BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039303
(171 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 228 bits (581), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 106/155 (68%), Positives = 125/155 (80%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDASVLLDDTS+FTGEK+A N NSIRGFEVID++KS+VESLCPGVVSCADILAVAARD
Sbjct: 48 GCDASVLLDDTSNFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARD 107
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSG 120
SVVA GG SW V LGRRD N+++P+P +L+ LIS F+ KG + KE+V LSG
Sbjct: 108 SVVALGGASWNVLLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSG 167
Query: 121 AHTIGQARCLLFRQRIYNETNIDSEFATSLKSNCP 155
AHTIGQA+C FR RIYNE+NID +A SL++NCP
Sbjct: 168 AHTIGQAQCTAFRTRIYNESNIDPTYAKSLQANCP 202
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 162 bits (411), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 78/162 (48%), Positives = 110/162 (67%), Gaps = 7/162 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLDDT S EK+A NVNS RGF V+D++K+ +E+ CPGVVSC+D+LA+A+
Sbjct: 49 GCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEA 108
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSG 120
SV GGPSWTV LGRRD N++IPSP+ L+++ F+ GL+ ++VALSG
Sbjct: 109 SVSLAGGPSWTVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSG 168
Query: 121 AHTIGQARCLLFRQRIYN-------ETNIDSEFATSLKSNCP 155
AHT G+ARC +F R++N + ++S ++L+ CP
Sbjct: 169 AHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCP 210
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 106/162 (65%), Gaps = 11/162 (6%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD S EK A N+NS RGFEVID++K+ VE+ CPGVVSCADIL +AARD
Sbjct: 48 GCDASLLLDGADS---EKLAIPNINSARGFEVIDTIKAAVENACPGVVSCADILTLAARD 104
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSG 120
SVV GGP W V LGR+D N N+PSP L+ +I+ F L+ ++VALSG
Sbjct: 105 SVVLSGGPGWRVALGRKDGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNITDVVALSG 163
Query: 121 AHTIGQARCLLFRQRIYNET---NIDSEFATSLKSN----CP 155
AHT GQA+C +F R++N T N D+ TSL SN CP
Sbjct: 164 AHTFGQAKCAVFSNRLFNFTGAGNPDATLETSLLSNLQTVCP 205
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 154 bits (390), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 98/138 (71%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD++ S EK+A N NS RGF V+D++K+ +E+ CPGVVSC D+LA+A++
Sbjct: 50 GCDASILLDNSGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQA 109
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSG 120
SV GGPSWTV LGRRD N++IPSP L+++ S F+ GL+ ++VALSG
Sbjct: 110 SVSLSGGPSWTVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSG 169
Query: 121 AHTIGQARCLLFRQRIYN 138
AHT G+A C +F R++N
Sbjct: 170 AHTFGRATCGVFSNRLFN 187
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 148 bits (374), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 98/162 (60%), Gaps = 7/162 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDASVLLD T++ T EK A N S+RGFEVI + KS VE+ CP VSCADILA AARD
Sbjct: 48 GCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARD 107
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSG 120
S G ++ V GRRD N IPSPL + LI++FA K L+A EMV LSG
Sbjct: 108 SANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSG 167
Query: 121 AHTIGQARCLLFRQRIYN-------ETNIDSEFATSLKSNCP 155
AH+IG A C F R+YN + + +A L++ CP
Sbjct: 168 AHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCP 209
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P+P L L +F GL+ + ++VALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G HT G+ +C R+YN +N +++ + +L+ CP
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 211
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P+P L L +F GL+ + ++VALS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G HT G+ +C R+YN +N +++ + +L+ CP
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 210
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P+P L L +F GL+ + ++VALS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G HT G+ +C R+YN +N +++ + +L+ CP
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 210
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P+P L L +F GL+ + ++VALS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G HT G+ +C R+YN +N +++ + +L+ CP
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 210
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P+P L L +F GL+ + ++VALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G HT G+ +C R+YN +N +++ + +L+ CP
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 211
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P+P L L +F GL+ + ++VALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G HT G+ +C R+YN +N +++ + +L+ CP
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 211
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P+P L L +F GL+ + ++VALS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G HT G+ +C R+YN +N +++ + +L+ CP
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 210
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/162 (43%), Positives = 102/162 (62%), Gaps = 7/162 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCD SVLL++T + E+ A N+NSIRG +V++ +K+ VE+ CP VSCADILA+AA
Sbjct: 48 GCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEI 107
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSG 120
+ V GGP W V LGRRD N N+P+P +L L ++FA +GL+ ++V LSG
Sbjct: 108 ASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSG 167
Query: 121 AHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
HT G+ARC F R+YN +N +++ + L++ CP
Sbjct: 168 GHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARCP 209
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 147 bits (372), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 99/163 (60%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P P L L +F GL+ + ++VALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G HT G+ +C R+YN +N +++ + +L+ CP
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 211
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 147 bits (371), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 99/163 (60%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P P L L +F GL+ + ++VALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G HT G+ +C R+YN +N +++ + +L+ CP
Sbjct: 169 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 211
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 146 bits (369), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 75/163 (46%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 49 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 108
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P+P L L +F GL+ + ++VALS
Sbjct: 109 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 168
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G HT G+ +C R+YN +N +++ + +L+ CP
Sbjct: 169 GGHTFGKNQCRSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 211
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 146 bits (369), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 99/163 (60%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P+P L L +F GL+ + ++VAL
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALY 167
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G HT G+ +C R+YN +N +++ + +L+ CP
Sbjct: 168 GGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 210
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 146 bits (368), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 100/163 (61%), Gaps = 8/163 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARD 60
GCDAS+LLD+T+SF EK A N NS RGF VID +K+ VES CP VSCAD+L +AA+
Sbjct: 48 GCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQ 107
Query: 61 SVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLS-AKEMVALS 119
SV GGPSW V LGRRD N N+P+P L L +F GL+ + ++VALS
Sbjct: 108 SVTLAGGPSWRVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALS 167
Query: 120 GAHTIGQARCLLFRQRIYNETN-------IDSEFATSLKSNCP 155
G H+ G+ +C R+YN +N +++ + +L+ CP
Sbjct: 168 GGHSFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP 210
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 106 bits (265), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 66/161 (40%), Positives = 97/161 (60%), Gaps = 7/161 (4%)
Query: 1 GCDASVLLDDTSSFTGEKSASANVNSIR--GFEVIDSVKSEVESLCPG-VVSCADILAVA 57
GCDASVLLD +++ GE+ A N+ ++R F+ ++ ++ +E C G VVSC+DILA+A
Sbjct: 55 GCDASVLLDGSATGPGEQQAPPNL-TLRPSAFKAVNDIRDRLERECRGAVVSCSDILALA 113
Query: 58 ARDSVVAFGGPSWTVQLGRRDXXX-XXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMV 116
ARDSVV GGP + V LGRRD V +++P P ++ L++ + GL A ++V
Sbjct: 114 ARDSVVVSGGPDYRVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLV 173
Query: 117 ALSGAHTIGQARCLLFRQRIYNETN--IDSEFATSLKSNCP 155
+SG HTIG A C F R++ + I F + LK CP
Sbjct: 174 TISGGHTIGLAHCSSFEDRLFPRPDPTISPTFLSRLKRTCP 214
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 14 FTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQ 73
F E AN + ++ +K + V+ AD+ +A+ ++ GGP ++
Sbjct: 58 FDVELKHGANAGLVNALNLLKPIKDKYSG-----VTYADLFQLASATAIEEAGGPKIPMK 112
Query: 74 LGRRDXXXXXX-----XXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQAR 128
GR D + PSP L D+ F + GL+ KE+VALSGAHT+G++R
Sbjct: 113 YGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDV---FYRMGLNDKEIVALSGAHTLGRSR 169
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VALSGAHT+G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHL 182
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAHT+G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAHT+G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAHT+G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAHT+G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHL 182
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 4/83 (4%)
Query: 47 VVSCADILAVAARDSVVAFGGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFA 106
+VS AD +A +V GGP GR D +P + L F
Sbjct: 89 IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPP---EGRLPDATKGSDHLRDVFG 145
Query: 107 KK-GLSAKEMVALSGAHTIGQAR 128
K GLS +++VALSG HTIG A
Sbjct: 146 KAMGLSDQDIVALSGGHTIGAAH 168
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V + GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEWQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRAGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 63 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 117
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 118 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 175
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 69 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 123
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 124 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 181
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 69 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 123
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 124 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 181
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T E + SAN +++ +K+E ++S AD +A +V GGP
Sbjct: 70 TIKHPAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEV 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKK-GLSAKEMVALSGAHTIGQAR 128
GR D +P + L F K GL+ +++VALSG HTIG A
Sbjct: 125 PFHPGREDKPEPPP---EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 61/147 (41%), Gaps = 13/147 (8%)
Query: 17 EKSASANVNSIR--------GFEVIDSVKSEVESLCPGV--VSCADILAVAARDSVVAFG 66
+K S N S+R G + +D + +E+L +S AD+ +AA ++ G
Sbjct: 45 KKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMG 104
Query: 67 GPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQ 126
GP+ GR D + +P + + F + G + +E VAL GAHT G+
Sbjct: 105 GPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGE 164
Query: 127 ARCLL---FRQRIYNETNIDSEFATSL 150
+++ D+ F T L
Sbjct: 165 THIEFSGYHGPWTHDKNGFDNSFFTQL 191
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 17 EKSASANVNSIR--------GFEVIDSVKSEVESLCPGV--VSCADILAVAARDSVVAFG 66
+K S N S+R G + +D + +E+L +S AD+ +AA ++ G
Sbjct: 44 KKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMG 103
Query: 67 GPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQ 126
GP+ GR D + +P + + F + G + +E VAL GAHT G+
Sbjct: 104 GPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGE 163
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTHL 179
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 17 EKSASANVNSIR--------GFEVIDSVKSEVESLCPGV--VSCADILAVAARDSVVAFG 66
+K S N S+R G + +D + +E+L +S AD+ +AA ++ G
Sbjct: 45 KKDGSPNSASMRFKPECLYAGNKGLDIPRKALETLKKKYPQISYADLWVLAAYVAIEYMG 104
Query: 67 GPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQ 126
GP+ GR D + +P + + F + G + +E VAL GAHT G+
Sbjct: 105 GPTIPFCWGRVDAKDGSVCGPDGRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGE 164
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T E + SAN +++ +K+E ++S AD +A +V GGP
Sbjct: 70 TIKHPAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEV 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKK-GLSAKEMVALSGAHTIGQAR 128
GR D +P + L F K GL+ +++VALSG HTIG A
Sbjct: 125 PFHPGREDKPEPPP---EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 17 EKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGR 76
E + SAN +++ +K+E ++S AD +A +V GGP GR
Sbjct: 64 ELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGR 118
Query: 77 RDXXXXXXXXVNTNIPSPLMDLNDLISNFAKK-GLSAKEMVALSGAHTIGQAR 128
D +P + L F K GL+ +++VALSG HTIG A
Sbjct: 119 EDKPEPPP---EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 168
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRAGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T E + SAN +++ +K+E ++S AD +A +V GGP
Sbjct: 70 TIKHPAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEV 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKK-GLSAKEMVALSGAHTIGQAR 128
GR D +P + L F K GL+ +++VALSG HTIG A
Sbjct: 125 PFHPGREDKPEPPP---EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T E + SAN +++ +K+E ++S AD +A +V GGP
Sbjct: 58 TIKHPAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEV 112
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKK-GLSAKEMVALSGAHTIGQAR 128
GR D +P + L F K GL+ +++VALSG HTIG A
Sbjct: 113 PFHPGREDKPEPPP---EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 168
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T E + SAN +++ +K+E ++S AD +A +V GGP
Sbjct: 70 TIKHPAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEV 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKK-GLSAKEMVALSGAHTIGQAR 128
GR D +P + L F K GL+ +++VALSG HTIG A
Sbjct: 125 PFHPGREDKPEPPP---EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T E + SAN +++ +K+E ++S AD +A +V GGP
Sbjct: 70 TIKHPAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEV 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKK-GLSAKEMVALSGAHTIGQAR 128
GR D +P + L F K GL+ +++VALSG HTIG A
Sbjct: 125 PFHPGREDKPEPPP---EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPWNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T E + SAN +++ +K+E ++S AD +A +V GGP
Sbjct: 70 TIKHPAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEV 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKK-GLSAKEMVALSGAHTIGQAR 128
GR D +P + L F K GL+ +++VALSG HTIG A
Sbjct: 125 PFHPGREDKPEPPP---EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 50/119 (42%), Gaps = 9/119 (7%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T E + SAN +++ +K+E ++S AD +A +V GGP
Sbjct: 70 TIKHPAELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEV 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKK-GLSAKEMVALSGAHTIGQAR 128
GR D +P + L F K GL+ +++VALSG HTIG A
Sbjct: 125 PFHPGREDKPEPPP---EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 180
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 17 EKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGR 76
E + SAN +++ +K+E ++S AD +A +V GGP GR
Sbjct: 64 ELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGR 118
Query: 77 RDXXXXXXXXVNTNIPSPLMDLNDLISNFAKK-GLSAKEMVALSGAHTIGQAR 128
D +P + L F K GL+ +++VALSG HTIG A
Sbjct: 119 EDKPEPPP---EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 168
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 49/113 (43%), Gaps = 9/113 (7%)
Query: 17 EKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGR 76
E + SAN +++ +K+E ++S AD +A +V GGP GR
Sbjct: 64 ELAHSANNGLDIAVRLLEPLKAEFP-----ILSYADFYQLAGVVAVEVTGGPEVPFHPGR 118
Query: 77 RDXXXXXXXXVNTNIPSPLMDLNDLISNFAKK-GLSAKEMVALSGAHTIGQAR 128
D +P + L F K GL+ +++VALSG HTIG A
Sbjct: 119 EDKPEPPP---EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAH 168
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 68 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 122
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 123 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 180
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 127
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 128 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 127
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 128 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 72 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 126
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 127 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 184
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 127
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 128 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 73 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 127
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 128 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 185
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 179
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 68 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 122
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 123 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 180
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 37.4 bits (85), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 67 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 121
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 122 PWRCGRVDTPEDTTPD-NGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTEL 179
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 6/119 (5%)
Query: 11 TSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSW 70
T F E + +N GF+ ++ + E +S D+ ++ +V GP
Sbjct: 70 TYRFKKEFNDPSNAGLQNGFKFLEPIHKEFP-----WISSGDLFSLGGVTAVQEMQGPKI 124
Query: 71 TVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARC 129
+ GR D N +P D + + F + ++ +E+VAL GAH +G+
Sbjct: 125 PWRCGRVDTPEDTTPD-NGRLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|1UB2|A Chain A, Crystal Structure Of Catalase-Peroxidase From
Synechococcus Pcc 7942
Length = 720
Score = 30.8 bits (68), Expect = 0.42, Method: Composition-based stats.
Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 92 PSPLMDLNDLISNFAKKGLSAKEMVALS-GAHTIGQ 126
P PL +D+ FA+ ++ +E VAL+ G HT+G+
Sbjct: 231 PDPLKTAHDVRVTFARMAMNDEETVALTAGGHTVGK 266
>pdb|1X7U|A Chain A, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
pdb|1X7U|B Chain B, Crystal Structure Of The S324t Of Catalase-Peroxidase Katg
Length = 748
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 92 PSPLMDLNDLISNFAKKGLSAKEMVAL-SGAHTIGQ 126
P P+ D+ FA+ ++ +E VAL +G HT G+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|1MWV|A Chain A, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|1MWV|B Chain B, Crystal Structure Of Catalase-peroxidase Katg Of
Burkholderia Pseudomallei
pdb|2B2O|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2O|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph8.0
pdb|2B2Q|A Chain A, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2Q|B Chain B, Crystal Structure Of Native Catalase-Peroxidase Katg At
Ph7.5
pdb|2B2R|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2R|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph5.6
pdb|2B2S|A Chain A, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
pdb|2B2S|B Chain B, Crystal Structure Of An Oxoferryl Species Of Catalase-
Peroxidase Katg At Ph7.5
Length = 714
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 92 PSPLMDLNDLISNFAKKGLSAKEMVAL-SGAHTIGQ 126
P P+ D+ FA+ ++ +E VAL +G HT G+
Sbjct: 214 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 249
>pdb|3N3S|A Chain A, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
pdb|3N3S|B Chain B, Crystal Structure Of The E198a Variant Of Burkholderia
Pseudomallei Catalase-Peroxidase Katg With Inh
Length = 748
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 92 PSPLMDLNDLISNFAKKGLSAKEMVAL-SGAHTIGQ 126
P P+ D+ FA+ ++ +E VAL +G HT G+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|3N3Q|A Chain A, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
pdb|3N3Q|B Chain B, Crystal Structure Of The S324t Variant Of Burkholderia
Pseudomallei Katg With Isonicotinic Acid Hydrazide Bound
Length = 748
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 92 PSPLMDLNDLISNFAKKGLSAKEMVAL-SGAHTIGQ 126
P P+ D+ FA+ ++ +E VAL +G HT G+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|2FXJ|A Chain A, Crystal Structure Of Katg At Ph 8.5
pdb|2FXJ|B Chain B, Crystal Structure Of Katg At Ph 8.5
pdb|3N3O|A Chain A, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
pdb|3N3O|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Katg With
Nad Bound
Length = 748
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 92 PSPLMDLNDLISNFAKKGLSAKEMVAL-SGAHTIGQ 126
P P+ D+ FA+ ++ +E VAL +G HT G+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|2DV2|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
pdb|2DV2|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg At Ph 8.0
Length = 748
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 92 PSPLMDLNDLISNFAKKGLSAKEMVAL-SGAHTIGQ 126
P P+ D+ FA+ ++ +E VAL +G HT G+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|2DV1|A Chain A, Crystal Structure Of D141e Mutant Of Bpkatg
pdb|2DV1|B Chain B, Crystal Structure Of D141e Mutant Of Bpkatg
Length = 748
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 92 PSPLMDLNDLISNFAKKGLSAKEMVAL-SGAHTIGQ 126
P P+ D+ FA+ ++ +E VAL +G HT G+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|2FXG|A Chain A, Crystal Structure Of Katg At Ph 4.5
pdb|2FXG|B Chain B, Crystal Structure Of Katg At Ph 4.5
pdb|2FXH|A Chain A, Crystal Structure Of Katg At Ph 6.5
pdb|2FXH|B Chain B, Crystal Structure Of Katg At Ph 6.5
pdb|3N3N|A Chain A, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3N|B Chain B, Crystal Structure Of B. Pseudomallei Katg With
Isonicotinic Acid Hydrazide Bound
pdb|3N3P|A Chain A, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
pdb|3N3P|B Chain B, Crystal Structure Of Catalase-Peroxidase Katg With
Isonicotinic Acid Hydrazide And Amp Bound
Length = 748
Score = 28.1 bits (61), Expect = 2.2, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 92 PSPLMDLNDLISNFAKKGLSAKEMVAL-SGAHTIGQ 126
P P+ D+ FA+ ++ +E VAL +G HT G+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|3N3R|A Chain A, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
pdb|3N3R|B Chain B, Crystal Structure Of The E198a Variant Of
Catalase-Peroxidase Katg Of Burkholderia Pseudomallei
Length = 748
Score = 28.1 bits (61), Expect = 2.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 92 PSPLMDLNDLISNFAKKGLSAKEMVAL-SGAHTIGQ 126
P P+ D+ FA+ ++ +E VAL +G HT G+
Sbjct: 248 PDPVAAARDIRDTFARMAMNDEETVALIAGGHTFGK 283
>pdb|3FMU|A Chain A, Crystal Structure Analysis Of Fungal Versatile Peroxidase
From Pleurotus Eryngii
Length = 331
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 66 GGPSWTVQLGRRDXXXXXXXXVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIG 125
GG LGR D + +P P ++ +++ G S E+V+L +H+I
Sbjct: 116 GGVRIPFFLGRPDAVAASPDHL---VPEPFDSVDSILARMGDAGFSPVEVVSLLASHSIA 172
Query: 126 QA 127
A
Sbjct: 173 AA 174
>pdb|3P5J|A Chain A, The Structure Of The Human Rnase H2 Complex Defines Key
Interaction Interfaces Relevant To Enzyme Function And
Human Disease
Length = 301
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 29 GFEVIDSVKSEVESLCPGVVSCADILAVAARDSVV 63
G EV +VK++ +SL P VVS A I A ARD V
Sbjct: 160 GIEV--TVKAKADSLFP-VVSAASIFAKVARDKAV 191
>pdb|3KIO|A Chain A, Mouse Rnase H2 Complex
Length = 301
Score = 26.6 bits (57), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 29 GFEVIDSVKSEVESLCPGVVSCADILAVAARDSVV 63
G EV +VK++ +SL P VVS A I A ARD V
Sbjct: 160 GIEV--TVKAKADSLFP-VVSAASIFAKVARDKAV 191
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,740,440
Number of Sequences: 62578
Number of extensions: 119049
Number of successful extensions: 375
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 253
Number of HSP's gapped (non-prelim): 106
length of query: 171
length of database: 14,973,337
effective HSP length: 92
effective length of query: 79
effective length of database: 9,216,161
effective search space: 728076719
effective search space used: 728076719
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)