|++.+
T Consensus 377 g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 377 GLVLGKVYVIDTTT 390 (433)
T ss_dssp CSSCCEEEEEETTT
T ss_pred cccceEEEEEECCC
Confidence 34 88898754
No 126
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.93 E-value=1e-23 Score=208.22 Aligned_cols=227 Identities=10% Similarity=0.096 Sum_probs=176.3
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE-EEEeCCCeEEEE
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL-VSGDCNSCIHLW 261 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l-~sg~~dg~I~lw 261 (479)
.++++++.++.|++||+.. .+.+..+.+|. .+.+++|+|++. +| ++++.++.|++|
T Consensus 3 ~l~vs~~~d~~v~v~d~~~---------------------~~~~~~~~~~~-~~~~~~~s~dg~-~l~~~~~~d~~i~v~ 59 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS---------------------NKVTATIPVGS-NPMGAVISPDGT-KVYVANAHSNDVSII 59 (391)
T ss_dssp EEEEEETTTTEEEEEETTT---------------------TEEEEEEECSS-SEEEEEECTTSS-EEEEEEGGGTEEEEE
T ss_pred EEEEEcCCCCEEEEEECCC---------------------CeEEEEeecCC-CcceEEECCCCC-EEEEECCCCCeEEEE
Confidence 6889999999999999987 56666777665 589999999997 55 778899999999
Q ss_pred ecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEE
Q 039302 262 EPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLA 341 (479)
Q Consensus 262 d~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~ 341 (479)
|+.++... ..+..+ ..+.+++|+|+++.++++++.++.|++||+.+++ .+..+. +...+.+++|+|++..+++
T Consensus 60 d~~~~~~~----~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~ 132 (391)
T 1l0q_A 60 DTATNNVI----ATVPAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT-VAGTVK-TGKSPLGLALSPDGKKLYV 132 (391)
T ss_dssp ETTTTEEE----EEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEE-CSSSEEEEEECTTSSEEEE
T ss_pred ECCCCeEE----EEEECC-CCccceEECCCCCEEEEEECCCCEEEEEECCCCe-EEEEEe-CCCCcceEEECCCCCEEEE
Confidence 99775442 223333 3899999999999555667778999999999875 444454 4457899999999944558
Q ss_pred EEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhccccc
Q 039302 342 SGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQV 421 (479)
Q Consensus 342 sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 421 (479)
+++.++.|++||+++.+ .+..+..| ..+.+++|+|++..++++++.|+.|++||++...
T Consensus 133 ~~~~~~~v~~~d~~~~~----~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~---------------- 191 (391)
T 1l0q_A 133 TNNGDKTVSVINTVTKA----VINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS---------------- 191 (391)
T ss_dssp EETTTTEEEEEETTTTE----EEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE----------------
T ss_pred EeCCCCEEEEEECCCCc----EEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe----------------
Confidence 89999999999999877 67777765 4669999999774455788889999999998763
Q ss_pred CCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc--CCC-ceEEeeec
Q 039302 422 NAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA--ADG-FNILMPSN 469 (479)
Q Consensus 422 ~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~--~dg-i~iw~~~~ 469 (479)
......++..+.+++|+|++..+++++. .++ |.+|++.+
T Consensus 192 ---------~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~ 233 (391)
T 1l0q_A 192 ---------VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233 (391)
T ss_dssp ---------EEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT
T ss_pred ---------EEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC
Confidence 2222233457999999999976666664 445 99998754
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1e-22 Score=203.39 Aligned_cols=248 Identities=13% Similarity=0.092 Sum_probs=184.4
Q ss_pred CceeEEEEecCCcceeEEEEecC--------------CCcEEEEEeC--C---ceEEEEeCCCCcccccccccccCCCCC
Q 039302 158 TPILQLRKVAHQGCVNRIRAMSQ--------------NPHICASWAD--T---GHVQVWDFRSHLNALAESETVAGHGAP 218 (479)
Q Consensus 158 ~p~~~~~~~~H~~~V~~v~~~p~--------------~~~~lat~s~--d---g~V~iwd~~~~~~~~~~~~~~~~~~~~ 218 (479)
+.+....+.+|...+.++++.+. +..++.++.. + +.|++||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g----------------- 168 (415)
T 2hqs_A 106 TVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG----------------- 168 (415)
T ss_dssp CEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-----------------
T ss_pred CEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-----------------
Confidence 33444568899999988888752 4344444333 2 7999999875
Q ss_pred ccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCC---eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcE
Q 039302 219 QVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNS---CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDV 295 (479)
Q Consensus 219 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg---~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~ 295 (479)
.....+.+|...+.+++|+|++. +|++++.++ .|++||+.++.. ..+..|...+.+++|+|+++.+
T Consensus 169 -----~~~~~l~~~~~~v~~~~~Spdg~-~la~~s~~~~~~~i~~~d~~tg~~-----~~l~~~~~~~~~~~~spdg~~l 237 (415)
T 2hqs_A 169 -----YNQFVVHRSPQPLMSPAWSPDGS-KLAYVTFESGRSALVIQTLANGAV-----RQVASFPRHNGAPAFSPDGSKL 237 (415)
T ss_dssp -----CSCEEEEEESSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTTCCE-----EEEECCSSCEEEEEECTTSSEE
T ss_pred -----CCCEEEeCCCCcceeeEEcCCCC-EEEEEEecCCCcEEEEEECCCCcE-----EEeecCCCcccCEEEcCCCCEE
Confidence 33566778899999999999998 999998875 999999987644 2355677899999999999944
Q ss_pred EEEEeCCCc--EEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC-CC--eEEEEeCCCCCCCCceEEEeecC
Q 039302 296 FASCSVDGN--IAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSD-DG--TFSIHDLRLLKGGDSVVAHFEYH 370 (479)
Q Consensus 296 l~s~s~dg~--I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~-dg--~i~iwDlr~~~~~~~~~~~~~~h 370 (479)
+++++.++. |++||+++++ ...+..|...+.+++|+|++ ..|++++. ++ .|++||+.... ...+..|
T Consensus 238 a~~~~~~g~~~i~~~d~~~~~--~~~l~~~~~~~~~~~~spdg-~~l~~~s~~~g~~~i~~~d~~~~~-----~~~l~~~ 309 (415)
T 2hqs_A 238 AFALSKTGSLNLYVMDLASGQ--IRQVTDGRSNNTEPTWFPDS-QNLAFTSDQAGRPQVYKVNINGGA-----PQRITWE 309 (415)
T ss_dssp EEEECTTSSCEEEEEETTTCC--EEECCCCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSSC-----CEECCCS
T ss_pred EEEEecCCCceEEEEECCCCC--EEeCcCCCCcccceEECCCC-CEEEEEECCCCCcEEEEEECCCCC-----EEEEecC
Confidence 447776665 9999999875 35677788899999999999 66776665 45 67888988765 3445667
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe
Q 039302 371 KHPVTSIEWSPHEGSTLAVSSAD---NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH 447 (479)
Q Consensus 371 ~~~I~~v~~sp~~~~~las~s~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~ 447 (479)
...+.+++|+|++ .+|++++.+ ..|.+||+.... +..... +..+.+++|+
T Consensus 310 ~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~-------------------------~~~l~~-~~~~~~~~~s 362 (415)
T 2hqs_A 310 GSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG-------------------------VQVLSS-TFLDETPSLA 362 (415)
T ss_dssp SSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCC-------------------------EEECCC-SSSCEEEEEC
T ss_pred CCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCC-------------------------EEEecC-CCCcCCeEEc
Confidence 7889999999966 777777654 589999998763 111112 2379999999
Q ss_pred CCCCcEEEEEcCCC---ceEEeee
Q 039302 448 TQVPGMIVSTAADG---FNILMPS 468 (479)
Q Consensus 448 p~~~~ll~s~~~dg---i~iw~~~ 468 (479)
|++..+++++.+++ |.+|++.
T Consensus 363 pdg~~l~~~s~~~~~~~l~~~d~~ 386 (415)
T 2hqs_A 363 PNGTMVIYSSSQGMGSVLNLVSTD 386 (415)
T ss_dssp TTSSEEEEEEEETTEEEEEEEETT
T ss_pred CCCCEEEEEEcCCCccEEEEEECC
Confidence 99986666666554 6666653
No 128
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.91 E-value=2.5e-22 Score=189.17 Aligned_cols=241 Identities=10% Similarity=0.017 Sum_probs=172.8
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-CCceEEEEeC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-KDEGYAIDWN 242 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~s 242 (479)
.+..|.+.|.+++|+|++ .+|++++ ++.|++||+... .+....+.+| ...+.+++|+
T Consensus 36 ~~~~~~~~v~~~~~spdg-~~l~~~~-~~~i~~~d~~~~--------------------~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 36 VVWQTPELFEAPNWSPDG-KYLLLNS-EGLLYRLSLAGD--------------------PSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp EEEEESSCCEEEEECTTS-SEEEEEE-TTEEEEEESSSC--------------------CSCEECCCTTCCCBCSCCEEC
T ss_pred eeccCCcceEeeEECCCC-CEEEEEc-CCeEEEEeCCCC--------------------CCceEeccccccccccceEEC
Confidence 566789999999999999 5666655 789999998751 2233333444 3678999999
Q ss_pred CCCCCeEEEEe--CCCeEEEEec--CCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 243 PVAPGRLVSGD--CNSCIHLWEP--ASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 243 ~~~~~~l~sg~--~dg~I~lwd~--~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
|++. +|++++ .++.+.||.+ .++.. ..+..+ ..+..++|+|+++.++++++.++.++||+++.......
T Consensus 94 pdg~-~l~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 94 PDGA-LYAISDKVEFGKSAIYLLPSTGGTP-----RLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp TTSS-EEEEEECTTTSSCEEEEEETTCCCC-----EECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred CCCC-EEEEEEeCCCCcceEEEEECCCCce-----EEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcce
Confidence 9998 888888 3345555554 33221 122222 34899999999995555888899999999754333455
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEE-EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC----
Q 039302 319 SFKAHNADVNVISWNRLASCLLAS-GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD---- 393 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~s-gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D---- 393 (479)
.+..+...+.+++|+|++ .+|++ +..++.++||++..... .+..+..|...+.+++|+|++ .+|++++.+
T Consensus 167 ~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGS---SVERITDSAYGDWFPHPSPSG-DKVVFVSYDADVF 241 (297)
T ss_dssp ECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS---CEEECCCCSEEEEEEEECTTS-SEEEEEEEETTCC
T ss_pred EcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCC---CcEEEecCCcccCCeEECCCC-CEEEEEEcCCCCC
Confidence 667788899999999999 55554 44689999999873332 577788888899999999965 777777765
Q ss_pred -------CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 394 -------NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 394 -------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
+.|.+||+..... ..+.....+...+..++|+|++..+++++.++
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~----------------------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNV----------------------ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSC----------------------EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCc----------------------eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 5699999987631 12222223335799999999998666666554
No 129
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.90 E-value=2.2e-21 Score=193.62 Aligned_cols=222 Identities=10% Similarity=0.018 Sum_probs=168.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCc---eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTG---HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg---~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
.+.+|.+.|.+++|+|++ ..||+++.++ .|++||+.. .+. ..+..|...+.+++
T Consensus 173 ~l~~~~~~v~~~~~Spdg-~~la~~s~~~~~~~i~~~d~~t---------------------g~~-~~l~~~~~~~~~~~ 229 (415)
T 2hqs_A 173 VVHRSPQPLMSPAWSPDG-SKLAYVTFESGRSALVIQTLAN---------------------GAV-RQVASFPRHNGAPA 229 (415)
T ss_dssp EEEEESSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTT---------------------CCE-EEEECCSSCEEEEE
T ss_pred EEeCCCCcceeeEEcCCC-CEEEEEEecCCCcEEEEEECCC---------------------CcE-EEeecCCCcccCEE
Confidence 566789999999999999 5677777765 999999986 333 35667888999999
Q ss_pred eCCCCCCeEE-EEeCCCe--EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-CC--cEEEEEcCCCC
Q 039302 241 WNPVAPGRLV-SGDCNSC--IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-DG--NIAIWDTRVGK 314 (479)
Q Consensus 241 ~s~~~~~~l~-sg~~dg~--I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-dg--~I~iwD~~~~~ 314 (479)
|+|++. +|+ +++.++. |++||+.++.. ..+..|...+.+++|+|+++ .|++++. ++ .|.+||+.++.
T Consensus 230 ~spdg~-~la~~~~~~g~~~i~~~d~~~~~~-----~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 230 FSPDGS-KLAFALSKTGSLNLYVMDLASGQI-----RQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp ECTTSS-EEEEEECTTSSCEEEEEETTTCCE-----EECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC
T ss_pred EcCCCC-EEEEEEecCCCceEEEEECCCCCE-----EeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC
Confidence 999998 677 6766654 99999977543 33566788999999999998 6776665 45 67777888764
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
...+..+...+.+++|+|++ .+|++++.+ ..|++||+.+.. . ..+..|. .+.+++|+|++ .+|++++
T Consensus 303 --~~~l~~~~~~~~~~~~spdG-~~l~~~~~~~g~~~i~~~d~~~~~----~-~~l~~~~-~~~~~~~spdg-~~l~~~s 372 (415)
T 2hqs_A 303 --PQRITWEGSQNQDADVSSDG-KFMVMVSSNGGQQHIAKQDLATGG----V-QVLSSTF-LDETPSLAPNG-TMVIYSS 372 (415)
T ss_dssp --CEECCCSSSEEEEEEECTTS-SEEEEEEECSSCEEEEEEETTTCC----E-EECCCSS-SCEEEEECTTS-SEEEEEE
T ss_pred --EEEEecCCCcccCeEECCCC-CEEEEEECcCCceEEEEEECCCCC----E-EEecCCC-CcCCeEEcCCC-CEEEEEE
Confidence 34455677789999999999 667666653 589999998766 3 4555554 89999999966 7888877
Q ss_pred CCC---cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 392 ADN---QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 392 ~Dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
.++ .|++||+.... +.....+...|.+++|+|..
T Consensus 373 ~~~~~~~l~~~d~~g~~-------------------------~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 373 SQGMGSVLNLVSTDGRF-------------------------KARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp EETTEEEEEEEETTSCC-------------------------EEECCCSSSEEEEEEECCCC
T ss_pred cCCCccEEEEEECCCCc-------------------------EEEeeCCCCCCcCCcccccc
Confidence 776 79999987442 22222223579999999965
No 130
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=4.6e-22 Score=199.57 Aligned_cols=219 Identities=15% Similarity=0.155 Sum_probs=157.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...++.+++++.+ .++++++.+| |+||+.......... ...........+...+ .+...|.+++|+|++. +
T Consensus 36 ~~~~n~lavs~~~-~~l~~~~~dg-v~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~-~ 106 (434)
T 2oit_A 36 KERSSLLAVSNKY-GLVFAGGASG-LQIFPTKNLLIQNKP-----GDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNL-T 106 (434)
T ss_dssp CSCCBCEEEETTT-TEEEEEETTE-EEEEEHHHHCCCCCT-----TCCTTCEEECCCCEEE-CCSSCEEEEEECTTSC-E
T ss_pred CCCccEEEEecCC-CEEEEECCCE-EEEEEchHhhhhccc-----ccCcccccccCccccc-cCCCcccEEEEcCCCC-E
Confidence 3468999999988 6777888888 999886532110000 0000000011222233 4567899999999998 8
Q ss_pred EE----EEeCCCeEEEEecCCC-----Cc--cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 249 LV----SGDCNSCIHLWEPASD-----AT--WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 249 l~----sg~~dg~I~lwd~~~~-----~~--~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
|+ +|+.|+.|+|||+.+. .. .......+.+|...|.+++|+|++.++|++++.||+|++||+++.. .+
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~-~~ 185 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV-KV 185 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE-EE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc-ce
Confidence 88 7889999999998653 11 0001234667999999999999855599999999999999999874 45
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------CCCeEEEEEeCCCCCEEE-E
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------KHPVTSIEWSPHEGSTLA-V 389 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------~~~I~~v~~sp~~~~~la-s 389 (479)
.....|...|++++|+|++ .+|++|+.||.|++||++ +. ....+..| ...|.+++|+++. .+++ .
T Consensus 186 ~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~-~~----~~~~~~~~~~~~~~~~~~v~~v~w~~~~-~~l~~~ 258 (434)
T 2oit_A 186 CATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT-LQ----EKKVIPCPPFYESDHPVRVLDVLWIGTY-VFAIVY 258 (434)
T ss_dssp EEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT-CC----EEEEECCCTTCCTTSCEEEEEEEEEETT-EEEEEE
T ss_pred eeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC-Cc----ccccccCCcccCCCCceeEEEEEEecCc-eEEEEE
Confidence 5567788999999999998 899999999999999998 43 44555443 2389999999955 4443 3
Q ss_pred EeCCCc------EEEEECCCC
Q 039302 390 SSADNQ------LTIWDLSLE 404 (479)
Q Consensus 390 ~s~Dg~------I~iwdl~~~ 404 (479)
++.||. +++|+++..
T Consensus 259 ~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 259 AAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EETTCCSSSCCEEEEEECCCT
T ss_pred ccCCCccCCCCceEEEEeccC
Confidence 444543 899999875
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=8.2e-21 Score=183.27 Aligned_cols=263 Identities=8% Similarity=0.022 Sum_probs=171.7
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN 242 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 242 (479)
.....|...+.+++|+|++..+++++..++.|.+|++..... ....+..+..+. .+.+++|+
T Consensus 31 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~-----------------~~~~~~~~~~~~-~~~~~~~s 92 (343)
T 1ri6_A 31 TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG-----------------ALTFAAESALPG-SLTHISTD 92 (343)
T ss_dssp EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-----------------CEEEEEEEECSS-CCSEEEEC
T ss_pred eeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC-----------------ceeeccccccCC-CCcEEEEc
Confidence 455678899999999999955555544459999999973100 112333444444 78899999
Q ss_pred CCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCC-CCce-ee
Q 039302 243 PVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRV-GKSA-LM 318 (479)
Q Consensus 243 ~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~-~~~~-~~ 318 (479)
|++. +|++++ .++.|.+|++..+.... ....+. ....+.+++|+|+++ .+++++ .++.|.+||+.+ ++.. ..
T Consensus 93 ~dg~-~l~~~~~~~~~i~~~d~~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~~ 168 (343)
T 1ri6_A 93 HQGQ-FVFVGSYNAGNVSVTRLEDGLPVG-VVDVVE-GLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQD 168 (343)
T ss_dssp TTSS-EEEEEETTTTEEEEEEEETTEEEE-EEEEEC-CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred CCCC-EEEEEecCCCeEEEEECCCCcccc-cccccc-CCCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceeeec
Confidence 9998 666555 48899999995221111 011222 234588999999998 555555 899999999987 4311 11
Q ss_pred --EEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec---C---CCCeEEEEEeCCCCCEEEE
Q 039302 319 --SFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY---H---KHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 319 --~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~---h---~~~I~~v~~sp~~~~~las 389 (479)
.+. .....+..++|+|++..+++++..++.|.+||+............+.. . ...+..++|+|++..++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~ 248 (343)
T 1ri6_A 169 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYAC 248 (343)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEE
T ss_pred ccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEE
Confidence 222 234578899999999445566668999999999642211112333321 1 2357789999976444456
Q ss_pred EeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 390 SSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
+..++.|.+|++..... ....+.....+..+..++|+|++..+++++..++ +.+|++.
T Consensus 249 ~~~~~~i~v~d~~~~~~---------------------~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 249 DRTASLITVFSVSEDGS---------------------VLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp ETTTTEEEEEEECTTSC---------------------CEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ecCCCEEEEEEEcCCCC---------------------ceEEeeeecCCCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 66899999999984210 0122222222234899999999986777765666 9999664
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.88 E-value=5.1e-20 Score=177.35 Aligned_cols=253 Identities=7% Similarity=0.007 Sum_probs=176.8
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCC-cEEecCCCCceEEEEeCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSP-LVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~s~~~ 245 (479)
.+...+ .++|+|++..+++++..++.|.+||+.. .+. ...+..+..+..+++|+|++
T Consensus 38 ~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~s~dg 95 (331)
T 3u4y_A 38 LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL---------------------EPPKVVAIQEGQSSMADVDITPDD 95 (331)
T ss_dssp CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS---------------------SSCEEEEEEECSSCCCCEEECTTS
T ss_pred ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC---------------------CceeEEecccCCCCccceEECCCC
Confidence 445566 9999999976777777799999999987 344 55666666666669999999
Q ss_pred CCeEEEEeCCC---eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc-EEEEEcCCCCcee---e
Q 039302 246 PGRLVSGDCNS---CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN-IAIWDTRVGKSAL---M 318 (479)
Q Consensus 246 ~~~l~sg~~dg---~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~-I~iwD~~~~~~~~---~ 318 (479)
. +|+++..++ .|.+||+.++.... .+ .+.....+++|+|+++.+++++..++. |.+|++....... .
T Consensus 96 ~-~l~~~~~~~~~~~i~v~d~~~~~~~~----~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~ 169 (331)
T 3u4y_A 96 Q-FAVTVTGLNHPFNMQSYSFLKNKFIS----TI-PIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ 169 (331)
T ss_dssp S-EEEECCCSSSSCEEEEEETTTTEEEE----EE-ECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE
T ss_pred C-EEEEecCCCCcccEEEEECCCCCeEE----EE-ECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC
Confidence 8 888555453 89999997754322 12 233457899999999867777777788 9999998653211 1
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
...........++|+|++..+++++..++.|.+||+.+.+. ...+..+.. ...+..++|+|++..++++...++.|.+
T Consensus 170 ~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~-~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~~~~~i~~ 247 (331)
T 3u4y_A 170 EFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN-ITLLNAVGT-NNLPGTIVVSRDGSTVYVLTESTVDVFN 247 (331)
T ss_dssp EEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS-CEEEEEEEC-SSCCCCEEECTTSSEEEEECSSEEEEEE
T ss_pred ccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc-cceeeeccC-CCCCceEEECCCCCEEEEEEcCCCEEEE
Confidence 22234566899999999954667777889999999987761 011666664 4667899999976334455556889999
Q ss_pred EECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee----cC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 399 WDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH----QG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 399 wdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h----~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
||+....... ...+..+ .. ...+..++|+|++..+++++..++ |.+|++..
T Consensus 248 ~d~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 248 FNQLSGTLSF--------------------VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp EETTTTEEEE--------------------EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred EECCCCceee--------------------ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 9998763100 0000000 10 012356899999987778887776 99998754
No 133
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.88 E-value=4.4e-20 Score=179.33 Aligned_cols=293 Identities=7% Similarity=0.056 Sum_probs=193.6
Q ss_pred eEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCcce
Q 039302 93 TAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQGCV 172 (479)
Q Consensus 93 ~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~~V 172 (479)
..++.+|+.+.+ ....|+||.+.. + ...........+...+
T Consensus 2 ~~~~~vg~y~~~-~~~~i~v~~~d~-------------------------------~-------tg~~~~~~~~~~~~~p 42 (347)
T 3hfq_A 2 QERILFGTYTKK-TSQGIYQGTLDT-------------------------------T-------AKTLTNDGLLAATQNP 42 (347)
T ss_dssp EEEEEEEECCSS-SCCEEEEEEEET-------------------------------T-------TTEEEEEEEEEECSCC
T ss_pred CcEEEEEeccCC-CCCCEEEEEEcC-------------------------------C-------CCeEEEeeeeeccCCc
Confidence 356778888764 456799998821 0 0112223456677888
Q ss_pred eEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 173 NRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
..++|+|++. ++++... ++.|++|++... ..+.+..+..+...+..++|+|++. +|+
T Consensus 43 ~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g-------------------~~~~~~~~~~~~~~p~~~a~spdg~-~l~ 101 (347)
T 3hfq_A 43 TYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ-------------------TAHKLNTVVAPGTPPAYVAVDEARQ-LVY 101 (347)
T ss_dssp CCEEECTTCE-EEEEEEETTEEEEEEEEEETT-------------------EEEEEEEEEEESCCCSEEEEETTTT-EEE
T ss_pred ceEEEccCCe-EEEEEecCCCceEEEEEecCC-------------------cEEEeeeeecCCCCCEEEEECCCCC-EEE
Confidence 9999999995 6666543 689999999641 1223444455667888999999998 788
Q ss_pred EEe-CCCeEEEEecCCCCccccCCC-Ccc-------cCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-CCc-eeeE
Q 039302 251 SGD-CNSCIHLWEPASDATWNVDPN-PFI-------GHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV-GKS-ALMS 319 (479)
Q Consensus 251 sg~-~dg~I~lwd~~~~~~~~~~~~-~~~-------~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~-~~~-~~~~ 319 (479)
+++ .++.|.+|++...+....... ... .+...+.+++|+|+++ +++++..++.|++||+.. +.. ....
T Consensus 102 ~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~ 180 (347)
T 3hfq_A 102 SANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSV 180 (347)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEE
T ss_pred EEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeee
Confidence 777 789999999964332111000 011 1234588999999999 888888899999999983 321 1112
Q ss_pred Eec-CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC------CCeEEEEEeCCCCCEEEEEeC
Q 039302 320 FKA-HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK------HPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 320 ~~~-h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~------~~I~~v~~sp~~~~~las~s~ 392 (479)
+.. ....+..++|+|++..+++++..++.|.+|++.........+..+.... ..+..++|+|++..+++++..
T Consensus 181 ~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~ 260 (347)
T 3hfq_A 181 LTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG 260 (347)
T ss_dssp EECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET
T ss_pred EEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC
Confidence 222 2346788999999944666677889999999875221011233333332 358899999976334466777
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-QKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
++.|.+|++..... ...+..... ...+..++|+|++..++++...++ +.+|++.
T Consensus 261 ~~~v~v~~~~~~g~----------------------~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 261 YNTLAVFAVTADGH----------------------LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp TTEEEEEEECGGGC----------------------EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCEEEEEEECCCCc----------------------EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 99999999974311 022222222 245899999999986766666655 9999663
No 134
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=6.1e-20 Score=189.21 Aligned_cols=253 Identities=9% Similarity=0.112 Sum_probs=181.3
Q ss_pred eeEEEEecCCCcEEEEEeCCceEEEEeC--CCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC----CC
Q 039302 172 VNRIRAMSQNPHICASWADTGHVQVWDF--RSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP----VA 245 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~V~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~----~~ 245 (479)
+..++|+|++ ++|++++.+++|++||+ .+ .+.+.++. +......++|+| ++
T Consensus 181 ~~~v~~spdg-~~l~v~~~d~~V~v~D~~~~t---------------------~~~~~~i~-~g~~p~~va~sp~~~~dg 237 (543)
T 1nir_A 181 VHISRMSASG-RYLLVIGRDARIDMIDLWAKE---------------------PTKVAEIK-IGIEARSVESSKFKGYED 237 (543)
T ss_dssp EEEEEECTTS-CEEEEEETTSEEEEEETTSSS---------------------CEEEEEEE-CCSEEEEEEECCSTTCTT
T ss_pred cceEEECCCC-CEEEEECCCCeEEEEECcCCC---------------------CcEEEEEe-cCCCcceEEeCCCcCCCC
Confidence 8999999999 67777788899999999 44 45566666 445689999999 99
Q ss_pred CCeEEEEe-CCCeEEEEecCCCCccccCCC-C--cc---cCC-CcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 246 PGRLVSGD-CNSCIHLWEPASDATWNVDPN-P--FI---GHA-ASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 246 ~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~-~--~~---~h~-~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
. +|++++ .+++|.+||..+......... . .. -|. ..+..+.++|++..++++...++.|.+||+.+.+...
T Consensus 238 ~-~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~ 316 (543)
T 1nir_A 238 R-YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT 316 (543)
T ss_dssp T-EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE
T ss_pred C-EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce
Confidence 8 888877 489999999877554221110 0 00 122 3789999999988788888899999999998865332
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec----CCCCeEEEEEeCCCCCEEEEEe-C
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----HKHPVTSIEWSPHEGSTLAVSS-A 392 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----h~~~I~~v~~sp~~~~~las~s-~ 392 (479)
.....+...+..+.|+|++..+++++..+++|.+||+.+++ ++..+.. |.+....+ ++|+++.++++++ .
T Consensus 317 ~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~----l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~ 391 (543)
T 1nir_A 317 VTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRR----LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLG 391 (543)
T ss_dssp EEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSS
T ss_pred eEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCe----EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCC
Confidence 22334566788999999994456666678999999999887 7777764 65544444 5787667888876 5
Q ss_pred CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEE--c-----CCCceE
Q 039302 393 DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVST--A-----ADGFNI 464 (479)
Q Consensus 393 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~--~-----~dgi~i 464 (479)
|++|.+||+...... ....+.+....++ ..+..+++||+++.+.+.. + .+.|.|
T Consensus 392 d~~V~v~d~~~~~~~------------------~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v 453 (543)
T 1nir_A 392 DGSISLIGTDPKNHP------------------QYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAV 453 (543)
T ss_dssp SSEEEEEECCTTTCT------------------TTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEE
T ss_pred CceEEEEEeCCCCCc------------------hhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEE
Confidence 899999999874210 0001223332333 3578899999998555544 1 345999
Q ss_pred EeeeccC
Q 039302 465 LMPSNIQ 471 (479)
Q Consensus 465 w~~~~~~ 471 (479)
|++.+..
T Consensus 454 ~d~~~~~ 460 (543)
T 1nir_A 454 FDLKNLD 460 (543)
T ss_dssp EETTCTT
T ss_pred EECCCCC
Confidence 9988764
No 135
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.87 E-value=5.5e-20 Score=189.52 Aligned_cols=258 Identities=14% Similarity=0.099 Sum_probs=186.5
Q ss_pred EecCCcceeEEEEec----CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC---------
Q 039302 165 KVAHQGCVNRIRAMS----QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG--------- 231 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p----~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 231 (479)
.+.+...+..++|+| ++..++++...+++|.|||..+ .+++.++..
T Consensus 217 ~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t---------------------~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 217 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGET---------------------LEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTT---------------------CCEEEEEECCEECSSSCC
T ss_pred EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccc---------------------cccceeecccCcccCccc
Confidence 344566789999999 9955544444689999999876 455555543
Q ss_pred -CC-CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 232 -HK-DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 232 -h~-~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
|. ..+.++.++|++..++++...++.|.+||+.+...... . ...+...+.++.|+|+++.+++++..+++|.+||
T Consensus 276 ~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~--~-~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 276 YHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV--T-SIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp EESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEE--E-EEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred cccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCccee--E-EeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 22 37899999998875778888899999999977543221 1 1234566888999999995555666789999999
Q ss_pred cCCCCceeeEEec----CCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCC---CCceEEEeecCCCCeEEEEEeC
Q 039302 310 TRVGKSALMSFKA----HNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKG---GDSVVAHFEYHKHPVTSIEWSP 381 (479)
Q Consensus 310 ~~~~~~~~~~~~~----h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~---~~~~~~~~~~h~~~I~~v~~sp 381 (479)
+.+++ ++..+.. |......+ ++|+++.+++++. .|++|.|||+.+... ....+.++..|...+..|+++|
T Consensus 353 ~~tg~-l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p 430 (543)
T 1nir_A 353 SKDRR-LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP 430 (543)
T ss_dssp TTTTE-EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT
T ss_pred CCCCe-EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC
Confidence 99985 5555543 55433333 5777547888886 689999999988210 1238999999999999999999
Q ss_pred CCCCEEEEEe-------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe------ecCCCCeeeEEEeC
Q 039302 382 HEGSTLAVSS-------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI------HQGQKDLKELHWHT 448 (479)
Q Consensus 382 ~~~~~las~s-------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~------h~g~~~V~~v~w~p 448 (479)
++ ..|++++ .+++|.|||+.+... ..+.+.+ ..+...+..+.|+|
T Consensus 431 dg-~~l~v~~~~~~~~~~~~~v~v~d~~~~~~---------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~ 488 (543)
T 1nir_A 431 KS-SHLYVDTTFNPDARISQSVAVFDLKNLDA---------------------KYQVLPIAEWADLGEGAKRVVQPEYNK 488 (543)
T ss_dssp TC-CEEEECCTTCSSHHHHTCEEEEETTCTTS---------------------CCEEECHHHHHCCCSSCCEEEEEEECS
T ss_pred CC-CcEEEecCCCCCcccCceEEEEECCCCCC---------------------CeEEeechhhcccCCCCCceEeccCCC
Confidence 65 8888887 277999999998742 1122211 12345799999999
Q ss_pred CCCcEEEEEc----CCC-ceEEeeecc
Q 039302 449 QVPGMIVSTA----ADG-FNILMPSNI 470 (479)
Q Consensus 449 ~~~~ll~s~~----~dg-i~iw~~~~~ 470 (479)
++..+++|.. .++ |.||+..+.
T Consensus 489 ~g~~~~~s~~~~~~~~~~i~v~D~~t~ 515 (543)
T 1nir_A 489 RGDEVWFSVWNGKNDSSALVVVDDKTL 515 (543)
T ss_dssp SSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCEEEEEeecCCCCCCeEEEEECCCc
Confidence 9998887753 345 999988765
No 136
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.86 E-value=2.3e-18 Score=168.16 Aligned_cols=292 Identities=9% Similarity=0.043 Sum_probs=187.5
Q ss_pred CceEEEEEeecCCCCCCceEEEEEeeecCCccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCceeEEEEecCCc
Q 039302 91 PYTAYFVAGSQAEKPSWNSIGVFKVSNISGKRRELVPNKPATGDEDADGESSDSDDDSDDEEEGGSGTPILQLRKVAHQG 170 (479)
Q Consensus 91 ~~~~~~~~gt~~~~~~~n~i~v~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~~~~H~~ 170 (479)
+...++.+||.+.+ ..+.|++|.+.. + .++... .... |..
T Consensus 11 ~~~~~~~vg~y~~~-~~~~i~~~~~d~-------------------------------~------~g~~~~-~~~~-~~~ 50 (361)
T 3scy_A 11 DSELTMLVGTYTSG-NSKGIYTFRFNE-------------------------------E------TGESLP-LSDA-EVA 50 (361)
T ss_dssp GGEEEEEEEECCSS-SCCEEEEEEEET-------------------------------T------TCCEEE-EEEE-ECS
T ss_pred CCceEEEEEeccCC-CCCCEEEEEEeC-------------------------------C------CCCEEE-eecc-cCC
Confidence 34678889999875 567899998831 0 011122 2333 778
Q ss_pred ceeEEEEecCCCcEEEEEeCC----ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 171 CVNRIRAMSQNPHICASWADT----GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+..++|+|++ .+|++++.+ |.|.+|++..... ....+.....+......+++ ++.
T Consensus 51 ~p~~l~~spdg-~~l~~~~~~~~~~~~v~~~~~~~~~g-----------------~~~~~~~~~~~~~~p~~~~~--dg~ 110 (361)
T 3scy_A 51 NPSYLIPSADG-KFVYSVNEFSKDQAAVSAFAFDKEKG-----------------TLHLLNTQKTMGADPCYLTT--NGK 110 (361)
T ss_dssp CCCSEEECTTS-SEEEEEECCSSTTCEEEEEEEETTTT-----------------EEEEEEEEECSSSCEEEEEE--CSS
T ss_pred CCceEEECCCC-CEEEEEEccCCCCCcEEEEEEeCCCC-----------------cEEEeeEeccCCCCcEEEEE--CCC
Confidence 88999999999 455555654 8999999876210 01233344445556777888 565
Q ss_pred CeEEEEe-CCCeEEEEecCCCCccccCCC----------CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 247 GRLVSGD-CNSCIHLWEPASDATWNVDPN----------PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 247 ~~l~sg~-~dg~I~lwd~~~~~~~~~~~~----------~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
+|++++ .++.|.+|++...+....... ....+...+.+++|+|+++.+++++..++.|.+|++.....
T Consensus 111 -~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~ 189 (361)
T 3scy_A 111 -NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN 189 (361)
T ss_dssp -EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred -EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence 566655 688999999975443211000 01122345789999999985556666689999999886532
Q ss_pred ------e------eeEEecCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEee---cCCCCeEEEEE
Q 039302 316 ------A------LMSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFE---YHKHPVTSIEW 379 (479)
Q Consensus 316 ------~------~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~---~h~~~I~~v~~ 379 (479)
. ......+......++|+|++ .+|++++ .++.|.+||+..+.. ..+..+. .+...+..++|
T Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~v~~~~~~~v~v~~~~~g~~--~~~~~~~~~~~~~~~~~~i~~ 266 (361)
T 3scy_A 190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDG-KFAYLINEIGGTVIAFRYADGML--DEIQTVAADTVNAQGSGDIHL 266 (361)
T ss_dssp TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTCEEEEEEEETTEE--EEEEEEESCSSCCCCEEEEEE
T ss_pred cccccceeecccccceecCCCCCCeEEEEcCCC-CEEEEEcCCCCeEEEEEecCCce--EEeEEEecCCCCCCCcccEEE
Confidence 1 11123345668899999999 5555544 789999999985531 1233332 23455789999
Q ss_pred eCCCCCEEEEEeC--CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEE
Q 039302 380 SPHEGSTLAVSSA--DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 380 sp~~~~~las~s~--Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~ 457 (479)
+|++ ++|++++. ++.|.+|++..... ....+........+..++|+|++..++++.
T Consensus 267 spdg-~~l~v~~~~~~~~i~v~~~~~~~g---------------------~~~~~~~~~~g~~~~~~~~spdg~~l~~~~ 324 (361)
T 3scy_A 267 SPDG-KYLYASNRLKADGVAIFKVDETNG---------------------TLTKVGYQLTGIHPRNFIITPNGKYLLVAC 324 (361)
T ss_dssp CTTS-SEEEEEECSSSCEEEEEEECTTTC---------------------CEEEEEEEECSSCCCEEEECTTSCEEEEEE
T ss_pred CCCC-CEEEEECCCCCCEEEEEEEcCCCC---------------------cEEEeeEecCCCCCceEEECCCCCEEEEEE
Confidence 9976 66655554 58999999973310 011222222234688999999998777776
Q ss_pred cCCC-ceEEeee
Q 039302 458 AADG-FNILMPS 468 (479)
Q Consensus 458 ~~dg-i~iw~~~ 468 (479)
..++ +.+|++.
T Consensus 325 ~~~~~v~v~~~d 336 (361)
T 3scy_A 325 RDTNVIQIFERD 336 (361)
T ss_dssp TTTTEEEEEEEC
T ss_pred CCCCCEEEEEEE
Confidence 5655 8897664
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=8.7e-19 Score=169.98 Aligned_cols=234 Identities=10% Similarity=0.031 Sum_probs=172.9
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC---------ceE
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD---------EGY 237 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------~v~ 237 (479)
.+...+..+.|+|++..++++...++.|.+||... .+.+..+..+.. .+.
T Consensus 86 ~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~ 144 (353)
T 3vgz_A 86 HNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT---------------------GEVKGRLVLDDRKRTEEVRPLQPR 144 (353)
T ss_dssp EESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT---------------------CCEEEEEESCCCCCCSSCCCCEEE
T ss_pred ecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC---------------------CeeEEEEecCCCccccccCCCCCc
Confidence 33456889999999977888888889999999986 444455544332 268
Q ss_pred EEEeCCCCCCeEEEEe--CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 238 AIDWNPVAPGRLVSGD--CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
+++|+|++. +|++++ .++.|.+||+.++.... .+..+...+.+++|+|+++ .+++++.++.|.+||+.+++
T Consensus 145 ~~~~s~dg~-~l~~~~~~~~~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~- 217 (353)
T 3vgz_A 145 ELVADDATN-TVYISGIGKESVIWVVDGGNIKLKT----AIQNTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNK- 217 (353)
T ss_dssp EEEEETTTT-EEEEEEESSSCEEEEEETTTTEEEE----EECCCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTE-
T ss_pred eEEECCCCC-EEEEEecCCCceEEEEcCCCCceEE----EecCCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCe-
Confidence 899999997 666665 47899999997754322 2222445578899999998 78888889999999999875
Q ss_pred eeeEEec----CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 316 ALMSFKA----HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 316 ~~~~~~~----h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
....+.. +...+..++|+|++..++++...++.|.+||+.+++ .+..+.... + ..++|+|++..++++..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~----~~~~~~~~~-~-~~~~~s~dg~~l~v~~~ 291 (353)
T 3vgz_A 218 ILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN----ILAKVAAPE-S-LAVLFNPARNEAYVTHR 291 (353)
T ss_dssp EEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC----EEEEEECSS-C-CCEEEETTTTEEEEEET
T ss_pred EEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc----EEEEEEcCC-C-ceEEECCCCCEEEEEEC
Confidence 4444432 456788999999995555666666999999998877 666666533 2 57999997744566666
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~ 459 (479)
.++.|.+||+.... ++........+..++|+|++..++++...
T Consensus 292 ~~~~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 292 QAGKVSVIDAKSYK-------------------------VVKTFDTPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TTTEEEEEETTTTE-------------------------EEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred CCCeEEEEECCCCe-------------------------EEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence 79999999998763 22222223468999999999877777765
No 138
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.85 E-value=9.9e-21 Score=189.86 Aligned_cols=206 Identities=17% Similarity=0.209 Sum_probs=150.6
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc-----------cccCCCCcccCCCcEEEEEECCCCCcEEE----E
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT-----------WNVDPNPFIGHAASVEDLQWSPTESDVFA----S 298 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~-----------~~~~~~~~~~h~~~V~~l~~sp~~~~~l~----s 298 (479)
..+..|++++.+. +|++++.++ |++|+...... ..........+...|++++|+|++. +|+ +
T Consensus 37 ~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~lav~~~s 113 (434)
T 2oit_A 37 ERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-TLSACMMS 113 (434)
T ss_dssp SCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-EEEEEEEE
T ss_pred CCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-EEEEEEec
Confidence 3578899999886 999999887 88887532100 0000011123567899999999998 777 7
Q ss_pred EeCCCcEEEEEcCCC-----C--ce---eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee
Q 039302 299 CSVDGNIAIWDTRVG-----K--SA---LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368 (479)
Q Consensus 299 ~s~dg~I~iwD~~~~-----~--~~---~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~ 368 (479)
|+.|++|+|||+++. + .+ +..+.+|...|++++|+|+.+.+|++|+.||+|++||+++.. .+....
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~----~~~~~~ 189 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV----KVCATL 189 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE----EEEEEE
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc----ceeecc
Confidence 888999999998754 1 11 334467899999999999855899999999999999999875 566677
Q ss_pred cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec----CC-CCeee
Q 039302 369 YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ----GQ-KDLKE 443 (479)
Q Consensus 369 ~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~----g~-~~V~~ 443 (479)
+|...|++++|+|+ +.+|++|+.||.|++||++.... ..+..|. .+ ..|.+
T Consensus 190 ~~~~~v~~v~wspd-g~~lasgs~dg~v~iwd~~~~~~-----------------------~~~~~~~~~~~~~~~~v~~ 245 (434)
T 2oit_A 190 PSTVAVTSVCWSPK-GKQLAVGKQNGTVVQYLPTLQEK-----------------------KVIPCPPFYESDHPVRVLD 245 (434)
T ss_dssp CGGGCEEEEEECTT-SSCEEEEETTSCEEEECTTCCEE-----------------------EEECCCTTCCTTSCEEEEE
T ss_pred CCCCceeEEEEcCC-CCEEEEEcCCCcEEEEccCCccc-----------------------ccccCCcccCCCCceeEEE
Confidence 78999999999996 59999999999999999982210 1111111 11 26999
Q ss_pred EEEeCCCCcEEEEEcCCC-------ceEEeeecc
Q 039302 444 LHWHTQVPGMIVSTAADG-------FNILMPSNI 470 (479)
Q Consensus 444 v~w~p~~~~ll~s~~~dg-------i~iw~~~~~ 470 (479)
++|+++...+++.+..+| +.+|.+.+.
T Consensus 246 v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 246 VLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp EEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred EEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 999998765555454442 567776654
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=1e-18 Score=169.47 Aligned_cols=246 Identities=11% Similarity=0.052 Sum_probs=176.5
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeC------CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWAD------TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
......+..++++|++..++++... ++.|.+||... .+.+..+.. ...+.++
T Consensus 37 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~---------------------~~~~~~~~~-~~~~~~~ 94 (353)
T 3vgz_A 37 KAVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT---------------------LEVTQAIHN-DLKPFGA 94 (353)
T ss_dssp EEEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT---------------------CCEEEEEEE-SSCCCSE
T ss_pred hhhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC---------------------CeEEEEEec-CCCcceE
Confidence 3445678899999999666655433 67899999987 445555543 3357789
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCC---------CcEEEEEECCCCCcEEEEE-eCCCcEEEEE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHA---------ASVEDLQWSPTESDVFASC-SVDGNIAIWD 309 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~---------~~V~~l~~sp~~~~~l~s~-s~dg~I~iwD 309 (479)
+|+|++...++++..++.|.+||+.++..... +..+. ..+.+++|+|+++.+++++ +.++.|.+||
T Consensus 95 ~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d 170 (353)
T 3vgz_A 95 TINNTTQTLWFGNTVNSAVTAIDAKTGEVKGR----LVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD 170 (353)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTTCCEEEE----EESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred EECCCCCEEEEEecCCCEEEEEeCCCCeeEEE----EecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence 99999973445556679999999987654221 11111 1378999999998444444 3588999999
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec----CCCCeEEEEEeCCCCC
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----HKHPVTSIEWSPHEGS 385 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----h~~~I~~v~~sp~~~~ 385 (479)
+.+.+ .+..+..+...+..++|+|++ .+|++++.++.|.+||+.+.+ .+..+.. +...+.+++|+|++..
T Consensus 171 ~~~~~-~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~dg~~ 244 (353)
T 3vgz_A 171 GGNIK-LKTAIQNTGKMSTGLALDSEG-KRLYTTNADGELITIDTADNK----ILSRKKLLDDGKEHFFINISLDTARQR 244 (353)
T ss_dssp TTTTE-EEEEECCCCTTCCCCEEETTT-TEEEEECTTSEEEEEETTTTE----EEEEEECCCSSSCCCEEEEEEETTTTE
T ss_pred CCCCc-eEEEecCCCCccceEEECCCC-CEEEEEcCCCeEEEEECCCCe----EEEEEEcCCCCCCcccceEEECCCCCE
Confidence 99875 555555466668899999999 778888889999999999877 5666554 5567889999997744
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceE
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNI 464 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~i 464 (479)
++++...++.|.+||+.... ++...... ....++|+|++..++++...++ |.+
T Consensus 245 l~~~~~~~~~v~~~d~~~~~-------------------------~~~~~~~~-~~~~~~~s~dg~~l~v~~~~~~~v~~ 298 (353)
T 3vgz_A 245 AFITDSKAAEVLVVDTRNGN-------------------------ILAKVAAP-ESLAVLFNPARNEAYVTHRQAGKVSV 298 (353)
T ss_dssp EEEEESSSSEEEEEETTTCC-------------------------EEEEEECS-SCCCEEEETTTTEEEEEETTTTEEEE
T ss_pred EEEEeCCCCEEEEEECCCCc-------------------------EEEEEEcC-CCceEEECCCCCEEEEEECCCCeEEE
Confidence 55555556999999997763 11111111 2367999999987888876666 999
Q ss_pred Eeeec
Q 039302 465 LMPSN 469 (479)
Q Consensus 465 w~~~~ 469 (479)
|++.+
T Consensus 299 ~d~~~ 303 (353)
T 3vgz_A 299 IDAKS 303 (353)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 98754
No 140
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=2e-19 Score=192.69 Aligned_cols=240 Identities=10% Similarity=0.076 Sum_probs=170.5
Q ss_pred CcceeEEEEecCCCcEEEEEeC-Cc-----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC---------
Q 039302 169 QGCVNRIRAMSQNPHICASWAD-TG-----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK--------- 233 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~-dg-----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--------- 233 (479)
...|+.++|+|+| ..|++++. +| .|++||+... +....+..+.
T Consensus 36 ~~~~~~~~~SpdG-~~la~~~~~d~~~~~~~i~~~d~~~g---------------------~~~~~~~~~~~~~~~~~~~ 93 (741)
T 2ecf_A 36 GPTLMKPKVAPDG-SRVTFLRGKDSDRNQLDLWSYDIGSG---------------------QTRLLVDSKVVLPGTETLS 93 (741)
T ss_dssp CCCCEEEEECTTS-SEEEEEECCSSCTTEEEEEEEETTTC---------------------CEEEEECGGGTC-------
T ss_pred CCCCCCceEecCC-CEEEEEeccCCCCcccEEEEEECCCC---------------------ceeEccchhhccccccccc
Confidence 4568999999999 56677776 88 8999999763 2222221111
Q ss_pred ---------------CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEE
Q 039302 234 ---------------DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFAS 298 (479)
Q Consensus 234 ---------------~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 298 (479)
..+.+++|+|++. +|++++. +.|++||+.++.... ...+..|...+.+++|+|+|+ .|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~--~~~l~~~~~~~~~~~~SPDG~-~la~ 168 (741)
T 2ecf_A 94 DEEKARRERQRIAAMTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKAA--VRQLTHGEGFATDAKLSPKGG-FVSF 168 (741)
T ss_dssp -------------CCEESCCCEECTTSS-EEEEEET-TEEEEEESSSCSTTS--CCBCCCSSSCEEEEEECTTSS-EEEE
T ss_pred chhhhhhhhhhhccccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCcce--EEEcccCCcccccccCCCCCC-EEEE
Confidence 2478999999998 8888886 999999998752000 244667788899999999999 7888
Q ss_pred EeCCCcEEEEEcCCCCceeeEEecCCCC----------------EEEEEEcCCCCcEEEEEeCCC---------------
Q 039302 299 CSVDGNIAIWDTRVGKSALMSFKAHNAD----------------VNVISWNRLASCLLASGSDDG--------------- 347 (479)
Q Consensus 299 ~s~dg~I~iwD~~~~~~~~~~~~~h~~~----------------v~~l~~~p~~~~~l~sgs~dg--------------- 347 (479)
++ ++.|++||+.++. .......+... +..++|+|++ ..|++++.|+
T Consensus 169 ~~-~~~i~~~d~~~g~-~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p~~ 245 (741)
T 2ecf_A 169 IR-GRNLWVIDLASGR-QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYADR 245 (741)
T ss_dssp EE-TTEEEEEETTTTE-EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECSSC
T ss_pred Ee-CCcEEEEecCCCC-EEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCCCc
Confidence 77 5699999998864 22222222222 4779999999 7777776655
Q ss_pred ------------------eEEEEeCCC-CCCCCceEEEee--cCCCCeEEEEEeCCCCCEEEEEeC-----CCcEEEEEC
Q 039302 348 ------------------TFSIHDLRL-LKGGDSVVAHFE--YHKHPVTSIEWSPHEGSTLAVSSA-----DNQLTIWDL 401 (479)
Q Consensus 348 ------------------~i~iwDlr~-~~~~~~~~~~~~--~h~~~I~~v~~sp~~~~~las~s~-----Dg~I~iwdl 401 (479)
.|++||+.+ .. ...... .|...+.+++| |++ ..|++++. +..|++||+
T Consensus 246 ~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~~~d~ 319 (741)
T 2ecf_A 246 TDVIEQRYPAAGDANVQVKLGVISPAEQAQ----TQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLVEVTL 319 (741)
T ss_dssp EEEEEEECCBTTSCCCEEEEEEECSSTTCC----CEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEEEEET
T ss_pred ccceEeecCCCCCCCCeeEEEEEECCCCCc----eEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEEEEEC
Confidence 889999987 65 333332 47788999999 966 76766553 568999999
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCC---CeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQK---DLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~---~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
..... ..++..+. .. .+..++|+|++. ++++++.++ ++||.+.
T Consensus 320 ~~g~~----------------------~~~~~~~~-~~~~~~~~~~~~spdg~-~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 320 ASNQQ----------------------RVLAHETS-PTWVPLHNSLRFLDDGS-ILWSSERTGFQHLYRID 366 (741)
T ss_dssp TTCCE----------------------EEEEEEEC-SSCCCCCSCCEECTTSC-EEEEECTTSSCEEEEEC
T ss_pred CCCce----------------------EEEEEcCC-CCcCCcCCceEECCCCe-EEEEecCCCccEEEEEc
Confidence 87642 12222232 12 357899999997 778877777 7888664
No 141
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.84 E-value=1.1e-18 Score=168.02 Aligned_cols=243 Identities=9% Similarity=-0.039 Sum_probs=168.6
Q ss_pred EEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeC-
Q 039302 176 RAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDC- 254 (479)
Q Consensus 176 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~- 254 (479)
.|.+.+..++++++.++.|++||+.. .+.+..+..+.... +++|+|++. +|++++.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~-~~~~s~dg~-~l~~~~~~ 60 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT---------------------LEILNQITLGYDFV-DTAITSDCS-NVVVTSDF 60 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT---------------------CCEEEEEECCCCEE-EEEECSSSC-EEEEEEST
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc---------------------cceeeeEEccCCcc-eEEEcCCCC-EEEEEeCC
Confidence 45566668899999999999999987 45556666666666 999999997 6665554
Q ss_pred CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC---cEEEEEcCCCCceeeEEecCCCCEEEEE
Q 039302 255 NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG---NIAIWDTRVGKSALMSFKAHNADVNVIS 331 (479)
Q Consensus 255 dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg---~I~iwD~~~~~~~~~~~~~h~~~v~~l~ 331 (479)
++.|.+||+.++.... ..+..+..+..+++|+|+++ +++++..++ .|.+||+.+++ .+..+. .......++
T Consensus 61 ~~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~-~~~~~~-~~~~~~~~~ 134 (331)
T 3u4y_A 61 CQTLVQIETQLEPPKV---VAIQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNK-FISTIP-IPYDAVGIA 134 (331)
T ss_dssp TCEEEEEECSSSSCEE---EEEEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTE-EEEEEE-CCTTEEEEE
T ss_pred CCeEEEEECCCCceeE---EecccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCC-eEEEEE-CCCCccceE
Confidence 8899999998754311 23444555555599999999 666555443 89999999875 444444 345579999
Q ss_pred EcCCCCcEEEEEeCCCe-EEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 332 WNRLASCLLASGSDDGT-FSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 332 ~~p~~~~~l~sgs~dg~-i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
|+|++..+++++..++. |.+|++...................+..++|+|++..+++++..++.|.+||+.....
T Consensus 135 ~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~---- 210 (331)
T 3u4y_A 135 ISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN---- 210 (331)
T ss_dssp ECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS----
T ss_pred ECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc----
Confidence 99999667777777788 9999998644200000122234556899999997634556666799999999986631
Q ss_pred HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeec
Q 039302 411 AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSN 469 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~ 469 (479)
.+.+........+..++|+|++..++++...++ |.+|++.+
T Consensus 211 ------------------~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~ 252 (331)
T 3u4y_A 211 ------------------ITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLS 252 (331)
T ss_dssp ------------------CEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEEEEETTT
T ss_pred ------------------cceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEEEEECCC
Confidence 011222223357899999999986777665554 88888654
No 142
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.84 E-value=5.8e-19 Score=189.19 Aligned_cols=237 Identities=9% Similarity=0.061 Sum_probs=170.3
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCC--CcEEecCCCCceEEEEeCCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQS--PLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
..|..++|+|++ ..|++++. +.|++||+.. .. ....+..|...+.+++|+|++.
T Consensus 109 ~~v~~~~~SpDg-~~l~~~~~-~~i~~~d~~~---------------------~~~~~~~~l~~~~~~~~~~~~SPDG~- 164 (741)
T 2ecf_A 109 TGIVDYQWSPDA-QRLLFPLG-GELYLYDLKQ---------------------EGKAAVRQLTHGEGFATDAKLSPKGG- 164 (741)
T ss_dssp EESCCCEECTTS-SEEEEEET-TEEEEEESSS---------------------CSTTSCCBCCCSSSCEEEEEECTTSS-
T ss_pred cCcceeEECCCC-CEEEEEeC-CcEEEEECCC---------------------CCcceEEEcccCCcccccccCCCCCC-
Confidence 458999999999 55666565 9999999986 21 2334566778899999999998
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCC----------------cEEEEEECCCCCcEEEEEeCCC--------
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA----------------SVEDLQWSPTESDVFASCSVDG-------- 303 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~----------------~V~~l~~sp~~~~~l~s~s~dg-------- 303 (479)
+|++++ ++.|++||+.++....+ ...+.. .+.+++|+|+++ .|++++.|+
T Consensus 165 ~la~~~-~~~i~~~d~~~g~~~~~----~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~~d~~~~~~~~~ 238 (741)
T 2ecf_A 165 FVSFIR-GRNLWVIDLASGRQMQL----TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYARIDESPVPVQKR 238 (741)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEC----CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEEEECTTSCEEEE
T ss_pred EEEEEe-CCcEEEEecCCCCEEEe----ccCCccceeccccceeeeeccccccceEECCCCC-EEEEEEEcCCCCceEec
Confidence 888887 56999999977543221 111222 247899999999 777776665
Q ss_pred -------------------------cEEEEEcCC-CCceeeEEe--cCCCCEEEEEEcCCCCcEEEEEeC-----CCeEE
Q 039302 304 -------------------------NIAIWDTRV-GKSALMSFK--AHNADVNVISWNRLASCLLASGSD-----DGTFS 350 (479)
Q Consensus 304 -------------------------~I~iwD~~~-~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~sgs~-----dg~i~ 350 (479)
.|.+||+.+ ++ ...... .|...+..++| |++ ..|++++. +..|+
T Consensus 239 ~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~-pDg-~~l~~~~~~~~~~~~~i~ 315 (741)
T 2ecf_A 239 YEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQ-TQWIDLGKEQDIYLARVNW-RDP-QHLSFQRQSRDQKKLDLV 315 (741)
T ss_dssp EEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCC-CEEECCCSCSSEEEEEEEE-EET-TEEEEEEEETTSSEEEEE
T ss_pred CCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCc-eEEecCCCCcceEEEEEEe-CCC-CEEEEEEecccCCeEEEE
Confidence 789999988 65 222221 47778999999 999 66665543 56899
Q ss_pred EEeCCCCCCCCceEEEeecCCC----CeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 351 IHDLRLLKGGDSVVAHFEYHKH----PVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~~h~~----~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
+||+.++. ....+..|.. .+.+++|+|++ .++++++.|+.+.||.+....
T Consensus 316 ~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~~~~~~--------------------- 369 (741)
T 2ecf_A 316 EVTLASNQ----QRVLAHETSPTWVPLHNSLRFLDDG-SILWSSERTGFQHLYRIDSKG--------------------- 369 (741)
T ss_dssp EEETTTCC----EEEEEEEECSSCCCCCSCCEECTTS-CEEEEECTTSSCEEEEECSSS---------------------
T ss_pred EEECCCCc----eEEEEEcCCCCcCCcCCceEECCCC-eEEEEecCCCccEEEEEcCCC---------------------
Confidence 99999877 5555555443 45689999976 699999999999999876432
Q ss_pred CCCceEEeecCCCCeeeE-EEeCCCCcEEEEEcCCC---ceEEeee
Q 039302 427 LPPQLLFIHQGQKDLKEL-HWHTQVPGMIVSTAADG---FNILMPS 468 (479)
Q Consensus 427 ~p~~l~~~h~g~~~V~~v-~w~p~~~~ll~s~~~dg---i~iw~~~ 468 (479)
.+.....+...|..+ .|+|++..++++++.++ ++||++.
T Consensus 370 ---~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 370 ---KAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp ---CEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred ---CeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence 111112223467777 59999987777777764 7899875
No 143
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=3.4e-19 Score=167.59 Aligned_cols=226 Identities=13% Similarity=0.121 Sum_probs=157.7
Q ss_pred EEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCC-
Q 039302 187 SWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPAS- 265 (479)
Q Consensus 187 t~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~- 265 (479)
+++.++.|++||+.. .+. ..+..|...+.+++|+|++. +|++++ ++.|++||+.+
T Consensus 17 ~~~~~~~i~~~d~~~---------------------~~~-~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~ 72 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT---------------------RKM-RVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGD 72 (297)
T ss_dssp -CCCCEEEEEEETTT---------------------TEE-EEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSC
T ss_pred CCCcceeEEEEeCCC---------------------Cce-eeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCC
Confidence 456789999999976 232 34556788999999999998 888887 88999999987
Q ss_pred CCccccCCCCcccC-CCcEEEEEECCCCCcEEEEEe--CCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEE
Q 039302 266 DATWNVDPNPFIGH-AASVEDLQWSPTESDVFASCS--VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLAS 342 (479)
Q Consensus 266 ~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s--~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~s 342 (479)
+.... ....+ ...+.+++|+|+++ .|++++ .++.+.||.+.........+..+ ..+..++|+|++..++++
T Consensus 73 ~~~~~----~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~ 146 (297)
T 2ojh_A 73 PSPEK----VDTGFATICNNDHGISPDGA-LYAISDKVEFGKSAIYLLPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYC 146 (297)
T ss_dssp CSCEE----CCCTTCCCBCSCCEECTTSS-EEEEEECTTTSSCEEEEEETTCCCCEECCSS-SSEEEEEECTTSSEEEEE
T ss_pred CCceE----eccccccccccceEECCCCC-EEEEEEeCCCCcceEEEEECCCCceEEeecC-CCccceEECCCCCEEEEE
Confidence 54422 22333 46788999999998 788887 34556666554322223344433 348999999999445558
Q ss_pred EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCcEEEEECCCCCChHHHHHHhhhccccc
Q 039302 343 GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS-ADNQLTIWDLSLEKDEEEEAEFKAKTREQV 421 (479)
Q Consensus 343 gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s-~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 421 (479)
++.++.++||+++.... ....+..|...+.+++|+|++ ..|+.++ .++.+.||++.....
T Consensus 147 ~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~~~~~~~~--------------- 207 (297)
T 2ojh_A 147 GIRDQVFDIYSMDIDSG---VETRLTHGEGRNDGPDYSPDG-RWIYFNSSRTGQMQIWRVRVDGS--------------- 207 (297)
T ss_dssp EEETTEEEEEEEETTTC---CEEECCCSSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTSS---------------
T ss_pred ECCCCceEEEEEECCCC---cceEcccCCCccccceECCCC-CEEEEEecCCCCccEEEECCCCC---------------
Confidence 88999999999754332 456677788899999999976 6555554 699999999874321
Q ss_pred CCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC----------C-ceEEeeec
Q 039302 422 NAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD----------G-FNILMPSN 469 (479)
Q Consensus 422 ~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d----------g-i~iw~~~~ 469 (479)
.+.....+...+..++|+|++..+++++..+ + |.+|++.+
T Consensus 208 --------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~ 258 (297)
T 2ojh_A 208 --------SVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDG 258 (297)
T ss_dssp --------CEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTS
T ss_pred --------CcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCC
Confidence 1111222224688999999997665555542 2 77777643
No 144
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=6.5e-19 Score=169.47 Aligned_cols=236 Identities=10% Similarity=0.036 Sum_probs=165.5
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-C----CCceEEEEeCCCC
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-H----KDEGYAIDWNPVA 245 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h----~~~v~~l~~s~~~ 245 (479)
.+..++|+|++..++++++.++.|.+||+.. .+.+..+.. + ...+.+++|+|++
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~s~dg 93 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVT---------------------GETLGRIDLSTPEERVKSLFGAALSPDG 93 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTT---------------------CCEEEEEECCBTTEEEECTTCEEECTTS
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCC---------------------CCeEeeEEcCCcccccccccceEECCCC
Confidence 5889999999977888888899999999976 344444432 1 1256789999999
Q ss_pred CCeEEEEe------------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 246 PGRLVSGD------------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 246 ~~~l~sg~------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
. +|++++ .++.|.+||+.++.... .+. ....+.+++|+|+++ .++++ ++.|.+||+.++
T Consensus 94 ~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~----~~~-~~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~ 164 (337)
T 1pby_B 94 K-TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK----AFE-APRQITMLAWARDGS-KLYGL--GRDLHVMDPEAG 164 (337)
T ss_dssp S-EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE----EEE-CCSSCCCEEECTTSS-CEEEE--SSSEEEEETTTT
T ss_pred C-EEEEEecccccccccccccCceEEEEECCCCcEEE----EEe-CCCCcceeEECCCCC-EEEEe--CCeEEEEECCCC
Confidence 7 788875 57999999997643321 122 234577899999998 55555 689999999987
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC-----------------------eEEEEeCCCCCCCCceEEEeecC
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDG-----------------------TFSIHDLRLLKGGDSVVAHFEYH 370 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg-----------------------~i~iwDlr~~~~~~~~~~~~~~h 370 (479)
+ ....+..+.. ...+.|+|++..+++++..++ .|.+||+.+.+. ....+..+
T Consensus 165 ~-~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~~~~~~ 239 (337)
T 1pby_B 165 T-LVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM---AMREVRIM 239 (337)
T ss_dssp E-EEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE---EEEEEEEC
T ss_pred c-Eeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCc---eEeecCCC
Confidence 5 4444443331 112378998854444443443 468999998773 23445667
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 371 KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 371 ~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
...+.+++|+|++ .+|+++ ++.|.+||+...+ .+........+.+++|+|++
T Consensus 240 ~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~s~dg 291 (337)
T 1pby_B 240 DVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA-------------------------SIKRVPLPHSYYSVNVSTDG 291 (337)
T ss_dssp SSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE-------------------------EEEEEECSSCCCEEEECTTS
T ss_pred CCceeeEEECCCC-CEEEEe--CCeEEEEECCCCc-------------------------CcceecCCCceeeEEECCCC
Confidence 7788999999965 777777 7999999997753 22222223468899999999
Q ss_pred CcEEEEEcCCC-ceEEeeecc
Q 039302 451 PGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 451 ~~ll~s~~~dg-i~iw~~~~~ 470 (479)
..++++ +.++ |.+|++.+.
T Consensus 292 ~~l~~~-~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 292 STVWLG-GALGDLAAYDAETL 311 (337)
T ss_dssp CEEEEE-SBSSEEEEEETTTC
T ss_pred CEEEEE-cCCCcEEEEECcCC
Confidence 756655 5555 999987543
No 145
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.83 E-value=5.5e-19 Score=188.77 Aligned_cols=247 Identities=9% Similarity=0.066 Sum_probs=163.6
Q ss_pred EecCCc---ceeEEEEecCCCcEEEEEeCC---------ceEEEEeCCCCcccccccccccCCCCCccccCCC--cEEec
Q 039302 165 KVAHQG---CVNRIRAMSQNPHICASWADT---------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSP--LVKFG 230 (479)
Q Consensus 165 ~~~H~~---~V~~v~~~p~~~~~lat~s~d---------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 230 (479)
+..|.. .|..++|+|++ ..||+++.+ +.|++||+.. .+. +....
T Consensus 53 ~~~~~~~~~~v~~~~~SpDg-~~l~~~~~~~~~~~~~~~~~i~~~d~~~---------------------~~~~~l~~~~ 110 (723)
T 1xfd_A 53 IEGKKIESLRAIRYEISPDR-EYALFSYNVEPIYQHSYTGYYVLSKIPH---------------------GDPQSLDPPE 110 (723)
T ss_dssp ECTTTTTTTTCSEEEECTTS-SEEEEEESCCCCSSSCCCSEEEEEESSS---------------------CCCEECCCTT
T ss_pred eccccccccccceEEECCCC-CEEEEEecCccceeecceeeEEEEECCC---------------------CceEeccCCc
Confidence 344544 49999999999 566666653 7899999987 222 12223
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCC------------------cEEEEEECCCC
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAA------------------SVEDLQWSPTE 292 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~------------------~V~~l~~sp~~ 292 (479)
+|...+..++|||++. +|+.++. +.|++|++.++....+ ...+.. .+.+++|+|++
T Consensus 111 ~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~~~~~----~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg 184 (723)
T 1xfd_A 111 VSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQAIRV----VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG 184 (723)
T ss_dssp CCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSCCEEE----ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred cccccccccEECCCCC-EEEEEEC-CeEEEEECCCCceEEE----ecCCCCCceECcccceeEEEEeccCcceEEECCCC
Confidence 4555688999999998 8998885 8999999987544221 111122 33789999999
Q ss_pred CcEEEEEeCCC----------------------------------cEEEEEcCCCCceeeEEecC------CCCEEEEEE
Q 039302 293 SDVFASCSVDG----------------------------------NIAIWDTRVGKSALMSFKAH------NADVNVISW 332 (479)
Q Consensus 293 ~~~l~s~s~dg----------------------------------~I~iwD~~~~~~~~~~~~~h------~~~v~~l~~ 332 (479)
+ .|++++.++ .|++||+.+++ ....+..+ ...+..++|
T Consensus 185 ~-~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ 262 (723)
T 1xfd_A 185 T-RLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPT-HDLEMMPPDDPRMREYYITMVKW 262 (723)
T ss_dssp S-EEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSC-CCEECCCCCCGGGSSEEEEEEEE
T ss_pred C-EEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCc-eeEEeeCCccCCCccceeEEEEE
Confidence 9 777776543 79999998875 33444433 567899999
Q ss_pred cCCCCcEEEEEeC----CCeEEEEeCCCCCCCCceEEEeec-CCCCeE----EEEEeCCCCCEEEE-EeCCC------cE
Q 039302 333 NRLASCLLASGSD----DGTFSIHDLRLLKGGDSVVAHFEY-HKHPVT----SIEWSPHEGSTLAV-SSADN------QL 396 (479)
Q Consensus 333 ~p~~~~~l~sgs~----dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~----~v~~sp~~~~~las-~s~Dg------~I 396 (479)
+|++ .+|++.+. +..|++||+.+++ ....+.. |...+. .++|+|++..++++ +..++ .|
T Consensus 263 SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l 337 (723)
T 1xfd_A 263 ATST-KVAVTWLNRAQNVSILTLCDATTGV----CTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI 337 (723)
T ss_dssp SSSS-EEEEEEEETTSCEEEEEEEETTTCC----EEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred eCCC-eEEEEEEcCCCCeEEEEEEeCCCCc----ceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEE
Confidence 9999 67766643 3579999998876 4444433 444443 88999977444444 55677 46
Q ss_pred EEEEC-CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeee-EEEeCCCCcEEEEEcCC--C-ceEEeee
Q 039302 397 TIWDL-SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKE-LHWHTQVPGMIVSTAAD--G-FNILMPS 468 (479)
Q Consensus 397 ~iwdl-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~-v~w~p~~~~ll~s~~~d--g-i~iw~~~ 468 (479)
.+||+ ..... .....+ ..++..+.. ++|+|++..+++++..+ + +++|++.
T Consensus 338 ~~~d~~~~~~~-------------------~~~~~l---~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 338 TVSSSQPNSSN-------------------DNIQSI---TSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp EEECSSCCSSS-------------------CCCCBS---CCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEEC
T ss_pred EEEeccCCCCc-------------------cceeEe---ecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEe
Confidence 66663 32210 000111 122344554 69999998776666664 4 8899875
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.82 E-value=2.3e-18 Score=183.57 Aligned_cols=261 Identities=10% Similarity=0.085 Sum_probs=171.7
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCC-----CcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRS-----HLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
.+..|.+.+..++|+|++ ..||+ +.++.|++|++.. ........ ........+.+ ....+...+.+
T Consensus 115 ~l~~~~~~~~~~~~SpdG-~~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~-----~~~~~~~~g~~--~~~ee~~~~~~ 185 (706)
T 2z3z_A 115 YLFDTNEETASLDFSPVG-DRVAY-VRNHNLYIARGGKLGEGMSRAIAVTI-----DGTETLVYGQA--VHQREFGIEKG 185 (706)
T ss_dssp EEECCTTCCTTCEECTTS-SEEEE-EETTEEEEEECBCTTSCCCCCEESCS-----CCBTTEEESSC--CGGGCTTCCCS
T ss_pred EccCCcccccCCcCCCCC-CEEEE-EECCeEEEEecCcccccCCCcEEecc-----CCCCCeEcccc--hhhhhcCCCce
Confidence 456678889999999999 55666 4679999999975 21000000 00000000000 01111223589
Q ss_pred EEeCCCCCCeEEEEe---------------------------------CCCeEEEEecCCCCccccCCCCcccCCCcEEE
Q 039302 239 IDWNPVAPGRLVSGD---------------------------------CNSCIHLWEPASDATWNVDPNPFIGHAASVED 285 (479)
Q Consensus 239 l~~s~~~~~~l~sg~---------------------------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~ 285 (479)
++|+|++. +|++++ .+..|++||+.++..... .....|...+.+
T Consensus 186 ~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~--~~~~~~~~~~~~ 262 (706)
T 2z3z_A 186 TFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYL--QTGEPKEKFLTN 262 (706)
T ss_dssp EEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEEC--CCCSCTTCEEEE
T ss_pred EEECCCCC-EEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEee--ccCCCCceeEee
Confidence 99999998 888887 446899999977543221 222356778999
Q ss_pred EEECCCCCcEEEEEeCCC-----cEEEEEcCCCCceeeEE-ecCCC---CEEEEEEcC--CCCcEEEEEeCCCeEEEEeC
Q 039302 286 LQWSPTESDVFASCSVDG-----NIAIWDTRVGKSALMSF-KAHNA---DVNVISWNR--LASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 286 l~~sp~~~~~l~s~s~dg-----~I~iwD~~~~~~~~~~~-~~h~~---~v~~l~~~p--~~~~~l~sgs~dg~i~iwDl 354 (479)
++|+|+++ .|++++.++ .|.+||+.+++...... ..+.. .+..++|+| ++ .+|++++.+|.++||++
T Consensus 263 ~~~spdg~-~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~ 340 (706)
T 2z3z_A 263 LSWSPDEN-ILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLY 340 (706)
T ss_dssp EEECTTSS-EEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEE
T ss_pred EEEECCCC-EEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEE
Confidence 99999999 777777665 89999999873222222 22222 246789999 88 79999999999999988
Q ss_pred C-CCCCCCceEEEeecCCCCeEE-EEEeCCCCCEEEEEeCCC----cEEEEECCCCCChHHHHHHhhhcccccCCCCCCC
Q 039302 355 R-LLKGGDSVVAHFEYHKHPVTS-IEWSPHEGSTLAVSSADN----QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLP 428 (479)
Q Consensus 355 r-~~~~~~~~~~~~~~h~~~I~~-v~~sp~~~~~las~s~Dg----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p 428 (479)
. ... .+..+..|...+.+ ++|+|++..++++++.++ .|..||+.....
T Consensus 341 ~~~~~----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~---------------------- 394 (706)
T 2z3z_A 341 DTTGR----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT---------------------- 394 (706)
T ss_dssp ETTSC----EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC----------------------
T ss_pred ECCCC----EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc----------------------
Confidence 6 333 67778888888887 799997644555555555 566666654421
Q ss_pred CceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC----ceEEeee
Q 039302 429 PQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG----FNILMPS 468 (479)
Q Consensus 429 ~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg----i~iw~~~ 468 (479)
.. ..| ...+.+++|+|++..++++++... +.+|++.
T Consensus 395 -~~-l~~--~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 395 -KD-LTP--ESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp -EE-SCC--SSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESS
T ss_pred -ee-ccC--CCceEEEEECCCCCEEEEEecCCCCCcEEEEEECC
Confidence 11 112 246889999999987777666543 7788754
No 147
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.82 E-value=1.3e-18 Score=167.80 Aligned_cols=241 Identities=9% Similarity=0.052 Sum_probs=159.5
Q ss_pred CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCC-CeEE
Q 039302 181 NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN-SCIH 259 (479)
Q Consensus 181 ~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~d-g~I~ 259 (479)
+..++++++.++.|++|++.... ....+..+ .|...+.+++|+|++. +|++++.+ +.|.
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~------------------~~~~~~~~-~~~~~~~~~~~spdg~-~l~~~~~~~~~v~ 63 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEG------------------ALTLTQVV-DVPGQVQPMVVSPDKR-YLYVGVRPEFRVL 63 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTS------------------CEEEEEEE-ECSSCCCCEEECTTSS-EEEEEETTTTEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCC------------------cEEEeeeE-ecCCCCceEEECCCCC-EEEEeecCCCeEE
Confidence 33567777889999999996410 01222333 4667889999999998 88888876 9999
Q ss_pred EEecC--CCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC--ceeeEEecCCCCEEEEEEcCC
Q 039302 260 LWEPA--SDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK--SALMSFKAHNADVNVISWNRL 335 (479)
Q Consensus 260 lwd~~--~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~--~~~~~~~~h~~~v~~l~~~p~ 335 (479)
+|++. ++.... ...+..+ ..+.+++|+|+++.+++++..++.|.+||+..+. .....+. ....+.+++|+|+
T Consensus 64 ~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~d 139 (343)
T 1ri6_A 64 AYRIAPDDGALTF--AAESALP-GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPD 139 (343)
T ss_dssp EEEECTTTCCEEE--EEEEECS-SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTT
T ss_pred EEEecCCCCceee--ccccccC-CCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCC
Confidence 99997 332211 1122223 3788999999999444555568999999995321 1233333 3446899999999
Q ss_pred CCcEEEEEe-CCCeEEEEeCCCCCCCCceEE--Eeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHH
Q 039302 336 ASCLLASGS-DDGTFSIHDLRLLKGGDSVVA--HFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEA 411 (479)
Q Consensus 336 ~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~--~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~ 411 (479)
+ .+|++++ .++.|++||+..... ...+. .+.. ....+..++|+|++..+++++..++.|.+|++.....
T Consensus 140 g-~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g----- 212 (343)
T 1ri6_A 140 N-RTLWVPALKQDRICLFTVSDDGH-LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHG----- 212 (343)
T ss_dssp S-SEEEEEEGGGTEEEEEEECTTSC-EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTS-----
T ss_pred C-CEEEEecCCCCEEEEEEecCCCc-eeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCC-----
Confidence 9 5555555 899999999987221 00111 2333 3457889999997633555666899999999964210
Q ss_pred HHhhhcccccCCCCCCCCceEEe-------ecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 412 EFKAKTREQVNAPEDLPPQLLFI-------HQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 412 ~~~~~~~~~~~~~~~~p~~l~~~-------h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
....... +.+...+..++|+|++..+++++..++ |.+|++.
T Consensus 213 ----------------~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~ 261 (343)
T 1ri6_A 213 ----------------NIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVS 261 (343)
T ss_dssp ----------------CCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ----------------cEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEc
Confidence 0011111 112235778999999987877886666 9999986
No 148
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.81 E-value=6e-19 Score=188.49 Aligned_cols=234 Identities=12% Similarity=0.064 Sum_probs=167.3
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC---ceEEEEeCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD---EGYAIDWNPVAP 246 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~ 246 (479)
..+..++|+|++. ++++ +.||+|++||+.+ ++....+.+|.. .+.+++|||++.
T Consensus 17 ~~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~---------------------g~~~~~~~~~~~~~~~v~~~~~SpDg~ 73 (723)
T 1xfd_A 17 IHDPEAKWISDTE-FIYR-EQKGTVRLWNVET---------------------NTSTVLIEGKKIESLRAIRYEISPDRE 73 (723)
T ss_dssp CCCCCCCBSSSSC-BCCC-CSSSCEEEBCGGG---------------------CCCEEEECTTTTTTTTCSEEEECTTSS
T ss_pred ccccccEEcCCCc-EEEE-eCCCCEEEEECCC---------------------CcEEEEeccccccccccceEEECCCCC
Confidence 3467889999994 6666 7899999999987 455566666654 499999999998
Q ss_pred CeEEEEeCC---------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 247 GRLVSGDCN---------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 247 ~~l~sg~~d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+|++++.+ +.|.+||+.++.... .....+|...+..++|+|+|+ .||.++. +.|++||+.++. ..
T Consensus 74 -~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--l~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~-~~ 147 (723)
T 1xfd_A 74 -YALFSYNVEPIYQHSYTGYYVLSKIPHGDPQS--LDPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQ-AI 147 (723)
T ss_dssp -EEEEEESCCCCSSSCCCSEEEEEESSSCCCEE--CCCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSC-CE
T ss_pred -EEEEEecCccceeecceeeEEEEECCCCceEe--ccCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCc-eE
Confidence 89998764 788999998765422 223345666688999999998 7787775 899999998875 33
Q ss_pred eEEecCCCC------------------EEEEEEcCCCCcEEEEEeCCC--------------------------------
Q 039302 318 MSFKAHNAD------------------VNVISWNRLASCLLASGSDDG-------------------------------- 347 (479)
Q Consensus 318 ~~~~~h~~~------------------v~~l~~~p~~~~~l~sgs~dg-------------------------------- 347 (479)
.....+... +.+++|+|++ ..|++++.++
T Consensus 148 ~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 226 (723)
T 1xfd_A 148 RVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENP 226 (723)
T ss_dssp EEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCC
T ss_pred EEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCC
Confidence 333333333 3789999999 7777776543
Q ss_pred --eEEEEeCCCCCCCCceEEEeecC------CCCeEEEEEeCCCCCEEEEEeC----CCcEEEEECCCCCChHHHHHHhh
Q 039302 348 --TFSIHDLRLLKGGDSVVAHFEYH------KHPVTSIEWSPHEGSTLAVSSA----DNQLTIWDLSLEKDEEEEAEFKA 415 (479)
Q Consensus 348 --~i~iwDlr~~~~~~~~~~~~~~h------~~~I~~v~~sp~~~~~las~s~----Dg~I~iwdl~~~~~~~~~~~~~~ 415 (479)
.|++||+.+.. ....+..+ ...+.+++|+|++ .+|++.+. +..|.+||+..+..
T Consensus 227 ~~~l~~~d~~~~~----~~~~l~~~~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~~~~i~~~d~~~g~~--------- 292 (723)
T 1xfd_A 227 SISLHVIGLNGPT----HDLEMMPPDDPRMREYYITMVKWATST-KVAVTWLNRAQNVSILTLCDATTGVC--------- 292 (723)
T ss_dssp EEEEEEEESSSSC----CCEECCCCCCGGGSSEEEEEEEESSSS-EEEEEEEETTSCEEEEEEEETTTCCE---------
T ss_pred eeEEEEEECCCCc----eeEEeeCCccCCCccceeEEEEEeCCC-eEEEEEEcCCCCeEEEEEEeCCCCcc---------
Confidence 79999998776 34455543 5679999999966 77766643 35799999987631
Q ss_pred hcccccCCCCCCCCceEEeecCCCCe----eeEEEeCCCCcEEEE-EcCCC
Q 039302 416 KTREQVNAPEDLPPQLLFIHQGQKDL----KELHWHTQVPGMIVS-TAADG 461 (479)
Q Consensus 416 ~~~~~~~~~~~~p~~l~~~h~g~~~V----~~v~w~p~~~~ll~s-~~~dg 461 (479)
..++..+. ...+ ..++|+|++..+++. +..++
T Consensus 293 -------------~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 293 -------------TKKHEDES-EAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp -------------EEEEEEEC-SSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred -------------eEEEEecc-CCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 02222221 1223 388999999877765 54554
No 149
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.80 E-value=2.1e-18 Score=179.69 Aligned_cols=232 Identities=11% Similarity=0.035 Sum_probs=163.7
Q ss_pred CcceeEEEEecCCCcEEEEEeC-CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEeCCCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWAD-TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDWNPVAP 246 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~ 246 (479)
..+|++++|+|+| ..||+++. +|+++||++.. +. ...+..|. ..+..++|+|+ .
T Consensus 21 ~~~~~~~~~~~DG-~~la~~s~~~g~~~lw~~~~---------------------g~-~~~lt~~~~~~~~~~~~spd-~ 76 (582)
T 3o4h_A 21 AVEKYSLQGVVDG-DKLLVVGFSEGSVNAYLYDG---------------------GE-TVKLNREPINSVLDPHYGVG-R 76 (582)
T ss_dssp HSCEEEEEEEETT-TEEEEEEEETTEEEEEEEET---------------------TE-EEECCSSCCSEECEECTTCS-E
T ss_pred ccchheeecCCCC-CeEEEEEccCCceeEEEEcC---------------------CC-cEeeecccccccccccCCCC-e
Confidence 4579999999999 55566565 99999999743 22 34455555 58999999998 5
Q ss_pred CeEEEEeC---CCeEEEEecCC--CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 247 GRLVSGDC---NSCIHLWEPAS--DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 247 ~~l~sg~~---dg~I~lwd~~~--~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++++++. +....||.+.. .+.... .... ..+...+|+|+++..+++.+.++.+.|||+.+++ . ..+.
T Consensus 77 -~l~~~~~~~g~~~~~l~~~~~~~~g~~~~-l~~~----~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~-~-~~l~ 148 (582)
T 3o4h_A 77 -VILVRDVSKGAEQHALFKVNTSRPGEEQR-LEAV----KPMRILSGVDTGEAVVFTGATEDRVALYALDGGG-L-RELA 148 (582)
T ss_dssp -EEEEEECSTTSCCEEEEEEETTSTTCCEE-CTTS----CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE-E-EEEE
T ss_pred -EEEEeccCCCCcceEEEEEeccCCCcccc-ccCC----CCceeeeeCCCCCeEEEEecCCCCceEEEccCCc-E-EEee
Confidence 7887775 45566765543 222111 1111 1234668888886555555555556699998874 2 2333
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCC----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC--c
Q 039302 322 AHNADVNVISWNRLASCLLASGSDD----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN--Q 395 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~d----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg--~ 395 (479)
.+.. .+++|+|+| .+|++++.+ +.|++||+.++. ...+..|...+.+++|+|++ ..|+++..++ .
T Consensus 149 ~~~~--~~~~~spDG-~~la~~~~~~~~~~~i~~~d~~~g~-----~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~ 219 (582)
T 3o4h_A 149 RLPG--FGFVSDIRG-DLIAGLGFFGGGRVSLFTSNLSSGG-----LRVFDSGEGSFSSASISPGM-KVTAGLETAREAR 219 (582)
T ss_dssp EESS--CEEEEEEET-TEEEEEEEEETTEEEEEEEETTTCC-----CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEE
T ss_pred cCCC--ceEEECCCC-CEEEEEEEcCCCCeEEEEEcCCCCC-----ceEeecCCCccccceECCCC-CEEEEccCCCeeE
Confidence 3333 889999999 888877777 789999998776 34677888999999999965 8888888888 8
Q ss_pred EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEE--------EeCCCCcEEEEEcCCC-ceEEe
Q 039302 396 LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELH--------WHTQVPGMIVSTAADG-FNILM 466 (479)
Q Consensus 396 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~--------w~p~~~~ll~s~~~dg-i~iw~ 466 (479)
|++||+.... ......+...+..++ |+|++ .++++++.++ +++|.
T Consensus 220 i~~~d~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 220 LVTVDPRDGS-------------------------VEDLELPSKDFSSYRPTAITWLGYLPDG-RLAVVARREGRSAVFI 273 (582)
T ss_dssp EEEECTTTCC-------------------------EEECCCSCSHHHHHCCSEEEEEEECTTS-CEEEEEEETTEEEEEE
T ss_pred EEEEcCCCCc-------------------------EEEccCCCcChhhhhhccccceeEcCCC-cEEEEEEcCCcEEEEE
Confidence 9999998763 111112223466666 99999 7888888888 89998
Q ss_pred e
Q 039302 467 P 467 (479)
Q Consensus 467 ~ 467 (479)
+
T Consensus 274 ~ 274 (582)
T 3o4h_A 274 D 274 (582)
T ss_dssp T
T ss_pred E
Confidence 7
No 150
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.78 E-value=9.9e-18 Score=178.62 Aligned_cols=240 Identities=13% Similarity=0.152 Sum_probs=168.2
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|.+++|+|+ ..++++. ++.|++||+.. .+. ..+..+...+.+++|+|++. +
T Consensus 81 ~~~v~~~~~spd-~~~~~~~--~~~i~~~d~~~---------------------~~~-~~l~~~~~~~~~~~~SpdG~-~ 134 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT--QGGLVGFDMLA---------------------RKV-TYLFDTNEETASLDFSPVGD-R 134 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE--TTEEEEEETTT---------------------TEE-EEEECCTTCCTTCEECTTSS-E
T ss_pred ccCceeEEECCC-CeEEEEE--CCEEEEEECCC---------------------Cce-EEccCCcccccCCcCCCCCC-E
Confidence 357999999999 4666653 49999999976 222 33445667788999999998 8
Q ss_pred EEEEeCCCeEEEEecCC-----CCccccCCCCcccCCC--------------cEEEEEECCCCCcEEEEEe---------
Q 039302 249 LVSGDCNSCIHLWEPAS-----DATWNVDPNPFIGHAA--------------SVEDLQWSPTESDVFASCS--------- 300 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~-----~~~~~~~~~~~~~h~~--------------~V~~l~~sp~~~~~l~s~s--------- 300 (479)
|+++ .++.|++|++.+ +....+ ...+.. .+.++.|+|+++ .|++++
T Consensus 135 la~~-~~~~i~v~~~~~~~~~~g~~~~~----~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~ 208 (706)
T 2z3z_A 135 VAYV-RNHNLYIARGGKLGEGMSRAIAV----TIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPT 208 (706)
T ss_dssp EEEE-ETTEEEEEECBCTTSCCCCCEES----CSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCE
T ss_pred EEEE-ECCeEEEEecCcccccCCCcEEe----ccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceE
Confidence 8885 589999999987 543221 111222 258899999999 777776
Q ss_pred ------------------------CCCcEEEEEcCCCCceeeEE-ecCCCCEEEEEEcCCCCcEEEEEeCCC-----eEE
Q 039302 301 ------------------------VDGNIAIWDTRVGKSALMSF-KAHNADVNVISWNRLASCLLASGSDDG-----TFS 350 (479)
Q Consensus 301 ------------------------~dg~I~iwD~~~~~~~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg-----~i~ 350 (479)
.+..|.+||+.++....... ..|...+.+++|+|++ ..|++++.++ .|+
T Consensus 209 ~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~v~ 287 (706)
T 2z3z_A 209 PIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDE-NILYVAEVNRAQNECKVN 287 (706)
T ss_dssp EEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTS-SEEEEEEECTTSCEEEEE
T ss_pred EeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCC-CEEEEEEeCCCCCeeEEE
Confidence 44679999998875211111 2566789999999999 7777777665 899
Q ss_pred EEeCCCCCCCCceEEEee-cCCC---CeEEEEEeC--CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCC
Q 039302 351 IHDLRLLKGGDSVVAHFE-YHKH---PVTSIEWSP--HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAP 424 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~-~h~~---~I~~v~~sp--~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~ 424 (479)
+||+.++.. ...... .+.. .+.++.|+| ++ .+|++++.|+.++||.+.....
T Consensus 288 ~~d~~~g~~---~~~~~~~~~~~~~~~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~~------------------ 345 (706)
T 2z3z_A 288 AYDAETGRF---VRTLFVETDKHYVEPLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTGR------------------ 345 (706)
T ss_dssp EEETTTCCE---EEEEEEEECSSCCCCCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTSC------------------
T ss_pred EEECCCCce---eeEEEEccCCCeECccCCceeecCCCC-EEEEEEccCCccEEEEEECCCC------------------
Confidence 999998731 222221 2222 347789999 76 7899999999999998863211
Q ss_pred CCCCCceEEeecCCCCeee-EEEeCCCCcEEEEEcCCC---ceEEeee
Q 039302 425 EDLPPQLLFIHQGQKDLKE-LHWHTQVPGMIVSTAADG---FNILMPS 468 (479)
Q Consensus 425 ~~~p~~l~~~h~g~~~V~~-v~w~p~~~~ll~s~~~dg---i~iw~~~ 468 (479)
.+.....+...+.. ++|+|++..+++++..++ +.||.+.
T Consensus 346 -----~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 388 (706)
T 2z3z_A 346 -----LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCID 388 (706)
T ss_dssp -----EEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEE
T ss_pred -----EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEE
Confidence 12222233345766 899999987877777765 5777653
No 151
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.78 E-value=1.8e-17 Score=184.25 Aligned_cols=243 Identities=10% Similarity=-0.001 Sum_probs=175.5
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC-CCCCCeE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN-PVAPGRL 249 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s-~~~~~~l 249 (479)
.+..++|+|++. .||.+ .++.|++|++... .+.... .. .......+..|...+.+++|+ |++. +|
T Consensus 246 ~~~~~~~SpDG~-~la~~-~~~~i~~~d~~~~--~l~~l~---~~------~~~~~~~~~~~~~~v~~~~~S~pdG~-~l 311 (1045)
T 1k32_A 246 DYYPRHLNTDGR-RILFS-KGGSIYIFNPDTE--KIEKIE---IG------DLESPEDRIISIPSKFAEDFSPLDGD-LI 311 (1045)
T ss_dssp SSCEEEEEESSS-CEEEE-ETTEEEEECTTTC--CEEECC---CC------CCCBCCSEEEECGGGGEEEEEECGGG-CE
T ss_pred CcceeeEcCCCC-EEEEE-eCCEEEEecCCce--Eeeeec---cC------cccccccccccccccceeeecCCCCC-EE
Confidence 477889999995 45554 4899999998331 000000 00 000000111245578999999 9998 88
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCC-cEEEEEECCCCCcEEEEEeCCCcEE-EEEcCCCCceeeEEecCCCCE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAA-SVEDLQWSPTESDVFASCSVDGNIA-IWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~l~s~s~dg~I~-iwD~~~~~~~~~~~~~h~~~v 327 (479)
++++ ++.|.+|++..+.. ..+..|.. .+.+++|+ +++ .|++++.++.|. +||+..+. ...+..|...+
T Consensus 312 a~~~-~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~~s-dg~-~l~~~s~~~~l~~~~d~~~~~--~~~l~~~~~~~ 381 (1045)
T 1k32_A 312 AFVS-RGQAFIQDVSGTYV-----LKVPEPLRIRYVRRGGD-TKV-AFIHGTREGDFLGIYDYRTGK--AEKFEENLGNV 381 (1045)
T ss_dssp EEEE-TTEEEEECTTSSBE-----EECSCCSCEEEEEECSS-SEE-EEEEEETTEEEEEEEETTTCC--EEECCCCCCSE
T ss_pred EEEE-cCEEEEEcCCCCce-----EEccCCCcceEEeeeEc-CCC-eEEEEECCCceEEEEECCCCC--ceEecCCccce
Confidence 8887 88999999876432 22455666 89999999 887 788888888888 99998764 33444778899
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC----------cEE
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN----------QLT 397 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg----------~I~ 397 (479)
..++|+|++ .+|++++.++.|++||+.++. ....+..|...+.+++|+|++ .+|++++.++ .|+
T Consensus 382 ~~~~~SpDG-~~la~~~~~~~v~~~d~~tg~----~~~~~~~~~~~v~~~~~SpDG-~~la~~~~~~~~~~~~~~~~~i~ 455 (1045)
T 1k32_A 382 FAMGVDRNG-KFAVVANDRFEIMTVDLETGK----PTVIERSREAMITDFTISDNS-RFIAYGFPLKHGETDGYVMQAIH 455 (1045)
T ss_dssp EEEEECTTS-SEEEEEETTSEEEEEETTTCC----EEEEEECSSSCCCCEEECTTS-CEEEEEEEECSSTTCSCCEEEEE
T ss_pred eeeEECCCC-CEEEEECCCCeEEEEECCCCc----eEEeccCCCCCccceEECCCC-CeEEEEecCccccccCCCCCeEE
Confidence 999999999 899999999999999999877 666676899999999999965 7777776644 899
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+||+.... +.....+...+..++|+|++..+++.+..++..+|...
T Consensus 456 l~d~~~g~-------------------------~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 456 VYDMEGRK-------------------------IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EEETTTTE-------------------------EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred EEECCCCc-------------------------EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 99998652 12222223458889999999866655555556777644
No 152
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=2.7e-17 Score=159.03 Aligned_cols=231 Identities=11% Similarity=0.015 Sum_probs=157.7
Q ss_pred EEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEeCCCCCCeEEEEe
Q 039302 175 IRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDWNPVAPGRLVSGD 253 (479)
Q Consensus 175 v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~l~sg~ 253 (479)
+++.+.+ .++++++.++.|++||+.+ .+.+..+..+. ..+..++|+|++...++++.
T Consensus 5 ~~~~~~~-~~~v~~~~~~~v~~~d~~~---------------------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~ 62 (349)
T 1jmx_B 5 PALKAGH-EYMIVTNYPNNLHVVDVAS---------------------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN 62 (349)
T ss_dssp CCCCTTC-EEEEEEETTTEEEEEETTT---------------------TEEEEEEECSSCCSSCEEEECTTSSEEEEEET
T ss_pred ccccCCC-EEEEEeCCCCeEEEEECCC---------------------CcEEEEEecCCCCCCceeEECCCCCEEEEEeC
Confidence 3556655 7888999999999999986 44455554433 25779999999972345666
Q ss_pred CCCeEEEEecCCCCccccCCCCcc-cC-----CCcEEEEEECCCCCcEEEEEeCC------------CcEEEEEcCCCCc
Q 039302 254 CNSCIHLWEPASDATWNVDPNPFI-GH-----AASVEDLQWSPTESDVFASCSVD------------GNIAIWDTRVGKS 315 (479)
Q Consensus 254 ~dg~I~lwd~~~~~~~~~~~~~~~-~h-----~~~V~~l~~sp~~~~~l~s~s~d------------g~I~iwD~~~~~~ 315 (479)
.++.|.+||+.++.... .+. .+ ...+.+++|+|+++ .+++++.+ +.|.+||+.+++.
T Consensus 63 ~~~~i~~~d~~t~~~~~----~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 63 HYGDIYGIDLDTCKNTF----HANLSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp TTTEEEEEETTTTEEEE----EEESCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred CCCcEEEEeCCCCcEEE----EEEcccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECCCccc
Confidence 78999999997754321 111 11 23377899999999 67766654 8999999987431
Q ss_pred --eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-----------------------
Q 039302 316 --ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH----------------------- 370 (479)
Q Consensus 316 --~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h----------------------- 370 (479)
.+..+. +...+.+++|+|++ .+++ ++. .|.+||+.+++ .+..+..+
T Consensus 138 ~~~~~~~~-~~~~~~~~~~s~dg-~l~~-~~~--~i~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (349)
T 1jmx_B 138 AKPVRTFP-MPRQVYLMRAADDG-SLYV-AGP--DIYKMDVKTGK----YTVALPLRNWNRKGYSAPDVLYFWPHQSPRH 208 (349)
T ss_dssp BCCSEEEE-CCSSCCCEEECTTS-CEEE-ESS--SEEEECTTTCC----EEEEECSTTCCCTTBCCCBCCCCCCCCCTTC
T ss_pred cceeeecc-CCCcccceeECCCC-cEEE-ccC--cEEEEeCCCCc----eeccccccccCCccccCccceeeecCCCcce
Confidence 222333 34468899999999 5444 443 49999998766 34443322
Q ss_pred ---------------------------------------------CCCeEEEEEeC-CCCCEEEEEeCCCcEEEEECCCC
Q 039302 371 ---------------------------------------------KHPVTSIEWSP-HEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 371 ---------------------------------------------~~~I~~v~~sp-~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
...+.+++|+| ++ .+|+++ ++.|.+||+...
T Consensus 209 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~ 285 (349)
T 1jmx_B 209 EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQR 285 (349)
T ss_dssp EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT-TEEEEE--ESEEEEEETTTT
T ss_pred eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCC-CEEEEE--cCeEEEEECccC
Confidence 12455777888 66 677777 889999999876
Q ss_pred CChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 405 KDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
+ ++........+.+++|+|++..++++ +.++ |.+|++.+.
T Consensus 286 ~-------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 286 K-------------------------LIKAANLDHTYYCVAFDKKGDKLYLG-GTFNDLAVFNPDTL 326 (349)
T ss_dssp E-------------------------EEEEEECSSCCCEEEECSSSSCEEEE-SBSSEEEEEETTTT
T ss_pred e-------------------------EEEEEcCCCCccceEECCCCCEEEEe-cCCCeEEEEecccc
Confidence 3 22222222457899999999767664 4445 999998653
No 153
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.76 E-value=1.9e-16 Score=153.52 Aligned_cols=218 Identities=11% Similarity=0.065 Sum_probs=149.4
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec---------CCCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG---------GHKD 234 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~h~~ 234 (479)
....|...+..++|+|++..++++...++.|.+|++..... ...+..+. .+..
T Consensus 80 ~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~------------------~~~~~~~~~~~~~p~~~~~~~ 141 (347)
T 3hfq_A 80 TVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA------------------LTLTDTVQHSGHGPRPEQDGS 141 (347)
T ss_dssp EEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC------------------EEEEEEEECCCCCSSTTCSSC
T ss_pred eeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC------------------eeecceeecCCCCCCccccCC
Confidence 44567888999999999965655555789999999964110 01111111 1233
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC-
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV- 312 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~- 312 (479)
.+.+++|+|++. .++++..++.|.+|++...+.... ...+.. ....+..++|+|+++.+++++..++.|.+|++..
T Consensus 142 ~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~-~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~ 219 (347)
T 3hfq_A 142 HIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSE-QSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQ 219 (347)
T ss_dssp CEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEE-EEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred CceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEE-eeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 588999999998 888888899999999983332211 011111 2336788999999985566677889999999885
Q ss_pred -CCc-eeeEEecCC------CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 313 -GKS-ALMSFKAHN------ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 313 -~~~-~~~~~~~h~------~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
+.. .+..+.... ..+..++|+|++..+++++..++.|.+||+..... ...+..+..+...+..++|+|++
T Consensus 220 ~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~-~~~~~~~~~~~~~~~~~~~spdg- 297 (347)
T 3hfq_A 220 TGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH-LTLIQQISTEGDFPRDFDLDPTE- 297 (347)
T ss_dssp TTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC-EEEEEEEECSSSCCCEEEECTTS-
T ss_pred CCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc-EEEeEEEecCCCCcCeEEECCCC-
Confidence 221 122232222 34889999999944557777899999999973221 12566667677778999999966
Q ss_pred CEEEEEeC-CCcEEEEECCC
Q 039302 385 STLAVSSA-DNQLTIWDLSL 403 (479)
Q Consensus 385 ~~las~s~-Dg~I~iwdl~~ 403 (479)
.+|++++. ++.|.+|++..
T Consensus 298 ~~l~v~~~~~~~v~v~~~d~ 317 (347)
T 3hfq_A 298 AFVVVVNQNTDNATLYARDL 317 (347)
T ss_dssp SEEEEEETTTTEEEEEEECT
T ss_pred CEEEEEEcCCCcEEEEEEeC
Confidence 66666665 58999996654
No 154
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.75 E-value=5.7e-17 Score=180.32 Aligned_cols=245 Identities=14% Similarity=0.099 Sum_probs=181.6
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+.+|.+.+.++.|+++ .++++++.+|.+.||.+.. .......+..|. .+..++|+|
T Consensus 198 ~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~--------------------~g~~~~~l~~~~-~~~~~~~Sp 254 (1045)
T 1k32_A 198 KIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDL--------------------DGKDLRKHTSFT-DYYPRHLNT 254 (1045)
T ss_dssp EEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEET--------------------TSCSCEECCCCC-SSCEEEEEE
T ss_pred ECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeC--------------------CCCcceEecCCC-CcceeeEcC
Confidence 45799999999999987 5777888899999998765 133445555555 467789999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCC------CCcccCCCcEEEEEEC-CCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDP------NPFIGHAASVEDLQWS-PTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~------~~~~~h~~~V~~l~~s-p~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
++. .|+++. ++.|++|++.......... .....|...+.+++|+ |+++ .+++++ ++.|.+|++..+.
T Consensus 255 DG~-~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~~-- 328 (1045)
T 1k32_A 255 DGR-RILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTY-- 328 (1045)
T ss_dssp SSS-CEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSSB--
T ss_pred CCC-EEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCCc--
Confidence 998 888875 8999999984322110000 0011245578999999 9998 677776 8899999998764
Q ss_pred eeEEecCCC-CEEEEEEcCCCCcEEEEEeCCCeEE-EEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 317 LMSFKAHNA-DVNVISWNRLASCLLASGSDDGTFS-IHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 317 ~~~~~~h~~-~v~~l~~~p~~~~~l~sgs~dg~i~-iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
...+..|.. .+..++|+ ++ ..|++++.++.+. +||+.... ...+..|...+..++|+|++ .+|++++.++
T Consensus 329 ~~~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~-----~~~l~~~~~~~~~~~~SpDG-~~la~~~~~~ 400 (1045)
T 1k32_A 329 VLKVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGK-----AEKFEENLGNVFAMGVDRNG-KFAVVANDRF 400 (1045)
T ss_dssp EEECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCC-----EEECCCCCCSEEEEEECTTS-SEEEEEETTS
T ss_pred eEEccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCC-----ceEecCCccceeeeEECCCC-CEEEEECCCC
Confidence 344566777 89999999 87 7888888888888 99988654 34455788899999999965 9999999999
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC----------CceE
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD----------GFNI 464 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d----------gi~i 464 (479)
.|++||+..+.. ......+...|..++|+|++..+++++..+ .|.+
T Consensus 401 ~v~~~d~~tg~~------------------------~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 401 EIMTVDLETGKP------------------------TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp EEEEEETTTCCE------------------------EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred eEEEEECCCCce------------------------EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 999999987631 111112234689999999998666655543 3888
Q ss_pred Eeeec
Q 039302 465 LMPSN 469 (479)
Q Consensus 465 w~~~~ 469 (479)
|++..
T Consensus 457 ~d~~~ 461 (1045)
T 1k32_A 457 YDMEG 461 (1045)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 87643
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.75 E-value=6.4e-17 Score=172.73 Aligned_cols=236 Identities=16% Similarity=0.162 Sum_probs=156.2
Q ss_pred ceeEEEEecCCCcEEEEEeC---------CceEEEEeCCCCcccccccccccCCCCCccccCCCc--EEecCCCCceEEE
Q 039302 171 CVNRIRAMSQNPHICASWAD---------TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL--VKFGGHKDEGYAI 239 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~---------dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l 239 (479)
.|.+++|+|+| +.||+++. ++.|++||+... +.+ ..+ ...+..+
T Consensus 61 ~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~d~~~g---------------------~~~~~~~l---~~~~~~~ 115 (719)
T 1z68_A 61 NASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIYDLSNG---------------------EFVRGNEL---PRPIQYL 115 (719)
T ss_dssp TCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTT---------------------EECCSSCC---CSSBCCE
T ss_pred ceeeEEECCCC-CeEEEEecCceeEEeecceEEEEEECCCC---------------------ccccceec---Ccccccc
Confidence 39999999999 56666555 689999999872 110 111 2458889
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcE-----------------EEEEECCCCCcEEEEEeCC
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASV-----------------EDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V-----------------~~l~~sp~~~~~l~s~s~d 302 (479)
+|||+|+ .|+.+. ++.|++|++.++....+ ...++...| .+++|+|+|+ .|++++.|
T Consensus 116 ~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l---~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d 189 (719)
T 1z68_A 116 CWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQI---TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFN 189 (719)
T ss_dssp EECSSTT-CEEEEE-TTEEEEESSTTSCCEEC---CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEE
T ss_pred eECCCCC-EEEEEE-CCeEEEEeCCCCCcEEE---ecCCCcCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEEC
Confidence 9999998 888886 78999999977544221 112222222 4899999999 78887755
Q ss_pred C----------------------------------cEEEEEcCCCCce----e---eEEecCCCCEEEEEEcCCCCcEEE
Q 039302 303 G----------------------------------NIAIWDTRVGKSA----L---MSFKAHNADVNVISWNRLASCLLA 341 (479)
Q Consensus 303 g----------------------------------~I~iwD~~~~~~~----~---~~~~~h~~~v~~l~~~p~~~~~l~ 341 (479)
. .|++||+.++... + ..+..|...+..++|+|++ .+++
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~-~~~~ 268 (719)
T 1z68_A 190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDE-RVCL 268 (719)
T ss_dssp CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSS-EEEE
T ss_pred CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCC-eEEE
Confidence 2 7889999876421 0 1123577789999999997 7777
Q ss_pred EEeCC----CeEEEEe----CCCCCCCCceEEEe----ecCCCCeE-----EEEEeCCCCCEEE-EEeCCCc--EEEEEC
Q 039302 342 SGSDD----GTFSIHD----LRLLKGGDSVVAHF----EYHKHPVT-----SIEWSPHEGSTLA-VSSADNQ--LTIWDL 401 (479)
Q Consensus 342 sgs~d----g~i~iwD----lr~~~~~~~~~~~~----~~h~~~I~-----~v~~sp~~~~~la-s~s~Dg~--I~iwdl 401 (479)
+.... ..|.+|| +.+++. ...+ ..|...+. .+.|+|++..+++ ++..++. |.+||+
T Consensus 269 ~~~~~~~~~~~l~~~d~~~~~~~g~~----~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~ 344 (719)
T 1z68_A 269 QWLKRVQNVSVLSICDFREDWQTWDC----PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKD 344 (719)
T ss_dssp EEEESSTTEEEEEEEEECSSSSSEEC----CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESS
T ss_pred EEeccccCeEEEEEEcccCCCCCCce----EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEEC
Confidence 75433 2488899 766552 2222 46777776 8999997744444 4545664 555665
Q ss_pred CCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC----CC-ceEEeee
Q 039302 402 SLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA----DG-FNILMPS 468 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~----dg-i~iw~~~ 468 (479)
.... ......+...|..+.+. ++..+++++.. ++ .++|.+.
T Consensus 345 ~~~~-------------------------~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~ 390 (719)
T 1z68_A 345 TVEN-------------------------AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRIS 390 (719)
T ss_dssp CSTT-------------------------CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEE
T ss_pred CCCc-------------------------eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEe
Confidence 4432 11112233457777777 77667777665 34 8888875
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.75 E-value=1.3e-16 Score=166.14 Aligned_cols=199 Identities=9% Similarity=0.007 Sum_probs=145.0
Q ss_pred EEecCC-cceeEEEEecCCCcEEEEEeC---CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEE
Q 039302 164 RKVAHQ-GCVNRIRAMSQNPHICASWAD---TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAI 239 (479)
Q Consensus 164 ~~~~H~-~~V~~v~~~p~~~~~lat~s~---dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 239 (479)
++..|. ..|..+.|+|+ .++++++. +....||.+.... .+... .+..+. .+...
T Consensus 58 ~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~~~------------------~g~~~-~l~~~~-~~~~~ 115 (582)
T 3o4h_A 58 KLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNTSR------------------PGEEQ-RLEAVK-PMRIL 115 (582)
T ss_dssp ECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEETTS------------------TTCCE-ECTTSC-SBEEE
T ss_pred eeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEeccC------------------CCccc-cccCCC-Cceee
Confidence 445555 68999999998 57777665 4555666554300 01111 232222 34466
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC----CcEEEEEcCCCCc
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----GNIAIWDTRVGKS 315 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----g~I~iwD~~~~~~ 315 (479)
+|+|++.+.+++.+.++.+.+||+.++.... +..+.. .+++|+|+|+ .+++++.+ +.|++||+.+++
T Consensus 116 ~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-----l~~~~~--~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g~- 186 (582)
T 3o4h_A 116 SGVDTGEAVVFTGATEDRVALYALDGGGLRE-----LARLPG--FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSGG- 186 (582)
T ss_dssp EEEECSSCEEEEEECSSCEEEEEEETTEEEE-----EEEESS--CEEEEEEETT-EEEEEEEEETTEEEEEEEETTTCC-
T ss_pred eeCCCCCeEEEEecCCCCceEEEccCCcEEE-----eecCCC--ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCCCCC-
Confidence 8888887655555555666699997754321 222323 7899999999 88877766 789999998875
Q ss_pred eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCCeEEEE--------EeCCCCC
Q 039302 316 ALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE--------WSPHEGS 385 (479)
Q Consensus 316 ~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~--------~sp~~~~ 385 (479)
...+..|...+..++|+|++ ..|+++..++ .|++||+.++. .. .+..|...+..+. |+|++ .
T Consensus 187 -~~~l~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~i~~~d~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~spdg-~ 258 (582)
T 3o4h_A 187 -LRVFDSGEGSFSSASISPGM-KVTAGLETAREARLVTVDPRDGS----VE-DLELPSKDFSSYRPTAITWLGYLPDG-R 258 (582)
T ss_dssp -CEEECCSSCEEEEEEECTTS-CEEEEEECSSCEEEEEECTTTCC----EE-ECCCSCSHHHHHCCSEEEEEEECTTS-C
T ss_pred -ceEeecCCCccccceECCCC-CEEEEccCCCeeEEEEEcCCCCc----EE-EccCCCcChhhhhhccccceeEcCCC-c
Confidence 44677888889999999999 7888888888 89999998876 45 6777887777777 99977 9
Q ss_pred EEEEEeCCCcEEEEEC
Q 039302 386 TLAVSSADNQLTIWDL 401 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl 401 (479)
++++++.|+++++|++
T Consensus 259 ~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 259 LAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEEETTEEEEEET
T ss_pred EEEEEEcCCcEEEEEE
Confidence 9999999999999999
No 157
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.74 E-value=2.1e-15 Score=147.49 Aligned_cols=251 Identities=8% Similarity=0.005 Sum_probs=156.0
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCC-CCcccccccccccCCCCCccccCCCcE--EecCCCCceEEEEeCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFR-SHLNALAESETVAGHGAPQVLNQSPLV--KFGGHKDEGYAIDWNP 243 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~s~ 243 (479)
++...+..++|+|++ .+|++++.+ .|.+|++. . ++... ....+. ...+++|+|
T Consensus 37 ~~~~~~~~~a~spdg-~~l~~~~~~-~v~~~~~~~~---------------------g~~~~~~~~~~~g-~~~~~~~sp 92 (365)
T 1jof_A 37 PQDEPISWMTFDHER-KNIYGAAMK-KWSSFAVKSP---------------------TEIVHEASHPIGG-HPRANDADT 92 (365)
T ss_dssp CTTCCCSEEEECTTS-SEEEEEEBT-EEEEEEEEET---------------------TEEEEEEEEECCS-SGGGGCTTS
T ss_pred CCCCCCcEEEECCCC-CEEEEEccc-eEEEEEECCC---------------------CCEEEeeEeecCC-CCccEEECC
Confidence 345578899999999 555666666 99999986 3 22211 111112 355689999
Q ss_pred CCCCe--EEEEe-------------CCCeEEEEecCCCCccccCCCCc-ccCCCcEEEEEECCCCCcEEEEEe-CCCcEE
Q 039302 244 VAPGR--LVSGD-------------CNSCIHLWEPASDATWNVDPNPF-IGHAASVEDLQWSPTESDVFASCS-VDGNIA 306 (479)
Q Consensus 244 ~~~~~--l~sg~-------------~dg~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~ 306 (479)
++. + +++++ .+|.+.+|++...+........+ ..+...+.+++|+|+++ +++++. .++.|+
T Consensus 93 dg~-~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~ 170 (365)
T 1jof_A 93 NTR-AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLW 170 (365)
T ss_dssp CCE-EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEE
T ss_pred CCC-EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEE
Confidence 986 4 34443 68999999997433221100111 12456799999999998 555554 478999
Q ss_pred EEEcC-CCCce-eeEEe--cCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceE---EEee-------cCC
Q 039302 307 IWDTR-VGKSA-LMSFK--AHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVV---AHFE-------YHK 371 (479)
Q Consensus 307 iwD~~-~~~~~-~~~~~--~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~---~~~~-------~h~ 371 (479)
+||+. +++.. +..+. .|...+..++|+|++ .+|++++ .++.|.+|++..... ... ..+. +|.
T Consensus 171 ~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~~~~~~g--~~~~~~~~~~~~~~~~~g~~ 247 (365)
T 1jof_A 171 THRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYVIDPATH--MPVYTHHSFPLIPPGIPDRD 247 (365)
T ss_dssp EEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTTC--CEEEEEEEEESSCTTCCCBC
T ss_pred EEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEEEeCCCC--cEEEccceEEcCCCCcCCcc
Confidence 99998 55421 22233 246679999999999 6665555 578999998753211 021 1222 122
Q ss_pred C------CeEEEE-EeCCCCCEEEEEeC-CC-----cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE-EeecC
Q 039302 372 H------PVTSIE-WSPHEGSTLAVSSA-DN-----QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL-FIHQG 437 (479)
Q Consensus 372 ~------~I~~v~-~sp~~~~~las~s~-Dg-----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~-~~h~g 437 (479)
. .+..++ |+|++ ++|++++. ++ +|.+|++...... ..+. .....
T Consensus 248 ~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~~---------------------~~~~~~~~~~ 305 (365)
T 1jof_A 248 PETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGSI---------------------EKQLFLSPTP 305 (365)
T ss_dssp TTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSCE---------------------EEEEEEEECS
T ss_pred cccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCCE---------------------EEeeeeeecC
Confidence 2 588999 99966 66666554 33 8999999632110 0111 12112
Q ss_pred CCCeeeEEEeC---CCCcEEEEEcCCC-ceEEeee
Q 039302 438 QKDLKELHWHT---QVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 438 ~~~V~~v~w~p---~~~~ll~s~~~dg-i~iw~~~ 468 (479)
...+..++|+| ++.+++++...++ |.+|++.
T Consensus 306 ~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 23578899999 6865555544445 9999874
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.73 E-value=1.1e-15 Score=147.55 Aligned_cols=196 Identities=10% Similarity=0.052 Sum_probs=140.8
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC------CCceEEEEeCCC
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH------KDEGYAIDWNPV 244 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~s~~ 244 (479)
.+..++|+|++..+++++..++.|.+||+.. .+.+..+..+ ...+.+++|+|+
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t---------------------~~~~~~~~~~~~~~~~~~~~~~~~~spd 102 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDT---------------------CKNTFHANLSSVPGEVGRSMYSFAISPD 102 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTT---------------------TEEEEEEESCCSTTEEEECSSCEEECTT
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCC---------------------CcEEEEEEcccccccccccccceEECCC
Confidence 6889999999966777878899999999976 3333334322 223788999999
Q ss_pred CCCeEEEEeCC------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 245 APGRLVSGDCN------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 245 ~~~~l~sg~~d------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
+. +|++++.+ +.|.+||+.++.... ......+...+.+++|+|+++ +++ ++ +.|.+||+.+
T Consensus 103 g~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~ 175 (349)
T 1jmx_B 103 GK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAK--PVRTFPMPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKT 175 (349)
T ss_dssp SS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBC--CSEEEECCSSCCCEEECTTSC-EEE-ES--SSEEEECTTT
T ss_pred CC-EEEEEcccccccccccccCCCeEEEEECCCccccc--eeeeccCCCcccceeECCCCc-EEE-cc--CcEEEEeCCC
Confidence 98 88888765 899999997643211 111222344688999999998 665 33 4499999987
Q ss_pred CCceeeEEecC--------------------------------------------------------------------C
Q 039302 313 GKSALMSFKAH--------------------------------------------------------------------N 324 (479)
Q Consensus 313 ~~~~~~~~~~h--------------------------------------------------------------------~ 324 (479)
++ .+..+..+ .
T Consensus 176 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (349)
T 1jmx_B 176 GK-YTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLT 254 (349)
T ss_dssp CC-EEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECS
T ss_pred Cc-eeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCC
Confidence 75 33333211 1
Q ss_pred CCEEEEEEcC-CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 325 ADVNVISWNR-LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 325 ~~v~~l~~~p-~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
..+..++|+| ++ .+|+++ ++.|.+||+.+.+ .+..+.. ...+.+++|+|++ .+|++++.++.|.+||+.+
T Consensus 255 ~~~~~~~~sp~dg-~~l~~~--~~~v~~~d~~~~~----~~~~~~~-~~~~~~~~~s~dg-~~l~~~~~~~~v~v~d~~~ 325 (349)
T 1jmx_B 255 ELYFTGLRSPKDP-NQIYGV--LNRLAKYDLKQRK----LIKAANL-DHTYYCVAFDKKG-DKLYLGGTFNDLAVFNPDT 325 (349)
T ss_dssp SCEEEEEECSSCT-TEEEEE--ESEEEEEETTTTE----EEEEEEC-SSCCCEEEECSSS-SCEEEESBSSEEEEEETTT
T ss_pred CcceeeEecCCCC-CEEEEE--cCeEEEEECccCe----EEEEEcC-CCCccceEECCCC-CEEEEecCCCeEEEEeccc
Confidence 1355778889 88 677776 8899999999876 5666653 3457899999966 6666678899999999987
Q ss_pred C
Q 039302 404 E 404 (479)
Q Consensus 404 ~ 404 (479)
.
T Consensus 326 ~ 326 (349)
T 1jmx_B 326 L 326 (349)
T ss_dssp T
T ss_pred c
Confidence 6
No 159
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.72 E-value=2.6e-17 Score=175.80 Aligned_cols=194 Identities=12% Similarity=0.124 Sum_probs=138.0
Q ss_pred EEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC---ceEEEEeCCCCCCeEE
Q 039302 174 RIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD---EGYAIDWNPVAPGRLV 250 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~s~~~~~~l~ 250 (479)
.++|+|++ .++++ +.+|+|++||+.. +++...+.+|.. .+.+++|||+++ +|+
T Consensus 20 ~~~~s~dg-~~~~~-~~d~~i~~~~~~~---------------------g~~~~~~~~~~~~~~~~~~~~~SpDg~-~la 75 (719)
T 1z68_A 20 FPNWISGQ-EYLHQ-SADNNIVLYNIET---------------------GQSYTILSNRTMKSVNASNYGLSPDRQ-FVY 75 (719)
T ss_dssp CCEESSSS-EEEEE-CTTSCEEEEESSS---------------------CCEEEEECHHHHHTTTCSEEEECTTSS-EEE
T ss_pred ccEECCCC-eEEEE-cCCCCEEEEEcCC---------------------CcEEEEEccccccccceeeEEECCCCC-eEE
Confidence 67999999 67666 5699999999987 444455544432 389999999998 888
Q ss_pred EEeC---------CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 251 SGDC---------NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 251 sg~~---------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
+++. ++.|++||+.++.... ...+ ...+.+++|||+|+ .|+.++ ++.|++||+.++........
T Consensus 76 ~~~~~~~~~~~s~~~~i~~~d~~~g~~~~--~~~l---~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~~~~l~~~ 148 (719)
T 1z68_A 76 LESDYSKLWRYSYTATYYIYDLSNGEFVR--GNEL---PRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDPPFQITFN 148 (719)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEECC--SSCC---CSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSCCEECCCC
T ss_pred EEecCceeEEeecceEEEEEECCCCcccc--ceec---CcccccceECCCCC-EEEEEE-CCeEEEEeCCCCCcEEEecC
Confidence 8876 7899999998754310 0112 24688899999999 777775 78999999988753222222
Q ss_pred cCCCCE-----------------EEEEEcCCCCcEEEEEeCCC----------------------------------eEE
Q 039302 322 AHNADV-----------------NVISWNRLASCLLASGSDDG----------------------------------TFS 350 (479)
Q Consensus 322 ~h~~~v-----------------~~l~~~p~~~~~l~sgs~dg----------------------------------~i~ 350 (479)
++...| .+++|+|++ ..||+++.|. .|+
T Consensus 149 ~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG-~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~ 227 (719)
T 1z68_A 149 GRENKIFNGIPDWVYEEEMLATKYALWWSPNG-KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF 227 (719)
T ss_dssp CBTTTEEESSCCHHHHHHTTCSSCCEEECTTS-SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CCcCCeEcccccceeeeecccCcccEEECCCC-CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence 333222 489999999 7888877542 788
Q ss_pred EEeCCCCCCCCceE--------EEeecCCCCeEEEEEeCCCCCEEEEEeCC----CcEEEEE----CCCC
Q 039302 351 IHDLRLLKGGDSVV--------AHFEYHKHPVTSIEWSPHEGSTLAVSSAD----NQLTIWD----LSLE 404 (479)
Q Consensus 351 iwDlr~~~~~~~~~--------~~~~~h~~~I~~v~~sp~~~~~las~s~D----g~I~iwd----l~~~ 404 (479)
+||+.+.. .. ..+.+|...+.+++|+|+ +.++++.... ..|.+|| +..+
T Consensus 228 ~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g 292 (719)
T 1z68_A 228 IIDTTYPA----YVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTW 292 (719)
T ss_dssp EEESSCHH----HHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSE
T ss_pred EEECCCCC----ccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCC
Confidence 99998765 21 123458888999999997 4777764432 2488889 6554
No 160
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.70 E-value=3e-15 Score=143.64 Aligned_cols=195 Identities=14% Similarity=0.140 Sum_probs=140.3
Q ss_pred ceeEEEEecCCCcEEEEEe------------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 171 CVNRIRAMSQNPHICASWA------------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s------------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
.+..++|+|++. .+++++ .++.|.+||+.. .+.+..+.. ...+.+
T Consensus 83 ~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~---------------------~~~~~~~~~-~~~~~~ 139 (337)
T 1pby_B 83 SLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAET---------------------LSRRKAFEA-PRQITM 139 (337)
T ss_dssp CTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTT---------------------TEEEEEEEC-CSSCCC
T ss_pred cccceEECCCCC-EEEEEecccccccccccccCceEEEEECCC---------------------CcEEEEEeC-CCCcce
Confidence 688899999995 444544 579999999976 344444443 346788
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC---------------
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--------------- 303 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--------------- 303 (479)
++|+|++. +|+++ ++.|.+||+.++..... .....+..+ +.|+|++..+++++..++
T Consensus 140 ~~~s~dg~-~l~~~--~~~i~~~d~~~~~~~~~--~~~~~~~~~---~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 211 (337)
T 1pby_B 140 LAWARDGS-KLYGL--GRDLHVMDPEAGTLVED--KPIQSWEAE---TYAQPDVLAVWNQHESSGVMATPFYTARKDIDP 211 (337)
T ss_dssp EEECTTSS-CEEEE--SSSEEEEETTTTEEEEE--ECSTTTTTT---TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCT
T ss_pred eEECCCCC-EEEEe--CCeEEEEECCCCcEeee--eeccccCCC---ceeCCCccEEeeeccCCCceeeeeecccccccc
Confidence 99999998 77777 68999999987543211 011111122 278898874444443333
Q ss_pred --------cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeE
Q 039302 304 --------NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVT 375 (479)
Q Consensus 304 --------~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~ 375 (479)
.|.+||+.+++.....+..+...+.+++|+|++ .+|+++ ++.|.+||+.+.+ .+..+.. ...+.
T Consensus 212 ~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~v~~~d~~~~~----~~~~~~~-~~~~~ 283 (337)
T 1pby_B 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK-TRAFGA--YNVLESFDLEKNA----SIKRVPL-PHSYY 283 (337)
T ss_dssp TSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-SEEEEE--ESEEEEEETTTTE----EEEEEEC-SSCCC
T ss_pred ccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-CEEEEe--CCeEEEEECCCCc----CcceecC-CCcee
Confidence 468999998864334456677788999999999 677776 6999999998876 5666654 35678
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+++|+|++ .+|++++.++.|.+||+...+
T Consensus 284 ~~~~s~dg-~~l~~~~~~~~i~v~d~~~~~ 312 (337)
T 1pby_B 284 SVNVSTDG-STVWLGGALGDLAAYDAETLE 312 (337)
T ss_dssp EEEECTTS-CEEEEESBSSEEEEEETTTCC
T ss_pred eEEECCCC-CEEEEEcCCCcEEEEECcCCc
Confidence 99999965 778888889999999998764
No 161
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=9.9e-16 Score=164.12 Aligned_cols=200 Identities=10% Similarity=0.089 Sum_probs=141.4
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc-----eEEEEeCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE-----GYAIDWNPV 244 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-----v~~l~~s~~ 244 (479)
.....++|+|++ .+++++ +|+|++||+.+ ++....+.+|... ...++|||+
T Consensus 17 ~~~~~~~w~~dg-~~~~~~--~~~i~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~Spd 72 (740)
T 4a5s_A 17 LKLYSLRWISDH-EYLYKQ--ENNILVFNAEY---------------------GNSSVFLENSTFDEFGHSINDYSISPD 72 (740)
T ss_dssp CCCCCEEECSSS-EEEEEE--TTEEEEEETTT---------------------CCEEEEECTTTTTTCCSCCCEEEECTT
T ss_pred ccccccEECCCC-cEEEEc--CCcEEEEECCC---------------------CceEEEEechhhhhhcccccceEECCC
Confidence 456689999999 788875 89999999987 4445556666532 245889999
Q ss_pred CCCeEEEEeCC---------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 245 APGRLVSGDCN---------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 245 ~~~~l~sg~~d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
+. +|+.++.+ +.+.+||+.++.. ..+..|...+...+|||+|+ .||.++ ++.|++||+.++..
T Consensus 73 g~-~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~-----~~l~~~~~~~~~~~~SPdG~-~la~~~-~~~i~~~~~~~~~~ 144 (740)
T 4a5s_A 73 GQ-FILLEYNYVKQWRHSYTASYDIYDLNKRQL-----ITEERIPNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPS 144 (740)
T ss_dssp SS-EEEEEEEEEECSSSCEEEEEEEEETTTTEE-----CCSSCCCTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSCC
T ss_pred CC-EEEEEECCeeeEEEccceEEEEEECCCCcE-----EEcccCCCcceeeEECCCCC-EEEEEE-CCeEEEEECCCCce
Confidence 98 88888875 6677999987643 33566778899999999999 677775 78999999988753
Q ss_pred eeeEEecCCCCE-----------------EEEEEcCCCCcEEEEEeCCC-------------------------------
Q 039302 316 ALMSFKAHNADV-----------------NVISWNRLASCLLASGSDDG------------------------------- 347 (479)
Q Consensus 316 ~~~~~~~h~~~v-----------------~~l~~~p~~~~~l~sgs~dg------------------------------- 347 (479)
...+..++...+ ..+.|+|+| ..||.++.|.
T Consensus 145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA 223 (740)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS
T ss_pred EEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcC
Confidence 222223333222 358999999 7777764321
Q ss_pred -----eEEEEeCCC---CCCCCceEEEee------cCCCCeEEEEEeCCCCCEEEEEeC----CCcEEEEECCCCC
Q 039302 348 -----TFSIHDLRL---LKGGDSVVAHFE------YHKHPVTSIEWSPHEGSTLAVSSA----DNQLTIWDLSLEK 405 (479)
Q Consensus 348 -----~i~iwDlr~---~~~~~~~~~~~~------~h~~~I~~v~~sp~~~~~las~s~----Dg~I~iwdl~~~~ 405 (479)
.|++||+.+ +.. .....+. +|...+..++|+|++ .+++.... +..|.+||+.++.
T Consensus 224 ~~~~~~l~v~d~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 224 VNPTVKFFVVNTDSLSSVTN--ATSIQITAPASMLIGDHYLCDVTWATQE-RISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CCCEEEEEEEETTSCCSSSC--CCEEEECCCHHHHTSCEEEEEEEEEETT-EEEEEEEESSTTEEEEEEEEEETTT
T ss_pred cCCeeEEEEEECCCCCCCCc--ceEEEecCCccCCCCCeEEEEEEEeCCC-eEEEEEeCCCCCEEEEEEEECCCCc
Confidence 578889887 521 0122333 377789999999976 65554432 3479999998763
No 162
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.69 E-value=1.4e-13 Score=132.57 Aligned_cols=244 Identities=13% Similarity=0.093 Sum_probs=172.4
Q ss_pred CcceeEEEEecCCCcEEEEEeCC------------------------ceEEEEeCCCCcccccccccccCCCCCccccCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADT------------------------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQS 224 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~d------------------------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (479)
-+.|..|+++|++ +++++.+.+ ++|.+||..+ ++
T Consensus 23 l~~v~~va~d~~G-~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~---------------------g~ 80 (329)
T 3fvz_A 23 PGQVSGVALDSKN-NLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN---------------------AE 80 (329)
T ss_dssp CSCEEEEEECTTC-CEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT---------------------CC
T ss_pred cCCceEEEECCCC-CEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC---------------------Ce
Confidence 3779999999999 677777777 4688888765 33
Q ss_pred CcEEec-CCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCC-ccccCCC-----CcccCCCcEEEEEECC-CCCcEE
Q 039302 225 PLVKFG-GHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDA-TWNVDPN-----PFIGHAASVEDLQWSP-TESDVF 296 (479)
Q Consensus 225 ~~~~~~-~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~-~~~~~~~-----~~~~h~~~V~~l~~sp-~~~~~l 296 (479)
.+..+. ++-....+|++++++. ++++...++.|++|+..... ....... .-.++......|+++| ++. ++
T Consensus 81 ~~~~~~~~~~~~p~gia~d~~g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-ly 158 (329)
T 3fvz_A 81 ILQSSGKNLFYLPHGLSIDTDGN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VF 158 (329)
T ss_dssp EEEEECTTTCSSEEEEEECTTSC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EE
T ss_pred EEeccCCCccCCceEEEECCCCC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EE
Confidence 333333 3445788999999998 88888889999999985431 1110000 0023455789999999 565 88
Q ss_pred EEEe-CCCcEEEEEcCCCCceeeEEecC----------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE
Q 039302 297 ASCS-VDGNIAIWDTRVGKSALMSFKAH----------NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA 365 (479)
Q Consensus 297 ~s~s-~dg~I~iwD~~~~~~~~~~~~~h----------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~ 365 (479)
++.+ .++.|++||. .+. .+..+... -.....|+++|+++.++++...++.|++||..+++ .+.
T Consensus 159 v~d~~~~~~I~~~~~-~g~-~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~----~~~ 232 (329)
T 3fvz_A 159 VSDGYCNSRIVQFSP-SGK-FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE----FVR 232 (329)
T ss_dssp EEECSSCCEEEEECT-TSC-EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC----EEE
T ss_pred EEeCCCCCeEEEEcC-CCC-EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc----EEE
Confidence 8886 6999999994 343 34444322 23489999999844899999999999999998666 677
Q ss_pred Eee--cCCCCeEEEEEeCCCCCEEEEEeC-------CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-
Q 039302 366 HFE--YHKHPVTSIEWSPHEGSTLAVSSA-------DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH- 435 (479)
Q Consensus 366 ~~~--~h~~~I~~v~~sp~~~~~las~s~-------Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h- 435 (479)
.+. .+...+.+++|+| + ..+++.+. +.+|++|++..+. ++...
T Consensus 233 ~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~-------------------------~~~~~~ 285 (329)
T 3fvz_A 233 EIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGE-------------------------IIDVFK 285 (329)
T ss_dssp EECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCC-------------------------EEEEEC
T ss_pred EEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCe-------------------------EEEEEc
Confidence 663 4667889999999 3 55555443 4489999988763 22221
Q ss_pred ---cCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 436 ---QGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 436 ---~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
.+...+..|+++|++ .++++...++ |.+|++...
T Consensus 286 ~~~~~~~~p~~ia~~~dG-~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 286 PVRKHFDMPHDIVASEDG-TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CSSSCCSSEEEEEECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred CCCCccCCeeEEEECCCC-CEEEEECCCCEEEEEeCCcc
Confidence 122358999999999 5777776666 888887653
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.68 E-value=3.3e-14 Score=138.56 Aligned_cols=218 Identities=11% Similarity=0.103 Sum_probs=137.3
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe--------cCCCCce
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF--------GGHKDEG 236 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~h~~~v 236 (479)
...+......+++ ++..++++...++.|.+|++........ ....... ..+...+
T Consensus 95 ~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~---------------~~~~~~~~g~~~~~~~~~~~~~ 157 (361)
T 3scy_A 95 QKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLP---------------ASDVIEFKGSGPDKERQTMPHL 157 (361)
T ss_dssp EECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCS---------------CSEEEECCCCCSCTTTCSSCCE
T ss_pred eccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcc---------------cceeEEccCCCCCccccCCCcc
Confidence 3345566777777 6656666666789999999975211000 0000001 1123346
Q ss_pred EEEEeCCCCCCeEEEEe-CCCeEEEEecCCCCc------cccC---CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEE
Q 039302 237 YAIDWNPVAPGRLVSGD-CNSCIHLWEPASDAT------WNVD---PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIA 306 (479)
Q Consensus 237 ~~l~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~------~~~~---~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~ 306 (479)
.+++|+|++. +|++++ .++.|.+|++..... .... ......+...+..++|+|+++.+++++..++.|.
T Consensus 158 ~~~~~spdg~-~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~ 236 (361)
T 3scy_A 158 HCVRITPDGK-YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVI 236 (361)
T ss_dssp EEEEECTTSS-EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred eEEEECCCCC-EEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence 8899999997 565544 588999999875432 1000 0111223456789999999984444444799999
Q ss_pred EEEcCCCCc-eeeEE---ecCCCCEEEEEEcCCCCcEEEE-EeC-CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 307 IWDTRVGKS-ALMSF---KAHNADVNVISWNRLASCLLAS-GSD-DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 307 iwD~~~~~~-~~~~~---~~h~~~v~~l~~~p~~~~~l~s-gs~-dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
+||+.++.. .+..+ ..+......++|+|++ .+|++ ... ++.|.+|++.........+..+.. ...+.+++|+
T Consensus 237 v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg-~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~s 314 (361)
T 3scy_A 237 AFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG-KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIIT 314 (361)
T ss_dssp EEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS-SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEEC
T ss_pred EEEecCCceEEeEEEecCCCCCCCcccEEECCCC-CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEEC
Confidence 999986531 12222 2233557899999999 55544 444 589999999632211123444544 5678899999
Q ss_pred CCCCCEEEEEe-CCCcEEEEECCC
Q 039302 381 PHEGSTLAVSS-ADNQLTIWDLSL 403 (479)
Q Consensus 381 p~~~~~las~s-~Dg~I~iwdl~~ 403 (479)
|++ .+|++++ .++.|.+|.+..
T Consensus 315 pdg-~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 315 PNG-KYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp TTS-CEEEEEETTTTEEEEEEECT
T ss_pred CCC-CEEEEEECCCCCEEEEEEEC
Confidence 966 6666666 679999977654
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.68 E-value=5.6e-14 Score=132.20 Aligned_cols=240 Identities=10% Similarity=0.040 Sum_probs=166.5
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec------CCCCceEEEEe
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG------GHKDEGYAIDW 241 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~l~~ 241 (479)
|-..+.++++.+++ .++++.+.++.|.+||.... .+..+. +|...+.++++
T Consensus 28 ~~~~p~~v~~~~~g-~l~v~~~~~~~i~~~d~~g~----------------------~~~~~~~~~~~~~~~~~p~~i~~ 84 (286)
T 1q7f_A 28 QFTEPSGVAVNAQN-DIIVADTNNHRIQIFDKEGR----------------------FKFQFGECGKRDSQLLYPNRVAV 84 (286)
T ss_dssp CBSCEEEEEECTTC-CEEEEEGGGTEEEEECTTSC----------------------EEEEECCBSSSTTCBSSEEEEEE
T ss_pred ccCCCceEEECCCC-CEEEEECCCCEEEEECCCCc----------------------EEEEecccCCCcccccCceEEEE
Confidence 44678899999998 68888788999999997641 122221 34457889999
Q ss_pred -CCCCCCeEEEEeC-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 242 -NPVAPGRLVSGDC-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 242 -s~~~~~~l~sg~~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
.+++. ++++... ++.|.+|+. ++..... ....+...+.+++++|++. ++++...++.|.+||.... .+..
T Consensus 85 ~~~~g~-l~v~~~~~~~~i~~~d~-~g~~~~~---~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~--~~~~ 156 (286)
T 1q7f_A 85 VRNSGD-IIVTERSPTHQIQIYNQ-YGQFVRK---FGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNGN--VLHK 156 (286)
T ss_dssp ETTTTE-EEEEECGGGCEEEEECT-TSCEEEE---ECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTSC--EEEE
T ss_pred EcCCCe-EEEEcCCCCCEEEEECC-CCcEEEE---ecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCCC--EEEE
Confidence 45554 5555433 889999994 3332111 0112345789999999997 8888888899999996532 3444
Q ss_pred Ee--cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC--CCCeEEEEEeCCCCCEEEEEeCCC-
Q 039302 320 FK--AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH--KHPVTSIEWSPHEGSTLAVSSADN- 394 (479)
Q Consensus 320 ~~--~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h--~~~I~~v~~sp~~~~~las~s~Dg- 394 (479)
+. .+...++.|++++++ .++++...++.|++||... . .+..+..+ ...+..|+++|++ .++++...++
T Consensus 157 ~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g-~----~~~~~~~~g~~~~p~~i~~d~~G-~l~v~~~~~~~ 229 (286)
T 1q7f_A 157 FGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEG-Q----YLRQIGGEGITNYPIGVGINSNG-EILIADNHNNF 229 (286)
T ss_dssp EECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTC-C----EEEEESCTTTSCSEEEEEECTTC-CEEEEECSSSC
T ss_pred eCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCC-C----EEEEEccCCccCCCcEEEECCCC-CEEEEeCCCCE
Confidence 43 344578999999998 7888888899999999743 3 45666543 3678999999965 8888888776
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
.|.+|+..... ...+..+.....+.+++++|++. ++++..++.|.+|++..
T Consensus 230 ~i~~~~~~g~~-----------------------~~~~~~~~~~~~~~~i~~~~~g~-l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 230 NLTIFTQDGQL-----------------------ISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp EEEEECTTSCE-----------------------EEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECSC
T ss_pred EEEEECCCCCE-----------------------EEEEcccCCCCcceeEEECCCCc-EEEECCCCeEEEEEccc
Confidence 99999954321 01222233223478999999985 77765543499998754
No 165
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.66 E-value=1.9e-14 Score=141.44 Aligned_cols=246 Identities=10% Similarity=0.031 Sum_probs=154.2
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE--eCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID--WNPV 244 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~s~~ 244 (479)
+|...+..+.|+|++ ..|+.++.++.|++||+.. .+....+..+...+.... ++++
T Consensus 78 ~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~---------------------g~~~~~~~~~~~~~~~~~~~~~~d 135 (388)
T 3pe7_A 78 GRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLAT---------------------LEENVVYQVPAEWVGYGTWVANSD 135 (388)
T ss_dssp SSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTT---------------------CCEEEEEECCTTEEEEEEEEECTT
T ss_pred CCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCC---------------------CcceeeeechhhcccccceeECCC
Confidence 444555578899999 5666778888999999987 344444445555444344 4788
Q ss_pred CCCeEEEE----------------------eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC-CCCcEEEEEeC
Q 039302 245 APGRLVSG----------------------DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP-TESDVFASCSV 301 (479)
Q Consensus 245 ~~~~l~sg----------------------~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~ 301 (479)
+. +|+.. ..+..|.+||+.++.. ..+..+...+..++|+| +++ .|+.++.
T Consensus 136 g~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~-----~~l~~~~~~~~~~~~sp~dg~-~l~~~~~ 208 (388)
T 3pe7_A 136 CT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES-----TVILQENQWLGHPIYRPYDDS-TVAFCHE 208 (388)
T ss_dssp SS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE-----EEEEEESSCEEEEEEETTEEE-EEEEEEC
T ss_pred CC-eeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce-----EEeecCCccccccEECCCCCC-EEEEEEe
Confidence 86 66532 2346899999987643 23445667789999999 888 6766665
Q ss_pred C------CcEEEEEcCCCCceeeEEecCC--CCEEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCCCCCceEEEeec
Q 039302 302 D------GNIAIWDTRVGKSALMSFKAHN--ADVNVISWNRLASCLLASGSDDG----TFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 302 d------g~I~iwD~~~~~~~~~~~~~h~--~~v~~l~~~p~~~~~l~sgs~dg----~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
+ ..|.++|+.... ...+..+. ..+..++|+|++..+++++..++ .|++||+.+++. ..+..+.+
T Consensus 209 ~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~--~~l~~~~~ 284 (388)
T 3pe7_A 209 GPHDLVDARMWLINEDGTN--MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN--RQLTSMPA 284 (388)
T ss_dssp SCTTTSSCSEEEEETTSCC--CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE--EEEEEECC
T ss_pred cCCCCCcceEEEEeCCCCc--eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce--EEEEcCCC
Confidence 3 378888876653 33343343 25778999999944444443332 399999988762 12333332
Q ss_pred CCCC---eEEEEEeCCCCCEEEEE--------eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-
Q 039302 370 HKHP---VTSIEWSPHEGSTLAVS--------SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG- 437 (479)
Q Consensus 370 h~~~---I~~v~~sp~~~~~las~--------s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g- 437 (479)
+... ...+.|+|++..++++. ..+..|++||+..... ..+..+.+
T Consensus 285 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-----------------------~~l~~~~~~ 341 (388)
T 3pe7_A 285 CSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-----------------------HRVARHDTS 341 (388)
T ss_dssp EEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-----------------------EEEEECCCC
T ss_pred ceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-----------------------EEeccccCc
Confidence 1100 11237999764443332 4567899999987531 22333332
Q ss_pred --------CCCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 438 --------QKDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 438 --------~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
...+..++|+|++..+++++..++ .+||.+.
T Consensus 342 ~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 342 WKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 004788999999987777766666 7777653
No 166
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.64 E-value=2e-14 Score=141.20 Aligned_cols=208 Identities=12% Similarity=-0.016 Sum_probs=139.8
Q ss_pred EEEecCCcceeE-----EEEecCCCcEEEEEeCCce--EEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc
Q 039302 163 LRKVAHQGCVNR-----IRAMSQNPHICASWADTGH--VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE 235 (479)
Q Consensus 163 ~~~~~H~~~V~~-----v~~~p~~~~~lat~s~dg~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 235 (479)
.++..|.+.+.. .+|+|++..++.+...+|. |.+||+.. .+......++...
T Consensus 24 ~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~---------------------g~~~~lt~~~~~~ 82 (388)
T 3pe7_A 24 TRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNT---------------------QVATQLTEGRGDN 82 (388)
T ss_dssp EECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTT---------------------CEEEECCCSSCBC
T ss_pred EEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCC---------------------CceEEeeeCCCCC
Confidence 456677766666 8999999655555444774 77778765 3333334455555
Q ss_pred eEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEE--ECCCCCcEEEEE--------------
Q 039302 236 GYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQ--WSPTESDVFASC-------------- 299 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~--~sp~~~~~l~s~-------------- 299 (479)
+.++.|+|++. .|+.++.++.|++||+.++.... .+..+...+.... ++|++. +++..
T Consensus 83 ~~~~~~spdg~-~l~~~~~~~~l~~~d~~~g~~~~----~~~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~ 156 (388)
T 3pe7_A 83 TFGGFLSPDDD-ALFYVKDGRNLMRVDLATLEENV----VYQVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWK 156 (388)
T ss_dssp SSSCEECTTSS-EEEEEETTTEEEEEETTTCCEEE----EEECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHH
T ss_pred ccceEEcCCCC-EEEEEeCCCeEEEEECCCCccee----eeechhhcccccceeECCCCC-eeccccccCcccccccccc
Confidence 66788999998 99999999999999998765422 1223344444444 489888 55532
Q ss_pred --------eCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcC-CCCcEEEEEeCC------CeEEEEeCCCCCCCCceE
Q 039302 300 --------SVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNR-LASCLLASGSDD------GTFSIHDLRLLKGGDSVV 364 (479)
Q Consensus 300 --------s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~sgs~d------g~i~iwDlr~~~~~~~~~ 364 (479)
+.+..|.+||+.+++ ...+..+...+..++|+| ++ ..|+..+.. ..|.++|+.... .
T Consensus 157 ~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~ 228 (388)
T 3pe7_A 157 KFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDD-STVAFCHEGPHDLVDARMWLINEDGTN-----M 228 (388)
T ss_dssp HHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEE-EEEEEEECSCTTTSSCSEEEEETTSCC-----C
T ss_pred hhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCC-CEEEEEEecCCCCCcceEEEEeCCCCc-----e
Confidence 234679999999875 344555667799999999 88 777766653 378888876544 3
Q ss_pred EEeecCC--CCeEEEEEeCCCCCEEEEEeCCC----cEEEEECCCCC
Q 039302 365 AHFEYHK--HPVTSIEWSPHEGSTLAVSSADN----QLTIWDLSLEK 405 (479)
Q Consensus 365 ~~~~~h~--~~I~~v~~sp~~~~~las~s~Dg----~I~iwdl~~~~ 405 (479)
..+..+. ..+..+.|+|++..+++++..++ .|++||+..+.
T Consensus 229 ~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 229 RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE 275 (388)
T ss_dssp EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence 3444444 35888999997744434443322 39999998764
No 167
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.63 E-value=3.2e-13 Score=127.78 Aligned_cols=240 Identities=11% Similarity=0.029 Sum_probs=162.7
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+..+.....+++|+|++..+++++..++.|++|+... . ...+..+...+.++++++
T Consensus 22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~---------------------~--~~~~~~~~~~~~~l~~~~ 78 (296)
T 3e5z_A 22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG---------------------Q--LSPEMHPSHHQNGHCLNK 78 (296)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS---------------------C--EEEEESSCSSEEEEEECT
T ss_pred EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCC---------------------C--eEEEECCCCCcceeeECC
Confidence 34456677889999999965888989999999999876 2 455666777899999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeC-----------------CCcE
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSV-----------------DGNI 305 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~-----------------dg~I 305 (479)
++. ++++...++.|.+||..++..... .....+ ....+++++++|++. ++++.+. .+.|
T Consensus 79 dg~-l~v~~~~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 79 QGH-LIACSHGLRRLERQREPGGEWESI-ADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp TCC-EEEEETTTTEEEEECSTTCCEEEE-ECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred CCc-EEEEecCCCeEEEEcCCCCcEEEE-eeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEE
Confidence 987 777766678999999976543221 011111 123567899999998 7776321 2345
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce---EEEeecCCCCeEEEEEeCC
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV---VAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~---~~~~~~h~~~I~~v~~sp~ 382 (479)
..++.. + .+..+..+....+.++|+|++ .+|++.+.++.|.+||+..... . ...+..+...+..++++++
T Consensus 156 ~~~~~~-g--~~~~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~---~~~~~~~~~~~~~~p~~i~~d~~ 228 (296)
T 3e5z_A 156 FRLAPD-G--TLSAPIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGE---TEYQGVHFTVEPGKTDGLRVDAG 228 (296)
T ss_dssp EEECTT-S--CEEEEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSC---EEEEEEEECCSSSCCCSEEEBTT
T ss_pred EEECCC-C--CEEEeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCc---CcCCCeEeeCCCCCCCeEEECCC
Confidence 555544 2 244455566778999999999 6668888889999999973221 2 2333335566788999996
Q ss_pred CCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEcCCC
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTAADG 461 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~~dg 461 (479)
+ +++++. ++.|.+|+.... .+.....+.. +.+++|. |++..|.++ +.++
T Consensus 229 G-~l~v~~--~~~v~~~~~~g~-------------------------~~~~~~~~~~-~~~~~f~~~d~~~L~v~-t~~~ 278 (296)
T 3e5z_A 229 G-LIWASA--GDGVHVLTPDGD-------------------------ELGRVLTPQT-TSNLCFGGPEGRTLYMT-VSTE 278 (296)
T ss_dssp S-CEEEEE--TTEEEEECTTSC-------------------------EEEEEECSSC-CCEEEEESTTSCEEEEE-ETTE
T ss_pred C-CEEEEc--CCeEEEECCCCC-------------------------EEEEEECCCC-ceeEEEECCCCCEEEEE-cCCe
Confidence 5 666655 889999998622 1222222223 8999994 777645554 4564
Q ss_pred ceEEeee
Q 039302 462 FNILMPS 468 (479)
Q Consensus 462 i~iw~~~ 468 (479)
+|++.
T Consensus 279 --l~~~~ 283 (296)
T 3e5z_A 279 --FWSIE 283 (296)
T ss_dssp --EEEEE
T ss_pred --EEEEE
Confidence 55443
No 168
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.63 E-value=1.1e-13 Score=148.12 Aligned_cols=201 Identities=10% Similarity=0.119 Sum_probs=132.1
Q ss_pred eEEEEecCCCcEEEEEeCC---------ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 173 NRIRAMSQNPHICASWADT---------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~d---------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
+.+.|+|++ ..|+.++.+ +.+.+||+.+. + ...+..|...+...+|||
T Consensus 65 ~~~~~Spdg-~~l~~~~~~~~~~r~~~~~~~~~~d~~~~---------------------~-~~~l~~~~~~~~~~~~SP 121 (740)
T 4a5s_A 65 NDYSISPDG-QFILLEYNYVKQWRHSYTASYDIYDLNKR---------------------Q-LITEERIPNNTQWVTWSP 121 (740)
T ss_dssp CEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEEETTTT---------------------E-ECCSSCCCTTEEEEEECS
T ss_pred cceEECCCC-CEEEEEECCeeeEEEccceEEEEEECCCC---------------------c-EEEcccCCCcceeeEECC
Confidence 458899999 555565654 66789999872 2 223556777899999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcE-----------------EEEEECCCCCcEEEEEeCCC---
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASV-----------------EDLQWSPTESDVFASCSVDG--- 303 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V-----------------~~l~~sp~~~~~l~s~s~dg--- 303 (479)
+|. .||.+. ++.|++|++.++.... ....++...+ ..+.|||+|+ .||.++.|.
T Consensus 122 dG~-~la~~~-~~~i~~~~~~~~~~~~---lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v 195 (740)
T 4a5s_A 122 VGH-KLAYVW-NNDIYVKIEPNLPSYR---ITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEV 195 (740)
T ss_dssp STT-CEEEEE-TTEEEEESSTTSCCEE---CCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTC
T ss_pred CCC-EEEEEE-CCeEEEEECCCCceEE---EcCCCCccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCC
Confidence 998 888885 7899999997755422 1122332222 3589999999 777765322
Q ss_pred ---------------------------------cEEEEEcCC---CCc-eeeEEe------cCCCCEEEEEEcCCCCcEE
Q 039302 304 ---------------------------------NIAIWDTRV---GKS-ALMSFK------AHNADVNVISWNRLASCLL 340 (479)
Q Consensus 304 ---------------------------------~I~iwD~~~---~~~-~~~~~~------~h~~~v~~l~~~p~~~~~l 340 (479)
.|++||+.+ +.. ....+. .|...+..++|+|++ .++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg-~~~ 274 (740)
T 4a5s_A 196 PLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQE-RIS 274 (740)
T ss_dssp CEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETT-EEE
T ss_pred ceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCC-eEE
Confidence 478899887 621 122332 277789999999999 655
Q ss_pred EEEeC----CCeEEEEeCCCCC----CCCceEEEeecCCCCeE-----EEEEeCCCCCEEE-EEe-CCC--cEEEEECCC
Q 039302 341 ASGSD----DGTFSIHDLRLLK----GGDSVVAHFEYHKHPVT-----SIEWSPHEGSTLA-VSS-ADN--QLTIWDLSL 403 (479)
Q Consensus 341 ~sgs~----dg~i~iwDlr~~~----~~~~~~~~~~~h~~~I~-----~v~~sp~~~~~la-s~s-~Dg--~I~iwdl~~ 403 (479)
+.... +..|++||+.++. ........-..|...|. .+.|+|++ ..|+ ..+ .+| .|++||+..
T Consensus 275 ~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG-~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 275 LQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDG-NSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTS-SEEEEEEECTTSCEEEEEEETTC
T ss_pred EEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCC-CEEEEEEEcCCCceEEEEEECCC
Confidence 55432 3479999998765 10001111144666554 78999976 5554 555 344 577788765
Q ss_pred C
Q 039302 404 E 404 (479)
Q Consensus 404 ~ 404 (479)
.
T Consensus 354 ~ 354 (740)
T 4a5s_A 354 K 354 (740)
T ss_dssp S
T ss_pred C
Confidence 4
No 169
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.62 E-value=4.4e-14 Score=138.08 Aligned_cols=206 Identities=12% Similarity=0.011 Sum_probs=135.9
Q ss_pred cceeEEEEecCCCc-EEEEEe-------------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec----C
Q 039302 170 GCVNRIRAMSQNPH-ICASWA-------------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG----G 231 (479)
Q Consensus 170 ~~V~~v~~~p~~~~-~lat~s-------------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 231 (479)
+.+.+++|+|++.. ++++++ .+|.+.+|++... ++....+. .
T Consensus 83 g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~--------------------g~~~~~~~~~~~~ 142 (365)
T 1jof_A 83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSET--------------------GKLEKNVQNYEYQ 142 (365)
T ss_dssp SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTT--------------------CCEEEEEEEEECC
T ss_pred CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCC--------------------CcCcceEeeEEeC
Confidence 34677999999954 455543 6899999999741 22222222 2
Q ss_pred CCCceEEEEeCCCCCCeEEEEeC-CCeEEEEecC-CCCccccCCCCcc--cCCCcEEEEEECCCCCcEEEEEe-CCCcEE
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDC-NSCIHLWEPA-SDATWNVDPNPFI--GHAASVEDLQWSPTESDVFASCS-VDGNIA 306 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~-dg~I~lwd~~-~~~~~~~~~~~~~--~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~ 306 (479)
+...+.+++|+|+++ +|++++. ++.|++|++. ++..... ..+. .|...+..++|+|+++ ++++++ .++.|.
T Consensus 143 ~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~~~--~~~~~~~~g~~p~~~~~spdg~-~l~v~~~~~~~v~ 218 (365)
T 1jof_A 143 ENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVELV--GSVDAPDPGDHPRWVAMHPTGN-YLYALMEAGNRIC 218 (365)
T ss_dssp TTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEEEE--EEEECSSTTCCEEEEEECTTSS-EEEEEETTTTEEE
T ss_pred CCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEEEe--eeEecCCCCCCCCEeEECCCCC-EEEEEECCCCeEE
Confidence 456799999999998 7777653 6799999997 4432111 1121 2456789999999998 555555 578999
Q ss_pred EEEcCC--CCce--eeEEe-------cCCC------CEEEEE-EcCCCCcEEEEEeC-CC-----eEEEEeCCC-CCCCC
Q 039302 307 IWDTRV--GKSA--LMSFK-------AHNA------DVNVIS-WNRLASCLLASGSD-DG-----TFSIHDLRL-LKGGD 361 (479)
Q Consensus 307 iwD~~~--~~~~--~~~~~-------~h~~------~v~~l~-~~p~~~~~l~sgs~-dg-----~i~iwDlr~-~~~~~ 361 (479)
+|++.. ++.. ...+. +|.. .+..++ |+|++ ++|++++. .+ .|.+|++.. +.
T Consensus 219 v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG-~~l~v~~~~~~~~~~~~i~v~~~~~~g~--- 294 (365)
T 1jof_A 219 EYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSG-KYMFASSRANKFELQGYIAGFKLRDCGS--- 294 (365)
T ss_dssp EEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTS-SEEEEEEEESSTTSCCEEEEEEECTTSC---
T ss_pred EEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCC-CEEEEECCCCCCCCCCeEEEEEECCCCC---
Confidence 998763 3311 11121 1122 488999 99999 55555543 23 899999963 33
Q ss_pred ceEE---EeecCCCCeEEEEEeCC--CCCEEEEEeC-CCcEEEEECCCC
Q 039302 362 SVVA---HFEYHKHPVTSIEWSPH--EGSTLAVSSA-DNQLTIWDLSLE 404 (479)
Q Consensus 362 ~~~~---~~~~h~~~I~~v~~sp~--~~~~las~s~-Dg~I~iwdl~~~ 404 (479)
... ....+...+..++|+|. ++.+|++++. ++.|.+|++...
T Consensus 295 -~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 295 -IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp -EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred -EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 322 23345556778999994 3478888876 489999998654
No 170
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.62 E-value=9.3e-14 Score=146.74 Aligned_cols=248 Identities=10% Similarity=-0.016 Sum_probs=162.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEE--eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceE----
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASW--ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGY---- 237 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~--s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---- 237 (479)
.+.+|...|..++++++. .++++. +.++...||.... ......+..|...+.
T Consensus 18 ~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~---------------------~~~~~~l~~~~~~~~~~~~ 75 (662)
T 3azo_A 18 LVASRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRA---------------------DGAEESALPAPWNVRNRVF 75 (662)
T ss_dssp HHHHTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECT---------------------TSCEEESSCTTCCBCCCGG
T ss_pred HHhhcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECC---------------------CCCcceeCCCCcccccccc
Confidence 456799999999999876 566666 5588999999733 122334444544444
Q ss_pred -----EEEeC--CCCCCe-EEEEeC-CCeEEEEecC--C-CCccccCCCCccc-----CCCcEEEEEECCCCCcEEEEEe
Q 039302 238 -----AIDWN--PVAPGR-LVSGDC-NSCIHLWEPA--S-DATWNVDPNPFIG-----HAASVEDLQWSPTESDVFASCS 300 (479)
Q Consensus 238 -----~l~~s--~~~~~~-l~sg~~-dg~I~lwd~~--~-~~~~~~~~~~~~~-----h~~~V~~l~~sp~~~~~l~s~s 300 (479)
...|+ |++. + |+.++. +..|.+|++. . +.. ..+.. |...+.+++|+|+++ .|++++
T Consensus 76 ~~~~~~~~~~~SPDg~-~~la~~~~~~~~l~~~~~~~~g~~~~-----~~l~~~~~~~~~~~~~~~~~spDg~-~l~~~~ 148 (662)
T 3azo_A 76 EYSGFPWAGVPRPAGG-PLLVFTHFGDQRLYAFEPDAPGGAVP-----RPLTPVSAVGGGLRWADPVLLPERG-EVWCMA 148 (662)
T ss_dssp GTCCCCEEEECCSSSS-CEEEEEBTTTCCEEEECTTSTTCCCC-----EECSCCCCSTTCEEEEEEEEETTTT-EEEEEE
T ss_pred ccCCccceeeeecCCC-eEEEEEECCCCeEEEEcCCCCCCCCC-----EeccCCccCCCCccccCcEECCCCC-EEEEEE
Confidence 55565 9998 6 665543 5677777765 2 222 12222 667889999999999 777777
Q ss_pred CC----------CcEEEEEcCC------CCceeeEEe-cCCCCEEEEEEcCCCCcEEEEEeCC--------CeEEEEeCC
Q 039302 301 VD----------GNIAIWDTRV------GKSALMSFK-AHNADVNVISWNRLASCLLASGSDD--------GTFSIHDLR 355 (479)
Q Consensus 301 ~d----------g~I~iwD~~~------~~~~~~~~~-~h~~~v~~l~~~p~~~~~l~sgs~d--------g~i~iwDlr 355 (479)
.+ ..|.+||+.+ +. ...+. .+...+..++|+|++ ..|+.++.+ ..|++||+.
T Consensus 149 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~i~~~d~~ 225 (662)
T 3azo_A 149 EEFTGEGPSDVRRFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTELKTARVT 225 (662)
T ss_dssp EEECSSSTTCEEEEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEEEEEEEEC
T ss_pred ecccCCCCCCceeEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcEEEEEEEC
Confidence 66 5899999987 43 34444 556678889999999 777766644 479999998
Q ss_pred -CCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc--EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE
Q 039302 356 -LLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ--LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL 432 (479)
Q Consensus 356 -~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 432 (479)
++.. .........|...+..+.|+|++ .++++++.++. |.+||+...... ++.
T Consensus 226 ~~g~~-~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~~~----------------------~l~ 281 (662)
T 3azo_A 226 EDGRF-ADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGAAT----------------------QLC 281 (662)
T ss_dssp TTSCE-EEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCCEE----------------------ESS
T ss_pred CCCcc-cccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCcee----------------------ecc
Confidence 4510 01344445567899999999976 58888888884 555554333100 011
Q ss_pred EeecCC------CCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 433 FIHQGQ------KDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 433 ~~h~g~------~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
..+... -.+..++|+|++. +++++..+.++||.+.
T Consensus 282 ~~~~~~~~p~w~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~d 322 (662)
T 3azo_A 282 RREEEFAGPLWTPGMRWFAPLANGL-IAVVHGKGAAVLGILD 322 (662)
T ss_dssp CCSSBSSCCCCSTTCCSEEECTTSC-EEEEEBSSSCEEEEEE
T ss_pred cccccccCccccccCceEeEeCCCE-EEEEEEcCccEEEEEE
Confidence 101000 0256789999885 7777766338888553
No 171
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.60 E-value=4.9e-12 Score=121.50 Aligned_cols=249 Identities=10% Similarity=0.020 Sum_probs=163.7
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+..+...+.+++|+|++ .+++++..++.|++||... .+.......+...+.+++|++
T Consensus 39 ~~~~~~~~~~~~~~~~~g-~l~~~~~~~~~i~~~d~~~---------------------~~~~~~~~~~~~~~~~i~~~~ 96 (333)
T 2dg1_A 39 EISKKGLQLEGLNFDRQG-QLFLLDVFEGNIFKINPET---------------------KEIKRPFVSHKANPAAIKIHK 96 (333)
T ss_dssp EEESSCCCEEEEEECTTS-CEEEEETTTCEEEEECTTT---------------------CCEEEEEECSSSSEEEEEECT
T ss_pred EEeccCccccCcEECCCC-CEEEEECCCCEEEEEeCCC---------------------CcEEEEeeCCCCCcceEEECC
Confidence 455677788999999998 6888888899999999876 232222324566899999999
Q ss_pred CCCCeEEEEeCC----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC------CCcEEEEEcCCC
Q 039302 244 VAPGRLVSGDCN----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV------DGNIAIWDTRVG 313 (479)
Q Consensus 244 ~~~~~l~sg~~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------dg~I~iwD~~~~ 313 (479)
++. +++++..+ +.|.+||..+....... . ...+...+++++++|++. ++++... .+.|..+|..+.
T Consensus 97 dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~-~-~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 97 DGR-LFVCYLGDFKSTGGIFAATENGDNLQDII-E-DLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFR 172 (333)
T ss_dssp TSC-EEEEECTTSSSCCEEEEECTTSCSCEEEE-C-SSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSC
T ss_pred CCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEE-c-cCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCC
Confidence 986 77776655 68999998765432110 1 112345799999999987 6666553 245666665543
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE--------EeecCCCCeEEEEEeCCCCC
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA--------HFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~--------~~~~h~~~I~~v~~sp~~~~ 385 (479)
+ +..+..+...++.++|+|++..++++.+.++.|.+||++.... .+. .+.++ ..+..+++++++ .
T Consensus 173 ~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~---~~~~~~~~~~~~~~~~-~~~~~i~~d~~G-~ 245 (333)
T 2dg1_A 173 T--VTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV---TIQPFGATIPYYFTGH-EGPDSCCIDSDD-N 245 (333)
T ss_dssp C--EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS---SEEEEEEEEEEECCSS-SEEEEEEEBTTC-C
T ss_pred E--EEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc---CcccccceEEEecCCC-CCCCceEECCCC-C
Confidence 3 2233333446889999999844556666788999999974221 121 11222 467889999965 7
Q ss_pred EEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec---CC-CCeeeEEEeCCCCcEEEEEcCC-
Q 039302 386 TLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ---GQ-KDLKELHWHTQVPGMIVSTAAD- 460 (479)
Q Consensus 386 ~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~---g~-~~V~~v~w~p~~~~ll~s~~~d- 460 (479)
++++...++.|.+||..... ...+..+. |+ ..+.+++|+|++..|++++..+
T Consensus 246 l~v~~~~~~~v~~~d~~g~~-----------------------~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~ 302 (333)
T 2dg1_A 246 LYVAMYGQGRVLVFNKRGYP-----------------------IGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIE 302 (333)
T ss_dssp EEEEEETTTEEEEECTTSCE-----------------------EEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGG
T ss_pred EEEEEcCCCEEEEECCCCCE-----------------------EEEEEcCCCccccccCcceEEECCCCCEEEEEeCccC
Confidence 88887788999999974221 01111111 11 1588999999876666666653
Q ss_pred ---CceEEeee
Q 039302 461 ---GFNILMPS 468 (479)
Q Consensus 461 ---gi~iw~~~ 468 (479)
+-.||++.
T Consensus 303 ~~~~~~l~~~~ 313 (333)
T 2dg1_A 303 MGGGSMLYTVN 313 (333)
T ss_dssp GTCCEEEEEEE
T ss_pred CCCCceEEEEe
Confidence 23566654
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.60 E-value=1.1e-13 Score=146.30 Aligned_cols=195 Identities=7% Similarity=-0.053 Sum_probs=132.9
Q ss_pred EEEEe--cCCCc-EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccC-CCcEEecC-----CCCceEEEEeCCC
Q 039302 174 RIRAM--SQNPH-ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQ-SPLVKFGG-----HKDEGYAIDWNPV 244 (479)
Q Consensus 174 ~v~~~--p~~~~-~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----h~~~v~~l~~s~~ 244 (479)
..+|+ |++.. ++++...+..|++|++.. .+ .....+.. |...+.+++|+|+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~--------------------~g~~~~~~l~~~~~~~~~~~~~~~~~spD 140 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDA--------------------PGGAVPRPLTPVSAVGGGLRWADPVLLPE 140 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTS--------------------TTCCCCEECSCCCCSTTCEEEEEEEEETT
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCC--------------------CCCCCCEeccCCccCCCCccccCcEECCC
Confidence 56666 99966 555544466677777651 01 12233444 5667889999999
Q ss_pred CCCeEEEEeCC----------CeEEEEecCC------CCccccCCCCcc-cCCCcEEEEEECCCCCcEEEEEeCC-----
Q 039302 245 APGRLVSGDCN----------SCIHLWEPAS------DATWNVDPNPFI-GHAASVEDLQWSPTESDVFASCSVD----- 302 (479)
Q Consensus 245 ~~~~l~sg~~d----------g~I~lwd~~~------~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~d----- 302 (479)
++ .|++++.+ ..|++|++.+ +.. ..+. .+...+..++|+|+|+ .|+.++.+
T Consensus 141 g~-~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~ 213 (662)
T 3azo_A 141 RG-EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-----RELSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMP 213 (662)
T ss_dssp TT-EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-----EESSCSCSSEECCCEECTTSS-EEEEEEECTTCCT
T ss_pred CC-EEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-----eEEEecCCCcccCceECCCCC-EEEEEECCCCCCC
Confidence 98 88888776 5899999976 322 2233 4556788899999999 77766644
Q ss_pred ---CcEEEEEcC-CCC--ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC--eEEEEeCCCCCCCCceEEEeecCCCC-
Q 039302 303 ---GNIAIWDTR-VGK--SALMSFKAHNADVNVISWNRLASCLLASGSDDG--TFSIHDLRLLKGGDSVVAHFEYHKHP- 373 (479)
Q Consensus 303 ---g~I~iwD~~-~~~--~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg--~i~iwDlr~~~~~~~~~~~~~~h~~~- 373 (479)
..|.+||+. ++. ........|...+..++|+|++ .+++++..++ .|.+||+..+. .......+...
T Consensus 214 ~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg-~l~~~~~~~~~~~l~~~~~~~~~----~~~l~~~~~~~~ 288 (662)
T 3azo_A 214 WEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDG-SLIVATDRTGWWNLHRVDPATGA----ATQLCRREEEFA 288 (662)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTS-CEEEEECTTSSCEEEEECTTTCC----EEESSCCSSBSS
T ss_pred CCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCC-eEEEEECCCCCeEEEEEECCCCc----eeeccccccccc
Confidence 379999998 451 2333334557789999999999 5888888888 66666665544 33322322221
Q ss_pred -------eEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 374 -------VTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 374 -------I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
+.+++|+|++ .++++++. +.++||.+.
T Consensus 289 ~p~w~~~~~~~~~~~~~-~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANG-LIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CCCCSTTCCSEEECTTS-CEEEEEBS-SSCEEEEEE
T ss_pred CccccccCceEeEeCCC-EEEEEEEc-CccEEEEEE
Confidence 5678898854 89999988 999999554
No 173
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=7e-13 Score=141.29 Aligned_cols=249 Identities=6% Similarity=-0.066 Sum_probs=157.0
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
|...+..++|+|+|..++.+.+..| .|++||+.+ ++.+.....+ ..+..++|+|
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t---------------------g~~~~~~~~~-~~~~~~~wsp 180 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG---------------------AKELPDVLER-VKFSCMAWTH 180 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT---------------------TEEEEEEEEE-ECSCCEEECT
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC---------------------CCCCcccccC-cccceEEEEe
Confidence 4456889999999954444444344 899999987 2222211111 1366899999
Q ss_pred CCCCeEEEEeCCCe----------------EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-----C
Q 039302 244 VAPGRLVSGDCNSC----------------IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-----D 302 (479)
Q Consensus 244 ~~~~~l~sg~~dg~----------------I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-----d 302 (479)
++. .|+.++.++. |++|++.++............|...+..+.|+|+++ .|+.++. +
T Consensus 181 Dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~ 258 (710)
T 2xdw_A 181 DGK-GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCDPV 258 (710)
T ss_dssp TSS-EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECSSSSC
T ss_pred CCC-EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCCCc
Confidence 998 7888777765 999999775421111112223455688999999999 5555543 5
Q ss_pred CcEEEEEcCC------CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCC-
Q 039302 303 GNIAIWDTRV------GKSALMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKH- 372 (479)
Q Consensus 303 g~I~iwD~~~------~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~- 372 (479)
..|.+||+.+ +......+..+...+.. .|+|++..+++.+..+ +.|.+||+.+... .....+..|..
T Consensus 259 ~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~ 335 (710)
T 2xdw_A 259 NRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEE--SKWKVLVPEHEK 335 (710)
T ss_dssp CEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSS
T ss_pred cEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCc--ccceeccCCCCC
Confidence 6899999986 43235556666666655 5888884555554433 3699999987641 01344444544
Q ss_pred -CeEEEEEeCCCCCEEEEEeCCCc--EEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCC
Q 039302 373 -PVTSIEWSPHEGSTLAVSSADNQ--LTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQ 449 (479)
Q Consensus 373 -~I~~v~~sp~~~~~las~s~Dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~ 449 (479)
.+.++.|++ ++.++++...|+. |.+|++..+.. ...+..+ ...|..++++|+
T Consensus 336 ~~~~~~~~~~-~~~lv~~~~~~g~~~l~~~~~~~g~~----------------------~~~l~~~--~~~v~~~~~s~d 390 (710)
T 2xdw_A 336 DVLEWVACVR-SNFLVLCYLHDVKNTLQLHDLATGAL----------------------LKIFPLE--VGSVVGYSGQKK 390 (710)
T ss_dssp CEEEEEEEET-TTEEEEEEEETTEEEEEEEETTTCCE----------------------EEEECCC--SSEEEEEECCTT
T ss_pred CeEEEEEEEc-CCEEEEEEEECCEEEEEEEECCCCCE----------------------EEecCCC--CceEEEEecCCC
Confidence 688899996 4478888888885 55566644320 0112222 235888999998
Q ss_pred CCcEEEEEcCCC----ceEEeee
Q 039302 450 VPGMIVSTAADG----FNILMPS 468 (479)
Q Consensus 450 ~~~ll~s~~~dg----i~iw~~~ 468 (479)
+..++++.+... +.+|++.
T Consensus 391 ~~~l~~~~ss~~~P~~i~~~d~~ 413 (710)
T 2xdw_A 391 DTEIFYQFTSFLSPGIIYHCDLT 413 (710)
T ss_dssp CSEEEEEEECSSCCCEEEEEETT
T ss_pred CCEEEEEEeCCCCCCEEEEEECC
Confidence 876666544432 5666653
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.56 E-value=3.3e-13 Score=132.58 Aligned_cols=233 Identities=11% Similarity=0.050 Sum_probs=145.6
Q ss_pred eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE--------------
Q 039302 173 NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA-------------- 238 (479)
Q Consensus 173 ~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------- 238 (479)
..+.|+|++ ..|+..+.++.|++||+... +....+..+......
T Consensus 84 ~~~~~spdg-~~l~~~~~~~~l~~~d~~~~---------------------~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 141 (396)
T 3c5m_A 84 FGGFISTDE-RAFFYVKNELNLMKVDLETL---------------------EEQVIYTVDEEWKGYGTWVANSDCTKLVG 141 (396)
T ss_dssp TTCEECTTS-SEEEEEETTTEEEEEETTTC---------------------CEEEEEECCTTEEEEEEEEECTTSSEEEE
T ss_pred ccceECCCC-CEEEEEEcCCcEEEEECCCC---------------------CcEEEEecccccCCCCCEEEeccCCcccc
Confidence 347899999 56666688889999998762 222222222221111
Q ss_pred -----EEeCCCCCCeEEEE-----eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC-CCCcEEEEEeCC-----
Q 039302 239 -----IDWNPVAPGRLVSG-----DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP-TESDVFASCSVD----- 302 (479)
Q Consensus 239 -----l~~s~~~~~~l~sg-----~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp-~~~~~l~s~s~d----- 302 (479)
++|+|++. .++.+ ..+..|++||+.++... .+..+...+..+.|+| ++. .|+.++.+
T Consensus 142 ~~~~~~~~spdg~-~~~~~~~~~~~~~~~l~~~d~~~g~~~-----~~~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~ 214 (396)
T 3c5m_A 142 IEILKRDWQPLTS-WEKFAEFYHTNPTCRLIKVDIETGELE-----VIHQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLV 214 (396)
T ss_dssp EEEEGGGCCCCCS-HHHHHHHHHTCCCEEEEEEETTTCCEE-----EEEEESSCEEEEEEETTEEE-EEEEEECSCSSSC
T ss_pred ccccccccCCCCc-ceeeeeeccCCCcceEEEEECCCCcEE-----eeccCCcccccceECCCCCC-EEEEEecCCCCCC
Confidence 45788876 55543 45678999999775432 2234567789999999 666 56655543
Q ss_pred -CcEEEEEcCCCCceeeEEecC--CCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCe
Q 039302 303 -GNIAIWDTRVGKSALMSFKAH--NADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPV 374 (479)
Q Consensus 303 -g~I~iwD~~~~~~~~~~~~~h--~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I 374 (479)
..|.+||+.... ...+..+ ...+..++|+|++ ..|+.++.+ +.|++||+.++. ... +.... ..
T Consensus 215 ~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g~----~~~-l~~~~-~~ 285 (396)
T 3c5m_A 215 DARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETLE----NEE-VMVMP-PC 285 (396)
T ss_dssp SCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTS-SCEEEEEEETTTCCEEEEEECTTTCC----EEE-EEECC-SE
T ss_pred CceEEEEECCCCc--eeEeeccCCCccccceEECCCC-CEEEEEecCCCCccceEEEEECCCCC----eEE-eeeCC-CC
Confidence 368888887653 2233223 2357889999999 555544433 449999998765 222 22112 23
Q ss_pred EEEEEeC-CCCCEEEEEe----------------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC
Q 039302 375 TSIEWSP-HEGSTLAVSS----------------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG 437 (479)
Q Consensus 375 ~~v~~sp-~~~~~las~s----------------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g 437 (479)
. +.|+| ++ .+|++++ .+..|++||+..... ..+..+..
T Consensus 286 ~-~~~s~~dg-~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~-----------------------~~l~~~~~ 340 (396)
T 3c5m_A 286 S-HLMSNFDG-SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA-----------------------QKLCKHST 340 (396)
T ss_dssp E-EEEECSSS-SEEEEEECCC----------CCCCCCEEEEEETTTTBC-----------------------CEEEECCC
T ss_pred C-CCccCCCC-ceEEEecCCcceeeccccccccCCCCcEEEEecccCce-----------------------EEccCCCC
Confidence 3 89999 76 6777654 347899999876531 22333321
Q ss_pred C---------CCeeeEEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 438 Q---------KDLKELHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 438 ~---------~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
. ..+..++|+|++..+++++..++ ..||.+.
T Consensus 341 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 341 SWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp CCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 0 02567899999976666665555 6777654
No 175
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.54 E-value=2.2e-12 Score=119.83 Aligned_cols=239 Identities=9% Similarity=-0.036 Sum_probs=162.6
Q ss_pred ceeEEEEecCCCcEEE-EEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 171 CVNRIRAMSQNPHICA-SWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 171 ~V~~v~~~p~~~~~la-t~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
....+++.+++ .+++ +.+.++.|.+|+.... ........+...+.+|++.+++. ++
T Consensus 25 ~p~~i~~~~~g-~l~v~~~~~~~~i~~~~~~~~---------------------~~~~~~~~~~~~p~~i~~~~~g~-l~ 81 (270)
T 1rwi_B 25 SPSGVAVDSAG-NVYVTSEGMYGRVVKLATGST---------------------GTTVLPFNGLYQPQGLAVDGAGT-VY 81 (270)
T ss_dssp CEEEEEECTTC-CEEEEECSSSCEEEEECC--------------------------EECCCCSCCSCCCEEECTTCC-EE
T ss_pred CccceEECCCC-CEEEEccCCCCcEEEecCCCc---------------------ccceEeeCCcCCcceeEECCCCC-EE
Confidence 67889999998 5776 5477889999987551 11111112334678899999876 66
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNV 329 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~ 329 (479)
++.. ++.|.+|+......... .......+.++++++++. ++++...++.|.+|+..+.. ...........++.
T Consensus 82 v~~~-~~~i~~~d~~~~~~~~~----~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~p~~ 154 (270)
T 1rwi_B 82 VTDF-NNRVVTLAAGSNNQTVL----PFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT-QTVLPFTGLNDPDG 154 (270)
T ss_dssp EEET-TTEEEEECTTCSCCEEC----CCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCS-CEECCCCSCCSCCC
T ss_pred EEcC-CCEEEEEeCCCceEeee----ecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCce-eEeeccccCCCcee
Confidence 6555 88999999865432211 112235689999999987 88887778999999766543 21112223346788
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHH
Q 039302 330 ISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEE 409 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~ 409 (479)
+++++++ .++++...++.|.+||..... .......+...+.+|++++++ .++++...++.|.+|+......
T Consensus 155 i~~~~~g-~l~v~~~~~~~i~~~~~~~~~----~~~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~~--- 225 (270)
T 1rwi_B 155 VAVDNSG-NVYVTDTDNNRVVKLEAESNN----QVVLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTTS--- 225 (270)
T ss_dssp EEECTTC-CEEEEEGGGTEEEEECTTTCC----EEECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEECTTCSCC---
T ss_pred EEEeCCC-CEEEEECCCCEEEEEecCCCc----eEeecccCCCCceEEEECCCC-CEEEEECCCCcEEEEcCCCCcc---
Confidence 9999988 788887778999999987654 333223334678999999965 8888888889999999865421
Q ss_pred HHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCC-ceEEeeecc
Q 039302 410 EAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dg-i~iw~~~~~ 470 (479)
......+...+.+++++|++. ++++...++ |.+|++..-
T Consensus 226 ---------------------~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 226 ---------------------TVLPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp ---------------------EECCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGG
T ss_pred ---------------------eeeccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCc
Confidence 111112224689999999985 777776666 888877654
No 176
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.50 E-value=1.3e-12 Score=125.62 Aligned_cols=243 Identities=9% Similarity=0.056 Sum_probs=160.0
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..|+++.|++.+ ..++..+.++.++.|. ......+..+...+.+++|++++. ++
T Consensus 6 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~g~-l~ 59 (333)
T 2dg1_A 6 QDLPTLFYSGKS-NSAVPIISESELQTIT------------------------AEPWLEISKKGLQLEGLNFDRQGQ-LF 59 (333)
T ss_dssp CCCCBCCSCGGG-GCSSCCCCGGGSCEEE------------------------CEEEEEEESSCCCEEEEEECTTSC-EE
T ss_pred cccceeeecCCc-cceeEEeecccCcccc------------------------cceeEEEeccCccccCcEECCCCC-EE
Confidence 457888899987 4455557788888882 233455666667789999999987 77
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC----CcEEEEEcCCCCceeeEEe--cC
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----GNIAIWDTRVGKSALMSFK--AH 323 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----g~I~iwD~~~~~~~~~~~~--~h 323 (479)
+++..++.|.+||..++..... ...+...+.+++|+|++. ++++...+ +.|.+||..+... ...+. .+
T Consensus 60 ~~~~~~~~i~~~d~~~~~~~~~----~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~-~~~~~~~~~ 133 (333)
T 2dg1_A 60 LLDVFEGNIFKINPETKEIKRP----FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNL-QDIIEDLST 133 (333)
T ss_dssp EEETTTCEEEEECTTTCCEEEE----EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSC-EEEECSSSS
T ss_pred EEECCCCEEEEEeCCCCcEEEE----eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEE-EEEEccCcc
Confidence 7888899999999876543211 123457899999999997 77777666 6899999887642 21221 24
Q ss_pred CCCEEEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 324 NADVNVISWNRLASCLLASGSD------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
...++.++++|++ .++++... .+.|..||..... +..+..+...+..++|+|++..++++.+.++.|.
T Consensus 134 ~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~ 207 (333)
T 2dg1_A 134 AYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRT-----VTPIIQNISVANGIALSTDEKVLWVTETTANRLH 207 (333)
T ss_dssp CCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCC-----EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred CCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCE-----EEEeecCCCcccceEECCCCCEEEEEeCCCCeEE
Confidence 4679999999998 77776553 3566667665433 2223233446789999996633556666788999
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC-CCceEEee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA-DGFNILMP 467 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~-dgi~iw~~ 467 (479)
+|++....... ............++..+..+++++++. +.+++.. ++|.+|++
T Consensus 208 ~~d~~~~g~~~----------------~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~ 261 (333)
T 2dg1_A 208 RIALEDDGVTI----------------QPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNK 261 (333)
T ss_dssp EEEECTTSSSE----------------EEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECT
T ss_pred EEEecCCCcCc----------------ccccceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECC
Confidence 99986421100 000001111112223578899999986 5555544 44888875
No 177
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.50 E-value=1e-11 Score=116.51 Aligned_cols=199 Identities=11% Similarity=0.090 Sum_probs=142.6
Q ss_pred CCcceeEEEEe-cCCCcEEEEEeC-CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCC
Q 039302 168 HQGCVNRIRAM-SQNPHICASWAD-TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPV 244 (479)
Q Consensus 168 H~~~V~~v~~~-p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~ 244 (479)
|...+..+++. +++ .++++... ++.|.+|+... +.+..+. .+...+.+++++++
T Consensus 75 ~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~~~d~~g----------------------~~~~~~~~~~~~~~~~i~~~~~ 131 (286)
T 1q7f_A 75 QLLYPNRVAVVRNSG-DIIVTERSPTHQIQIYNQYG----------------------QFVRKFGATILQHPRGVTVDNK 131 (286)
T ss_dssp CBSSEEEEEEETTTT-EEEEEECGGGCEEEEECTTS----------------------CEEEEECTTTCSCEEEEEECTT
T ss_pred cccCceEEEEEcCCC-eEEEEcCCCCCEEEEECCCC----------------------cEEEEecCccCCCceEEEEeCC
Confidence 44678899995 555 67776543 78999999433 3333443 23457899999999
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC-
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH- 323 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h- 323 (479)
+. ++++...++.|.+|+... ..... .....+...+.+|+++|++. ++++.+.++.|++||.... .+..+..+
T Consensus 132 g~-l~v~~~~~~~i~~~~~~g-~~~~~--~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g~--~~~~~~~~g 204 (286)
T 1q7f_A 132 GR-IIVVECKVMRVIIFDQNG-NVLHK--FGCSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEGQ--YLRQIGGEG 204 (286)
T ss_dssp SC-EEEEETTTTEEEEECTTS-CEEEE--EECTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTCC--EEEEESCTT
T ss_pred CC-EEEEECCCCEEEEEcCCC-CEEEE--eCCCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCCC--EEEEEccCC
Confidence 86 788777889999999643 22111 11113445689999999987 8888888999999998543 34444333
Q ss_pred -CCCEEEEEEcCCCCcEEEEEeCCC-eEEEEeCCCCCCCCceEEEeecCCC--CeEEEEEeCCCCCEEEEEeCCCcEEEE
Q 039302 324 -NADVNVISWNRLASCLLASGSDDG-TFSIHDLRLLKGGDSVVAHFEYHKH--PVTSIEWSPHEGSTLAVSSADNQLTIW 399 (479)
Q Consensus 324 -~~~v~~l~~~p~~~~~l~sgs~dg-~i~iwDlr~~~~~~~~~~~~~~h~~--~I~~v~~sp~~~~~las~s~Dg~I~iw 399 (479)
...+..|++++++ .++++...++ .|.+||.. +. .+..+..+.. .+.+++++|++ .++++ +.|++|++|
T Consensus 205 ~~~~p~~i~~d~~G-~l~v~~~~~~~~i~~~~~~-g~----~~~~~~~~~~~~~~~~i~~~~~g-~l~vs-~~~~~v~v~ 276 (286)
T 1q7f_A 205 ITNYPIGVGINSNG-EILIADNHNNFNLTIFTQD-GQ----LISALESKVKHAQCFDVALMDDG-SVVLA-SKDYRLYIY 276 (286)
T ss_dssp TSCSEEEEEECTTC-CEEEEECSSSCEEEEECTT-SC----EEEEEEESSCCSCEEEEEEETTT-EEEEE-ETTTEEEEE
T ss_pred ccCCCcEEEECCCC-CEEEEeCCCCEEEEEECCC-CC----EEEEEcccCCCCcceeEEECCCC-cEEEE-CCCCeEEEE
Confidence 3678999999998 8888888776 99999953 33 5666665443 47899999965 76666 579999999
Q ss_pred ECCCC
Q 039302 400 DLSLE 404 (479)
Q Consensus 400 dl~~~ 404 (479)
++...
T Consensus 277 ~~~~~ 281 (286)
T 1q7f_A 277 RYVQL 281 (286)
T ss_dssp ECSCC
T ss_pred Ecccc
Confidence 98654
No 178
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.49 E-value=1.1e-11 Score=120.84 Aligned_cols=247 Identities=11% Similarity=0.023 Sum_probs=153.3
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC---
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG--- 231 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 231 (479)
.+..+..+ .++++|++..+.++.. .++.|.+||..+ .+.+.++..
T Consensus 46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t---------------------~~~~~~i~~~~~ 102 (361)
T 2oiz_A 46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK---------------------LTFEKEISLPPK 102 (361)
T ss_dssp EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT---------------------CCEEEEEEECTT
T ss_pred EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC---------------------CcEEEEEEcCcc
Confidence 34445444 8999999955555432 367899999876 344444432
Q ss_pred ---CCCceEEEEeCCCCCCeEEEEeC--CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEE
Q 039302 232 ---HKDEGYAIDWNPVAPGRLVSGDC--NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIA 306 (479)
Q Consensus 232 ---h~~~v~~l~~s~~~~~~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~ 306 (479)
+......++++|+++ +|+++.. +++|.+||+.+.+.. ..+..+. ....+.+.|.+...+++.+.||.+.
T Consensus 103 ~~~~g~~p~~i~~spdg~-~l~v~n~~~~~~v~v~d~~~~~~~----~~~i~~~-~~~~v~~~p~~~~~~~~~~~dg~~~ 176 (361)
T 2oiz_A 103 RVQGLNYDGLFRQTTDGK-FIVLQNASPATSIGIVDVAKGDYV----EDVTAAA-GCWSVIPQPNRPRSFMTICGDGGLL 176 (361)
T ss_dssp BCCBCCCGGGEEECTTSS-EEEEEEESSSEEEEEEETTTTEEE----EEEGGGT-TEEEEEECTTSSSEEEEEETTSSEE
T ss_pred ccccCCCcceEEECCCCC-EEEEECCCCCCeEEEEECCCCcEE----EEEecCC-CcceeEEcCCCCeeEEEECCCCcEE
Confidence 224567899999998 8887763 689999999875331 1101111 2233667888766899999999999
Q ss_pred EEEcCCCCceeeE------EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------C---
Q 039302 307 IWDTRVGKSALMS------FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------K--- 371 (479)
Q Consensus 307 iwD~~~~~~~~~~------~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------~--- 371 (479)
+|++......... +..+...+ .+.+.+++ ..++..+.++.|.++|+..... ..+..+... .
T Consensus 177 ~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~ 252 (361)
T 2oiz_A 177 TINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEV--KVDGPWSLLNDEDKAKNWV 252 (361)
T ss_dssp EEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSC--EEEEEEESCCHHHHHTTCE
T ss_pred EEEECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCc--eecccccccCccccccccc
Confidence 9998763322211 11222222 23345666 4566667889999999976542 122222110 0
Q ss_pred -CCeEEEEEeCCCCCEEEEEe----------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCC
Q 039302 372 -HPVTSIEWSPHEGSTLAVSS----------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKD 440 (479)
Q Consensus 372 -~~I~~v~~sp~~~~~las~s----------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~ 440 (479)
.....++|+|++..++++.+ ..+.|.+||+.+.+ .+.....+.
T Consensus 253 p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~-------------------------~v~~i~~~~- 306 (361)
T 2oiz_A 253 PGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ-------------------------RVARIPGRD- 306 (361)
T ss_dssp ECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE-------------------------EEEEEECTT-
T ss_pred cCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc-------------------------EEEEEecCC-
Confidence 11123789997655555444 13489999998773 232223334
Q ss_pred eeeEEEeCCCCcEEEEEcCCCceEEeeecc
Q 039302 441 LKELHWHTQVPGMIVSTAADGFNILMPSNI 470 (479)
Q Consensus 441 V~~v~w~p~~~~ll~s~~~dgi~iw~~~~~ 470 (479)
+.+++|+|++..++ +++.+.|.+|++.+.
T Consensus 307 p~~ia~spdg~~l~-v~n~~~v~v~D~~t~ 335 (361)
T 2oiz_A 307 ALSMTIDQQRNLML-TLDGGNVNVYDISQP 335 (361)
T ss_dssp CCEEEEETTTTEEE-EECSSCEEEEECSSS
T ss_pred eeEEEECCCCCEEE-EeCCCeEEEEECCCC
Confidence 99999999998554 444555999987654
No 179
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.49 E-value=2.1e-13 Score=133.97 Aligned_cols=196 Identities=10% Similarity=0.005 Sum_probs=125.8
Q ss_pred eeEEEEecCCCcEEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc-eEEEEeCCCCCCe
Q 039302 172 VNRIRAMSQNPHICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE-GYAIDWNPVAPGR 248 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~s~~~~~~ 248 (479)
+..++|+|+|..++++...+| .|.+||+.. .+. ..+..+... ...+.|+|++. +
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~---------------------~~~-~~l~~~~~~~~~~~~~spdg~-~ 94 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET---------------------QQA-VQLTEGKGDNTFGGFISTDER-A 94 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT---------------------TEE-EECCCSSCBCTTTCEECTTSS-E
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCC---------------------CcE-EEeecCCCCccccceECCCCC-E
Confidence 788999999966565554444 677788765 222 222223223 33478999998 9
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEE-------------------EEECCCCCcEEEEE-----eCCCc
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVED-------------------LQWSPTESDVFASC-----SVDGN 304 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~-------------------l~~sp~~~~~l~s~-----s~dg~ 304 (479)
|+.++.++.|++|++.++....+ +..+.....+ +.|+|+++ .++.+ ..+..
T Consensus 95 l~~~~~~~~l~~~d~~~~~~~~~----~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 95 FFYVKNELNLMKVDLETLEEQVI----YTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTNPTCR 169 (396)
T ss_dssp EEEEETTTEEEEEETTTCCEEEE----EECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTCCCEE
T ss_pred EEEEEcCCcEEEEECCCCCcEEE----EecccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCCCcce
Confidence 99999899999999977543211 1112222222 35677777 44333 45678
Q ss_pred EEEEEcCCCCceeeEEecCCCCEEEEEEcC-CCCcEEEEEeCC------CeEEEEeCCCCCCCCceEEEeecC--CCCeE
Q 039302 305 IAIWDTRVGKSALMSFKAHNADVNVISWNR-LASCLLASGSDD------GTFSIHDLRLLKGGDSVVAHFEYH--KHPVT 375 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p-~~~~~l~sgs~d------g~i~iwDlr~~~~~~~~~~~~~~h--~~~I~ 375 (479)
|.+||+.+++ ...+..+...+..+.|+| ++ ..|+..+.+ ..|.+||+.... ...+..+ ...+.
T Consensus 170 l~~~d~~~g~--~~~~~~~~~~~~~~~~sp~dg-~~l~~~~~~~~~~~~~~l~~~d~~~~~-----~~~l~~~~~~~~~~ 241 (396)
T 3c5m_A 170 LIKVDIETGE--LEVIHQDTAWLGHPIYRPFDD-STVGFCHEGPHDLVDARMWLVNEDGSN-----VRKIKEHAEGESCT 241 (396)
T ss_dssp EEEEETTTCC--EEEEEEESSCEEEEEEETTEE-EEEEEEECSCSSSCSCCCEEEETTSCC-----CEESSCCCTTEEEE
T ss_pred EEEEECCCCc--EEeeccCCcccccceECCCCC-CEEEEEecCCCCCCCceEEEEECCCCc-----eeEeeccCCCcccc
Confidence 9999998875 233345677899999999 66 656555543 368888986544 2233333 23578
Q ss_pred EEEEeCCCCCEEEEEeCC-----CcEEEEECCCC
Q 039302 376 SIEWSPHEGSTLAVSSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~D-----g~I~iwdl~~~ 404 (479)
.+.|+|++ ..|+.++.+ +.|++||+...
T Consensus 242 ~~~~spdg-~~l~~~~~~~~~~~~~l~~~d~~~g 274 (396)
T 3c5m_A 242 HEFWIPDG-SAMAYVSYFKGQTDRVIYKANPETL 274 (396)
T ss_dssp EEEECTTS-SCEEEEEEETTTCCEEEEEECTTTC
T ss_pred ceEECCCC-CEEEEEecCCCCccceEEEEECCCC
Confidence 89999976 555555433 34999999765
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.48 E-value=3.9e-12 Score=122.84 Aligned_cols=222 Identities=9% Similarity=0.061 Sum_probs=138.9
Q ss_pred cceeEEEEecCCCcEEEEEeCC--ce--EEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADT--GH--VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~d--g~--V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
..+..++|+|+|..++.+.... +. |++|++.. ++...... +.. +..++|+|++
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~---------------------g~~~~l~~-~~~-~~~~~wspdg 115 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLET---------------------LSSKKILE-AKN-IRSLEWNEDS 115 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTT---------------------TEEEEEEE-ESE-EEEEEECTTS
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCC---------------------CceEEEEc-CCC-ccceeECCCC
Confidence 5788999999995454443322 33 67777765 22222222 223 8999999999
Q ss_pred CCeEEEEeCC---------------------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEE
Q 039302 246 PGRLVSGDCN---------------------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFAS 298 (479)
Q Consensus 246 ~~~l~sg~~d---------------------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s 298 (479)
. .|+.++.+ ..|++|++.++.... .+.. . .+..++|+|++ ++++
T Consensus 116 ~-~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~----~l~~-~-~~~~~~~spdg--~~~~ 186 (347)
T 2gop_A 116 R-KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE----EFEK-P-RFSSGIWHRDK--IVVN 186 (347)
T ss_dssp S-EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE----EEEE-E-TTCEEEEETTE--EEEE
T ss_pred C-EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe----eecC-C-CcccccCCCCe--EEEE
Confidence 8 77777632 578999987653301 1222 2 67889999998 6666
Q ss_pred EeCCC-------cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC--------CeEEEEeCCCCCCCCce
Q 039302 299 CSVDG-------NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD--------GTFSIHDLRLLKGGDSV 363 (479)
Q Consensus 299 ~s~dg-------~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d--------g~i~iwDlr~~~~~~~~ 363 (479)
++.++ ...||.+.++ ....+..+ ..+..+ +|++ ..|+.++.+ ..|.+|| ++. .
T Consensus 187 ~~~~~~~~~~~~~~~l~~~d~~--~~~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~----~ 254 (347)
T 2gop_A 187 VPHREIIPQYFKFWDIYIWEDG--KEEKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKE----V 254 (347)
T ss_dssp EECCCSSCCSSCCEEEEEEETT--EEEEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSC----E
T ss_pred EecccccccccccccEEEeCCC--ceEEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCc----e
Confidence 65542 4455555433 23334334 445544 8999 556555533 4688888 333 4
Q ss_pred EEEeecCCCCeEE-EEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCee
Q 039302 364 VAHFEYHKHPVTS-IEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLK 442 (479)
Q Consensus 364 ~~~~~~h~~~I~~-v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~ 442 (479)
......|...+.. +.|+ + + ++++++.++.++|| +..+ +......+...|.
T Consensus 255 ~~l~~~~~~~~~~~~~~s-d-g-~~~~~~~~~~~~l~-~~~g-------------------------~~~~~~~~~~~v~ 305 (347)
T 2gop_A 255 MGILDEVDRGVGQAKIKD-G-K-VYFTLFEEGSVNLY-IWDG-------------------------EIKPIAKGRHWIM 305 (347)
T ss_dssp EESSTTCCSEEEEEEEET-T-E-EEEEEEETTEEEEE-EESS-------------------------SEEEEECSSSEEE
T ss_pred EeccccCCcccCCccEEc-C-c-EEEEEecCCcEEEE-EcCC-------------------------ceEEEecCCCeEE
Confidence 4444556778886 9998 4 4 88899999999999 8732 1122222335699
Q ss_pred eEEEeCCCCcEEEEEcCCC--ceEEee
Q 039302 443 ELHWHTQVPGMIVSTAADG--FNILMP 467 (479)
Q Consensus 443 ~v~w~p~~~~ll~s~~~dg--i~iw~~ 467 (479)
+++|+| . ++++++.++ ..+|..
T Consensus 306 ~~~~s~--~-~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 306 GFDVDE--I-VVYLKETATRLRELFTW 329 (347)
T ss_dssp EEEESS--S-EEEEEECSSSCCEEEEE
T ss_pred eeeeeC--c-EEEEEcCCCChHHheEe
Confidence 999999 3 555555444 377765
No 181
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.48 E-value=7e-12 Score=120.60 Aligned_cols=207 Identities=15% Similarity=0.120 Sum_probs=150.0
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe---------cCCCCceE
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF---------GGHKDEGY 237 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~h~~~v~ 237 (479)
++-...+.|++.|++ .++++.+.++.|++|+.... ...+..+ .++-....
T Consensus 88 ~~~~~p~gia~d~~g-~l~v~d~~~~~v~~~~~~g~--------------------~~~~~~~~~~~~~g~~~~~~~~P~ 146 (329)
T 3fvz_A 88 NLFYLPHGLSIDTDG-NYWVTDVALHQVFKLDPHSK--------------------EGPLLILGRSMQPGSDQNHFCQPT 146 (329)
T ss_dssp TTCSSEEEEEECTTS-CEEEEETTTTEEEEECTTCS--------------------SCCSEEESBTTBCCCSTTCCSSEE
T ss_pred CccCCceEEEECCCC-CEEEEECCCCEEEEEeCCCC--------------------eEEEEEecccCCCCCCccccCCCc
Confidence 344678999999999 58888888999999998652 1133333 23445788
Q ss_pred EEEeCC-CCCCeEEEEe-CCCeEEEEecCCCCccccCCCC------cccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 238 AIDWNP-VAPGRLVSGD-CNSCIHLWEPASDATWNVDPNP------FIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 238 ~l~~s~-~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~------~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
+|+++| ++. ++++.+ .++.|++|+.. +......... ..++-.....|+++|++..++++...++.|++||
T Consensus 147 ~ia~~~~~g~-lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~ 224 (329)
T 3fvz_A 147 DVAVEPSTGA-VFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFK 224 (329)
T ss_dssp EEEECTTTCC-EEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCe-EEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEE
Confidence 999999 565 777765 68999999953 3321110000 0122345899999999554888888999999999
Q ss_pred cCCCCceeeEE--ecCCCCEEEEEEcCCCCcEEEEEe-------CCCeEEEEeCCCCCCCCceEEEe---ecCCCCeEEE
Q 039302 310 TRVGKSALMSF--KAHNADVNVISWNRLASCLLASGS-------DDGTFSIHDLRLLKGGDSVVAHF---EYHKHPVTSI 377 (479)
Q Consensus 310 ~~~~~~~~~~~--~~h~~~v~~l~~~p~~~~~l~sgs-------~dg~i~iwDlr~~~~~~~~~~~~---~~h~~~I~~v 377 (479)
..+++ .+..+ ..+...+..++|+| + .++++.+ .+..|++||+.+++ .+..+ ..+...+..|
T Consensus 225 ~~~G~-~~~~~~~~~~~~~~~~~~~~p-g-~~~~~~g~~~v~~~~~~~v~~~~~~~g~----~~~~~~~~~~~~~~p~~i 297 (329)
T 3fvz_A 225 TDTKE-FVREIKHASFGRNVFAISYIP-G-FLFAVNGKPYFGDQEPVQGFVMNFSSGE----IIDVFKPVRKHFDMPHDI 297 (329)
T ss_dssp TTTCC-EEEEECCTTTTTCEEEEEEET-T-EEEEEECCCCTTCSCCCCEEEEETTTCC----EEEEECCSSSCCSSEEEE
T ss_pred CCCCc-EEEEEeccccCCCcceeeecC-C-EEEEeCCCEEeccCCCcEEEEEEcCCCe----EEEEEcCCCCccCCeeEE
Confidence 98664 45554 34567789999999 4 4444443 34589999999887 67776 3577789999
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+++|++ .++++...+++|++|++...
T Consensus 298 a~~~dG-~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 298 VASEDG-TVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp EECTTS-EEEEEESSSCCEEEEEEEEC
T ss_pred EECCCC-CEEEEECCCCEEEEEeCCcc
Confidence 999966 89999999999999998643
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.47 E-value=3.9e-12 Score=135.21 Aligned_cols=247 Identities=9% Similarity=-0.045 Sum_probs=153.7
Q ss_pred cCCcceeEEEEecCCCcEEEEE----eCCceEEEEeCCCCcccccccccccCCCCCccccCCCc-E-EecCCCCceEEEE
Q 039302 167 AHQGCVNRIRAMSQNPHICASW----ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL-V-KFGGHKDEGYAID 240 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~----s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~h~~~v~~l~ 240 (479)
+|...+..++|+|+|..++.+. +.+.+|++||+.+. +.+ . .+... ....++
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg---------------------~~~~~~~~~~~--~~~~~~ 174 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSG---------------------EWSKVDVIEGG--KYATPK 174 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTC---------------------CBCSSCCBSCC--TTCCCE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCC---------------------CCcCCcccCcc--cccceE
Confidence 4666799999999995444443 33468999999872 221 0 11111 126799
Q ss_pred eCCCCCCeEEEEeCCCe-------------EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC----
Q 039302 241 WNPVAPGRLVSGDCNSC-------------IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG---- 303 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~-------------I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg---- 303 (479)
|+|++. .|+.++.+.. |++|++.++............|...+..+.|+|+|+ .++.++.++
T Consensus 175 wspDg~-~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~ 252 (695)
T 2bkl_A 175 WTPDSK-GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSEN 252 (695)
T ss_dssp ECTTSS-EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEE
T ss_pred EecCCC-EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCce
Confidence 999998 8888887766 999999875431111122334556789999999998 555544444
Q ss_pred cEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe---CCCeEEEEeCCCCCCCCceEEEeec-C-CCCeEEEE
Q 039302 304 NIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGS---DDGTFSIHDLRLLKGGDSVVAHFEY-H-KHPVTSIE 378 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs---~dg~i~iwDlr~~~~~~~~~~~~~~-h-~~~I~~v~ 378 (479)
.|.+||..++ ....+..+...+....| +++. +++++. .++.|.+||+.+... .....+.. + ...|.+++
T Consensus 253 ~l~~~~~~~~--~~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~l~~~~ 326 (695)
T 2bkl_A 253 DVYWKRPGEK--DFRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPAR--ASWKEIVPEDSSASLLSVS 326 (695)
T ss_dssp EEEEECTTCS--SCEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSG--GGCEEEECCCSSCEEEEEE
T ss_pred EEEEEcCCCC--ceEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCc--cCCeEEecCCCCCeEEEEE
Confidence 5666655443 34455556666666667 5664 555544 257899999977541 01233333 3 45688899
Q ss_pred EeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc
Q 039302 379 WSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 379 ~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
|+ ++.++++...|+..+||.+...... ...+..+ +...|..++++|++..++++.+
T Consensus 327 ~~--~~~lv~~~~~dg~~~l~~~~~~g~~---------------------~~~l~~~-~~~~v~~~~~s~d~~~l~~~~s 382 (695)
T 2bkl_A 327 IV--GGHLSLEYLKDATSEVRVATLKGKP---------------------VRTVQLP-GVGAASNLMGLEDLDDAYYVFT 382 (695)
T ss_dssp EE--TTEEEEEEEETTEEEEEEEETTCCE---------------------EEECCCS-SSSEECCCBSCTTCSEEEEEEE
T ss_pred EE--CCEEEEEEEECCEEEEEEEeCCCCe---------------------eEEecCC-CCeEEEEeecCCCCCEEEEEEc
Confidence 98 4488999999999888876532110 0011111 1234777888898876665554
Q ss_pred CCC----ceEEeee
Q 039302 459 ADG----FNILMPS 468 (479)
Q Consensus 459 ~dg----i~iw~~~ 468 (479)
... |.+|++.
T Consensus 383 s~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 383 SFTTPRQIYKTSVS 396 (695)
T ss_dssp ETTEEEEEEEEETT
T ss_pred CCCCCCEEEEEECC
Confidence 432 6666653
No 183
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.46 E-value=7.3e-11 Score=112.05 Aligned_cols=248 Identities=9% Similarity=0.066 Sum_probs=158.0
Q ss_pred ecCCcceeEEEEecCCCcEEEE-------EeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-----CCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICAS-------WADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-----GHK 233 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat-------~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~h~ 233 (479)
...-....+++|.+++ .++++ +..++.|.+||.... +. ..+. ++.
T Consensus 14 ~~~~~~~~~~~~~~~g-~l~~~~~~~~~~~~~~~~i~~~d~~~g---------------------~~-~~~~~~~~~~~~ 70 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNG-DFYIVAPEVEVNGKPAGEILRIDLKTG---------------------KK-TVICKPEVNGYG 70 (314)
T ss_dssp ECCCTTCEEEEECTTS-CEEEEETTCEETTEECCEEEEECTTTC---------------------CE-EEEECCEETTEE
T ss_pred hccCCCccCceECCCC-CEEEEEeccccCCCCCCEEEEEeCCCC---------------------cE-EEEEecccCCCC
Confidence 3444567899999888 67766 567789999997651 11 1121 244
Q ss_pred CceEEEEeCCC-CCCeEEEEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEEEEEECCCCCcEEEEEeCC---------
Q 039302 234 DEGYAIDWNPV-APGRLVSGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVEDLQWSPTESDVFASCSVD--------- 302 (479)
Q Consensus 234 ~~v~~l~~s~~-~~~~l~sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d--------- 302 (479)
..+.+++++++ + .|..++..+.|.+|+.. +..... ...........+.++++++++. ++++...+
T Consensus 71 ~~~~~i~~~~~~g--~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 71 GIPAGCQCDRDAN--QLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTR 146 (314)
T ss_dssp CCEEEEEECSSSS--EEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCB
T ss_pred CCCceEEEecCCC--cEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccc
Confidence 57899999998 5 45555545589999987 433211 0000011224588999999987 66666554
Q ss_pred ------CcEEEEEcCCCCceeeEEecCCCCEEEEEEc----CCCCcEEEEEeCCCeEEEEeCC-CCCCC-CceEEEeecC
Q 039302 303 ------GNIAIWDTRVGKSALMSFKAHNADVNVISWN----RLASCLLASGSDDGTFSIHDLR-LLKGG-DSVVAHFEYH 370 (479)
Q Consensus 303 ------g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~----p~~~~~l~sgs~dg~i~iwDlr-~~~~~-~~~~~~~~~h 370 (479)
+.|..||.. ++ ...+..+....+.++|+ |++..++++...++.|.+||+. .+... ......+..+
T Consensus 147 ~~~~~~~~l~~~~~~-g~--~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~ 223 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQ--MIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGT 223 (314)
T ss_dssp TTSSSCEEEEEECTT-SC--EEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred cccCCCCeEEEECCC-CC--EEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCC
Confidence 567777665 32 22333334557899999 9884455666678999999976 22200 0022333334
Q ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCC
Q 039302 371 K-HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQ 449 (479)
Q Consensus 371 ~-~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~ 449 (479)
. ..+..+++++++ .++++...++.|.+||..+.... ..+ ..+...+.+++|+|+
T Consensus 224 ~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~~~----------------------~~~--~~~~~~~~~i~~~~d 278 (314)
T 1pjx_A 224 HEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQPK----------------------MRI--RCPFEKPSNLHFKPQ 278 (314)
T ss_dssp SSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBSCS----------------------EEE--ECSSSCEEEEEECTT
T ss_pred CCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCcEe----------------------EEE--eCCCCCceeEEECCC
Confidence 3 567899999965 88888878899999998754210 111 122256899999999
Q ss_pred CCcEEEEEcCCC-ceEEeee
Q 039302 450 VPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 450 ~~~ll~s~~~dg-i~iw~~~ 468 (479)
+..+.+++..++ |..|++.
T Consensus 279 g~~l~v~~~~~~~l~~~~~~ 298 (314)
T 1pjx_A 279 TKTIFVTEHENNAVWKFEWQ 298 (314)
T ss_dssp SSEEEEEETTTTEEEEEECS
T ss_pred CCEEEEEeCCCCeEEEEeCC
Confidence 865666666544 7777764
No 184
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.45 E-value=3.2e-10 Score=116.61 Aligned_cols=259 Identities=11% Similarity=0.053 Sum_probs=169.0
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeC----
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWN---- 242 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s---- 242 (479)
.....+..+.++|++. ++.+++.++.|.+||+... ..+.+.++... .....++|+
T Consensus 194 ~~g~~p~~v~~SpDGr-~lyv~~~dg~V~viD~~~~-------------------t~~~v~~i~~G-~~P~~ia~s~~~~ 252 (567)
T 1qks_A 194 DTGYAVHISRLSASGR-YLFVIGRDGKVNMIDLWMK-------------------EPTTVAEIKIG-SEARSIETSKMEG 252 (567)
T ss_dssp ECSSCEEEEEECTTSC-EEEEEETTSEEEEEETTSS-------------------SCCEEEEEECC-SEEEEEEECCSTT
T ss_pred eCCCCccceEECCCCC-EEEEEcCCCeEEEEECCCC-------------------CCcEeEEEecC-CCCceeEEccccC
Confidence 3444677999999995 5556688999999999510 13445555543 346799999
Q ss_pred CCCCCeEEEE-eCCCeEEEEecCCCCccccCC-CC--cc---cCCC-cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 243 PVAPGRLVSG-DCNSCIHLWEPASDATWNVDP-NP--FI---GHAA-SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 243 ~~~~~~l~sg-~~dg~I~lwd~~~~~~~~~~~-~~--~~---~h~~-~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
|+++ +++++ ..+++|.++|..+........ .. .. .|.. .+..+..++.+..++++...+|.|.++|.....
T Consensus 253 pDGk-~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~ 331 (567)
T 1qks_A 253 WEDK-YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLN 331 (567)
T ss_dssp CTTT-EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSS
T ss_pred CCCC-EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCc
Confidence 6988 55554 456899999987754422111 10 11 1222 688899999888667777778999999998764
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-----CCCCeEEEEEeCCCCCEEEE
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-----HKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-----h~~~I~~v~~sp~~~~~las 389 (479)
...............+.|+|++..++++...++.|.++|+.+.+ .+..+.. |.+.-..+ ++|.++.++++
T Consensus 332 ~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k----l~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t 406 (567)
T 1qks_A 332 NLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK----LVAIEDTGGQTPHPGRGANF-VHPTFGPVWAT 406 (567)
T ss_dssp EEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE----EEEEEECSSSSBCCTTCEEE-EETTTEEEEEE
T ss_pred cceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc----EEEEEeccCcCCCCccceee-ECCCCCcEEEe
Confidence 32222223345577889999995556666678999999999876 5555543 43322222 58866566666
Q ss_pred Ee-CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC-CCeeeEEEeCCCCcEEEEEc-------CC
Q 039302 390 SS-ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ-KDLKELHWHTQVPGMIVSTA-------AD 460 (479)
Q Consensus 390 ~s-~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~-~~V~~v~w~p~~~~ll~s~~-------~d 460 (479)
+. .++.|.++|....+.. ....+.+....+. ..-..++.||+++++.++.. .+
T Consensus 407 ~~~g~~~Vsvid~~~~~~~------------------~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~ 468 (567)
T 1qks_A 407 SHMGDDSVALIGTDPEGHP------------------DNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISG 468 (567)
T ss_dssp EBSSSSEEEEEECCTTTCT------------------TTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHT
T ss_pred CCCCCCeEEEecCCCCCCc------------------cccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCc
Confidence 64 4689999999874211 0011222222222 23355788999998888773 23
Q ss_pred CceEEeeecc
Q 039302 461 GFNILMPSNI 470 (479)
Q Consensus 461 gi~iw~~~~~ 470 (479)
.|.||++.++
T Consensus 469 ~v~v~d~~~~ 478 (567)
T 1qks_A 469 SVAVFDIKAM 478 (567)
T ss_dssp CEEEEEGGGC
T ss_pred eEEEEECCcc
Confidence 5999998876
No 185
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.45 E-value=1.5e-10 Score=108.87 Aligned_cols=243 Identities=6% Similarity=-0.012 Sum_probs=164.9
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
.+..+...+.++.+.+++ .+.++...++.|.+||..... ....+..+...+.++++.+
T Consensus 9 ~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~v~~~d~~~~~---------------------~~~~~~~~~~~~~~i~~~~ 66 (299)
T 2z2n_A 9 NLTNQDTGPYGITVSDKG-KVWITQHKANMISCINLDGKI---------------------TEYPLPTPDAKVMCLTISS 66 (299)
T ss_dssp ECCSSSCCEEEEEECTTS-CEEEEETTTTEEEEECTTCCE---------------------EEEECSSTTCCEEEEEECT
T ss_pred cCCCcCCCccceEECCCC-CEEEEecCCCcEEEEcCCCCe---------------------EEecCCcccCceeeEEECC
Confidence 444556789999999998 566665667899999976310 0111122346789999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecC
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h 323 (479)
++. ++++...++.|..|+.. +..... ........+.++++.+++. ++++...++.|.+||. ++..........
T Consensus 67 ~g~-l~v~~~~~~~i~~~~~~-g~~~~~---~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~ 139 (299)
T 2z2n_A 67 DGE-VWFTENAANKIGRITKK-GIIKEY---TLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNK 139 (299)
T ss_dssp TSC-EEEEETTTTEEEEECTT-SCEEEE---ECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSST
T ss_pred CCC-EEEeCCCCCeEEEECCC-CcEEEE---eCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCC
Confidence 886 77776668899999975 222111 1112345789999999887 7777777889999998 443222222334
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEE-EeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVA-HFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~-~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...++.+++.+++ .++++...++.|.+||. ++. ... .+..+...+.++++++++ .++++...++.|.+||.
T Consensus 140 ~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~----~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~- 211 (299)
T 2z2n_A 140 GSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGD----ITEFKIPTPASGPVGITKGNDD-ALWFVEIIGNKIGRITT- 211 (299)
T ss_dssp TCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCC----EEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-
T ss_pred CCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCc----EEEeeCCCCCCcceeEEECCCC-CEEEEccCCceEEEECC-
Confidence 5678999999998 78887777889999998 444 222 233345678899999965 77777777889999998
Q ss_pred CCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEE-cCCCceEEee
Q 039302 403 LEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVST-AADGFNILMP 467 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~-~~dgi~iw~~ 467 (479)
.... ..+....+...+.++++++++. +.++. +.++|.+|++
T Consensus 212 ~g~~-----------------------~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~ 253 (299)
T 2z2n_A 212 SGEI-----------------------TEFKIPTPNARPHAITAGAGID-LWFTEWGANKIGRLTS 253 (299)
T ss_dssp TCCE-----------------------EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEEET
T ss_pred CCcE-----------------------EEEECCCCCCCceeEEECCCCC-EEEeccCCceEEEECC
Confidence 4320 1111112234688999999985 66665 4455888875
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.44 E-value=3.4e-10 Score=106.33 Aligned_cols=241 Identities=6% Similarity=-0.058 Sum_probs=162.1
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
+...+..+++.+++ .+.++...++.|..|+..... ....+......+.++++.+++.
T Consensus 55 ~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~---------------------~~~~~~~~~~~~~~i~~~~~g~- 111 (299)
T 2z2n_A 55 PDAKVMCLTISSDG-EVWFTENAANKIGRITKKGII---------------------KEYTLPNPDSAPYGITEGPNGD- 111 (299)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE---------------------EEEECSSTTCCEEEEEECTTSC-
T ss_pred ccCceeeEEECCCC-CEEEeCCCCCeEEEECCCCcE---------------------EEEeCCCcCCCceeeEECCCCC-
Confidence 45778999999988 577676668889999875310 0111222345788999999886
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
++++...++.|.+|+. ++..... ....+...+.++++.+++. ++++...++.|..||. +++............+
T Consensus 112 l~v~~~~~~~i~~~d~-~g~~~~~---~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 185 (299)
T 2z2n_A 112 IWFTEMNGNRIGRITD-DGKIREY---ELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGP 185 (299)
T ss_dssp EEEEETTTTEEEEECT-TCCEEEE---ECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEEecCCceEEEECC-CCCEEEe---cCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcc
Confidence 7777667889999998 4332211 1122345789999999987 7777777889999998 5532211123345668
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
..+++++++ .++++...++.|.+||. +... .......+...+.++++++++ .++++...++.|.+||.. ...
T Consensus 186 ~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~~-g~~- 257 (299)
T 2z2n_A 186 VGITKGNDD-ALWFVEIIGNKIGRITT-SGEI---TEFKIPTPNARPHAITAGAGI-DLWFTEWGANKIGRLTSN-NII- 257 (299)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEEETT-TEE-
T ss_pred eeEEECCCC-CEEEEccCCceEEEECC-CCcE---EEEECCCCCCCceeEEECCCC-CEEEeccCCceEEEECCC-Cce-
Confidence 899999988 77777777889999998 5441 122233355678999999965 777776678899999983 210
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeeec
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPSN 469 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~~ 469 (479)
..+....+...+.++++ +++. +.+++..+++..+++.+
T Consensus 258 ----------------------~~~~~~~~~~~~~~i~~-~~g~-l~v~~~~~~l~~~~~~~ 295 (299)
T 2z2n_A 258 ----------------------EEYPIQIKSAEPHGICF-DGET-IWFAMECDKIGKLTLIK 295 (299)
T ss_dssp ----------------------EEEECSSSSCCEEEEEE-CSSC-EEEEETTTEEEEEEEC-
T ss_pred ----------------------EEEeCCCCCCccceEEe-cCCC-EEEEecCCcEEEEEcCc
Confidence 11111122246899999 7774 66666666677776643
No 187
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.43 E-value=3.4e-10 Score=107.07 Aligned_cols=242 Identities=10% Similarity=0.008 Sum_probs=158.0
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.+..-.-+..|+|++..++++....+.|+.||... .. ...+. ....+.++++++++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~---------------------~~-~~~~~-~~~~~~~i~~~~dG~ 66 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFT---------------------KQ-VQRVT-MDAPVSSVALRQSGG 66 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTT---------------------CC-EEEEE-CSSCEEEEEEBTTSS
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCC---------------------Cc-EEEEe-CCCceEEEEECCCCC
Confidence 34445668899997768888888899999999876 12 12232 345789999999986
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC---------CCcEEEEEcCCCCcee
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV---------DGNIAIWDTRVGKSAL 317 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~---------dg~I~iwD~~~~~~~~ 317 (479)
+++ +. ++.|.+||..++................+++++++|++. ++++... ...-.||.+.... .+
T Consensus 67 -l~v-~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~ 141 (297)
T 3g4e_A 67 -YVA-TI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-HV 141 (297)
T ss_dssp -EEE-EE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-CE
T ss_pred -EEE-EE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-CE
Confidence 444 44 568999998764332111111111234689999999998 5555432 1334566554332 22
Q ss_pred eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CCCCC-CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 318 MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR--LLKGG-DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 318 ~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr--~~~~~-~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
..+..+....+.++|+|++..++++.+.++.|.+||+. ++... ...+..+..+...+..+++++++ ++.++....+
T Consensus 142 ~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~ 220 (297)
T 3g4e_A 142 KKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGG 220 (297)
T ss_dssp EEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTT
T ss_pred EEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCC
Confidence 23333445578999999995566777888999999974 33200 01223333344567899999965 8888887888
Q ss_pred cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEcCCC
Q 039302 395 QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTAADG 461 (479)
Q Consensus 395 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~~dg 461 (479)
.|.+||..+++ .+.....+...+++++|. |++..|.++++..+
T Consensus 221 ~v~~~d~~tG~------------------------~~~~i~~p~~~~t~~~f~g~d~~~L~vt~~~~~ 264 (297)
T 3g4e_A 221 RVIRLDPVTGK------------------------RLQTVKLPVDKTTSCCFGGKNYSEMYVTCARDG 264 (297)
T ss_dssp EEEEECTTTCC------------------------EEEEEECSSSBEEEEEEESGGGCEEEEEEBCTT
T ss_pred EEEEEcCCCce------------------------EEEEEECCCCCceEEEEeCCCCCEEEEEcCCcC
Confidence 99999987653 122223333469999999 88877888877654
No 188
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.42 E-value=6.6e-11 Score=126.01 Aligned_cols=204 Identities=7% Similarity=-0.056 Sum_probs=136.9
Q ss_pred eeEEEEecCCCcEEEEEeCCce----------------EEEEeCCCCcccccccccccCCCCCccccCCCcEEec--CCC
Q 039302 172 VNRIRAMSQNPHICASWADTGH----------------VQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--GHK 233 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg~----------------V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~ 233 (479)
+..+.|+|++..++ .++.++. |++|++.+.. ......+. .|.
T Consensus 173 ~~~~~wspDg~~l~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~-------------------~~~~~v~~~~~~~ 232 (710)
T 2xdw_A 173 FSCMAWTHDGKGMF-YNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQ-------------------SEDILCAEFPDEP 232 (710)
T ss_dssp SCCEEECTTSSEEE-EEECCCCSSCCSSSCCCCCCCCEEEEEETTSCG-------------------GGCEEEECCTTCT
T ss_pred cceEEEEeCCCEEE-EEEECCccccccccccccCCCCEEEEEECCCCc-------------------ccceEEeccCCCC
Confidence 67899999995454 4455554 9999997621 11122222 345
Q ss_pred CceEEEEeCCCCCCeEEEEeC-----CCeEEEEecCC------CCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDC-----NSCIHLWEPAS------DATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~-----dg~I~lwd~~~------~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
..+..+.|+|++. +|+.++. +..|++||+.+ +... ...+..+...+.. .|+|++..+++.+..+
T Consensus 233 ~~~~~~~~SpDg~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~---~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 233 KWMGGAELSDDGR-YVLLSIREGCDPVNRLWYCDLQQESNGITGILK---WVKLIDNFEGEYD-YVTNEGTVFTFKTNRH 307 (710)
T ss_dssp TCEEEEEECTTSC-EEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCC---CEEEECSSSSCEE-EEEEETTEEEEEECTT
T ss_pred eEEEEEEEcCCCC-EEEEEEEccCCCccEEEEEECcccccccCCccc---eEEeeCCCCcEEE-EEeccCCEEEEEECCC
Confidence 5678999999998 7777654 56899999975 3210 1234445555554 4888888444444333
Q ss_pred ---CcEEEEEcCCCCc-eeeEEecCCC--CEEEEEEcCCCCcEEEEEeCCCe--EEEEeCCCCCCCCceEEEeecCCCCe
Q 039302 303 ---GNIAIWDTRVGKS-ALMSFKAHNA--DVNVISWNRLASCLLASGSDDGT--FSIHDLRLLKGGDSVVAHFEYHKHPV 374 (479)
Q Consensus 303 ---g~I~iwD~~~~~~-~~~~~~~h~~--~v~~l~~~p~~~~~l~sgs~dg~--i~iwDlr~~~~~~~~~~~~~~h~~~I 374 (479)
+.|.+||+.++.. ....+..|.. .+..++|++.+ .++++...++. |.+||+.+++ .+..+..+.+.|
T Consensus 308 ~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~lv~~~~~~g~~~l~~~~~~~g~----~~~~l~~~~~~v 382 (710)
T 2xdw_A 308 SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSN-FLVLCYLHDVKNTLQLHDLATGA----LLKIFPLEVGSV 382 (710)
T ss_dssp CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTT-EEEEEEEETTEEEEEEEETTTCC----EEEEECCCSSEE
T ss_pred CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCC-EEEEEEEECCEEEEEEEECCCCC----EEEecCCCCceE
Confidence 3699999987642 2344545544 68889999766 88899988884 5667776655 567777788889
Q ss_pred EEEEEeCCCCCEEEEEeC---CCcEEEEECCCCC
Q 039302 375 TSIEWSPHEGSTLAVSSA---DNQLTIWDLSLEK 405 (479)
Q Consensus 375 ~~v~~sp~~~~~las~s~---Dg~I~iwdl~~~~ 405 (479)
..+.++|++..++++.+. .++|++||+.++.
T Consensus 383 ~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 383 VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 999999966445544443 5789999997654
No 189
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.40 E-value=1.4e-10 Score=112.99 Aligned_cols=226 Identities=10% Similarity=0.071 Sum_probs=145.4
Q ss_pred cceeEEEEecCCCcEEEEEeC-CceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeCCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWAD-TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~ 247 (479)
.....++++|++..++++... ++.|.+||+.. .+.+.+ +.. . ....+.+.|.+..
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~---------------------~~~~~~~i~~-~-~~~~v~~~p~~~~ 164 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK---------------------GDYVEDVTAA-A-GCWSVIPQPNRPR 164 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTT---------------------TEEEEEEGGG-T-TEEEEEECTTSSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCC---------------------CcEEEEEecC-C-CcceeEEcCCCCe
Confidence 457789999999655555433 68999999987 344444 332 1 2233667787755
Q ss_pred eEEEEeCCCeEEEEecCCCCccc-cC--CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee-eEEec-
Q 039302 248 RLVSGDCNSCIHLWEPASDATWN-VD--PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL-MSFKA- 322 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~-~~--~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~-~~~~~- 322 (479)
.+++.+.||.+.+|++...+... .. ...+.....++ .+.++|++. .++..+.++.|.++|+......+ ..+..
T Consensus 165 ~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~ 242 (361)
T 2oiz_A 165 SFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD-KAHFVSYYGNVYSADFSGDEVKVDGPWSLL 242 (361)
T ss_dssp EEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS-EEEEEBTTSEEEEEECSSSSCEEEEEEESC
T ss_pred eEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC-EEEEEeCCCeEEEEEecCCCceeccccccc
Confidence 88889999999999986533211 00 01122222222 233456666 56666788999999997653211 11110
Q ss_pred -----C----CCCEEEEEEcCCCCcEEEEEe----------CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 323 -----H----NADVNVISWNRLASCLLASGS----------DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 323 -----h----~~~v~~l~~~p~~~~~l~sgs----------~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
+ ......++|+|++..++++.. ..+.|.+||+.+.+ .+.++..+. +.+|+|+|++
T Consensus 243 ~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~----~v~~i~~~~--p~~ia~spdg 316 (361)
T 2oiz_A 243 NDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ----RVARIPGRD--ALSMTIDQQR 316 (361)
T ss_dssp CHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE----EEEEEECTT--CCEEEEETTT
T ss_pred CccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc----EEEEEecCC--eeEEEECCCC
Confidence 0 011123689999855555544 13589999999988 788888877 8999999966
Q ss_pred CCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe-ecCCCCeeeEEEeCCCC
Q 039302 384 GSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI-HQGQKDLKELHWHTQVP 451 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~-h~g~~~V~~v~w~p~~~ 451 (479)
.+|++++. +.|.+||+.+..- +++.. .........++++|++.
T Consensus 317 -~~l~v~n~-~~v~v~D~~t~~l-----------------------~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 317 -NLMLTLDG-GNVNVYDISQPEP-----------------------KLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp -TEEEEECS-SCEEEEECSSSSC-----------------------EEEEEETTSCSSEEEEEECCCSC
T ss_pred -CEEEEeCC-CeEEEEECCCCcc-----------------------eeeEEeccCCCCcEEEEecCCCC
Confidence 78888776 9999999987620 12222 22224678899999874
No 190
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.38 E-value=1.2e-11 Score=120.44 Aligned_cols=181 Identities=10% Similarity=0.055 Sum_probs=130.4
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.++.+++++.. .++++|+.++ +.+|++........... . ..++.... .+.. |+.|+| ++. .|+
T Consensus 39 ~~nlLais~~~-gll~a~~~~~-l~v~~~~~l~~~~~~~~----~------~~~~~~~~-~lp~-V~~l~f--d~~-~L~ 101 (388)
T 1xip_A 39 SLQNLDISNSK-SLFVAASGSK-AVVGELQLLRDHITSDS----T------PLTFKWEK-EIPD-VIFVCF--HGD-QVL 101 (388)
T ss_dssp CCBCEEEETTT-TEEEEEETTE-EEEEEHHHHHHHHHSSS----C------CCCCSEEE-ECTT-EEEEEE--ETT-EEE
T ss_pred cccEEEEcCCC-CEEEEeCCCE-EEEEEhhHhhhhhcccc----c------cccceEEe-eCCC-eeEEEE--CCC-EEE
Confidence 59999999988 6788888875 66699865332111000 0 02333333 3555 999999 665 888
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
++ .++.|++||+.+.... .....|...+.++.+.+. .+++++.||.|.+||+.... .. . +...|.|+
T Consensus 102 v~-~~~~l~v~dv~sl~~~----~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~-~~-~---~~~~Vs~v 168 (388)
T 1xip_A 102 VS-TRNALYSLDLEELSEF----RTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKS-TK-Q---LAQNVTSF 168 (388)
T ss_dssp EE-ESSEEEEEESSSTTCE----EEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCC-EE-E---EEESEEEE
T ss_pred EE-cCCcEEEEEchhhhcc----CccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCc-cc-c---ccCCceEE
Confidence 88 7899999999775431 234456778888887754 38889999999999999775 22 2 34589999
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCce--EEEe------e---cCCCCeEEEEEeCCCCCEEEE
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSV--VAHF------E---YHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~--~~~~------~---~h~~~I~~v~~sp~~~~~las 389 (479)
+|+|.| ++.|..||.+++|+..... . ..++ . +|...|.+|.|.+++ .+|++
T Consensus 169 ~WSpkG---~~vg~~dg~i~~~~~~~~~----~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~-~flv~ 230 (388)
T 1xip_A 169 DVTNSQ---LAVLLKDRSFQSFAWRNGE----MEKQFEFSLPSELEELPVEEYSPLSVTILSPQ-DFLAV 230 (388)
T ss_dssp EECSSE---EEEEETTSCEEEEEEETTE----EEEEEEECCCHHHHTSCTTTSEEEEEEESSSS-EEEEE
T ss_pred EEcCCc---eEEEEcCCcEEEEcCCCcc----ccccceecCCcccccccCCCeeEEEEEEecCC-eEEEE
Confidence 999988 6789999999999887654 2 4445 2 478899999999955 66665
No 191
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.37 E-value=3.2e-11 Score=116.32 Aligned_cols=218 Identities=9% Similarity=0.113 Sum_probs=133.5
Q ss_pred cceeEEEEecCCCcEEEEEe--------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEe
Q 039302 170 GCVNRIRAMSQNPHICASWA--------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDW 241 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s--------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 241 (479)
..+..+++ +|..++.+.. .++.|++||+.. .+. ..+ ..+..++|
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~---------------------~~~-~~l----~~~~~~~~ 66 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKN---------------------NAR-RFI----ENATMPRI 66 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTT---------------------CCE-EEE----ESCEEEEE
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCC---------------------Cce-EEc----ccCCCeEE
Confidence 34555666 6655544421 256789999876 222 233 46789999
Q ss_pred CCCCCCeEEEEeCC---C--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC---------------
Q 039302 242 NPVAPGRLVSGDCN---S--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV--------------- 301 (479)
Q Consensus 242 s~~~~~~l~sg~~d---g--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--------------- 301 (479)
+|++. +|+.++.+ + .|.+|++.++... .+..+.. +..++|+|+++ .|+.++.
T Consensus 67 SpDg~-~la~~~~~~~~~~~~l~~~~~~~g~~~-----~l~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 67 SPDGK-KIAFMRANEEKKVSEIWVADLETLSSK-----KILEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp CTTSS-EEEEEEEETTTTEEEEEEEETTTTEEE-----EEEEESE-EEEEEECTTSS-EEEEEEECCCC---------CC
T ss_pred CCCCC-EEEEEEeccCCCcceEEEEECCCCceE-----EEEcCCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcccc
Confidence 99998 88877643 3 4777787664321 1222334 99999999998 6666553
Q ss_pred ------------CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC-------eEEEEeCCCCCCCCc
Q 039302 302 ------------DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDG-------TFSIHDLRLLKGGDS 362 (479)
Q Consensus 302 ------------dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg-------~i~iwDlr~~~~~~~ 362 (479)
...|.+||+.++. .+..+.. . .+..++|+|++ +++++..++ ...||.+.++
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~-~~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d~~----- 208 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEE-VIEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWEDG----- 208 (347)
T ss_dssp CC---------CEEEEEEEETTTTE-EEEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEETT-----
T ss_pred eeecCcccccCccceEEEEECCCCe-EEeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeCCC-----
Confidence 2579999998875 3233433 3 78899999988 666665542 3444444422
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCC--------CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEe
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD--------NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFI 434 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~D--------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 434 (479)
....+..+ ..+..+ +|++ ..|+.++.+ ..|.+|| ... ....
T Consensus 209 ~~~~l~~~-~~~~~~--spdg-~~l~~~~~~~~~~~~~~~~l~~~d--~~~-------------------------~~~l 257 (347)
T 2gop_A 209 KEEKMFEK-VSFYAV--DSDG-ERILLYGKPEKKYMSEHNKLYIYD--GKE-------------------------VMGI 257 (347)
T ss_dssp EEEEEEEE-ESEEEE--EECS-SCEEEEECCSSSCCCSSCEEEEEC--SSC-------------------------EEES
T ss_pred ceEEeccC-cceeeE--CCCC-CEEEEEEccccCCccccceEEEEC--CCc-------------------------eEec
Confidence 23344444 555554 8966 666665543 3677777 221 1111
Q ss_pred ecC-CCCeee-EEEeCCCCcEEEEEcCCC-ceEEeee
Q 039302 435 HQG-QKDLKE-LHWHTQVPGMIVSTAADG-FNILMPS 468 (479)
Q Consensus 435 h~g-~~~V~~-v~w~p~~~~ll~s~~~dg-i~iw~~~ 468 (479)
..+ ...+.. +.|+ ++ ++++++.++ ++|| +.
T Consensus 258 ~~~~~~~~~~~~~~s-dg--~~~~~~~~~~~~l~-~~ 290 (347)
T 2gop_A 258 LDEVDRGVGQAKIKD-GK--VYFTLFEEGSVNLY-IW 290 (347)
T ss_dssp STTCCSEEEEEEEET-TE--EEEEEEETTEEEEE-EE
T ss_pred cccCCcccCCccEEc-Cc--EEEEEecCCcEEEE-Ec
Confidence 122 235775 8998 65 777777776 8888 65
No 192
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.37 E-value=7.2e-11 Score=126.33 Aligned_cols=247 Identities=11% Similarity=-0.009 Sum_probs=150.5
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
|...+..++|+|+|..++.+.+..| .|++||+.. ++.+.. ..+...+..++|+|
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~t---------------------g~~~~~-~~~~~~~~~~~wsp 218 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVAD---------------------GKPLAD-ELKWVKFSGLAWLG 218 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTT---------------------CCEEEE-EEEEEESCCCEEST
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCC---------------------CCCCCc-cCCCceeccEEEEC
Confidence 4457889999999955554444333 599999987 232221 11112235789999
Q ss_pred CCCCeEEEEeCCCe--------------EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----Cc
Q 039302 244 VAPGRLVSGDCNSC--------------IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GN 304 (479)
Q Consensus 244 ~~~~~l~sg~~dg~--------------I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~ 304 (479)
+ . .|+.++.++. |++|++.++............+...+..+.|+|+|+ .++..+.+ ..
T Consensus 219 D-~-~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~ 295 (741)
T 1yr2_A 219 N-D-ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNT 295 (741)
T ss_dssp T-S-EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCE
T ss_pred C-C-EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcce
Confidence 9 7 7777766553 899998765421111111223334588999999999 55555543 38
Q ss_pred EEEEEcCCCCce-eeEEecCCCCEEEEEEcCCCCcEEEEEeC----CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 305 IAIWDTRVGKSA-LMSFKAHNADVNVISWNRLASCLLASGSD----DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 305 I~iwD~~~~~~~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~----dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
|.+||+.++... ...+..+...+.... .|++ ..|+..+. ++.|.+||+.... ......+..+...+.++.|
T Consensus 296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg-~~l~~~s~~~~~~~~l~~~d~~~~~--~~~~~l~~~~~~~l~~~~~ 371 (741)
T 1yr2_A 296 VHVARVTNGKIGPVTALIPDLKAQWDFV-DGVG-DQLWFVSGDGAPLKKIVRVDLSGST--PRFDTVVPESKDNLESVGI 371 (741)
T ss_dssp EEEEEEETTEECCCEEEECSSSSCEEEE-EEET-TEEEEEECTTCTTCEEEEEECSSSS--CEEEEEECCCSSEEEEEEE
T ss_pred EEEEECCCCCCcccEEecCCCCceEEEE-eccC-CEEEEEECCCCCCCEEEEEeCCCCc--cccEEEecCCCCeEEEEEE
Confidence 999999876222 445555555555543 4777 55555554 3459999987742 1133444555556778888
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec-CCCCeeeEEEeCCCCcEEEEEc
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-GQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
+ ++.++++...|+..+||.+..... .+..... +...|..+.|+|++..++++.+
T Consensus 372 ~--~~~lv~~~~~dg~~~l~~~~~~g~-----------------------~~~~l~~~~~~~v~~~~~s~d~~~l~~~~s 426 (741)
T 1yr2_A 372 A--GNRLFASYIHDAKSQVLAFDLDGK-----------------------PAGAVSLPGIGSASGLSGRPGDRHAYLSFS 426 (741)
T ss_dssp E--BTEEEEEEEETTEEEEEEEETTSC-----------------------EEEECBCSSSCEEEEEECCBTCSCEEEEEE
T ss_pred E--CCEEEEEEEECCEEEEEEEeCCCC-----------------------ceeeccCCCCeEEEEeecCCCCCEEEEEEc
Confidence 7 447888889999888876653211 1111111 1235888999998876766554
Q ss_pred CCC----ceEEeee
Q 039302 459 ADG----FNILMPS 468 (479)
Q Consensus 459 ~dg----i~iw~~~ 468 (479)
... +.+|++.
T Consensus 427 s~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 427 SFTQPATVLALDPA 440 (741)
T ss_dssp ETTEEEEEEEEETT
T ss_pred CCCCCCEEEEEECC
Confidence 432 6667653
No 193
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.35 E-value=2e-10 Score=110.30 Aligned_cols=239 Identities=10% Similarity=0.055 Sum_probs=156.3
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
....+.+. +..+.++...++.|.+||..+ .+.+.++. .......+++++++. .++
T Consensus 45 ~~~~i~~~--~~~lyv~~~~~~~v~viD~~t---------------------~~~~~~i~-~~~~p~~i~~~~~g~-lyv 99 (328)
T 3dsm_A 45 VAQSMVIR--DGIGWIVVNNSHVIFAIDINT---------------------FKEVGRIT-GFTSPRYIHFLSDEK-AYV 99 (328)
T ss_dssp CEEEEEEE--TTEEEEEEGGGTEEEEEETTT---------------------CCEEEEEE-CCSSEEEEEEEETTE-EEE
T ss_pred cceEEEEE--CCEEEEEEcCCCEEEEEECcc---------------------cEEEEEcC-CCCCCcEEEEeCCCe-EEE
Confidence 34566664 336777778889999999987 55556664 345788999988874 555
Q ss_pred EEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 251 SGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
+...++.|.+||+.+...... ......+.......+++ ++..++++.. .++.|.++|+.+.+ .+..+.. .....
T Consensus 100 ~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~-~~~~i~~-g~~p~ 175 (328)
T 3dsm_A 100 TQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDK-VVDELTI-GIQPT 175 (328)
T ss_dssp EEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTE-EEEEEEC-SSCBC
T ss_pred EECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCe-EEEEEEc-CCCcc
Confidence 544789999999987543211 01110111124556777 3443555554 48999999999875 4444443 33457
Q ss_pred EEEEcCCCCcEEEEEeCC----------CeEEEEeCCCCCCCCceEEEeecC-CCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 329 VISWNRLASCLLASGSDD----------GTFSIHDLRLLKGGDSVVAHFEYH-KHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~d----------g~i~iwDlr~~~~~~~~~~~~~~h-~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
.+.++|++ .+++++..+ +.|.++|..+.+ ....+... ......++|+|++ ..|.++.. .|.
T Consensus 176 ~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~----v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~ 247 (328)
T 3dsm_A 176 SLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFT----VEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIW 247 (328)
T ss_dssp CCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTE----EEEEEECCTTCCCEEEEECTTS-CEEEEESS--SEE
T ss_pred ceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCe----EEEEEecCCCCCceeEEEecCC-CEEEEEcc--EEE
Confidence 88999998 676666554 789999998876 55555432 2468999999966 66665544 899
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEE----cCCC-ceEEeee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVST----AADG-FNILMPS 468 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~----~~dg-i~iw~~~ 468 (479)
+||+...... ...+...+...+..++++|.+..+.++. ..++ |.+|++.
T Consensus 248 ~~d~~t~~~~----------------------~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 248 RMPVEADRVP----------------------VRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EEETTCSSCC----------------------SSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEECCCCcee----------------------eeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 9999776310 0001111124688999999666677776 4444 8888764
No 194
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.35 E-value=2.3e-09 Score=102.82 Aligned_cols=234 Identities=10% Similarity=-0.034 Sum_probs=149.0
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
-....+|+|++..++++...++.|.+||.... + ...+. ....+.+++|++++. +++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~---------------------~-~~~~~-~~~~v~~i~~~~dg~-l~v 105 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG---------------------R-KTVHA-LPFMGSALAKISDSK-QLI 105 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT---------------------E-EEEEE-CSSCEEEEEEEETTE-EEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC---------------------c-EEEEE-CCCcceEEEEeCCCe-EEE
Confidence 45678999987688888888899999998761 1 12222 235789999999875 555
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC------CCcEEEEEcCCCCceeeEEecCC
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV------DGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
+ +. ..|.+||..++................+++++++|++. ++++... .+.|..++ +++ +..+..+.
T Consensus 106 ~-~~-~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~--~~~~~~~~ 178 (326)
T 2ghs_A 106 A-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGK--VTKLFADI 178 (326)
T ss_dssp E-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTE--EEEEEEEE
T ss_pred E-EC-CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCc--EEEeeCCC
Confidence 4 44 45999998765432111110011124689999999998 5555432 24455555 332 33333334
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCC--CC-CCCC-ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLR--LL-KGGD-SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr--~~-~~~~-~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
...+.++|+|++..++++.+.++.|.+||+. ++ .... ..+..+......+..+.+.+++ .++++...++.|.+|+
T Consensus 179 ~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d 257 (326)
T 2ghs_A 179 SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYD 257 (326)
T ss_dssp SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEEC
T ss_pred cccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEEC
Confidence 4678999999994455666677899999986 43 2101 1233333344567889999865 7777776778999998
Q ss_pred CCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEe-CCCCcEEEEEcCCC
Q 039302 401 LSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWH-TQVPGMIVSTAADG 461 (479)
Q Consensus 401 l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~-p~~~~ll~s~~~dg 461 (479)
.. .. .+.....+...+++++|. |++..+++++..++
T Consensus 258 ~~-g~------------------------~~~~i~~~~~~~~~~af~g~d~~~L~vt~~~~~ 294 (326)
T 2ghs_A 258 TD-GN------------------------HIARYEVPGKQTTCPAFIGPDASRLLVTSAREH 294 (326)
T ss_dssp TT-CC------------------------EEEEEECSCSBEEEEEEESTTSCEEEEEEBCTT
T ss_pred CC-CC------------------------EEEEEECCCCCcEEEEEecCCCCEEEEEecCCC
Confidence 73 21 111112222369999999 88777777777664
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.34 E-value=1.1e-10 Score=123.86 Aligned_cols=201 Identities=7% Similarity=-0.046 Sum_probs=129.8
Q ss_pred CCCCceEEEEeCCCCCCeEE-----EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCc-
Q 039302 231 GHKDEGYAIDWNPVAPGRLV-----SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGN- 304 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~-----sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~- 304 (479)
+|...+.+++|||++. +|| +|+.+..|++||+.++..... ..+... ....++|+|+++ .|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~~~--~~~~~~wspDg~-~l~~~~~d~~~ 191 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKV--DVIEGG--KYATPKWTPDSK-GFYYEWLPTDP 191 (695)
T ss_dssp SSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSS--CCBSCC--TTCCCEECTTSS-EEEEEECCCCT
T ss_pred CCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCC--cccCcc--cccceEEecCCC-EEEEEEecCCC
Confidence 4555789999999998 777 344456899999988654200 112111 125789999999 7888887776
Q ss_pred ------------EEEEEcCCCCc---eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC----eEEEEeCCCCCCCCceEE
Q 039302 305 ------------IAIWDTRVGKS---ALMSFKAHNADVNVISWNRLASCLLASGSDDG----TFSIHDLRLLKGGDSVVA 365 (479)
Q Consensus 305 ------------I~iwD~~~~~~---~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg----~i~iwDlr~~~~~~~~~~ 365 (479)
|++|++.++.. .+.....+...+..+.|+|++ .+|+.++.++ .|++||..... ..
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l~~~~~~~~~-----~~ 265 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDVYWKRPGEKD-----FR 265 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEEEEECTTCSS-----CE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEEEEEcCCCCc-----eE
Confidence 99999988752 222223455678999999999 5555555444 66666554333 44
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEEe---CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCee
Q 039302 366 HFEYHKHPVTSIEWSPHEGSTLAVSS---ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLK 442 (479)
Q Consensus 366 ~~~~h~~~I~~v~~sp~~~~~las~s---~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~ 442 (479)
.+..+...+....| |++. +++++. .++.|.+||+...... ..+.+..+.....|.
T Consensus 266 ~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~--------------------~~~~l~~~~~~~~l~ 323 (695)
T 2bkl_A 266 LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARA--------------------SWKEIVPEDSSASLL 323 (695)
T ss_dssp EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGG--------------------GCEEEECCCSSCEEE
T ss_pred EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCcc--------------------CCeEEecCCCCCeEE
Confidence 55556667777777 4464 555544 2578999998765210 012333333234588
Q ss_pred eEEEeCCCCcEEEEEcCCC-ceEEee
Q 039302 443 ELHWHTQVPGMIVSTAADG-FNILMP 467 (479)
Q Consensus 443 ~v~w~p~~~~ll~s~~~dg-i~iw~~ 467 (479)
.++|+ . ..++++...++ .+||..
T Consensus 324 ~~~~~-~-~~lv~~~~~dg~~~l~~~ 347 (695)
T 2bkl_A 324 SVSIV-G-GHLSLEYLKDATSEVRVA 347 (695)
T ss_dssp EEEEE-T-TEEEEEEEETTEEEEEEE
T ss_pred EEEEE-C-CEEEEEEEECCEEEEEEE
Confidence 88998 3 36888888887 566644
No 196
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.34 E-value=1.8e-10 Score=106.84 Aligned_cols=200 Identities=4% Similarity=-0.087 Sum_probs=143.2
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec-CCCCceEEEEeCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG-GHKDEGYAIDWNPVAP 246 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~s~~~~ 246 (479)
+...+..+++.+++ .++++.. ++.|.+||.... ....+. .....+.++++.+++.
T Consensus 65 ~~~~p~~i~~~~~g-~l~v~~~-~~~i~~~d~~~~----------------------~~~~~~~~~~~~p~~i~~~~~g~ 120 (270)
T 1rwi_B 65 GLYQPQGLAVDGAG-TVYVTDF-NNRVVTLAAGSN----------------------NQTVLPFDGLNYPEGLAVDTQGA 120 (270)
T ss_dssp SCCSCCCEEECTTC-CEEEEET-TTEEEEECTTCS----------------------CCEECCCCSCSSEEEEEECTTCC
T ss_pred CcCCcceeEECCCC-CEEEEcC-CCEEEEEeCCCc----------------------eEeeeecCCcCCCcceEECCCCC
Confidence 33567889999988 4666655 889999997652 112222 2224688999999886
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
++++...++.|.+|+..+..... . .......+.+|++++++. ++++...++.|.+||..... .......+...
T Consensus 121 -l~v~~~~~~~i~~~~~~~~~~~~---~-~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~ 193 (270)
T 1rwi_B 121 -VYVADRGNNRVVKLAAGSKTQTV---L-PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN-QVVLPFTDITA 193 (270)
T ss_dssp -EEEEEGGGTEEEEECTTCCSCEE---C-CCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCC-EEECCCSSCCS
T ss_pred -EEEEECCCCEEEEEECCCceeEe---e-ccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCc-eEeecccCCCC
Confidence 77777778899999765432211 1 112234578899999987 88887778999999988764 22222233367
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+..|++++++ .++++...++.|.+||..... .......+...+.+++++|++ .++++.+.+++|.++++...
T Consensus 194 p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~----~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 194 PWGIAVDEAG-TVYVTEHNTNQVVKLLAGSTT----STVLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEEEEECTTC-CEEEEETTTSCEEEECTTCSC----CEECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEECCCGG
T ss_pred ceEEEECCCC-CEEEEECCCCcEEEEcCCCCc----ceeeccCCCCCceeEEECCCC-CEEEEECCCCEEEEEcCCCc
Confidence 8999999998 888888888999999987644 222222234578999999965 78889899999999998765
No 197
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.33 E-value=2.4e-11 Score=118.24 Aligned_cols=187 Identities=12% Similarity=-0.041 Sum_probs=129.1
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccc------cCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWN------VDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~------~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
.++.|++++... +|++|+.+ .+.+|++....... ........+.. |+.|+| ++. +|+++ .++.|++|
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~-~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGD-QVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETT-EEEEE-ESSEEEEE
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCC-EEEEE-cCCcEEEE
Confidence 688999999986 99999987 55669875322100 11112334566 999999 676 88888 78999999
Q ss_pred EcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 309 DTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 309 D~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
|+++.. .......|...+.++.+.+. -+++++.||.|.+||+.... ... +...|++++|+|.+ ++
T Consensus 112 dv~sl~-~~~~~~~~~~~v~~i~~~~p---~~av~~~dG~L~v~dl~~~~----~~~----~~~~Vs~v~WSpkG---~~ 176 (388)
T 1xip_A 112 DLEELS-EFRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKS----TKQ----LAQNVTSFDVTNSQ---LA 176 (388)
T ss_dssp ESSSTT-CEEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCC----EEE----EEESEEEEEECSSE---EE
T ss_pred Echhhh-ccCccceeecceeeEEecCC---CEEEEECCCCEEEEEccCCc----ccc----ccCCceEEEEcCCc---eE
Confidence 999875 44456677888998887753 38888999999999999776 332 34689999999965 78
Q ss_pred EEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeec-CCCCeeeEEEeCCCCcEEEEE
Q 039302 389 VSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQ-GQKDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~-g~~~V~~v~w~p~~~~ll~s~ 457 (479)
.|..||.|++|+........ ...-..|+.+ ..+. +...|.+|.|.+++..+++-+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~-------------k~~I~~Pp~~-~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEK-------------QFEFSLPSEL-EELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEE-------------EEEECCCHHH-HTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccc-------------cceecCCccc-ccccCCCeeEEEEEEecCCeEEEEEc
Confidence 89999999999876652100 0000111111 1111 234699999999886555433
No 198
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.33 E-value=2.5e-09 Score=100.40 Aligned_cols=242 Identities=5% Similarity=-0.053 Sum_probs=161.5
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
......+.++.+.+++ .+.++...++.|.+||..... . ...+..+...+.++++.+++
T Consensus 16 ~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~~~~~~~--------------------~-~~~~~~~~~~~~~i~~~~~g 73 (300)
T 2qc5_A 16 SIPDSGPYGITSSEDG-KVWFTQHKANKISSLDQSGRI--------------------K-EFEVPTPDAKVMCLIVSSLG 73 (300)
T ss_dssp SSTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE--------------------E-EEECSSTTCCEEEEEECTTS
T ss_pred CCCCCCcceeeECCCC-CEEEEcCCCCeEEEECCCCce--------------------E-EEECCCCCCcceeEEECCCC
Confidence 3445688999999998 577666678999999976310 0 11122334578899999888
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
. ++++...++.|..||.. +.... .........+.++++.+++. ++++...++.|..+|.. ++.....+.....
T Consensus 74 ~-l~v~~~~~~~v~~~d~~-g~~~~---~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~ 146 (300)
T 2qc5_A 74 D-IWFTENGANKIGKLSKK-GGFTE---YPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGS 146 (300)
T ss_dssp C-EEEEETTTTEEEEECTT-SCEEE---EECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTC
T ss_pred C-EEEEecCCCeEEEECCC-CCeEE---ecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCC
Confidence 6 66666667899999986 33311 11122335789999999887 77777768899999987 4322122233456
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+..+++.+++ .++++...++.|.+||. .... .......+...+..+++++++ .++++....+.|.+|+.. ..
T Consensus 147 ~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~ 219 (300)
T 2qc5_A 147 YPAFITLGSDN-ALWFTENQNNSIGRITN-TGKL---EEYPLPTNAAAPVGITSGNDG-ALWFVEIMGNKIGRITTT-GE 219 (300)
T ss_dssp CEEEEEECTTS-SEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECTT-CC
T ss_pred CceeEEECCCC-CEEEEecCCCeEEEECC-CCcE---EEeeCCCCCCCcceEEECCCC-CEEEEccCCCEEEEEcCC-Cc
Confidence 78999999998 67777777889999998 4331 112222345678999999955 777777777889999983 21
Q ss_pred ChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcC-CCceEEee
Q 039302 406 DEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAA-DGFNILMP 467 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~-dgi~iw~~ 467 (479)
. .......+...+.++++++++. +.++... ++|..|++
T Consensus 220 ~-----------------------~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~ 258 (300)
T 2qc5_A 220 I-----------------------SEYDIPTPNARPHAITAGKNSE-IWFTEWGANQIGRITN 258 (300)
T ss_dssp E-----------------------EEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECT
T ss_pred E-----------------------EEEECCCCCCCceEEEECCCCC-EEEeccCCCeEEEECC
Confidence 0 1111112234688999999985 6666644 44777765
No 199
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.32 E-value=7.4e-10 Score=104.42 Aligned_cols=199 Identities=11% Similarity=0.058 Sum_probs=134.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec---C-CCCceEEE
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG---G-HKDEGYAI 239 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-h~~~v~~l 239 (479)
.+..+...+.++++.|++ .++++...++.|.+||.... +...... + ....+.++
T Consensus 63 ~~~~~~~~~~~l~~~~dg-~l~v~~~~~~~i~~~d~~~g---------------------~~~~~~~~~~~~~~~~~~~i 120 (296)
T 3e5z_A 63 PEMHPSHHQNGHCLNKQG-HLIACSHGLRRLERQREPGG---------------------EWESIADSFEGKKLNSPNDV 120 (296)
T ss_dssp EEESSCSSEEEEEECTTC-CEEEEETTTTEEEEECSTTC---------------------CEEEEECEETTEECCCCCCE
T ss_pred EEECCCCCcceeeECCCC-cEEEEecCCCeEEEEcCCCC---------------------cEEEEeeccCCCCCCCCCCE
Confidence 344567789999999999 67777677789999998551 1111111 1 11246789
Q ss_pred EeCCCCCCeEEE----Ee-------------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC
Q 039302 240 DWNPVAPGRLVS----GD-------------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD 302 (479)
Q Consensus 240 ~~s~~~~~~l~s----g~-------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d 302 (479)
+++|++. ++++ |. ..+.|..++.. +.. ..+..+....+.++|+|+++ .+++.+.+
T Consensus 121 ~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-----~~~~~~~~~~~gi~~s~dg~-~lv~~~~~ 192 (296)
T 3e5z_A 121 CLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-----SAPIRDRVKPNGLAFLPSGN-LLVSDTGD 192 (296)
T ss_dssp EECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-----EEEECCCSSEEEEEECTTSC-EEEEETTT
T ss_pred EECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCE-----EEeecCCCCCccEEECCCCC-EEEEeCCC
Confidence 9999987 7776 32 13456666554 221 12334556789999999999 56777888
Q ss_pred CcEEEEEcC-CCCce---eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEE
Q 039302 303 GNIAIWDTR-VGKSA---LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIE 378 (479)
Q Consensus 303 g~I~iwD~~-~~~~~---~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~ 378 (479)
+.|.+||+. .+. . ...+..+...+..+++++++ +++++. ++.|.+||.. ++ .+..+..+.. +++++
T Consensus 193 ~~i~~~~~~~~g~-~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~--~~~v~~~~~~-g~----~~~~~~~~~~-~~~~~ 262 (296)
T 3e5z_A 193 NATHRYCLNARGE-TEYQGVHFTVEPGKTDGLRVDAGG-LIWASA--GDGVHVLTPD-GD----ELGRVLTPQT-TSNLC 262 (296)
T ss_dssp TEEEEEEECSSSC-EEEEEEEECCSSSCCCSEEEBTTS-CEEEEE--TTEEEEECTT-SC----EEEEEECSSC-CCEEE
T ss_pred CeEEEEEECCCCc-CcCCCeEeeCCCCCCCeEEECCCC-CEEEEc--CCeEEEECCC-CC----EEEEEECCCC-ceeEE
Confidence 999999997 332 2 12223345567789999999 666665 7899999986 44 6777777777 99999
Q ss_pred Ee-CCCCCEEEEEeCCCcEEEEECCCC
Q 039302 379 WS-PHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 379 ~s-p~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|. |++ ..|++++.++ +..+++.+.
T Consensus 263 f~~~d~-~~L~v~t~~~-l~~~~~~~~ 287 (296)
T 3e5z_A 263 FGGPEG-RTLYMTVSTE-FWSIETNVR 287 (296)
T ss_dssp EESTTS-CEEEEEETTE-EEEEECSCC
T ss_pred EECCCC-CEEEEEcCCe-EEEEEcccc
Confidence 95 644 7777777653 444555544
No 200
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.31 E-value=1.9e-09 Score=110.85 Aligned_cols=191 Identities=10% Similarity=0.021 Sum_probs=139.9
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
.++++...+++|.++|..+ .+.+.++.. ...+..+.|+|++. +|++++.++.|.+||
T Consensus 168 ~~~V~~~~~~~V~viD~~t---------------------~~v~~~i~~-g~~p~~v~~SpDGr-~lyv~~~dg~V~viD 224 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGST---------------------YEIKTVLDT-GYAVHISRLSASGR-YLFVIGRDGKVNMID 224 (567)
T ss_dssp EEEEEETTTTEEEEEETTT---------------------CCEEEEEEC-SSCEEEEEECTTSC-EEEEEETTSEEEEEE
T ss_pred eEEEEeCCCCeEEEEECCC---------------------CeEEEEEeC-CCCccceEECCCCC-EEEEEcCCCeEEEEE
Confidence 6778888899999999987 556666653 33567999999998 899999999999999
Q ss_pred cC--CCCccccCCCCcccCCCcEEEEEEC----CCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec----------C-CC
Q 039302 263 PA--SDATWNVDPNPFIGHAASVEDLQWS----PTESDVFASCSVDGNIAIWDTRVGKSALMSFKA----------H-NA 325 (479)
Q Consensus 263 ~~--~~~~~~~~~~~~~~h~~~V~~l~~s----p~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~----------h-~~ 325 (479)
+. +.... ..+.. ......++|+ |+++.++++...+++|.|+|..+.+ ++..+.. | ..
T Consensus 225 ~~~~t~~~v----~~i~~-G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~-~~~~i~~~~~~~~~~~~~p~~ 298 (567)
T 1qks_A 225 LWMKEPTTV----AEIKI-GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE-PKKIQSTRGMTYDEQEYHPEP 298 (567)
T ss_dssp TTSSSCCEE----EEEEC-CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC-EEEEEECCEECTTTCCEESCC
T ss_pred CCCCCCcEe----EEEec-CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc-EEEEEeccccccccccccCCC
Confidence 95 43221 12222 2346789999 6999666667778999999998875 4444432 1 12
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+..+..+++++.++++....|.|.++|...... ..+..+ ........+.|+|++..+++++..++.|.++|+.+.+
T Consensus 299 rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~--~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~k 375 (567)
T 1qks_A 299 RVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--LKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGK 375 (567)
T ss_dssp CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE--EEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTE
T ss_pred ceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc--ceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 6788999998877888888889999999987652 122233 2345677899999774445555578999999998763
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.30 E-value=9.9e-10 Score=102.68 Aligned_cols=182 Identities=9% Similarity=0.078 Sum_probs=136.1
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEEeCCCCCCeEEEEeCCCeEEEE
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAIDWNPVAPGRLVSGDCNSCIHLW 261 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~s~~~~~~l~sg~~dg~I~lw 261 (479)
++|++++.++.|.+||..+ ++.+.++..+. ..+.++.+.|++. +|+ +.++.|..|
T Consensus 6 ~~lv~~~~~~~v~~~d~~t---------------------G~~~w~~~~~~~~~~~~~~~~pdG~-ilv--s~~~~V~~~ 61 (276)
T 3no2_A 6 HLLVGGSGWNKIAIINKDT---------------------KEIVWEYPLEKGWECNSVAATKAGE-ILF--SYSKGAKMI 61 (276)
T ss_dssp EEEEECTTCSEEEEEETTT---------------------TEEEEEEECCTTCCCCEEEECTTSC-EEE--ECBSEEEEE
T ss_pred cEEEeeCCCCEEEEEECCC---------------------CeEEEEeCCCccCCCcCeEECCCCC-EEE--eCCCCEEEE
Confidence 6888999999999999876 66777887766 4789999999987 777 347789999
Q ss_pred ecCCCCc-cccCCCCcccC-CCcEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCceeeEEe------cCCCCEEEEEE
Q 039302 262 EPASDAT-WNVDPNPFIGH-AASVEDLQWSPTESDVFASCSV-DGNIAIWDTRVGKSALMSFK------AHNADVNVISW 332 (479)
Q Consensus 262 d~~~~~~-~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s~-dg~I~iwD~~~~~~~~~~~~------~h~~~v~~l~~ 332 (479)
|. +++. |. +..+ ...+.++++.+++. ++++.+. ++.|..+|. +++ .+..+. .+......+++
T Consensus 62 d~-~G~~~W~-----~~~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk-~l~~~~~~~~~~~~~~~~~~v~~ 132 (276)
T 3no2_A 62 TR-DGRELWN-----IAAPAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KGE-VLSKTEFETGIERPHAQFRQINK 132 (276)
T ss_dssp CT-TSCEEEE-----EECCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TSC-EEEEEEECCSCSSGGGSCSCCEE
T ss_pred CC-CCCEEEE-----EcCCCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CCC-EEEEEeccCCCCcccccccCceE
Confidence 98 5443 22 2222 34688999999998 7777776 777777775 443 333332 11123445678
Q ss_pred cCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 333 NRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 333 ~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+++ .+|++...++.|..||.. ++ .+..+..+ ..+.++...+++ .++++++.+++|..+|..+++
T Consensus 133 ~~~G-~~lv~~~~~~~v~~~d~~-G~----~~w~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~ 197 (276)
T 3no2_A 133 NKKG-NYLVPLFATSEVREIAPN-GQ----LLNSVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNR 197 (276)
T ss_dssp CTTS-CEEEEETTTTEEEEECTT-SC----EEEEEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCC
T ss_pred CCCC-CEEEEecCCCEEEEECCC-CC----EEEEEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCc
Confidence 8888 899999999999999987 76 67777764 455677788854 888888888899999988663
No 202
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.29 E-value=5.2e-09 Score=98.16 Aligned_cols=239 Identities=7% Similarity=-0.052 Sum_probs=159.2
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
+...+..+.+.+++ .+.++...++.|..||..... ....+......+.++++.+++.
T Consensus 60 ~~~~~~~i~~~~~g-~l~v~~~~~~~v~~~d~~g~~---------------------~~~~~~~~~~~~~~i~~~~~g~- 116 (300)
T 2qc5_A 60 PDAKVMCLIVSSLG-DIWFTENGANKIGKLSKKGGF---------------------TEYPLPQPDSGPYGITEGLNGD- 116 (300)
T ss_dssp TTCCEEEEEECTTS-CEEEEETTTTEEEEECTTSCE---------------------EEEECSSTTCCEEEEEECSTTC-
T ss_pred CCCcceeEEECCCC-CEEEEecCCCeEEEECCCCCe---------------------EEecCCCCCCCCccceECCCCC-
Confidence 44678999999988 566666667889999876311 1112222335688999998886
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
++++...++.|..++.. +..... .+......+.++++.+++. ++++...++.|..+|. ++.........+...+
T Consensus 117 l~v~~~~~~~i~~~~~~-g~~~~~---~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 190 (300)
T 2qc5_A 117 IWFTQLNGDRIGKLTAD-GTIYEY---DLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAP 190 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEE---ECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred EEEEccCCCeEEEECCC-CCEEEc---cCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCc
Confidence 67766668899999986 333211 1222345789999999988 7777777889999998 4432221222344578
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCCh
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDE 407 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~ 407 (479)
..+++.+++ .++++....+.|.+||. .+.. ....+..+...+.++++++++ .++++...++.|..|+.. ...
T Consensus 191 ~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~~-g~~- 262 (300)
T 2qc5_A 191 VGITSGNDG-ALWFVEIMGNKIGRITT-TGEI---SEYDIPTPNARPHAITAGKNS-EIWFTEWGANQIGRITND-NTI- 262 (300)
T ss_dssp EEEEECTTS-SEEEEETTTTEEEEECT-TCCE---EEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCE-
T ss_pred ceEEECCCC-CEEEEccCCCEEEEEcC-CCcE---EEEECCCCCCCceEEEECCCC-CEEEeccCCCeEEEECCC-CcE-
Confidence 999999988 77777777788999998 3331 122233345678999999965 777777677899999983 210
Q ss_pred HHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 408 EEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
..+....+...+.++++.+++. +.+++.. +|..+++
T Consensus 263 ----------------------~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~-~i~~~~p 298 (300)
T 2qc5_A 263 ----------------------QEYQLQTENAEPHGITFGKDGS-VWFALKC-KIGKLNL 298 (300)
T ss_dssp ----------------------EEEECCSTTCCCCCEEECTTSC-EEEECSS-EEEEEEE
T ss_pred ----------------------EEEECCccCCccceeEeCCCCC-EEEEccC-ceEEeCC
Confidence 1111112234689999999985 6665553 6666654
No 203
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.27 E-value=3.9e-09 Score=104.51 Aligned_cols=201 Identities=11% Similarity=0.028 Sum_probs=135.1
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
.....|++.+++ .++++...++.|++||... ......... ..... ++|++++. .|
T Consensus 131 ~~P~~la~d~~g-~lyv~d~~~~~I~~id~~~---------------------g~~~~~~~~-~~~~~-ia~~~~g~-~l 185 (409)
T 3hrp_A 131 KYMWGIAAVGNN-TVLAYQRDDPRVRLISVDD---------------------NKVTTVHPG-FKGGK-PAVTKDKQ-RV 185 (409)
T ss_dssp CCEEEEEECSTT-EEEEEETTTTEEEEEETTT---------------------TEEEEEEET-CCBCB-CEECTTSS-EE
T ss_pred CCceEEEEeCCC-CEEEEecCCCcEEEEECCC---------------------CEEEEeecc-CCCCc-eeEecCCC-cE
Confidence 467889999988 6888878889999999875 222222222 33344 99999997 88
Q ss_pred EEEeCCC--eEEEEecCCCCccccCCCCc-ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE---EecC
Q 039302 250 VSGDCNS--CIHLWEPASDATWNVDPNPF-IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS---FKAH 323 (479)
Q Consensus 250 ~sg~~dg--~I~lwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~---~~~h 323 (479)
++++.++ .|.+|+.......... ..+ ......+.+++++|++..+++ +..++.|+.||..+....+.. ...+
T Consensus 186 ~~~d~~~~~~I~~~d~~~~~~~~~~-g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 186 YSIGWEGTHTVYVYMKASGWAPTRI-GQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp EEEBSSTTCEEEEEEGGGTTCEEEE-EECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred EEEecCCCceEEEEEcCCCceeEEe-eeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCC
Confidence 8888766 7888887654321110 001 113456788999996552444 677889999999876421110 1112
Q ss_pred CCC--EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC---------------CCeEEEEEeCCCCCE
Q 039302 324 NAD--VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK---------------HPVTSIEWSPHEGST 386 (479)
Q Consensus 324 ~~~--v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~---------------~~I~~v~~sp~~~~~ 386 (479)
... .+.++|+|++..++++....+.|+.|+.... +..+.++. .....|+++|++ .+
T Consensus 264 ~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~------~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG-~l 336 (409)
T 3hrp_A 264 LGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE------CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG-NF 336 (409)
T ss_dssp CCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC------EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC-CE
T ss_pred CCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC------EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC-CE
Confidence 111 2389999965488888888899999987532 33333332 347899999965 78
Q ss_pred EEEEe-CCCcEEEEECCCC
Q 039302 387 LAVSS-ADNQLTIWDLSLE 404 (479)
Q Consensus 387 las~s-~Dg~I~iwdl~~~ 404 (479)
+++-+ .+++|+.|++..+
T Consensus 337 yvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 337 YIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp EEEETTTTCEEEEEETTTT
T ss_pred EEEeCCCCCEEEEEECCCC
Confidence 88887 8999999997654
No 204
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.26 E-value=2.5e-10 Score=121.12 Aligned_cols=206 Identities=10% Similarity=0.038 Sum_probs=131.4
Q ss_pred CCcceeEEEEecCCCcEEEEEeCC----ceEEEEeCCCCcccccccccccCCCCCccccCCCcE-EecCCCCceEEEEeC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADT----GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-KFGGHKDEGYAIDWN 242 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s 242 (479)
|...+..++|+|++..++.+.+.. .+|++||+.+ ++.+. .+.+ .....++|+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t---------------------g~~~~~~~~~--~k~~~~~Ws 183 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES---------------------KQPLETPLKD--VKFSGISWL 183 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT---------------------CSEEEEEEEE--EESCCCEEE
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC---------------------CCCCccccCC--ceeccEEEe
Confidence 445688889999995555444333 5799999987 33222 1111 113578899
Q ss_pred CCCCCeEEEEeCCC-------------eEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeC---CCcE
Q 039302 243 PVAPGRLVSGDCNS-------------CIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSV---DGNI 305 (479)
Q Consensus 243 ~~~~~~l~sg~~dg-------------~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~---dg~I 305 (479)
+++ .|+.++.+. .|++|++.+............. |...+..+.|+|+++.++++.+. ...|
T Consensus 184 -Dg~-~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i 261 (693)
T 3iuj_A 184 -GNE-GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRL 261 (693)
T ss_dssp -TTT-EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEE
T ss_pred -CCC-EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEE
Confidence 988 777777663 4999998775432111122233 44557889999999955555543 3589
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
.++|+.++......+..+....... |++++..++++...+ +.|.++|+.+... .....+..|...+. .|+|+
T Consensus 262 ~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~--~~~~~l~~~~~~~~--~~s~~ 336 (693)
T 3iuj_A 262 YVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP--AHWRDLIPERQQVL--TVHSG 336 (693)
T ss_dssp EEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG--GGCEEEECCCSSCE--EEEEE
T ss_pred EEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc--cccEEEecCCCCEE--EEEEE
Confidence 9999987643455666666655554 666665666666554 6899999987651 12345666666665 88887
Q ss_pred CCCEEEEEeCCC--cEEEEECCC
Q 039302 383 EGSTLAVSSADN--QLTIWDLSL 403 (479)
Q Consensus 383 ~~~~las~s~Dg--~I~iwdl~~ 403 (479)
+..++++...++ .|.+|++..
T Consensus 337 g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 337 SGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp TTEEEEEEEETTEEEEEEECTTS
T ss_pred CCEEEEEEEECCeeEEEEEECCC
Confidence 644444444555 688888764
No 205
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.24 E-value=5.4e-09 Score=97.61 Aligned_cols=193 Identities=11% Similarity=-0.021 Sum_probs=136.7
Q ss_pred EEEecCC-cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-CceEEEE
Q 039302 163 LRKVAHQ-GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-DEGYAID 240 (479)
Q Consensus 163 ~~~~~H~-~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~ 240 (479)
-++..+. ..++.+.+.|++ +++++ .++.|+.||. + ++.+..+..+. ..+.++.
T Consensus 29 w~~~~~~~~~~~~~~~~pdG-~ilvs--~~~~V~~~d~-~---------------------G~~~W~~~~~~~~~~~~~~ 83 (276)
T 3no2_A 29 WEYPLEKGWECNSVAATKAG-EILFS--YSKGAKMITR-D---------------------GRELWNIAAPAGCEMQTAR 83 (276)
T ss_dssp EEEECCTTCCCCEEEECTTS-CEEEE--CBSEEEEECT-T---------------------SCEEEEEECCTTCEEEEEE
T ss_pred EEeCCCccCCCcCeEECCCC-CEEEe--CCCCEEEECC-C---------------------CCEEEEEcCCCCccccccE
Confidence 3444454 478999999999 67773 5678999998 4 45666676543 4788999
Q ss_pred eCCCCCCeEEEEeC-CCeEEEEecCCCCccccCCC-CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 241 WNPVAPGRLVSGDC-NSCIHLWEPASDATWNVDPN-PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 241 ~s~~~~~~l~sg~~-dg~I~lwd~~~~~~~~~~~~-~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
+.+++. .|++.+. ++.|..++......+..... ....+......+++.+++. ++++.+.++.|..||.. ++ .+.
T Consensus 84 ~~~dG~-~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv~~~~~~~v~~~d~~-G~-~~w 159 (276)
T 3no2_A 84 ILPDGN-ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLVPLFATSEVREIAPN-GQ-LLN 159 (276)
T ss_dssp ECTTSC-EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEEEETTTTEEEEECTT-SC-EEE
T ss_pred ECCCCC-EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCC-EEEEecCCCEEEEECCC-CC-EEE
Confidence 999997 8888776 77888888632211221111 1112223455667889888 89999999999999988 65 556
Q ss_pred EEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC------CCeEEEEEeCCCCCEEEEEe
Q 039302 319 SFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK------HPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 319 ~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~------~~I~~v~~sp~~~~~las~s 391 (479)
.+... ....++.+.+++ .++++++.++.|..+|..+++ .+..+..+. ..++.+...+++ .++++..
T Consensus 160 ~~~~~-~~~~~~~~~~~g-~~~v~~~~~~~v~~~d~~tG~----~~w~~~~~~~~~~~l~~~~~~~~~~~G-~i~v~~~ 231 (276)
T 3no2_A 160 SVKLS-GTPFSSAFLDNG-DCLVACGDAHCFVQLNLESNR----IVRRVNANDIEGVQLFFVAQLFPLQNG-GLYICNW 231 (276)
T ss_dssp EEECS-SCCCEEEECTTS-CEEEECBTTSEEEEECTTTCC----EEEEEEGGGSBSCCCSEEEEEEECTTS-CEEEEEE
T ss_pred EEECC-CCccceeEcCCC-CEEEEeCCCCeEEEEeCcCCc----EEEEecCCCCCCccccccccceEcCCC-CEEEEec
Confidence 66544 345667888888 888888888899999999888 777776432 237888888855 7777764
No 206
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.24 E-value=2.3e-09 Score=102.87 Aligned_cols=199 Identities=7% Similarity=-0.053 Sum_probs=134.1
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC-----CceEEEEe
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK-----DEGYAIDW 241 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-----~~v~~l~~ 241 (479)
........+++++++ .+.++...++.|.+||..+ .+....+.... .....|++
T Consensus 81 ~~~~~p~~i~~~~~g-~lyv~~~~~~~v~~iD~~t---------------------~~~~~~i~~g~~~~~~~~p~~i~~ 138 (328)
T 3dsm_A 81 TGFTSPRYIHFLSDE-KAYVTQIWDYRIFIINPKT---------------------YEITGYIECPDMDMESGSTEQMVQ 138 (328)
T ss_dssp ECCSSEEEEEEEETT-EEEEEEBSCSEEEEEETTT---------------------TEEEEEEECTTCCTTTCBCCCEEE
T ss_pred CCCCCCcEEEEeCCC-eEEEEECCCCeEEEEECCC---------------------CeEEEEEEcCCccccCCCcceEEE
Confidence 445678899999988 7777765889999999886 22222332211 14456666
Q ss_pred CCCCCCeEEEEe--CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC----------CcEEEEE
Q 039302 242 NPVAPGRLVSGD--CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----------GNIAIWD 309 (479)
Q Consensus 242 s~~~~~~l~sg~--~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----------g~I~iwD 309 (479)
.+. .|+.++ .++.|.++|+.++..... +.. ......+.++|+++ +++++..+ +.|.++|
T Consensus 139 --~~~-~lyv~~~~~~~~v~viD~~t~~~~~~----i~~-g~~p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~~v~~id 209 (328)
T 3dsm_A 139 --YGK-YVYVNCWSYQNRILKIDTETDKVVDE----LTI-GIQPTSLVMDKYNK-MWTITDGGYEGSPYGYEAPSLYRID 209 (328)
T ss_dssp --ETT-EEEEEECTTCCEEEEEETTTTEEEEE----EEC-SSCBCCCEECTTSE-EEEEBCCBCTTCSSCBCCCEEEEEE
T ss_pred --ECC-EEEEEcCCCCCEEEEEECCCCeEEEE----EEc-CCCccceEEcCCCC-EEEEECCCccCCccccCCceEEEEE
Confidence 333 555554 488999999987543221 111 22346789999988 77666554 7899999
Q ss_pred cCCCCceeeEEecC-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEE
Q 039302 310 TRVGKSALMSFKAH-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 310 ~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~la 388 (479)
..+.+ ....+... ....+.++|+|++ ..|.++.. .|.+||+.+.+... ...+..+......++++|+++.+++
T Consensus 210 ~~t~~-v~~~~~~~~g~~p~~la~~~d~-~~lyv~~~--~v~~~d~~t~~~~~--~~~~~~~~~~p~gi~vdp~~g~lyv 283 (328)
T 3dsm_A 210 AETFT-VEKQFKFKLGDWPSEVQLNGTR-DTLYWINN--DIWRMPVEADRVPV--RPFLEFRDTKYYGLTVNPNNGEVYV 283 (328)
T ss_dssp TTTTE-EEEEEECCTTCCCEEEEECTTS-CEEEEESS--SEEEEETTCSSCCS--SCSBCCCSSCEEEEEECTTTCCEEE
T ss_pred CCCCe-EEEEEecCCCCCceeEEEecCC-CEEEEEcc--EEEEEECCCCceee--eeeecCCCCceEEEEEcCCCCeEEE
Confidence 98874 44344322 3468999999988 55555443 89999998776210 0111222457889999997778888
Q ss_pred EE----eCCCcEEEEECC
Q 039302 389 VS----SADNQLTIWDLS 402 (479)
Q Consensus 389 s~----s~Dg~I~iwdl~ 402 (479)
+. ..++.|.+||..
T Consensus 284 a~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 284 ADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EECTTSSSEEEEEEECTT
T ss_pred EcccccccCCEEEEECCC
Confidence 87 678999999987
No 207
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.23 E-value=2.9e-09 Score=100.93 Aligned_cols=237 Identities=7% Similarity=-0.061 Sum_probs=148.2
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
++..+........|+|++..++++...++.|..|+... . ...+..+...+.++++++
T Consensus 39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----------------------~-~~~~~~~~~~~~gl~~d~ 95 (305)
T 3dr2_A 39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG----------------------T-VDVLLDATAFTNGNAVDA 95 (305)
T ss_dssp EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTS----------------------C-EEEEEESCSCEEEEEECT
T ss_pred EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCC----------------------C-EEEEeCCCCccceeeECC
Confidence 34455667788999999966888988999999998743 1 234444566789999999
Q ss_pred CCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECCCCCcEEEE----EeC-------------CCcE
Q 039302 244 VAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSPTESDVFAS----CSV-------------DGNI 305 (479)
Q Consensus 244 ~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s----~s~-------------dg~I 305 (479)
++. ++++...++.|.+|+.. +..... .....+ ....+++++++|++. ++++ |.. .+.|
T Consensus 96 dG~-l~v~~~~~~~v~~~~~~-g~~~~~-~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v 171 (305)
T 3dr2_A 96 QQR-LVHCEHGRRAITRSDAD-GQAHLL-VGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSV 171 (305)
T ss_dssp TSC-EEEEETTTTEEEEECTT-SCEEEE-ECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEE
T ss_pred CCC-EEEEECCCCEEEEECCC-CCEEEE-EeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeE
Confidence 986 55555556899999975 332111 111111 123577899999998 7765 332 2457
Q ss_pred EEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC------CeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEE
Q 039302 306 AIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD------GTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIE 378 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d------g~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~ 378 (479)
..||..+++. ..+. .....+.++|+|++ ..|+.+... +.|.+||+..... .....+ .........++
T Consensus 172 ~~~d~~~g~~--~~~~-~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l--~~~~~~~~~~~~~pdgi~ 245 (305)
T 3dr2_A 172 YRLPPDGSPL--QRMA-DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGAL--HDRRHFASVPDGLPDGFC 245 (305)
T ss_dssp EEECSSSCCC--EEEE-EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEE--EEEEEEECCSSSCCCSEE
T ss_pred EEEcCCCCcE--EEEe-cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCc--cCCeEEEECCCCCCCeEE
Confidence 7777765542 2222 34567899999999 555554443 7899999864320 011111 11234456788
Q ss_pred EeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc
Q 039302 379 WSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA 458 (479)
Q Consensus 379 ~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~ 458 (479)
+++++ ++.++ +.+ .|.+|+.... .+..... ...+..++|.|++..|.+++.
T Consensus 246 ~d~~G-~lwv~-~~~-gv~~~~~~g~-------------------------~~~~~~~-~~~~~~~~f~~d~~~L~it~~ 296 (305)
T 3dr2_A 246 VDRGG-WLWSS-SGT-GVCVFDSDGQ-------------------------LLGHIPT-PGTASNCTFDQAQQRLFITGG 296 (305)
T ss_dssp ECTTS-CEEEC-CSS-EEEEECTTSC-------------------------EEEEEEC-SSCCCEEEECTTSCEEEEEET
T ss_pred ECCCC-CEEEe-cCC-cEEEECCCCC-------------------------EEEEEEC-CCceeEEEEeCCCCEEEEEcC
Confidence 99865 64444 444 4899987432 1222222 235889999988865666554
Q ss_pred CCCce
Q 039302 459 ADGFN 463 (479)
Q Consensus 459 ~dgi~ 463 (479)
+++.
T Consensus 297 -~~l~ 300 (305)
T 3dr2_A 297 -PCLW 300 (305)
T ss_dssp -TEEE
T ss_pred -CeEE
Confidence 5433
No 208
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.13 E-value=6.3e-09 Score=98.53 Aligned_cols=205 Identities=5% Similarity=0.019 Sum_probs=135.6
Q ss_pred CCcceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEeCCCC
Q 039302 168 HQGCVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDWNPVA 245 (479)
Q Consensus 168 H~~~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~s~~~ 245 (479)
+...+..+.+.++ + .++++.. .+.|.+||........ . .....+ ....+.++++.+++
T Consensus 69 ~~~~~~~i~~~~~~g-~l~v~~~-~~~l~~~d~~g~~~~~-----------------~-~~~~~~~~~~~~~~i~~d~~g 128 (314)
T 1pjx_A 69 YGGIPAGCQCDRDAN-QLFVADM-RLGLLVVQTDGTFEEI-----------------A-KKDSEGRRMQGCNDCAFDYEG 128 (314)
T ss_dssp EECCEEEEEECSSSS-EEEEEET-TTEEEEEETTSCEEEC-----------------C-SBCTTSCBCBCCCEEEECTTS
T ss_pred CCCCCceEEEecCCC-cEEEEEC-CCCEEEEeCCCCEEEE-----------------E-eccCCCccccCCcCEEECCCC
Confidence 4567899999999 6 6665544 3478889876210000 0 000001 12357899999988
Q ss_pred CCeEEEEeCC---------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEEC----CCCCcEEEEEeCCCcEE
Q 039302 246 PGRLVSGDCN---------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS----PTESDVFASCSVDGNIA 306 (479)
Q Consensus 246 ~~~l~sg~~d---------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s----p~~~~~l~s~s~dg~I~ 306 (479)
. ++++...+ +.|..|+.. +.. . .+..+......++|+ |+++.++++...++.|.
T Consensus 129 ~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~----~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~ 201 (314)
T 1pjx_A 129 N-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM-I----QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLW 201 (314)
T ss_dssp C-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE-E----EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEE
T ss_pred C-EEEEecCcccccccccccccCCCCeEEEECCC-CCE-E----EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEE
Confidence 6 66665544 567777754 222 1 122233456889999 99874566666789999
Q ss_pred EEEcC-CCCc----eeeEEecCC-CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe
Q 039302 307 IWDTR-VGKS----ALMSFKAHN-ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS 380 (479)
Q Consensus 307 iwD~~-~~~~----~~~~~~~h~-~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s 380 (479)
+||+. .+.. ....+..+. ..+..+++++++ .++++...++.|.+||..+++ .+..+..+...+++++|+
T Consensus 202 ~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G-~l~v~~~~~~~i~~~d~~~g~----~~~~~~~~~~~~~~i~~~ 276 (314)
T 1pjx_A 202 SYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDN-NLLVANWGSSHIEVFGPDGGQ----PKMRIRCPFEKPSNLHFK 276 (314)
T ss_dssp EEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTC-CEEEEEETTTEEEEECTTCBS----CSEEEECSSSCEEEEEEC
T ss_pred EEECCCCCccccceEEEECCCCCCCCCCceEECCCC-CEEEEEcCCCEEEEEcCCCCc----EeEEEeCCCCCceeEEEC
Confidence 99986 3321 112223333 567899999998 888888788999999998665 455666666789999999
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCC
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
|++..++++...++.|..|++...
T Consensus 277 ~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 277 PQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCEEEEEeCCCCeEEEEeCCCC
Confidence 966326666666789999998754
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.13 E-value=1.2e-08 Score=109.02 Aligned_cols=199 Identities=10% Similarity=0.005 Sum_probs=126.9
Q ss_pred eeEEEEecCCCcEEEEEeCCc--------------eEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--CCCCc
Q 039302 172 VNRIRAMSQNPHICASWADTG--------------HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--GHKDE 235 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~dg--------------~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~ 235 (479)
+..+.|+|+ ..++.+ +.++ .|++|++.+.. ......+. .+...
T Consensus 211 ~~~~~wspD-~~l~~~-~~~~~~~~~~~~~~~~~~~v~~~~lgt~~-------------------~~~~lv~~~~~~~~~ 269 (741)
T 1yr2_A 211 FSGLAWLGN-DALLYS-RFAEPKEGQAFQALNYNQTVWLHRLGTPQ-------------------SADQPVFATPELPKR 269 (741)
T ss_dssp SCCCEESTT-SEEEEE-ECCCC--------CCCCCEEEEEETTSCG-------------------GGCEEEECCTTCTTC
T ss_pred eccEEEECC-CEEEEE-EecCcccccccccCCCCCEEEEEECCCCc-------------------hhCEEEeccCCCCeE
Confidence 467899999 666665 4433 38899986521 11122232 33335
Q ss_pred eEEEEeCCCCCCeEEEEeCCC-----eEEEEecCCC--CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC----CCc
Q 039302 236 GYAIDWNPVAPGRLVSGDCNS-----CIHLWEPASD--ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV----DGN 304 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~~dg-----~I~lwd~~~~--~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~----dg~ 304 (479)
+..+.|+|++. +|+..+.++ .|++||+.++ ..+ ..+..+...+.... +|++. .|+..+. ++.
T Consensus 270 ~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~~d~~~~~~~~~----~~l~~~~~~~~~~~-~~dg~-~l~~~s~~~~~~~~ 342 (741)
T 1yr2_A 270 GHGASVSSDGR-WVVITSSEGTDPVNTVHVARVTNGKIGPV----TALIPDLKAQWDFV-DGVGD-QLWFVSGDGAPLKK 342 (741)
T ss_dssp EEEEEECTTSC-EEEEEEECTTCSCCEEEEEEEETTEECCC----EEEECSSSSCEEEE-EEETT-EEEEEECTTCTTCE
T ss_pred EEEEEECCCCC-EEEEEEEccCCCcceEEEEECCCCCCccc----EEecCCCCceEEEE-eccCC-EEEEEECCCCCCCE
Confidence 88999999998 777766543 8999999765 201 22333444444443 47888 5655554 345
Q ss_pred EEEEEcCCC-CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CCCCCceEEEeec-CCCCeEEEEEeC
Q 039302 305 IAIWDTRVG-KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL-LKGGDSVVAHFEY-HKHPVTSIEWSP 381 (479)
Q Consensus 305 I~iwD~~~~-~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~-~~~~~~~~~~~~~-h~~~I~~v~~sp 381 (479)
|.+||+.++ ......+..+...+..++|. .+ .++++...++..+||.+.. +. ....+.. +...|..+.++|
T Consensus 343 l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~-~lv~~~~~dg~~~l~~~~~~g~----~~~~l~~~~~~~v~~~~~s~ 416 (741)
T 1yr2_A 343 IVRVDLSGSTPRFDTVVPESKDNLESVGIA-GN-RLFASYIHDAKSQVLAFDLDGK----PAGAVSLPGIGSASGLSGRP 416 (741)
T ss_dssp EEEEECSSSSCEEEEEECCCSSEEEEEEEE-BT-EEEEEEEETTEEEEEEEETTSC----EEEECBCSSSCEEEEEECCB
T ss_pred EEEEeCCCCccccEEEecCCCCeEEEEEEE-CC-EEEEEEEECCEEEEEEEeCCCC----ceeeccCCCCeEEEEeecCC
Confidence 999998874 22233334444556677887 34 7889999999877776542 22 4555654 366789999999
Q ss_pred CCCCEEEEEeC---CCcEEEEECCCC
Q 039302 382 HEGSTLAVSSA---DNQLTIWDLSLE 404 (479)
Q Consensus 382 ~~~~~las~s~---Dg~I~iwdl~~~ 404 (479)
++..++++.+. .++|++||+.++
T Consensus 417 d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 417 GDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp TCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred CCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 76455554443 578999998764
No 210
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.09 E-value=1.3e-08 Score=96.00 Aligned_cols=195 Identities=10% Similarity=0.072 Sum_probs=128.1
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC--CCCceEEEEeCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG--HKDEGYAIDWNP 243 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~s~ 243 (479)
..+...+.++.+.+++. ++++ . ++.|.+||..... ...+..... ....++++++.|
T Consensus 50 ~~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~~g~-------------------~~~~~~~~~~~~~~~~~di~~d~ 107 (297)
T 3g4e_A 50 VTMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWKEQS-------------------AVVLATVDNDKKNNRFNDGKVDP 107 (297)
T ss_dssp EECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETTTTE-------------------EEEEEECCTTCSSEEEEEEEECT
T ss_pred EeCCCceEEEEECCCCC-EEEE-E-CCeEEEEECCCCc-------------------EEEEEecCCCCCCCCCCCEEECC
Confidence 34567899999999995 5554 3 5679999986521 111111111 123578899999
Q ss_pred CCCCeEEEEeCC---------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC--C
Q 039302 244 VAPGRLVSGDCN---------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR--V 312 (479)
Q Consensus 244 ~~~~~l~sg~~d---------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~--~ 312 (479)
++. ++++.... ....||.+...+... .+..+....+.++|+|+++.++++.+.++.|.+||+. +
T Consensus 108 dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~ 182 (297)
T 3g4e_A 108 AGR-YFAGTMAEETAPAVLERHQGALYSLFPDHHVK----KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQT 182 (297)
T ss_dssp TSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSCEE----EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTT
T ss_pred CCC-EEEecCCcccccccccCCCcEEEEEECCCCEE----EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCC
Confidence 986 55544221 234555554322211 1223334568999999998566777778999999984 3
Q ss_pred CCc----eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe-CCCCCEE
Q 039302 313 GKS----ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS-PHEGSTL 387 (479)
Q Consensus 313 ~~~----~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s-p~~~~~l 387 (479)
+.. ....+..+......+++.+++ ++.++....+.|.+||..+++ .+..+..+...+++++|. |+...++
T Consensus 183 G~~~~~~~~~~~~~~~~~p~g~~~d~~G-~lwva~~~~~~v~~~d~~tG~----~~~~i~~p~~~~t~~~f~g~d~~~L~ 257 (297)
T 3g4e_A 183 GQISNRRSVYKLEKEEQIPDGMCIDAEG-KLWVACYNGGRVIRLDPVTGK----RLQTVKLPVDKTTSCCFGGKNYSEMY 257 (297)
T ss_dssp CCEEEEEEEEECCGGGCEEEEEEEBTTS-CEEEEEETTTEEEEECTTTCC----EEEEEECSSSBEEEEEEESGGGCEEE
T ss_pred CcccCcEEEEECCCCCCCCCeeEECCCC-CEEEEEcCCCEEEEEcCCCce----EEEEEECCCCCceEEEEeCCCCCEEE
Confidence 321 112222334567899999998 888888888899999998777 778888777789999998 7654455
Q ss_pred EEEeC
Q 039302 388 AVSSA 392 (479)
Q Consensus 388 as~s~ 392 (479)
++...
T Consensus 258 vt~~~ 262 (297)
T 3g4e_A 258 VTCAR 262 (297)
T ss_dssp EEEBC
T ss_pred EEcCC
Confidence 55543
No 211
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.08 E-value=1.7e-07 Score=91.40 Aligned_cols=237 Identities=11% Similarity=0.049 Sum_probs=144.2
Q ss_pred EEEEecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-------CCceE
Q 039302 174 RIRAMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-------KDEGY 237 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 237 (479)
.+.++|++..+.++.. .++.|.+||..+ .+.+.++... ...-.
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t---------------------~~~~~~i~~~~~~~~~~g~~p~ 128 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT---------------------FLPIADIELPDAPRFDVGPYSW 128 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC---------------------CcEEEEEECCCccccccCCCcc
Confidence 8999999966665532 367899999976 2233322111 12345
Q ss_pred EEEeCCCCCCeEEEEeC--CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 238 AIDWNPVAPGRLVSGDC--NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
.++|+|+++ +|+++.. ++.|.++| .++.... .+.... .++.+.|.+...+++.+.||.+.++|. +++
T Consensus 129 ~~~~spDG~-~l~v~n~~~~~~v~viD-~t~~~~~----~~i~~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~- 197 (373)
T 2mad_H 129 MNANTPNNA-DLLFFQFAAGPAVGLVV-QGGSSDD----QLLSSP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGG- 197 (373)
T ss_pred ceEECCCCC-EEEEEecCCCCeEEEEE-CCCCEEe----EEcCCC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCc-
Confidence 899999998 8877763 57899999 7754321 101111 135566777668888889999999999 665
Q ss_pred eeeEEe-----cCCCC-EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec----------CCCCeEEEEE
Q 039302 316 ALMSFK-----AHNAD-VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY----------HKHPVTSIEW 379 (479)
Q Consensus 316 ~~~~~~-----~h~~~-v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~----------h~~~I~~v~~ 379 (479)
...... ....+ .....+.+++..++++. ..+.+.+.|+..... ..+..+.. .......+.+
T Consensus 198 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-~~~~v~vid~~~~~~--~v~~~~~~~~~~~~~~~~~p~g~~~~~~ 274 (373)
T 2mad_H 198 AAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV-YSGKILQADISAAGA--TNKAPIDALSGGRKADTWRPGGWQQVAY 274 (373)
T ss_pred EEEEEeccccccCCcceeecceeEecCCEEEEEc-CCceEEEEeccCCcc--eEeeeeeecCCcccccceecCceEeEEE
Confidence 221111 11122 23345666664444444 678999999975431 12222221 1223445788
Q ss_pred eCCCCCEEEEEe---------CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 380 SPHEGSTLAVSS---------ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 380 sp~~~~~las~s---------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
+|++..++++.. ..+.|.++|+.+.+. +.....+ .....++|+|++
T Consensus 275 s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v------------------------v~~i~~g-~~p~~i~~s~Dg 329 (373)
T 2mad_H 275 LKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT------------------------SSQISLG-HDVDAISVAQDG 329 (373)
T ss_pred CCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE------------------------EEEEECC-CCcCeEEECCCC
Confidence 886644444432 135799999987631 1222222 358999999999
Q ss_pred CcEEEEEc-CCC-ceEEeeecc
Q 039302 451 PGMIVSTA-ADG-FNILMPSNI 470 (479)
Q Consensus 451 ~~ll~s~~-~dg-i~iw~~~~~ 470 (479)
..+++++. .++ |.+|++.+.
T Consensus 330 ~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 330 GPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred CeEEEEEcCCCCeEEEEECCCC
Confidence 74555554 344 999998765
No 212
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.06 E-value=2.9e-07 Score=90.02 Aligned_cols=233 Identities=12% Similarity=0.002 Sum_probs=141.8
Q ss_pred cCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec------C-CCCceEEEEeCCCCCCeEEE
Q 039302 179 SQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG------G-HKDEGYAIDWNPVAPGRLVS 251 (479)
Q Consensus 179 p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-h~~~v~~l~~s~~~~~~l~s 251 (479)
++...+++++..+++|+|+|+.+....+ +...++. . ....-..+..+|++ .+++
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p-----------------~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs 153 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREP-----------------KIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYIS 153 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSC-----------------EEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCc-----------------eeeeeechhhcccccCCCcccceeECCCe--EEEE
Confidence 7778899999999999999997632211 2222221 0 11134567788887 6666
Q ss_pred EeCC------CeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCcEEEEEe-------------------CCCcE
Q 039302 252 GDCN------SCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESDVFASCS-------------------VDGNI 305 (479)
Q Consensus 252 g~~d------g~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~s-------------------~dg~I 305 (479)
+..+ |.|.+.|..+....... ..... ..--.++-|+|+++ .+++.. ...+|
T Consensus 154 ~~g~~~g~~~g~v~vlD~~T~~v~~~~--~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V 230 (462)
T 2ece_A 154 ALGNEEGEGPGGILMLDHYSFEPLGKW--EIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRI 230 (462)
T ss_dssp EEEETTSCSCCEEEEECTTTCCEEEEC--CSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEE
T ss_pred cCCCcCCCCCCeEEEEECCCCeEEEEE--ccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEE
Confidence 6555 78999999876543211 11111 12234688999998 777764 37899
Q ss_pred EEEEcCCCCceeeEEecCC--CCEEEEEE--cCCCCcEEEEEe-----CCCeEEEEeCCCCCCCCceEEEe--ecC----
Q 039302 306 AIWDTRVGKSALMSFKAHN--ADVNVISW--NRLASCLLASGS-----DDGTFSIHDLRLLKGGDSVVAHF--EYH---- 370 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~h~--~~v~~l~~--~p~~~~~l~sgs-----~dg~i~iwDlr~~~~~~~~~~~~--~~h---- 370 (479)
.+||+.+.+ .+.++.... .....|.| +|++...++++- .+++|.+|....+. ......+ ...
T Consensus 231 ~v~D~~~~k-~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~--~~~~~vIdi~~~~v~~ 307 (462)
T 2ece_A 231 HFWDLRKRK-RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK--WNAEKVIEIPAEPLEG 307 (462)
T ss_dssp EEEETTTTE-EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE--EEEEEEEEECCEECCS
T ss_pred EEEECCCCc-EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc--eeEEEEEeCCCccccc
Confidence 999999863 555554321 23344545 999955555555 77788877654321 1111111 110
Q ss_pred ------------CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-
Q 039302 371 ------------KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG- 437 (479)
Q Consensus 371 ------------~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g- 437 (479)
......|.++|++..+.++.-..+.|.+||+..... +..+-.+..|
T Consensus 308 ~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~---------------------~~lv~~I~tGG 366 (462)
T 2ece_A 308 NLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFK---------------------PVLTGKVKLGG 366 (462)
T ss_dssp SCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTS---------------------CEEEEEEECBT
T ss_pred cccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCC---------------------cEEEEEEEeCC
Confidence 234688999997744444444588999999963311 0111122221
Q ss_pred C-------------CCeeeEEEeCCCCcEEEEE
Q 039302 438 Q-------------KDLKELHWHTQVPGMIVST 457 (479)
Q Consensus 438 ~-------------~~V~~v~w~p~~~~ll~s~ 457 (479)
. .....++++|++..++++.
T Consensus 367 ~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 367 IFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp TTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 0 1368899999998777777
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.03 E-value=2e-07 Score=92.11 Aligned_cols=194 Identities=10% Similarity=-0.021 Sum_probs=131.0
Q ss_pred EEEecCCCcEEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEe----cCCCCceEEEEeCCCCCCe
Q 039302 175 IRAMSQNPHICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF----GGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 175 v~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~s~~~~~~ 248 (479)
++|+|++. .|+.+..++ .|.+|+.... .....+ ........+++++|.+. .
T Consensus 176 ia~~~~g~-~l~~~d~~~~~~I~~~d~~~~---------------------~~~~~~g~~~~~~~~~p~~iav~p~~g-~ 232 (409)
T 3hrp_A 176 PAVTKDKQ-RVYSIGWEGTHTVYVYMKASG---------------------WAPTRIGQLGSTFSGKIGAVALDETEE-W 232 (409)
T ss_dssp CEECTTSS-EEEEEBSSTTCEEEEEEGGGT---------------------TCEEEEEECCTTSCSCCCBCEECTTSS-E
T ss_pred eeEecCCC-cEEEEecCCCceEEEEEcCCC---------------------ceeEEeeeccchhcCCcEEEEEeCCCC-e
Confidence 89999995 444445544 7888887651 111222 11345678899999654 6
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcE--EEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC--
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASV--EDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN-- 324 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V--~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~-- 324 (479)
|+.+..++.|+.|++.+............++...- ..++|+|++..++++-..++.|+.|+.... +..+.++.
T Consensus 233 lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~ 309 (409)
T 3hrp_A 233 LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQ 309 (409)
T ss_dssp EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTC
T ss_pred EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCC
Confidence 66678889999999976543211000111222222 389999976657888788899999987653 22333222
Q ss_pred -------------CCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecC---------------CCCeE
Q 039302 325 -------------ADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYH---------------KHPVT 375 (479)
Q Consensus 325 -------------~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h---------------~~~I~ 375 (479)
.....+++++++ .++++-+ .++.|+.||+..+. +.++.++ -....
T Consensus 310 ~g~~dg~~~~~~~~~P~gia~d~dG-~lyvad~~~~~~I~~~~~~~G~-----v~~~~g~~~~~g~~~g~~~~~~~~~P~ 383 (409)
T 3hrp_A 310 KTVQDGLREEALFAQPNGMTVDEDG-NFYIVDGFKGYCLRKLDILDGY-----VSTVAGQVDVASQIDGTPLEATFNYPY 383 (409)
T ss_dssp CSCBCEEGGGCBCSSEEEEEECTTC-CEEEEETTTTCEEEEEETTTTE-----EEEEEECTTCBSCCCBSTTTCCBSSEE
T ss_pred CCcCCCcccccEeCCCeEEEEeCCC-CEEEEeCCCCCEEEEEECCCCE-----EEEEeCCCCCCCcCCCChhceEeCCce
Confidence 347899999999 7888888 88999999986553 4555554 24578
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
.|+++|+ +.++++-..+++|+.+++
T Consensus 384 giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 384 DICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred EEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 9999996 588888888899988775
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.96 E-value=2.7e-07 Score=88.25 Aligned_cols=188 Identities=9% Similarity=0.047 Sum_probs=120.7
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC----C-CCceEEEEe
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG----H-KDEGYAIDW 241 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h-~~~v~~l~~ 241 (479)
.+...+.++.+.+++ .++++ +.+ .|.+||.... +. ..+.. . ...+.++++
T Consensus 87 ~~~~~v~~i~~~~dg-~l~v~-~~~-gl~~~d~~~g---------------------~~-~~~~~~~~~~~~~~~~~i~~ 141 (326)
T 2ghs_A 87 ALPFMGSALAKISDS-KQLIA-SDD-GLFLRDTATG---------------------VL-TLHAELESDLPGNRSNDGRM 141 (326)
T ss_dssp ECSSCEEEEEEEETT-EEEEE-ETT-EEEEEETTTC---------------------CE-EEEECSSTTCTTEEEEEEEE
T ss_pred ECCCcceEEEEeCCC-eEEEE-ECC-CEEEEECCCC---------------------cE-EEEeeCCCCCCCCCCCCEEE
Confidence 345789999999998 55554 344 4999998651 11 11111 1 235889999
Q ss_pred CCCCCCeEEEEeC------CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC--CC
Q 039302 242 NPVAPGRLVSGDC------NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR--VG 313 (479)
Q Consensus 242 s~~~~~~l~sg~~------dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~--~~ 313 (479)
+|++. ++++... .+.|..++ + +... .+..+....+.++|+|+++.++++.+.++.|.+||+. ++
T Consensus 142 d~~G~-l~v~~~~~~~~~~~~~l~~~~--~-g~~~----~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~G 213 (326)
T 2ghs_A 142 HPSGA-LWIGTMGRKAETGAGSIYHVA--K-GKVT----KLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG 213 (326)
T ss_dssp CTTSC-EEEEEEETTCCTTCEEEEEEE--T-TEEE----EEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred CCCCC-EEEEeCCCcCCCCceEEEEEe--C-CcEE----EeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccC
Confidence 99986 5554432 24455555 3 2211 1222334578999999998455666667899999986 43
Q ss_pred -Cc----eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEe-CCCCCEE
Q 039302 314 -KS----ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWS-PHEGSTL 387 (479)
Q Consensus 314 -~~----~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~s-p~~~~~l 387 (479)
.. ....+.........+++.+++ .++++...++.|.+||. .++ .+..+..+...+++++|. |++..++
T Consensus 214 l~~~~~~~~~~~~~~~~~p~gi~~d~~G-~lwva~~~~~~v~~~d~-~g~----~~~~i~~~~~~~~~~af~g~d~~~L~ 287 (326)
T 2ghs_A 214 LPTGKAEVFIDSTGIKGGMDGSVCDAEG-HIWNARWGEGAVDRYDT-DGN----HIARYEVPGKQTTCPAFIGPDASRLL 287 (326)
T ss_dssp CBSSCCEEEEECTTSSSEEEEEEECTTS-CEEEEEETTTEEEEECT-TCC----EEEEEECSCSBEEEEEEESTTSCEEE
T ss_pred CcccCceEEEECCCCCCCCCeeEECCCC-CEEEEEeCCCEEEEECC-CCC----EEEEEECCCCCcEEEEEecCCCCEEE
Confidence 21 111222234557889999998 77777767789999998 444 567777777789999998 7654444
Q ss_pred EEEeCC
Q 039302 388 AVSSAD 393 (479)
Q Consensus 388 as~s~D 393 (479)
++...+
T Consensus 288 vt~~~~ 293 (326)
T 2ghs_A 288 VTSARE 293 (326)
T ss_dssp EEEBCT
T ss_pred EEecCC
Confidence 555444
No 215
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.94 E-value=3.8e-08 Score=94.94 Aligned_cols=245 Identities=13% Similarity=0.009 Sum_probs=144.7
Q ss_pred cceeEEEEecCCCcEEEEEe--CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWA--DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s--~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
..++.|+++|++ +++++.. .++.++||.+... . ..... ... ....+|...+.++++.+++.
T Consensus 17 ~~p~~va~~~~g-~~~v~~~~~~~~~~~l~~~~~g-~-~~~~p-----------~~~--~~~~~~~~~p~gv~~d~~g~- 79 (343)
T 2qe8_A 17 LAPGNITLTPDG-RLFLSLHQFYQPEMQVAELTQD-G-LIPFP-----------PQS--GNAIITFDTVLGIKSDGNGI- 79 (343)
T ss_dssp SCEEEEEECTTS-CEEEEECGGGCCSCSEEEEETT-E-EEESC-----------CCC--SSCCCCCSCEEEEEECSSSE-
T ss_pred CCcceEEECCCC-CEEEEeCCCCCCceEEEEECCC-C-eecCC-----------Ccc--cCcccceeEeeEEEEcCCCc-
Confidence 689999999999 6777753 2343556655421 1 10000 000 01124556899999999875
Q ss_pred eEEEEeC-----CCeEEEEecCCCCcccc-CC-CCcccCCCcEEEEEECCCCCcEEEEEe---CCCcEEEEEcCCCCcee
Q 039302 248 RLVSGDC-----NSCIHLWEPASDATWNV-DP-NPFIGHAASVEDLQWSPTESDVFASCS---VDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 248 ~l~sg~~-----dg~I~lwd~~~~~~~~~-~~-~~~~~h~~~V~~l~~sp~~~~~l~s~s---~dg~I~iwD~~~~~~~~ 317 (479)
++++-.. ++.|.+||+.++..... .. .....+...++++++++++..++++.+ .++.|.+||+.+++ ..
T Consensus 80 L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~ 158 (343)
T 2qe8_A 80 VWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AA 158 (343)
T ss_dssp EEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EE
T ss_pred EEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EE
Confidence 4444322 57999999987542211 01 111223456789999987664667766 68899999998664 22
Q ss_pred eEEecC-----------------------------CCCEEEEEEcCCCCcEEEEEeCCC-eEEEEeCCC---CCCCC---
Q 039302 318 MSFKAH-----------------------------NADVNVISWNRLASCLLASGSDDG-TFSIHDLRL---LKGGD--- 361 (479)
Q Consensus 318 ~~~~~h-----------------------------~~~v~~l~~~p~~~~~l~sgs~dg-~i~iwDlr~---~~~~~--- 361 (479)
..+..| ...++.|+|+|++ ..|+.+...+ .|..++... .....
T Consensus 159 r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg-~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~ 237 (343)
T 2qe8_A 159 RVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAEN-EWLYLSPMHSTSMYRIKSADLSNLQLTDAEL 237 (343)
T ss_dssp EECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTS-CEEEEEESSCSEEEEEEHHHHTCTTCCHHHH
T ss_pred EEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCC-CEEEEEeCCCCeEEEEEHHHhcCCCCChhhh
Confidence 222111 1246899999999 6666665555 565555321 11000
Q ss_pred -ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCC
Q 039302 362 -SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKD 440 (479)
Q Consensus 362 -~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~ 440 (479)
..+. ..++......++++++ +.++++...++.|.+||...+. ...+.....-..
T Consensus 238 ~~~~~-~~g~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G~-----------------------~~~~~~~~~~~~ 292 (343)
T 2qe8_A 238 GSKIE-RYSEKPICDGISIDKD-HNIYVGDLAHSAIGVITSADRA-----------------------YKLLVTDEKLSW 292 (343)
T ss_dssp HTTCE-EEEECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTTE-----------------------EEEEEECGGGSC
T ss_pred hcceE-ecccCCCCceEEECCC-CCEEEEccCCCeEEEEECCCCC-----------------------EEEEEECCceec
Confidence 0011 1233445678999996 4899999999999999983331 012222211235
Q ss_pred eeeEEEeCCCCcEEEEEcC
Q 039302 441 LKELHWHTQVPGMIVSTAA 459 (479)
Q Consensus 441 V~~v~w~p~~~~ll~s~~~ 459 (479)
+.+++|.+++. ++++++.
T Consensus 293 p~~va~~~~g~-l~v~~~~ 310 (343)
T 2qe8_A 293 TDSFNFGSDGY-LYFDCNQ 310 (343)
T ss_dssp EEEEEECTTSC-EEEEECC
T ss_pred CCeeEECCCCc-EEEEeCc
Confidence 89999999875 5555553
No 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.90 E-value=4.2e-07 Score=88.04 Aligned_cols=238 Identities=11% Similarity=0.078 Sum_probs=144.5
Q ss_pred EEEEecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-------CCceE
Q 039302 174 RIRAMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-------KDEGY 237 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 237 (479)
.+.++|++..++++.+ .++.|.+||..+ .+.+.++... ...-.
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t---------------------~~v~~~I~v~~g~r~~~g~~P~ 140 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT---------------------LLPTADIELPDAPRFLVGTYPW 140 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---------------------CCEEEEEEETTCCCCCBSCCGG
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---------------------CeEEEEEECCCccccccCCCCc
Confidence 3999999976666542 467899999987 4444444311 12456
Q ss_pred EEEeCCCCCCeEEEEeC--CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc
Q 039302 238 AIDWNPVAPGRLVSGDC--NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS 315 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~ 315 (479)
.++++|++. +|+++.. ++.|.++|+.+.+..... ... + |..+.|.+...|++.+.||++.+.++.....
T Consensus 141 ~~a~spDGk-~lyVan~~~~~~VsVID~~t~~vv~tI--~v~---g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~ 211 (386)
T 3sjl_D 141 MTSLTPDGK-TLLFYQFSPAPAVGVVDLEGKAFKRML--DVP---D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGT 211 (386)
T ss_dssp GEEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEE--ECC---S---EEEEEEEETTEEEEEETTSCEEEEECCSSSC
T ss_pred eEEEcCCCC-EEEEEEcCCCCeEEEEECCCCcEEEEE--ECC---C---cceeecCCCceeEEECCCCCEEEEECCCCCe
Confidence 799999998 7777653 689999999886442211 111 1 1223355555788888899999999986322
Q ss_pred eeeEEecC----CCCE-EEEEEc-CCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee----------cCCCCeEEEEE
Q 039302 316 ALMSFKAH----NADV-NVISWN-RLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE----------YHKHPVTSIEW 379 (479)
Q Consensus 316 ~~~~~~~h----~~~v-~~l~~~-p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~----------~h~~~I~~v~~ 379 (479)
.......+ ...+ +...|. +++ .+++ .+.+|.|++.|+..... ..+..+. .....+..+++
T Consensus 212 v~~~~~~~~~~~~~~~~~~~~~~~~dG-~~~~-vs~~g~V~v~d~~~~~~--~v~~~~~~~~~~~~~~g~~p~g~q~~a~ 287 (386)
T 3sjl_D 212 PEITHTEVFHPEDEFLINHPAYSQKAG-RLVW-PTYTGKIHQIDLSSGDA--KFLPAVEALTEAERADGWRPGGWQQVAY 287 (386)
T ss_dssp CEEEECCCCSCTTSCBCSCCEEETTTT-EEEE-EBTTSEEEEEECTTSSC--EECCCEESSCHHHHHTTEEECSSSCEEE
T ss_pred EEEeecceeccccccccccceeEcCCC-cEEE-EeCCCEEEEEECCCCcc--eeecceeccccccccccccCCCcceeeE
Confidence 22211111 1112 123554 455 4444 56689999999976541 0111121 01233445778
Q ss_pred eCCCCCEEEEEeC---------CCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCC
Q 039302 380 SPHEGSTLAVSSA---------DNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQV 450 (479)
Q Consensus 380 sp~~~~~las~s~---------Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~ 450 (479)
+|.+..++++... .+.|.+.|+.+.+. +.....+ ..+..|+++|++
T Consensus 288 ~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv------------------------~~~i~vg-~~~~~lavs~D~ 342 (386)
T 3sjl_D 288 HRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER------------------------LAKFEMG-HEIDSINVSQDE 342 (386)
T ss_dssp ETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE------------------------EEEEEEE-EEECEEEECSSS
T ss_pred CCCCCeEEEEeccccccccCCCCCEEEEEECCCCeE------------------------EEEEECC-CCcceEEECCCC
Confidence 9876444444331 25799999988742 2222222 268899999998
Q ss_pred C-cEEEEEcCCC-ceEEeeecc
Q 039302 451 P-GMIVSTAADG-FNILMPSNI 470 (479)
Q Consensus 451 ~-~ll~s~~~dg-i~iw~~~~~ 470 (479)
. .|+++...++ |.+++..+.
T Consensus 343 ~~~ly~tn~~~~~VsViD~~t~ 364 (386)
T 3sjl_D 343 KPLLYALSTGDKTLYIHDAESG 364 (386)
T ss_dssp SCEEEEEETTTTEEEEEETTTC
T ss_pred CeEEEEEcCCCCeEEEEECCCC
Confidence 5 4555555555 999987654
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.90 E-value=2.4e-06 Score=83.20 Aligned_cols=201 Identities=10% Similarity=0.039 Sum_probs=125.8
Q ss_pred eeEEEEecCCCcEEEEEeC-CceEEEEeCCCCcccccccccccCCCCCccccCCCcEE-ecCCCCceEEEEeCCCCCCeE
Q 039302 172 VNRIRAMSQNPHICASWAD-TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK-FGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 172 V~~v~~~p~~~~~lat~s~-dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~~~l 249 (479)
-..+.++|++..++++... ++.|.++| .. .+.+.+ +.. .. ++.+.|.+...+
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t---------------------~~~~~~~i~~-~~---~~~~~~~~~~~~ 180 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QG---------------------GSSDDQLLSS-PT---CYHIHPGAPSTF 180 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CC---------------------CCEEeEEcCC-Cc---eEEEEeCCCceE
Confidence 4578999999666655433 58899999 76 444444 322 11 245556665567
Q ss_pred EEEeCCCeEEEEecCCCCccccCC-CCcccCCCc-EEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEec----
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDP-NPFIGHAAS-VEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFKA---- 322 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~-~~~~~h~~~-V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~~---- 322 (479)
++.+.||.+.+++. +++...... ........+ .....+.+++..++++ +..+.+.+.|+..... .+..+..
T Consensus 181 ~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~ 258 (373)
T 2mad_H 181 YLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP-VYSGKILQADISAAGATNKAPIDALSGG 258 (373)
T ss_pred EEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE-cCCceEEEEeccCCcceEeeeeeecCCc
Confidence 77888999999999 654421100 011111122 2334566666634444 4678999999976531 1112211
Q ss_pred ------CCCCEEEEEEcCCCCcEEEEEe---------CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 323 ------HNADVNVISWNRLASCLLASGS---------DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 323 ------h~~~v~~l~~~p~~~~~l~sgs---------~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
.......+.++|++..++++.. ..+.|.++|+.+.+ .+..+.. .....+++|+|++..++
T Consensus 259 ~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~----vv~~i~~-g~~p~~i~~s~Dg~~~l 333 (373)
T 2mad_H 259 RKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQ----TSSQISL-GHDVDAISVAQDGGPDL 333 (373)
T ss_pred ccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCE----EEEEEEC-CCCcCeEEECCCCCeEE
Confidence 1223445788998854444433 23589999999887 6777754 44679999999764377
Q ss_pred EEEe-CCCcEEEEECCCCC
Q 039302 388 AVSS-ADNQLTIWDLSLEK 405 (479)
Q Consensus 388 as~s-~Dg~I~iwdl~~~~ 405 (479)
+++. .++.|.+||+.+.+
T Consensus 334 ~v~~~~~~~V~ViD~~t~~ 352 (373)
T 2mad_H 334 YALSAGTEVLHIYDAGAGD 352 (373)
T ss_pred EEEcCCCCeEEEEECCCCC
Confidence 7776 58999999998874
No 218
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.90 E-value=5.6e-08 Score=103.03 Aligned_cols=200 Identities=12% Similarity=0.092 Sum_probs=127.2
Q ss_pred CCCceEEEEeCCCCCCeEEE-----EeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC---
Q 039302 232 HKDEGYAIDWNPVAPGRLVS-----GDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--- 303 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~s-----g~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--- 303 (479)
|...+..++|||++. +||- |+....|++||+.++..... .+.. .....++|+ +++ .|+.++.+.
T Consensus 127 ~~~~l~~~~~SpDg~-~lAy~~~~~G~~~~~i~v~dl~tg~~~~~---~~~~--~k~~~~~Ws-Dg~-~l~y~~~~~~~~ 198 (693)
T 3iuj_A 127 GTTALDQLSFSRDGR-ILAYSLSLAGSDWREIHLMDVESKQPLET---PLKD--VKFSGISWL-GNE-GFFYSSYDKPDG 198 (693)
T ss_dssp SCCEEEEEEECTTSS-EEEEEEECSSCCEEEEEEEETTTCSEEEE---EEEE--EESCCCEEE-TTT-EEEEEESSCCC-
T ss_pred CcEEEEEEEECCCCC-EEEEEEecCCCceEEEEEEECCCCCCCcc---ccCC--ceeccEEEe-CCC-EEEEEEecCccc
Confidence 445788899999998 7763 23335799999988653211 1111 112467899 988 666666664
Q ss_pred ----------cEEEEEcCCCCce-eeEE--ec-CCCCEEEEEEcCCCCcEEEEEeCC---CeEEEEeCCCCCCCCceEEE
Q 039302 304 ----------NIAIWDTRVGKSA-LMSF--KA-HNADVNVISWNRLASCLLASGSDD---GTFSIHDLRLLKGGDSVVAH 366 (479)
Q Consensus 304 ----------~I~iwD~~~~~~~-~~~~--~~-h~~~v~~l~~~p~~~~~l~sgs~d---g~i~iwDlr~~~~~~~~~~~ 366 (479)
.|++|++.+.... ...+ .. |...+..+.|+|++..++++.+.+ +.|+++|+..... ....
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~---~~~~ 275 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENA---PLLT 275 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTC---CCEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCC---ceEE
Confidence 3999999876431 2222 33 455678899999995555555432 5899999987643 3455
Q ss_pred eecCCCCeEEEEEeCCCCCEEEEEeCC---CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeee
Q 039302 367 FEYHKHPVTSIEWSPHEGSTLAVSSAD---NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKE 443 (479)
Q Consensus 367 ~~~h~~~I~~v~~sp~~~~~las~s~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~ 443 (479)
+..+....... |+++++.+++.+..+ +.|..+++...... ..+.+..|. ..+.
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--------------------~~~~l~~~~--~~~~- 331 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--------------------HWRDLIPER--QQVL- 331 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG--------------------GCEEEECCC--SSCE-
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc--------------------ccEEEecCC--CCEE-
Confidence 66666666665 666565666666554 57889998765310 012233333 2343
Q ss_pred EEEeCCCCcEEEEEcCCC---ceEEee
Q 039302 444 LHWHTQVPGMIVSTAADG---FNILMP 467 (479)
Q Consensus 444 v~w~p~~~~ll~s~~~dg---i~iw~~ 467 (479)
.|++.+..++++...++ |.+|++
T Consensus 332 -~~s~~g~~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 332 -TVHSGSGYLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp -EEEEETTEEEEEEEETTEEEEEEECT
T ss_pred -EEEEECCEEEEEEEECCeeEEEEEEC
Confidence 88888887888877776 555554
No 219
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.80 E-value=5.3e-07 Score=88.86 Aligned_cols=114 Identities=7% Similarity=-0.089 Sum_probs=74.3
Q ss_pred CCCcEEEEEeCC----ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEe--
Q 039302 180 QNPHICASWADT----GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD-- 253 (479)
Q Consensus 180 ~~~~~lat~s~d----g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~-- 253 (479)
++..++++...+ +.|.++|..+ .+.+.++..-..+ .++++|+++ +|+++.
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t---------------------~~vv~~I~vG~~P--gia~SpDgk-~lyVan~~ 138 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGST---------------------GRILGMTDGGFLP--HPVAAEDGS-FFAQASTV 138 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTT---------------------TEEEEEEEECSSC--EEEECTTSS-CEEEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCC---------------------CEEEEEEECCCCC--ceEECCCCC-EEEEEecc
Confidence 444555555544 7999999987 5556666544445 899999998 666654
Q ss_pred --------CCCeEEEEecCCCCccccCC----CCcccCCCcEEEEEECCCCCcEEEEEe-C-CCcEEEEEcCCCCceeeE
Q 039302 254 --------CNSCIHLWEPASDATWNVDP----NPFIGHAASVEDLQWSPTESDVFASCS-V-DGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 254 --------~dg~I~lwd~~~~~~~~~~~----~~~~~h~~~V~~l~~sp~~~~~l~s~s-~-dg~I~iwD~~~~~~~~~~ 319 (479)
.++.|.++|..+........ ..+. .......+.|+|+++ +++++. . ++.|.+.|+.+.+ .+..
T Consensus 139 ~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~-~g~~P~~~~~spDGk-~lyV~n~~~~~~VsVID~~t~k-vv~~ 215 (426)
T 3c75_H 139 FERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFL-VGTYQWMNALTPDNK-NLLFYQFSPAPAVGVVDLEGKT-FDRM 215 (426)
T ss_dssp EEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCC-BSCCGGGSEECTTSS-EEEEEECSSSCEEEEEETTTTE-EEEE
T ss_pred ccccccCCCCCEEEEEECCCCcEEEEEECCCccccc-cCCCcceEEEcCCCC-EEEEEecCCCCeEEEEECCCCe-EEEE
Confidence 46799999998865422100 0000 012345689999999 555554 3 6889999999875 3434
Q ss_pred E
Q 039302 320 F 320 (479)
Q Consensus 320 ~ 320 (479)
+
T Consensus 216 I 216 (426)
T 3c75_H 216 L 216 (426)
T ss_dssp E
T ss_pred E
Confidence 4
No 220
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.78 E-value=2.2e-07 Score=87.80 Aligned_cols=203 Identities=11% Similarity=0.022 Sum_probs=130.0
Q ss_pred CCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC
Q 039302 224 SPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG 303 (479)
Q Consensus 224 ~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg 303 (479)
..+..+........+..|++++..+++++..++.|..|+. ++.. ..+..+...+..++++++++ ++++...++
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-----~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~ 107 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-----DVLLDATAFTNGNAVDAQQR-LVHCEHGRR 107 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE-----EEEEESCSCEEEEEECTTSC-EEEEETTTT
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-----EEEeCCCCccceeeECCCCC-EEEEECCCC
Confidence 3445555556677899999998746777778899999987 3332 22344556789999999998 666655668
Q ss_pred cEEEEEcCCCCceeeEEec-----CCCCEEEEEEcCCCCcEEEE----EeC-------------CCeEEEEeCCCCCCCC
Q 039302 304 NIAIWDTRVGKSALMSFKA-----HNADVNVISWNRLASCLLAS----GSD-------------DGTFSIHDLRLLKGGD 361 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~-----h~~~v~~l~~~p~~~~~l~s----gs~-------------dg~i~iwDlr~~~~~~ 361 (479)
.|.+|+.. ++ ...+.. ....++.+++.+++ .++++ |.. .+.|..||..++.
T Consensus 108 ~v~~~~~~-g~--~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~--- 180 (305)
T 3dr2_A 108 AITRSDAD-GQ--AHLLVGRYAGKRLNSPNDLIVARDG-AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSP--- 180 (305)
T ss_dssp EEEEECTT-SC--EEEEECEETTEECSCCCCEEECTTS-CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCC---
T ss_pred EEEEECCC-CC--EEEEEeccCCCccCCCCCEEECCCC-CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCc---
Confidence 89999986 43 222211 12346789999999 77776 332 2567888876555
Q ss_pred ceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC------CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 362 SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD------NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 362 ~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
..... .......++|+|++ ..|+.+... +.|.+|++..... .....+..
T Consensus 181 -~~~~~--~~~~p~gl~~spdg-~~lyv~~~~~~~~~~~~i~~~~~~~~~l---------------------~~~~~~~~ 235 (305)
T 3dr2_A 181 -LQRMA--DLDHPNGLAFSPDE-QTLYVSQTPEQGHGSVEITAFAWRDGAL---------------------HDRRHFAS 235 (305)
T ss_dssp -CEEEE--EESSEEEEEECTTS-SEEEEEECCC---CCCEEEEEEEETTEE---------------------EEEEEEEC
T ss_pred -EEEEe--cCCCCcceEEcCCC-CEEEEEecCCcCCCCCEEEEEEecCCCc---------------------cCCeEEEE
Confidence 22222 33456889999966 656555544 7899999864310 00111221
Q ss_pred cCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 436 QGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 436 ~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
.....+..+++.+++. +.+++ .++|.+|++
T Consensus 236 ~~~~~pdgi~~d~~G~-lwv~~-~~gv~~~~~ 265 (305)
T 3dr2_A 236 VPDGLPDGFCVDRGGW-LWSSS-GTGVCVFDS 265 (305)
T ss_dssp CSSSCCCSEEECTTSC-EEECC-SSEEEEECT
T ss_pred CCCCCCCeEEECCCCC-EEEec-CCcEEEECC
Confidence 1223466788999886 54444 556777765
No 221
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.76 E-value=1.9e-05 Score=72.83 Aligned_cols=201 Identities=6% Similarity=-0.055 Sum_probs=131.5
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..+..+++.+.+..++++-...+.|.++++.. ......+........++++.+.+...+
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g---------------------~~~~~~~~~~~~~p~~ia~d~~~~~ly 94 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHG---------------------GEPTTIIRQDLGSPEGIALDHLGRTIF 94 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSS---------------------CCCEEEECTTCCCEEEEEEETTTTEEE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCC---------------------CCcEEEEECCCCCccEEEEEecCCeEE
Confidence 45789999997768888877889999999875 122222222224678999998765244
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC--CCcEEEEEcCCCCceeeEE-ecCCCC
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV--DGNIAIWDTRVGKSALMSF-KAHNAD 326 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~--dg~I~iwD~~~~~~~~~~~-~~h~~~ 326 (479)
++-...+.|.++++........ ..........++++|++..++++... .+.|..+++.... ...+ ...-..
T Consensus 95 v~d~~~~~I~~~~~~g~~~~~~----~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~--~~~~~~~~~~~ 168 (267)
T 1npe_A 95 WTDSQLDRIEVAKMDGTQRRVL----FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN--RRILAQDNLGL 168 (267)
T ss_dssp EEETTTTEEEEEETTSCSCEEE----ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC--CEEEECTTCSC
T ss_pred EEECCCCEEEEEEcCCCCEEEE----EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC--cEEEEECCCCC
Confidence 5555677999999864322111 11112457899999976645555543 4688888886542 2222 223345
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.+.+++++++..++++-...+.|.++|+.... ....+.. ......++.. ++.++++....+.|.++|....
T Consensus 169 P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~----~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g 239 (267)
T 1npe_A 169 PNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG----RRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS 239 (267)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTEEE----EEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT
T ss_pred CcEEEEcCCCCEEEEEECCCCEEEEEecCCCc----eEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 78999999875777787788899999997543 2222332 2334567664 4466666666789999998766
No 222
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.76 E-value=1.3e-06 Score=84.64 Aligned_cols=203 Identities=11% Similarity=0.014 Sum_probs=119.3
Q ss_pred EEEEecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-------CCceE
Q 039302 174 RIRAMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-------KDEGY 237 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 237 (479)
.+.++|++..+.++.+ .++.|.+||..+ .+.+.++... .....
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T---------------------~~vv~~I~v~~~~~~~~g~~P~ 127 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVT---------------------FLPIADIELPDAPRFSVGPRVH 127 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTT---------------------CCEEEEEEETTSCSCCBSCCTT
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCC---------------------CCEEEEEECCCccccccCCCcc
Confidence 7999999976666642 478899999998 5556665432 12456
Q ss_pred EEEeCCCCCCeEEEEeC--CCeEEE--EecCCCCccccCC--CCcccC---------CCcEEEEEE--------------
Q 039302 238 AIDWNPVAPGRLVSGDC--NSCIHL--WEPASDATWNVDP--NPFIGH---------AASVEDLQW-------------- 288 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~--dg~I~l--wd~~~~~~~~~~~--~~~~~h---------~~~V~~l~~-------------- 288 (479)
.++++|+++ +|+++.. ...|.+ +|+.+-....+.. ..+..+ .+.+..+..
T Consensus 128 ~ia~SpDGk-~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~ 206 (368)
T 1mda_H 128 IIGNCASSA-CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC 206 (368)
T ss_dssp SEEECTTSS-CEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred eEEEcCCCC-EEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence 899999998 7777764 457888 8885510000000 000000 000000100
Q ss_pred ------------CCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEec-------C---CCCEEEEEEcCCCCcEEEEEe-
Q 039302 289 ------------SPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFKA-------H---NADVNVISWNRLASCLLASGS- 344 (479)
Q Consensus 289 ------------sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~~-------h---~~~v~~l~~~p~~~~~l~sgs- 344 (479)
.+++. .++..+. +.|.+.|+..... .+..+.. + ......+.++|++..++++..
T Consensus 207 t~~i~vg~~P~~~~~~~-~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~ 284 (368)
T 1mda_H 207 TGAQNCSSQAAQANYPG-MLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE 284 (368)
T ss_dssp CTTSCBCSCCEEETTTT-EEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred eeeeeCCCCccccccCC-EEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence 22233 2333333 6677777654321 1111100 0 011122689999855555443
Q ss_pred C-------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCcEEEEECCCCC
Q 039302 345 D-------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS-ADNQLTIWDLSLEK 405 (479)
Q Consensus 345 ~-------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s-~Dg~I~iwdl~~~~ 405 (479)
. ++.+.++|+.+.+ .+..+.... ....|.|+|++..++++.. .++.|.++|+.+.+
T Consensus 285 ~~~~~~~~~~~~~ViD~~t~~----vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 285 HSRSCLAAAENTSSVTASVGQ----TSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp CSSCTTSCEEEEEEEESSSCC----EEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ccCcccccCCCEEEEECCCCe----EEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 2 2356699999987 677766533 5789999997756788888 69999999999874
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.69 E-value=4.4e-09 Score=102.67 Aligned_cols=180 Identities=11% Similarity=0.025 Sum_probs=95.8
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
.++++++.||.|+.||..+ ++.+..+.. ..+.+..+..++. .+++++.||.|+.||
T Consensus 10 ~~v~~gs~dg~v~a~d~~t---------------------G~~~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d 65 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRT---------------------GSIKWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLG 65 (369)
T ss_dssp TEEEEEETTSEEEEEETTT---------------------CCEEEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-
T ss_pred CEEEEEcCCCEEEEEECCC---------------------CCEEEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEE
Confidence 5777889999999999887 566666655 4455555555555 778888999999999
Q ss_pred cCCCCc-cccCCCCccc--CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcE
Q 039302 263 PASDAT-WNVDPNPFIG--HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCL 339 (479)
Q Consensus 263 ~~~~~~-~~~~~~~~~~--h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~ 339 (479)
..+++. |... ..... ...++ +. .+. .+++++.++.|+.||.++++ .+..+..+. ...++|.+ ..
T Consensus 66 ~~tG~~~w~~~-~~~~~~~~~sp~----~~-~~~-~v~~g~~dg~v~a~D~~tG~-~~w~~~~~~----~~~~~p~~-~~ 132 (369)
T 2hz6_A 66 SKNNEGLTKLP-FTIPELVQASPC----RS-SDG-ILYMGKKQDIWYVIDLLTGE-KQQTLSSAF----ADSLSPST-SL 132 (369)
T ss_dssp ----CCSEECS-CCHHHHHTTCSC----C-------CCCCEEEEEEEEECCC----------------------------
T ss_pred CCCCceeeeee-ccCccccccCce----Ee-cCC-EEEEEeCCCEEEEEECCCCc-EEEEecCCC----cccccccC-CE
Confidence 977654 2211 10000 11111 11 233 67788889999999999986 444444332 23456666 78
Q ss_pred EEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC--CCEEEEEeCCCcEEEEECCCCC
Q 039302 340 LASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE--GSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 340 l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~--~~~las~s~Dg~I~iwdl~~~~ 405 (479)
|++++.++.|+.||.++++. +..+..+. .....+.+.. ...+++++.||.|..||..+++
T Consensus 133 v~~~~~dg~v~a~d~~tG~~----~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTREL----RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp EEEEEEEEEEECCCSSSSSC----CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred EEEEecCCEEEEEECCCCCE----EEeEeccc--ccCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 88899999999999998873 33332211 1122233211 1456778889999999998763
No 224
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.67 E-value=3.7e-06 Score=81.38 Aligned_cols=203 Identities=15% Similarity=0.097 Sum_probs=125.5
Q ss_pred ceeEEEEecCCCcEEEEEe-CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 171 CVNRIRAMSQNPHICASWA-DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s-~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
.-..+.++|++..++++.. .++.|.++|+.+ .+.+.++.... |..+.|.+...+
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t---------------------~~vv~tI~v~g----~~~~~P~g~~~~ 192 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG---------------------KAFKRMLDVPD----CYHIFPTAPDTF 192 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTT---------------------TEEEEEEECCS----EEEEEEEETTEE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCC---------------------CcEEEEEECCC----cceeecCCCcee
Confidence 4667899999966666643 368999999987 45555553211 112235444477
Q ss_pred EEEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEE-EEEEC-CCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEe----
Q 039302 250 VSGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVE-DLQWS-PTESDVFASCSVDGNIAIWDTRVGKS-ALMSFK---- 321 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~-~l~~s-p~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~---- 321 (479)
++.+.||.+.+.++.+.+.... ....+..-..++. ...|. ++++ ++..+.+|.|.+.|+..... ....+.
T Consensus 193 ~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~--~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 193 FMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR--LVWPTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp EEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE--EEEEBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred EEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc--EEEEeCCCEEEEEECCCCcceeecceecccc
Confidence 7888899998888866322111 0011111112221 23554 5664 33356689999999986531 111111
Q ss_pred ------cCCCCEEEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCE
Q 039302 322 ------AHNADVNVISWNRLASCLLASGSD---------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGST 386 (479)
Q Consensus 322 ------~h~~~v~~l~~~p~~~~~l~sgs~---------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~ 386 (479)
-.......+++++++..++++-.. .+.|.++|+.+.+ .+..+.. ...+++|+++|++..+
T Consensus 271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~k----v~~~i~v-g~~~~~lavs~D~~~~ 345 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGE----RLAKFEM-GHEIDSINVSQDEKPL 345 (386)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCC----EEEEEEE-EEEECEEEECSSSSCE
T ss_pred ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCe----EEEEEEC-CCCcceEEECCCCCeE
Confidence 012233457778988555554321 2579999999988 6777654 3478899999977446
Q ss_pred EEE-EeCCCcEEEEECCCCC
Q 039302 387 LAV-SSADNQLTIWDLSLEK 405 (479)
Q Consensus 387 las-~s~Dg~I~iwdl~~~~ 405 (479)
|++ ...++.|.++|..+.+
T Consensus 346 ly~tn~~~~~VsViD~~t~k 365 (386)
T 3sjl_D 346 LYALSTGDKTLYIHDAESGE 365 (386)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEcCCCCeEEEEECCCCc
Confidence 555 4559999999998874
No 225
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.66 E-value=4.3e-06 Score=82.31 Aligned_cols=202 Identities=12% Similarity=0.076 Sum_probs=119.7
Q ss_pred EEEEecCCCcEEEEEe---------CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-------CCceE
Q 039302 174 RIRAMSQNPHICASWA---------DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-------KDEGY 237 (479)
Q Consensus 174 ~v~~~p~~~~~lat~s---------~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~ 237 (479)
.+.++|++..++++.. .++.|.++|..+ .+.+.++.-- .....
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t---------------------~~vv~~I~v~g~~r~~~g~~P~ 180 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVT---------------------FLPIADIELPDAPRFLVGTYQW 180 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT---------------------CCEEEEEEETTCCCCCBSCCGG
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCC---------------------CcEEEEEECCCccccccCCCcc
Confidence 7999999977776643 467899999987 3444444211 12346
Q ss_pred EEEeCCCCCCeEEEEeC--CCeEEEEecCCCCccccCCCCcccC--------------------------CCcEE-----
Q 039302 238 AIDWNPVAPGRLVSGDC--NSCIHLWEPASDATWNVDPNPFIGH--------------------------AASVE----- 284 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h--------------------------~~~V~----- 284 (479)
.+.++|+++ +|+++.. ++.|.+.|+.+.+...... ..+. ...|.
T Consensus 181 ~~~~spDGk-~lyV~n~~~~~~VsVID~~t~kvv~~I~--v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~ 257 (426)
T 3c75_H 181 MNALTPDNK-NLLFYQFSPAPAVGVVDLEGKTFDRMLD--VPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTE 257 (426)
T ss_dssp GSEECTTSS-EEEEEECSSSCEEEEEETTTTEEEEEEE--CCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECC
T ss_pred eEEEcCCCC-EEEEEecCCCCeEEEEECCCCeEEEEEE--cCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeee
Confidence 789999998 7777763 5789999998754321100 0000 00000
Q ss_pred -----------EEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee-eEEec----------CCCCEEEEEEcCCCCcEEEE
Q 039302 285 -----------DLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL-MSFKA----------HNADVNVISWNRLASCLLAS 342 (479)
Q Consensus 285 -----------~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~-~~~~~----------h~~~v~~l~~~p~~~~~l~s 342 (479)
.+.|.+++. .++..+..+.|.+.|+......+ ..+.. .......++++|++..++++
T Consensus 258 ~~~v~~~p~~~~~~~~~dg~-~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa 336 (426)
T 3c75_H 258 VFHTEDELLINHPAFSLRSG-RLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLL 336 (426)
T ss_dssp CCSCTTSCBCSCCEECTTTC-EEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEE
T ss_pred eeccCCCceeeEeeecCCCC-EEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEE
Confidence 012233333 22222334455555554322100 00000 01111236888888555555
Q ss_pred Ee---------CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe-CCCcEEEEECCCCC
Q 039302 343 GS---------DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS-ADNQLTIWDLSLEK 405 (479)
Q Consensus 343 gs---------~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s-~Dg~I~iwdl~~~~ 405 (479)
.. ..+.|.++|+.+.+ .+.++.. ......|.|+|++..+++++. .++.|.++|+.+.+
T Consensus 337 ~~~~~~gthk~~s~~VsVID~~T~k----vv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 337 VDQRDEWKHKAASRFVVVLNAETGE----RINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTCC----EEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred ecccccccccCCCCEEEEEECCCCe----EEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 43 13579999999988 7777764 235789999997642777777 59999999998874
No 226
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.62 E-value=6.5e-07 Score=86.65 Aligned_cols=104 Identities=5% Similarity=-0.165 Sum_probs=67.8
Q ss_pred cEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEe-----
Q 039302 183 HICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGD----- 253 (479)
Q Consensus 183 ~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~----- 253 (479)
.++++-..++ +|.++|..+ .+.+.++.....+ .+.++|++. +|+++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t---------------------~~v~~~i~vG~~P--~i~~spDg~-~lyVan~~~~r 88 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGC---------------------GVTLGHSLGAFLS--LAVAGHSGS-DFALASTSFAR 88 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTT---------------------TEEEEEEEECTTC--EEEECTTSS-CEEEEEEEETT
T ss_pred eEEEECCccCCccceEEEEECCC---------------------CeEEEEEeCCCCC--ceEECCCCC-EEEEEcccccc
Confidence 4555545444 888999887 5666666544445 799999998 677665
Q ss_pred -----CCCeEEEEecCCCCccccCCCCcc--c---CCCcEEEEEECCCCCcEEEEEeC-CCcEEE--EEcCC
Q 039302 254 -----CNSCIHLWEPASDATWNVDPNPFI--G---HAASVEDLQWSPTESDVFASCSV-DGNIAI--WDTRV 312 (479)
Q Consensus 254 -----~dg~I~lwd~~~~~~~~~~~~~~~--~---h~~~V~~l~~sp~~~~~l~s~s~-dg~I~i--wD~~~ 312 (479)
.++.|.+||+.+....... ... . .......++++|+++.++++... +..|.+ +|+.+
T Consensus 89 ~~~G~~~~~VsviD~~T~~vv~~I--~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 89 SAKGKRTDYVEVFDPVTFLPIADI--ELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp TTSSSEEEEEEEECTTTCCEEEEE--EETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred cccCCCCCEEEEEECCCCCEEEEE--ECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 3689999999886542211 010 0 01234578999999944444333 467888 88865
No 227
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.60 E-value=4.7e-05 Score=70.09 Aligned_cols=161 Identities=7% Similarity=-0.029 Sum_probs=106.7
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
....+++|++.+...+++-...+.|..+++........ ..........++++|.+..++++....+.|.++++...
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~----~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI----IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE----ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE----EECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC
Confidence 35679999997652444555678999999865432111 11122467899999977657777777889999998754
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEE
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSD--DGTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~--dg~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~ 390 (479)
. ............+.++++|+++.++++... .+.|..+++.... ...+ ...-.....++++|+++.++++-
T Consensus 112 ~-~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-----~~~~~~~~~~~P~gia~d~~~~~lyv~d 185 (267)
T 1npe_A 112 Q-RRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-----RRILAQDNLGLPNGLTFDAFSSQLCWVD 185 (267)
T ss_dssp S-CEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-----CEEEECTTCSCEEEEEEETTTTEEEEEE
T ss_pred C-EEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-----cEEEEECCCCCCcEEEEcCCCCEEEEEE
Confidence 3 111222222467899999976466666544 4788888876432 2222 22234578999999765677777
Q ss_pred eCCCcEEEEECCCC
Q 039302 391 SADNQLTIWDLSLE 404 (479)
Q Consensus 391 s~Dg~I~iwdl~~~ 404 (479)
...+.|.++++...
T Consensus 186 ~~~~~I~~~~~~g~ 199 (267)
T 1npe_A 186 AGTHRAECLNPAQP 199 (267)
T ss_dssp TTTTEEEEEETTEE
T ss_pred CCCCEEEEEecCCC
Confidence 77889999998643
No 228
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.58 E-value=2.1e-05 Score=72.15 Aligned_cols=204 Identities=7% Similarity=-0.036 Sum_probs=136.1
Q ss_pred EEEecCCcc--eeEEEEecCCCcEEEEEeC--CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceE
Q 039302 163 LRKVAHQGC--VNRIRAMSQNPHICASWAD--TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGY 237 (479)
Q Consensus 163 ~~~~~H~~~--V~~v~~~p~~~~~lat~s~--dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~ 237 (479)
+..++|... ...+.|++++ .+.++.+. ++.|+++|+.+ ++.+..+.- ......
T Consensus 12 v~~~p~~~~~f~~Gl~~~~dg-~Lyvstg~~~~s~v~~iD~~t---------------------g~v~~~i~l~~~~fge 69 (266)
T 2iwa_A 12 LNEFPHDPYAFTQGLVYAEND-TLFESTGLYGRSSVRQVALQT---------------------GKVENIHKMDDSYFGE 69 (266)
T ss_dssp EEEEECCTTCCEEEEEECSTT-EEEEEECSTTTCEEEEEETTT---------------------CCEEEEEECCTTCCEE
T ss_pred EEEEECCCCCCcccEEEeCCC-eEEEECCCCCCCEEEEEECCC---------------------CCEEEEEecCCCcceE
Confidence 466778754 5799999986 66666543 67999999987 444554432 112333
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
.+++. +....++.-.++.+.++|..+...... .... ... ...+++++..++++- .++.|.++|..+.+ .+
T Consensus 70 Gi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~--i~~g--~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~-v~ 139 (266)
T 2iwa_A 70 GLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKN--FTHQ--MKD--GWGLATDGKILYGSD-GTSILYEIDPHTFK-LI 139 (266)
T ss_dssp EEEEE--TTEEEEEETTCSEEEEEETTTTEEEEE--EECC--SSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCC-EE
T ss_pred EEEEe--CCEEEEEEecCCEEEEEECCCCcEEEE--EECC--CCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCc-EE
Confidence 45554 332445555688999999987544221 1111 011 123455677566554 68899999999875 34
Q ss_pred eEEecC-----CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------------CCCeEEEEE
Q 039302 318 MSFKAH-----NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------------KHPVTSIEW 379 (479)
Q Consensus 318 ~~~~~h-----~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------------~~~I~~v~~ 379 (479)
..+... -..++.+.|. ++ .+++....++.|.+.|..+++ .+..+... ....+.|+|
T Consensus 140 ~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~----V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~ 213 (266)
T 2iwa_A 140 KKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGT----LLGWILLPNLRKKLIDEGFRDIDVLNGIAW 213 (266)
T ss_dssp EEEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCC----EEEEEECHHHHHHHHHTTCTTCCCEEEEEE
T ss_pred EEEEECCCCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCc----EEEEEECCCcccccccccccccCceEEEEE
Confidence 444321 1247888888 56 677777678999999999988 67776531 135689999
Q ss_pred eCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+|.+..+++++...+.|.+.++...
T Consensus 214 ~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 214 DQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp ETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cCCCCEEEEECCCCCeEEEEEEecc
Confidence 9987788888888999999988654
No 229
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.57 E-value=3.6e-06 Score=80.88 Aligned_cols=205 Identities=6% Similarity=-0.073 Sum_probs=125.6
Q ss_pred cCCcceeEEEEecCCCcEEEEEeC-----CceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec------CCCCc
Q 039302 167 AHQGCVNRIRAMSQNPHICASWAD-----TGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG------GHKDE 235 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~-----dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~h~~~ 235 (479)
.|-..+..+++.+++ .++++-.. ++.|.+||+.+. +.+.++. .+...
T Consensus 64 ~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i~~~d~~tg---------------------~~~~~~~~~~~~~~~~~~ 121 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKLVAWDTLNN---------------------QLSRVIYLPPPITLSNSF 121 (343)
T ss_dssp CCCSCEEEEEECSSS-EEEEEECHHHHTSCCEEEEEETTTT---------------------EEEEEEECCTTTSCTTCC
T ss_pred cceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeEEEEECCCC---------------------eEEEEEECChhhcccccc
Confidence 355689999999998 56665433 578999998752 2222222 12235
Q ss_pred eEEEEeCCCCCCeEEEEe---CCCeEEEEecCCCCccccCCC--Cc---------cc--------------CCCcEEEEE
Q 039302 236 GYAIDWNPVAPGRLVSGD---CNSCIHLWEPASDATWNVDPN--PF---------IG--------------HAASVEDLQ 287 (479)
Q Consensus 236 v~~l~~s~~~~~~l~sg~---~dg~I~lwd~~~~~~~~~~~~--~~---------~~--------------h~~~V~~l~ 287 (479)
...+++++.+...+++.. .++.|.+||+.++..+..... .+ .+ ....++.|+
T Consensus 122 ~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia 201 (343)
T 2qe8_A 122 VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV 201 (343)
T ss_dssp CCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE
T ss_pred cceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE
Confidence 678999986542445544 578999999976544332110 00 00 012468999
Q ss_pred ECCCCCcEEEEEeCCC-cEEEEEcC---CCC----ce--eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCC
Q 039302 288 WSPTESDVFASCSVDG-NIAIWDTR---VGK----SA--LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLL 357 (479)
Q Consensus 288 ~sp~~~~~l~s~s~dg-~I~iwD~~---~~~----~~--~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~ 357 (479)
|+|+++ .|+.+...+ .|..++.. ... .. .....++......+++++++ .++++...++.|.+||...+
T Consensus 202 ~s~dg~-~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G-~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 202 LDAENE-WLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDH-NIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp ECTTSC-EEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTC-CEEEEEGGGTEEEEEETTTT
T ss_pred eccCCC-EEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCC-CEEEEccCCCeEEEEECCCC
Confidence 999998 566655554 55555532 110 00 01122334456778999998 89999999999999998444
Q ss_pred CCCCceEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 358 KGGDSVVAHFE-YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 358 ~~~~~~~~~~~-~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
+ ...... .+...+++++|.++ +.++++.+..+.+.+|.
T Consensus 280 ~----~~~~~~~~~~~~p~~va~~~~-g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 280 A----YKLLVTDEKLSWTDSFNFGSD-GYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp E----EEEEEECGGGSCEEEEEECTT-SCEEEEECCGGGSGGGB
T ss_pred C----EEEEEECCceecCCeeEECCC-CcEEEEeCccccccccc
Confidence 3 222221 12456899999985 47777777655554443
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.53 E-value=2.1e-05 Score=76.95 Aligned_cols=193 Identities=19% Similarity=0.143 Sum_probs=120.3
Q ss_pred ceeEEEEecCCCcEEEEEeCC------ceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC---CCceEEEEe
Q 039302 171 CVNRIRAMSQNPHICASWADT------GHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH---KDEGYAIDW 241 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~d------g~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~l~~ 241 (479)
.-..+.+.|++ +++++..+ |.|.++|..+ .+.+.++... ..-.+.+.|
T Consensus 139 ~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD~~T---------------------~~v~~~~~~~~~~~~~~Yd~~~ 195 (462)
T 2ece_A 139 RLHTVHCGPDA--IYISALGNEEGEGPGGILMLDHYS---------------------FEPLGKWEIDRGDQYLAYDFWW 195 (462)
T ss_dssp EEEEEEECSSC--EEEEEEEETTSCSCCEEEEECTTT---------------------CCEEEECCSBCTTCCCCCCEEE
T ss_pred cccceeECCCe--EEEEcCCCcCCCCCCeEEEEECCC---------------------CeEEEEEccCCCCccccceEEE
Confidence 44567888998 55555555 7899999886 4555555422 123567889
Q ss_pred CCCCCCeEEEEe-------------------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE--CCCCCcEEEEEe
Q 039302 242 NPVAPGRLVSGD-------------------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW--SPTESDVFASCS 300 (479)
Q Consensus 242 s~~~~~~l~sg~-------------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~--sp~~~~~l~s~s 300 (479)
+|+++ .+++.. ...+|.+||+.+++.... ..+.........|.| +|+++..++++-
T Consensus 196 ~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t--I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e 272 (462)
T 2ece_A 196 NLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS--LTLGEENRMALELRPLHDPTKLMGFINMV 272 (462)
T ss_dssp ETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE--EESCTTEEEEEEEEECSSTTCCEEEEEEE
T ss_pred CCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE--EecCCCCCccceeEeeECCCCCEEEEEEe
Confidence 99998 787774 368999999987432111 111111223455655 999996677777
Q ss_pred -----CCCcEEEEEcCCCCc-eeeE--EecC----------------CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 301 -----VDGNIAIWDTRVGKS-ALMS--FKAH----------------NADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 301 -----~dg~I~iwD~~~~~~-~~~~--~~~h----------------~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
.+++|.+|....+.- .... +... ......|.+++++..+.++.-..+.|.+||+..
T Consensus 273 ~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 273 VSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp EETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred eeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 788898776554311 0111 1110 244678999999966666666788999999964
Q ss_pred CCCCCceEEEeecCC--------------CCeEEEEEeCCCCCEEEEEe
Q 039302 357 LKGGDSVVAHFEYHK--------------HPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 357 ~~~~~~~~~~~~~h~--------------~~I~~v~~sp~~~~~las~s 391 (479)
... ...+..+.... +.-..++++|++ ++|+++.
T Consensus 353 ~~~-~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDG-k~LyVaN 399 (462)
T 2ece_A 353 PFK-PVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDG-RRVYVTN 399 (462)
T ss_dssp TTS-CEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTS-SEEEEEC
T ss_pred CCC-cEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCC-CEEEEEc
Confidence 321 22444443211 125789999976 6666665
No 231
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=6.9e-05 Score=71.10 Aligned_cols=220 Identities=12% Similarity=-0.023 Sum_probs=121.2
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCc-ccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHL-NALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
.....+++.+++ .++.++..++.|..|+..... ..+.... ........................+|++.+... .
T Consensus 19 ~~p~~i~~d~~g-~~l~v~~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~ 93 (322)
T 2fp8_A 19 YAPNSFTFDSTN-KGFYTSVQDGRVIKYEGPNSGFVDFAYAS---PYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-Q 93 (322)
T ss_dssp SCCCCEECCTTC-SSEEEECTTSEEEEECCTTTCEEEEEESC---TTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-E
T ss_pred CCceEEEEcCCC-CEEEEEcCCCeEEEECCCCCceEEEeccc---ccccccccccccchhccccCCCCceEEEcCCCC-c
Confidence 456778899987 555567888999999876511 0000000 000000000000000000012468899987332 6
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCccc-CCCcEEEEEECC-CCCcEEEEEeC-----------------CCcEEEEE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIG-HAASVEDLQWSP-TESDVFASCSV-----------------DGNIAIWD 309 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h~~~V~~l~~sp-~~~~~l~s~s~-----------------dg~I~iwD 309 (479)
|+.++..+.|..++..++..... .....+ .....+++++.+ ++. ++++-.. ++.|..||
T Consensus 94 l~v~d~~~~i~~~d~~~g~~~~~-~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 94 LYIVDCYYHLSVVGSEGGHATQL-ATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEEETTTEEEEECTTCEECEEE-ESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEEECCCCEEEEeCCCCEEEEe-cccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEe
Confidence 77776666788888764322111 011111 123578999999 887 6665432 36788888
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
..++. +..+.......+.|+|+|++..++++-+..+.|.+|++..... . ....+....+ ...+++.+++ +++++
T Consensus 172 ~~~~~--~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~-~~~~~~~~~g-P~gi~~d~~G-~l~va 245 (322)
T 2fp8_A 172 PSTKE--TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-G-TAEVLVKIPN-PGNIKRNADG-HFWVS 245 (322)
T ss_dssp TTTTE--EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-T-CEEEEEECSS-EEEEEECTTS-CEEEE
T ss_pred CCCCE--EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-C-ccceEEeCCC-CCCeEECCCC-CEEEE
Confidence 87653 2222222234577999999844566666778999999875321 0 1222221223 7889999965 66665
Q ss_pred EeC----------CCcEEEEECC
Q 039302 390 SSA----------DNQLTIWDLS 402 (479)
Q Consensus 390 ~s~----------Dg~I~iwdl~ 402 (479)
... .+.|..+|..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT
T ss_pred ecCcccccccCCCccEEEEECCC
Confidence 544 4567777753
No 232
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.39 E-value=7.8e-05 Score=78.43 Aligned_cols=156 Identities=13% Similarity=0.136 Sum_probs=100.3
Q ss_pred EEEeCCCCCCeEEEEeCCC-------------------eEEEEecCCCCc-cccCCCCcccC-------CCcEEEEEECC
Q 039302 238 AIDWNPVAPGRLVSGDCNS-------------------CIHLWEPASDAT-WNVDPNPFIGH-------AASVEDLQWSP 290 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg-------------------~I~lwd~~~~~~-~~~~~~~~~~h-------~~~V~~l~~sp 290 (479)
.+++.+.+. +|+.+..++ .|..+|..+++. |... ...| .....-+....
T Consensus 247 ~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~---~~~~d~wd~~~~~~p~l~~~~~ 322 (677)
T 1kb0_A 247 SMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQ---ETPGDNWDYTSTQPMILADIKI 322 (677)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE---SSTTCCSCCCCCSCCEEEEEEE
T ss_pred ceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEe---cCCCcccccccCCCcEEEeccc
Confidence 567778775 888777664 599999988654 2211 1111 11122223333
Q ss_pred CCC--cEEEEEeCCCcEEEEEcCCCCceeeEEecCC-----------CCE------------------------EEEEEc
Q 039302 291 TES--DVFASCSVDGNIAIWDTRVGKSALMSFKAHN-----------ADV------------------------NVISWN 333 (479)
Q Consensus 291 ~~~--~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~-----------~~v------------------------~~l~~~ 333 (479)
+++ ..++.++.+|.|+++|.++++ .+..+.... ..+ ..++++
T Consensus 323 dG~~~~~l~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d 401 (677)
T 1kb0_A 323 AGKPRKVILHAPKNGFFFVLDRTNGK-FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN 401 (677)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE
T ss_pred CCcEeeEEEEECCCCEEEEEECCCCC-EeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEc
Confidence 552 378999999999999999986 333332110 011 146888
Q ss_pred CCCCcEEEEEeC-------------------------------------------CCeEEEEeCCCCCCCCceEEEeecC
Q 039302 334 RLASCLLASGSD-------------------------------------------DGTFSIHDLRLLKGGDSVVAHFEYH 370 (479)
Q Consensus 334 p~~~~~l~sgs~-------------------------------------------dg~i~iwDlr~~~~~~~~~~~~~~h 370 (479)
|+. .++++... .|.|..||+.+++ .+-.+..
T Consensus 402 p~~-~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~----~~W~~~~- 475 (677)
T 1kb0_A 402 PQT-GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK----AAWSVEH- 475 (677)
T ss_dssp TTT-TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE----EEEEEEE-
T ss_pred CCC-CEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc----EEeecCC-
Confidence 887 55555432 2789999999987 5666553
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 371 KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 371 ~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..++....+...+ .+++.++.|+.|++||+.+++
T Consensus 476 ~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~ 509 (677)
T 1kb0_A 476 VSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGE 509 (677)
T ss_dssp SSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred CCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCc
Confidence 3445555566545 677888999999999999884
No 233
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.38 E-value=0.00012 Score=66.96 Aligned_cols=207 Identities=11% Similarity=0.072 Sum_probs=131.2
Q ss_pred CcEEecCCCC--ceEEEEeCCCCCCeEEEEeC--CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe
Q 039302 225 PLVKFGGHKD--EGYAIDWNPVAPGRLVSGDC--NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS 300 (479)
Q Consensus 225 ~~~~~~~h~~--~v~~l~~s~~~~~~l~sg~~--dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s 300 (479)
.+.++ .|.. ....|+|++++. ++++.+. ++.|++.|+.+++.... ..+.. ......+++. +..++++.-
T Consensus 11 vv~~~-p~~~~~f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~v~~~--i~l~~-~~fgeGi~~~--g~~lyv~t~ 83 (266)
T 2iwa_A 11 VLNEF-PHDPYAFTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGKVENI--HKMDD-SYFGEGLTLL--NEKLYQVVW 83 (266)
T ss_dssp EEEEE-ECCTTCCEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCCEEEE--EECCT-TCCEEEEEEE--TTEEEEEET
T ss_pred EEEEE-ECCCCCCcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCCEEEE--EecCC-CcceEEEEEe--CCEEEEEEe
Confidence 34445 3443 357999998853 4444332 57999999988765331 11112 1233456665 444777777
Q ss_pred CCCcEEEEEcCCCCceeeEEecC-CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC--C---CCe
Q 039302 301 VDGNIAIWDTRVGKSALMSFKAH-NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH--K---HPV 374 (479)
Q Consensus 301 ~dg~I~iwD~~~~~~~~~~~~~h-~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h--~---~~I 374 (479)
.++.+.++|..+.+ .+..+... ... ..+++++..++++- .++.|.++|..+.+ .+..+..- . ..+
T Consensus 84 ~~~~v~viD~~t~~-v~~~i~~g~~~g---~glt~Dg~~l~vs~-gs~~l~viD~~t~~----v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 84 LKNIGFIYDRRTLS-NIKNFTHQMKDG---WGLATDGKILYGSD-GTSILYEIDPHTFK----LIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp TCSEEEEEETTTTE-EEEEEECCSSSC---CEEEECSSSEEEEC-SSSEEEEECTTTCC----EEEEEECEETTEECCCE
T ss_pred cCCEEEEEECCCCc-EEEEEECCCCCe---EEEEECCCEEEEEC-CCCeEEEEECCCCc----EEEEEEECCCCcccccc
Confidence 89999999999875 55555432 222 23445664566554 68899999999887 56665431 1 236
Q ss_pred EEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-----------cCCCCeee
Q 039302 375 TSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-----------QGQKDLKE 443 (479)
Q Consensus 375 ~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-----------~g~~~V~~ 443 (479)
+.+.|. ++.+++....++.|.+.|..+.+.. ..+... ......+.
T Consensus 155 nele~~--dg~lyvn~~~~~~V~vID~~tg~V~----------------------~~I~~~g~~~~~~~~~~~~~~v~nG 210 (266)
T 2iwa_A 155 NELEYI--NGEVWANIWQTDCIARISAKDGTLL----------------------GWILLPNLRKKLIDEGFRDIDVLNG 210 (266)
T ss_dssp EEEEEE--TTEEEEEETTSSEEEEEETTTCCEE----------------------EEEECHHHHHHHHHTTCTTCCCEEE
T ss_pred eeEEEE--CCEEEEecCCCCeEEEEECCCCcEE----------------------EEEECCCcccccccccccccCceEE
Confidence 788888 3466666667899999999887521 111110 00124689
Q ss_pred EEEeCCCCcEEEEEcCCC-ceEEeeeccC
Q 039302 444 LHWHTQVPGMIVSTAADG-FNILMPSNIQ 471 (479)
Q Consensus 444 v~w~p~~~~ll~s~~~dg-i~iw~~~~~~ 471 (479)
++|+|.+..+++++.... +.+.++....
T Consensus 211 Ia~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 211 IAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 999999988888887776 7777776553
No 234
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.37 E-value=3.9e-05 Score=69.56 Aligned_cols=190 Identities=11% Similarity=0.058 Sum_probs=119.8
Q ss_pred EEEecCCcce--eEEEEecCCCcEEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEE
Q 039302 163 LRKVAHQGCV--NRIRAMSQNPHICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYA 238 (479)
Q Consensus 163 ~~~~~H~~~V--~~v~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 238 (479)
++..+|...- ..+.|+ ++ .+..+.+.+| .|+++|+.+ ++.+..+... ...+.
T Consensus 34 v~~~phd~~~ftqGL~~~-~~-~LyestG~~g~S~v~~vD~~T---------------------gkv~~~~~l~-~~~Fg 89 (262)
T 3nol_A 34 VHSYPHDTKAFTEGFFYR-NG-YFYESTGLNGRSSIRKVDIES---------------------GKTLQQIELG-KRYFG 89 (262)
T ss_dssp EEEEECCTTCEEEEEEEE-TT-EEEEEEEETTEEEEEEECTTT---------------------CCEEEEEECC-TTCCE
T ss_pred EEEecCCCCcccceEEEE-CC-EEEEECCCCCCceEEEEECCC---------------------CcEEEEEecC-Cccce
Confidence 4566887655 778888 55 6777777766 899999987 4555555432 23333
Q ss_pred EEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceee
Q 039302 239 IDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALM 318 (479)
Q Consensus 239 l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~ 318 (479)
....+.+....+..-.++.+.++|..+.+.... ..+.++. ..++ +++..++++- .++.|.++|..+.+ .+.
T Consensus 90 eGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~t--i~~~~eG---~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~-v~~ 160 (262)
T 3nol_A 90 EGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRS--FNYDGEG---WGLT--HNDQYLIMSD-GTPVLRFLDPESLT-PVR 160 (262)
T ss_dssp EEEEEETTEEEEEESSSSEEEEEETTTCCEEEE--EECSSCC---CCEE--ECSSCEEECC-SSSEEEEECTTTCS-EEE
T ss_pred eEEEEeCCEEEEEEeeCCEEEEEECccCcEEEE--EECCCCc---eEEe--cCCCEEEEEC-CCCeEEEEcCCCCe-EEE
Confidence 222233442444445688999999988655322 1121211 2333 4566455554 47889999999875 444
Q ss_pred EEecC--C---CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------------CCCeEEEEEeC
Q 039302 319 SFKAH--N---ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------------KHPVTSIEWSP 381 (479)
Q Consensus 319 ~~~~h--~---~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------------~~~I~~v~~sp 381 (479)
++... . ..+|-+.|. ++ .+++..-.++.|.+.|.++++ .+..+... ....+.|+|+|
T Consensus 161 ~I~V~~~g~~~~~lNELe~~-~G-~lyan~w~~~~I~vIDp~tG~----V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp 234 (262)
T 3nol_A 161 TITVTAHGEELPELNELEWV-DG-EIFANVWQTNKIVRIDPETGK----VTGIIDLNGILAEAGPLPSPIDVLNGIAWDK 234 (262)
T ss_dssp EEECEETTEECCCEEEEEEE-TT-EEEEEETTSSEEEEECTTTCB----EEEEEECTTGGGGSCSCCSSCCCEEEEEEET
T ss_pred EEEeccCCccccccceeEEE-CC-EEEEEEccCCeEEEEECCCCc----EEEEEECCcCccccccccCcCCceEEEEEcC
Confidence 44321 1 346778887 55 677777678899999999988 66666532 13568999999
Q ss_pred CCCCEEEEEe
Q 039302 382 HEGSTLAVSS 391 (479)
Q Consensus 382 ~~~~~las~s 391 (479)
....++++|-
T Consensus 235 ~~~~lfVTGK 244 (262)
T 3nol_A 235 EHHRLFVTGK 244 (262)
T ss_dssp TTTEEEEEET
T ss_pred CCCEEEEECC
Confidence 7756666653
No 235
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.36 E-value=8.2e-05 Score=67.49 Aligned_cols=189 Identities=10% Similarity=0.022 Sum_probs=122.4
Q ss_pred EEEecCCcce--eEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEE
Q 039302 163 LRKVAHQGCV--NRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAID 240 (479)
Q Consensus 163 ~~~~~H~~~V--~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 240 (479)
+..++|...- ..+.|.. ..+..+.+.+|.|+++|+.+ ++.+..+-....-.-.++
T Consensus 46 v~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~T---------------------gkv~~~~l~~~~FgeGit 102 (268)
T 3nok_A 46 IREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLES---------------------AQPVWMERLGNIFAEGLA 102 (268)
T ss_dssp EEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSC---------------------SSCSEEEECTTCCEEEEE
T ss_pred EEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCC---------------------CcEEeEECCCCcceeEEE
Confidence 4566787655 5777773 47888889999999999987 455555411111223355
Q ss_pred eCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE
Q 039302 241 WNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF 320 (479)
Q Consensus 241 ~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~ 320 (479)
+. +....+..-.++.+.+||..+.+.... ..+.+. -..++ +++. .|+.+..++.|.++|..+.+ .+.++
T Consensus 103 ~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t--i~~~~e---GwGLt--~Dg~-~L~vSdGs~~l~~iDp~T~~-v~~~I 171 (268)
T 3nok_A 103 SD--GERLYQLTWTEGLLFTWSGMPPQRERT--TRYSGE---GWGLC--YWNG-KLVRSDGGTMLTFHEPDGFA-LVGAV 171 (268)
T ss_dssp EC--SSCEEEEESSSCEEEEEETTTTEEEEE--EECSSC---CCCEE--EETT-EEEEECSSSEEEEECTTTCC-EEEEE
T ss_pred Ee--CCEEEEEEccCCEEEEEECCcCcEEEE--EeCCCc---eeEEe--cCCC-EEEEECCCCEEEEEcCCCCe-EEEEE
Confidence 54 432555566788999999987654322 112222 12344 4566 45555568999999999875 44444
Q ss_pred ec--CC---CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------------CCCeEEEEEeCC
Q 039302 321 KA--HN---ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------------KHPVTSIEWSPH 382 (479)
Q Consensus 321 ~~--h~---~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------------~~~I~~v~~sp~ 382 (479)
.. +. ..++-+.|. ++ .+++..-.+..|.+.|.++++ .+..+... ..-.+.|+|+|.
T Consensus 172 ~V~~~g~~v~~lNeLe~~-dG-~lyanvw~s~~I~vIDp~TG~----V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~ 245 (268)
T 3nok_A 172 QVKLRGQPVELINELECA-NG-VIYANIWHSSDVLEIDPATGT----VVGVIDASALTRAVAGQVTNPEAVLNGIAVEPG 245 (268)
T ss_dssp ECEETTEECCCEEEEEEE-TT-EEEEEETTCSEEEEECTTTCB----EEEEEECHHHHHHHTTTCCCTTCCEEEEEECTT
T ss_pred EeCCCCcccccccccEEe-CC-EEEEEECCCCeEEEEeCCCCc----EEEEEECCCCcccccccccCcCCceEEEEEcCC
Confidence 32 21 245778887 55 677766678899999999988 66665431 135689999998
Q ss_pred CCCEEEEEe
Q 039302 383 EGSTLAVSS 391 (479)
Q Consensus 383 ~~~~las~s 391 (479)
...+|+||-
T Consensus 246 ~~rlfVTGK 254 (268)
T 3nok_A 246 SGRIFMTGK 254 (268)
T ss_dssp TCCEEEEET
T ss_pred CCEEEEeCC
Confidence 777777774
No 236
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.34 E-value=2.8e-07 Score=89.79 Aligned_cols=166 Identities=13% Similarity=0.036 Sum_probs=82.2
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCc-eE-EEEeCCCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDE-GY-AIDWNPVAPG 247 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~-~l~~s~~~~~ 247 (479)
+.+.+..+..++ .++++++.||.|+.||..+ ++.+..+..+... +. +..+. .+ +
T Consensus 38 ~~~~s~p~~~~g-~~~v~~s~dg~l~a~d~~t---------------------G~~~w~~~~~~~~~~~~sp~~~-~~-~ 93 (369)
T 2hz6_A 38 DPVLQVPTHVEE-PAFLPDPNDGSLYTLGSKN---------------------NEGLTKLPFTIPELVQASPCRS-SD-G 93 (369)
T ss_dssp CCSCCCC------CCEEECTTTCCEEEC--------------------------CCSEECSCCHHHHHTTCSCC------
T ss_pred CCceecceEcCC-CEEEEeCCCCEEEEEECCC---------------------CceeeeeeccCccccccCceEe-cC-C
Confidence 455555555666 5666778999999999876 3333333322110 10 00011 23 3
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
.|++|+.++.|+.||..+++... .+..+. ...++|.+. .+++++.|+.|+.||.++++ .+..+..+. .
T Consensus 94 ~v~~g~~dg~v~a~D~~tG~~~w----~~~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~-~~W~~~~~~--~ 161 (369)
T 2hz6_A 94 ILYMGKKQDIWYVIDLLTGEKQQ----TLSSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRE-LRWNATYFD--Y 161 (369)
T ss_dssp -CCCCEEEEEEEEECCC-------------------------------EEEEEEEEEEECCCSSSSS-CCCEEEEEE--E
T ss_pred EEEEEeCCCEEEEEECCCCcEEE----EecCCC----cccccccCC-EEEEEecCCEEEEEECCCCC-EEEeEeccc--c
Confidence 78888889999999998865421 122222 234566666 78888899999999999886 333332111 1
Q ss_pred EEEEEcCCC--CcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEE
Q 039302 328 NVISWNRLA--SCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTS 376 (479)
Q Consensus 328 ~~l~~~p~~--~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~ 376 (479)
....+..+. ...+++++.+|.|+.||.++++ .+..+.. ..++..
T Consensus 162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~----~~W~~~~-~~pv~~ 207 (369)
T 2hz6_A 162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD----VLWIQNY-ASPVVA 207 (369)
T ss_dssp CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC----EEEEEEC-SSCEEE
T ss_pred cCccccCCccccceEEEECCCCEEEEEECCCCc----EEEEecC-CCceEE
Confidence 222333321 1346678899999999999887 5666553 445443
No 237
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.33 E-value=0.00013 Score=77.03 Aligned_cols=159 Identities=15% Similarity=0.147 Sum_probs=98.7
Q ss_pred EEEeCCCCCCeEEEEeCCCe-------------------EEEEecCCCCc-cccCCCCcc----cCCCcE--EEEEECCC
Q 039302 238 AIDWNPVAPGRLVSGDCNSC-------------------IHLWEPASDAT-WNVDPNPFI----GHAASV--EDLQWSPT 291 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~-------------------I~lwd~~~~~~-~~~~~~~~~----~h~~~V--~~l~~sp~ 291 (479)
.+++.|... +++.+..++. |..||..+++. |........ ....++ .++.+.-.
T Consensus 239 ~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~ 317 (689)
T 1yiq_A 239 SFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGK 317 (689)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred ceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCc
Confidence 567778775 8888887764 99999988765 221111000 011222 23333211
Q ss_pred CCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC----------------------------C-----------CEEEEEE
Q 039302 292 ESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN----------------------------A-----------DVNVISW 332 (479)
Q Consensus 292 ~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~----------------------------~-----------~v~~l~~ 332 (479)
....++.++.+|.|+++|.++++ .+....... . .-..++|
T Consensus 318 ~~~~v~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~ 396 (689)
T 1yiq_A 318 PRKVLMQAPKNGFFYVIDRATGE-LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSY 396 (689)
T ss_dssp EEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEE
T ss_pred EEEEEEEECCCCeEEEEECCCCC-EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceE
Confidence 11368889999999999999986 332111000 0 0112678
Q ss_pred cCCCCcEEEEEeC---------------------------------------------CCeEEEEeCCCCCCCCceEEEe
Q 039302 333 NRLASCLLASGSD---------------------------------------------DGTFSIHDLRLLKGGDSVVAHF 367 (479)
Q Consensus 333 ~p~~~~~l~sgs~---------------------------------------------dg~i~iwDlr~~~~~~~~~~~~ 367 (479)
+|.. .+|+++.. +|.|..||+.+++ .+-.+
T Consensus 397 dp~~-~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~----~~W~~ 471 (689)
T 1yiq_A 397 NPDT-GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQ----AAWEV 471 (689)
T ss_dssp ETTT-TEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTE----EEEEE
T ss_pred CCCC-CEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCC----eEeEc
Confidence 8887 55555422 3789999999988 66666
Q ss_pred ecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 368 EYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 368 ~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..+. ++....+...+ .++++++.|+.|+.||.++++
T Consensus 472 ~~~~-~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 472 PYVT-IFNGGTLSTAG-NLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp EESS-SCCCCEEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred cCCC-CccCccceECC-CEEEEECCCCcEEEEECCCCc
Confidence 6543 33333455534 788889999999999999984
No 238
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.33 E-value=0.00086 Score=64.37 Aligned_cols=161 Identities=8% Similarity=-0.051 Sum_probs=108.4
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
....+++|.+....++++-...+.|..+++.......+ ..........+++.+.+.+++++-...+.|.+.++...
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~----~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 148 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV----VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA 148 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE----EeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC
Confidence 45789999987652444445678899999876432211 11112345788998877657777777889999998765
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~las~s 391 (479)
. ....+...-...+.|+++|.++.++.+-... +.|..+++.... ...+ ...-...+.|+|+|.++.++.+-+
T Consensus 149 ~-~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~-----~~~~~~~~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 149 H-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-----RRIIADTHLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp S-CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-----CEESCCSSCSCEEEEEEETTTTEEEEEET
T ss_pred c-eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC-----cEEEEECCCCCcceEEEeCCCCEEEEEEC
Confidence 3 2222233345678999999775777776666 889999886543 2222 222345689999997767777777
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
..+.|..+++...
T Consensus 223 ~~~~I~~~~~dG~ 235 (349)
T 3v64_C 223 KHHVIERANLDGS 235 (349)
T ss_dssp TTTEEEEEETTSC
T ss_pred CCCEEEEEeCCCC
Confidence 7889999998653
No 239
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.32 E-value=0.00046 Score=64.86 Aligned_cols=237 Identities=8% Similarity=0.049 Sum_probs=139.1
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNP 243 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~ 243 (479)
..+.-......++|.+++ .++++-...+.|..||.... ....+. ......++++.+
T Consensus 26 ~~~p~~~~pegia~~~~g-~lyv~d~~~~~I~~~d~~g~----------------------~~~~~~-~~~~p~gia~~~ 81 (306)
T 2p4o_A 26 TSFPVNTFLENLASAPDG-TIFVTNHEVGEIVSITPDGN----------------------QQIHAT-VEGKVSGLAFTS 81 (306)
T ss_dssp EEECTTCCEEEEEECTTS-CEEEEETTTTEEEEECTTCC----------------------EEEEEE-CSSEEEEEEECT
T ss_pred EeCCCCCCcceEEECCCC-CEEEEeCCCCeEEEECCCCc----------------------eEEEEe-CCCCceeEEEcC
Confidence 334334678899999988 57777678899999987651 111121 224688999999
Q ss_pred CCCCeEEEEeC-CC-eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe
Q 039302 244 VAPGRLVSGDC-NS-CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK 321 (479)
Q Consensus 244 ~~~~~l~sg~~-dg-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~ 321 (479)
++. ++++... ++ .|..++..++..... ... ........++..+.+. .+++-..++.|..+|...+...+....
T Consensus 82 dG~-l~vad~~~~~~~v~~~d~~~g~~~~~--~~~-~~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~ 156 (306)
T 2p4o_A 82 NGD-LVATGWNADSIPVVSLVKSDGTVETL--LTL-PDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEH 156 (306)
T ss_dssp TSC-EEEEEECTTSCEEEEEECTTSCEEEE--EEC-TTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCc-EEEEeccCCcceEEEEcCCCCeEEEE--EeC-CCccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEEC
Confidence 986 5555433 22 466677655433111 001 1122334555555443 556555688999999865421111100
Q ss_pred ---------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC-CCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 322 ---------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRL-LKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 322 ---------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~-~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
..-...+.| ++++..++++-...+.|.+||+.. +.. .....+.. ......+++++++ +++++..
T Consensus 157 ~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~--~~~~~~~~-~~~P~gi~vd~dG-~l~va~~ 230 (306)
T 2p4o_A 157 PMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKP--GEPEIFVE-QTNIDDFAFDVEG-NLYGATH 230 (306)
T ss_dssp GGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCB--CCCEEEEE-SCCCSSEEEBTTC-CEEEECB
T ss_pred CccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCC--CccEEEec-cCCCCCeEECCCC-CEEEEeC
Confidence 111245666 777756777777888999999874 221 01122211 1345678999965 7777777
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEE-eecCCCCeeeEEEe---CCCCcEEEEEcC
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLF-IHQGQKDLKELHWH---TQVPGMIVSTAA 459 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~-~h~g~~~V~~v~w~---p~~~~ll~s~~~ 459 (479)
..+.|.+++.. +.. ..+. ...+-..+++++|. |++..|+++.+.
T Consensus 231 ~~~~V~~~~~~-G~~-----------------------~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 231 IYNSVVRIAPD-RST-----------------------TIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp TTCCEEEECTT-CCE-----------------------EEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCCeEEEECCC-CCE-----------------------EEEeecccccCCceEEEEecccCCCCEEEEECCC
Confidence 78899999864 210 1111 11222458999998 787777777664
No 240
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.32 E-value=0.00059 Score=66.49 Aligned_cols=163 Identities=8% Similarity=-0.066 Sum_probs=108.2
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
.....+++|.+....++++-...+.|..+++.......+ +.........+++.+.+.+++++-...+.|.+.++..
T Consensus 115 ~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~----~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg 190 (386)
T 3v65_B 115 LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV----VSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDG 190 (386)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE----ECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTS
T ss_pred CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE----EeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCC
Confidence 346789999987652444545678899999876432111 1111234567888887765777777788899988875
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
.. ....+...-...+.|+++|.++.++++-... +.|..+++.... ........-...+.|+|+|.++.++++-+
T Consensus 191 ~~-~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 191 AH-RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG----RRIIADTHLFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp CS-CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSCEEEEEEEGGGTEEEEEET
T ss_pred Cc-eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC----cEEEEECCCCCeeeEEEeCCCCEEEEEEC
Confidence 43 2222333335679999999775777776666 789998886543 22222233445789999987767777777
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
..+.|..+++...
T Consensus 266 ~~~~I~~~d~dG~ 278 (386)
T 3v65_B 266 KHHVIERANLDGS 278 (386)
T ss_dssp TTTEEEEECTTSC
T ss_pred CCCEEEEEeCCCC
Confidence 7888999998643
No 241
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.30 E-value=7.4e-05 Score=78.77 Aligned_cols=152 Identities=13% Similarity=0.246 Sum_probs=87.9
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC--CCceEEEEeCC--CCCCeEEEEe-----
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH--KDEGYAIDWNP--VAPGRLVSGD----- 253 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~--~~~~~l~sg~----- 253 (479)
..|+.++.+|.|..+|..+ ++.+..+... ......+..+| .+ +.++.++
T Consensus 122 g~v~v~~~dg~l~AlDa~T---------------------G~~~W~~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~ 179 (689)
T 1yiq_A 122 GKVYVGVLDGRLEAIDAKT---------------------GQRAWSVDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEF 179 (689)
T ss_dssp TEEEEECTTSEEEEEETTT---------------------CCEEEEEECCSCTTSCCBCCSCCEEET-TEEEECCBCTTT
T ss_pred CEEEEEccCCEEEEEECCC---------------------CCEeeeecCcCCCCCCccccCCcEEEC-CEEEEEeCCCcc
Confidence 3566678899999999977 3444333321 11111111112 02 2555554
Q ss_pred -CCCeEEEEecCCCCc-cccCCCC---cc-----------------------cCCCcEEEEEECCCCCcEEEEEeCCCc-
Q 039302 254 -CNSCIHLWEPASDAT-WNVDPNP---FI-----------------------GHAASVEDLQWSPTESDVFASCSVDGN- 304 (479)
Q Consensus 254 -~dg~I~lwd~~~~~~-~~~~~~~---~~-----------------------~h~~~V~~l~~sp~~~~~l~s~s~dg~- 304 (479)
.+|.|+.||..+++. |...... .. ++......++++|... +++.++.++.
T Consensus 180 ~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~ 258 (689)
T 1yiq_A 180 GVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSL 258 (689)
T ss_dssp CCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEES
T ss_pred CCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCc
Confidence 368999999988764 3221100 00 1111123578888877 7888877763
Q ss_pred ------------------EEEEEcCCCCceeeEEec--CC-------CCEEEEEEcCCCC--cEEEEEeCCCeEEEEeCC
Q 039302 305 ------------------IAIWDTRVGKSALMSFKA--HN-------ADVNVISWNRLAS--CLLASGSDDGTFSIHDLR 355 (479)
Q Consensus 305 ------------------I~iwD~~~~~~~~~~~~~--h~-------~~v~~l~~~p~~~--~~l~sgs~dg~i~iwDlr 355 (479)
|..+|.++++ .+-.+.. |. ..+.......++. ..++.++.+|.++++|.+
T Consensus 259 w~~~~~~~~~gd~~y~~~v~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~ 337 (689)
T 1yiq_A 259 WDPKWRSQAKGDNLFLSSIVAVNADTGE-YVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRA 337 (689)
T ss_dssp SCHHHHHTTCSCCTTTTEEEEEETTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETT
T ss_pred cccCCCCCCCCCceeeeeEEEEEccCCc-eeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECC
Confidence 9999999986 4444432 21 1222222222341 378899999999999999
Q ss_pred CCC
Q 039302 356 LLK 358 (479)
Q Consensus 356 ~~~ 358 (479)
+++
T Consensus 338 tG~ 340 (689)
T 1yiq_A 338 TGE 340 (689)
T ss_dssp TCC
T ss_pred CCC
Confidence 987
No 242
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.30 E-value=4.6e-05 Score=72.07 Aligned_cols=174 Identities=14% Similarity=0.018 Sum_probs=108.9
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEec
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEP 263 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~ 263 (479)
.+..++.++.|..+|... +....+..+...+.++...+++ .|..|+.++.|..+|.
T Consensus 109 ~l~v~t~~~~l~~~d~~g----------------------~~~~~~~~~~~~~~~~~~~~~g--~l~vgt~~~~l~~~d~ 164 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTDG----------------------TEKWRFKTKKAIYATPIVSEDG--TIYVGSNDNYLYAINP 164 (330)
T ss_dssp EEEEECTTSEEEEECTTS----------------------CEEEEEECSSCCCSCCEECTTS--CEEEECTTSEEEEECT
T ss_pred EEEEEecCCEEEEEcCCC----------------------CEEEEEcCCCceeeeeEEcCCC--EEEEEcCCCEEEEECC
Confidence 455667888999998762 1122232333344555555554 5777888899999998
Q ss_pred CCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEE
Q 039302 264 ASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASG 343 (479)
Q Consensus 264 ~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sg 343 (479)
. +.... .+......+.++...+++. ++ .++ +.|..+| .++. ....+......+.++...+++ . |..+
T Consensus 165 ~-g~~~~----~~~~~~~~~~~~~~d~~g~-l~-v~t--~~l~~~d-~~g~-~~~~~~~~~~~~~~~~~~~~g-~-l~v~ 231 (330)
T 3hxj_A 165 D-GTEKW----RFKTNDAITSAASIGKDGT-IY-FGS--DKVYAIN-PDGT-EKWNFYAGYWTVTRPAISEDG-T-IYVT 231 (330)
T ss_dssp T-SCEEE----EEECSSCCCSCCEECTTCC-EE-EES--SSEEEEC-TTSC-EEEEECCSSCCCSCCEECTTS-C-EEEE
T ss_pred C-CCEeE----EEecCCCceeeeEEcCCCE-EE-EEe--CEEEEEC-CCCc-EEEEEccCCcceeceEECCCC-e-EEEE
Confidence 7 43311 1112234566677777776 44 444 8899999 5554 444454455668888888876 4 5556
Q ss_pred eCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 344 SDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 344 s~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+.++.|..+|. ++. .+..+......+.++...+ + ..|..++.++.|..+|.
T Consensus 232 t~~~gl~~~~~-~g~----~~~~~~~~~~~~~~~~~~~-~-g~l~v~t~~ggl~~~d~ 282 (330)
T 3hxj_A 232 SLDGHLYAINP-DGT----EKWRFKTGKRIESSPVIGN-T-DTIYFGSYDGHLYAINP 282 (330)
T ss_dssp ETTTEEEEECT-TSC----EEEEEECSSCCCSCCEECT-T-SCEEEECTTCEEEEECT
T ss_pred cCCCeEEEECC-CCC----EeEEeeCCCCccccceEcC-C-CeEEEecCCCCEEEECC
Confidence 77788888874 333 4555554444455566654 3 45677788888999985
No 243
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.28 E-value=0.0017 Score=62.28 Aligned_cols=205 Identities=7% Similarity=-0.111 Sum_probs=132.3
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
.....+..++|.+.+..++.+-...+.|+.+++... .....+........+|++.+.+.
T Consensus 70 ~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~---------------------~~~~~~~~~~~~p~glavd~~~g 128 (349)
T 3v64_C 70 NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS---------------------NVEEVVSTGLESPGGLAVDWVHD 128 (349)
T ss_dssp CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECSSCSCCCEEEEETTTT
T ss_pred cCCCceEEEEEeccccEEEEEeccCCceEEEecCCC---------------------CceEEEeCCCCCccEEEEecCCC
Confidence 334558899999877678878777889999988761 11122222223445677776554
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEE-ecCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIAIWDTRVGKSALMSF-KAHN 324 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~-~~h~ 324 (479)
.++++-...+.|.+.++........ ........+.|+++|.+..++.+-... +.|..+++.... ...+ ...-
T Consensus 129 ~ly~~d~~~~~I~~~~~dG~~~~~l----~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--~~~~~~~~~ 202 (349)
T 3v64_C 129 KLYWTDSGTSRIEVANLDGAHRKVL----LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--RRIIADTHL 202 (349)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEE----ECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEESCCSSC
T ss_pred eEEEEcCCCCeEEEEcCCCCceEEE----EeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--cEEEEECCC
Confidence 2455555678999999865322111 112234578999999777567666655 789888887543 2222 2233
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
...+.|+|+|.+..++++-+..+.|..+|+.... ....+.........|++. .+.++.+-...+.|..++...+
T Consensus 203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~----~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 203 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH----RKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc----eEEEEeCCCCCceEEEEE--CCEEEEecCCCCeEEEEEccCC
Confidence 4578999998776777777778899999987533 222233334456778884 3477777777888988885444
No 244
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.27 E-value=0.00095 Score=65.04 Aligned_cols=205 Identities=7% Similarity=-0.110 Sum_probs=131.5
Q ss_pred CCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCC
Q 039302 168 HQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPG 247 (479)
Q Consensus 168 H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~ 247 (479)
....+..++|.+.+..++.+-...+.|+.+++... .....+.........|++.+.+..
T Consensus 114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~---------------------~~~~~~~~~~~~p~glavd~~~g~ 172 (386)
T 3v65_B 114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS---------------------NVEEVVSTGLESPGGLAVDWVHDK 172 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------CEEEEECSSCSCCCCEEEETTTTE
T ss_pred CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC---------------------CcEEEEeCCCCCccEEEEEeCCCe
Confidence 34568899999877678888777889999998761 111112222223456777765542
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEEecCCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
++++-...+.|.+.++.......+ +.........|+++|.+..++.+-... +.|..+++.... ........-..
T Consensus 173 lY~~d~~~~~I~~~~~dg~~~~~l----~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~~~~ 247 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDGAHRKVL----LWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG-RRIIADTHLFW 247 (386)
T ss_dssp EEEEETTTTEEEECBTTSCSCEEE----ECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSC
T ss_pred EEEEcCCCCeEEEEeCCCCceEEe----ecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC-cEEEEECCCCC
Confidence 455555677888888764322111 122234678999999877566665555 788888887643 22222233345
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.+.|+|+|.+..++++-+..+.|..+|+.... ....+.........|++. .+.++.+-...+.|..++...+
T Consensus 248 PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~----~~~~~~~~~~~P~giav~--~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 248 PNGLTIDYAGRRMYWVDAKHHVIERANLDGSH----RKAVISQGLPHPFAITVF--EDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEECTTSCS----CEEEECSSCSSEEEEEEE--TTEEEEEETTTTEEEEEETTTC
T ss_pred eeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe----eEEEEECCCCCceEEEEE--CCEEEEeeCCCCeEEEEECCCC
Confidence 78999998776777887788899999987533 222233334456778884 3477777777889998885444
No 245
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.27 E-value=0.0014 Score=61.83 Aligned_cols=163 Identities=12% Similarity=0.055 Sum_probs=105.2
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCC---CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASD---ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~---~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
.....+++|.+.+...+++-...+.|..+++... .... ..+...-.....+++.+.+.+++++-...+.|.+++
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~---~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~ 105 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD---TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVAD 105 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE---EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE---EEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEe
Confidence 4467899999876524445555689999998651 1111 011111234578899876665777777789999999
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCCCCceEEEe-ecCCCCeEEEEEeCCCCCEE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKGGDSVVAHF-EYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~~~~~~~~~-~~h~~~I~~v~~sp~~~~~l 387 (479)
+.... ....+.......+.++++|.++.++++.... +.|...++.... ...+ ...-...+.|+|+|.++.++
T Consensus 106 ~~g~~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~-----~~~~~~~~~~~P~gla~d~~~~~lY 179 (316)
T 1ijq_A 106 TKGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-----IYSLVTENIQWPNGITLDLLSGRLY 179 (316)
T ss_dssp TTSSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-----EEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CCCCc-eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-----eEEEEECCCCCceEEEEeccCCEEE
Confidence 87543 2222233345678999999775666666544 788888875332 2222 22334678999999776666
Q ss_pred EEEeCCCcEEEEECCCC
Q 039302 388 AVSSADNQLTIWDLSLE 404 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~ 404 (479)
.+-+..+.|..+|+...
T Consensus 180 ~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 180 WVDSKLHSISSIDVNGG 196 (316)
T ss_dssp EEETTTTEEEEEETTSC
T ss_pred EEECCCCeEEEEecCCC
Confidence 77777889999998743
No 246
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.21 E-value=3.8e-05 Score=77.69 Aligned_cols=201 Identities=8% Similarity=-0.008 Sum_probs=128.2
Q ss_pred eEEEEec-----CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEEEe-C-CC
Q 039302 173 NRIRAMS-----QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAIDW-N-PV 244 (479)
Q Consensus 173 ~~v~~~p-----~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~-s-~~ 244 (479)
.....+. +|..++++...++.|.+.|+.. .+....+.- .......+++ + |+
T Consensus 88 hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t---------------------~~~~~ii~ip~g~~phg~~~~~~p~ 146 (595)
T 1fwx_A 88 HHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDV---------------------MKCDAILEIPNAKGIHGLRPQKWPR 146 (595)
T ss_dssp CCEEEEEETTEEEEEEEEEEETTTTEEEEEETTT---------------------TEEEEEEECSSCCSEEEEEECCSSB
T ss_pred CccccCCCCCCcCCCEEEEEcCCCCEEEEEECCC---------------------ceEeeEEeCCCCCCCcceeeeecCC
Confidence 3345555 7777888888888999999988 344442321 2235778887 4 78
Q ss_pred CCCeEEEEe------------------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC----
Q 039302 245 APGRLVSGD------------------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD---- 302 (479)
Q Consensus 245 ~~~~l~sg~------------------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d---- 302 (479)
+. ++++++ .++.+.+.|..+...... ....+ ....++++|+++..++++...
T Consensus 147 ~~-~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~q--I~Vgg---~pd~~~~spdGk~~~vt~~~se~~~ 220 (595)
T 1fwx_A 147 SN-YVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQ--VLVSG---NLDNCDADYEGKWAFSTSYNSEKGM 220 (595)
T ss_dssp CS-EEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEE--EEESS---CCCCEEECSSSSEEEEEESCTTCCS
T ss_pred Cc-EEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEE--EEeCC---CccceEECCCCCEEEEEecCcccCc
Confidence 77 777663 345788888876433110 11111 234567899988444444222
Q ss_pred ---------------------------------CcEEEEEcCC--CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC
Q 039302 303 ---------------------------------GNIAIWDTRV--GKSALMSFKAHNADVNVISWNRLASCLLASGSDDG 347 (479)
Q Consensus 303 ---------------------------------g~I~iwD~~~--~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg 347 (479)
+.|.+.|.++ ++..+..+.. .....++.++|++..+++++..+.
T Consensus 221 ~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~ 299 (595)
T 1fwx_A 221 TLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSP 299 (595)
T ss_dssp SHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSS
T ss_pred chhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCC
Confidence 2477777776 3211223322 234577899999977778888899
Q ss_pred eEEEEeCCCCCC--------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 348 TFSIHDLRLLKG--------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 348 ~i~iwDlr~~~~--------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
+|.++|+.+.+. ....+.... -......++|+|++ ....+.-.|++|.+||+..
T Consensus 300 ~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 300 TVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp BEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred eEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 999999986520 001233333 24457889999976 7777777899999999865
No 247
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.20 E-value=0.0023 Score=58.09 Aligned_cols=202 Identities=11% Similarity=0.097 Sum_probs=129.2
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe--cCCCCceEEEEeCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF--GGHKDEGYAIDWNPV 244 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~s~~ 244 (479)
+-.+.+..++|+|++..++|+...++.|...|... +.+.++ .+. ...-+|++.++
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g----------------------~v~~~i~l~g~-~D~EGIa~~~~ 80 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNG----------------------DLIRTIPLDFV-KDLETIEYIGD 80 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTC----------------------CEEEEEECSSC-SSEEEEEECST
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCC----------------------CEEEEEecCCC-CChHHeEEeCC
Confidence 55578999999998877888778888888888763 223333 222 45678888877
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCc-cccCCC--Cc--ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC--Ccee
Q 039302 245 APGRLVSGDCNSCIHLWEPASDAT-WNVDPN--PF--IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG--KSAL 317 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~-~~~~~~--~~--~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~--~~~~ 317 (479)
+. ++++.-.++.+.++++..... ...... .+ ...+.....|+|+|.+..+++ +.......||.++.. ...+
T Consensus 81 g~-~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 81 NQ-FVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp TE-EEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEESTTCSSCC
T ss_pred CE-EEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEcccccCCce
Confidence 65 556665678999998866543 111011 11 123556899999999874555 444444455544311 1111
Q ss_pred eEEe-------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCC---------CCeEEEEEeC
Q 039302 318 MSFK-------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHK---------HPVTSIEWSP 381 (479)
Q Consensus 318 ~~~~-------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~---------~~I~~v~~sp 381 (479)
.... .+...+.+++++|..+.+++.......|.++|.... ++..+.-.. ..--.|+|.|
T Consensus 159 ~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-----~~~~~~L~~g~~~l~~~~~qpEGia~d~ 233 (255)
T 3qqz_A 159 HISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-----VIGEMSLTKGSRGLSHNIKQAEGVAMDA 233 (255)
T ss_dssp EEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----EEEEEECSTTGGGCSSCCCSEEEEEECT
T ss_pred eeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-----EEEEEEcCCccCCcccccCCCCeeEECC
Confidence 2111 133467899999998888888888899999997633 344333221 2557899999
Q ss_pred CCCCEEEEEeCCCcEEEEE
Q 039302 382 HEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 382 ~~~~~las~s~Dg~I~iwd 400 (479)
++ +++++ |+-+.++++.
T Consensus 234 ~G-~lyIv-sE~n~~y~f~ 250 (255)
T 3qqz_A 234 SG-NIYIV-SEPNRFYRFT 250 (255)
T ss_dssp TC-CEEEE-ETTTEEEEEE
T ss_pred CC-CEEEE-cCCceEEEEE
Confidence 65 64444 7777666664
No 248
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.20 E-value=0.003 Score=59.58 Aligned_cols=213 Identities=8% Similarity=-0.065 Sum_probs=130.9
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
+..-..+..+.|.+.+..++.+-...+.|+.+++...... ......+...-....+|++.+.+
T Consensus 26 ~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~-----------------~~~~~~~~~~~~~p~glavd~~~ 88 (316)
T 1ijq_A 26 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------SSYDTVISRDIQAPDGLAVDWIH 88 (316)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCCCEEEEETTT
T ss_pred hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC-----------------cccEEEEeCCCCCcCEEEEeecC
Confidence 3445667899999877678888777899999998651000 01111222222344677777655
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEE-ecC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIAIWDTRVGKSALMSF-KAH 323 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~-~~h 323 (479)
..++++-...+.|.+.++........ ..........++++|.+..++.+.... +.|..+++.... ...+ ...
T Consensus 89 ~~ly~~d~~~~~I~~~~~~g~~~~~~----~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~--~~~~~~~~ 162 (316)
T 1ijq_A 89 SNIYWTDSVLGTVSVADTKGVKRKTL----FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--IYSLVTEN 162 (316)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEE----EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC--EEEEECSS
T ss_pred CeEEEEECCCCEEEEEeCCCCceEEE----EECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC--eEEEEECC
Confidence 42455556678999999864322111 111234678999999777566665443 788888886542 2222 223
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
-...+.|+|+++++.++++-+..+.|..+|+..... ..+............|++. ++.++.+-...++|..++...
T Consensus 163 ~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~--~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~~~~~~~ 238 (316)
T 1ijq_A 163 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 238 (316)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETTT
T ss_pred CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCce--EEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEEEEeCCC
Confidence 356789999998767777777788999999874331 1222211123345778885 347777777788999998765
Q ss_pred CC
Q 039302 404 EK 405 (479)
Q Consensus 404 ~~ 405 (479)
+.
T Consensus 239 g~ 240 (316)
T 1ijq_A 239 GS 240 (316)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 249
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.19 E-value=8.1e-05 Score=78.31 Aligned_cols=157 Identities=13% Similarity=0.164 Sum_probs=90.7
Q ss_pred EEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC-CC-ceEEEEeCC--CCCCeEEEEeC-----
Q 039302 184 ICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH-KD-EGYAIDWNP--VAPGRLVSGDC----- 254 (479)
Q Consensus 184 ~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~-~v~~l~~s~--~~~~~l~sg~~----- 254 (479)
.|..++.++.|..+|..+ ++.+..+..+ .. ....+.-.| .+ +.++.++.
T Consensus 130 ~v~v~~~dg~l~alD~~t---------------------G~~~W~~~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~ 187 (677)
T 1kb0_A 130 KVYVGAWDGRLIALDAAT---------------------GKEVWHQNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYG 187 (677)
T ss_dssp EEEEECTTSEEEEEETTT---------------------CCEEEEEETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTC
T ss_pred EEEEEcCCCEEEEEECCC---------------------CCEEeeecCCcCcCcCcccccCcEEEC-CEEEEEecccccC
Confidence 555668899999999987 4444444433 10 000000011 12 25666553
Q ss_pred -CCeEEEEecCCCCc-cccCCCCcc---------------------------cCCCcEEEEEECCCCCcEEEEEeCCC--
Q 039302 255 -NSCIHLWEPASDAT-WNVDPNPFI---------------------------GHAASVEDLQWSPTESDVFASCSVDG-- 303 (479)
Q Consensus 255 -dg~I~lwd~~~~~~-~~~~~~~~~---------------------------~h~~~V~~l~~sp~~~~~l~s~s~dg-- 303 (479)
+|.|+.+|..+++. |......-. +.......++++|.+. +++.++.++
T Consensus 188 ~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~-~vy~~~~~~~~ 266 (677)
T 1kb0_A 188 VRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELN-TMYVGTGNGSP 266 (677)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTT-EEEEECCCEES
T ss_pred CCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCC-EEEEECCCCcc
Confidence 68999999988754 221110000 1111223578888887 677666553
Q ss_pred -----------------cEEEEEcCCCCceeeEEec--CC-------CCEEEEEEcCCCC--cEEEEEeCCCeEEEEeCC
Q 039302 304 -----------------NIAIWDTRVGKSALMSFKA--HN-------ADVNVISWNRLAS--CLLASGSDDGTFSIHDLR 355 (479)
Q Consensus 304 -----------------~I~iwD~~~~~~~~~~~~~--h~-------~~v~~l~~~p~~~--~~l~sgs~dg~i~iwDlr 355 (479)
.|..+|.++++ .+-.+.. |. .....+....++. ..|+.++.+|.|+++|.+
T Consensus 267 w~~~~~~~~~gd~~~~~sv~AlD~~TG~-~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~ 345 (677)
T 1kb0_A 267 WSHKVRSPKGGDNLYLASIVALDPDTGK-YKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRT 345 (677)
T ss_dssp SCHHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETT
T ss_pred ccCCCCCccCCCCeeeEEEEEEECCCCC-EEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECC
Confidence 59999999986 4444432 21 1122233333442 578899999999999999
Q ss_pred CCCCCCceEEEee
Q 039302 356 LLKGGDSVVAHFE 368 (479)
Q Consensus 356 ~~~~~~~~~~~~~ 368 (479)
+++ ++..+.
T Consensus 346 tG~----~l~~~~ 354 (677)
T 1kb0_A 346 NGK----FISAKN 354 (677)
T ss_dssp TCC----EEEEEE
T ss_pred CCC----Eecccc
Confidence 988 555543
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.17 E-value=0.00034 Score=62.85 Aligned_cols=190 Identities=16% Similarity=0.114 Sum_probs=120.1
Q ss_pred EEEecCCcc--eeEEEEecCCCcEEEEEeCCc--eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCC-ceE
Q 039302 163 LRKVAHQGC--VNRIRAMSQNPHICASWADTG--HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKD-EGY 237 (479)
Q Consensus 163 ~~~~~H~~~--V~~v~~~p~~~~~lat~s~dg--~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~ 237 (479)
+...+|... +..+.|++ + .+..+.+..| .|+++|+.+ ++.+..+..... -.-
T Consensus 12 ~~~~phd~~~ftqGL~~~~-~-~LyestG~~g~S~v~~vD~~t---------------------gkv~~~~~l~~~~fge 68 (243)
T 3mbr_X 12 VKRYPHDTTAFTEGLFYLR-G-HLYESTGETGRSSVRKVDLET---------------------GRILQRAEVPPPYFGA 68 (243)
T ss_dssp EEEEECCTTCCEEEEEEET-T-EEEEEECCTTSCEEEEEETTT---------------------CCEEEEEECCTTCCEE
T ss_pred EEEcCCCCccccccEEEEC-C-EEEEECCCCCCceEEEEECCC---------------------CCEEEEEeCCCCccee
Confidence 455688765 45889987 4 6777767754 899999987 455555543222 223
Q ss_pred EEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCcee
Q 039302 238 AIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~ 317 (479)
+++.. +....+..-.++.+.++|..+...... ..+.++ -..++ +++..+++|- .++.|.++|..+.+ .+
T Consensus 69 Gi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~t--i~~~~~---Gwglt--~dg~~L~vSd-gs~~l~~iDp~t~~-~~ 137 (243)
T 3mbr_X 69 GIVAW--RDRLIQLTWRNHEGFVYDLATLTPRAR--FRYPGE---GWALT--SDDSHLYMSD-GTAVIRKLDPDTLQ-QV 137 (243)
T ss_dssp EEEEE--TTEEEEEESSSSEEEEEETTTTEEEEE--EECSSC---CCEEE--ECSSCEEEEC-SSSEEEEECTTTCC-EE
T ss_pred EEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEE--EeCCCC---ceEEe--eCCCEEEEEC-CCCeEEEEeCCCCe-EE
Confidence 33443 332444556788999999987654321 112221 13444 4566455554 58899999999875 44
Q ss_pred eEEecCC-----CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-------------CCCeEEEEE
Q 039302 318 MSFKAHN-----ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-------------KHPVTSIEW 379 (479)
Q Consensus 318 ~~~~~h~-----~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-------------~~~I~~v~~ 379 (479)
.++.... ..++-+.|. ++ .+++..-.+..|.+.|.++++ .+..+... ..-.+.|+|
T Consensus 138 ~~I~V~~~g~~~~~lNeLe~~-~G-~lyanvw~s~~I~vIDp~tG~----V~~~idl~~l~~~~~~~~~~~~~vlNGIA~ 211 (243)
T 3mbr_X 138 GSIKVTAGGRPLDNLNELEWV-NG-ELLANVWLTSRIARIDPASGK----VVAWIDLQALVPDADALTDSTNDVLNGIAF 211 (243)
T ss_dssp EEEECEETTEECCCEEEEEEE-TT-EEEEEETTTTEEEEECTTTCB----EEEEEECGGGSTTTTSCCCTTSSCEEEEEE
T ss_pred EEEEEccCCcccccceeeEEe-CC-EEEEEECCCCeEEEEECCCCC----EEEEEECCcCccccccccCCcCCceEEEEE
Confidence 4443211 356777777 44 666666678899999999988 66665421 135689999
Q ss_pred eCCCCCEEEEEeC
Q 039302 380 SPHEGSTLAVSSA 392 (479)
Q Consensus 380 sp~~~~~las~s~ 392 (479)
+|....+++||-.
T Consensus 212 d~~~~~lfVTGK~ 224 (243)
T 3mbr_X 212 DAEHDRLFVTGKR 224 (243)
T ss_dssp ETTTTEEEEEETT
T ss_pred cCCCCEEEEECCC
Confidence 9977666776643
No 251
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.16 E-value=0.0029 Score=61.89 Aligned_cols=167 Identities=12% Similarity=0.032 Sum_probs=107.4
Q ss_pred CCCceEEEEeCCCCCCeEEEE-eCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEc
Q 039302 232 HKDEGYAIDWNPVAPGRLVSG-DCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDT 310 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg-~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~ 310 (479)
....+.+|+|.+... .|... ...+.|+.+++......................|++.+.+.+++++-...+.|.+.++
T Consensus 110 ~~~~~~~l~~d~~~~-~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~ 188 (400)
T 3p5b_L 110 NLRNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT 188 (400)
T ss_dssp SCSCEEEEEEETTTT-EEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECT
T ss_pred ccCcceEEeeeeccC-ceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeC
Confidence 445788999998765 55444 4567899998865221000001112223467889999866657777778889999998
Q ss_pred CCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 311 RVGKSALMSFKAHNADVNVISWNRLASCLLASGSD-DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 311 ~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~-dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.... ....+.........|+++|.++.++.+-.. .+.|...++.... ........-...+.|+++|.++.++.+
T Consensus 189 ~g~~-~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~----~~~~~~~~l~~P~glavd~~~~~lY~a 263 (400)
T 3p5b_L 189 KGVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWV 263 (400)
T ss_dssp TTCS-EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS----CEEEECSSCSCEEEEEEETTTTEEEEE
T ss_pred CCCc-eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc----cEEEEECCCCceEEEEEEeCCCEEEEE
Confidence 8653 222333344557899999977466666533 4789888887544 222223333567899999977666666
Q ss_pred EeCCCcEEEEECCCC
Q 039302 390 SSADNQLTIWDLSLE 404 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~ 404 (479)
-+..+.|..+|+...
T Consensus 264 D~~~~~I~~~d~dG~ 278 (400)
T 3p5b_L 264 DSKLHSISSIDVNGG 278 (400)
T ss_dssp ETTTTEEEEEETTSC
T ss_pred ECCCCEEEEEeCCCC
Confidence 666789999998654
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.07 E-value=0.00026 Score=64.13 Aligned_cols=203 Identities=13% Similarity=0.078 Sum_probs=120.9
Q ss_pred ceEEEEeCCCCCCeEEEEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
-...|.|+ ++. ++.+.+.+| .|+.+|+.+++.... ..+.. ...-..++.. +..++++.-.++.+.+||..+
T Consensus 44 ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgkv~~~--~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t 116 (262)
T 3nol_A 44 FTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGKTLQQ--IELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRN 116 (262)
T ss_dssp EEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCCEEEE--EECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTT
T ss_pred ccceEEEE-CCE-EEEECCCCCCceEEEEECCCCcEEEE--EecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECcc
Confidence 34788888 454 666666666 999999998765332 11211 1112334443 444677777799999999999
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC--C---CCeEEEEEeCCCCCEE
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH--K---HPVTSIEWSPHEGSTL 387 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h--~---~~I~~v~~sp~~~~~l 387 (479)
.+ .+.++...... ..++ +++..++++- .++.|.++|..+.+ .+.++... . ..++.+.|. ++.++
T Consensus 117 ~~-~~~ti~~~~eG-~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~----v~~~I~V~~~g~~~~~lNELe~~--~G~ly 185 (262)
T 3nol_A 117 LR-QVRSFNYDGEG-WGLT--HNDQYLIMSD-GTPVLRFLDPESLT----PVRTITVTAHGEELPELNELEWV--DGEIF 185 (262)
T ss_dssp CC-EEEEEECSSCC-CCEE--ECSSCEEECC-SSSEEEEECTTTCS----EEEEEECEETTEECCCEEEEEEE--TTEEE
T ss_pred Cc-EEEEEECCCCc-eEEe--cCCCEEEEEC-CCCeEEEEcCCCCe----EEEEEEeccCCccccccceeEEE--CCEEE
Confidence 86 55566533222 2334 4554555554 47889999999887 56665431 2 335568887 44666
Q ss_pred EEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 388 AVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
+..-.++.|.+.|..+++.... .. ...+.+.....+......+.|+|+|....++++|-.-- ++|.+
T Consensus 186 an~w~~~~I~vIDp~tG~V~~~-----------Id-~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp-~~~ev 252 (262)
T 3nol_A 186 ANVWQTNKIVRIDPETGKVTGI-----------ID-LNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWP-KVFEI 252 (262)
T ss_dssp EEETTSSEEEEECTTTCBEEEE-----------EE-CTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCS-EEEEE
T ss_pred EEEccCCeEEEEECCCCcEEEE-----------EE-CCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCC-ceEEE
Confidence 6666788999999988752100 00 00000000001111124789999999887777775543 55544
Q ss_pred e
Q 039302 468 S 468 (479)
Q Consensus 468 ~ 468 (479)
.
T Consensus 253 ~ 253 (262)
T 3nol_A 253 T 253 (262)
T ss_dssp E
T ss_pred E
Confidence 3
No 253
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.07 E-value=4.6e-05 Score=72.10 Aligned_cols=135 Identities=16% Similarity=0.030 Sum_probs=90.5
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
+.|..++.++.|..+|.. +.... .+......+.++...+++. +..++.++.|..+|.. ++ ....+......
T Consensus 108 ~~l~v~t~~~~l~~~d~~-g~~~~----~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~-~~~~~~~~~~~ 178 (330)
T 3hxj_A 108 DILYVTSMDGHLYAINTD-GTEKW----RFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GT-EKWRFKTNDAI 178 (330)
T ss_dssp TEEEEECTTSEEEEECTT-SCEEE----EEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SC-EEEEEECSSCC
T ss_pred CEEEEEecCCEEEEEcCC-CCEEE----EEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CC-EeEEEecCCCc
Confidence 378889889999999987 33311 1112233455566676665 6667778999999998 54 44455545556
Q ss_pred EEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 327 VNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 327 v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
+.++...+++ .++ .++ +.|..+| .++. .+..+......+.++...+++ .|..++.++.|..++.
T Consensus 179 ~~~~~~d~~g-~l~-v~t--~~l~~~d-~~g~----~~~~~~~~~~~~~~~~~~~~g--~l~v~t~~~gl~~~~~ 242 (330)
T 3hxj_A 179 TSAASIGKDG-TIY-FGS--DKVYAIN-PDGT----EKWNFYAGYWTVTRPAISEDG--TIYVTSLDGHLYAINP 242 (330)
T ss_dssp CSCCEECTTC-CEE-EES--SSEEEEC-TTSC----EEEEECCSSCCCSCCEECTTS--CEEEEETTTEEEEECT
T ss_pred eeeeEEcCCC-EEE-EEe--CEEEEEC-CCCc----EEEEEccCCcceeceEECCCC--eEEEEcCCCeEEEECC
Confidence 7777787777 444 444 8899999 6555 556666556678888888743 4555667788888864
No 254
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.06 E-value=0.0062 Score=55.27 Aligned_cols=207 Identities=10% Similarity=0.087 Sum_probs=126.9
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEE
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAI 307 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~i 307 (479)
.+.+-...+.+|+|+|++..++++...++.|...|+. +..... .++.+ ......|++.+++. ++++.-.++.+.+
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~--i~l~g-~~D~EGIa~~~~g~-~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT--IPLDF-VKDLETIEYIGDNQ-FVISDERDYAIYV 95 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE--EECSS-CSSEEEEEECSTTE-EEEEETTTTEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE--EecCC-CCChHHeEEeCCCE-EEEEECCCCcEEE
Confidence 3445556899999999875355557778889999986 443221 12222 25688999998876 6666656788999
Q ss_pred EEcCCCCc--eeeEE------ecCCCCEEEEEEcCCCCcEEEEEeCCC-eEEEEeCCCCCCCCceEEEee-------cCC
Q 039302 308 WDTRVGKS--ALMSF------KAHNADVNVISWNRLASCLLASGSDDG-TFSIHDLRLLKGGDSVVAHFE-------YHK 371 (479)
Q Consensus 308 wD~~~~~~--~~~~~------~~h~~~v~~l~~~p~~~~~l~sgs~dg-~i~iwDlr~~~~~~~~~~~~~-------~h~ 371 (479)
+++..... .+... ...+.....|+|+|.+..++++.-.+. .|..|+-.... ..+..+. .+.
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~---~~l~i~~~~~~~~~~~~ 172 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSS---NELHISKDKALQRQFTL 172 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCS---SCCEEEECHHHHHTCCS
T ss_pred EEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccC---Cceeeecchhhcccccc
Confidence 98876542 11111 123456789999999855555444443 45555511111 0122221 133
Q ss_pred CCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-------CCCeeeE
Q 039302 372 HPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-------QKDLKEL 444 (479)
Q Consensus 372 ~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-------~~~V~~v 444 (479)
..+.+++++|..+.+++.+.....|.++|....- ...+....+ ....-.|
T Consensus 173 ~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~-----------------------~~~~~L~~g~~~l~~~~~qpEGi 229 (255)
T 3qqz_A 173 DDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEV-----------------------IGEMSLTKGSRGLSHNIKQAEGV 229 (255)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-----------------------EEEEECSTTGGGCSSCCCSEEEE
T ss_pred CCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCE-----------------------EEEEEcCCccCCcccccCCCCee
Confidence 4578999999887888888888899999976431 011111111 1136789
Q ss_pred EEeCCCCcEEEEEcCCCceEEeee
Q 039302 445 HWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 445 ~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+|.+++. +.+++-.+ .+|++.
T Consensus 230 a~d~~G~-lyIvsE~n--~~y~f~ 250 (255)
T 3qqz_A 230 AMDASGN-IYIVSEPN--RFYRFT 250 (255)
T ss_dssp EECTTCC-EEEEETTT--EEEEEE
T ss_pred EECCCCC-EEEEcCCc--eEEEEE
Confidence 9999995 66654444 555543
No 255
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.04 E-value=0.0065 Score=65.08 Aligned_cols=247 Identities=11% Similarity=0.088 Sum_probs=145.6
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|.++...+++ .+.+ |+.++-|.+||.....-.. .. ........-....|+++...+++ .
T Consensus 214 ~~~i~~i~~d~~g-~lwi-gt~~~Gl~~~~~~~~~~~~--~~------------~~~~~~~~l~~~~i~~i~~d~~g--~ 275 (795)
T 4a2l_A 214 TKQIQAILQQSPT-RIWV-ATEGAGLFLINPKTKEIKN--YL------------HSPSNPKSISSNYIRSLAMDSQN--R 275 (795)
T ss_dssp CCCEEEEEEEETT-EEEE-EEBSSCEEEEETTTTEEEE--EC------------CCTTCTTSCSCSBEEEEEECTTS--C
T ss_pred CCeeEEEEEcCCC-CEEE-EECCCCeEEEeCCCCeEEE--ee------------cCCCCccccCCCeEEEEEEcCCC--C
Confidence 4568888887777 4443 3444348888876521000 00 00000000123468999888776 4
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCC---CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEec---
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPN---PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKA--- 322 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~---~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~--- 322 (479)
|..|+.+ -|.+|+..+......... ...-....|.++...+++. +-.|+.++-|.+|+..... ...+..
T Consensus 276 lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~ 350 (795)
T 4a2l_A 276 LWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNR--FKNIRNIPY 350 (795)
T ss_dssp EEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGS--SEEECCCTT
T ss_pred EEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCccc--ceEEcCCCC
Confidence 6666655 588898765432111111 0111245799999999887 5567777789999876543 222211
Q ss_pred ----CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---------cCCCCeEEEEEeCCCCCEEEE
Q 039302 323 ----HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---------YHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 323 ----h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---------~h~~~I~~v~~sp~~~~~las 389 (479)
....|.++...+++ . |-.|+.++-|..||..+.. ...+. .....|.++...+++ .+|..
T Consensus 351 ~~~l~~~~V~~i~~d~~g-~-lWiGt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~~lWi 422 (795)
T 4a2l_A 351 KNSLSDNVVSCIVEDKDK-N-LWIGTNDGGLNLYNPITQR-----FTSYTLQEDESARGIGSNNIKAVYVDEKK-SLVYI 422 (795)
T ss_dssp SSSCSCSSEEEEEECTTS-C-EEEEESSSCEEEECTTTCC-----EEEECCC------CCSCSCEEEEEEETTT-TEEEE
T ss_pred CCCCCCCeeEEEEECCCC-C-EEEEECCCCeEEEcCCCCc-----EEEEecCCCCcccCCCCccEEEEEEcCCC-CEEEE
Confidence 23569999998877 4 5557888789999987654 22222 123578999988744 64666
Q ss_pred EeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 390 SSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
|+.++-|.+||....... .... . .+. .....|.++...+++. +.+++. +||.+|++.
T Consensus 423 gt~~~Gl~~~d~~~~~~~------------~~~~--~-~~~-----l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~ 479 (795)
T 4a2l_A 423 GTHAGGLSILHRNSGQVE------------NFNQ--R-NSQ-----LVNENVYAILPDGEGN-LWLGTL-SALVRFNPE 479 (795)
T ss_dssp EETTTEEEEEETTTCCEE------------EECT--T-TSC-----CSCSCEEEEEECSSSC-EEEEES-SCEEEEETT
T ss_pred EeCcCceeEEeCCCCcEE------------Eeec--C-CCC-----cCCCeeEEEEECCCCC-EEEEec-CceeEEeCC
Confidence 777777999998765310 0000 0 000 1123688898888875 555555 778888754
No 256
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.02 E-value=0.00091 Score=60.03 Aligned_cols=212 Identities=10% Similarity=0.033 Sum_probs=126.0
Q ss_pred CcEEecCCCC--ceEEEEeCCCCCCeEEEEeCCC--eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe
Q 039302 225 PLVKFGGHKD--EGYAIDWNPVAPGRLVSGDCNS--CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS 300 (479)
Q Consensus 225 ~~~~~~~h~~--~v~~l~~s~~~~~~l~sg~~dg--~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s 300 (479)
.+.++ .|.. -...|.|+. +. ++.+.+..| .|+.+|+.+++.... ..+..+ .--..+++. +..+++..-
T Consensus 11 v~~~~-phd~~~ftqGL~~~~-~~-LyestG~~g~S~v~~vD~~tgkv~~~--~~l~~~-~fgeGi~~~--~~~ly~ltw 82 (243)
T 3mbr_X 11 VVKRY-PHDTTAFTEGLFYLR-GH-LYESTGETGRSSVRKVDLETGRILQR--AEVPPP-YFGAGIVAW--RDRLIQLTW 82 (243)
T ss_dssp EEEEE-ECCTTCCEEEEEEET-TE-EEEEECCTTSCEEEEEETTTCCEEEE--EECCTT-CCEEEEEEE--TTEEEEEES
T ss_pred EEEEc-CCCCccccccEEEEC-CE-EEEECCCCCCceEEEEECCCCCEEEE--EeCCCC-cceeEEEEe--CCEEEEEEe
Confidence 34445 4654 455899987 33 566666654 899999988765331 111111 111334443 444777777
Q ss_pred CCCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CC---CCeE
Q 039302 301 VDGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HK---HPVT 375 (479)
Q Consensus 301 ~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~---~~I~ 375 (479)
.++.+.+||..+.+ .+.++.....+ ..++ +++..+++|- .++.|.++|..+.+ .+.++.. +. ..++
T Consensus 83 ~~~~v~v~D~~tl~-~~~ti~~~~~G-wglt--~dg~~L~vSd-gs~~l~~iDp~t~~----~~~~I~V~~~g~~~~~lN 153 (243)
T 3mbr_X 83 RNHEGFVYDLATLT-PRARFRYPGEG-WALT--SDDSHLYMSD-GTAVIRKLDPDTLQ----QVGSIKVTAGGRPLDNLN 153 (243)
T ss_dssp SSSEEEEEETTTTE-EEEEEECSSCC-CEEE--ECSSCEEEEC-SSSEEEEECTTTCC----EEEEEECEETTEECCCEE
T ss_pred eCCEEEEEECCcCc-EEEEEeCCCCc-eEEe--eCCCEEEEEC-CCCeEEEEeCCCCe----EEEEEEEccCCcccccce
Confidence 89999999999885 55666543332 3444 4454555554 58899999999987 5666554 22 3456
Q ss_pred EEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE-EeecCCCCeeeEEEeCCCCcEE
Q 039302 376 SIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL-FIHQGQKDLKELHWHTQVPGMI 454 (479)
Q Consensus 376 ~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~-~~h~g~~~V~~v~w~p~~~~ll 454 (479)
.+.|. ++.+++..-.++.|.+.|..+++.... ... ..+.+... ..+....-.+.|+|+|....++
T Consensus 154 eLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~-----------idl-~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lf 219 (243)
T 3mbr_X 154 ELEWV--NGELLANVWLTSRIARIDPASGKVVAW-----------IDL-QALVPDADALTDSTNDVLNGIAFDAEHDRLF 219 (243)
T ss_dssp EEEEE--TTEEEEEETTTTEEEEECTTTCBEEEE-----------EEC-GGGSTTTTSCCCTTSSCEEEEEEETTTTEEE
T ss_pred eeEEe--CCEEEEEECCCCeEEEEECCCCCEEEE-----------EEC-CcCccccccccCCcCCceEEEEEcCCCCEEE
Confidence 77877 446676666788999999988752100 000 00000000 0011113478999999988777
Q ss_pred EEEcCCCceEEeee
Q 039302 455 VSTAADGFNILMPS 468 (479)
Q Consensus 455 ~s~~~dgi~iw~~~ 468 (479)
+++-.-- ++|.+.
T Consensus 220 VTGK~wp-~~~~v~ 232 (243)
T 3mbr_X 220 VTGKRWP-MLYEIR 232 (243)
T ss_dssp EEETTCS-EEEEEE
T ss_pred EECCCCC-cEEEEE
Confidence 7776543 555543
No 257
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.02 E-value=0.0005 Score=62.34 Aligned_cols=199 Identities=8% Similarity=0.043 Sum_probs=122.4
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
-...|.|+. +. ++++.+.+|.|+++|+.+++..... +.. ...-..+++. +..++++.-.++.+.+||..+.+
T Consensus 56 ftqGL~~~~-~~-Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~-~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 56 FTQGLVFHQ-GH-FFESTGHQGTLRQLSLESAQPVWME---RLG-NIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CEEEEEEET-TE-EEEEETTTTEEEECCSSCSSCSEEE---ECT-TCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTE
T ss_pred ccceEEEEC-CE-EEEEcCCCCEEEEEECCCCcEEeEE---CCC-CcceeEEEEe--CCEEEEEEccCCEEEEEECCcCc
Confidence 346888874 33 7777888899999999987653321 221 1122445554 44477777789999999999885
Q ss_pred ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCC---CeEEEEEeCCCCCEEEE
Q 039302 315 SALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKH---PVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 315 ~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~---~I~~v~~sp~~~~~las 389 (479)
.+.++..... -..+++ ++ ..|+.+..++.|.++|..+.+ .+.++.. +.. .++.+.|. ++.+++.
T Consensus 128 -~~~ti~~~~e-GwGLt~--Dg-~~L~vSdGs~~l~~iDp~T~~----v~~~I~V~~~g~~v~~lNeLe~~--dG~lyan 196 (268)
T 3nok_A 128 -RERTTRYSGE-GWGLCY--WN-GKLVRSDGGTMLTFHEPDGFA----LVGAVQVKLRGQPVELINELECA--NGVIYAN 196 (268)
T ss_dssp -EEEEEECSSC-CCCEEE--ET-TEEEEECSSSEEEEECTTTCC----EEEEEECEETTEECCCEEEEEEE--TTEEEEE
T ss_pred -EEEEEeCCCc-eeEEec--CC-CEEEEECCCCEEEEEcCCCCe----EEEEEEeCCCCcccccccccEEe--CCEEEEE
Confidence 5556653222 234443 45 444444558899999999987 5666543 222 45678887 4466666
Q ss_pred EeCCCcEEEEECCCCCChHHH--HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEe
Q 039302 390 SSADNQLTIWDLSLEKDEEEE--AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILM 466 (479)
Q Consensus 390 ~s~Dg~I~iwdl~~~~~~~~~--~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~ 466 (479)
.-.++.|.+.|..+++..... ..+... .+.+ .+....-.+.|+|+|....+++++-.-- ++|.
T Consensus 197 vw~s~~I~vIDp~TG~V~~~Idl~~L~~~----------~~~~---~~~~~~vlNGIA~dp~~~rlfVTGK~Wp-~~~e 261 (268)
T 3nok_A 197 IWHSSDVLEIDPATGTVVGVIDASALTRA----------VAGQ---VTNPEAVLNGIAVEPGSGRIFMTGKLWP-RLFE 261 (268)
T ss_dssp ETTCSEEEEECTTTCBEEEEEECHHHHHH----------HTTT---CCCTTCCEEEEEECTTTCCEEEEETTCS-EEEE
T ss_pred ECCCCeEEEEeCCCCcEEEEEECCCCccc----------cccc---ccCcCCceEEEEEcCCCCEEEEeCCCCC-ceEE
Confidence 667889999999887521000 000000 0000 0111124789999999888888776543 4443
No 258
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.01 E-value=0.003 Score=60.94 Aligned_cols=144 Identities=14% Similarity=0.115 Sum_probs=87.5
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCC--CcEEEEEECC--CCCcEEEEEeCCCcEEEEEcCCCCceeeEEec
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHA--ASVEDLQWSP--TESDVFASCSVDGNIAIWDTRVGKSALMSFKA 322 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~--~~V~~l~~sp--~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~ 322 (479)
.++.+..++.|..+|..++.. |........+.. ..+.++.-.| .+. .+..++.++.|..+|.++++ .+....
T Consensus 190 ~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~v~~~~~~g~l~~~d~~tG~-~~w~~~- 266 (376)
T 3q7m_A 190 AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNG-VVFALAYNGNLTALDLRSGQ-IMWKRE- 266 (376)
T ss_dssp EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETT-EEEEECTTSCEEEEETTTCC-EEEEEC-
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECC-EEEEEecCcEEEEEECCCCc-EEeecc-
Confidence 788888899999999987654 221111000000 0000000111 133 67778889999999999886 333332
Q ss_pred CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEEC
Q 039302 323 HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 323 h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl 401 (479)
......+... + ..|..++.++.|..+|..+++ .+..... ....+.+.... + ..|+.++.+|.|.++|.
T Consensus 267 -~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~--~-~~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 267 -LGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGV----TLWTQSDLLHRLLTSPVLY--N-GNLVVGDSEGYLHWINV 335 (376)
T ss_dssp -CCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCC----EEEEECTTTTSCCCCCEEE--T-TEEEEECTTSEEEEEET
T ss_pred -CCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCc----EEEeecccCCCcccCCEEE--C-CEEEEEeCCCeEEEEEC
Confidence 2334445544 3 567777889999999999887 5555542 22233333333 3 67888889999999999
Q ss_pred CCCC
Q 039302 402 SLEK 405 (479)
Q Consensus 402 ~~~~ 405 (479)
.+++
T Consensus 336 ~tG~ 339 (376)
T 3q7m_A 336 EDGR 339 (376)
T ss_dssp TTCC
T ss_pred CCCc
Confidence 8873
No 259
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.00 E-value=0.0045 Score=59.66 Aligned_cols=139 Identities=12% Similarity=0.109 Sum_probs=83.9
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
.++.++.++.|..+|..++.. |..... -.....++ .. +. .++.++.++.|..+|.++++ .+..+......
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~-~~~~~~p~----~~--~~-~v~v~~~~g~l~~~d~~tG~-~~W~~~~~~~~ 175 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTVAWQTKVA-GEALSRPV----VS--DG-LVLIHTSNGQLQALNEADGA-VKWTVNLDMPS 175 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECS-SCCCSCCE----EE--TT-EEEEECTTSEEEEEETTTCC-EEEEEECCC--
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEeCC-CceEcCCE----EE--CC-EEEEEcCCCeEEEEECCCCc-EEEEEeCCCCc
Confidence 888899999999999987654 221111 00111122 11 33 67788889999999999886 33333322111
Q ss_pred E-----EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCC----------e-EEEEEeCCCCCEEEEE
Q 039302 327 V-----NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHP----------V-TSIEWSPHEGSTLAVS 390 (479)
Q Consensus 327 v-----~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~----------I-~~v~~sp~~~~~las~ 390 (479)
. ...... + ..++.++.++.|..+|.++++ .+..+...... + ...... + ..+..+
T Consensus 176 ~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~----~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~-~~v~~~ 245 (376)
T 3q7m_A 176 LSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQ----MIWQQRISQATGSTEIDRLSDVDTTPVVV--N-GVVFAL 245 (376)
T ss_dssp ---CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCC----EEEEEECCC-----------CCCCCCEEE--T-TEEEEE
T ss_pred eeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCc----EEEEEecccCCCCcccccccccCCCcEEE--C-CEEEEE
Confidence 0 111222 2 467778889999999999887 55554422100 0 111121 3 567778
Q ss_pred eCCCcEEEEECCCCC
Q 039302 391 SADNQLTIWDLSLEK 405 (479)
Q Consensus 391 s~Dg~I~iwdl~~~~ 405 (479)
+.++.|..+|..+++
T Consensus 246 ~~~g~l~~~d~~tG~ 260 (376)
T 3q7m_A 246 AYNGNLTALDLRSGQ 260 (376)
T ss_dssp CTTSCEEEEETTTCC
T ss_pred ecCcEEEEEECCCCc
Confidence 889999999998763
No 260
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.99 E-value=0.0046 Score=58.39 Aligned_cols=163 Identities=9% Similarity=-0.051 Sum_probs=105.9
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
..+.+|+|.+....++.+-...+.|..+++....... ..+...-.....+++.+.+.+++++-...+.|.++++...
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~---~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~ 111 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ---NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS 111 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC---EEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE---EEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC
Confidence 3677999998765244555567789999986542210 0111122346788998866657777777889999998764
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
. ............+.+++.|.++.++.+-. ..+.|...++.... ........-...+.|+|+|.++.++.+=+.
T Consensus 112 ~-~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~----~~~~~~~~l~~Pnglavd~~~~~lY~aD~~ 186 (318)
T 3sov_A 112 L-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----RFIIINSEIYWPNGLTLDYEEQKLYWADAK 186 (318)
T ss_dssp S-CEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSCEEEEEEETTTTEEEEEETT
T ss_pred c-EEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC----eEEEEECCCCCccEEEEeccCCEEEEEECC
Confidence 3 22222234456789999987646666552 35788888876433 122222223456899999977667777777
Q ss_pred CCcEEEEECCCC
Q 039302 393 DNQLTIWDLSLE 404 (479)
Q Consensus 393 Dg~I~iwdl~~~ 404 (479)
.+.|..+|+...
T Consensus 187 ~~~I~~~d~dG~ 198 (318)
T 3sov_A 187 LNFIHKSNLDGT 198 (318)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEcCCCC
Confidence 889999998643
No 261
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=97.97 E-value=0.019 Score=61.49 Aligned_cols=247 Identities=11% Similarity=0.117 Sum_probs=146.1
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..|+++...+++.-.++ +.. -|.+|+.....-.. .. ..+.....-....|.++...+++ .|
T Consensus 263 ~~i~~i~~d~~g~lWig--t~~-Gl~~~~~~~~~~~~--~~------------~~~~~~~~l~~~~i~~i~~D~~g--~l 323 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWIG--TFN-DLNIYHEGTDSFAS--YS------------SNPVENGSLSQRSVRSIFMDSQG--GM 323 (795)
T ss_dssp SBEEEEEECTTSCEEEE--ESS-CEEEEETTTTEEEE--EC------------CCTTSTTSCSSSCEEEEEECTTS--CE
T ss_pred CeEEEEEEcCCCCEEEE--eCC-hhheEcCCCCeEEE--Ee------------cCCCCCCCCCCCcEEEEEEeCCc--CE
Confidence 56888888888843333 444 48888876521000 00 00000000123478999888776 57
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCc--ccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe------
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPF--IGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK------ 321 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~--~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~------ 321 (479)
..|+.++-|..|+..+........... .-....|.++...+++. |-.|+.++-|..||..+.. ...+.
T Consensus 324 Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~~~ 399 (795)
T 4a2l_A 324 WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQR--FTSYTLQEDES 399 (795)
T ss_dssp EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCC--EEEECCC----
T ss_pred EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCc--EEEEecCCCCc
Confidence 778888889999876532211101100 11235699999998887 5557777779999987753 22221
Q ss_pred ---cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-----cCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 322 ---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-----YHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 322 ---~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-----~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
.....|.++...+++ .+|..|+.++.|.+||..+.. +..+. .+...|.++...+++ .+.+. +.
T Consensus 400 ~~~l~~~~v~~i~~d~~g-~~lWigt~~~Gl~~~d~~~~~-----~~~~~~~~~~l~~~~v~~i~~d~~g-~lwig-t~- 470 (795)
T 4a2l_A 400 ARGIGSNNIKAVYVDEKK-SLVYIGTHAGGLSILHRNSGQ-----VENFNQRNSQLVNENVYAILPDGEG-NLWLG-TL- 470 (795)
T ss_dssp --CCSCSCEEEEEEETTT-TEEEEEETTTEEEEEETTTCC-----EEEECTTTSCCSCSCEEEEEECSSS-CEEEE-ES-
T ss_pred ccCCCCccEEEEEEcCCC-CEEEEEeCcCceeEEeCCCCc-----EEEeecCCCCcCCCeeEEEEECCCC-CEEEE-ec-
Confidence 123568999988877 646677887889999988765 33332 134578999988754 54444 44
Q ss_pred CcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 394 NQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 394 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
+-|.+|+....... ..... ..+. ......|.++...+++. +.+++. +||..|++.
T Consensus 471 ~Gl~~~~~~~~~~~------------~~~~~-~~~~-----~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~ 525 (795)
T 4a2l_A 471 SALVRFNPEQRSFT------------TIEKE-KDGT-----PVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQE 525 (795)
T ss_dssp SCEEEEETTTTEEE------------ECCBC-TTCC-----BCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEE
T ss_pred CceeEEeCCCCeEE------------Ecccc-cccc-----ccCCceEEEEEECCCCC-EEEEeC-CceEEEeCC
Confidence 45888987654210 00000 0000 00123588898888885 555555 788888764
No 262
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.96 E-value=0.00059 Score=72.72 Aligned_cols=198 Identities=10% Similarity=0.030 Sum_probs=111.2
Q ss_pred ceeEEEEe-cCCCcEEEEEeCCc----eEEEEeCCCCcccccccccccCCCCCccccCCCc-EEecCCCCceEEEEeCCC
Q 039302 171 CVNRIRAM-SQNPHICASWADTG----HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPL-VKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 171 ~V~~v~~~-p~~~~~lat~s~dg----~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~l~~s~~ 244 (479)
.+...+|+ |+|..++.+.+.+| +|+++|+.... +.+ ..+.. ....++|+|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~--------------------~~l~~~~~~---~~~~~~WspD 231 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPS--------------------QTIADKVSG---TNGEIVWGPD 231 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTT--------------------CCCCCCEEE---ECSCCEECSS
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCC--------------------EeCCccccC---ceeeEEEecC
Confidence 67889999 99965555555444 49999998720 110 00111 1346889999
Q ss_pred CCCeEEEEeCC-----CeEEEEecCCCCccccCCCCcc-cCCCcEEEEEECCCCCcEEEEEeC--CCcEEEEEcCCCCce
Q 039302 245 APGRLVSGDCN-----SCIHLWEPASDATWNVDPNPFI-GHAASVEDLQWSPTESDVFASCSV--DGNIAIWDTRVGKSA 316 (479)
Q Consensus 245 ~~~~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~l~s~s~--dg~I~iwD~~~~~~~ 316 (479)
+. .|+....+ ..|+++++.++..... ..+. ........+.|+|+++.++++... ...|.++|+.++...
T Consensus 232 g~-~l~y~~~d~~~~~~~v~~~~lgt~~~~~~--lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~ 308 (751)
T 2xe4_A 232 HT-SLFYVTKDETLRENKVWRHVMGKLQSEDV--CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAH 308 (751)
T ss_dssp TT-EEEEEEECTTCCEEEEEEEETTSCGGGCE--EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTC
T ss_pred CC-EEEEEEECCCCCCCEEEEEECCCCchhcE--EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCC
Confidence 98 55555544 2688888866432110 1111 222346688999999944444432 346888898875212
Q ss_pred e--eEE-ecCCCCEEEEEEcCCCCcEEEEEeCC----CeEEEEeCCCCCCCCceEEE-eecCCC--CeEEEEEeCCCCCE
Q 039302 317 L--MSF-KAHNADVNVISWNRLASCLLASGSDD----GTFSIHDLRLLKGGDSVVAH-FEYHKH--PVTSIEWSPHEGST 386 (479)
Q Consensus 317 ~--~~~-~~h~~~v~~l~~~p~~~~~l~sgs~d----g~i~iwDlr~~~~~~~~~~~-~~~h~~--~I~~v~~sp~~~~~ 386 (479)
. ..+ ........++.|+..+ .+++....+ ..|..+|+.+.. .... +-.|.. .+..+.+. ++.+
T Consensus 309 ~~~~~l~~~~~~~~~s~~~~~g~-~l~~~t~~~~a~~~~L~~~d~~~~~----~~~~~li~~~~~~~l~~~~~~--~~~l 381 (751)
T 2xe4_A 309 NTLEIVRPREKGVRYDVQMHGTS-HLVILTNEGGAVNHKLLIAPRGQPS----DWSHVLVDHSEDVFMESIAVR--SNYL 381 (751)
T ss_dssp CCEEESSCCCTTCCEEEEEETTT-EEEEEECTTTCTTCEEEEEETTSTT----CCCCEEECCCSSEEEEEEEEC--SSEE
T ss_pred ceeEEeecCCCCceEEEeeeeCC-EEEEEeCCCCCCCcEEEEEcCCCcc----cceeeEECCCCCcEEEEEEEE--CCEE
Confidence 2 223 2334455666666544 555555544 367777776432 1112 222333 34555554 4467
Q ss_pred EEEEeCCCcEE--EEEC
Q 039302 387 LAVSSADNQLT--IWDL 401 (479)
Q Consensus 387 las~s~Dg~I~--iwdl 401 (479)
+++...++... ++++
T Consensus 382 v~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 382 VVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTEEEEEEEEC
T ss_pred EEEEEeCCEEEEEEEec
Confidence 77777788644 5554
No 263
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.95 E-value=0.013 Score=55.24 Aligned_cols=205 Identities=6% Similarity=-0.110 Sum_probs=129.5
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..+..+.|.+.+..++.+-...+.|+.+++... ......+...-....++++.+.+..++
T Consensus 35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~--------------------~~~~~~~~~~l~~p~glavd~~~g~ly 94 (318)
T 3sov_A 35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT--------------------ESVQNVVVSGLLSPDGLACDWLGEKLY 94 (318)
T ss_dssp EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSS--------------------SCCCEEEEECCSCCCEEEEETTTTEEE
T ss_pred CccEEEEEEeCCCEEEEEECCCCcEEEEEccCC--------------------CceEEEEcCCCCCccEEEEEcCCCeEE
Confidence 457789999976678888777889999998762 111111222223445677766554255
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
++-...+.|.++++.......+ ..........|++.|.+..++.+-. ..+.|...++.... ........-..-+
T Consensus 95 ~~d~~~~~I~~~~~dG~~~~~l----~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-~~~~~~~~l~~Pn 169 (318)
T 3sov_A 95 WTDSETNRIEVSNLDGSLRKVL----FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIYWPN 169 (318)
T ss_dssp EEETTTTEEEEEETTSCSCEEE----ECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCSCEE
T ss_pred EEECCCCEEEEEECCCCcEEEE----EeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC-eEEEEECCCCCcc
Confidence 5555678999999865322111 1123346789999997764555542 35788888886543 1112222234568
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.|+|++++..++++-+..+.|..+|+.... ..............+++.. +.++.+-...+.|..++...+.
T Consensus 170 glavd~~~~~lY~aD~~~~~I~~~d~dG~~----~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 170 GLTLDYEEQKLYWADAKLNFIHKSNLDGTN----RQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred EEEEeccCCEEEEEECCCCEEEEEcCCCCc----eEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCCCC
Confidence 999999776777777788899999987433 1222232344556777763 3677777778899999986553
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=97.94 E-value=0.0023 Score=60.00 Aligned_cols=195 Identities=11% Similarity=0.050 Sum_probs=113.5
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC--cEEEEEcC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--NIAIWDTR 311 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--~I~iwD~~ 311 (479)
....+++|++++. ++++-..++.|..|+.... ... +......+..+++.+++. ++++..... .|..+|..
T Consensus 32 ~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~-----~~~~~~~p~gia~~~dG~-l~vad~~~~~~~v~~~d~~ 103 (306)
T 2p4o_A 32 TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI-----HATVEGKVSGLAFTSNGD-LVATGWNADSIPVVSLVKS 103 (306)
T ss_dssp CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE-----EEECSSEEEEEEECTTSC-EEEEEECTTSCEEEEEECT
T ss_pred CCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEE-----EEeCCCCceeEEEcCCCc-EEEEeccCCcceEEEEcCC
Confidence 4677999999876 6666667899999997642 211 111234688999999998 666554332 46667776
Q ss_pred CCCceeeEEe--cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---------cCCCCeEEEEEe
Q 039302 312 VGKSALMSFK--AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---------YHKHPVTSIEWS 380 (479)
Q Consensus 312 ~~~~~~~~~~--~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---------~h~~~I~~v~~s 380 (479)
+++ +..+. ......+.++..+.+ .++++-..++.|.++|...... .+.... ..-...+.| +
T Consensus 104 ~g~--~~~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~---~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 104 DGT--VETLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSG---SIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp TSC--EEEEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEE---EEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred CCe--EEEEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcE---eEEEECCccccccccCCCCcCCCc--C
Confidence 664 22221 122334556655544 5666665689999999865320 111110 111234555 7
Q ss_pred CCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc-C
Q 039302 381 PHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA-A 459 (479)
Q Consensus 381 p~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~-~ 459 (479)
|+++.++++-+..++|.+|++..... -...+. +... .....+++.+++. +.++.. .
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~-------------------~~~~~~-~~~~--~~P~gi~vd~dG~-l~va~~~~ 232 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDK-------------------PGEPEI-FVEQ--TNIDDFAFDVEGN-LYGATHIY 232 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSC-------------------BCCCEE-EEES--CCCSSEEEBTTCC-EEEECBTT
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCC-------------------CCccEE-Eecc--CCCCCeEECCCCC-EEEEeCCC
Confidence 76655667777788999999875210 001122 2111 3467788888875 444443 3
Q ss_pred CCceEEee
Q 039302 460 DGFNILMP 467 (479)
Q Consensus 460 dgi~iw~~ 467 (479)
+.|.+|++
T Consensus 233 ~~V~~~~~ 240 (306)
T 2p4o_A 233 NSVVRIAP 240 (306)
T ss_dssp CCEEEECT
T ss_pred CeEEEECC
Confidence 44666654
No 265
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.93 E-value=0.0072 Score=64.25 Aligned_cols=168 Identities=12% Similarity=0.019 Sum_probs=107.8
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
....+.+|+|.+....++++-...+.|+.+++............+.........|++.+.+.+++++-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 34567899999866524455555678998988652110000011111234567899998887688888888999999998
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
... ....+.........|+++|..+.++++-... +.|.+.++.... ....+...-...+.|++++..+.++++=
T Consensus 502 G~~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~----~~~lv~~~l~~P~GLavD~~~~~LYwaD 576 (791)
T 3m0c_C 502 GVK-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWVD 576 (791)
T ss_dssp SSS-EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC----EEEEECSSCSCEEEEEEETTTTEEEEEE
T ss_pred CCe-EEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc----eEEEEeCCCCCceEEEEecCCCeEEEEe
Confidence 653 2222333445688999999864666665433 788888886543 2333333345788999998776666666
Q ss_pred eCCCcEEEEECCCC
Q 039302 391 SADNQLTIWDLSLE 404 (479)
Q Consensus 391 s~Dg~I~iwdl~~~ 404 (479)
...+.|...++...
T Consensus 577 ~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 577 SKLHSISSIDVNGG 590 (791)
T ss_dssp TTTTEEEEEETTSC
T ss_pred CCCCcEEEEecCCC
Confidence 66778999998654
No 266
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.91 E-value=0.00033 Score=70.93 Aligned_cols=121 Identities=10% Similarity=0.090 Sum_probs=82.6
Q ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc----------eeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEE
Q 039302 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS----------ALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSI 351 (479)
Q Consensus 282 ~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~----------~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~i 351 (479)
...++.++|+|+.+++++..+.+|.++|+.+.+. .+.....-......++|+|+| ...++.--|++|.+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~ldsqV~k 356 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDSQVVK 356 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTTEEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCCcEEE
Confidence 4567899999997777777899999999996420 111122234567889999999 88888999999999
Q ss_pred EeCCCC------CCCCceEEEeecCCCCe-----EEEEEeCCCCCEEEEEeC-C-CcE-----------EEEECCCC
Q 039302 352 HDLRLL------KGGDSVVAHFEYHKHPV-----TSIEWSPHEGSTLAVSSA-D-NQL-----------TIWDLSLE 404 (479)
Q Consensus 352 wDlr~~------~~~~~~~~~~~~h~~~I-----~~v~~sp~~~~~las~s~-D-g~I-----------~iwdl~~~ 404 (479)
||+... ......+.++..|-.+- ..+..+|++ .+|+++.. . .++ .++|++..
T Consensus 357 wdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DG-k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 357 WNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATN-DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp EEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCS-SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred EEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCC-CEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 998761 11123777777776542 122457855 77777654 2 333 67888543
No 267
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.88 E-value=0.023 Score=55.43 Aligned_cols=215 Identities=8% Similarity=-0.089 Sum_probs=132.9
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
+......+..|+|.+.+..++.+-...+.|+.+++..... .......+........+|++.+.
T Consensus 107 ~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~-----------------~~~~~~~~~~~~~~p~glavD~~ 169 (400)
T 3p5b_L 107 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWI 169 (400)
T ss_dssp EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CCCEEEECSSCSCEEEEEEETT
T ss_pred eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCC-----------------CCcceEEEeCCCCCcccEEEEec
Confidence 3455678899999997767887767788899988865110 01122222223345667777765
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-CCcEEEEEcCCCCceeeEEecC
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-DGNIAIWDTRVGKSALMSFKAH 323 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-dg~I~iwD~~~~~~~~~~~~~h 323 (479)
+..++++-...+.|.+.++.......+ +.........|+++|.+..++.+-.. .+.|...++.... ........
T Consensus 170 ~~~lY~~d~~~~~I~~~~~~g~~~~~l----~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~-~~~~~~~~ 244 (400)
T 3p5b_L 170 HSNIYWTDSVLGTVSVADTKGVKRKTL----FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTEN 244 (400)
T ss_dssp TTEEEEEETTTTEEEEECTTTCSEEEE----EECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS-CEEEECSS
T ss_pred CCceEEEECCCCeEEEEeCCCCceEEE----EeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc-cEEEEECC
Confidence 543555555678999998865332111 12223457899999977745555433 4789888887643 22222333
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
-...+.|++++.+..++++-+..+.|..+|+..... ..+......-.....|++. ++.++.+-...+.|..+|...
T Consensus 245 l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~~ 320 (400)
T 3p5b_L 245 IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRLT 320 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC--EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESSS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc--EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcCC
Confidence 356799999988767777777788999999865431 1122211222345577774 447777777788999998655
Q ss_pred CC
Q 039302 404 EK 405 (479)
Q Consensus 404 ~~ 405 (479)
+.
T Consensus 321 G~ 322 (400)
T 3p5b_L 321 GS 322 (400)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 268
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.88 E-value=0.0062 Score=60.11 Aligned_cols=158 Identities=7% Similarity=0.028 Sum_probs=95.2
Q ss_pred ceeEEEEec-CCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 171 CVNRIRAMS-QNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 171 ~V~~v~~~p-~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
....|+++| ++..+.++-.. +.|+.+|+.. ..+..+.........|+|++++. +|
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~-~~I~~id~~~----------------------~~v~~~~~~~~~P~~ia~d~~G~-~l 193 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQ-HPTRLIDFEK----------------------EYVSTVYSGLSKVRTICWTHEAD-SM 193 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBT-EEEEEEETTT----------------------TEEEEEECCCSCEEEEEECTTSS-EE
T ss_pred CCCEEEECCCCCCeEEEEeCC-CcEEEEECCC----------------------CEEEEEecCCCCcceEEEeCCCC-EE
Confidence 356788887 34355555333 7888888765 12233333445688999999987 66
Q ss_pred EEEeCC-C----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCC
Q 039302 250 VSGDCN-S----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 250 ~sg~~d-g----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
+.+... + .+...+. .+..... ..+. .......++++|++..++++-..++.|..++...............
T Consensus 194 yvad~~~~~~~~~v~~~~~-~g~~~~~--~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~ 269 (430)
T 3tc9_A 194 IITNDQNNNDRPNNYILTR-ESGFKVI--TELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDS 269 (430)
T ss_dssp EEEECCSCTTSEEEEEEEG-GGTSCSE--EEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEeCCCCcccceEEEEeC-CCceeee--eeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCC
Confidence 666542 2 2333443 2211100 0111 1234567889994443777777788999999986532111111122
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
...+.|+|+|++..++++-...+.|..++...
T Consensus 270 ~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 270 GWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp SCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred CcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 34688999999944777777888999988653
No 269
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.88 E-value=0.0018 Score=61.17 Aligned_cols=160 Identities=8% Similarity=0.049 Sum_probs=98.2
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccC-CCCc--------------ccCCCcEEEEEECC-CCCcEEE
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVD-PNPF--------------IGHAASVEDLQWSP-TESDVFA 297 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~-~~~~--------------~~h~~~V~~l~~sp-~~~~~l~ 297 (479)
....+++|.+++. ++.++..++.|..|+..+....... ...+ ......+..|++.+ ++. |.
T Consensus 19 ~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~--l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ--LY 95 (322)
T ss_dssp SCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE--EE
T ss_pred CCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc--EE
Confidence 3456789999876 7888988999999998653221100 0000 01123578999998 554 44
Q ss_pred EEeCCCcEEEEEcCCCCceeeEEec-----CCCCEEEEEEcC-CCCcEEEEEeC-----------------CCeEEEEeC
Q 039302 298 SCSVDGNIAIWDTRVGKSALMSFKA-----HNADVNVISWNR-LASCLLASGSD-----------------DGTFSIHDL 354 (479)
Q Consensus 298 s~s~dg~I~iwD~~~~~~~~~~~~~-----h~~~v~~l~~~p-~~~~~l~sgs~-----------------dg~i~iwDl 354 (479)
.+...+.|..+|..++. +..+.. .....+.+++.+ ++ .++++-.. +|.|..||.
T Consensus 96 v~d~~~~i~~~d~~~g~--~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~ 172 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGH--ATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDP 172 (322)
T ss_dssp EEETTTEEEEECTTCEE--CEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEET
T ss_pred EEECCCCEEEEeCCCCE--EEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCCceEEEEeC
Confidence 44444558888876542 222211 123478899999 88 66665432 367888887
Q ss_pred CCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 355 RLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 355 r~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.+.. . ..+...-.....|+|+|++..++++-+..+.|.+|++...
T Consensus 173 ~~~~----~-~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 173 STKE----T-TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp TTTE----E-EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred CCCE----E-EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 6554 2 2221112234679999966335555566789999998753
No 270
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.86 E-value=0.0016 Score=69.28 Aligned_cols=192 Identities=10% Similarity=0.051 Sum_probs=109.2
Q ss_pred ceEEEEeC-CCCCCeEEEEe-CCC----eEEEEecCCC-CccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----
Q 039302 235 EGYAIDWN-PVAPGRLVSGD-CNS----CIHLWEPASD-ATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD----- 302 (479)
Q Consensus 235 ~v~~l~~s-~~~~~~l~sg~-~dg----~I~lwd~~~~-~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d----- 302 (479)
.+...+|| |++. +||-+. .+| .|+++|+.++ ... ...+. .....+.|+|+++ .|+....+
T Consensus 175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l---~~~~~---~~~~~~~WspDg~-~l~y~~~d~~~~~ 246 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTI---ADKVS---GTNGEIVWGPDHT-SLFYVTKDETLRE 246 (751)
T ss_dssp EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCC---CCCEE---EECSCCEECSSTT-EEEEEEECTTCCE
T ss_pred EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeC---Ccccc---CceeeEEEecCCC-EEEEEEECCCCCC
Confidence 67789999 9998 666443 333 5999999876 421 11121 1134678999998 44444444
Q ss_pred CcEEEEEcCCCCce-eeEEe-cCCCCEEEEEEcCCCCcEEEEEeC--CCeEEEEeCCCCCCCCce-EEEe-ecCCCCeEE
Q 039302 303 GNIAIWDTRVGKSA-LMSFK-AHNADVNVISWNRLASCLLASGSD--DGTFSIHDLRLLKGGDSV-VAHF-EYHKHPVTS 376 (479)
Q Consensus 303 g~I~iwD~~~~~~~-~~~~~-~h~~~v~~l~~~p~~~~~l~sgs~--dg~i~iwDlr~~~~~~~~-~~~~-~~h~~~I~~ 376 (479)
..|.++++.++... ...+. ........+.|+|++..++++... ...|.++|+..... .. +..+ ........+
T Consensus 247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~--~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA--HNTLEIVRPREKGVRYD 324 (751)
T ss_dssp EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT--CCCEEESSCCCTTCCEE
T ss_pred CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC--CceeEEeecCCCCceEE
Confidence 25888888776321 22232 233446788999999444444432 34688889877531 12 1333 334556677
Q ss_pred EEEeCCCCCEEEEEeCC--C--cEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCce-EEeecCCCCeeeEEEeCCCC
Q 039302 377 IEWSPHEGSTLAVSSAD--N--QLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQL-LFIHQGQKDLKELHWHTQVP 451 (479)
Q Consensus 377 v~~sp~~~~~las~s~D--g--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l-~~~h~g~~~V~~v~w~p~~~ 451 (479)
+.|+. ++.+++.+..+ + .|..+++..... .+. +..+.....+..+.|. +.
T Consensus 325 ~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~----------------------~~~~li~~~~~~~l~~~~~~--~~ 379 (751)
T 2xe4_A 325 VQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSD----------------------WSHVLVDHSEDVFMESIAVR--SN 379 (751)
T ss_dssp EEEET-TTEEEEEECTTTCTTCEEEEEETTSTTC----------------------CCCEEECCCSSEEEEEEEEC--SS
T ss_pred Eeeee-CCEEEEEeCCCCCCCcEEEEEcCCCccc----------------------ceeeEECCCCCcEEEEEEEE--CC
Confidence 77765 43555555444 3 566666543110 122 3334322245556665 45
Q ss_pred cEEEEEcCCC
Q 039302 452 GMIVSTAADG 461 (479)
Q Consensus 452 ~ll~s~~~dg 461 (479)
.++++...++
T Consensus 380 ~lv~~~~~~g 389 (751)
T 2xe4_A 380 YLVVAGRRAG 389 (751)
T ss_dssp EEEEEEEETT
T ss_pred EEEEEEEeCC
Confidence 6888888777
No 271
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.84 E-value=0.018 Score=61.26 Aligned_cols=212 Identities=8% Similarity=-0.094 Sum_probs=128.8
Q ss_pred ecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCC
Q 039302 166 VAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVA 245 (479)
Q Consensus 166 ~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~ 245 (479)
......+..|+|.+....++.+-...+.|+.+++..... .......+........+|++.+.+
T Consensus 420 ~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~-----------------~~~~~~vi~~~l~~P~GLAvD~~~ 482 (791)
T 3m0c_C 420 IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-----------------VSSYDTVISRDIQAPDGLAVDWIH 482 (791)
T ss_dssp ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCCCEEEEETTT
T ss_pred ecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCC-----------------CcceeEEEecCCCCcceeeeeecC
Confidence 344566778889886657777777778888888765110 011222232223345567776666
Q ss_pred CCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEEecCC
Q 039302 246 PGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 246 ~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~~~h~ 324 (479)
..++++-...+.|.+.++.......+ +.........|+++|.+..++.+-... +.|...++.... ....+...-
T Consensus 483 ~~LY~tD~~~~~I~v~~ldG~~~~~l----~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~-~~~lv~~~l 557 (791)
T 3m0c_C 483 SNIYWTDSVLGTVSVADTKGVKRKTL----FRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENI 557 (791)
T ss_dssp TEEEEEETTTTEEEEEETTSSSEEEE----EECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-EEEEECSSC
T ss_pred CcEEEEecCCCeEEEEeCCCCeEEEE----EeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-eEEEEeCCC
Confidence 53555656678999999865332111 112234588999999876466554333 778888887653 222223333
Q ss_pred CCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec--CCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 325 ADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY--HKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 325 ~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~--h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...+.|++++.++.++++-...+.|..+++.... ....+.. .-....+|++.. +.++++-...+.|...+..
T Consensus 558 ~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~----~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~~~dk~ 631 (791)
T 3m0c_C 558 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN----RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRL 631 (791)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS----CEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCc----eEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEEEEeCC
Confidence 5689999998775777776777899999986544 2222222 122345676653 3666776677888888866
Q ss_pred CCC
Q 039302 403 LEK 405 (479)
Q Consensus 403 ~~~ 405 (479)
.+.
T Consensus 632 tG~ 634 (791)
T 3m0c_C 632 TGS 634 (791)
T ss_dssp TCC
T ss_pred CCc
Confidence 553
No 272
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.73 E-value=0.0023 Score=67.08 Aligned_cols=72 Identities=15% Similarity=0.236 Sum_probs=48.4
Q ss_pred EEEECCCCCcEEEEEeCCC-------------------cEEEEEcCCCCceeeEEec--CC-------CCEEEEEEcCCC
Q 039302 285 DLQWSPTESDVFASCSVDG-------------------NIAIWDTRVGKSALMSFKA--HN-------ADVNVISWNRLA 336 (479)
Q Consensus 285 ~l~~sp~~~~~l~s~s~dg-------------------~I~iwD~~~~~~~~~~~~~--h~-------~~v~~l~~~p~~ 336 (479)
.+++.|... +++.++.++ .|..+|.++++ .+-.+.. |. .+.....+..++
T Consensus 234 ~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~-~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G 311 (668)
T 1kv9_A 234 SMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGK-LAWHYQVTPGDSWDFTATQQITLAELNIDG 311 (668)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCC-EEEEEESSTTCCSCCCCCSCEEEEEEEETT
T ss_pred ceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCc-eeeEeecCCCccccccCCCCcEEEEeccCC
Confidence 467888777 777777665 39999999986 4444432 22 222222333344
Q ss_pred C--cEEEEEeCCCeEEEEeCCCCC
Q 039302 337 S--CLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 337 ~--~~l~sgs~dg~i~iwDlr~~~ 358 (479)
. ..|+.++.+|.++++|.++++
T Consensus 312 ~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 312 KPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EEEEEEEECCTTSEEEEEETTTCC
T ss_pred cEEEEEEEECCCCEEEEEECCCCC
Confidence 1 268899999999999999987
No 273
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.72 E-value=0.02 Score=56.46 Aligned_cols=202 Identities=10% Similarity=0.001 Sum_probs=114.6
Q ss_pred ceeEEEEecC--CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 171 CVNRIRAMSQ--NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 171 ~V~~v~~~p~--~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
....|++.|+ +..|+++-.. +.|+.++... ..+.++........+|+|++++. +
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~----------------------g~v~~~~~~~~~P~giavd~dG~-l 195 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVN----------------------QYVDIKTTNIGQCADVNFTLNGD-M 195 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBT-SCEEEEETTT----------------------TEEEEECCCCSCEEEEEECTTCC-E
T ss_pred CCceEEEccccCCCEEEEEeCC-CCEEEEECCC----------------------CEEEEeecCCCCccEEEECCCCC-E
Confidence 4567888884 3355555333 7888888754 12233333445688999999997 5
Q ss_pred EEEEeCC---C-eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe-cC
Q 039302 249 LVSGDCN---S-CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK-AH 323 (479)
Q Consensus 249 l~sg~~d---g-~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~-~h 323 (479)
+++.... . .+...+........ ..+ ........++++|.+.+++++-..++.|+.+|..++......+. ..
T Consensus 196 yVad~~~~~~~~gv~~~~~~~~~~~~---~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~ 271 (433)
T 4hw6_A 196 VVVDDQSSDTNTGIYLFTRASGFTER---LSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT 271 (433)
T ss_dssp EEEECCSCTTSEEEEEECGGGTTCCE---EEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred EEEcCCCCcccceEEEEECCCCeecc---ccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence 5554421 1 23333332111100 001 11234567889994443777766788899999886642111111 11
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC---------------CCCeEEEEE---------
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH---------------KHPVTSIEW--------- 379 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h---------------~~~I~~v~~--------- 379 (479)
...-..|+|+|++..++++-...+.|+.+++............+.+. -.....+++
T Consensus 272 ~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~d 351 (433)
T 4hw6_A 272 KGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGE 351 (433)
T ss_dssp CSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTS
T ss_pred CCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccccc
Confidence 22235799999994477777778899998865321100011222221 123567888
Q ss_pred eCCCCCEEEEEeCCCcEEEEEC
Q 039302 380 SPHEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 380 sp~~~~~las~s~Dg~I~iwdl 401 (479)
.+ ++.++++-...++|+.++.
T Consensus 352 d~-~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 352 ED-EYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp SC-CEEEEEEETTTTEEEEECT
T ss_pred CC-CCcEEEEECCCCEEEEECC
Confidence 44 4467777677788998874
No 274
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.039 Score=58.82 Aligned_cols=248 Identities=12% Similarity=0.058 Sum_probs=141.7
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..|+++...+++ .+ ..|+..+-|.+++.....-....... . ... .............|.+|....++ .|
T Consensus 258 ~~i~~i~~d~~g-~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~---f--~~~--~~~~~~~~l~~~~v~~i~~D~~g--~l 326 (781)
T 3v9f_A 258 SYIFSIKQLKDN-KL-WIATELNGIMILDLQQNQFLLPEQIR---F--EFI--REGDNNYSLSNASARYIFQDSFN--NI 326 (781)
T ss_dssp CCEEEEEECTTS-EE-EEEESSSCEEEEETTCC------------C--EEE--CBCSSTTSBSSSCEEEEEECSSC--CE
T ss_pred ceEEEEEECCCC-CE-EEEeCCCCeEEECCCCCeeeeeeccc---c--ccc--cCCCCCCCCCCCeEEEEEEeCCC--CE
Confidence 568888887777 33 34456456888887652100000000 0 000 00000001123478888887766 57
Q ss_pred EEEeCCCeEEEEecCCCCccccCCC-----CcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEE----
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPN-----PFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSF---- 320 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~-----~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~---- 320 (479)
-.|+.++-|..++............ ...-....|.++...+++. |-.|+.++-|.+||..+.. ...+
T Consensus 327 Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~ 402 (781)
T 3v9f_A 327 WIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK--LWIGTDGGGINVFENGKRV--AIYNKENR 402 (781)
T ss_dssp EEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC--EEEEEBSSCEEEEETTEEE--EECC----
T ss_pred EEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC--EEEEeCCCcEEEEECCCCe--EEEccCCC
Confidence 7788788889998865432111100 0111235699999988876 5556666678889976542 1111
Q ss_pred ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---cCCCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 321 KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---YHKHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 321 ~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---~h~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
......|.++...+++ .+ ..|+.++.|..+|.++.. +..+. .....|.++...+++ . |..|+. +-|.
T Consensus 403 ~~~~~~v~~i~~d~~g-~l-Wigt~~~Gl~~~~~~~~~-----~~~~~~~~~~~~~v~~i~~d~~g-~-lwigt~-~Gl~ 472 (781)
T 3v9f_A 403 ELLSNSVLCSLKDSEG-NL-WFGTYLGNISYYNTRLKK-----FQIIELEKNELLDVRVFYEDKNK-K-IWIGTH-AGVF 472 (781)
T ss_dssp -CCCSBEEEEEECTTS-CE-EEEETTEEEEEECSSSCE-----EEECCSTTTCCCCEEEEEECTTS-E-EEEEET-TEEE
T ss_pred CCCCcceEEEEECCCC-CE-EEEeccCCEEEEcCCCCc-----EEEeccCCCCCCeEEEEEECCCC-C-EEEEEC-CceE
Confidence 1234568899888777 44 447777788999887654 33332 134678999888744 4 444555 5588
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecC-----CCCeeeEEEeCCCCcEEEEEcCCCceEEee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQG-----QKDLKELHWHTQVPGMIVSTAADGFNILMP 467 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g-----~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~ 467 (479)
+||....... .+.... ...|.++...+++. +.+++..+||..|++
T Consensus 473 ~~~~~~~~~~------------------------~~~~~~~~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 522 (781)
T 3v9f_A 473 VIDLASKKVI------------------------HHYDTSNSQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTP 522 (781)
T ss_dssp EEESSSSSCC------------------------EEECTTTSSCSCSCEEEEEECTTCC-EEEEESSSCEEEECT
T ss_pred EEeCCCCeEE------------------------ecccCcccccccceeEEEEEcCCCC-EEEEEcCCCEEEEeC
Confidence 8988765310 011100 24588888888875 666666567777654
No 275
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.68 E-value=0.0027 Score=66.43 Aligned_cols=200 Identities=11% Similarity=0.032 Sum_probs=111.1
Q ss_pred eEEEEec-CCCcEEEEEeCCc-----------eEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC-CCCceEEE
Q 039302 173 NRIRAMS-QNPHICASWADTG-----------HVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG-HKDEGYAI 239 (479)
Q Consensus 173 ~~v~~~p-~~~~~lat~s~dg-----------~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l 239 (479)
..+++.+ ++ .+++.|+.+. .+.+||.... ....+..+.. +.....++
T Consensus 189 ~~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~-------------------~w~~~~~~~~~~~~~~~~~ 248 (656)
T 1k3i_A 189 AAAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTG-------------------IVSDRTVTVTKHDMFCPGI 248 (656)
T ss_dssp SEEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTC-------------------CBCCCEEEECSCCCSSCEE
T ss_pred eeEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCC-------------------cEEeCcccCCCCCCccccc
Confidence 3567777 55 7888876543 5788888762 1233333322 33344567
Q ss_pred EeCCCCCCeEEEEeC-CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CC-----CcEEEEEcCC
Q 039302 240 DWNPVAPGRLVSGDC-NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VD-----GNIAIWDTRV 312 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~-dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~d-----g~I~iwD~~~ 312 (479)
++..++. +++.|+. +..+.+||+.+. .|.... .+..... -.+++..++++ +++.|+ .+ ..+.+||..+
T Consensus 249 ~~~~~g~-lyv~GG~~~~~v~~yd~~t~-~W~~~~-~~~~~R~-~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t 323 (656)
T 1k3i_A 249 SMDGNGQ-IVVTGGNDAKKTSLYDSSSD-SWIPGP-DMQVARG-YQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSS 323 (656)
T ss_dssp EECTTSC-EEEECSSSTTCEEEEEGGGT-EEEECC-CCSSCCS-SCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTT
T ss_pred cCCCCCC-EEEeCCCCCCceEEecCcCC-ceeECC-CCCcccc-ccceEEecCCe-EEEEeCcccCCcccccceEeCCCC
Confidence 7788887 8888874 558999999763 444321 1211111 12445567787 888888 34 5699999987
Q ss_pred CCceeeEEe-----cCCCCEEEEEEcCCCCcEEEEEeCCC---------eEEEEeCCCCCCCCceEEEeecCC-------
Q 039302 313 GKSALMSFK-----AHNADVNVISWNRLASCLLASGSDDG---------TFSIHDLRLLKGGDSVVAHFEYHK------- 371 (479)
Q Consensus 313 ~~~~~~~~~-----~h~~~v~~l~~~p~~~~~l~sgs~dg---------~i~iwDlr~~~~~~~~~~~~~~h~------- 371 (479)
.. -..+. .....-....+..++ .+++.|+.+| .+..||..... .......+.
T Consensus 324 ~~--W~~~~~~~~~p~~~~~~~~~~~~~~-~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~----w~~~~~~~~~~~~~~~ 396 (656)
T 1k3i_A 324 KT--WTSLPNAKVNPMLTADKQGLYRSDN-HAWLFGWKKGSVFQAGPSTAMNWYYTSGSG----DVKSAGKRQSNRGVAP 396 (656)
T ss_dssp TE--EEEETTSCSGGGCCCCTTGGGTTTC-SCCEEECGGGCEEECCSSSEEEEEECSTTC----EEEEEEECEETTEECC
T ss_pred Cc--ceeCCCccccccccccccceeecCC-ceEEEECCCCcEEEecCccceeeeecCCcc----eeecCCccccccccCC
Confidence 53 11110 000000001122333 4555565443 56788887655 222222111
Q ss_pred --CCeEEEEEeCCCCCEEEEEeCCC-----------cEEEEECCCC
Q 039302 372 --HPVTSIEWSPHEGSTLAVSSADN-----------QLTIWDLSLE 404 (479)
Q Consensus 372 --~~I~~v~~sp~~~~~las~s~Dg-----------~I~iwdl~~~ 404 (479)
..-.++.|...++.+++.|+.++ .|.+||....
T Consensus 397 ~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~ 442 (656)
T 1k3i_A 397 DAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTS 442 (656)
T ss_dssp CCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSC
T ss_pred CCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCC
Confidence 12355666555668888888543 5667776554
No 276
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.55 E-value=0.00047 Score=72.68 Aligned_cols=165 Identities=13% Similarity=0.053 Sum_probs=99.9
Q ss_pred CceEEEEeCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRV 312 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~ 312 (479)
..+.+|+|.+... .|+.+. ..+.|+.+++............+.........|++.+.+.+++++-...+.|.++++..
T Consensus 406 ~~p~gla~d~~~~-~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg 484 (699)
T 1n7d_A 406 RNVVALDTEVASN-RIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 484 (699)
T ss_dssp TTCCCCEEETTTT-EEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSS
T ss_pred cceEEEccccccC-eEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCC
Confidence 3566889988765 555554 46789999886511000000111111223567888876665777766788999999876
Q ss_pred CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCC-CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 313 GKSALMSFKAHNADVNVISWNRLASCLLASGSDD-GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 313 ~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
.. ....+.......+.|+++|.++.++++-... +.|.++++.... ....+...-...+.|+|+|.++.++++-+
T Consensus 485 ~~-~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~----~~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 485 VK-RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD----IYSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CC-EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC----CCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred Cc-eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC----eeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 53 2222222234567889998765666654333 678887775432 11112222334578999998777888877
Q ss_pred CCCcEEEEECCCC
Q 039302 392 ADNQLTIWDLSLE 404 (479)
Q Consensus 392 ~Dg~I~iwdl~~~ 404 (479)
..+.|.++++...
T Consensus 560 ~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 560 KLHSISSIDVNGG 572 (699)
T ss_dssp TTTEEEEECSSSS
T ss_pred CCCeEEEEccCCC
Confidence 8889999998643
No 277
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=0.057 Score=57.58 Aligned_cols=232 Identities=14% Similarity=0.076 Sum_probs=137.4
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec----------CCCCceEEE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG----------GHKDEGYAI 239 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~h~~~v~~l 239 (479)
..|.++...+++. |-.|+.++-|..|+..... ...+. .....|.++
T Consensus 313 ~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~----------------------~~~~~~~~~~~~~~~l~~~~v~~i 368 (781)
T 3v9f_A 313 ASARYIFQDSFNN--IWIGTWGGGINFISNAPPT----------------------FHTWSYSPTQMNESSLSNKVVSSV 368 (781)
T ss_dssp SCEEEEEECSSCC--EEEEEBSSCEEEECSSCCS----------------------CEEEC----CCCSSCCSSSCEEEE
T ss_pred CeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCc----------------------ceeeccCccccccCCCCCcceEEE
Confidence 5688888888773 3345666668888876421 11110 123468888
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeE
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMS 319 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~ 319 (479)
...+++ .|..|+.++-|.+|+..+...... ..........|.++...+++. |-.|+.++-|..+|.++++ ...
T Consensus 369 ~~d~~g--~lWigt~~~Gl~~~~~~~~~~~~~-~~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~--~~~ 441 (781)
T 3v9f_A 369 CDDGQG--KLWIGTDGGGINVFENGKRVAIYN-KENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKK--FQI 441 (781)
T ss_dssp EECTTS--CEEEEEBSSCEEEEETTEEEEECC------CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCE--EEE
T ss_pred EEcCCC--CEEEEeCCCcEEEEECCCCeEEEc-cCCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCc--EEE
Confidence 887765 577777677788998765321110 000112346799999988876 4446666678889887653 222
Q ss_pred Ee---cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC-----CCCeEEEEEeCCCCCEEEEEe
Q 039302 320 FK---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH-----KHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 320 ~~---~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h-----~~~I~~v~~sp~~~~~las~s 391 (479)
+. .....|.++...+++ . |..|+. +.|.+||..+.. ........ ...|.++...+++ .+ ..|+
T Consensus 442 ~~~~~~~~~~v~~i~~d~~g-~-lwigt~-~Gl~~~~~~~~~----~~~~~~~~~~~~~~~~i~~i~~d~~g-~l-Wigt 512 (781)
T 3v9f_A 442 IELEKNELLDVRVFYEDKNK-K-IWIGTH-AGVFVIDLASKK----VIHHYDTSNSQLLENFVRSIAQDSEG-RF-WIGT 512 (781)
T ss_dssp CCSTTTCCCCEEEEEECTTS-E-EEEEET-TEEEEEESSSSS----CCEEECTTTSSCSCSCEEEEEECTTC-CE-EEEE
T ss_pred eccCCCCCCeEEEEEECCCC-C-EEEEEC-CceEEEeCCCCe----EEecccCcccccccceeEEEEEcCCC-CE-EEEE
Confidence 22 134678999988877 4 444555 568899987655 22211111 3578999888754 44 4445
Q ss_pred CCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee-c--CCCCeeeEEEeCCCCcEEEEEcCCCc-eEEee
Q 039302 392 ADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH-Q--GQKDLKELHWHTQVPGMIVSTAADGF-NILMP 467 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h-~--g~~~V~~v~w~p~~~~ll~s~~~dgi-~iw~~ 467 (479)
.++-|..||...... ..+.. . ....|.++...+++. +.+++. +|+ ..|++
T Consensus 513 ~~~Gl~~~~~~~~~~------------------------~~~~~~~~l~~~~i~~i~~d~~g~-lWi~T~-~Glv~~~d~ 566 (781)
T 3v9f_A 513 FGGGVGIYTPDMQLV------------------------RKFNQYEGFCSNTINQIYRSSKGQ-MWLATG-EGLVCFPSA 566 (781)
T ss_dssp SSSCEEEECTTCCEE------------------------EEECTTTTCSCSCEEEEEECTTSC-EEEEET-TEEEEESCT
T ss_pred cCCCEEEEeCCCCeE------------------------EEccCCCCCCCCeeEEEEECCCCC-EEEEEC-CCceEEECC
Confidence 444477788765420 00100 0 113588888888875 555555 666 66654
No 278
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=0.075 Score=52.95 Aligned_cols=207 Identities=11% Similarity=0.026 Sum_probs=118.4
Q ss_pred ceeEEEEecC-CCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC----CCCceEEEEe----
Q 039302 171 CVNRIRAMSQ-NPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG----HKDEGYAIDW---- 241 (479)
Q Consensus 171 ~V~~v~~~p~-~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~---- 241 (479)
....|+|.|. ..+|+++....+.|++.|+.. ..+.++.. .......|+|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~----------------------~~v~~l~~~~~~~~~~p~~ia~~~~~ 197 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN----------------------RMLSSPLNINTIPTNRIRSIAFNKKI 197 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT----------------------TEEEEEECCTTSSCSBEEEEEECCCB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC----------------------CEEEEEEccCccccCCCcEEEEeecc
Confidence 3568899984 446777766667788888776 12222221 1235789999
Q ss_pred ---CCCCCCeEEEEeCCC-------eEEEEecCCCCcccc-C-CCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 242 ---NPVAPGRLVSGDCNS-------CIHLWEPASDATWNV-D-PNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 242 ---s~~~~~~l~sg~~dg-------~I~lwd~~~~~~~~~-~-~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
++++. .|+.++..+ .|.+.+....+.+.. . ...+.. -.....++++|++..++++...++.|..+|
T Consensus 198 ~~~d~~G~-~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 198 EGYADEAE-YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp TTTBCTTC-EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred cccCCCCC-EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 99987 666665544 266665433122210 0 001111 123457788997666888888899999999
Q ss_pred cC-------CCCc-----e-----eeE-E-ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC
Q 039302 310 TR-------VGKS-----A-----LMS-F-KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH 370 (479)
Q Consensus 310 ~~-------~~~~-----~-----~~~-~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h 370 (479)
+. ++.. + ... + .........|+|+|++..++++-+..+.|+.++.............+.+.
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~ 355 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG 355 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence 87 4431 0 111 1 12234467999999994366666778899996653221000001222221
Q ss_pred ---C------------CCeE-EEEEeC------CCCCEEEEEeCCCcEEEEEC
Q 039302 371 ---K------------HPVT-SIEWSP------HEGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 371 ---~------------~~I~-~v~~sp------~~~~~las~s~Dg~I~iwdl 401 (479)
. .... .+.... ..+.++++=...++|+.++.
T Consensus 356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~ 408 (496)
T 3kya_A 356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP 408 (496)
T ss_dssp TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence 0 1233 444441 24467777777889999884
No 279
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=97.50 E-value=0.005 Score=64.54 Aligned_cols=157 Identities=15% Similarity=0.160 Sum_probs=93.8
Q ss_pred EEEeCCCCCCeEEEEeCCC-------------------eEEEEecCCCCc-cccCCCCcccCC-------CcEEEEEECC
Q 039302 238 AIDWNPVAPGRLVSGDCNS-------------------CIHLWEPASDAT-WNVDPNPFIGHA-------ASVEDLQWSP 290 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~dg-------------------~I~lwd~~~~~~-~~~~~~~~~~h~-------~~V~~l~~sp 290 (479)
.+++.+... +++.+..++ .|..+|..+++. |... ...|. .++....+..
T Consensus 234 ~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~---~~~~~~wd~~~~~~~~~~d~~~ 309 (668)
T 1kv9_A 234 SMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQ---VTPGDSWDFTATQQITLAELNI 309 (668)
T ss_dssp CEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEE---SSTTCCSCCCCCSCEEEEEEEE
T ss_pred ceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEee---cCCCccccccCCCCcEEEEecc
Confidence 467777765 888887666 389999988754 2211 11111 2222222222
Q ss_pred CCC--cEEEEEeCCCcEEEEEcCCCCceeeEEecCC------------CCE------------------------EEEEE
Q 039302 291 TES--DVFASCSVDGNIAIWDTRVGKSALMSFKAHN------------ADV------------------------NVISW 332 (479)
Q Consensus 291 ~~~--~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~------------~~v------------------------~~l~~ 332 (479)
+++ ..++.++.+|.+.++|.++++ .+....... .++ ..+++
T Consensus 310 ~G~~~~~v~~~~~~G~l~~lD~~tG~-~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~ 388 (668)
T 1kv9_A 310 DGKPRKVLMQAPKNGFFYVLDRTNGK-LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSF 388 (668)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCC-EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEE
T ss_pred CCcEEEEEEEECCCCEEEEEECCCCC-EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceE
Confidence 342 268889999999999999986 332211100 000 12567
Q ss_pred cCCCCcEEEE-----------------------------------EeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEE
Q 039302 333 NRLASCLLAS-----------------------------------GSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSI 377 (479)
Q Consensus 333 ~p~~~~~l~s-----------------------------------gs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v 377 (479)
+|+.+.+++. ...+|.|..||+++++ .+-.+..+ .++...
T Consensus 389 dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~----~~W~~~~~-~~~~~~ 463 (668)
T 1kv9_A 389 NPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQK----AAWKVPYP-THWNGG 463 (668)
T ss_dssp ETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTE----EEEEEEES-SSCCCC
T ss_pred CCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCc----EEEEccCC-CCCcCc
Confidence 7766333321 1134889999999987 55555543 233333
Q ss_pred EEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 378 EWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 378 ~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+...+ .+++.++.|+.|++||..+++
T Consensus 464 ~~~t~g-g~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 464 TLSTAG-NLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp EEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred eeEeCC-CEEEEECCcccchhhhhhcCh
Confidence 344434 788888999999999998874
No 280
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.31 E-value=0.073 Score=50.16 Aligned_cols=153 Identities=9% Similarity=0.110 Sum_probs=88.5
Q ss_pred CCCCceEEEEeCCCCCCeEEEEeCCCeEEE-EecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEE
Q 039302 231 GHKDEGYAIDWNPVAPGRLVSGDCNSCIHL-WEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWD 309 (479)
Q Consensus 231 ~h~~~v~~l~~s~~~~~~l~sg~~dg~I~l-wd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD 309 (479)
.+...++++++.+.+. +++.+. .|.|.. +|- .+..|... .......+..+.+.+++. ++ .++.+|.+++.+
T Consensus 160 ~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~-gG~tW~~~---~~~~~~~~~~~~~~~~g~-~~-~~~~~G~~~~s~ 231 (327)
T 2xbg_A 160 EAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEP-GQTAWEPH---NRTTSRRLHNMGFTPDGR-LW-MIVNGGKIAFSD 231 (327)
T ss_dssp SCCCCEEEEEECTTSC-EEEEET-TSSEEEEECT-TCSSCEEE---ECCSSSCEEEEEECTTSC-EE-EEETTTEEEEEE
T ss_pred CCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCC-CCCceeEC---CCCCCCccceeEECCCCC-EE-EEeCCceEEEec
Confidence 3445788999999765 555554 555544 332 12334321 123346788999999886 44 455678887764
Q ss_pred cCCCCceeeEEe----cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---cCCCCeEEEEEeCC
Q 039302 310 TRVGKSALMSFK----AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---YHKHPVTSIEWSPH 382 (479)
Q Consensus 310 ~~~~~~~~~~~~----~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---~h~~~I~~v~~sp~ 382 (479)
...+. .-..+. .+...+.++.+.+.+ .++++|. +|.| ++....+. .-..+. .+...+.+|.|.+
T Consensus 232 ~D~G~-tW~~~~~~~~~~~~~~~~v~~~~~~-~~~~~g~-~g~i-~~S~DgG~----tW~~~~~~~~~~~~~~~v~~~~- 302 (327)
T 2xbg_A 232 PDNSE-NWGELLSPLRRNSVGFLDLAYRTPN-EVWLAGG-AGAL-LCSQDGGQ----TWQQDVDVKKVPSNFYKILFFS- 302 (327)
T ss_dssp TTEEE-EECCCBCTTSSCCSCEEEEEESSSS-CEEEEES-TTCE-EEESSTTS----SCEECGGGTTSSSCCCEEEEEE-
T ss_pred CCCCC-eeEeccCCcccCCcceEEEEecCCC-EEEEEeC-CCeE-EEeCCCCc----ccEEcCccCCCCCCeEEEEEEC-
Confidence 32221 111111 123458899999866 6666654 6766 33333333 222232 2345678899975
Q ss_pred CCCEEEEEeCCCcEEEEEC
Q 039302 383 EGSTLAVSSADNQLTIWDL 401 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl 401 (479)
+ ..+++++.+|.|.-++-
T Consensus 303 ~-~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 303 P-DQGFILGQKGILLRYVT 320 (327)
T ss_dssp T-TEEEEECSTTEEEEECC
T ss_pred C-CceEEEcCCceEEEEcC
Confidence 3 45777788998877664
No 281
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.31 E-value=0.21 Score=51.65 Aligned_cols=161 Identities=6% Similarity=-0.107 Sum_probs=107.1
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVG 313 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~ 313 (479)
....+|+|.+.....+++-..++.|..+++.......+ +.........|++.+.+.+++.+-...+.|.+.++...
T Consensus 37 ~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v----~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 37 KEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV----VEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE----ECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred CceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEE----EeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 46789999997763444555678999998865332211 11112356788998877767777777889999998765
Q ss_pred CceeeEEecCCCCEEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 314 KSALMSFKAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 314 ~~~~~~~~~h~~~v~~l~~~p~~~~~l~sg-s~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
. ....+...-.....|++.|..+.++.+- +..+.|...++.... ..... ..-.....|++++.++.++.+-..
T Consensus 113 ~-~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~----~~~l~-~~~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 113 H-RQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE----RTTLV-PNVGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp T-CEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEE-CSCSSEEEEEEETTTTEEEEEETT
T ss_pred c-EEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc----eEEEE-CCCCCcceEEEccccCEEEEEECC
Confidence 3 2222223345578999999664666664 235788888876544 22222 234567899999977566666677
Q ss_pred CCcEEEEECCCC
Q 039302 393 DNQLTIWDLSLE 404 (479)
Q Consensus 393 Dg~I~iwdl~~~ 404 (479)
.+.|...++...
T Consensus 187 ~~~I~~~d~dG~ 198 (628)
T 4a0p_A 187 TNLIESSNMLGL 198 (628)
T ss_dssp TTEEEEEETTSC
T ss_pred CCEEEEEcCCCC
Confidence 889999998654
No 282
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.29 E-value=0.082 Score=54.22 Aligned_cols=54 Identities=19% Similarity=0.132 Sum_probs=36.3
Q ss_pred CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 346 DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 346 dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+|.|.-||+.+++ .+-...... ++..-.....+ .+++.++.|+.|+.||.++++
T Consensus 465 ~G~l~A~D~~tG~----~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~ 518 (582)
T 1flg_A 465 VGSLRAMDPVSGK----VVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGK 518 (582)
T ss_dssp SEEEEEECTTTCC----EEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred cceEEEEECCCCC----EEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCC
Confidence 5789999999987 555554322 22221111123 677779999999999999884
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.28 E-value=0.016 Score=57.22 Aligned_cols=158 Identities=8% Similarity=0.026 Sum_probs=97.1
Q ss_pred ceEEEEeCCC-CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC---Cc-EEEEE
Q 039302 235 EGYAIDWNPV-APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD---GN-IAIWD 309 (479)
Q Consensus 235 ~v~~l~~s~~-~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d---g~-I~iwD 309 (479)
...+|+|.|+ ..+.|..+...+.|+.+++.++.... +.........|+|++++. ++++.... .. +...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~-----~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~ 213 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI-----KTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFT 213 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE-----ECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE-----eecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEE
Confidence 4568999995 33467777666899999986643322 222345689999999998 77766422 11 33333
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe-ec-CCCCeEEEEEeCCCCCEE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF-EY-HKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~-~~-h~~~I~~v~~sp~~~~~l 387 (479)
..........+. .....+.++++|..+.++++-..++.|+.+|..++. ....+ .. ....-..|+|+|++..++
T Consensus 214 ~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~----~~~~~~~~~~~~~~~~ia~dpdG~~LY 288 (433)
T 4hw6_A 214 RASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGT----LTEEEVMMDTKGSNFHIVWHPTGDWAY 288 (433)
T ss_dssp GGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCC----EEEEEEECSCCSSCEEEEECTTSSEEE
T ss_pred CCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCe----EEEEEeccCCCCCcccEEEeCCCCEEE
Confidence 222111011121 234456788999443777777778899999987554 31222 11 122335799999764366
Q ss_pred EEEeCCCcEEEEECCC
Q 039302 388 AVSSADNQLTIWDLSL 403 (479)
Q Consensus 388 as~s~Dg~I~iwdl~~ 403 (479)
++-...++|..+++..
T Consensus 289 vad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 289 IIYNGKHCIYRVDYNR 304 (433)
T ss_dssp EEETTTTEEEEEEBCT
T ss_pred EEeCCCCEEEEEeCCC
Confidence 6666788999988763
No 284
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.28 E-value=0.043 Score=52.42 Aligned_cols=243 Identities=10% Similarity=0.103 Sum_probs=124.1
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC---CC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV---AP 246 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~ 246 (479)
.....++|.|++ .++++ ...|.|++++ ....... ...+ .+.........|+|+|+ +.
T Consensus 31 ~~P~~ia~~pdG-~l~V~-e~~g~I~~i~-~g~~~~~---------------~~~~--v~~~g~~~p~gia~~pdf~~~g 90 (352)
T 2ism_A 31 EVPWALAFLPDG-GMLIA-ERPGRIRLFR-EGRLSTY---------------AELS--VYHRGESGLLGLALHPRFPQEP 90 (352)
T ss_dssp SCEEEEEECTTS-CEEEE-ETTTEEEEEE-TTEEEEE---------------EECC--CCCSTTCSEEEEEECTTTTTSC
T ss_pred CCceEEEEcCCC-eEEEE-eCCCeEEEEE-CCCccEe---------------ecce--EeecCCCCceeEEECCCCCCCC
Confidence 346789999999 56665 5669999998 3210000 0000 11122346789999998 43
Q ss_pred CeEEEEeC-C-----CeEEEEecCCCCc--cccCCC-----CcccCCCcEEEEEECCCCCcEEEEEeC------------
Q 039302 247 GRLVSGDC-N-----SCIHLWEPASDAT--WNVDPN-----PFIGHAASVEDLQWSPTESDVFASCSV------------ 301 (479)
Q Consensus 247 ~~l~sg~~-d-----g~I~lwd~~~~~~--~~~~~~-----~~~~h~~~V~~l~~sp~~~~~l~s~s~------------ 301 (479)
.|..+.. . +.|..++...... ...... .-..|. ...|+|.|++. ++++.+.
T Consensus 91 -~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~ 166 (352)
T 2ism_A 91 -YVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHS--GGRIAFGPDGM-LYVTTGEVYERELAQDLAS 166 (352)
T ss_dssp -EEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCC--CCCEEECTTSC-EEEECCCTTCGGGGGCTTC
T ss_pred -EEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcC--CceEEECCCCC-EEEEECCCCCCccccCCCC
Confidence 4444433 2 5788887754211 000000 111233 35899999997 6666432
Q ss_pred -CCcEEEEEcCCC------------CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCe--------EEEEeCCCCCC-
Q 039302 302 -DGNIAIWDTRVG------------KSALMSFKAHNADVNVISWNRLASCLLASGSDDGT--------FSIHDLRLLKG- 359 (479)
Q Consensus 302 -dg~I~iwD~~~~------------~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~--------i~iwDlr~~~~- 359 (479)
.|.|.-++.... ........++ .....++|+|..+.++++-..... |.+.. .+..
T Consensus 167 ~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~--~G~ny 243 (352)
T 2ism_A 167 LGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIV--PGGNY 243 (352)
T ss_dssp SSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEEC--TTCBC
T ss_pred CceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEec--cCCcC
Confidence 145555555431 0011111223 235778999943366655433333 44332 2210
Q ss_pred -------------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 360 -------------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 360 -------------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
...++..+..| .....++|. .+.++++.-..+.|...++....... ..
T Consensus 244 Gwp~~~g~~~~~~~~~p~~~~~~~-~ap~G~~~~--~G~l~v~~~~~~~v~~v~~~~~~~~~----------------~~ 304 (352)
T 2ism_A 244 GWPRVVGRGNDPRYRDPLYFWPQG-FPPGNLAFF--RGDLYVAGLRGQALLRLVLEGERGRW----------------RV 304 (352)
T ss_dssp CTTTCCSCCCCTTSCCCSEECTTC-CCEEEEEEE--TTEEEEEETTTTEEEEEEEEEETTEE----------------EE
T ss_pred CCCcccCCCCCCCCcCCeEecCCC-CCCcceEEE--CCEEEEEECCCCEEEEEEECCCCcce----------------ee
Confidence 01244455333 355778884 34677766667788887775432100 00
Q ss_pred CCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 427 LPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 427 ~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
.....++ .....+.++++.|++..++++.+.+
T Consensus 305 ~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~~~~ 336 (352)
T 2ism_A 305 LRVETAL--SGFGRLREVQVGPDGALYVTTSNRD 336 (352)
T ss_dssp EEEEEEE--ESSCCEEEEEECTTSCEEEEECSTT
T ss_pred cchheec--ccCCCeeEEEECCCCcEEEEEeCCC
Confidence 0001111 2234699999999996444443433
No 285
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.26 E-value=0.028 Score=57.56 Aligned_cols=55 Identities=15% Similarity=-0.054 Sum_probs=37.2
Q ss_pred CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 345 ~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
.+|.|..||+.+++ .+-.+... .++.+..+...+ .+++.++.|+.|+.||.++++
T Consensus 442 ~~g~l~a~D~~tG~----~~W~~~~~-~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 442 EMGQIRAFDLTTGK----AKWTKWEK-FAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp CCEEEEEECTTTCC----EEEEEEES-SCCCSBCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred CCCeEEEEECCCCC----EEEEecCC-CCccceeEEECC-CEEEEEcCCCeEEEEECCCCC
Confidence 35789999999887 55555432 233332223224 567778999999999998874
No 286
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.24 E-value=0.092 Score=50.14 Aligned_cols=251 Identities=11% Similarity=0.044 Sum_probs=130.5
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEE---ecCCCCceEEEEeCCC-
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVK---FGGHKDEGYAIDWNPV- 244 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~s~~- 244 (479)
-.....++|.|++ .++++ ...|.|++++.... ..+.. +.........|+++|+
T Consensus 28 l~~P~~ia~~pdG-~l~V~-e~~g~I~~~d~~G~---------------------~~~~~~~v~~~g~~g~~gia~~pdf 84 (354)
T 3a9g_A 28 LEVPWSIAPLGGG-RYLVT-ERPGRLVLISPSGK---------------------KLVASFDVANVGEAGLLGLALHPEF 84 (354)
T ss_dssp CSCEEEEEEEETT-EEEEE-ETTTEEEEECSSCE---------------------EEEEECCCCCSTTCSEEEEEECTTT
T ss_pred CCCCeEEEEcCCC-eEEEE-eCCCEEEEEeCCCc---------------------eEeeccceeecCCCceeeEEeCCCC
Confidence 3567899999999 56666 56699999873321 01111 1112346789999997
Q ss_pred --CCCeEEEEeC----C----CeEEEEecCCCC-c---cccCCC---CcccCCCcEEEEEECCCCCcEEEEEeC------
Q 039302 245 --APGRLVSGDC----N----SCIHLWEPASDA-T---WNVDPN---PFIGHAASVEDLQWSPTESDVFASCSV------ 301 (479)
Q Consensus 245 --~~~~l~sg~~----d----g~I~lwd~~~~~-~---~~~~~~---~~~~h~~~V~~l~~sp~~~~~l~s~s~------ 301 (479)
+. .|..+.. + ..|..|+..... . ...... ....|. ...|.|.|++. ++++.+.
T Consensus 85 ~~~g-~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~-Lyvt~G~~~~~~~ 160 (354)
T 3a9g_A 85 PKKS-WVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGM-LYITTGDAADPRL 160 (354)
T ss_dssp TTSC-EEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSC-EEEECCCTTCGGG
T ss_pred CcCC-EEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCc-EEEEECCCCCCcc
Confidence 43 5554433 2 567777765431 0 000000 011232 36799999997 6666442
Q ss_pred -------CCcEEEEEcCCCC-------ceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCC---eEEEEeCCC--------
Q 039302 302 -------DGNIAIWDTRVGK-------SALMSFKAHNADVNVISWNRLASCLLASGSDDG---TFSIHDLRL-------- 356 (479)
Q Consensus 302 -------dg~I~iwD~~~~~-------~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg---~i~iwDlr~-------- 356 (479)
.|.|.-++....- .......++. ....++|+|..+.++++-...+ .|.+...-.
T Consensus 161 ~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~ 239 (354)
T 3a9g_A 161 AQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLAT 239 (354)
T ss_dssp GTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCC
T ss_pred ccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCccc
Confidence 2445555544220 0111123333 3468999994336666543322 244332111
Q ss_pred CCC----CCceEEEeecCCCCeEEEEEeC------CCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCC
Q 039302 357 LKG----GDSVVAHFEYHKHPVTSIEWSP------HEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPED 426 (479)
Q Consensus 357 ~~~----~~~~~~~~~~h~~~I~~v~~sp------~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (479)
... ...++..+.........+.|.. ..+.++++.-..+.|...++......
T Consensus 240 g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~------------------- 300 (354)
T 3a9g_A 240 GKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEV------------------- 300 (354)
T ss_dssp SCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCE-------------------
T ss_pred CCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcc-------------------
Confidence 000 0124444422234677888842 23467777666778888887643110
Q ss_pred CCCceEEeecCCCCeeeEEEeCCCCcEEEEEc-CCCc--------eEEeee
Q 039302 427 LPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA-ADGF--------NILMPS 468 (479)
Q Consensus 427 ~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~-~dgi--------~iw~~~ 468 (479)
.....+.......+.++++.|++. |.++.. .+|. +||++.
T Consensus 301 -~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~~~~G~g~~~~~~g~i~ri~ 349 (354)
T 3a9g_A 301 -RKISTFFKNVFGRLRDVVIDDDGG-ILISTSNRDGRGSLRAGDDKILKIV 349 (354)
T ss_dssp -EEEEEECTTTSCCEEEEEECTTSC-EEEEECTTSSSSCCCTTCSCEEEEE
T ss_pred -cceeeeccCCCCCeeEEEECCCCc-EEEEEeCCCCCcCCCCCCCEEEEEe
Confidence 000011111124689999999995 555553 2331 677764
No 287
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.24 E-value=0.0056 Score=60.44 Aligned_cols=158 Identities=11% Similarity=0.097 Sum_probs=97.5
Q ss_pred ceEEEEeCCC-CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC----cEEEEE
Q 039302 235 EGYAIDWNPV-APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG----NIAIWD 309 (479)
Q Consensus 235 ~v~~l~~s~~-~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg----~I~iwD 309 (479)
....|+|+|. +. .|..++..+.|+.+|+....... +.........|+|++++..++++...++ .+.+++
T Consensus 138 ~P~~lavdp~~~g-~Lyv~d~~~~I~~id~~~~~v~~-----~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHN-HLYLVGEQHPTRLIDFEKEYVST-----VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEE-EEEEEEBTEEEEEEETTTTEEEE-----EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCC-eEEEEeCCCcEEEEECCCCEEEE-----EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEe
Confidence 4568899983 43 67666665889999986643211 2223456889999999984555544333 233344
Q ss_pred cCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec-CCCCeEEEEEeCCCCCEEE
Q 039302 310 TRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY-HKHPVTSIEWSPHEGSTLA 388 (479)
Q Consensus 310 ~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~-h~~~I~~v~~sp~~~~~la 388 (479)
..........+.. ......++++|+++.++++-...+.|..++..... ....+.. .......|+|+|++..+++
T Consensus 212 ~~g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~----~~~~~~~~~~~~P~gia~~pdG~~lyv 286 (430)
T 3tc9_A 212 RESGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE----TTPLFTIQDSGWEFHIQFHPSGNYAYI 286 (430)
T ss_dssp GGGTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE----EEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred CCCceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc----EEEEEEcCCCCcceeEEEcCCCCEEEE
Confidence 3222111122221 23457788999443788887788999999987544 2122221 1234678999997633666
Q ss_pred EEeCCCcEEEEECCC
Q 039302 389 VSSADNQLTIWDLSL 403 (479)
Q Consensus 389 s~s~Dg~I~iwdl~~ 403 (479)
+-...++|..++...
T Consensus 287 ~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 287 VVVNQHYILRSDYDW 301 (430)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EECCCCEEEEEeCCc
Confidence 666788999988753
No 288
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.23 E-value=0.0013 Score=69.21 Aligned_cols=207 Identities=8% Similarity=-0.096 Sum_probs=119.3
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..+..|+|.+.+..|+++-...+.|+.+++...... ......+........+|++.+.+..++
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~-----------------~~~~~~i~~~~~~P~glavD~~~g~LY 468 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----------------SSYDTVISRDIQAPDGLAVDWIHSNIY 468 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC------------------CCCCCBCCSCC--CCCEECCCSSSBCE
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCC-----------------cceEEEEeCCCCCcceEEEEeeCCcEE
Confidence 456678888866566666556678888887641000 000011111112344677775554355
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEEecCCCCEE
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIAIWDTRVGKSALMSFKAHNADVN 328 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~~~h~~~v~ 328 (479)
++-...+.|.++++.......+ +.........|+++|.+..++++-... +.|..+++.... ....+...-...+
T Consensus 469 ~tD~~~~~I~v~d~dg~~~~~l----~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~-~~~l~~~~l~~Pn 543 (699)
T 1n7d_A 469 WTDSVLGTVSVADTKGVKRKTL----FREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD-IYSLVTENIQWPN 543 (699)
T ss_dssp ECCTTTSCEEEEBSSSCCEEEE----CCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCC-CCEESCSSCSSCC
T ss_pred EEeccCCeEEEEecCCCceEEE----EeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCC-eeEEEeCCCCCcc
Confidence 5555678899999865332211 111123457889999776456554333 778888776432 1111122233467
Q ss_pred EEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee--cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 329 VISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE--YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~--~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
.|+|+|.+..++++-+..+.|.++|+.... ....+. ........|++.. ..++++....+.|..++...+
T Consensus 544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~----~~~~~~~~~~~~~P~glavd~--~~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 544 GITLDLLSGRLYWVDSKLHSISSIDVNGGN----RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp CEEECTTTCCEEEEETTTTEEEEECSSSSC----CEEECCCSSSCSSCCCCEEET--TEEEEECSTTTCEEEEETTTE
T ss_pred EEEEeccCCEEEEEecCCCeEEEEccCCCc----eEEEEecCCcCCCceEeEEEC--CEEEEEeCCCCeEEEEEccCC
Confidence 899999876888888888899999987533 122221 1122334566654 367777777889999987654
No 289
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.19 E-value=0.0042 Score=64.99 Aligned_cols=202 Identities=12% Similarity=0.075 Sum_probs=106.6
Q ss_pred cceeEEEEecCCCcEEEEEe-CCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 170 GCVNRIRAMSQNPHICASWA-DTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s-~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
....++++..++ .+++.|+ .++.+.+||..... ...+..+.. ...-.++...+++. +
T Consensus 243 ~~~~~~~~~~~g-~lyv~GG~~~~~v~~yd~~t~~-------------------W~~~~~~~~-~R~~~s~~~~~dg~-i 300 (656)
T 1k3i_A 243 MFCPGISMDGNG-QIVVTGGNDAKKTSLYDSSSDS-------------------WIPGPDMQV-ARGYQSSATMSDGR-V 300 (656)
T ss_dssp CSSCEEEECTTS-CEEEECSSSTTCEEEEEGGGTE-------------------EEECCCCSS-CCSSCEEEECTTSC-E
T ss_pred CccccccCCCCC-CEEEeCCCCCCceEEecCcCCc-------------------eeECCCCCc-cccccceEEecCCe-E
Confidence 334456677777 6777777 45689999987521 111111111 11223455566776 8
Q ss_pred EEEEe-CC-----CeEEEEecCCCCccccCC----CCcccCCCcEEEEEECCCCCcEEEEEeCCC---------cEEEEE
Q 039302 249 LVSGD-CN-----SCIHLWEPASDATWNVDP----NPFIGHAASVEDLQWSPTESDVFASCSVDG---------NIAIWD 309 (479)
Q Consensus 249 l~sg~-~d-----g~I~lwd~~~~~~~~~~~----~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg---------~I~iwD 309 (479)
++.|+ .+ ..+.+||+.+. .|.... .++..... ...+..++. +++.++.+| .+..||
T Consensus 301 yv~GG~~~~~~~~~~~e~yd~~t~-~W~~~~~~~~~p~~~~~~---~~~~~~~~~-iyv~Gg~~g~~~~~~~~~~v~~yd 375 (656)
T 1k3i_A 301 FTIGGSWSGGVFEKNGEVYSPSSK-TWTSLPNAKVNPMLTADK---QGLYRSDNH-AWLFGWKKGSVFQAGPSTAMNWYY 375 (656)
T ss_dssp EEECCCCCSSSCCCCEEEEETTTT-EEEEETTSCSGGGCCCCT---TGGGTTTCS-CCEEECGGGCEEECCSSSEEEEEE
T ss_pred EEEeCcccCCcccccceEeCCCCC-cceeCCCccccccccccc---cceeecCCc-eEEEECCCCcEEEecCccceeeee
Confidence 88887 34 47899999763 343211 01110000 011223333 455555443 567888
Q ss_pred cCCCCceeeEEecC---------CCCEEEEEEcCCCCcEEEEEeCCC-----------eEEEEeCCCCCCCCceEEEe--
Q 039302 310 TRVGKSALMSFKAH---------NADVNVISWNRLASCLLASGSDDG-----------TFSIHDLRLLKGGDSVVAHF-- 367 (479)
Q Consensus 310 ~~~~~~~~~~~~~h---------~~~v~~l~~~p~~~~~l~sgs~dg-----------~i~iwDlr~~~~~~~~~~~~-- 367 (479)
..+... ......+ ...-.++.|...+..+++.|+.++ .|.+||..+.. .....
T Consensus 376 ~~~~~w-~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~----W~~~~~~ 450 (656)
T 1k3i_A 376 TSGSGD-VKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSP----NTVFASN 450 (656)
T ss_dssp CSTTCE-EEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCC----EEEECTT
T ss_pred cCCcce-eecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCC----eeEEccC
Confidence 877641 1111111 112345555543448888888543 67788877654 22221
Q ss_pred ecCCCC-eEEEEEeCCCCCEEEEEeCC-----------CcEEEEECCCC
Q 039302 368 EYHKHP-VTSIEWSPHEGSTLAVSSAD-----------NQLTIWDLSLE 404 (479)
Q Consensus 368 ~~h~~~-I~~v~~sp~~~~~las~s~D-----------g~I~iwdl~~~ 404 (479)
..+... -.++...|++ .+++.|+.+ ..+.+||....
T Consensus 451 ~mp~~R~~~~~~~l~~g-~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 451 GLYFARTFHTSVVLPDG-STFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp CCSSCCBSCEEEECTTS-CEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred CCCCCcccCCeEECCCC-CEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 112222 2344556744 888988864 46889998654
No 290
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.17 E-value=0.29 Score=50.57 Aligned_cols=203 Identities=6% Similarity=-0.106 Sum_probs=129.9
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
-..+..|.|.+.+..++.+-..++.|+.+++... .....+........+|++.+.+..+
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~---------------------~~~~v~~~g~~~P~GlAvD~~~~~L 94 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGS---------------------ALEHVVEFGLDYPEGMAVDWLGKNL 94 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------------------SCEEEECSSCSCCCEEEEETTTTEE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCC---------------------CcEEEEeCCCCCcceEEEEeCCCEE
Confidence 3467899999987788888778899999988751 1112222111234456665555424
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEE-eCCCcEEEEEcCCCCceeeEEecCCCCE
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASC-SVDGNIAIWDTRVGKSALMSFKAHNADV 327 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~-s~dg~I~iwD~~~~~~~~~~~~~h~~~v 327 (479)
+++-...+.|.+.++.......+ ....-....+|++.|....++.+- +..+.|...++.... ...+...-...
T Consensus 95 Y~tD~~~~~I~v~~~dG~~~~~l----~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~--~~~l~~~~~~P 168 (628)
T 4a0p_A 95 YWADTGTNRIEVSKLDGQHRQVL----VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE--RTTLVPNVGRA 168 (628)
T ss_dssp EEEETTTTEEEEEETTSTTCEEE----ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--CEEEECSCSSE
T ss_pred EEEECCCCEEEEEecCCCcEEEE----EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc--eEEEECCCCCc
Confidence 45555577899999865332111 112234578999999766455554 235678888877553 22222344568
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
+.|++++.+..++++-...+.|..+|+..... ..+.........|++.. +.++.+-...+.|...|..++.
T Consensus 169 ~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-----~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~ 239 (628)
T 4a0p_A 169 NGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-----EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQ 239 (628)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----EEEEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTCC
T ss_pred ceEEEccccCEEEEEECCCCEEEEEcCCCCce-----EEeeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCCC
Confidence 99999998757777777888999999976442 22333334456788875 3677776678899998876553
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.15 E-value=0.12 Score=53.43 Aligned_cols=163 Identities=9% Similarity=-0.033 Sum_probs=104.5
Q ss_pred CCceEEEEeCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcC
Q 039302 233 KDEGYAIDWNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTR 311 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~ 311 (479)
-....+|+|++.+. .|..++ ..+.|..+++....... ..+..-......|++.+.+.+++++-...+.|.+.++.
T Consensus 39 ~~~~~~ld~~~~~~-~ly~sD~~~~~I~r~~~~g~~~~~---~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~d 114 (619)
T 3s94_A 39 LEDAAAVDFVFSHG-LIYWSDVSEEAIKRTEFNKTESVQ---NVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLD 114 (619)
T ss_dssp CSCEEEEEEETTTT-EEEEEETTTTEEEEEEC-----CE---EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEEEeCCC-EEEEEECCCCeEEEEEccCCCceE---EEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECC
Confidence 34678999999776 555544 46789888886542111 11111224688999999777677777788999999998
Q ss_pred CCCceeeEEecCCCCEEEEEEcCCCCcEEEEEe-CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 312 VGKSALMSFKAHNADVNVISWNRLASCLLASGS-DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 312 ~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs-~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
... ....+...-.....|++.|.++.++.+-- ..+.|...++.... ........-...+.|++++.++.++.+=
T Consensus 115 G~~-~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~----~~~l~~~~~~~P~Glald~~~~~LY~aD 189 (619)
T 3s94_A 115 GSL-RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS----RFIIINSEIYWPNGLTLDYEEQKLYWAD 189 (619)
T ss_dssp SCS-CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS----CEEEECSSCSSEEEEEEETTTTEEEEEE
T ss_pred CCC-EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc----eEEEEeCCCCCCcEEEEEccCCEEEEEe
Confidence 653 22222233445678999997646666652 24677777765433 2222222345678999999776677776
Q ss_pred eCCCcEEEEECCCC
Q 039302 391 SADNQLTIWDLSLE 404 (479)
Q Consensus 391 s~Dg~I~iwdl~~~ 404 (479)
+..+.|...++...
T Consensus 190 ~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 190 AKLNFIHKSNLDGT 203 (619)
T ss_dssp TTTCCEEEESSSCC
T ss_pred CCCCeEEEecCCCC
Confidence 77888999988654
No 292
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=97.13 E-value=0.066 Score=54.84 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=36.8
Q ss_pred cEEEEEcCCCCceeeEEec--CC--------CCEEEEEEcCCCC--cEEEEEeCCCeEEEEeCCCCCCCCceEEEee
Q 039302 304 NIAIWDTRVGKSALMSFKA--HN--------ADVNVISWNRLAS--CLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368 (479)
Q Consensus 304 ~I~iwD~~~~~~~~~~~~~--h~--------~~v~~l~~~p~~~--~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~ 368 (479)
.|..+|.++++ .+-.+.. |. .++ .+....++. .+++.++.+|.+.++|..+++ .+..+.
T Consensus 273 ~v~Ald~~tG~-~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~----~~w~~~ 343 (571)
T 2ad6_A 273 TIWGRDLDTGM-AKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPLLSHIDRNGILYTLNRENGN----LIVAEK 343 (571)
T ss_dssp EEEEEETTTCC-EEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEEEEEECTTSEEEEEETTTCC----EEEEEE
T ss_pred EEEEEecCCCc-EEEEecCCCCcccccccCCCCE-EEecccCCcEEEEEEEeCCCcEEEEEECCCCC----EEeeec
Confidence 59999999986 4444432 21 222 122223452 357788999999999999887 555443
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.12 E-value=0.051 Score=50.84 Aligned_cols=166 Identities=13% Similarity=0.135 Sum_probs=106.0
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEe-CCCeEEEEecCCCCccccCCCCcc--cC-CCcEEEEEE---CCCCCcEEEEEe
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGD-CNSCIHLWEPASDATWNVDPNPFI--GH-AASVEDLQW---SPTESDVFASCS 300 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~--~h-~~~V~~l~~---sp~~~~~l~s~s 300 (479)
.+.....---+++|.+... +|..++ ..|+|..|+...+....+...... +. ...+..|.| .|.+. ++++..
T Consensus 7 ~~~~~~~yPE~~~wd~~~g-~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~~ 84 (334)
T 2p9w_A 7 DVKVKNLTPEDTIYDRTRQ-VFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKR-LFAVMK 84 (334)
T ss_dssp EECCTTCCCSCEEEETTTT-EEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCE-EEEEEE
T ss_pred EecCcccCCcCccCcCCCC-EEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCc-EEEEEc
Confidence 3444444556889988765 666666 789999999975433322111111 11 124689999 68866 666533
Q ss_pred -------------CCCcEEEEEcC---CCCceeeEEe--c-----------CCCCEEEEEEcCCCCcEEEEEeCC-CeEE
Q 039302 301 -------------VDGNIAIWDTR---VGKSALMSFK--A-----------HNADVNVISWNRLASCLLASGSDD-GTFS 350 (479)
Q Consensus 301 -------------~dg~I~iwD~~---~~~~~~~~~~--~-----------h~~~v~~l~~~p~~~~~l~sgs~d-g~i~ 350 (479)
.+..|..||+. +++ .+.... . -....+.++..++| +..++++.- +.|.
T Consensus 85 ~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~-~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s~~~~~I~ 162 (334)
T 2p9w_A 85 NAKSFNFADQSSHGASSFHSFNLPLSENSK-PVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFALGMPAIA 162 (334)
T ss_dssp ETTTTCTTSCCSSSCCEEEEEESSCCTTCC-CSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEEESSCEEE
T ss_pred ccccccccccccCCCCEEEEEcCCcCCCCC-EEEEecCccccccccccccccccCCceeEECCCC-CEEEeCCCCCCeEE
Confidence 26779999999 654 232221 1 11248999999999 888888887 8777
Q ss_pred EEeCCCCCCCCceEEEee------cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 351 IHDLRLLKGGDSVVAHFE------YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 351 iwDlr~~~~~~~~~~~~~------~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
..+..... +..+. ......+.|+++|++ .+|++....+.|..+|+..
T Consensus 163 rV~pdG~~-----~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 163 RVSADGKT-----VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EECTTSCC-----EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSS
T ss_pred EEeCCCCE-----EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCC
Confidence 77765332 22221 112236799999966 6666665699999999884
No 294
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.02 E-value=0.2 Score=51.75 Aligned_cols=208 Identities=6% Similarity=-0.107 Sum_probs=124.5
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAP 246 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~ 246 (479)
..-+.+..|.|.+.+..++.+=...+.|..+++... ......+.........|++.+.+.
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~--------------------~~~~~v~~~~~~~P~GlAvD~~~~ 96 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT--------------------ESVQNVVVSGLLSPDGLACDWLGE 96 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------------------------CEEEECSSCSCEEEEEEETTTT
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCC--------------------CceEEEEeCCCCCcCeEEEEecCC
Confidence 334567889999977677777666788888888751 111222322224567788877665
Q ss_pred CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe-CCCcEEEEEcCCCCceeeEEecCCC
Q 039302 247 GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS-VDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 247 ~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s-~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.++++-...+.|.+.++.......+ ....-....+|++.|.+..++.+-- ..+.|...++.... ........-.
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l----~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~-~~~l~~~~~~ 171 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVL----FWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-RFIIINSEIY 171 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEE----ECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS-CEEEECSSCS
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEE----EeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc-eEEEEeCCCC
Confidence 3555555678999999865332111 1122344678999998664555542 24667777776543 2222222345
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..+.|++++.++.++++-...+.|..+|+..... .....+.......|++.. + .++.+-...+.|...|..++.
T Consensus 172 ~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~----~~~~~~~~~~P~gi~~~~-~-~ly~td~~~~~V~~~d~~tg~ 245 (619)
T 3s94_A 172 WPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR----QAVVKGSLPHPFALTLFE-D-ILYWTDWSTHSILACNKYTGE 245 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE----C---------CCCEEESS-S-EEEEECTTTCSEEEEESSSCC
T ss_pred CCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc----EEEEeCCCCCceEEEEeC-C-EEEEecCCCCEEEEEECCCCc
Confidence 6799999998757777777778999999865431 111111112224667764 2 566666668889999987654
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.02 E-value=0.12 Score=48.85 Aligned_cols=202 Identities=12% Similarity=0.173 Sum_probs=116.5
Q ss_pred EEEeCCCCC--CeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC----CCc---EEEEEeC--CCcEE
Q 039302 238 AIDWNPVAP--GRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT----ESD---VFASCSV--DGNIA 306 (479)
Q Consensus 238 ~l~~s~~~~--~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~----~~~---~l~s~s~--dg~I~ 306 (479)
++-.+|..+ .+++.....+-+.+||+ .++... .+. .+.++.+..-|. ++. .+++.-. +++|+
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~----~~~--~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~ 102 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLH----SYN--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIE 102 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEE----EEC--CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEE----Ecc--CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEE
Confidence 344445422 26777777889999999 444322 122 145666666552 221 2344444 68899
Q ss_pred EEEcCCCCceeeEEec------CC-CCEEEEEE--cCCCC-cEEEEEeCCCeEEEEeCCC---CCCCCceEEEeecCCCC
Q 039302 307 IWDTRVGKSALMSFKA------HN-ADVNVISW--NRLAS-CLLASGSDDGTFSIHDLRL---LKGGDSVVAHFEYHKHP 373 (479)
Q Consensus 307 iwD~~~~~~~~~~~~~------h~-~~v~~l~~--~p~~~-~~l~sgs~dg~i~iwDlr~---~~~~~~~~~~~~~h~~~ 373 (479)
+|++......+..+.. .. ..+..+|+ +|... .++++...+|.+..|++.. +......+++|.. ...
T Consensus 103 vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq 181 (355)
T 3amr_A 103 IYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQ 181 (355)
T ss_dssp EEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSC
T ss_pred EEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCC
Confidence 9988422223333311 11 45666777 77543 4677888889999999843 2111236777765 457
Q ss_pred eEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCC---CCeeeEEEe--C
Q 039302 374 VTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQ---KDLKELHWH--T 448 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~---~~V~~v~w~--p 448 (479)
+-.+...+.. ..|..+-++.-|..++..... .....++....+. ..+..|+.- +
T Consensus 182 ~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~--------------------~~~~~~v~~~~~g~l~aDvEGLai~~~~ 240 (355)
T 3amr_A 182 TEGMAADDEY-GRLYIAEEDEAIWKFSAEPDG--------------------GSNGTVIDRADGRHLTRDIEGLTIYYAA 240 (355)
T ss_dssp EEEEEEETTT-TEEEEEETTTEEEEEECSTTS--------------------CSCCEEEEEBSSSSBCSCEEEEEEEECG
T ss_pred cceEEEcCCC-CeEEEecccceEEEEeCCcCC--------------------CCCceEEEEecCCccccCcceEEEEecC
Confidence 8888898855 788888888555444433221 1111333222111 258888884 4
Q ss_pred CCC-cEEEEEcCC-CceEEeee
Q 039302 449 QVP-GMIVSTAAD-GFNILMPS 468 (479)
Q Consensus 449 ~~~-~ll~s~~~d-gi~iw~~~ 468 (479)
++. ++++|+-.+ .+.+|+..
T Consensus 241 ~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 241 DGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp GGCEEEEEEEGGGTEEEEEESS
T ss_pred CCCEEEEEEcCCCCEEEEEECC
Confidence 444 577777444 48888774
No 296
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=96.96 E-value=0.048 Score=51.06 Aligned_cols=206 Identities=9% Similarity=0.047 Sum_probs=117.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC----CC--CceEEEEe-
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG----HK--DEGYAIDW- 241 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~--~~v~~l~~- 241 (479)
..--.+++|.+....++++.-..|+|..|+...... ..+ .+.+ .. ..+.+|.|
T Consensus 12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~-------------------~~~-~~~~~s~~g~~~~~~sGl~~~ 71 (334)
T 2p9w_A 12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSH-------------------FNV-VIDGASSNGDGEQQMSGLSLL 71 (334)
T ss_dssp TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCE-------------------EEE-CCTTTCCSSCCSEEEEEEEES
T ss_pred ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeE-------------------EEE-ecCCccccCCCcceeeEEEEe
Confidence 334557899887656777655899999999864100 001 1211 11 13579999
Q ss_pred --CCCCCCeEEEEe-------------CCCeEEEEecC---CCCc-cccCCCCcc-c-------CCCcEEEEEECCCCCc
Q 039302 242 --NPVAPGRLVSGD-------------CNSCIHLWEPA---SDAT-WNVDPNPFI-G-------HAASVEDLQWSPTESD 294 (479)
Q Consensus 242 --s~~~~~~l~sg~-------------~dg~I~lwd~~---~~~~-~~~~~~~~~-~-------h~~~V~~l~~sp~~~~ 294 (479)
.|.+. ++++.. .+..|..+|+. +++. +........ + -....++++..++|+
T Consensus 72 ~~D~~gr-L~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn- 149 (334)
T 2p9w_A 72 THDNSKR-LFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN- 149 (334)
T ss_dssp SSSSCCE-EEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-
T ss_pred ccCCCCc-EEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-
Confidence 57753 444433 15789999998 4433 221111000 0 113589999999998
Q ss_pred EEEEEeCC-CcEEEEEcCCCCceeeEE------ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe
Q 039302 295 VFASCSVD-GNIAIWDTRVGKSALMSF------KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF 367 (479)
Q Consensus 295 ~l~s~s~d-g~I~iwD~~~~~~~~~~~------~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~ 367 (479)
..++++.- +.|...+..... +..+ .......+.|+++|++ .+|++....|.|..+|++.... .++. .
T Consensus 150 aYVt~s~~~~~I~rV~pdG~~--~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~fD~~~pv~--~~v~-~ 223 (334)
T 2p9w_A 150 SYVAFALGMPAIARVSADGKT--VSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTAFDVSKPYA--WPEP-V 223 (334)
T ss_dssp EEEEEEESSCEEEEECTTSCC--EEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEEEECSSSSC--CCEE-C
T ss_pred EEEeCCCCCCeEEEEeCCCCE--EeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEEEcCCCCcc--eeec-c
Confidence 88888877 777766665432 2221 1122347899999999 5555555599999999984321 0122 2
Q ss_pred e--cC---CCCeEEE-EEeCCCCCE-EEEEeCCCcEEEEECCC
Q 039302 368 E--YH---KHPVTSI-EWSPHEGST-LAVSSADNQLTIWDLSL 403 (479)
Q Consensus 368 ~--~h---~~~I~~v-~~sp~~~~~-las~s~Dg~I~iwdl~~ 403 (479)
. +. -.....| .--. ++.+ |++.+..+.+.+.+-..
T Consensus 224 ~~~G~~~~~~~~dgilp~~~-~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 224 KINGDFGTLSGTEKIVTVPV-GNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EESSCCCCCTTEEEEEEEEE-TTEEEEEEEETTEEEEEECSST
T ss_pred cccCCcccccCccccccccc-CCEEEEEEcCCCCEEEEECCCC
Confidence 1 21 1223343 2222 3355 56666666666655444
No 297
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.94 E-value=0.13 Score=49.07 Aligned_cols=204 Identities=11% Similarity=0.028 Sum_probs=112.1
Q ss_pred EEecC-CcceeEEEEecCCCcEEEEE------------eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec
Q 039302 164 RKVAH-QGCVNRIRAMSQNPHICASW------------ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG 230 (479)
Q Consensus 164 ~~~~H-~~~V~~v~~~p~~~~~lat~------------s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (479)
+.+.. ....-.+...|+| .+++++ ..+|.|.++|........ +.+ .+.
T Consensus 43 ~~i~~~~~G~EDi~~~~~G-~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-----------------~~l-~~~ 103 (355)
T 3sre_A 43 NLVKGIDNGSEDLEILPNG-LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-----------------SEL-EII 103 (355)
T ss_dssp EECTTCCSCCCEEEECTTS-EEEEEECCC-----------CCEEEEEETTSSSCCE-----------------EEC-EEE
T ss_pred EEeCCCCCCcceeEEcCCC-eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-----------------EEE-Ecc
Confidence 44433 3345666778876 444443 168999999987421111 111 122
Q ss_pred C-----CCCceEEEEeCCC--CCCeEEEEe-C--CCeEEEEecCCCCccccCCCCcccC-CCcEEEEEECCCCCcEEEEE
Q 039302 231 G-----HKDEGYAIDWNPV--APGRLVSGD-C--NSCIHLWEPASDATWNVDPNPFIGH-AASVEDLQWSPTESDVFASC 299 (479)
Q Consensus 231 ~-----h~~~v~~l~~s~~--~~~~l~sg~-~--dg~I~lwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~l~s~ 299 (479)
+ ..-....|++.++ +..+|+.+. . +.+|.+|++...+........+.+. -...+++.+.++|. ++++.
T Consensus 104 g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~ 182 (355)
T 3sre_A 104 GNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATN 182 (355)
T ss_dssp CSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEE
T ss_pred CCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecC
Confidence 2 1235566666553 333455553 2 4688888876543322112222222 24689999999987 55554
Q ss_pred eC-----------------CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCc
Q 039302 300 SV-----------------DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDS 362 (479)
Q Consensus 300 s~-----------------dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~ 362 (479)
.. .|.|.-+|. ++ +..+...-..-|.|+|+|++..++++-+..+.|..|++..... ..
T Consensus 183 ~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~--~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~-l~ 257 (355)
T 3sre_A 183 DHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND--VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWT-LT 257 (355)
T ss_dssp SCSCSSHHHHHHHHHTTCCCEEEEEECT--TC--CEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSC-EE
T ss_pred CcEeCCcccccchhhccCCccEEEEEEC--Ce--EEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCc-Ee
Confidence 31 234544544 22 2222223345799999999966777777789999999874221 11
Q ss_pred eEEEeecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 363 VVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 363 ~~~~~~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
....+ ...+..-.+++.+.++++.+++..+
T Consensus 258 ~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~ 287 (355)
T 3sre_A 258 PLRVL-SFDTLVDNISVDPVTGDLWVGCHPN 287 (355)
T ss_dssp EEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred cCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence 22233 2245567788887323666655533
No 298
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=96.81 E-value=0.22 Score=51.17 Aligned_cols=55 Identities=9% Similarity=-0.104 Sum_probs=35.2
Q ss_pred CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCC
Q 039302 345 DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 345 ~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
..|.|.-||+.+++ .+-.... ..++.+-.....+ .+++.++.|+.|+.||.++++
T Consensus 451 ~~G~l~A~D~~tG~----~~W~~~~-~~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 451 GLGQIKAYNAITGD----YKWEKME-RFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp CCEEEEEECTTTCC----EEEEEEE-SSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCC
T ss_pred CcCeEEEEECCCCC----EEeEecC-CCCccCcceEecC-CEEEEECCCCeEEEEECCCCC
Confidence 34788889998887 4554432 1222211111123 677779999999999999884
No 299
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=96.77 E-value=0.27 Score=46.39 Aligned_cols=194 Identities=12% Similarity=0.156 Sum_probs=113.0
Q ss_pred CcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC----CCC--e-EEEEeC
Q 039302 182 PHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV----APG--R-LVSGDC 254 (479)
Q Consensus 182 ~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~----~~~--~-l~sg~~ 254 (479)
..+|+| ...+-+.+||+.. +.+..+.. +.++.++.-|. +.. + +++.-.
T Consensus 41 s~ii~t-~k~~gL~Vydl~G----------------------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~ 95 (355)
T 3amr_A 41 SKLITT-NKKSGLVVYSLDG----------------------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRS 95 (355)
T ss_dssp CEEEEE-ETTTEEEEEETTS----------------------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECS
T ss_pred cEEEEE-cCCCCEEEEcCCC----------------------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCC
Confidence 345555 6678899999953 55565543 45566665552 110 2 233333
Q ss_pred --CCeEEEEecCCC-CccccCCC---CcccCCCcEEEEEE--CCC-CCcEEEEEeCCCcEEEEEcCC---CC---ceeeE
Q 039302 255 --NSCIHLWEPASD-ATWNVDPN---PFIGHAASVEDLQW--SPT-ESDVFASCSVDGNIAIWDTRV---GK---SALMS 319 (479)
Q Consensus 255 --dg~I~lwd~~~~-~~~~~~~~---~~~~h~~~V~~l~~--sp~-~~~~l~s~s~dg~I~iwD~~~---~~---~~~~~ 319 (479)
+++|++|++... ........ ++..-...+..+++ +|. +..++++...+|.+..|++.. +. ..+.+
T Consensus 96 ~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~ 175 (355)
T 3amr_A 96 EGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRA 175 (355)
T ss_dssp TTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEE
T ss_pred CCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEE
Confidence 579999977421 12111111 11111145666777 774 444677778889999999843 21 13444
Q ss_pred EecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCC-CceEEEee-cC-CCCeEEEEEe--CCCCCEEEEEe-CC
Q 039302 320 FKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGG-DSVVAHFE-YH-KHPVTSIEWS--PHEGSTLAVSS-AD 393 (479)
Q Consensus 320 ~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~-~~~~~~~~-~h-~~~I~~v~~s--p~~~~~las~s-~D 393 (479)
+.. ...+-.|...+.. ..|..+-.+..|..+|.+-.... ...+..+. ++ ...+..|++- +++..+|+++| .+
T Consensus 176 f~l-gsq~EgcvvDd~~-g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~ 253 (355)
T 3amr_A 176 FKM-NSQTEGMAADDEY-GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN 253 (355)
T ss_dssp EEC-SSCEEEEEEETTT-TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred ecC-CCCcceEEEcCCC-CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence 443 4578888999877 67888888877777775532210 12444442 22 2468888884 33323555555 57
Q ss_pred CcEEEEECC
Q 039302 394 NQLTIWDLS 402 (479)
Q Consensus 394 g~I~iwdl~ 402 (479)
+++.+||..
T Consensus 254 ~s~~Vydr~ 262 (355)
T 3amr_A 254 SSYAIYDRQ 262 (355)
T ss_dssp TEEEEEESS
T ss_pred CEEEEEECC
Confidence 899999996
No 300
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.66 E-value=0.42 Score=45.46 Aligned_cols=254 Identities=11% Similarity=0.095 Sum_probs=128.0
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC---CC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV---AP 246 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~---~~ 246 (479)
.....|+|.|++..++++ ...|.|++++........ . ...+ ..+.........|+|+|+ +.
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~g~~~~~--~------------~~~~-~v~~~g~~g~~gia~~pdf~~~g 81 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAGKGLSAP--L------------SGVP-DVWAHGQGGLLDVVLAPDFAQSR 81 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETTTEECCC--C------------BSCC-CCCCSTTCSEEEEEECTTHHHHC
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCCCceeeE--e------------cCCc-ccccCCCCCceeEEECCCCCCCC
Confidence 456889999999426655 567999999854311000 0 0000 011112335689999996 33
Q ss_pred CeEEEEe-C-------CCeEEEEecCCCCc----cc--cCCCC---cccCCCcEEEEEECCCCCcEEEEEeC--------
Q 039302 247 GRLVSGD-C-------NSCIHLWEPASDAT----WN--VDPNP---FIGHAASVEDLQWSPTESDVFASCSV-------- 301 (479)
Q Consensus 247 ~~l~sg~-~-------dg~I~lwd~~~~~~----~~--~~~~~---~~~h~~~V~~l~~sp~~~~~l~s~s~-------- 301 (479)
.|..+. . ...|..|++..... .. ..... ...|. ...|.|.|++. ++++.+.
T Consensus 82 -~lYv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~-Lyv~~Gd~~~~~~~q 157 (353)
T 2g8s_A 82 -RIWLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY-LFIALGENNQRPTAQ 157 (353)
T ss_dssp -EEEEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE-EEEEECCTTCGGGGG
T ss_pred -EEEEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc-EEEEECCCCCCCccC
Confidence 444442 2 23566666643211 00 00111 12232 35799999996 6666543
Q ss_pred -----CCcEEEEEcCCCC-----------ceeeEE-ecCCCCEEEEEEcCCCCcEEEEEeC-CCeEEEEeCCCCCC----
Q 039302 302 -----DGNIAIWDTRVGK-----------SALMSF-KAHNADVNVISWNRLASCLLASGSD-DGTFSIHDLRLLKG---- 359 (479)
Q Consensus 302 -----dg~I~iwD~~~~~-----------~~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs~-dg~i~iwDlr~~~~---- 359 (479)
.|.|.-++....- .....+ .++ .....++|+|..+.++++-.. ++.=.|.-+..+..
T Consensus 158 ~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp 236 (353)
T 2g8s_A 158 DLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWP 236 (353)
T ss_dssp CTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTT
T ss_pred CCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCC
Confidence 2456666665320 001112 233 346889999943255554322 21112222211110
Q ss_pred -----------------------CCceEEEeecCCCCeEEEEEeCC------CCCEEEEEeCCCcEEEEECCCCCChHHH
Q 039302 360 -----------------------GDSVVAHFEYHKHPVTSIEWSPH------EGSTLAVSSADNQLTIWDLSLEKDEEEE 410 (479)
Q Consensus 360 -----------------------~~~~~~~~~~h~~~I~~v~~sp~------~~~~las~s~Dg~I~iwdl~~~~~~~~~ 410 (479)
...++..+..| ..+..+.|... .+.+|++.-..+.|...++......
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~--- 312 (353)
T 2g8s_A 237 LATWGINYSGFKIPEAKGEIVAGTEQPVFYWKDS-PAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVT--- 312 (353)
T ss_dssp TBCSSBCTTSSCCTTCCBSSCTTSCCCSEEESSC-CCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEE---
T ss_pred CccCCCCCCCCccCcccCCCCCCccCCeEEeCCC-cCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEe---
Confidence 01234444433 46678888642 2467777667788887777632100
Q ss_pred HHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEc-CCCceEEeee
Q 039302 411 AEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTA-ADGFNILMPS 468 (479)
Q Consensus 411 ~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~-~dgi~iw~~~ 468 (479)
....+.......+.+|++.|++. |.+++. .+| +||++.
T Consensus 313 ------------------~~~~~~~~~~~rp~~v~~~pdG~-lyv~td~~~g-~I~ri~ 351 (353)
T 2g8s_A 313 ------------------EDGRILTDRGQRIRDVRTGPDGY-LYVLTDESSG-ELLKVS 351 (353)
T ss_dssp ------------------EEEEESGGGCCCEEEEEECTTSC-EEEEECSTTE-EEEEEE
T ss_pred ------------------eeEEcccCCCCceeEEEECCCCc-EEEEEeCCCC-EEEEEe
Confidence 00111111123699999999997 555433 333 777764
No 301
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.61 E-value=0.039 Score=55.03 Aligned_cols=164 Identities=10% Similarity=-0.000 Sum_probs=97.0
Q ss_pred ceEEEEeCCC-CCCeEEEEe-CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEE-------CCCCCcEEEEEeCCCc-
Q 039302 235 EGYAIDWNPV-APGRLVSGD-CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQW-------SPTESDVFASCSVDGN- 304 (479)
Q Consensus 235 ~v~~l~~s~~-~~~~l~sg~-~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~-------sp~~~~~l~s~s~dg~- 304 (479)
....|+|.|. .. .|..+. ..+.|++.|+..+....+ ...-.........|+| ++++..++++...++.
T Consensus 140 ~p~~la~dp~~~~-~Lyv~~~~~~~i~~ID~~~~~v~~l-~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~ 217 (496)
T 3kya_A 140 DNGRLAFDPLNKD-HLYICYDGHKAIQLIDLKNRMLSSP-LNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG 217 (496)
T ss_dssp SEEEEEEETTEEE-EEEEEEETEEEEEEEETTTTEEEEE-ECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred CCCEEEEccCCCC-EEEEEECCCCeEEEEECCCCEEEEE-EccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence 4678999984 43 455444 446788888876433221 1111112346899999 9999845555444322
Q ss_pred -----EEEEEcCCCCcee-----eEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCC-------CCCCC-------
Q 039302 305 -----IAIWDTRVGKSAL-----MSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLR-------LLKGG------- 360 (479)
Q Consensus 305 -----I~iwD~~~~~~~~-----~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr-------~~~~~------- 360 (479)
|.+++........ ..+... ...+.++++|.++.++++-..++.|..+|+. +....
T Consensus 218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 218 DESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred ccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 6666633311111 222222 2346778899665888888889999999987 33310
Q ss_pred ---CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 361 ---DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 361 ---~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...+... +.....+.|+|+|++..++++-+..++|+.+++.
T Consensus 297 ~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 297 PNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp TTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 0012222 2234568999999763356666677889986654
No 302
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.59 E-value=0.13 Score=49.01 Aligned_cols=159 Identities=8% Similarity=-0.000 Sum_probs=91.3
Q ss_pred ceEEEEeCCCCCCeEEEEe-------------CCCeEEEEecCCCCc--cccCCCC--cccCCCcEEEEEECC--CCCc-
Q 039302 235 EGYAIDWNPVAPGRLVSGD-------------CNSCIHLWEPASDAT--WNVDPNP--FIGHAASVEDLQWSP--TESD- 294 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~-------------~dg~I~lwd~~~~~~--~~~~~~~--~~~h~~~V~~l~~sp--~~~~- 294 (479)
..-.++..|++ ++++++ .+|.|.++|+.+... ....... +.........|.+.+ ++..
T Consensus 51 G~EDi~~~~~G--~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~ 128 (355)
T 3sre_A 51 GSEDLEILPNG--LAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVY 128 (355)
T ss_dssp CCCEEEECTTS--EEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEE
T ss_pred CcceeEEcCCC--eEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEE
Confidence 34567777765 455554 699999999974321 1110010 111234566777755 3432
Q ss_pred EEEEEeC--CCcEEEEEcCCCCce---eeEEecC-CCCEEEEEEcCCCCcEEEEEe-----------------CCCeEEE
Q 039302 295 VFASCSV--DGNIAIWDTRVGKSA---LMSFKAH-NADVNVISWNRLASCLLASGS-----------------DDGTFSI 351 (479)
Q Consensus 295 ~l~s~s~--dg~I~iwD~~~~~~~---~~~~~~h-~~~v~~l~~~p~~~~~l~sgs-----------------~dg~i~i 351 (479)
++++-.. +.+|.+|++...... +..+.+. -...|.+.+.+++ .++++.. ..|.|..
T Consensus 129 L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G-~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 129 LLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPE-HFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETT-EEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCC-CEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 4444333 567888887654322 2222221 2457999999998 7777654 1245655
Q ss_pred EeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 352 HDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 352 wDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
+|.. + ......+ -..-+.|+|+|++..++++-+..++|..|++..
T Consensus 208 ~d~~--~----~~~~~~~-l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 208 YSPN--D----VRVVAEG-FDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp ECTT--C----CEEEEEE-ESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EECC--e----EEEeecC-CcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 6552 2 1222222 234689999997755566666788999999874
No 303
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.58 E-value=0.19 Score=48.58 Aligned_cols=144 Identities=13% Similarity=0.167 Sum_probs=91.4
Q ss_pred eEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-----------e
Q 039302 248 RLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-----------A 316 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-----------~ 316 (479)
.|+.+- ++.||.-++...........+..-.-..|..+..+|+|. ++|..+ +..|.|..+..+.. .
T Consensus 34 ~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q 110 (452)
T 3pbp_A 34 RIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ 110 (452)
T ss_dssp EEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE
T ss_pred EEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccc
Confidence 555555 468888888643332211111000112567799999999 777765 66899998873321 1
Q ss_pred eeEEec------CCCCEEEEEEcCCCC--cEEEEEeCCCeEEEEeCCCCCCCCceEEEee---------cCCCCeEEEEE
Q 039302 317 LMSFKA------HNADVNVISWNRLAS--CLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---------YHKHPVTSIEW 379 (479)
Q Consensus 317 ~~~~~~------h~~~v~~l~~~p~~~--~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---------~h~~~I~~v~~ 379 (479)
...+.- ...+|..+.|+|-+. ..|++-..|+.|++||+..... .|. .+. .+...|.+++|
T Consensus 111 ~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~--~P~-~L~k~~~~fg~d~~~~ev~S~~F 187 (452)
T 3pbp_A 111 IFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE--KPI-VLNKPNNSFGLDARVNDITDLEF 187 (452)
T ss_dssp EEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS--CCE-EESCCCSEEESCSSCCCEEEEEE
T ss_pred eeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC--CCc-chhccccccCCCcccceEEEEEE
Confidence 112322 246799999999763 3888889999999999987331 133 332 23367899999
Q ss_pred eCCCCCEEEEEe--CCCcEEE
Q 039302 380 SPHEGSTLAVSS--ADNQLTI 398 (479)
Q Consensus 380 sp~~~~~las~s--~Dg~I~i 398 (479)
.+ ++-.|...+ ..|-|+-
T Consensus 188 g~-~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 188 SK-DGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CT-TSSCEEEEECTTSCEEEE
T ss_pred cC-CCcEEEEEecCCCCCEEE
Confidence 98 556666655 6777764
No 304
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=96.53 E-value=0.36 Score=45.32 Aligned_cols=160 Identities=11% Similarity=0.079 Sum_probs=90.7
Q ss_pred EecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCC
Q 039302 165 KVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPV 244 (479)
Q Consensus 165 ~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~ 244 (479)
..++...+..+.+.+++ .+++.+...+..+-+|-... ..+.+ -......+..+.+.++
T Consensus 158 ~~~~~~~~~~~~~~~~~-~~~~~g~~G~~~~S~d~gG~-------------------tW~~~--~~~~~~~~~~~~~~~~ 215 (327)
T 2xbg_A 158 VQEAIGVMRNLNRSPSG-EYVAVSSRGSFYSTWEPGQT-------------------AWEPH--NRTTSRRLHNMGFTPD 215 (327)
T ss_dssp ECSCCCCEEEEEECTTS-CEEEEETTSSEEEEECTTCS-------------------SCEEE--ECCSSSCEEEEEECTT
T ss_pred ecCCCcceEEEEEcCCC-cEEEEECCCcEEEEeCCCCC-------------------ceeEC--CCCCCCccceeEECCC
Confidence 34566788899999877 66666544333333342110 12221 1233457888999887
Q ss_pred CCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe---
Q 039302 245 APGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK--- 321 (479)
Q Consensus 245 ~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~--- 321 (479)
+. ++.++.+|.+++.....+..|......-..+...+.++.+.+++. +++++ .+|.| ++....++ .-..+.
T Consensus 216 g~--~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~-~~~~g-~~g~i-~~S~DgG~-tW~~~~~~~ 289 (327)
T 2xbg_A 216 GR--LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE-VWLAG-GAGAL-LCSQDGGQ-TWQQDVDVK 289 (327)
T ss_dssp SC--EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC-EEEEE-STTCE-EEESSTTS-SCEECGGGT
T ss_pred CC--EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE-EEEEe-CCCeE-EEeCCCCc-ccEEcCccC
Confidence 64 455566888887743323334321111011234589999998766 55554 47776 34444443 222222
Q ss_pred cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeC
Q 039302 322 AHNADVNVISWNRLASCLLASGSDDGTFSIHDL 354 (479)
Q Consensus 322 ~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDl 354 (479)
.....+.++.|.+.+ .+++++.+|.|.-++-
T Consensus 290 ~~~~~~~~v~~~~~~--~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 290 KVPSNFYKILFFSPD--QGFILGQKGILLRYVT 320 (327)
T ss_dssp TSSSCCCEEEEEETT--EEEEECSTTEEEEECC
T ss_pred CCCCCeEEEEEECCC--ceEEEcCCceEEEEcC
Confidence 124567888887544 4666678898877764
No 305
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.52 E-value=0.52 Score=43.86 Aligned_cols=203 Identities=15% Similarity=0.134 Sum_probs=125.4
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC----CceEEEEeCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK----DEGYAIDWNPV 244 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~s~~ 244 (479)
...|.-=+|-... .|+--+ +..|+-|++.. ...|...|..|. ..|.....+++
T Consensus 106 ~e~VvfWkWis~~--~L~lVT-~taVyHWs~~~--------------------~s~P~kvFdR~~~L~~~QIInY~~d~~ 162 (365)
T 2xzh_A 106 TDDVTFWKWISLN--TVALVT-DNAVYHWSMEG--------------------ESQPVKMFDRHSSLAGCQIINYRTDAK 162 (365)
T ss_dssp SSCEEEEEECSSS--EEEEEE-SSEEEEEESST--------------------TCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred CCccEEEEecCCC--eEEEEc-CCcEEEEcccC--------------------CCCCceeeecchhcccceEEEEEECCC
Confidence 3455555555544 333323 35699999876 256667776654 36777777887
Q ss_pred CCCeEEEEe------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECC--CCCcEEEEEeCC---CcEEEEEcCCC
Q 039302 245 APGRLVSGD------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSP--TESDVFASCSVD---GNIAIWDTRVG 313 (479)
Q Consensus 245 ~~~~l~sg~------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp--~~~~~l~s~s~d---g~I~iwD~~~~ 313 (479)
.+-.+++|- -.|.+.||..+.... +.+.+|.+.-..+...- ....+|+.+... +.++|-++...
T Consensus 163 ~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~ 237 (365)
T 2xzh_A 163 QKWLLLTGISAQQNRVVGAMQLYSVDRKVS-----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 237 (365)
T ss_dssp SCEEEEEEEEEETTEEEEEEEEEETTTTEE-----EEECCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSC
T ss_pred CCEEEEEeEeccCCccceeEEEEeeccccc-----ceeeeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 773344442 247889999866432 55778866554444321 112244444432 58999998543
Q ss_pred ---Cce-----eeEE---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 314 ---KSA-----LMSF---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 314 ---~~~-----~~~~---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
..+ +..+ .+..+---++..++.. .++..-+.-|.|++||+.++. ++..-+-...+|-.-+-+..
T Consensus 238 ~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ky-gviyviTK~G~ihlyDleTgt----~i~~nrIS~d~iF~ta~~~~ 312 (365)
T 2xzh_A 238 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT----CIYMNRISGETIFVTAPHEA 312 (365)
T ss_dssp CTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEEGG
T ss_pred CCCCCCcccccceeeCCccccCCceEEEEecccC-CEEEEEeCCcEEEEEEcccCc----EEEEeccCCCceEEecccCC
Confidence 111 1111 1123334567777766 677778899999999999998 78887777788876666554
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
. .=++.....|.|.--.++...
T Consensus 313 ~-~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 313 T-AGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp G-TEEEEEETTCEEEEEEECTTT
T ss_pred C-CcEEEEcCCCEEEEEEECccc
Confidence 4 334455588888877776553
No 306
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.42 E-value=0.44 Score=46.07 Aligned_cols=114 Identities=11% Similarity=0.143 Sum_probs=76.4
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc--------CCCCcc------cCCCcEEEEEECCCCCc--EEEE
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV--------DPNPFI------GHAASVEDLQWSPTESD--VFAS 298 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~--------~~~~~~------~h~~~V~~l~~sp~~~~--~l~s 298 (479)
.+..+..||+|. +||..+ +..|.|-.+..+..... ..+.+. ....+|..+.|||-+.+ .|++
T Consensus 67 ~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 67 DTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred ceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 678899999997 777776 66899988873321000 000111 12578999999997654 8999
Q ss_pred EeCCCcEEEEEcCCCC-ceeeEE---------ecCCCCEEEEEEcCCCCcEEEEE--eCCCeEEEE
Q 039302 299 CSVDGNIAIWDTRVGK-SALMSF---------KAHNADVNVISWNRLASCLLASG--SDDGTFSIH 352 (479)
Q Consensus 299 ~s~dg~I~iwD~~~~~-~~~~~~---------~~h~~~v~~l~~~p~~~~~l~sg--s~dg~i~iw 352 (479)
-..|++|++||+.... .+. .+ ......|.+++|..++ -.|... +..|-|+-.
T Consensus 145 LtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~-lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 145 LKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDG-LTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTS-SCEEEEECTTSCEEEEE
T ss_pred EecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCC-cEEEEEecCCCCCEEEE
Confidence 9999999999998632 122 22 1233678999999966 555554 477877643
No 307
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.33 E-value=1.8 Score=48.06 Aligned_cols=144 Identities=6% Similarity=0.066 Sum_probs=85.9
Q ss_pred CeEEEEe----------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCce
Q 039302 247 GRLVSGD----------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSA 316 (479)
Q Consensus 247 ~~l~sg~----------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~ 316 (479)
.+|+.|. ..|.|+++++... .... ..-....++|++++-- +| .|++|- ..+|++|++...+..
T Consensus 845 ~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~-kL~l--v~~~~v~g~v~al~~~-~g--~Lla~i-g~~l~vy~l~~~~~L 917 (1158)
T 3ei3_A 845 TYFIVGTAMVYPEEAEPKQGRIVVFQYSDG-KLQT--VAEKEVKGAVYSMVEF-NG--KLLASI-NSTVRLYEWTTEKEL 917 (1158)
T ss_dssp CEEEEEEEECCTTCSSCCCEEEEEEEEETT-EEEE--EEEEEESSCEEEEEEE-TT--EEEEEE-TTEEEEEEECTTSCE
T ss_pred EEEEEEeeecCCCCCCCCceEEEEEEEECC-EEEE--EEEEEcCCcCEEEeee-CC--EEEEEc-CCEEEEEECCCCceE
Confidence 4888886 4588999998732 2111 1112336788888743 23 344433 478999999876422
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe--ecCCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF--EYHKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~--~~h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
......+. .|..+.....+ ++++.|..-..|.++-.+.... .+..+ ..+..+++++.+--+ ..++.+..+|
T Consensus 918 ~~~~~~~~-~i~~~~l~~~~-~~I~vgD~~~Sv~~~~y~~~~~---~L~~~a~D~~~~~vta~~~ld~--~t~l~aD~~g 990 (1158)
T 3ei3_A 918 RTECNHYN-NIMALYLKTKG-DFILVGDLMRSVLLLAYKPMEG---NFEEIARDFNPNWMSAVEILDD--DNFLGAENAF 990 (1158)
T ss_dssp EEEEEECC-CSCEEEEEEET-TEEEEEESSBCEEEEEEETTTT---EEEEEEECCSCBCEEEEEEEET--TEEEEEETTS
T ss_pred EEEeeccc-cEEEEEEeccC-CEEEEEEhhheEEEEEEEcCCC---eEEEEEeecccccEEEEEEEcc--CcEEEEcCCC
Confidence 21111121 12222332234 6888888777777765443321 23333 335667899988643 5778888999
Q ss_pred cEEEEECCCC
Q 039302 395 QLTIWDLSLE 404 (479)
Q Consensus 395 ~I~iwdl~~~ 404 (479)
.|.+......
T Consensus 991 Nl~vl~~~~~ 1000 (1158)
T 3ei3_A 991 NLFVCQKDSA 1000 (1158)
T ss_dssp EEEEEEECTT
T ss_pred cEEEEecCCC
Confidence 9999888764
No 308
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.29 E-value=0.9 Score=44.06 Aligned_cols=203 Identities=15% Similarity=0.141 Sum_probs=129.8
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCC----CceEEEEeCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHK----DEGYAIDWNPV 244 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~s~~ 244 (479)
...|.-=+|-... .|+--+ +..|+-|++.. ...|...|..|. ..|.....+++
T Consensus 105 ~e~VvfWkWis~~--~l~lVT-~taVyHWsi~~--------------------~s~P~kvFdR~~~L~~~QIInY~~d~~ 161 (494)
T 1bpo_A 105 TDDVTFWKWISLN--TVALVT-DNAVYHWSMEG--------------------ESQPVKMFDRHSSLAGCQIINYRTDAK 161 (494)
T ss_dssp SSCCCEEEEEETT--EEEEEC-SSEEEEEESSS--------------------SCCCEEEEECCGGGTTCEEEEEEECTT
T ss_pred CCCceEEEecCCC--eEEEEc-CCeeEEecccC--------------------CCCchhheecchhcccceEEEEEECCC
Confidence 3455555665544 343323 35799999976 256667776654 36777777888
Q ss_pred CCCeEEEEe------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC--CCcEEEEEeCC---CcEEEEEcCCC
Q 039302 245 APGRLVSGD------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT--ESDVFASCSVD---GNIAIWDTRVG 313 (479)
Q Consensus 245 ~~~~l~sg~------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~--~~~~l~s~s~d---g~I~iwD~~~~ 313 (479)
.+-.+++|- -.|.+.+|....... +.+.||.+.-..+...-+ ...+|+.+... +.++|-++...
T Consensus 162 ~kW~~l~GI~~~~~~v~G~mQLYS~er~~s-----Q~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~ 236 (494)
T 1bpo_A 162 QKWLLLTGISAQQNRVVGAMQLYSVDRKVS-----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTP 236 (494)
T ss_dssp SSEEEEEEEEEETTEEEEEEEEEESTTCCE-----EEECCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCC
T ss_pred CCeEEEEeecccCCcccceEEEeecccccc-----chheeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCC
Confidence 773344442 347889999876433 557888766655554322 12355555543 78999998643
Q ss_pred ---Ccee--eE---E---ecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCC
Q 039302 314 ---KSAL--MS---F---KAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPH 382 (479)
Q Consensus 314 ---~~~~--~~---~---~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~ 382 (479)
..+. .. + .+-.+---++..++.. .++..-+.-|.|++||+.++. ++..-+-...+|-.-+-+..
T Consensus 237 ~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviTK~G~i~lyDleTgt----~i~~nrIs~~~iF~t~~~~~ 311 (494)
T 1bpo_A 237 PTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT----CIYMNRISGETIFVTAPHEA 311 (494)
T ss_dssp CTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEETTSEEEEEETTTCC----EEEEEECCSSCEEEEEEETT
T ss_pred ccCCCCccceeeeeeCCcccccCceeEEEecccC-CEEEEEecCceEEEEecccce----eeeeecccCCceEEecccCC
Confidence 1111 11 1 1123345577888777 677788899999999999998 78877777788877666665
Q ss_pred CCCEEEEEeCCCcEEEEECCCCC
Q 039302 383 EGSTLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 383 ~~~~las~s~Dg~I~iwdl~~~~ 405 (479)
. .=++.....|.|.--.+....
T Consensus 312 ~-~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 312 T-AGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp T-TEEEEEETTCEEEEEEECTTT
T ss_pred C-CcEEEEccCceEEEEEEcccc
Confidence 5 344455588888877776553
No 309
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=96.16 E-value=0.26 Score=50.52 Aligned_cols=84 Identities=23% Similarity=0.281 Sum_probs=50.5
Q ss_pred CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCe-EEEEEe
Q 039302 302 DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPV-TSIEWS 380 (479)
Q Consensus 302 dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I-~~v~~s 380 (479)
+|.|..||+.+++ .+-+..... .+..-.....+ .+++.|+.||.++.||.++++ .+..++.....+ .-+.|.
T Consensus 465 ~G~l~A~D~~tG~-~~W~~~~~~-~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~----~lW~~~~~~g~~a~P~~y~ 537 (582)
T 1flg_A 465 VGSLRAMDPVSGK-VVWEHKEHL-PLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGK----ELWKFQTGSGIVSPPITWE 537 (582)
T ss_dssp SEEEEEECTTTCC-EEEEEEESS-CCCSCCEEETT-TEEEEECTTSEEEEEETTTCC----EEEEEECSSCCCSCCEEEE
T ss_pred cceEEEEECCCCC-EEEEecCCC-CCcccceEeCC-CEEEEECCCCcEEEEECCCCC----EEEEecCCCCcccCceEEE
Confidence 6889999999986 333333221 12111111124 577889999999999999998 777776533222 125555
Q ss_pred CCCCCEEEEEeC
Q 039302 381 PHEGSTLAVSSA 392 (479)
Q Consensus 381 p~~~~~las~s~ 392 (479)
.++..++++.+.
T Consensus 538 ~~G~qYv~~~~G 549 (582)
T 1flg_A 538 QDGEQYLGVTVG 549 (582)
T ss_dssp ETTEEEEEEEEC
T ss_pred ECCEEEEEEEcc
Confidence 545345554433
No 310
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=96.02 E-value=0.52 Score=52.35 Aligned_cols=159 Identities=11% Similarity=0.040 Sum_probs=89.5
Q ss_pred EEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcE-EecCCCCceEEEEeC
Q 039302 164 RKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLV-KFGGHKDEGYAIDWN 242 (479)
Q Consensus 164 ~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~s 242 (479)
.....++.|++++-.. | +++|+. ..+|+||++... +.+. ....+. .+..+...
T Consensus 880 ~~~~v~g~v~al~~~~-g-~Lla~i--g~~l~vy~l~~~---------------------~~L~~~~~~~~-~i~~~~l~ 933 (1158)
T 3ei3_A 880 AEKEVKGAVYSMVEFN-G-KLLASI--NSTVRLYEWTTE---------------------KELRTECNHYN-NIMALYLK 933 (1158)
T ss_dssp EEEEESSCEEEEEEET-T-EEEEEE--TTEEEEEEECTT---------------------SCEEEEEEECC-CSCEEEEE
T ss_pred EEEEcCCcCEEEeeeC-C-EEEEEc--CCEEEEEECCCC---------------------ceEEEEeeccc-cEEEEEEe
Confidence 3445578999988764 4 566553 478999999761 1121 111111 13333333
Q ss_pred CCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC------ce
Q 039302 243 PVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------SA 316 (479)
Q Consensus 243 ~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------~~ 316 (479)
..+. +++.|+.-..|.+...+....... ...-..+...++++.+-.++ .++.+..+|.|.+....... ..
T Consensus 934 ~~~~-~I~vgD~~~Sv~~~~y~~~~~~L~-~~a~D~~~~~vta~~~ld~~--t~l~aD~~gNl~vl~~~~~~~~~~~~~~ 1009 (1158)
T 3ei3_A 934 TKGD-FILVGDLMRSVLLLAYKPMEGNFE-EIARDFNPNWMSAVEILDDD--NFLGAENAFNLFVCQKDSAATTDEERQH 1009 (1158)
T ss_dssp EETT-EEEEEESSBCEEEEEEETTTTEEE-EEEECCSCBCEEEEEEEETT--EEEEEETTSEEEEEEECTTCCSTTGGGB
T ss_pred ccCC-EEEEEEhhheEEEEEEEcCCCeEE-EEEeecccccEEEEEEEccC--cEEEEcCCCcEEEEecCCCCCCccccce
Confidence 3454 999999888888876543221110 00112234568888886544 68889999999998765421 11
Q ss_pred ee-EE-ecCCCCEEEEE---EcCCC--------CcEEEEEeCCCeEEEE
Q 039302 317 LM-SF-KAHNADVNVIS---WNRLA--------SCLLASGSDDGTFSIH 352 (479)
Q Consensus 317 ~~-~~-~~h~~~v~~l~---~~p~~--------~~~l~sgs~dg~i~iw 352 (479)
+. .- ......|+++. +.+.+ ...++.|+.+|.|.+.
T Consensus 1010 L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l 1058 (1158)
T 3ei3_A 1010 LQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLV 1058 (1158)
T ss_dssp EEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEE
T ss_pred eeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEE
Confidence 11 11 11245577775 33322 2456777788877765
No 311
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=95.87 E-value=0.33 Score=49.81 Aligned_cols=142 Identities=14% Similarity=0.156 Sum_probs=83.7
Q ss_pred EEEEeCCCeEEEEecCCCCc-cccCCCCc----ccCCCcEEEEEECCCCCcEEEEEe------CCCcEEEEEcCCCCcee
Q 039302 249 LVSGDCNSCIHLWEPASDAT-WNVDPNPF----IGHAASVEDLQWSPTESDVFASCS------VDGNIAIWDTRVGKSAL 317 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~-~~~~~~~~----~~h~~~V~~l~~sp~~~~~l~s~s------~dg~I~iwD~~~~~~~~ 317 (479)
|+.++.|+.|..+|..+++. |....... .....++. . ++ .+++++ .+|.|+-+|.++++ .+
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v----~-~g--~V~vg~~g~e~g~~g~v~A~D~~TG~-~~ 195 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV----V-KD--KVIIGSSGAELGVRGYLTAYDVKTGE-QV 195 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE----E-TT--EEEECCBCGGGTCCCEEEEEETTTCC-EE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE----E-CC--EEEEEecccccCCCCeEEEEECCCCc-EE
Confidence 88898999999999988765 32211110 00111211 1 23 444444 38999999999986 33
Q ss_pred eEEecCCCC-------------------------------------E-EEEEEcCCCCcEEEEEeCC-------------
Q 039302 318 MSFKAHNAD-------------------------------------V-NVISWNRLASCLLASGSDD------------- 346 (479)
Q Consensus 318 ~~~~~h~~~-------------------------------------v-~~l~~~p~~~~~l~sgs~d------------- 346 (479)
-.+...... + ..+++.+.. .++..+..+
T Consensus 196 W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~-g~vy~g~g~~~p~~~~~r~gd~ 274 (599)
T 1w6s_A 196 WRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGT-NLIYFGTGNPAPWNETMRPGDN 274 (599)
T ss_dssp EEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTT-TEEEEECCCCSCSCGGGSCSCC
T ss_pred EEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCC-CEEEEeCCCCccccCcccCCCc
Confidence 333221110 0 134555666 566666554
Q ss_pred ---CeEEEEeCCCCCCCCceEEEeec--CC--------CCeEEEEEe-CCCC---CEEEEEeCCCcEEEEECCCCC
Q 039302 347 ---GTFSIHDLRLLKGGDSVVAHFEY--HK--------HPVTSIEWS-PHEG---STLAVSSADNQLTIWDLSLEK 405 (479)
Q Consensus 347 ---g~i~iwDlr~~~~~~~~~~~~~~--h~--------~~I~~v~~s-p~~~---~~las~s~Dg~I~iwdl~~~~ 405 (479)
+.|.-+|.++++ .+-.+.. |. .++. +... . ++ .+++.++.+|.++++|..+++
T Consensus 275 ~y~~sv~Ald~~TG~----~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~-~G~~~~~v~~~~~~G~l~~lD~~tG~ 344 (599)
T 1w6s_A 275 KWTMTIFGRDADTGE----AKFGYQKTPHDEWDYAGVNVMML-SEQKDK-DGKARKLLTHPDRNGIVYTLDRTDGA 344 (599)
T ss_dssp TTSSEEEEEETTTCC----EEEEEESSTTCSSCCCCCCCCEE-EEEECT-TSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccceEEEEeCCCCc----eeeEeecCCCccccccCCCccEE-Eecccc-CCcEEEEEEEECCCcEEEEEECCCCC
Confidence 389999999987 5555543 21 1222 2222 2 33 467778899999999988764
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.37 E-value=0.36 Score=45.91 Aligned_cols=156 Identities=12% Similarity=0.140 Sum_probs=84.4
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc-CCCCcccCCCcEEEEEECCC---CCcEEEEEeCC-----C
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV-DPNPFIGHAASVEDLQWSPT---ESDVFASCSVD-----G 303 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~-~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~d-----g 303 (479)
-..-.+|+|.|++. |+.+...|.|.+++ .+....+ ....+.........|+|+|+ +..++++-+.. +
T Consensus 30 l~~P~~ia~~pdG~--l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 30 LEVPWALAFLPDGG--MLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRN 105 (352)
T ss_dssp CSCEEEEEECTTSC--EEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEE
T ss_pred CCCceEEEEcCCCe--EEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCcc
Confidence 34567999999985 55556679999998 2221111 01112222456889999998 55355555433 5
Q ss_pred cEEEEEcCCCC----ceeeE-Ee---cCCCCEEEEEEcCCCCcEEEEEeC-------------CCeEEEEeCCCCCCC--
Q 039302 304 NIAIWDTRVGK----SALMS-FK---AHNADVNVISWNRLASCLLASGSD-------------DGTFSIHDLRLLKGG-- 360 (479)
Q Consensus 304 ~I~iwD~~~~~----~~~~~-~~---~h~~~v~~l~~~p~~~~~l~sgs~-------------dg~i~iwDlr~~~~~-- 360 (479)
.|..|+..... ..+.. +. ........|+|.|++ .++++-++ .|.|.-++....-..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~n 184 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG-MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGN 184 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS-CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTC
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC-CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCC
Confidence 68888876431 11111 22 111234689999999 66666432 245666665431000
Q ss_pred --------CceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCc
Q 039302 361 --------DSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQ 395 (479)
Q Consensus 361 --------~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~ 395 (479)
...+. -.+|. ....++|+|..+.++++-...+.
T Consensus 185 pf~~~~~~~~~i~-a~G~r-np~g~a~d~~~g~l~v~d~g~~~ 225 (352)
T 2ism_A 185 PFLGRRGARPEVY-SLGHR-NPQGLAWHPKTGELFSSEHGPSG 225 (352)
T ss_dssp TTTTCTTSCTTEE-EECCS-EECCCEECTTTCCEEEEEECC--
T ss_pred cccCCCCCCccEE-EEcCC-CcccEEEECCCCCEEEEEcCCCC
Confidence 00121 12333 34678999955466665444333
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=95.18 E-value=0.87 Score=41.73 Aligned_cols=144 Identities=13% Similarity=0.220 Sum_probs=71.6
Q ss_pred eEEEEeCC-----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCce-
Q 039302 248 RLVSGDCN-----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRVGKSA- 316 (479)
Q Consensus 248 ~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~~~~~- 316 (479)
.++.|+.+ ..+.+||+.+. .|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+..-.
T Consensus 115 lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 115 IYVSGGFDGSRRHTSMERYDPNID-QWSMLG-DMQTAREGAGLVVA--SGV-IYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp EEEECCBCSSCBCCEEEEEETTTT-EEEEEE-ECSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred EEEEcccCCCcccceEEEEcCCCC-eEEECC-CCCCCcccceEEEE--CCE-EEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 66666543 36888888663 333211 11111111112222 444 77777754 45889998876311
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
+..+........++.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.|+
T Consensus 190 ~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~i~v~GG 261 (301)
T 2vpj_A 190 VTPMATKRSGAGVALL--ND-HIYVVGGFDGTAHLSSVEAYNIRTDS--WTTVTSMTTPRCYVGATVL---RGRLYAIAG 261 (301)
T ss_dssp ECCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEECC
T ss_pred CCCCCcccccceEEEE--CC-EEEEEeCCCCCcccceEEEEeCCCCc--EEECCCCCCcccceeEEEE---CCEEEEEcC
Confidence 1111111111223333 34 788888764 468999998765 1122212111112222333 347778777
Q ss_pred CC-----CcEEEEECCCC
Q 039302 392 AD-----NQLTIWDLSLE 404 (479)
Q Consensus 392 ~D-----g~I~iwdl~~~ 404 (479)
.+ ..|.+||+...
T Consensus 262 ~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 262 YDGNSLLSSIECYDPIID 279 (301)
T ss_dssp BCSSSBEEEEEEEETTTT
T ss_pred cCCCcccccEEEEcCCCC
Confidence 65 35778887654
No 314
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.15 E-value=1.1 Score=42.52 Aligned_cols=154 Identities=15% Similarity=0.080 Sum_probs=83.5
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCC---CCcEEEEEeC---C----
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPT---ESDVFASCSV---D---- 302 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s~---d---- 302 (479)
-....+|+|.|++. |+.+..+|.|++++. .+.........+.........|+|+|+ +..++++-+. +
T Consensus 28 l~~P~~ia~~pdG~--l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~ 104 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR--YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIR 104 (354)
T ss_dssp CSCEEEEEEEETTE--EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEE
T ss_pred CCCCeEEEEcCCCe--EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcc
Confidence 34678999999874 666667799999974 322111101111122356889999997 4535555442 3
Q ss_pred CcEEEEEcCCCC------ceeeE-Eec-CCCCEEEEEEcCCCCcEEEEEeC-------------CCeEEEEeCCCCCCCC
Q 039302 303 GNIAIWDTRVGK------SALMS-FKA-HNADVNVISWNRLASCLLASGSD-------------DGTFSIHDLRLLKGGD 361 (479)
Q Consensus 303 g~I~iwD~~~~~------~~~~~-~~~-h~~~v~~l~~~p~~~~~l~sgs~-------------dg~i~iwDlr~~~~~~ 361 (479)
..|..|+..... ..+.. +.. .......|.|.|++ .++++-++ .|.|.-++....-...
T Consensus 105 ~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG-~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~ 183 (354)
T 3a9g_A 105 NRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG-MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPAD 183 (354)
T ss_dssp EEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS-CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTT
T ss_pred eEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC-cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCC
Confidence 567777766431 11111 221 11234679999999 66666433 2456555554220000
Q ss_pred -----ceEEEeecCCCCeEEEEEeCCCCCEEEEEeC
Q 039302 362 -----SVVAHFEYHKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 362 -----~~~~~~~~h~~~I~~v~~sp~~~~~las~s~ 392 (479)
..+. -.+|.. ...++|+|..+.++++-..
T Consensus 184 npf~~~~i~-a~G~rn-p~Gla~d~~~g~l~v~d~g 217 (354)
T 3a9g_A 184 NPFPNSPIW-SYGHRN-PQGIDWHRASGVMVATEHG 217 (354)
T ss_dssp SSSTTCCEE-EECCSC-CCEEEECTTTCCEEEEECC
T ss_pred CCCCCCcEE-EEccCC-cceEEEeCCCCCEEEEecC
Confidence 0122 233443 3689999955466665443
No 315
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.91 E-value=1.3 Score=42.09 Aligned_cols=152 Identities=9% Similarity=0.071 Sum_probs=81.8
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccC-C-CCcccCCCcEEEEEECCC---CCcEEEEEeC-------
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVD-P-NPFIGHAASVEDLQWSPT---ESDVFASCSV------- 301 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~-~-~~~~~h~~~V~~l~~sp~---~~~~l~s~s~------- 301 (479)
.....|+|.|++. .|+.+...|.|++++........+. . ..+.........|+|+|+ +..++++-+.
T Consensus 18 ~~P~~i~~~pdG~-~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNH-GMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTC-CEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCC-EEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 3568999999985 3777778899999985321110000 0 111122346789999996 4435555433
Q ss_pred CCcEEEEEcCCCCc------eeeE-Ee---cCCCCEEEEEEcCCCCcEEEEEeCC-------------CeEEEEeCCCCC
Q 039302 302 DGNIAIWDTRVGKS------ALMS-FK---AHNADVNVISWNRLASCLLASGSDD-------------GTFSIHDLRLLK 358 (479)
Q Consensus 302 dg~I~iwD~~~~~~------~~~~-~~---~h~~~v~~l~~~p~~~~~l~sgs~d-------------g~i~iwDlr~~~ 358 (479)
...|..|++..... .+.. +. ........|.|.|++ .++++-++. |.|.-++....-
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 23566666653310 1111 11 111224679999999 666665442 467666765321
Q ss_pred CC----------CceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 359 GG----------DSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 359 ~~----------~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
.. ...+.. .+|. ....++|+|..+.++++
T Consensus 176 p~~npf~~~~~~~~~i~a-~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS-YGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE-ECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCCCCcCCCCCCccEEE-EcCc-CccceEEECCCCCEEEE
Confidence 00 001221 2333 45789999954355554
No 316
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=94.89 E-value=2.6 Score=39.73 Aligned_cols=247 Identities=13% Similarity=0.096 Sum_probs=127.9
Q ss_pred cCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEe----cCCCCceEEEEeC
Q 039302 167 AHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKF----GGHKDEGYAIDWN 242 (479)
Q Consensus 167 ~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~s 242 (479)
..-...+.|+|.|++ .++++--..|.|++++..... ...+..+ .........|+++
T Consensus 29 ~gL~~P~~ia~~pdG-~llVter~~G~I~~v~~~~g~-------------------~~~v~~~~~v~~~g~~GllGia~~ 88 (347)
T 3das_A 29 TGLNSPWGLAPLPGG-DLLVSSRDEATITRVDAKTGR-------------------KTELGEVPGVSPSGEGGLLGIALS 88 (347)
T ss_dssp CCCSSEEEEEECTTS-CEEEEETTTCEEEEECTTTCC-------------------EEEEEECTTCCCBTTBSEEEEEEC
T ss_pred cCCCCceEEEEcCCC-cEEEEEecCCEEEEEECCCCc-------------------EeeecccCceeecCCCCceeeEec
Confidence 335677899999999 677774448999998754311 0111111 1223467899999
Q ss_pred CC--CCCeEEEE---eCCCeEEEEecCCCC----c---cccC---CCCcccCCCcEEEEEECCCCCcEEEEEeC------
Q 039302 243 PV--APGRLVSG---DCNSCIHLWEPASDA----T---WNVD---PNPFIGHAASVEDLQWSPTESDVFASCSV------ 301 (479)
Q Consensus 243 ~~--~~~~l~sg---~~dg~I~lwd~~~~~----~---~~~~---~~~~~~h~~~V~~l~~sp~~~~~l~s~s~------ 301 (479)
|+ ..+.|... ..++.|.-|.+.... . .... ...-..|. ...|.|.|++. ++++.+.
T Consensus 89 Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~--g~~l~fgpDG~-Lyvt~Gd~~~~~~ 165 (347)
T 3das_A 89 PDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHN--GGRIAFGPDKM-LYAGTGESGDTGL 165 (347)
T ss_dssp TTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCC--CCCEEECTTSC-EEEECBCTTCGGG
T ss_pred cccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCcc--CccccCCCCCC-EEEEECCCCCCcc
Confidence 96 12245443 234566666664421 1 0000 00112233 45799999997 6666542
Q ss_pred -------CCcEEEEEcCCCC-------ceeeEEecCCCCEEEEEEcCCCCcEEEEE-eCCCeEEEEeCCCCCC-------
Q 039302 302 -------DGNIAIWDTRVGK-------SALMSFKAHNADVNVISWNRLASCLLASG-SDDGTFSIHDLRLLKG------- 359 (479)
Q Consensus 302 -------dg~I~iwD~~~~~-------~~~~~~~~h~~~v~~l~~~p~~~~~l~sg-s~dg~i~iwDlr~~~~------- 359 (479)
.|.|.-.+....- .....-.+|. ....++|+|++ .++++- +.++.=.|--+..+..
T Consensus 166 ~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G-~L~~~d~g~~~~deln~i~~G~nyGwP~~~ 243 (347)
T 3das_A 166 SQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQ-RLFASEFGQDTWDELNAIKPGDNYGWPEAE 243 (347)
T ss_dssp TTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCS-BCCEEEECTTC-CEEEEECCSSSCEEEEEECTTCBCCTTTCC
T ss_pred ccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCC-CcceEEECCCC-CEEEEecCCCCCceeeEEcCCCEecCCccc
Confidence 2444444544220 0111113443 35688999977 555543 2333222222222211
Q ss_pred -------CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceE
Q 039302 360 -------GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLL 432 (479)
Q Consensus 360 -------~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~ 432 (479)
...++..+..+......++|.. +.+|...-..+.|....+..... ...++ .
T Consensus 244 g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l~~~~l~~v~~~~~~~-------------------~~~~e-~ 301 (347)
T 3das_A 244 GKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGLRGERLWRIPLKGTAA-------------------AADPQ-A 301 (347)
T ss_dssp SSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEESTTCSEEEEEEETTEE-------------------SSCCE-E
T ss_pred CCCCCccccCCcEecCCCCCCCcceEEEc--CceeeccccCCEEEEEEecCCce-------------------ecceE-E
Confidence 0124555544434667888874 36666666666776666643310 00111 2
Q ss_pred EeecCCCCeeeEEEeCCCCcEEEEEcCC
Q 039302 433 FIHQGQKDLKELHWHTQVPGMIVSTAAD 460 (479)
Q Consensus 433 ~~h~g~~~V~~v~w~p~~~~ll~s~~~d 460 (479)
+.......+.+|+..|++..++++...+
T Consensus 302 ~l~~~~gR~~dv~~~pDG~lyv~td~~~ 329 (347)
T 3das_A 302 FLEGEYGRLRTVAPAGGDKLWLVTSNTD 329 (347)
T ss_dssp ESTTTSSCEEEEEEEETTEEEEEECTTS
T ss_pred eecCCCCCccEEEECCCCcEEEEEcCCC
Confidence 2222234799999999996444444333
No 317
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.61 E-value=0.95 Score=39.61 Aligned_cols=139 Identities=10% Similarity=0.038 Sum_probs=76.4
Q ss_pred eEEEEeCCCeEEEEecCCCCc--cccCCCCcccC--CCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-----eee
Q 039302 248 RLVSGDCNSCIHLWEPASDAT--WNVDPNPFIGH--AASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-----ALM 318 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~--~~~~~~~~~~h--~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-----~~~ 318 (479)
+|+....| +++.=.+..... +... ....+. =..+.+++|+|++. +.++ .+|.+.-.+..+... .-.
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~-a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLAR-ATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHH-SEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhh-ccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccccc
Confidence 67777777 766655544331 2100 111222 23677999999887 6666 677766666544221 111
Q ss_pred EEe-cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceE---EEe-ecCCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 319 SFK-AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVV---AHF-EYHKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 319 ~~~-~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~---~~~-~~h~~~I~~v~~sp~~~~~las~s~D 393 (479)
.+- .--....++.|.|++ .+.++ .||.|+-++-.+.... .-+ ..+ ..-=..+..|.+.|++ .+.+.. |
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G-~LYav--~dG~iyr~~pP~~~~~-~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--d 153 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNG-YLYAV--SKDKLYKASPPQSDTD-NWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--G 153 (236)
T ss_dssp EEECSCGGGCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTC-CHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--T
T ss_pred EecccccccceEEEECCCC-CEEEe--CCCEEEEeCCCcCCCC-ceeccccEeccCCCCceEEEEECCCc-eEEEEe--C
Confidence 110 001124789999999 67666 5599888875433211 010 111 1111467899999965 666665 7
Q ss_pred CcEEE
Q 039302 394 NQLTI 398 (479)
Q Consensus 394 g~I~i 398 (479)
+.++-
T Consensus 154 g~lyr 158 (236)
T 1tl2_A 154 QQFYK 158 (236)
T ss_dssp TEEEE
T ss_pred CcEEe
Confidence 77543
No 318
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=94.32 E-value=7.5 Score=43.64 Aligned_cols=197 Identities=12% Similarity=0.152 Sum_probs=112.0
Q ss_pred EecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCC
Q 039302 177 AMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNS 256 (479)
Q Consensus 177 ~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg 256 (479)
.+|.. .++|--. ..++.|||+.. ...+..+.- ...|.-=.|-... .|+-.+ +.
T Consensus 73 MnP~~-~iiALra-g~~lQiFnl~~---------------------k~klks~~~-~e~VvfWkWis~~--~l~lVT-~~ 125 (1630)
T 1xi4_A 73 MNPAS-KVIALKA-GKTLQIFNIEM---------------------KSKMKAHTM-TDDVTFWKWISLN--TVALVT-DN 125 (1630)
T ss_pred cCCCc-ceEEEec-CCeEEEeehHH---------------------hhhhccccc-CCCceEEEecCCC--eeEEEc-CC
Confidence 34444 5666543 67899999987 333333332 2356556666544 444444 56
Q ss_pred eEEEEecCCCCccccCCCCcccC----CCcEEEEEECCCCCcEEEEEe------CCCcEEEEEcCCCCceeeEEecCCCC
Q 039302 257 CIHLWEPASDATWNVDPNPFIGH----AASVEDLQWSPTESDVFASCS------VDGNIAIWDTRVGKSALMSFKAHNAD 326 (479)
Q Consensus 257 ~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s------~dg~I~iwD~~~~~~~~~~~~~h~~~ 326 (479)
.|+.|++...... ...|..| ...|..-..+++.+-++++|- ..|.+.+|.+.... .+.+.+|...
T Consensus 126 aVyHW~~~~~s~P---~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--sQ~iegha~~ 200 (1630)
T 1xi4_A 126 AVYHWSMEGESQP---VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHAAS 200 (1630)
T ss_pred eEEEeccCCCCcc---HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc--chhhhHhHhh
Confidence 9999999642221 1233333 356777777888883333332 45889999988653 3445666554
Q ss_pred EEEEEEc--CCCCcEEEEEeC---CCeEEEEeCCCCCCCC-----ceEEEeec---CCCCeEEEEEeCCCCCEEEEEeCC
Q 039302 327 VNVISWN--RLASCLLASGSD---DGTFSIHDLRLLKGGD-----SVVAHFEY---HKHPVTSIEWSPHEGSTLAVSSAD 393 (479)
Q Consensus 327 v~~l~~~--p~~~~~l~sgs~---dg~i~iwDlr~~~~~~-----~~~~~~~~---h~~~I~~v~~sp~~~~~las~s~D 393 (479)
...+... +....+++.+.. .+.++|-++.....+. ..+..+.. -..-..++..++.. .++..-+.-
T Consensus 201 F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~ 279 (1630)
T 1xi4_A 201 FAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKY 279 (1630)
T ss_pred hheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecC
Confidence 4333332 111123332222 2689999986541101 11111111 12334577888865 677788889
Q ss_pred CcEEEEECCCCCC
Q 039302 394 NQLTIWDLSLEKD 406 (479)
Q Consensus 394 g~I~iwdl~~~~~ 406 (479)
|.|.+||+.++..
T Consensus 280 G~~~~~d~~t~~~ 292 (1630)
T 1xi4_A 280 GYIHLYDLETGTC 292 (1630)
T ss_pred ceEEEEecccchh
Confidence 9999999999864
No 319
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=94.24 E-value=3 Score=41.00 Aligned_cols=110 Identities=9% Similarity=0.129 Sum_probs=61.4
Q ss_pred CcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-eeeEEe------cCCCCEEEEEEcCC---CCcEEEEEeC-----
Q 039302 281 ASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS-ALMSFK------AHNADVNVISWNRL---ASCLLASGSD----- 345 (479)
Q Consensus 281 ~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~-~~~~~~------~h~~~v~~l~~~p~---~~~~l~sgs~----- 345 (479)
.....|+|.|+++ ++++-...+.|++++...+.. .+..+. .....+..|+|+|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 27 NKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp SSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3467999999998 666544335788887654432 122221 12456789999995 4355555442
Q ss_pred -------CCeEEEEeCCCCCCC---CceEE-Eeec-CCCCeEEEEEeCCCCCEEEEEeC
Q 039302 346 -------DGTFSIHDLRLLKGG---DSVVA-HFEY-HKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 346 -------dg~i~iwDlr~~~~~---~~~~~-~~~~-h~~~I~~v~~sp~~~~~las~s~ 392 (479)
...|.-|++...... ...+. .+.. .......|.|.|++ .++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECC
Confidence 235555655332100 01122 1221 12347899999966 66666553
No 320
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.81 E-value=4.5 Score=38.10 Aligned_cols=158 Identities=14% Similarity=0.107 Sum_probs=84.7
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc--CCCCcccCCCcEEEEEECCC---CCcEEEEEe--
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV--DPNPFIGHAASVEDLQWSPT---ESDVFASCS-- 300 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~--~~~~~~~h~~~V~~l~~sp~---~~~~l~s~s-- 300 (479)
.+...-..-+.|+|.|++. +|++--..|.|++++...+....+ ....+.........|+|+|+ +..++++-+
T Consensus 26 ~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 3444445778999999986 665555589999998654332111 01122233567899999995 342444322
Q ss_pred CCCcEEEEEcCCC-----C----ceee-EEe-cCCCCEEEEEEcCCCCcEEEEEeC-------------CCeEEEEeCCC
Q 039302 301 VDGNIAIWDTRVG-----K----SALM-SFK-AHNADVNVISWNRLASCLLASGSD-------------DGTFSIHDLRL 356 (479)
Q Consensus 301 ~dg~I~iwD~~~~-----~----~~~~-~~~-~h~~~v~~l~~~p~~~~~l~sgs~-------------dg~i~iwDlr~ 356 (479)
.++.|.-|.+... . ..+. .+. ........|.|.|++ .++++-++ .|.|.-.+...
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG-~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDK-MLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTS-CEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCC-CEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 3445655655441 1 1111 121 112234679999999 66666442 34444445432
Q ss_pred CCCCC-----ceEEEeecCCCCeEEEEEeCCCCCEEEEE
Q 039302 357 LKGGD-----SVVAHFEYHKHPVTSIEWSPHEGSTLAVS 390 (479)
Q Consensus 357 ~~~~~-----~~~~~~~~h~~~I~~v~~sp~~~~~las~ 390 (479)
.-... ..+. -.+|.. ...++|+|++ .++++=
T Consensus 184 ~ip~~nPf~~~~i~-a~G~RN-p~Gla~dp~G-~L~~~d 219 (347)
T 3das_A 184 EPAPGNPFPGSPVY-SYGHRN-VQGLAWDDKQ-RLFASE 219 (347)
T ss_dssp SBCTTCSSTTCCEE-EBCCSB-CCEEEECTTC-CEEEEE
T ss_pred CccCCCCCCCCeEE-eeCCCC-cceEEECCCC-CEEEEe
Confidence 20000 0122 224543 4689999954 555543
No 321
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=93.62 E-value=3.2 Score=38.05 Aligned_cols=144 Identities=14% Similarity=0.261 Sum_probs=71.3
Q ss_pred eEEEEeCC-----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCce-
Q 039302 248 RLVSGDCN-----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRVGKSA- 316 (479)
Q Consensus 248 ~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~~~~~- 316 (479)
+++.|+.+ ..+.+||+.+. .|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+..-.
T Consensus 124 iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 124 IYAVGGSHGCIHHNSVERYEPERD-EWHLVA-PMLTRRIGVGVAVL--NRL-LYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp EEEECCEETTEECCCEEEEETTTT-EEEECC-CCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred EEEEcCCCCCcccccEEEECCCCC-eEeECC-CCCccccceEEEEE--CCE-EEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 55665533 36888898763 443221 11111111122233 344 77777754 45889998875311
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEe
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s 391 (479)
+..+........++.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.|+
T Consensus 199 ~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~i~v~GG 270 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL--HN-CIYAAGGYDGQDQLNSVERYDVETET--WTFVAPMKHRRSALGITVH---QGRIYVLGG 270 (308)
T ss_dssp CCCCSSCCBSCEEEEE--TT-EEEEECCBCSSSBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE---TTEEEEECC
T ss_pred CCCCCCccccceEEEE--CC-EEEEEeCCCCCCccceEEEEeCCCCc--EEECCCCCCCccceEEEEE---CCEEEEEcC
Confidence 1111111112223333 34 788888765 468999988754 1112112111111222222 347777777
Q ss_pred CC-----CcEEEEECCCC
Q 039302 392 AD-----NQLTIWDLSLE 404 (479)
Q Consensus 392 ~D-----g~I~iwdl~~~ 404 (479)
.+ ..|.+||+...
T Consensus 271 ~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 271 YDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp BCSSCBCCEEEEEETTTT
T ss_pred cCCCcccceEEEEcCCCC
Confidence 54 34677887654
No 322
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.62 E-value=4.2 Score=45.56 Aligned_cols=199 Identities=15% Similarity=0.136 Sum_probs=109.6
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCC----CCceEEEEeCCCC
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGH----KDEGYAIDWNPVA 245 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~s~~~ 245 (479)
..|.-=+|-... .|+--+ +..|+-|++.. ...|...|..| +..|..-.-+++.
T Consensus 106 e~VvfWkWis~~--~l~lVT-~~aVyHW~~~~--------------------~s~P~k~fdR~~~L~~~QIinY~~d~~~ 162 (1630)
T 1xi4_A 106 DDVTFWKWISLN--TVALVT-DNAVYHWSMEG--------------------ESQPVKMFDRHSSLAGCQIINYRTDAKQ 162 (1630)
T ss_pred CCceEEEecCCC--eeEEEc-CCeEEEeccCC--------------------CCccHHHHhcchhcccCeeEEeeeCCCC
Confidence 345555555444 333322 35699999975 13444444444 3466667777777
Q ss_pred CCeEEEEe------CCCeEEEEecCCCCccccCCCCcccCCCcEEEEEEC--CCCCcEEEEEeC---CCcEEEEEcCCC-
Q 039302 246 PGRLVSGD------CNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWS--PTESDVFASCSV---DGNIAIWDTRVG- 313 (479)
Q Consensus 246 ~~~l~sg~------~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~~l~s~s~---dg~I~iwD~~~~- 313 (479)
+-.+++|- -.|.+.+|....... +.+.||.+.-..+... +....+|+.+.. .+.++|-++...
T Consensus 163 kW~~l~gi~~~~~~v~G~mQLyS~er~~s-----Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~ 237 (1630)
T 1xi4_A 163 KWLLLTGISAQQNRVVGAMQLYSVDRKVS-----QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPP 237 (1630)
T ss_pred CeEEEEeeccCCCcccceeeeeecccccc-----hhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCc
Confidence 63344432 458899999866432 5677776655444442 222224444332 278999998553
Q ss_pred --Ccee-----eEEe---cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCC
Q 039302 314 --KSAL-----MSFK---AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHE 383 (479)
Q Consensus 314 --~~~~-----~~~~---~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~ 383 (479)
..+. ..+. +-..--.++..++.. .++..-+.-|.|++||+.++. ++..-+-...+|-..+-+...
T Consensus 238 ~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~-g~iy~itk~G~~~~~d~~t~~----~i~~~ris~~~iF~~~~~~~~ 312 (1630)
T 1xi4_A 238 TGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITKYGYIHLYDLETGT----CIYMNRISGETIFVTAPHEAT 312 (1630)
T ss_pred cCCCCCccccccccCCcccccCcceEEEecccc-CEEEEEecCceEEEEecccch----hhhhccccCCceEEeccCCCC
Confidence 1111 0111 112223456667766 577777889999999999987 555444445555444444333
Q ss_pred CCEEEEEeCCCcEEEEECC
Q 039302 384 GSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 384 ~~~las~s~Dg~I~iwdl~ 402 (479)
+.+++ ....|.|.--.+.
T Consensus 313 ~g~~~-vnr~G~vl~v~v~ 330 (1630)
T 1xi4_A 313 AGIIG-VNRKGQVLSVCVE 330 (1630)
T ss_pred CceEE-EcCCceEEEEEEc
Confidence 23333 3355555544443
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.57 E-value=1.5 Score=40.18 Aligned_cols=142 Identities=8% Similarity=0.190 Sum_probs=72.3
Q ss_pred eEEEEeCC------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC---------CCcEEEEEcCC
Q 039302 248 RLVSGDCN------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV---------DGNIAIWDTRV 312 (479)
Q Consensus 248 ~l~sg~~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~---------dg~I~iwD~~~ 312 (479)
+++.|+.+ ..+.+||+.+. .|..... +.........+.+ ++. +++.|+. -..+.+||+.+
T Consensus 104 iyv~GG~~~~~~~~~~~~~~d~~~~-~W~~~~~-~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 104 IYTSGGSEVGNSALYLFECYDTRTE-SWHTKPS-MLTQRCSHGMVEA--NGL-IYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp EEEECCBBTTBSCCCCEEEEETTTT-EEEEECC-CSSCCBSCEEEEE--TTE-EEEECCEESCTTTCEECCCEEEEETTT
T ss_pred EEEECCCCCCCcEeeeEEEEeCCCC-ceEeCCC-CcCCcceeEEEEE--CCE-EEEECCCCCCCCcccccceEEEeCCCC
Confidence 66666654 46888998763 3432111 1111111122222 344 6777653 34588999987
Q ss_pred CCceeeEEec---CCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCC
Q 039302 313 GKSALMSFKA---HNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEG 384 (479)
Q Consensus 313 ~~~~~~~~~~---h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~ 384 (479)
.. -..+.. ....-..+.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++
T Consensus 179 ~~--W~~~~~~p~~r~~~~~~~~--~~-~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~ 248 (306)
T 3ii7_A 179 ET--WTELCPMIEARKNHGLVFV--KD-KIFAVGGQNGLGGLDNVEYYDIKLNE--WKMVSPMPWKGVTVKCAAV---GS 248 (306)
T ss_dssp TE--EEEECCCSSCCBSCEEEEE--TT-EEEEECCEETTEEBCCEEEEETTTTE--EEECCCCSCCBSCCEEEEE---TT
T ss_pred Ce--EEECCCccchhhcceEEEE--CC-EEEEEeCCCCCCCCceEEEeeCCCCc--EEECCCCCCCccceeEEEE---CC
Confidence 63 112211 1111222233 34 677877754 358899988754 1122222211122233333 34
Q ss_pred CEEEEEeCC-----CcEEEEECCCC
Q 039302 385 STLAVSSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 385 ~~las~s~D-----g~I~iwdl~~~ 404 (479)
.+++.|+.+ +.|.+||+...
T Consensus 249 ~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 249 IVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp EEEEEECBCSSSBCCEEEEEETTTT
T ss_pred EEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 788888854 45788888765
No 324
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.45 E-value=2.2 Score=37.29 Aligned_cols=158 Identities=9% Similarity=0.059 Sum_probs=80.8
Q ss_pred EEecC--CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEec--CCCCceEEE
Q 039302 164 RKVAH--QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFG--GHKDEGYAI 239 (479)
Q Consensus 164 ~~~~H--~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~l 239 (479)
+.+++ =..+..++|+|++ .|.|. .+|.++-.+..+..... - ......+- +-. .-.++
T Consensus 33 ~~iG~~gw~~~~~laf~P~G-~LYaV--~~G~Ly~~~~~t~~~~~--W-------------~~s~t~IG~~Gw~-~F~a~ 93 (236)
T 1tl2_A 33 TLIGKGGWSNFKFLFLSPGG-ELYGV--LNDKIYKGTPPTHDNDN--W-------------MGRAKKIGNGGWN-QFQFL 93 (236)
T ss_dssp EEEESSSCTTCSEEEECTTS-CEEEE--ETTEEEEESCCCSTTCC--H-------------HHHCEEEECSCGG-GCSEE
T ss_pred cccCccccccceeEEECCCc-cEEEE--eCCeEEEECCCCCCccc--c-------------cccccEecccccc-cceEE
Confidence 34444 2478899999988 56666 66765555543210000 0 00001110 111 13688
Q ss_pred EeCCCCCCeEEEEeCCCeEEEEecCCC--CccccCCCCccc-CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCc-
Q 039302 240 DWNPVAPGRLVSGDCNSCIHLWEPASD--ATWNVDPNPFIG-HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKS- 315 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~dg~I~lwd~~~~--~~~~~~~~~~~~-h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~- 315 (479)
.|.|++. +.++ .||.|+-++..+. ..|.-....+-. -=..+..|.|.|++. +.++. |+.+.-+..-+...
T Consensus 94 ~fD~~G~-LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~--dg~lyr~~~P~~~~~ 167 (236)
T 1tl2_A 94 FFDPNGY-LYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH--GQQFYKALPPVSNQD 167 (236)
T ss_dssp EECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE--TTEEEEECCCSSTTC
T ss_pred EECCCCC-EEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe--CCcEEecCCCCCCCc
Confidence 8998885 4444 5699988887332 223211111100 114679999999998 66555 77754322221110
Q ss_pred ----eeeEE-ecCCCCEEEEEEcCCCCcEEEEEeCCCeE
Q 039302 316 ----ALMSF-KAHNADVNVISWNRLASCLLASGSDDGTF 349 (479)
Q Consensus 316 ----~~~~~-~~h~~~v~~l~~~p~~~~~l~sgs~dg~i 349 (479)
....+ ...-....-+.|.+++ .++++. +|.+
T Consensus 168 ~wl~~~~~~g~~g~~~yr~l~f~~~G-~l~~v~--~g~~ 203 (236)
T 1tl2_A 168 NWLARATKIGQGGWDTFKFLFFSSVG-TLFGVQ--GGKF 203 (236)
T ss_dssp CHHHHCEEEESSSGGGEEEEEECTTS-CEEEEE--TTEE
T ss_pred ccccccceeccCCcceEEEEEECCCC-cEEEEe--CCeE
Confidence 01111 1222344556788888 666655 6633
No 325
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=93.34 E-value=5.1 Score=37.30 Aligned_cols=195 Identities=12% Similarity=0.163 Sum_probs=118.6
Q ss_pred EecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCC
Q 039302 177 AMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNS 256 (479)
Q Consensus 177 ~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg 256 (479)
.+|.. .++|--. ..+++|||++. ...+..+.- ...|.-=.|-... .|+-.. +.
T Consensus 74 MnP~~-~ViALra-g~~LQiFnlet---------------------K~klks~~~-~e~VvfWkWis~~--~L~lVT-~t 126 (365)
T 2xzh_A 74 MNPAS-KVIALKA-GKTLQIFNIEM---------------------KSKMKAHTM-TDDVTFWKWISLN--TVALVT-DN 126 (365)
T ss_dssp ECSSS-SEEEEEE-TTEEEEEETTT---------------------TEEEEEEEC-SSCEEEEEECSSS--EEEEEE-SS
T ss_pred eCCCc-cEEEEec-CCeEEEechHH---------------------hhhhcceec-CCccEEEEecCCC--eEEEEc-CC
Confidence 36655 6777655 67899999998 344444443 3466666776554 455555 56
Q ss_pred eEEEEecCCCCccccCCCCcccC----CCcEEEEEECCCCCcEEEEEe-------CCCcEEEEEcCCCCceeeEEecCCC
Q 039302 257 CIHLWEPASDATWNVDPNPFIGH----AASVEDLQWSPTESDVFASCS-------VDGNIAIWDTRVGKSALMSFKAHNA 325 (479)
Q Consensus 257 ~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s-------~dg~I~iwD~~~~~~~~~~~~~h~~ 325 (479)
.|+-|++....... +.|..| ...|..-..+++.+ .++..+ ..|.+.+|..... ..+.+.+|..
T Consensus 127 aVyHWs~~~~s~P~---kvFdR~~~L~~~QIInY~~d~~~k-W~~l~GI~~~~~~v~G~mQLYS~er~--~sQ~ieGhaa 200 (365)
T 2xzh_A 127 AVYHWSMEGESQPV---KMFDRHSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVDRK--VSQPIEGHAA 200 (365)
T ss_dssp EEEEEESSTTCCCE---EEEECCGGGTTCEEEEEEECTTSC-EEEEEEEEEETTEEEEEEEEEETTTT--EEEEECCSEE
T ss_pred cEEEEcccCCCCCc---eeeecchhcccceEEEEEECCCCC-EEEEEeEeccCCccceeEEEEeeccc--ccceeeeeee
Confidence 99999996532211 222222 35677778888888 544433 2478899998875 3556677765
Q ss_pred CEEEEEEc--CCCCcEEEEEeC---CCeEEEEeCCCCC-CC----CceEEEeec---CCCCeEEEEEeCCCCCEEEEEeC
Q 039302 326 DVNVISWN--RLASCLLASGSD---DGTFSIHDLRLLK-GG----DSVVAHFEY---HKHPVTSIEWSPHEGSTLAVSSA 392 (479)
Q Consensus 326 ~v~~l~~~--p~~~~~l~sgs~---dg~i~iwDlr~~~-~~----~~~~~~~~~---h~~~I~~v~~sp~~~~~las~s~ 392 (479)
....+... +....+|+.+.. .+.++|-++.... .. ...+..+-. -.+-..++..++.. .++..-+.
T Consensus 201 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~ky-gviyviTK 279 (365)
T 2xzh_A 201 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLITK 279 (365)
T ss_dssp EEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTT-TEEEEEET
T ss_pred eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccC-CEEEEEeC
Confidence 44433332 112124443332 2589999985541 10 011111211 23445688888866 78888889
Q ss_pred CCcEEEEECCCCC
Q 039302 393 DNQLTIWDLSLEK 405 (479)
Q Consensus 393 Dg~I~iwdl~~~~ 405 (479)
-|.|++||+.++.
T Consensus 280 ~G~ihlyDleTgt 292 (365)
T 2xzh_A 280 YGYIHLYDLETGT 292 (365)
T ss_dssp TSEEEEEETTTCC
T ss_pred CcEEEEEEcccCc
Confidence 9999999999984
No 326
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=93.19 E-value=4.9 Score=36.67 Aligned_cols=144 Identities=10% Similarity=0.114 Sum_probs=71.5
Q ss_pred eEEEEeCC----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC------CcEEEEEcCCCCce-
Q 039302 248 RLVSGDCN----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD------GNIAIWDTRVGKSA- 316 (479)
Q Consensus 248 ~l~sg~~d----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d------g~I~iwD~~~~~~~- 316 (479)
.++.|+.+ ..+.+||+.+. .|..... +.........+.+ ++. +++.|+.+ ..+.+||..+..-.
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~-~W~~~~~-~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKD-SWYSKLG-PPTPRDSLAACAA--EGK-IYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTT-EEEEEEC-CSSCCBSCEEEEE--TTE-EEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred EEEEeCCCCCCcceEEEEeCCCC-eEEECCC-CCccccceeEEEE--CCE-EEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 66666644 57888998764 3332111 1111111122222 344 77777765 45889998876311
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeC---------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSD---------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTL 387 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~---------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~l 387 (479)
+..+........++.+ ++ .+++.|+. -..+.+||+.+.. +..+..+......-..+.+ ++.++
T Consensus 133 ~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~i~ 204 (306)
T 3ii7_A 133 KPSMLTQRCSHGMVEA--NG-LIYVCGGSLGNNVSGRVLNSCEVYDPATET--WTELCPMIEARKNHGLVFV---KDKIF 204 (306)
T ss_dssp ECCCSSCCBSCEEEEE--TT-EEEEECCEESCTTTCEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEE
T ss_pred CCCCcCCcceeEEEEE--CC-EEEEECCCCCCCCcccccceEEEeCCCCCe--EEECCCccchhhcceEEEE---CCEEE
Confidence 1111111111122233 34 67777764 3458899988764 1122212111111122222 34777
Q ss_pred EEEeCC-----CcEEEEECCCC
Q 039302 388 AVSSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 388 as~s~D-----g~I~iwdl~~~ 404 (479)
+.|+.+ ..+.+||+...
T Consensus 205 v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 205 AVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp EECCEETTEEBCCEEEEETTTT
T ss_pred EEeCCCCCCCCceEEEeeCCCC
Confidence 777754 45888998765
No 327
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=93.06 E-value=1.4 Score=40.41 Aligned_cols=144 Identities=13% Similarity=0.163 Sum_probs=71.6
Q ss_pred eEEEEeCCC-----eEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-------CcEEEEEcCCCCc
Q 039302 248 RLVSGDCNS-----CIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-------GNIAIWDTRVGKS 315 (479)
Q Consensus 248 ~l~sg~~dg-----~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-------g~I~iwD~~~~~~ 315 (479)
+++.|+.++ .+.+||+.+. .|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+..-
T Consensus 111 iyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 111 LYAVGGFDGSTGLSSVEAYNIKSN-EWFHVA-PMNTRRSSVGVGVV--GGL-LYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp EEEEEEECSSCEEEEEEEEETTTT-EEEEEC-CCSSCCBSCEEEEE--TTE-EEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred EEEEcCCCCCccCceEEEEeCCCC-eEeecC-CCCCcccCceEEEE--CCE-EEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 666666553 5778888663 343211 11111111122222 344 77776643 3588999887631
Q ss_pred e-eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 316 A-LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 316 ~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
. +..+.........+.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.
T Consensus 186 ~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~---~~~i~v~ 257 (302)
T 2xn4_A 186 TYIAEMSTRRSGAGVGVL--NN-LLYAVGGHDGPLVRKSVEVYDPTTNA--WRQVADMNMCRRNAGVCAV---NGLLYVV 257 (302)
T ss_dssp EEECCCSSCCBSCEEEEE--TT-EEEEECCBSSSSBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEE
T ss_pred EECCCCccccccccEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCC--EeeCCCCCCccccCeEEEE---CCEEEEE
Confidence 1 1111111111223333 34 788888765 368899998754 1122111111111122222 3478888
Q ss_pred EeCCC-----cEEEEECCCC
Q 039302 390 SSADN-----QLTIWDLSLE 404 (479)
Q Consensus 390 ~s~Dg-----~I~iwdl~~~ 404 (479)
|+.++ .|.+||+...
T Consensus 258 GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 258 GGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp CCBCSSSBCCCEEEEETTTT
T ss_pred CCcCCCcccccEEEEcCCCC
Confidence 87653 4888888765
No 328
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=92.98 E-value=3.1 Score=37.93 Aligned_cols=145 Identities=11% Similarity=0.165 Sum_probs=73.7
Q ss_pred eEEEEeCC-----CeEEEEecCCCCc--cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCc
Q 039302 248 RLVSGDCN-----SCIHLWEPASDAT--WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRVGKS 315 (479)
Q Consensus 248 ~l~sg~~d-----g~I~lwd~~~~~~--~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~~~~ 315 (479)
.++.|+.+ ..+.+||+.+... |.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+..-
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~-~~p~~r~~~~~~~~--~~~-lyv~GG~~~~~~~~~~~~~d~~~~~W 140 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVA-PMNVRRGLAGATTL--GDM-IYVSGGFDGSRRHTSMERYDPNIDQW 140 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEEC-CCSSCCBSCEEEEE--TTE-EEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECC-CCCCCccceeEEEE--CCE-EEEEcccCCCcccceEEEEcCCCCeE
Confidence 66666654 4688999877541 33211 11111111122222 344 77777654 3588899887631
Q ss_pred e-eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 316 A-LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 316 ~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
. +...........++.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.
T Consensus 141 ~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~d~~~~~--W~~~~~~p~~r~~~~~~~~---~~~i~v~ 212 (301)
T 2vpj_A 141 SMLGDMQTAREGAGLVVA--SG-VIYCLGGYDGLNILNSVEKYDPHTGH--WTNVTPMATKRSGAGVALL---NDHIYVV 212 (301)
T ss_dssp EEEEECSSCCBSCEEEEE--TT-EEEEECCBCSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEE
T ss_pred EECCCCCCCcccceEEEE--CC-EEEEECCCCCCcccceEEEEeCCCCc--EEeCCCCCcccccceEEEE---CCEEEEE
Confidence 1 1111111111222233 34 777887765 458899987764 1122112111111222333 3477888
Q ss_pred EeCC-----CcEEEEECCCC
Q 039302 390 SSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 390 ~s~D-----g~I~iwdl~~~ 404 (479)
|+.+ +.|.+||+.+.
T Consensus 213 GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 213 GGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp CCBCSSSBCCCEEEEETTTT
T ss_pred eCCCCCcccceEEEEeCCCC
Confidence 8764 46889998765
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=92.66 E-value=7.9 Score=37.60 Aligned_cols=196 Identities=12% Similarity=0.155 Sum_probs=119.3
Q ss_pred EEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCC
Q 039302 176 RAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCN 255 (479)
Q Consensus 176 ~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~d 255 (479)
-.+|.. .++|--. ..++.|||+.. ...+..+.-. ..|.-=.|-... .|+-.+ +
T Consensus 72 IMnP~~-~iiALra-g~~lQiFnle~---------------------K~klks~~~~-e~VvfWkWis~~--~l~lVT-~ 124 (494)
T 1bpo_A 72 IMNPAS-KVIALKA-GKTLQIFNIEM---------------------KSKMKAHTMT-DDVTFWKWISLN--TVALVT-D 124 (494)
T ss_dssp EECSSS-SCEEEEE-TTEEEEEETTT---------------------TEEEEEEECS-SCCCEEEEEETT--EEEEEC-S
T ss_pred eeCCCC-cEEEEec-CCeEEEEchHH---------------------hhhhcceecC-CCceEEEecCCC--eEEEEc-C
Confidence 345555 5666644 67899999987 3444444433 355556665543 455555 5
Q ss_pred CeEEEEecCCCCccccCCCCcccC----CCcEEEEEECCCCCcEEEEEe-------CCCcEEEEEcCCCCceeeEEecCC
Q 039302 256 SCIHLWEPASDATWNVDPNPFIGH----AASVEDLQWSPTESDVFASCS-------VDGNIAIWDTRVGKSALMSFKAHN 324 (479)
Q Consensus 256 g~I~lwd~~~~~~~~~~~~~~~~h----~~~V~~l~~sp~~~~~l~s~s-------~dg~I~iwD~~~~~~~~~~~~~h~ 324 (479)
..|+-|++....... +.|..| ...|..-..+++.+ +++..+ ..|.+.+|...... .+.+.+|.
T Consensus 125 taVyHWsi~~~s~P~---kvFdR~~~L~~~QIInY~~d~~~k-W~~l~GI~~~~~~v~G~mQLYS~er~~--sQ~ieGha 198 (494)
T 1bpo_A 125 NAVYHWSMEGESQPV---KMFDRHSSLAGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVDRKV--SQPIEGHA 198 (494)
T ss_dssp SEEEEEESSSSCCCE---EEEECCGGGTTCEEEEEEECTTSS-EEEEEEEEEETTEEEEEEEEEESTTCC--EEEECCSE
T ss_pred CeeEEecccCCCCch---hheecchhcccceEEEEEECCCCC-eEEEEeecccCCcccceEEEeeccccc--cchheeee
Confidence 699999996532211 222222 35677778899888 554433 35789999998763 45667776
Q ss_pred CCEEEEEEcC--CCCcEEEEEeCC---CeEEEEeCCCCCCCC-----ceEEEee---cCCCCeEEEEEeCCCCCEEEEEe
Q 039302 325 ADVNVISWNR--LASCLLASGSDD---GTFSIHDLRLLKGGD-----SVVAHFE---YHKHPVTSIEWSPHEGSTLAVSS 391 (479)
Q Consensus 325 ~~v~~l~~~p--~~~~~l~sgs~d---g~i~iwDlr~~~~~~-----~~~~~~~---~h~~~I~~v~~sp~~~~~las~s 391 (479)
.....+...- ....+|+.+... +.++|-++....... ..+..+- .-.+--.++..++.. .++..-+
T Consensus 199 a~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~ky-gviyviT 277 (494)
T 1bpo_A 199 ASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKH-DVVFLIT 277 (494)
T ss_dssp EEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTT-TEEEEEE
T ss_pred eeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccC-CEEEEEe
Confidence 6554444432 112344444443 789999986541101 1111111 123345688899866 7788888
Q ss_pred CCCcEEEEECCCCC
Q 039302 392 ADNQLTIWDLSLEK 405 (479)
Q Consensus 392 ~Dg~I~iwdl~~~~ 405 (479)
.-|.|++||+.++.
T Consensus 278 K~G~i~lyDleTgt 291 (494)
T 1bpo_A 278 KYGYIHLYDLETGT 291 (494)
T ss_dssp TTSEEEEEETTTCC
T ss_pred cCceEEEEecccce
Confidence 99999999999984
No 330
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=91.90 E-value=10 Score=37.18 Aligned_cols=116 Identities=11% Similarity=0.139 Sum_probs=62.8
Q ss_pred EecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCcccc-C-CCCcc--cCCCcEEEEEECCC---CCcEEEEEe
Q 039302 228 KFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNV-D-PNPFI--GHAASVEDLQWSPT---ESDVFASCS 300 (479)
Q Consensus 228 ~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~-~-~~~~~--~h~~~V~~l~~sp~---~~~~l~s~s 300 (479)
.+...-...++|+|.|++. ++++-...+.|++++..++....+ . ...+. .....+..|+|+|+ +..++++-+
T Consensus 21 ~~a~~l~~P~~~a~~pdG~-l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 21 VILSNLNKPHALLWGPDNQ-IWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp EEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred EEECCCCCceEEEEcCCCc-EEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 3333344678999999986 555544334798887654332111 0 11111 12456889999995 443555544
Q ss_pred C------------CCcEEEEEcCCCC------ceeeE-Ee-cCCCCEEEEEEcCCCCcEEEEEeC
Q 039302 301 V------------DGNIAIWDTRVGK------SALMS-FK-AHNADVNVISWNRLASCLLASGSD 345 (479)
Q Consensus 301 ~------------dg~I~iwD~~~~~------~~~~~-~~-~h~~~v~~l~~~p~~~~~l~sgs~ 345 (479)
. ...|.-|+..... ..+.. +. ........|.|.|++ .++++.++
T Consensus 100 ~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG-~Lyv~~Gd 163 (454)
T 1cru_A 100 FKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQ-KIYYTIGD 163 (454)
T ss_dssp EECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTS-CEEEEECC
T ss_pred ccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCC-eEEEEECC
Confidence 2 2345555543221 11111 21 122357999999999 56665443
No 331
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=90.96 E-value=5.7 Score=36.44 Aligned_cols=102 Identities=8% Similarity=0.127 Sum_probs=52.7
Q ss_pred EEEEEeCC--------CcEEEEEcCCCCc-eeeEEecCCCCEEEEEEcCCCCcEEEEEeC-C-----CeEEEEeCCCCCC
Q 039302 295 VFASCSVD--------GNIAIWDTRVGKS-ALMSFKAHNADVNVISWNRLASCLLASGSD-D-----GTFSIHDLRLLKG 359 (479)
Q Consensus 295 ~l~s~s~d--------g~I~iwD~~~~~~-~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~-d-----g~i~iwDlr~~~~ 359 (479)
+++.|+.+ ..+.+||..+..- .+..+........++.+ ++ .+++.|+. + ..+.+||+.+..
T Consensus 101 lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~- 176 (315)
T 4asc_A 101 IYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MD-LVYVIGGKGSDRKCLNKMCVYDPKKFE- 176 (315)
T ss_dssp EEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT-EEEEECCBCTTSCBCCCEEEEETTTTE-
T ss_pred EEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CC-EEEEEeCCCCCCcccceEEEEeCCCCe-
Confidence 77777742 4588999887531 11111111111222222 33 67777776 2 468899988754
Q ss_pred CCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC-----cEEEEECCCC
Q 039302 360 GDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN-----QLTIWDLSLE 404 (479)
Q Consensus 360 ~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg-----~I~iwdl~~~ 404 (479)
+..+..+......-..+.+ ++.+++.|+.++ .+.+||+.+.
T Consensus 177 -W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 177 -WKELAPMQTARSLFGATVH---DGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp -EEECCCCSSCCBSCEEEEE---TTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred -EEECCCCCCchhceEEEEE---CCEEEEEeccCCCCccceEEEEECCCC
Confidence 1112112111111222333 347888887654 4778888765
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=90.45 E-value=5.1 Score=36.65 Aligned_cols=136 Identities=12% Similarity=0.128 Sum_probs=67.7
Q ss_pred CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-----CcEEEEEcCCCCc-eeeEEecCCCCEEE
Q 039302 256 SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-----GNIAIWDTRVGKS-ALMSFKAHNADVNV 329 (479)
Q Consensus 256 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-----g~I~iwD~~~~~~-~~~~~~~h~~~v~~ 329 (479)
..+.+||+.+. .|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+..- .+..+........+
T Consensus 90 ~~~~~~d~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~ 164 (308)
T 1zgk_A 90 SALDCYNPMTN-QWSPCA-PMSVPRNRIGVGVI--DGH-IYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGV 164 (308)
T ss_dssp CCEEEEETTTT-EEEECC-CCSSCCBTCEEEEE--TTE-EEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEE
T ss_pred ceEEEECCCCC-eEeECC-CCCcCccccEEEEE--CCE-EEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEE
Confidence 46888888763 343221 11111111222233 344 77777643 4588899887531 11111111111223
Q ss_pred EEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC-----CcEEEE
Q 039302 330 ISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD-----NQLTIW 399 (479)
Q Consensus 330 l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D-----g~I~iw 399 (479)
+.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.|+.+ ..+.+|
T Consensus 165 ~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 165 AVL--NR-LLYAVGGFDGTNRLNSAECYYPERNE--WRMITAMNTIRSGAGVCVL---HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp EEE--TT-EEEEECCBCSSCBCCCEEEEETTTTE--EEECCCCSSCCBSCEEEEE---TTEEEEECCBCSSSBCCCEEEE
T ss_pred EEE--CC-EEEEEeCCCCCCcCceEEEEeCCCCe--EeeCCCCCCccccceEEEE---CCEEEEEeCCCCCCccceEEEE
Confidence 333 34 777887765 458899987654 1111111111112223333 34778888765 568899
Q ss_pred ECCCC
Q 039302 400 DLSLE 404 (479)
Q Consensus 400 dl~~~ 404 (479)
|+...
T Consensus 237 d~~~~ 241 (308)
T 1zgk_A 237 DVETE 241 (308)
T ss_dssp ETTTT
T ss_pred eCCCC
Confidence 98765
No 333
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=90.09 E-value=20 Score=37.46 Aligned_cols=192 Identities=12% Similarity=0.125 Sum_probs=103.1
Q ss_pred cceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeE
Q 039302 170 GCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRL 249 (479)
Q Consensus 170 ~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l 249 (479)
..|.++....++ .|-.|+.+| +..||..... +. .+ .......|.++... + +.|
T Consensus 63 ~~i~~i~~d~~g--~lWigT~~G-l~~yd~~~~~--f~----------------~~---~~~~~~~i~~i~~~-~--g~l 115 (758)
T 3ott_A 63 TRIYCGVIIDNT--YLYMGTDNG-ILVYNYRADR--YE----------------QP---ETDFPTDVRTMALQ-G--DTL 115 (758)
T ss_dssp SCEEEEEEETTT--EEEEEETTE-EEEEETTTTE--EC----------------CC---SCCCCSCEEEEEEE-T--TEE
T ss_pred ceEEEEEEcCCC--cEEEEeCCC-eEEEeCCCCE--EE----------------Cc---ccCCCceEEEEEec-C--CcE
Confidence 457787777766 333445665 7889876521 10 00 00112246666542 2 367
Q ss_pred EEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe--c----C
Q 039302 250 VSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK--A----H 323 (479)
Q Consensus 250 ~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~--~----h 323 (479)
..|+.+ -|..++..+............-....|.++....++. +.+ |+..| |..+|..+.. ...+. . .
T Consensus 116 Wigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWi-gt~~G-l~~~~~~~~~--~~~~~~~~~~~~~ 189 (758)
T 3ott_A 116 WLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQ-IYV-GTYNG-LCRYIPSNGK--FEGIPLPVHSSQS 189 (758)
T ss_dssp EEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCC-EEE-EETTE-EEEEETTTTE--EEEECCCCCTTCS
T ss_pred EEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCC-EEE-EeCCC-HhhCccCCCc--eEEecCCCccccc
Confidence 777755 6788887654321110000001134688888888777 444 44444 7778876653 22221 1 1
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee-cCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECC
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE-YHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLS 402 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~-~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~ 402 (479)
...|.++...+.+ ..|..|+. +.+..+|..+.. +..+. .....|.++....++ .+. .|+.+ -|.+++..
T Consensus 190 ~~~i~~i~~d~~~-~~lWigt~-~Gl~~~~~~~~~-----~~~~~~l~~~~i~~i~~d~~g-~lW-igT~~-Gl~~~~~~ 259 (758)
T 3ott_A 190 NLFVNSLLEDTTR-QCVWIGTE-GYLFQYFPSTGQ-----IKQTEAFHNNSIKSLALDGNG-DLL-AGTDN-GLYVYHND 259 (758)
T ss_dssp SCCEEEEEEETTT-TEEEEEEE-EEEEEEETTTTE-----EEEEEEEEEEEEEEEEECTTC-CEE-EEETT-EEEEECCT
T ss_pred cceeEEEEEECCC-CEEEEEEC-CCCeEEcCCCCe-----EEeccCCCCCeEEEEEEcCCC-CEE-EEeCC-ceeEEecC
Confidence 2348888888766 44444553 468888877643 22121 123457888877644 443 34444 47778765
Q ss_pred CC
Q 039302 403 LE 404 (479)
Q Consensus 403 ~~ 404 (479)
..
T Consensus 260 ~~ 261 (758)
T 3ott_A 260 TT 261 (758)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 334
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=89.76 E-value=4.5 Score=36.82 Aligned_cols=144 Identities=14% Similarity=0.206 Sum_probs=71.2
Q ss_pred eEEEEeCC-----CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC-----cEEEEEcCCCCce-
Q 039302 248 RLVSGDCN-----SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG-----NIAIWDTRVGKSA- 316 (479)
Q Consensus 248 ~l~sg~~d-----g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg-----~I~iwD~~~~~~~- 316 (479)
.++.|+.+ ..+.+||+.+. .|.... .+.........+.+ ++. +++.|+.++ .+.+||+.+..-.
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 138 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKD-QWTSVA-NMRDRRSTLGAAVL--NGL-LYAVGGFDGSTGLSSVEAYNIKSNEWFH 138 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTT-EEEEEC-CCSSCCBSCEEEEE--TTE-EEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred EEEEeCcCCCccccceEEECCCCC-ceeeCC-CCCccccceEEEEE--CCE-EEEEcCCCCCccCceEEEEeCCCCeEee
Confidence 66666644 35888888763 333211 11111111122222 344 777777653 4778888775311
Q ss_pred eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-------CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEE
Q 039302 317 LMSFKAHNADVNVISWNRLASCLLASGSDD-------GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAV 389 (479)
Q Consensus 317 ~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-------g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las 389 (479)
+..+........++.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.+++.
T Consensus 139 ~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~iyv~ 210 (302)
T 2xn4_A 139 VAPMNTRRSSVGVGVV--GG-LLYAVGGYDVASRQCLSTVECYNATTNE--WTYIAEMSTRRSGAGVGVL---NNLLYAV 210 (302)
T ss_dssp ECCCSSCCBSCEEEEE--TT-EEEEECCEETTTTEECCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEE
T ss_pred cCCCCCcccCceEEEE--CC-EEEEEeCCCCCCCccccEEEEEeCCCCc--EEECCCCccccccccEEEE---CCEEEEE
Confidence 1111111111222233 33 677777653 358899987754 1122222211112222333 3478888
Q ss_pred EeCC-----CcEEEEECCCC
Q 039302 390 SSAD-----NQLTIWDLSLE 404 (479)
Q Consensus 390 ~s~D-----g~I~iwdl~~~ 404 (479)
|+.+ +.+.+||+.+.
T Consensus 211 GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTT
T ss_pred CCCCCCcccceEEEEeCCCC
Confidence 8764 36888998765
No 335
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=88.69 E-value=12 Score=34.16 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=63.4
Q ss_pred EEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-------CcEEEEEcCCCCceeeEEecCC---CCE
Q 039302 258 IHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-------GNIAIWDTRVGKSALMSFKAHN---ADV 327 (479)
Q Consensus 258 I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-------g~I~iwD~~~~~~~~~~~~~h~---~~v 327 (479)
+.+||+.+ ..|.... .+.........+.+ ++. +++.|+.+ ..+.+||+.+.. -..+.... ..-
T Consensus 80 ~~~~d~~~-~~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~ 152 (318)
T 2woz_A 80 FFQLDNVS-SEWVGLP-PLPSARCLFGLGEV--DDK-IYVVAGKDLQTEASLDSVLCYDPVAAK--WSEVKNLPIKVYGH 152 (318)
T ss_dssp EEEEETTT-TEEEECS-CBSSCBCSCEEEEE--TTE-EEEEEEEBTTTCCEEEEEEEEETTTTE--EEEECCCSSCEESC
T ss_pred EEEEeCCC-CcEEECC-CCCccccccceEEE--CCE-EEEEcCccCCCCcccceEEEEeCCCCC--EeECCCCCCccccc
Confidence 77788765 3443211 11111111122222 344 77777754 247888888753 11111100 111
Q ss_pred EEEEEcCCCCcEEEEEeC------CCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCC-----CcE
Q 039302 328 NVISWNRLASCLLASGSD------DGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSAD-----NQL 396 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~------dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~D-----g~I 396 (479)
.++. .++ .+++.|+. -..+.+||+.+.. +..+..+.........+.+ ++.+++.|+.+ ..+
T Consensus 153 ~~~~--~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~ 224 (318)
T 2woz_A 153 NVIS--HNG-MIYCLGGKTDDKKCTNRVFIYNPKKGD--WKDLAPMKTPRSMFGVAIH---KGKIVIAGGVTEDGLSASV 224 (318)
T ss_dssp EEEE--ETT-EEEEECCEESSSCBCCCEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEEEEEETTEEEEEE
T ss_pred EEEE--ECC-EEEEEcCCCCCCCccceEEEEcCCCCE--EEECCCCCCCcccceEEEE---CCEEEEEcCcCCCCccceE
Confidence 2222 234 67777764 2358999988764 1122112111111122332 34777777754 346
Q ss_pred EEEECCCCC
Q 039302 397 TIWDLSLEK 405 (479)
Q Consensus 397 ~iwdl~~~~ 405 (479)
.+||+.+..
T Consensus 225 ~~yd~~~~~ 233 (318)
T 2woz_A 225 EAFDLKTNK 233 (318)
T ss_dssp EEEETTTCC
T ss_pred EEEECCCCe
Confidence 788887653
No 336
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=87.77 E-value=16 Score=33.41 Aligned_cols=141 Identities=15% Similarity=0.253 Sum_probs=68.2
Q ss_pred eEEEEeCC-------CeEEEEecCCCCccccCC---CCcccCCCcEEEEEECCCCCcEEEEEeC------CCcEEEEEcC
Q 039302 248 RLVSGDCN-------SCIHLWEPASDATWNVDP---NPFIGHAASVEDLQWSPTESDVFASCSV------DGNIAIWDTR 311 (479)
Q Consensus 248 ~l~sg~~d-------g~I~lwd~~~~~~~~~~~---~~~~~h~~~V~~l~~sp~~~~~l~s~s~------dg~I~iwD~~ 311 (479)
.++.|+.+ ..+.+||+.+ ..|.... ....+|. .+. .++. +++.|+. -..+.+||+.
T Consensus 112 iyv~GG~~~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~----~~~--~~~~-iyv~GG~~~~~~~~~~~~~yd~~ 183 (318)
T 2woz_A 112 IYVVAGKDLQTEASLDSVLCYDPVA-AKWSEVKNLPIKVYGHN----VIS--HNGM-IYCLGGKTDDKKCTNRVFIYNPK 183 (318)
T ss_dssp EEEEEEEBTTTCCEEEEEEEEETTT-TEEEEECCCSSCEESCE----EEE--ETTE-EEEECCEESSSCBCCCEEEEETT
T ss_pred EEEEcCccCCCCcccceEEEEeCCC-CCEeECCCCCCcccccE----EEE--ECCE-EEEEcCCCCCCCccceEEEEcCC
Confidence 66666643 2578888866 3443211 1112221 222 2344 6777764 2458999998
Q ss_pred CCCce-eeEEecCCCCEEEEEEcCCCCcEEEEEeCC-----CeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCC
Q 039302 312 VGKSA-LMSFKAHNADVNVISWNRLASCLLASGSDD-----GTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGS 385 (479)
Q Consensus 312 ~~~~~-~~~~~~h~~~v~~l~~~p~~~~~l~sgs~d-----g~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~ 385 (479)
+..-. +...........++.+ ++ .+++.|+.+ ..+.+||+.+.. +..+..+.........+.+ ++.
T Consensus 184 ~~~W~~~~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~ 255 (318)
T 2woz_A 184 KGDWKDLAPMKTPRSMFGVAIH--KG-KIVIAGGVTEDGLSASVEAFDLKTNK--WEVMTEFPQERSSISLVSL---AGS 255 (318)
T ss_dssp TTEEEEECCCSSCCBSCEEEEE--TT-EEEEEEEEETTEEEEEEEEEETTTCC--EEECCCCSSCCBSCEEEEE---TTE
T ss_pred CCEEEECCCCCCCcccceEEEE--CC-EEEEEcCcCCCCccceEEEEECCCCe--EEECCCCCCcccceEEEEE---CCE
Confidence 76311 1111111111222333 34 677777654 357789987764 2122222211111122222 347
Q ss_pred EEEEEeCC--------------CcEEEEECCCC
Q 039302 386 TLAVSSAD--------------NQLTIWDLSLE 404 (479)
Q Consensus 386 ~las~s~D--------------g~I~iwdl~~~ 404 (479)
+++.|+.+ ..|.+||+.+.
T Consensus 256 i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 256 LYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp EEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred EEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 77777754 34667777654
No 337
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=87.59 E-value=16 Score=33.22 Aligned_cols=136 Identities=8% Similarity=0.107 Sum_probs=66.6
Q ss_pred CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeC-C-----CcEEEEEcCCCCc-eeeEEecCCCCEE
Q 039302 256 SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSV-D-----GNIAIWDTRVGKS-ALMSFKAHNADVN 328 (479)
Q Consensus 256 g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~-d-----g~I~iwD~~~~~~-~~~~~~~h~~~v~ 328 (479)
..+.+||+.+. .|.... .+.........+.+ ++. +++.|+. + ..+.+||+.+..- .+..+........
T Consensus 117 ~~~~~~d~~~~-~W~~~~-~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~ 191 (315)
T 4asc_A 117 DSVMCYDRLSF-KWGESD-PLPYVVYGHTVLSH--MDL-VYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFG 191 (315)
T ss_dssp CCEEEEETTTT-EEEECC-CCSSCCBSCEEEEE--TTE-EEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCE
T ss_pred ceEEEECCCCC-cEeECC-CCCCcccceeEEEE--CCE-EEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceE
Confidence 35888998763 444321 11111111122222 344 7777776 2 4689999887631 1111111111122
Q ss_pred EEEEcCCCCcEEEEEeCCC-----eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC---------
Q 039302 329 VISWNRLASCLLASGSDDG-----TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN--------- 394 (479)
Q Consensus 329 ~l~~~p~~~~~l~sgs~dg-----~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg--------- 394 (479)
++.+ ++ .+++.|+.++ .+.+||+.+.. +..+..+.........+.+ ++.+++.|+.++
T Consensus 192 ~~~~--~~-~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~~~~ 263 (315)
T 4asc_A 192 ATVH--DG-RIIVAAGVTDTGLTSSAEVYSITDNK--WAPFEAFPQERSSLSLVSL---VGTLYAIGGFATLETESGELV 263 (315)
T ss_dssp EEEE--TT-EEEEEEEECSSSEEEEEEEEETTTTE--EEEECCCSSCCBSCEEEEE---TTEEEEEEEEEEEECTTSCEE
T ss_pred EEEE--CC-EEEEEeccCCCCccceEEEEECCCCe--EEECCCCCCcccceeEEEE---CCEEEEECCccccCcCCcccc
Confidence 3333 34 7888887654 58899988764 1122222111112223333 347777777642
Q ss_pred -----cEEEEECCCC
Q 039302 395 -----QLTIWDLSLE 404 (479)
Q Consensus 395 -----~I~iwdl~~~ 404 (479)
.|.+||+.+.
T Consensus 264 ~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 264 PTELNDIWRYNEEEK 278 (315)
T ss_dssp EEEEEEEEEEETTTT
T ss_pred ccccCcEEEecCCCC
Confidence 3667777654
No 338
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=87.47 E-value=20 Score=34.02 Aligned_cols=161 Identities=10% Similarity=-0.004 Sum_probs=77.7
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc-C--------CCcEEEEEECCCCCcEEEEEeCCCc
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG-H--------AASVEDLQWSPTESDVFASCSVDGN 304 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~-h--------~~~V~~l~~sp~~~~~l~s~s~dg~ 304 (479)
..+.+|.+.|...+.|..+...+.|...+ ..+..|......... + ...+.+|.++|.....+..+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 46789999986544666665555554432 223344322111110 0 135899999997544666666544
Q ss_pred EEEEEcCCCCceeeEEec--CC---CCEEEEEEcCCCCcEEEEEeC-----------CCeEEEEeCCCCCCCCceEEE-e
Q 039302 305 IAIWDTRVGKSALMSFKA--HN---ADVNVISWNRLASCLLASGSD-----------DGTFSIHDLRLLKGGDSVVAH-F 367 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~~~--h~---~~v~~l~~~p~~~~~l~sgs~-----------dg~i~iwDlr~~~~~~~~~~~-~ 367 (479)
|...+-. +. .-..+.. .. ..+.++.++|..+..|.++.. ++...||...........+.. +
T Consensus 255 l~~s~D~-G~-tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~gl 332 (394)
T 3b7f_A 255 IYRMDRR-EG-VWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGL 332 (394)
T ss_dssp EEEEETT-TT-EEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTS
T ss_pred EEEeCCC-CC-cceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCC
Confidence 4443322 21 1111111 11 345778888754344444432 333456655443221112110 1
Q ss_pred ecCCC----CeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 368 EYHKH----PVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 368 ~~h~~----~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
..... -...++++|.++..|+.++.++.|..
T Consensus 333 p~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 333 PTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp CCSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CCccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 10000 11358888866555666766665543
No 339
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=87.37 E-value=31 Score=36.08 Aligned_cols=228 Identities=13% Similarity=0.056 Sum_probs=123.5
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCe
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGR 248 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~ 248 (479)
...|++|.-..+|- +-.|+.+| +..||-..... .. ... ......|.++.-..++ .
T Consensus 21 ~n~V~~I~qD~~G~--lWigT~~G-L~ryDG~~~~~-~~--------------~~~-----~~~~~~i~~i~~d~~g--~ 75 (758)
T 3ott_A 21 ASVVSCFLQDSEGL--IWIGSNKG-LFSYDGYSTQQ-HF--------------TYG-----ENNNTRIYCGVIIDNT--Y 75 (758)
T ss_dssp CCCEEEEEECTTSC--EEEEESSC-EEEECSSCEEE-CS--------------CTT-----STTSSCEEEEEEETTT--E
T ss_pred cceEEEEEECCCCC--EEEEECCC-ccccCCCceEE-EE--------------ccC-----CCCCceEEEEEEcCCC--c
Confidence 35688888888773 33445666 66677432100 00 000 0123467887765544 6
Q ss_pred EEEEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEe-----cC
Q 039302 249 LVSGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFK-----AH 323 (479)
Q Consensus 249 l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~-----~h 323 (479)
|..|+.+| +..||..+... .. ........|.++... ++ .+-.++.+ -|..+|..+.+ ...+. ..
T Consensus 76 lWigT~~G-l~~yd~~~~~f-~~---~~~~~~~~i~~i~~~-~g--~lWigt~~-Gl~~~~~~~~~--~~~~~~~~~~l~ 144 (758)
T 3ott_A 76 LYMGTDNG-ILVYNYRADRY-EQ---PETDFPTDVRTMALQ-GD--TLWLGALN-GLYTYQLQSRK--LTSFDTRRNGLP 144 (758)
T ss_dssp EEEEETTE-EEEEETTTTEE-CC---CSCCCCSCEEEEEEE-TT--EEEEEETT-EEEEEETTTCC--EEEECHHHHCCS
T ss_pred EEEEeCCC-eEEEeCCCCEE-EC---cccCCCceEEEEEec-CC--cEEEEcCC-cceeEeCCCCe--EEEeccCCCCcC
Confidence 77777654 78899866321 11 111123357777643 44 35555555 57888987653 22231 12
Q ss_pred CCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecC------CCCeEEEEEeCCCCCEEEEEeCCCcEE
Q 039302 324 NADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYH------KHPVTSIEWSPHEGSTLAVSSADNQLT 397 (479)
Q Consensus 324 ~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h------~~~I~~v~~sp~~~~~las~s~Dg~I~ 397 (479)
...|.++....++ .+.+ |+.. -|..+|..+.. ...+... ...|.++...+.+ ..|-.|+. +-|.
T Consensus 145 ~~~i~~i~~d~~g-~lWi-gt~~-Gl~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~i~~d~~~-~~lWigt~-~Gl~ 214 (758)
T 3ott_A 145 NNTIYSIIRTKDN-QIYV-GTYN-GLCRYIPSNGK-----FEGIPLPVHSSQSNLFVNSLLEDTTR-QCVWIGTE-GYLF 214 (758)
T ss_dssp CSCEEEEEECTTC-CEEE-EETT-EEEEEETTTTE-----EEEECCCCCTTCSSCCEEEEEEETTT-TEEEEEEE-EEEE
T ss_pred CCeEEEEEEcCCC-CEEE-EeCC-CHhhCccCCCc-----eEEecCCCccccccceeEEEEEECCC-CEEEEEEC-CCCe
Confidence 3468888888777 4444 4544 57788876543 2222111 2248888887744 43334443 4577
Q ss_pred EEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEeecCCCCeeeEEEeCCCCcEEEEEcCCCceEEeee
Q 039302 398 IWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIHQGQKDLKELHWHTQVPGMIVSTAADGFNILMPS 468 (479)
Q Consensus 398 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h~g~~~V~~v~w~p~~~~ll~s~~~dgi~iw~~~ 468 (479)
.++...... ..+. ......|.++.-..++. +.+++ .+|+.+++..
T Consensus 215 ~~~~~~~~~-----------------------~~~~-~l~~~~i~~i~~d~~g~-lWigT-~~Gl~~~~~~ 259 (758)
T 3ott_A 215 QYFPSTGQI-----------------------KQTE-AFHNNSIKSLALDGNGD-LLAGT-DNGLYVYHND 259 (758)
T ss_dssp EEETTTTEE-----------------------EEEE-EEEEEEEEEEEECTTCC-EEEEE-TTEEEEECCT
T ss_pred EEcCCCCeE-----------------------Eecc-CCCCCeEEEEEEcCCCC-EEEEe-CCceeEEecC
Confidence 888765420 0000 01113488888887775 54444 5677777653
No 340
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=87.04 E-value=21 Score=37.10 Aligned_cols=155 Identities=10% Similarity=0.058 Sum_probs=79.6
Q ss_pred CCCCeEEEEeCC------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCC--cEEEEEcCCCCc
Q 039302 244 VAPGRLVSGDCN------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDG--NIAIWDTRVGKS 315 (479)
Q Consensus 244 ~~~~~l~sg~~d------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg--~I~iwD~~~~~~ 315 (479)
++. .++.|+.+ ..+.+||+.+ ..|.... .+......... +...++. +++.|+.++ .+.+||+.+..-
T Consensus 451 ~~~-lyv~GG~~~~~~~~~dv~~yd~~t-~~W~~~~-~~p~~R~~h~~-~~~~~~~-iyv~GG~~~~~~v~~yd~~t~~W 525 (695)
T 2zwa_A 451 NNQ-LLLIGGRKAPHQGLSDNWIFDMKT-REWSMIK-SLSHTRFRHSA-CSLPDGN-VLILGGVTEGPAMLLYNVTEEIF 525 (695)
T ss_dssp TTE-EEEECCBSSTTCBCCCCEEEETTT-TEEEECC-CCSBCCBSCEE-EECTTSC-EEEECCBCSSCSEEEEETTTTEE
T ss_pred CCE-EEEEcCCCCCCCccccEEEEeCCC-CcEEECC-CCCCCcccceE-EEEcCCE-EEEECCCCCCCCEEEEECCCCce
Confidence 444 66666643 3578888876 3444321 11111111122 2223555 888887655 699999987631
Q ss_pred eeeE----EecCCCCEEEEEEcCCCCcEEEEEeC--C-----CeEEEEeCCCCCC----CCceEEEee-cCCCCeEEEEE
Q 039302 316 ALMS----FKAHNADVNVISWNRLASCLLASGSD--D-----GTFSIHDLRLLKG----GDSVVAHFE-YHKHPVTSIEW 379 (479)
Q Consensus 316 ~~~~----~~~h~~~v~~l~~~p~~~~~l~sgs~--d-----g~i~iwDlr~~~~----~~~~~~~~~-~h~~~I~~v~~ 379 (479)
.... .........++.++.....+++.||. + ..+.+||+.+..- .+..+.... ........+.+
T Consensus 526 ~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~ 605 (695)
T 2zwa_A 526 KDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI 605 (695)
T ss_dssp EECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE
T ss_pred EEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe
Confidence 1111 11111222345556553378888876 2 4588999887651 001122211 11122233333
Q ss_pred eCCCCCEEEEEeC--------CCcEEEEECCCCC
Q 039302 380 SPHEGSTLAVSSA--------DNQLTIWDLSLEK 405 (479)
Q Consensus 380 sp~~~~~las~s~--------Dg~I~iwdl~~~~ 405 (479)
. ++.+++.||. -..|.+||+.+..
T Consensus 606 ~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 606 T--PRKLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp E--TTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred C--CCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 3 1477787874 3468899987653
No 341
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.76 E-value=19 Score=33.01 Aligned_cols=141 Identities=6% Similarity=-0.044 Sum_probs=70.7
Q ss_pred EEEeCCCCCCeEEEEeCC--------------CeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEe--C
Q 039302 238 AIDWNPVAPGRLVSGDCN--------------SCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCS--V 301 (479)
Q Consensus 238 ~l~~s~~~~~~l~sg~~d--------------g~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s--~ 301 (479)
+--+++++. .|+-+... ..|+..++....... +. .... ..|++.+. .|+-.. .
T Consensus 57 ~~~i~~~g~-~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-----l~--~~~~--~~~s~~g~-~Iy~~~~~~ 125 (302)
T 3s25_A 57 AMYINADKN-YVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-----LD--PDPC--IYASLIGN-YIYYLHYDT 125 (302)
T ss_dssp EEEEEECSS-EEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-----EE--CSCE--EEEEEETT-EEEEEEESS
T ss_pred eeeEEEcCC-EEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-----ee--cCCc--cEEEEeCC-EEEEEeecC
Confidence 345567776 55554432 356666665543221 11 1122 25677787 454443 3
Q ss_pred --CCcEEEEEcCCCCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEE
Q 039302 302 --DGNIAIWDTRVGKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEW 379 (479)
Q Consensus 302 --dg~I~iwD~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~ 379 (479)
...|...++.... ...+..+.. ..|++.+..+..+......|.+-++.... ....+. +... ..+
T Consensus 126 ~~~~~Iy~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~----~~~l~~---~~~~-~~~ 191 (302)
T 3s25_A 126 QTATSLYRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS----EALFYD---CNCY-KPV 191 (302)
T ss_dssp SSCEEEEEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE----EEEEEC---SCEE-EEE
T ss_pred CCCceEEEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC----EEEEeC---CCcc-cee
Confidence 3445555555432 334443332 45677775555555446788888876554 222232 2332 345
Q ss_pred eCCCCCEEEEEeCCC-cEEEEECCC
Q 039302 380 SPHEGSTLAVSSADN-QLTIWDLSL 403 (479)
Q Consensus 380 sp~~~~~las~s~Dg-~I~iwdl~~ 403 (479)
+|.++.++.+...++ .|..-++..
T Consensus 192 ~P~g~~iy~t~~~~~~~I~~~~ldG 216 (302)
T 3s25_A 192 VLDDTNVYYMDVNRDNAIVHVNINN 216 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEECSSS
T ss_pred eecCCEEEEEEcCCCcEEEEEECCC
Confidence 687655544443333 444444443
No 342
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=86.59 E-value=17 Score=38.36 Aligned_cols=162 Identities=12% Similarity=0.068 Sum_probs=85.1
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCccc---CCCcEEEEEECCCCCcEEEEEeCCCc----E
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFIG---HAASVEDLQWSPTESDVFASCSVDGN----I 305 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~~---h~~~V~~l~~sp~~~~~l~s~s~dg~----I 305 (479)
...|.+|+++|..++.++.+...+.|...+ ..+..|......... ....|.+|+++|.....+..+..... -
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 358999999998777888888777765554 234455432211110 13479999999965444544442211 3
Q ss_pred EEEEcCCCCceeeEEec---------CCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee---cCCCC
Q 039302 306 AIWDTRVGKSALMSFKA---------HNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE---YHKHP 373 (479)
Q Consensus 306 ~iwD~~~~~~~~~~~~~---------h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~---~h~~~ 373 (479)
.||-.......-..+.. ....+..++++|..+..+..+...+.| |--......+..+..+. .....
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl--~~S~DgG~TW~~~~~~~~~~~~~~~ 170 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGI--WKSSDRAKTWTNVTSIPDAFTNGIG 170 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCE--EEESSTTSSCEEETTSCCCCSTTTC
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCE--EEECCCCcccCCCccCccccCCCCC
Confidence 44433333211111111 011356788888765666666644433 32222221121221111 11245
Q ss_pred eEEEEEeCCCCCEEEEEeCC-CcEE
Q 039302 374 VTSIEWSPHEGSTLAVSSAD-NQLT 397 (479)
Q Consensus 374 I~~v~~sp~~~~~las~s~D-g~I~ 397 (479)
+..|.++|.++..++++..+ +.|.
T Consensus 171 ~~~i~~~p~~~~~~~~~~~~~~~v~ 195 (789)
T 1sqj_A 171 YTSVIFDPERNGTIYASATAPQGMY 195 (789)
T ss_dssp EEEEEECTTSTTCEEEEESSTTCEE
T ss_pred eEEEEECCCCCCEEEEEEcCCCeEE
Confidence 88999999766566666554 4443
No 343
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=86.10 E-value=22 Score=34.87 Aligned_cols=112 Identities=9% Similarity=0.096 Sum_probs=62.9
Q ss_pred CceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc--cccCCC-Ccc-----cCCCcEEEEEECCC---CCcEEEEEeCC
Q 039302 234 DEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT--WNVDPN-PFI-----GHAASVEDLQWSPT---ESDVFASCSVD 302 (479)
Q Consensus 234 ~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~--~~~~~~-~~~-----~h~~~V~~l~~sp~---~~~~l~s~s~d 302 (479)
..-++|+|.|++.++|+++...|.|++++...... ...... .+. ........|+|+|+ +..++++-+.+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 35679999999865677788899999997542211 111011 111 11456889999996 23244443321
Q ss_pred ------------CcEEEEEcCCC---------CceeeEEe--cCCCCEEEEEEcCCCCcEEEEEeCC
Q 039302 303 ------------GNIAIWDTRVG---------KSALMSFK--AHNADVNVISWNRLASCLLASGSDD 346 (479)
Q Consensus 303 ------------g~I~iwD~~~~---------~~~~~~~~--~h~~~v~~l~~~p~~~~~l~sgs~d 346 (479)
..|.-|.+... ...+..+. ........|.|.|++ .++++.++.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG-~LYv~~Gd~ 159 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDG-FLYIILGDG 159 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTS-CEEEEECCT
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCC-cEEEEeCCC
Confidence 13444555421 11222222 222346899999999 666655543
No 344
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=84.69 E-value=8.6 Score=35.88 Aligned_cols=53 Identities=15% Similarity=0.122 Sum_probs=27.3
Q ss_pred eEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCC------cEEEEECCCCC
Q 039302 348 TFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADN------QLTIWDLSLEK 405 (479)
Q Consensus 348 ~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg------~I~iwdl~~~~ 405 (479)
.+.+||+.+.. +..+..+......-.++.+ ++.+++.||.++ .|.+++++..+
T Consensus 286 ~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 286 STDIHLWHNGK--WDKSGELSQGRAYGVSLPW---NNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp CCEEEECC-----CEEEEECSSCCBSSEEEEE---TTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred eEEEEecCCCc--eeeCCCCCCCcccceeEEe---CCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 57899998765 3344444332222233333 347888888653 35555777664
No 345
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=82.99 E-value=45 Score=34.57 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=57.5
Q ss_pred CCCCeEEEEeCCC--eEEEEecCCCCccccCCCC--cccCCCcEEEEEECCCCCcEEEEEeC--C-----CcEEEEEcCC
Q 039302 244 VAPGRLVSGDCNS--CIHLWEPASDATWNVDPNP--FIGHAASVEDLQWSPTESDVFASCSV--D-----GNIAIWDTRV 312 (479)
Q Consensus 244 ~~~~~l~sg~~dg--~I~lwd~~~~~~~~~~~~~--~~~h~~~V~~l~~sp~~~~~l~s~s~--d-----g~I~iwD~~~ 312 (479)
++. +++.|+.++ .+.+||+.+ ..|...... ..........+.+......+++.|+. + ..+.+||+.+
T Consensus 500 ~~~-iyv~GG~~~~~~v~~yd~~t-~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~ 577 (695)
T 2zwa_A 500 DGN-VLILGGVTEGPAMLLYNVTE-EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA 577 (695)
T ss_dssp TSC-EEEECCBCSSCSEEEEETTT-TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT
T ss_pred CCE-EEEECCCCCCCCEEEEECCC-CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC
Confidence 454 777777655 689999876 345432210 11111112234455552337777775 2 3588999987
Q ss_pred CCc--e--eeEEec----CCCCEEEEEEcCCCCcEEEEEeCC--------CeEEEEeCCCCC
Q 039302 313 GKS--A--LMSFKA----HNADVNVISWNRLASCLLASGSDD--------GTFSIHDLRLLK 358 (479)
Q Consensus 313 ~~~--~--~~~~~~----h~~~v~~l~~~p~~~~~l~sgs~d--------g~i~iwDlr~~~ 358 (479)
..- . ...+.. ......++.+. ++ .+++.||.+ ..|.+||+.+..
T Consensus 578 ~~w~~~~~W~~~~~~p~~~R~~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~v~~yd~~t~~ 637 (695)
T 2zwa_A 578 ENATEPITVIKKLQHPLFQRYGSQIKYIT-PR-KLLIVGGTSPSGLFDRTNSIISLDPLSET 637 (695)
T ss_dssp TCSSCCEEEEEEEECGGGCCBSCEEEEEE-TT-EEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred CccccceEEEEcCCCCCCCcccceEEEeC-CC-EEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence 651 0 111111 11122333333 24 677777743 457888887654
No 346
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=82.08 E-value=35 Score=32.26 Aligned_cols=160 Identities=11% Similarity=0.031 Sum_probs=77.1
Q ss_pred CCceEEEEeCCCCCCeEEEEeCCC----eEEEEecCCCCccccCCCC--ccc--------CCCcEEEEEECCCC-CcEEE
Q 039302 233 KDEGYAIDWNPVAPGRLVSGDCNS----CIHLWEPASDATWNVDPNP--FIG--------HAASVEDLQWSPTE-SDVFA 297 (479)
Q Consensus 233 ~~~v~~l~~s~~~~~~l~sg~~dg----~I~lwd~~~~~~~~~~~~~--~~~--------h~~~V~~l~~sp~~-~~~l~ 297 (479)
...|.+|++.|...+.|..+...| .|...+ ..+..|...... +.. ....|.+|++.|.+ ...+.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 347999999985444566666555 444332 233344322111 111 12358889998743 22455
Q ss_pred EEeCCCcEEEEEcCCCCceeeEEe-------------------cCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCC
Q 039302 298 SCSVDGNIAIWDTRVGKSALMSFK-------------------AHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLK 358 (479)
Q Consensus 298 s~s~dg~I~iwD~~~~~~~~~~~~-------------------~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~ 358 (479)
+++..+.|...+- .++ .-..+. .....+.+|.++|..+..|..+..++.|...+-. ++
T Consensus 133 ~g~~~ggl~~S~D-gG~-tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~ 209 (394)
T 3b7f_A 133 AGTSPQGLFRSTD-HGA-SWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GT 209 (394)
T ss_dssp EEEETTEEEEESS-TTS-BCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TS
T ss_pred EEecCCcEEEEcC-CCC-CeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CC
Confidence 5554555444322 121 111111 1123578999998543444445444444443221 11
Q ss_pred CCCceEEE-eec-C--------CCCeEEEEEeCCCCCEEEEEeCCCcEEE
Q 039302 359 GGDSVVAH-FEY-H--------KHPVTSIEWSPHEGSTLAVSSADNQLTI 398 (479)
Q Consensus 359 ~~~~~~~~-~~~-h--------~~~I~~v~~sp~~~~~las~s~Dg~I~i 398 (479)
. ...+.. ... + ...+.+|.++|.++..|..++..+ |..
T Consensus 210 t-W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~ 257 (394)
T 3b7f_A 210 D-WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYR 257 (394)
T ss_dssp S-CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEE
T ss_pred C-ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEE
Confidence 0 111100 000 0 124889999997656677666544 443
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=82.02 E-value=14 Score=34.46 Aligned_cols=58 Identities=12% Similarity=0.074 Sum_probs=33.7
Q ss_pred EEEEEeCCCcEEEEEcCCCCceeeEEecCC--CC-----EEEEEEc---C-CCCcEEEEEeCCCeEEEEe
Q 039302 295 VFASCSVDGNIAIWDTRVGKSALMSFKAHN--AD-----VNVISWN---R-LASCLLASGSDDGTFSIHD 353 (479)
Q Consensus 295 ~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~--~~-----v~~l~~~---p-~~~~~l~sgs~dg~i~iwD 353 (479)
.+++|+.+|.+.-.|+++++ .+..+.... .. ..|.... . ..+..|+.|..+..+.+.+
T Consensus 113 ~Vy~Gs~~g~l~ald~~tG~-~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~ 181 (339)
T 2be1_A 113 KVYTGSMRTIMYTINMLNGE-IISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS 181 (339)
T ss_dssp EEEECEEEEEEEEEETTTCC-EEEEESTTCBCC--------------------CCEEEEEEEEEECEECC
T ss_pred EEEEEecCCEEEEEECCCCc-EEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC
Confidence 78899999999999999996 455543211 10 1111111 0 1124677777777777766
No 348
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=80.58 E-value=61 Score=34.13 Aligned_cols=157 Identities=15% Similarity=0.216 Sum_probs=79.4
Q ss_pred CcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC----CCCceEEEEeCCC
Q 039302 169 QGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG----HKDEGYAIDWNPV 244 (479)
Q Consensus 169 ~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~s~~ 244 (479)
.+.|.+|.++|.++.++..++..|.|...+=.. . ..+++..... ....+.+|++.|.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG--~-----------------tW~~~~~~~~~~~~~~~~i~~ia~dp~ 74 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDAGT--S-----------------KWIPLNDFIEAQDMNIMGTESIALDPN 74 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEETTT--T-----------------EEEESCTTCCGGGGGGCSEEEEEEETT
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecCCC--C-----------------CeeECccCCCcccccCCceeEEEECCC
Confidence 468999999998766666667777665443211 0 0111110000 1246899999986
Q ss_pred CCCeEEEEeCCCe----EEEEecCC-CCccccCCCCcc--c---CCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC
Q 039302 245 APGRLVSGDCNSC----IHLWEPAS-DATWNVDPNPFI--G---HAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK 314 (479)
Q Consensus 245 ~~~~l~sg~~dg~----I~lwd~~~-~~~~~~~~~~~~--~---h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~ 314 (479)
.++.++.+..... -.||.... +..|......+. + ....+..|+++|.....+..+...+. ||-...+.
T Consensus 75 ~~~~i~~~~g~~~~~~~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~g--l~~S~DgG 152 (789)
T 1sqj_A 75 NPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEG--IWKSSDRA 152 (789)
T ss_dssp EEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSC--EEEESSTT
T ss_pred CCCEEEEEeCccCCCcccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCC--EEEECCCC
Confidence 5545555543211 33444333 334433211111 0 01135678888876556666653443 33333321
Q ss_pred ceeeEEe------cCCCCEEEEEEcCCCCcEEEEEeCC
Q 039302 315 SALMSFK------AHNADVNVISWNRLASCLLASGSDD 346 (479)
Q Consensus 315 ~~~~~~~------~h~~~v~~l~~~p~~~~~l~sgs~d 346 (479)
..-..+. .....+..|.++|..+..|.++..+
T Consensus 153 ~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 153 KTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp SSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred cccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 1111111 1124688999998665555555544
No 349
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=79.18 E-value=15 Score=34.12 Aligned_cols=19 Identities=5% Similarity=-0.039 Sum_probs=12.5
Q ss_pred cEEEEEeC-CceEEEEeCCC
Q 039302 183 HICASWAD-TGHVQVWDFRS 201 (479)
Q Consensus 183 ~~lat~s~-dg~V~iwd~~~ 201 (479)
.+++.|+. ...+.+||+..
T Consensus 21 ~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 21 TVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp EEEEECGGGTTCEEEEETTS
T ss_pred EEEEEeCcCCCeEEEEcccc
Confidence 66666654 34688888763
No 350
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=75.04 E-value=47 Score=29.86 Aligned_cols=184 Identities=15% Similarity=0.126 Sum_probs=101.4
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.|..|+.-.. +.++. . +|.|+.|-.+..... ..|.. ....|..++..... .++
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gql-----------------g~p~~----~~~~i~~ia~G~~h--s~~ 77 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQL-----------------TMPAA----TQSGVDAIAAGNYH--SLA 77 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTT-----------------SCCGG----GGSCCCEEEECSSE--EEE
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCC-----------------CCCcc----CCCCEEEEEeCCCE--EEE
Confidence 4666665443 34444 4 899999987653111 11110 11246666665443 333
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
. . ||.|+.|-.+.......+.. . ...|..|+..... .+.-. +|.|..|-.....+.- ........|..|
T Consensus 78 l-~-~G~v~~wG~n~~Gqlg~P~~-~---~~~v~~ia~G~~h---s~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i 146 (282)
T 3qhy_B 78 L-K-DGEVIAWGGNEDGQTTVPAE-A---RSGVDAIAAGAWA---SYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTAL 146 (282)
T ss_dssp E-E-TTEEEEEECCTTSTTCCCGG-G---SSSEEEEEEETTE---EEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEE
T ss_pred E-E-CCEEEEeeCCCCCCCCCCcc-c---CCCeEEEECcCCE---EEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEE
Confidence 3 4 89999998766444322111 1 2468888876443 33334 9999999776532211 111123457777
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+..... .++. . ||.|..|-.........+. .-...|..|+.... ..++. .||.|+.|-....
T Consensus 147 ~~G~~~--~~~l-~-~G~v~~wG~n~~gqlg~p~----~~~~~v~~i~~G~~--hs~al--~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 147 DGGVYT--ALAV-K-NGGVIAWGDNYFGQTTVPA----EAQSGVDDVAGGIF--HSLAL--KDGKVIAWGDNRY 208 (282)
T ss_dssp EECSSE--EEEE-E-TTEEEEEECCTTSTTSCCG----GGGSSEEEEEECSS--EEEEE--ETTEEEEEECCTT
T ss_pred EcccCE--EEEE-E-CCEEEEecCCCCCCCCCce----ecCCCeEEEEecCC--EEEEE--ECCeEEEEECCCC
Confidence 665533 3332 3 6999999776543211111 11356888877542 33444 5999999987654
No 351
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=72.03 E-value=98 Score=32.20 Aligned_cols=111 Identities=14% Similarity=0.064 Sum_probs=61.1
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcc-c--CCCcEEEEEECCCCCcEEEEEeCC-------Cc
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFI-G--HAASVEDLQWSPTESDVFASCSVD-------GN 304 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~-~--h~~~V~~l~~sp~~~~~l~s~s~d-------g~ 304 (479)
.|.+|+++|..++.+..+...|.|..++- .+..|........ . ....|.+|+++|...+.+..+... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 78999999998778888886676655542 3344443111110 0 124699999999654344443321 12
Q ss_pred EEEEEcCCCCceeeEEe-cC--------CCCEEEEEEcCCCCcEEEEEeCC
Q 039302 305 IAIWDTRVGKSALMSFK-AH--------NADVNVISWNRLASCLLASGSDD 346 (479)
Q Consensus 305 I~iwD~~~~~~~~~~~~-~h--------~~~v~~l~~~p~~~~~l~sgs~d 346 (479)
..||-...+...-..+. .. ...+..|+++|..+..|..+...
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 45555444322111111 11 01246789998876677777643
No 352
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=70.13 E-value=84 Score=30.64 Aligned_cols=30 Identities=7% Similarity=-0.032 Sum_probs=22.9
Q ss_pred cceeEEEEecCCC-cEEEEEeCCceEEEEeCC
Q 039302 170 GCVNRIRAMSQNP-HICASWADTGHVQVWDFR 200 (479)
Q Consensus 170 ~~V~~v~~~p~~~-~~lat~s~dg~V~iwd~~ 200 (479)
..-+.|+|.|++. .++++ ...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~-er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFIL-EKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEE-ETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEE-eCCceEEEEeCC
Confidence 3557889999984 47766 778999999754
No 353
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=63.70 E-value=14 Score=34.47 Aligned_cols=112 Identities=13% Similarity=0.218 Sum_probs=63.3
Q ss_pred eEEEEeCCCeEEEEecCCCCc-cccCCCCcccCCCcEEEEEE--CCCCCcEEEEE-eCCCcEEEEEcCCCCceeeEEec-
Q 039302 248 RLVSGDCNSCIHLWEPASDAT-WNVDPNPFIGHAASVEDLQW--SPTESDVFASC-SVDGNIAIWDTRVGKSALMSFKA- 322 (479)
Q Consensus 248 ~l~sg~~dg~I~lwd~~~~~~-~~~~~~~~~~h~~~V~~l~~--sp~~~~~l~s~-s~dg~I~iwD~~~~~~~~~~~~~- 322 (479)
+++.++.||.|+-.|..+++. |..... ...++....- .+.+...++.. +.||.|..++..++.. ...+..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~----~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~-~~~~~~~ 86 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPE----NFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQ-KLPLSIR 86 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGG----GSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEE-EEEEEHH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCC----ccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcE-Eeeeccc
Confidence 788899999999999877644 332111 1111111110 01222244443 5899999999887632 222211
Q ss_pred ---CCCCEEE---EEE-cC----CCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec
Q 039302 323 ---HNADVNV---ISW-NR----LASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 323 ---h~~~v~~---l~~-~p----~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
...++.. ... .+ .+ ..+.+|+.+|.+...|+++++ .+..+..
T Consensus 87 ~lv~~SP~~~~~~pvv~~~~~~~~~-g~Vy~Gs~~g~l~ald~~tG~----~~W~~~~ 139 (339)
T 2be1_A 87 QLVSTSPLHLKTNIVVNDSGKIVED-EKVYTGSMRTIMYTINMLNGE----IISAFGP 139 (339)
T ss_dssp HHHTTCSEEEECC----------CC-EEEEECEEEEEEEEEETTTCC----EEEEEST
T ss_pred cceeccccccCCCceeecccccccC-CEEEEEecCCEEEEEECCCCc----EEEEEec
Confidence 1122221 000 00 23 578899999999999999998 6777754
No 354
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=62.32 E-value=1.5e+02 Score=30.86 Aligned_cols=160 Identities=13% Similarity=0.047 Sum_probs=80.3
Q ss_pred CCCceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCccccCCCCcc----c----CCCcEEEEEECCCCCc-EEEEEeC-
Q 039302 232 HKDEGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDATWNVDPNPFI----G----HAASVEDLQWSPTESD-VFASCSV- 301 (479)
Q Consensus 232 h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~~~~~~~~~~----~----h~~~V~~l~~sp~~~~-~l~s~s~- 301 (479)
-.+.|.+|+++|.++..+..+...|.|.... ..+..|........ + ....|.+|+++|.... +++.++.
T Consensus 19 ~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~-DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~ia~dp~~~~~~~~~~g~~ 97 (763)
T 3a0f_A 19 GGGFISGLVAHPTEKDLIYARTDIGGTYRWN-AAKWEWEPITDFIINNALAGNGANLLGTESIALDPHNPDRLYLAQGDY 97 (763)
T ss_dssp BCSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCBTTCSSSCCCCCCSEEEEECCTTCTTCEEEEECSC
T ss_pred CCCceeEEEeCCCCCCEEEEEeccCcEEEEC-CCCCCeeECccCccccccCCCcccccceeEEEECCCCCCEEEEEeccc
Confidence 3458999999999877787777667654433 23344443222110 1 2346999999995433 4443331
Q ss_pred ---CCcEEEEEcCCCCceeeEEec-C------CC--CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeec
Q 039302 302 ---DGNIAIWDTRVGKSALMSFKA-H------NA--DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEY 369 (479)
Q Consensus 302 ---dg~I~iwD~~~~~~~~~~~~~-h------~~--~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~ 369 (479)
.....||-...+...-..+.. . .. ....|+++|..+..+.+++..+.| |--.........+..+..
T Consensus 98 ~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~l--~~S~DgG~TW~~~~~~~~ 175 (763)
T 3a0f_A 98 VQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGL--WRSTDRAQTWSRMNQLPD 175 (763)
T ss_dssp TTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSCE--EEESSTTSSCEECTTSCC
T ss_pred ccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCcE--EEECCCCcCccccccCcc
Confidence 112344443332111111110 0 11 114688888755556556654433 322222111111111111
Q ss_pred ---CCCCeEEEEEeCCCCCEEEEEeCCC
Q 039302 370 ---HKHPVTSIEWSPHEGSTLAVSSADN 394 (479)
Q Consensus 370 ---h~~~I~~v~~sp~~~~~las~s~Dg 394 (479)
....+..|.++|.++..++.+..++
T Consensus 176 ~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 176 SSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp CSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred cCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 1235788999987666566666655
No 355
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Probab=62.28 E-value=1.5e+02 Score=30.85 Aligned_cols=170 Identities=12% Similarity=0.097 Sum_probs=81.9
Q ss_pred EEEecCCcceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC---CCCceEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG---HKDEGYAI 239 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l 239 (479)
.+.++-.+.|.+|.+.|.++.++..+...|.|.... ........... ......+.. ....+.+|
T Consensus 14 ~~~~g~~g~i~~i~~~p~~~~~~y~~~~~ggv~~S~--DgG~tW~~~~~-----------~~~~~~~~~~~~~~~~~~~i 80 (763)
T 3a0f_A 14 PVTISGGGFISGLVAHPTEKDLIYARTDIGGTYRWN--AAKWEWEPITD-----------FIINNALAGNGANLLGTESI 80 (763)
T ss_dssp ECSCCBCSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCT-----------TCBTTCSSSCCCCCCSEEEE
T ss_pred eeEecCCCceeEEEeCCCCCCEEEEEeccCcEEEEC--CCCCCeeECcc-----------CccccccCCCcccccceeEE
Confidence 345566789999999999877777767666554333 21111100000 000000000 12358899
Q ss_pred EeCCCCCCeEEEEeCC-----CeEEEEecCC-CCccccCCCCccc--C-CC--cEEEEEECCCCCcEEEEEeCCCcEEEE
Q 039302 240 DWNPVAPGRLVSGDCN-----SCIHLWEPAS-DATWNVDPNPFIG--H-AA--SVEDLQWSPTESDVFASCSVDGNIAIW 308 (479)
Q Consensus 240 ~~s~~~~~~l~sg~~d-----g~I~lwd~~~-~~~~~~~~~~~~~--h-~~--~V~~l~~sp~~~~~l~s~s~dg~I~iw 308 (479)
++.|..++.++.+... ....||.... +..|......+.. . .+ ....|+++|.....+..+...+. ||
T Consensus 81 a~dp~~~~~~~~~~g~~~~~~~~~~i~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~v~p~~~~~v~a~~~~~~--l~ 158 (763)
T 3a0f_A 81 ALDPHNPDRLYLAQGDYVQWDPWAAFLVSDDRGKTFKQYRSPVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQG--LW 158 (763)
T ss_dssp ECCTTCTTCEEEEECSCTTTCSCCEEEEESSTTSSCEEEECSSCCCTTSTTTTSBCCEEECTTSTTCEEEECSSSC--EE
T ss_pred EECCCCCCEEEEEecccccCCCCceEEEECCCCCCceeccCCcccCccccCccccceEEECCCCCCEEEEEeCCCc--EE
Confidence 9998655555554321 1234444433 4445432211110 0 11 12468888875445555554443 33
Q ss_pred EcCCCCceeeEEe------cCCCCEEEEEEcCCCCcEEEEEeCCC
Q 039302 309 DTRVGKSALMSFK------AHNADVNVISWNRLASCLLASGSDDG 347 (479)
Q Consensus 309 D~~~~~~~~~~~~------~h~~~v~~l~~~p~~~~~l~sgs~dg 347 (479)
-...+...-..+. .....+..|.++|..+..++.+..++
T Consensus 159 ~S~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~~ 203 (763)
T 3a0f_A 159 RSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAV 203 (763)
T ss_dssp EESSTTSSCEECTTSCCCSCTTTCEEEEEECSSSTTCEEEEESST
T ss_pred EECCCCcCccccccCcccCCCccceEEEEECCCCCCEEEEEEeCC
Confidence 3332211111111 11235788999987655555555554
No 356
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=60.34 E-value=31 Score=34.69 Aligned_cols=97 Identities=13% Similarity=0.149 Sum_probs=64.7
Q ss_pred cEEEEEcCC----CCceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCC---------CCceEEEeecC
Q 039302 304 NIAIWDTRV----GKSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFSIHDLRLLKG---------GDSVVAHFEYH 370 (479)
Q Consensus 304 ~I~iwD~~~----~~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~---------~~~~~~~~~~h 370 (479)
.|.+.|.+. .. .+..+..-......+..+|+|..++++|--+.++.++|++.... ....+.... -
T Consensus 299 gv~ViD~~~~~~~~~-~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~ 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDS-KFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-L 376 (638)
T ss_dssp CCCEEECSCBTTBCC-SSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-C
T ss_pred CeeEEccccccccCC-ceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-C
Confidence 477888876 32 23333333344567889999977777888889999999985311 011122333 3
Q ss_pred CCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCC
Q 039302 371 KHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSL 403 (479)
Q Consensus 371 ~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~ 403 (479)
.......+|.+.+ +...|.--|.+|.-|++..
T Consensus 377 GlGPlHt~Fd~~G-~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 377 GLGPLHTTFDGRG-NAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp CSCEEEEEECSSS-EEEEEETTTTEEEEEEHHH
T ss_pred CCcccEEEECCCC-ceEeeeeecceEEEEeccH
Confidence 4456788999965 6667777899999999964
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=59.73 E-value=97 Score=27.71 Aligned_cols=184 Identities=19% Similarity=0.179 Sum_probs=100.5
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEE
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLV 250 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~ 250 (479)
.|..|+.-.. +.++. . +|.|+.|-.+..... ..|... ...|..++..... .+
T Consensus 64 ~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gql-----------------g~P~~~----~~~v~~ia~G~~h---s~ 115 (282)
T 3qhy_B 64 GVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQT-----------------TVPAEA----RSGVDAIAAGAWA---SY 115 (282)
T ss_dssp CCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTT-----------------CCCGGG----SSSEEEEEEETTE---EE
T ss_pred CEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCC-----------------CCCccc----CCCeEEEECcCCE---EE
Confidence 4666665543 34444 4 899999987652111 111110 2356777765543 23
Q ss_pred EEeCCCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCCceeeEEecCCCCEEEE
Q 039302 251 SGDCNSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGKSALMSFKAHNADVNVI 330 (479)
Q Consensus 251 sg~~dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~~~~~~~~~h~~~v~~l 330 (479)
.-. +|.|+.|-.+....... +. .....|..|+.-.... ++ -. ||.|..|-.......- .-..-...|..|
T Consensus 116 al~-~G~v~~wG~n~~gqlg~---~~-~~~~~i~~i~~G~~~~--~~-l~-~G~v~~wG~n~~gqlg-~p~~~~~~v~~i 185 (282)
T 3qhy_B 116 ALK-DGKVIAWGDDSDGQTTV---PA-EAQSGVTALDGGVYTA--LA-VK-NGGVIAWGDNYFGQTT-VPAEAQSGVDDV 185 (282)
T ss_dssp EEE-TTEEEEEECCTTSTTSC---CG-GGGSSEEEEEECSSEE--EE-EE-TTEEEEEECCTTSTTS-CCGGGGSSEEEE
T ss_pred EEe-CCeEEEecCCCCCcCCC---Cc-cCCCCeEEEEcccCEE--EE-EE-CCEEEEecCCCCCCCC-CceecCCCeEEE
Confidence 334 89999998765443221 11 1234577777654432 33 33 7999999776532211 111113457777
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEECCCC
Q 039302 331 SWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWDLSLE 404 (479)
Q Consensus 331 ~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwdl~~~ 404 (479)
+-.... .++. .+|.|+.|=.........+. . -...|..|+-... ..++.. ||.|..|=....
T Consensus 186 ~~G~~h--s~al--~~G~v~~wG~n~~gqlg~p~---~-~~~~v~~i~~G~~--h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 186 AGGIFH--SLAL--KDGKVIAWGDNRYKQTTVPT---E-ALSGVSAIASGEW--YSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp EECSSE--EEEE--ETTEEEEEECCTTSTTCCCG---G-GGSSCCEEEECSS--CEEEEE--TTEEEEESTTCC
T ss_pred EecCCE--EEEE--ECCeEEEEECCCCCCCCCCc---c-cCCCceEEEcCCC--EEEEEE--CCEEEEecCCCC
Confidence 765533 4444 48999999765543211111 1 1235777776542 334433 999999976654
No 358
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=51.75 E-value=2.2e+02 Score=29.44 Aligned_cols=112 Identities=18% Similarity=0.202 Sum_probs=59.4
Q ss_pred ceeEEEEecCCCcEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecC----CCCceEEEEeCCCCC
Q 039302 171 CVNRIRAMSQNPHICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGG----HKDEGYAIDWNPVAP 246 (479)
Q Consensus 171 ~V~~v~~~p~~~~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~s~~~~ 246 (479)
.|..|.++|.++.++..+...|.|..++-.. .. .+++....+ ....|.+|++.|..+
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G--~t-----------------W~~i~~~~~~~~~~~~~i~~i~~dp~~~ 84 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPST--ET-----------------WIPLLDHFQMDEYSYYGVESIATDPVDP 84 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETTT--TE-----------------EEECCTTCCGGGGGGGCEEEEEECSSST
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCCC--CC-----------------EEECcCccCcccccCCCcceEEeCCCCC
Confidence 8999999998766666667666655554221 10 111100000 113588999999765
Q ss_pred CeEEEEeCC-------CeEEEEecCC-CCccccCCCCcc--cC---CCcEEEEEECCCCCcEEEEEeC
Q 039302 247 GRLVSGDCN-------SCIHLWEPAS-DATWNVDPNPFI--GH---AASVEDLQWSPTESDVFASCSV 301 (479)
Q Consensus 247 ~~l~sg~~d-------g~I~lwd~~~-~~~~~~~~~~~~--~h---~~~V~~l~~sp~~~~~l~s~s~ 301 (479)
+.++.+... +...||.... +..|......+. ++ ...+..|+++|.....+..+..
T Consensus 85 ~~v~v~~~~~~~~~~~~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~ 152 (737)
T 2cn3_A 85 NRVYIVAGMYTNDWLPNMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTR 152 (737)
T ss_dssp TCEEEEECSCSSSSSCCCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECS
T ss_pred CEEEEEecccccccccCCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeec
Confidence 555555421 1245565544 334443222111 00 1134679999987656666653
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.23 E-value=1.8e+02 Score=31.26 Aligned_cols=33 Identities=6% Similarity=-0.023 Sum_probs=27.4
Q ss_pred ceEEEEeCCCCCCeEEEEeCCCeEEEEecCCCCc
Q 039302 235 EGYAIDWNPVAPGRLVSGDCNSCIHLWEPASDAT 268 (479)
Q Consensus 235 ~v~~l~~s~~~~~~l~sg~~dg~I~lwd~~~~~~ 268 (479)
.+.+++..++.. ++++-+.|+++++|++.+++.
T Consensus 237 ~~~~~~~~~~~~-~lftl~~D~~LRiWsl~t~~~ 269 (950)
T 4gq2_M 237 TIISMIFLSTYN-VLVMLSLDYKLKVLDLSTNQC 269 (950)
T ss_dssp CEEEEEEETTTT-EEEEEETTCEEEEEETTTTEE
T ss_pred eEEEEeecCCCc-EEEEEECCCEEEEEECCCCCe
Confidence 567777777776 999999999999999988643
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=50.18 E-value=65 Score=34.78 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=30.1
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEe
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHF 367 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~ 367 (479)
.+.++...++. .++++-+.|+++|||++.+++ ++.+.
T Consensus 237 ~~~~~~~~~~~-~~lftl~~D~~LRiWsl~t~~----~v~t~ 273 (950)
T 4gq2_M 237 TIISMIFLSTY-NVLVMLSLDYKLKVLDLSTNQ----CVETI 273 (950)
T ss_dssp CEEEEEEETTT-TEEEEEETTCEEEEEETTTTE----EEEEE
T ss_pred eEEEEeecCCC-cEEEEEECCCEEEEEECCCCC----eEeee
Confidence 46677777766 789999999999999999987 56654
No 361
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=50.16 E-value=44 Score=33.59 Aligned_cols=74 Identities=4% Similarity=-0.079 Sum_probs=54.1
Q ss_pred cEEEEEECCCCCcEEEEEeCCCcEEEEEcCCC-----------CceeeEEecCCCCEEEEEEcCCCCcEEEEEeCCCeEE
Q 039302 282 SVEDLQWSPTESDVFASCSVDGNIAIWDTRVG-----------KSALMSFKAHNADVNVISWNRLASCLLASGSDDGTFS 350 (479)
Q Consensus 282 ~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~-----------~~~~~~~~~h~~~v~~l~~~p~~~~~l~sgs~dg~i~ 350 (479)
+...+..+|+|+.++++|-.+.++.++|++.. +..+.....-.......+|.++| +...|---|..|.
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlfidSqvv 402 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLFIDSQVV 402 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEETTTTEEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCC-ceEeeeeecceEE
Confidence 34567899999977777778999999999842 11111111234456778999998 7777888999999
Q ss_pred EEeCCC
Q 039302 351 IHDLRL 356 (479)
Q Consensus 351 iwDlr~ 356 (479)
-|++..
T Consensus 403 kWni~~ 408 (638)
T 3sbq_A 403 KWNMEE 408 (638)
T ss_dssp EEEHHH
T ss_pred EEeccH
Confidence 999864
No 362
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=36.94 E-value=2.5e+02 Score=25.73 Aligned_cols=155 Identities=9% Similarity=-0.049 Sum_probs=84.5
Q ss_pred cEEEEEeCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeCCCeEEEEe
Q 039302 183 HICASWADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDCNSCIHLWE 262 (479)
Q Consensus 183 ~~lat~s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~dg~I~lwd 262 (479)
..+++.+..|.|+.-.+......-. .+.....+.. .+.+..+....... .|+..+..|.+..+.
T Consensus 110 ~~~v~~T~~G~iKr~~l~~~~~~~r--------------~G~~~i~lke-~D~lv~~~~~~~~d-~ill~T~~G~~~rf~ 173 (327)
T 3uc1_A 110 PYLVLATRNGLVKKSKLTDFDSNRS--------------GGIVAVNLRD-NDELVGAVLCSAGD-DLLLVSANGQSIRFS 173 (327)
T ss_dssp SEEEEEETTSEEEEEEGGGGCCCCS--------------SCEESCBCCT-TCCEEEEEEECTTC-EEEEEETTSEEEEEE
T ss_pred CEEEEEcCCCEEEEeEHHHhhcccc--------------CceEEEEECC-CCEEEEEEEecCCC-EEEEEECCCeEEEEE
Confidence 5777889999999988765321100 0111222333 34455554444444 788888899988887
Q ss_pred cC--CCC---c--cccCCCCcccCCCcEEEEEECCCCCcEEEEEeCCCcEEEEEcCCCC------ceee--EEecCCCCE
Q 039302 263 PA--SDA---T--WNVDPNPFIGHAASVEDLQWSPTESDVFASCSVDGNIAIWDTRVGK------SALM--SFKAHNADV 327 (479)
Q Consensus 263 ~~--~~~---~--~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~dg~I~iwD~~~~~------~~~~--~~~~h~~~v 327 (479)
.. .-. . ..+....+. ....|.++...+.+. .++..+..|.++.-.+..-. .-+. .+..-...+
T Consensus 174 ~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~-~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~l 251 (327)
T 3uc1_A 174 ATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGT-YLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRL 251 (327)
T ss_dssp CCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTC-EEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSE
T ss_pred CcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCC-EEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeE
Confidence 76 211 1 001111122 245577766665555 78888999999888754321 1111 122212334
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEeCCC
Q 039302 328 NVISWNRLASCLLASGSDDGTFSIHDLRL 356 (479)
Q Consensus 328 ~~l~~~p~~~~~l~sgs~dg~i~iwDlr~ 356 (479)
-.+...... ..++..+.+|.+.-+....
T Consensus 252 v~~~~~~~~-~~i~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 252 VGALIVDDD-SELYAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEEECTT-CEEEEEEGGGCEEEEEGGG
T ss_pred EEEEEeCCC-ccEEEEcCCCeEEEEehhh
Confidence 444433333 4556667778777776543
No 363
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=36.49 E-value=2.4e+02 Score=25.40 Aligned_cols=176 Identities=9% Similarity=-0.018 Sum_probs=83.6
Q ss_pred EEecCCCcEEEEE-eCCceEEEEeCCCCcccccccccccCCCCCccccCCCcEEecCCCCceEEEEeCCCCCCeEEEEeC
Q 039302 176 RAMSQNPHICASW-ADTGHVQVWDFRSHLNALAESETVAGHGAPQVLNQSPLVKFGGHKDEGYAIDWNPVAPGRLVSGDC 254 (479)
Q Consensus 176 ~~~p~~~~~lat~-s~dg~V~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~~l~sg~~ 254 (479)
.+++++..+..+- +.++.-.||.+... +.....+..+.. .+|++.+. .|.-.+.
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d--------------------Gs~~~~lt~~~~----~~~~~~g~-~iy~t~~ 164 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRID--------------------GEEKKKIKNHYL----FTCNTSDR-YFYYNNP 164 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETT--------------------SCCCEEEESSCC----CCSEEETT-EEEEECT
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECC--------------------CCCeEEEeCCCc----eEeeEECC-EEEEEeC
Confidence 6677775555553 23444455544431 222334444432 45667776 5554443
Q ss_pred -CCeEEEEecCCCCccccCCCCcccCCCcEEEEEECCCCCcEEEEEeCC-CcEEEEEcCCCCceeeEEecCCCCEEEEEE
Q 039302 255 -NSCIHLWEPASDATWNVDPNPFIGHAASVEDLQWSPTESDVFASCSVD-GNIAIWDTRVGKSALMSFKAHNADVNVISW 332 (479)
Q Consensus 255 -dg~I~lwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~l~s~s~d-g~I~iwD~~~~~~~~~~~~~h~~~v~~l~~ 332 (479)
...|..-++.......+ +. +... ..++|.+..++.+-..+ ..|..-++.... ...+. ...+ ..|
T Consensus 165 g~~~Iy~~~l~g~~~~~l----~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~--~~~Lt--~~~~--~~~ 230 (302)
T 3s25_A 165 KNGQLYRYDTASQSEALF----YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN--PVVLT--EANI--EHY 230 (302)
T ss_dssp TTCCEEEEETTTTEEEEE----EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC--CEECS--CSCE--EEE
T ss_pred CCceEEEEECCCCCEEEE----eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC--eEEEe--CCCc--ceE
Confidence 56787777755432211 11 2222 24568888444443333 345555565543 22232 2233 346
Q ss_pred cCCCCcEEEEEe--CCCeEEEEeCCCCCCCCceEEEeecCCCCeEEEEEeCCCCCEEEEEeCCCcEEEEE
Q 039302 333 NRLASCLLASGS--DDGTFSIHDLRLLKGGDSVVAHFEYHKHPVTSIEWSPHEGSTLAVSSADNQLTIWD 400 (479)
Q Consensus 333 ~p~~~~~l~sgs--~dg~i~iwDlr~~~~~~~~~~~~~~h~~~I~~v~~sp~~~~~las~s~Dg~I~iwd 400 (479)
+|.+ ..|.-+. ..+.|..-++.-.. ....... .+.. +++.+..+..+--..+.|..-.
T Consensus 231 ~~~g-~~Iy~~~~~~~~~i~~~~~DG~~----r~~l~~~---~~~~--i~i~~d~Iy~td~~~~~i~~~~ 290 (302)
T 3s25_A 231 NVYG-SLIFYQRGGDNPALCVVKNDGTG----FKELAKG---EFCN--INVTSQYVYFTDFVSNKEYCTS 290 (302)
T ss_dssp EEET-TEEEEEECSSSCEEEEEETTSCC----CEEEEES---CEEE--EEECSSEEEEEETTTCCEEEEE
T ss_pred EECC-CEEEEEECCCCcEEEEEECCCCc----cEEeeCC---ccce--EEEeCCEEEEEECCCCeEEEEE
Confidence 7777 4555442 23566666665433 1111221 2333 4444545555554455544433
No 364
>2loj_A Putative cytoplasmic protein; pathogenic bacterial protein, PSI-biology, northeast structu genomics consortium (NESG); NMR {Salmonella enterica subsp}
Probab=22.73 E-value=93 Score=20.79 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=20.6
Q ss_pred EEEecCCcceeEEEEecCCCcEEEE
Q 039302 163 LRKVAHQGCVNRIRAMSQNPHICAS 187 (479)
Q Consensus 163 ~~~~~H~~~V~~v~~~p~~~~~lat 187 (479)
...+.|.|.++.++....| ++|.|
T Consensus 39 ~v~I~H~G~~Y~LR~Tr~G-KLILT 62 (63)
T 2loj_A 39 KVIIDHNGQEYLLRKTQAG-KLLLT 62 (63)
T ss_dssp EEEEEETTEEEEEEEETTT-EEEEE
T ss_pred EEEEEeCCeEEEeEEccCC-ceeec
Confidence 4678999999999999999 77765
No 365
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=21.89 E-value=1.3e+02 Score=31.12 Aligned_cols=36 Identities=11% Similarity=0.245 Sum_probs=27.5
Q ss_pred CEEEEEEcCCCCcEEEEEeCCCeEEEEeCCCCCCCCceEEEee
Q 039302 326 DVNVISWNRLASCLLASGSDDGTFSIHDLRLLKGGDSVVAHFE 368 (479)
Q Consensus 326 ~v~~l~~~p~~~~~l~sgs~dg~i~iwDlr~~~~~~~~~~~~~ 368 (479)
.|.++.+. . .+|++-+.|.++|+|++++++ ++.+..
T Consensus 223 ~Is~~~~~--~-~fLftL~~Dh~LRiWsL~t~~----lv~t~D 258 (729)
T 3f7f_A 223 VISCKLFH--E-RYLIVLTQNCHLKIWDLTSFT----LIQDYD 258 (729)
T ss_dssp EEEEEEET--T-TEEEEEETTCEEEEEETTTTE----EEEEEE
T ss_pred eEEEeccC--C-cEEEEEEcCCeEEEEEcCCCc----eEEeec
Confidence 35555554 3 799999999999999999987 555543
No 366
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=21.84 E-value=3.6e+02 Score=27.08 Aligned_cols=65 Identities=14% Similarity=0.155 Sum_probs=39.2
Q ss_pred CcEEEEEECCCCCcEEE-EEeC-----------CCcEEEEEcCCCCceeeEEec-CCCCEEEEEEcCCCCcEEEEEeCCC
Q 039302 281 ASVEDLQWSPTESDVFA-SCSV-----------DGNIAIWDTRVGKSALMSFKA-HNADVNVISWNRLASCLLASGSDDG 347 (479)
Q Consensus 281 ~~V~~l~~sp~~~~~l~-s~s~-----------dg~I~iwD~~~~~~~~~~~~~-h~~~v~~l~~~p~~~~~l~sgs~dg 347 (479)
.....|.|.++|. +.+ +=.. ...|..++..+++ ....+.. ....++.++|+|++..++++.-.=|
T Consensus 476 nsPDnL~fd~~G~-LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGe-l~~fl~~P~~aEpnGiafSPD~ktLfV~vQHPG 553 (592)
T 4a9v_A 476 NSPDGLGFDKAGR-LWILTDGDSSNAGDFAGMGNNQMLCADPATGE-IRRFMVGPIGCEVTGISFSPDQKTLFVGIQHPG 553 (592)
T ss_dssp CCEEEEEECTTCC-EEEEECCCCCCSGGGTTCCSCEEEEECTTTCC-EEEEEECCTTCEEEEEEECTTSSEEEEEEESTT
T ss_pred CCCCceEECCCCC-EEEEeCCCcCccccccccCCceEEEEeCCCCe-EEEEEeCCCCccccCCEECCCCCEEEEEEeCCC
Confidence 4678999999998 544 3211 1145556665554 2222332 2457899999999955555544333
No 367
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=21.68 E-value=6.7e+02 Score=25.76 Aligned_cols=205 Identities=9% Similarity=0.074 Sum_probs=102.6
Q ss_pred EEEE-eCCCCCCeEEEEeCCC----eEEEEecCCCCccccCCCCcc--cCCC-----cEEEEEECCCCCcEEEEE-----
Q 039302 237 YAID-WNPVAPGRLVSGDCNS----CIHLWEPASDATWNVDPNPFI--GHAA-----SVEDLQWSPTESDVFASC----- 299 (479)
Q Consensus 237 ~~l~-~s~~~~~~l~sg~~dg----~I~lwd~~~~~~~~~~~~~~~--~h~~-----~V~~l~~sp~~~~~l~s~----- 299 (479)
..+. ++|++...+++-|..| .|+++|+.++.... ..+. ...+ ....++|...+. ++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~---~~~~~~~k~~~~~~~~~~~~~W~d~~~-~~~~~~~~~~ 207 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVK---NGFEPITNSGKLLEGKFTYPTWINKDT-IIFNLVLHKN 207 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECT---TCSCCBCTTCCBCCEETCCEEEEETTE-EEECCCCSTT
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCC---CCcccccccccccccccceeeEECCCE-EEEEeCCCCC
Confidence 3444 7888873444444333 79999998754321 1122 1010 113347763433 44432
Q ss_pred -----eCCCcEEEEEcCCCCc-eeeEEecCCCCE-EEEEEcCCCCc----EEEEEeCC---CeEEEEeCCCCCCCCceEE
Q 039302 300 -----SVDGNIAIWDTRVGKS-ALMSFKAHNADV-NVISWNRLASC----LLASGSDD---GTFSIHDLRLLKGGDSVVA 365 (479)
Q Consensus 300 -----s~dg~I~iwD~~~~~~-~~~~~~~h~~~v-~~l~~~p~~~~----~l~sgs~d---g~i~iwDlr~~~~~~~~~~ 365 (479)
+.-..|+.|.+-+... -...+......+ .....++++.. ++++.+.+ ..+.+.|+..... .+.
T Consensus 208 ~~~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~ 284 (711)
T 4hvt_A 208 EITSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNL---KLQ 284 (711)
T ss_dssp CBCTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSC---EEE
T ss_pred CcCcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCC---cce
Confidence 1124688888876632 223344333333 23444555532 35544422 4566667654332 333
Q ss_pred EeecCCCCeEEEEEeCCCCCEEEEE----------eCCCcEEEEECCCCCChHHHHHHhhhcccccCCCCCCCCceEEee
Q 039302 366 HFEYHKHPVTSIEWSPHEGSTLAVS----------SADNQLTIWDLSLEKDEEEEAEFKAKTREQVNAPEDLPPQLLFIH 435 (479)
Q Consensus 366 ~~~~h~~~I~~v~~sp~~~~~las~----------s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~h 435 (479)
.+...... .+.+++ ++.+++.. ...+.|.+.++...... .......+.++.+
T Consensus 285 ~l~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---------------~~~~~~~~~~~~~ 346 (711)
T 4hvt_A 285 KINMPSDA--TLQGSF-KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKT---------------ESDKTSLKILFTP 346 (711)
T ss_dssp ECCSCTTC--EEEEEE-TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSC---------------GGGCTTCEEEECC
T ss_pred EeecCCcc--eEeeeE-CCEEEEEECcccccccccCCCCeEEEEECCccccc---------------ccccccceEEECC
Confidence 33322221 233444 33554432 23677888888754100 0000112445666
Q ss_pred cCCCCeeeEEEeCCCCcEEEEEcCCC---ceEEeee
Q 039302 436 QGQKDLKELHWHTQVPGMIVSTAADG---FNILMPS 468 (479)
Q Consensus 436 ~g~~~V~~v~w~p~~~~ll~s~~~dg---i~iw~~~ 468 (479)
.....+..+.|..+ .++++...++ |.++++.
T Consensus 347 ~~~~~l~~~~~~~~--~l~~~~~~~~~~~l~~~~~~ 380 (711)
T 4hvt_A 347 TANEVFNFISTTKD--RVFLATYDNVVAKVVTFTLE 380 (711)
T ss_dssp CTTEEEEEEEECSS--CEEEEEEETTEEEEEEECEE
T ss_pred CCCCeEEEEEEECC--EEEEEEEECCEEEEEEEECC
Confidence 65556889999876 5778777777 5566553
Done!