Query 039303
Match_columns 171
No_of_seqs 164 out of 1122
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 08:25:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039303.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039303hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1E-56 2.2E-61 383.8 14.9 166 1-171 71-244 (324)
2 cd00693 secretory_peroxidase H 100.0 8.2E-54 1.8E-58 363.8 15.2 169 1-171 48-223 (298)
3 PF00141 peroxidase: Peroxidas 100.0 5.2E-49 1.1E-53 323.7 4.2 154 1-167 32-188 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.1E-41 2.3E-46 287.6 10.8 139 1-153 53-194 (289)
5 PLN02364 L-ascorbate peroxidas 100.0 1.2E-41 2.7E-46 282.8 10.8 139 1-153 55-197 (250)
6 cd00691 ascorbate_peroxidase A 100.0 2.7E-41 5.9E-46 281.3 10.4 148 1-153 43-196 (253)
7 PLN02879 L-ascorbate peroxidas 100.0 4.8E-41 1E-45 279.2 10.7 139 1-153 56-197 (251)
8 cd00692 ligninase Ligninase an 100.0 2.2E-38 4.8E-43 271.6 11.2 138 1-151 65-207 (328)
9 cd00314 plant_peroxidase_like 100.0 2.2E-38 4.8E-43 263.2 9.9 146 1-154 41-198 (255)
10 cd08201 plant_peroxidase_like_ 100.0 5.9E-37 1.3E-41 255.2 7.3 135 1-152 64-212 (264)
11 cd00649 catalase_peroxidase_1 100.0 4.9E-33 1.1E-37 242.9 11.7 150 14-167 100-290 (409)
12 TIGR00198 cat_per_HPI catalase 100.0 2.9E-32 6.2E-37 251.2 12.3 138 14-156 110-285 (716)
13 PRK15061 catalase/hydroperoxid 100.0 4.3E-29 9.3E-34 229.6 12.1 149 14-167 112-303 (726)
14 cd08200 catalase_peroxidase_2 99.9 5.2E-25 1.1E-29 185.9 8.9 138 14-152 60-223 (297)
15 PRK15061 catalase/hydroperoxid 99.8 6.5E-21 1.4E-25 175.8 9.3 138 14-152 485-648 (726)
16 TIGR00198 cat_per_HPI catalase 99.8 4.6E-21 1E-25 177.3 8.3 135 14-152 478-636 (716)
17 COG0376 KatG Catalase (peroxid 99.8 1.1E-18 2.5E-23 155.9 8.3 114 13-131 124-276 (730)
18 COG0376 KatG Catalase (peroxid 97.9 2E-05 4.3E-10 71.8 5.2 133 15-152 496-652 (730)
19 KOG0400 40S ribosomal protein 69.2 3.8 8.3E-05 31.4 2.1 35 95-129 30-65 (151)
20 PTZ00411 transaldolase-like pr 50.1 5 0.00011 35.1 -0.2 59 65-123 180-251 (333)
21 PRK12346 transaldolase A; Prov 46.7 9.4 0.0002 33.2 1.0 49 65-113 169-220 (316)
22 PRK01362 putative translaldola 38.6 16 0.00036 29.8 1.2 43 65-117 121-163 (214)
23 TIGR00875 fsa_talC_mipB fructo 36.1 15 0.00032 30.0 0.6 42 65-116 121-162 (213)
24 PRK13859 type IV secretion sys 34.4 31 0.00067 22.2 1.7 28 53-80 9-39 (55)
25 PF09533 DUF2380: Predicted li 32.4 82 0.0018 25.4 4.2 27 97-123 106-132 (188)
26 PRK05269 transaldolase B; Prov 30.2 15 0.00032 31.9 -0.3 49 65-113 170-221 (318)
27 PF04225 OapA: Opacity-associa 27.6 21 0.00046 24.8 0.1 24 99-122 11-34 (85)
28 COG2897 SseA Rhodanese-related 27.4 84 0.0018 26.9 3.7 35 91-125 68-102 (285)
29 PF11020 DUF2610: Domain of un 27.3 89 0.0019 21.9 3.1 31 31-61 49-79 (82)
30 COG1105 FruK Fructose-1-phosph 26.8 1.1E+02 0.0024 26.6 4.4 52 90-157 105-158 (310)
31 PRK12309 transaldolase/EF-hand 26.3 25 0.00055 31.4 0.4 48 65-113 174-225 (391)
32 PF13710 ACT_5: ACT domain; PD 23.5 55 0.0012 21.2 1.5 21 97-117 5-25 (63)
33 PF14919 MTBP_mid: MDM2-bindin 23.2 91 0.002 27.4 3.2 69 19-118 265-333 (342)
34 PF13521 AAA_28: AAA domain; P 20.9 32 0.0007 25.8 -0.0 14 116-129 2-15 (163)
35 cd00956 Transaldolase_FSA Tran 20.4 41 0.0009 27.2 0.5 39 65-113 121-159 (211)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1e-56 Score=383.77 Aligned_cols=166 Identities=45% Similarity=0.814 Sum_probs=153.7
Q ss_pred CCceeeeccCCCCCcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCCC
Q 039303 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDST 80 (171)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~ 80 (171)
||||||||+++ ..|+++++|. +++||++|+.||+++|++||++||||||||||||+||+++|||.|+|++||||+.
T Consensus 71 GCDaSvLl~~~---~~Ek~a~~N~-~l~Gf~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~ 146 (324)
T PLN03030 71 GCDASILIDGS---NTEKTALPNL-LLRGYDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGR 146 (324)
T ss_pred CCceEEeeCCC---cccccCCCCc-CcchHHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCC
Confidence 89999999965 3699999997 8999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeecccceeeccccccccccccC--------CCCCCHHHHHHHHh
Q 039303 81 TASSSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARCLLFRQRIYN--------ETNIDSEFATSLKS 152 (171)
Q Consensus 81 ~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHtiG~a~c~~f~~r~~~--------dp~~d~~y~~~L~~ 152 (171)
+|...++. +||.|+.++++|++.|+++||+.+|||+||||||||++||..|.+|+|| ||+||+.|+++||+
T Consensus 147 ~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~ 225 (324)
T PLN03030 147 VSLASDAS-NLPGFTDSIDVQKQKFAAKGLNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQA 225 (324)
T ss_pred CCCccccc-CCcCCCCCHHHHHHHHHHcCCCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhc
Confidence 98777664 8999999999999999999999999999999999999999999999995 78999999999999
Q ss_pred cCCCCCCCCCccCCCCCCC
Q 039303 153 NCPSSGGDDNLSSLDATSP 171 (171)
Q Consensus 153 ~Cp~~~~~~~~~~~d~~tp 171 (171)
.||..+..+.++.||+.||
T Consensus 226 ~Cp~~~~~~~~~~lD~~Tp 244 (324)
T PLN03030 226 LCPQNGDGSRRIALDTGSS 244 (324)
T ss_pred cCCCCCCCCccccCCCCCC
Confidence 9996333334678998887
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=8.2e-54 Score=363.76 Aligned_cols=169 Identities=56% Similarity=0.975 Sum_probs=157.6
Q ss_pred CCceeeeccCCCCCcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCCC
Q 039303 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDST 80 (171)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~ 80 (171)
||||||||+.+.++..|+++++|. +++||++|+.||+++|++||++|||||||+||+|+||+++|||.|+|++||+|+.
T Consensus 48 GcDaSill~~~~~~~~E~~~~~N~-~l~g~~~i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~ 126 (298)
T cd00693 48 GCDASVLLDSTANNTSEKDAPPNL-SLRGFDVIDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGR 126 (298)
T ss_pred CcceeEEecCCCCCchhccCCCCC-CcchhHHHHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCc
Confidence 899999999887778999999998 7899999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeecccceeeccccccccccccC-------CCCCCHHHHHHHHhc
Q 039303 81 TASSSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARCLLFRQRIYN-------ETNIDSEFATSLKSN 153 (171)
Q Consensus 81 ~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHtiG~a~c~~f~~r~~~-------dp~~d~~y~~~L~~~ 153 (171)
.+.+..+ ++||.|+.++++|++.|+++||+++|||||+||||||++||..|.+|+|+ ||+||+.|+..|++.
T Consensus 127 ~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~ 205 (298)
T cd00693 127 VSSANDV-GNLPSPFFSVSQLISLFASKGLTVTDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKK 205 (298)
T ss_pred ccCcccc-cCCCCcccCHHHHHHHHHHcCCCHHHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCC
Confidence 8876655 78999999999999999999999999999999999999999999999984 789999999999999
Q ss_pred CCCCCCCCCccCCCCCCC
Q 039303 154 CPSSGGDDNLSSLDATSP 171 (171)
Q Consensus 154 Cp~~~~~~~~~~~d~~tp 171 (171)
||...+...+++||+.||
T Consensus 206 Cp~~~~~~~~~~lD~~Tp 223 (298)
T cd00693 206 CPAGGDDDTLVPLDPGTP 223 (298)
T ss_pred CCCCCCCCccccCCCCCC
Confidence 997544455778998886
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=5.2e-49 Score=323.70 Aligned_cols=154 Identities=55% Similarity=0.937 Sum_probs=135.7
Q ss_pred CCceeeeccCCCCCcccccccCcCCCch-hHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCC
Q 039303 1 GCDASVLLDDTSSFTGEKSASANVNSIR-GFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDS 79 (171)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~~~-g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~ 79 (171)
|||||||+. ..|+++++|. +++ ++++|+.||+++|++||++|||||||+||+++||+.+|||.|+|++||+|+
T Consensus 32 GcDgSil~~-----~~e~~~~~N~-gl~~~~~~i~~ik~~~~~~cp~~VS~ADiialAa~~av~~~GGP~~~v~~GR~D~ 105 (230)
T PF00141_consen 32 GCDGSILLF-----SAEKDAPPNR-GLRDGFDVIDPIKAKLEAACPGVVSCADIIALAARDAVELCGGPRIPVPLGRRDG 105 (230)
T ss_dssp SSSSGGGGS-----TTGGGSGGGT-THHHHHHHHHHHHHHHCHHSTTTS-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-
T ss_pred ccccceecc-----cccccccccc-CcceeeechhhHHhhhcccccCCCCHHHHHHHHhhhccccccccccccccccccc
Confidence 899999993 4799999998 555 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeecccceeeccccccccccccC--CCCCCHHHHHHHHhcCCCC
Q 039303 80 TTASSSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARCLLFRQRIYN--ETNIDSEFATSLKSNCPSS 157 (171)
Q Consensus 80 ~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHtiG~a~c~~f~~r~~~--dp~~d~~y~~~L~~~Cp~~ 157 (171)
..++..++ .+||.|+.++++|++.|+++||+++|||||+||||||++||..|. |+|. ||.||+.|..+ .| ..
T Consensus 106 ~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~-rl~~~~dp~~d~~~~~~---~C-~~ 179 (230)
T PF00141_consen 106 TVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFS-RLYFPPDPTMDPGYAGQ---NC-NS 179 (230)
T ss_dssp SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTG-GTSCSSGTTSTHHHHHH---SS-ST
T ss_pred cccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccceecccc-cccccccccccccccee---cc-CC
Confidence 99988766 679999999999999999999999999999999999999999999 9995 68999999988 89 43
Q ss_pred CCCCCccCCC
Q 039303 158 GGDDNLSSLD 167 (171)
Q Consensus 158 ~~~~~~~~~d 167 (171)
++++ .+++|
T Consensus 180 ~~~~-~~~~d 188 (230)
T PF00141_consen 180 GGDN-GVPLD 188 (230)
T ss_dssp SGCT-CEESS
T ss_pred Cccc-ccccc
Confidence 3333 55666
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.1e-41 Score=287.64 Aligned_cols=139 Identities=28% Similarity=0.384 Sum_probs=123.3
Q ss_pred CCceeeeccCCCCCcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCCC
Q 039303 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDST 80 (171)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~ 80 (171)
||||||++. .|+++++|.++.+||++|+.||+++ ++|||||||+||||+||+.+|||.|+|++||+|+.
T Consensus 53 GcDgSIll~------~E~~~~~N~gL~~g~~vid~iK~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~ 121 (289)
T PLN02608 53 GPNGSIRNE------EEYSHGANNGLKIAIDLCEPVKAKH-----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSN 121 (289)
T ss_pred CCCeeeecc------cccCCccccchHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCC
Confidence 899999984 5999999984336999999999987 38999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeecccceeecccccc--ccccccCCC-CCCHHHHHHHHhc
Q 039303 81 TASSSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARCLL--FRQRIYNET-NIDSEFATSLKSN 153 (171)
Q Consensus 81 ~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHtiG~a~c~~--f~~r~~~dp-~~d~~y~~~L~~~ 153 (171)
+++ ++++||.|+.+++++++.|+++||+.+|||||+||||||++||.. |.+.|...| +|||.||++|...
T Consensus 122 ~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTiG~ahc~r~g~~g~~~~Tp~~FDN~Yy~~ll~~ 194 (289)
T PLN02608 122 ACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTLGRAHPERSGFDGPWTKEPLKFDNSYFVELLKG 194 (289)
T ss_pred cCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccccccccccccCCCCCCCCCCCCCccChHHHHHHHcC
Confidence 875 346899999999999999999999999999999999999999963 333333466 8999999999754
No 5
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=1.2e-41 Score=282.83 Aligned_cols=139 Identities=27% Similarity=0.389 Sum_probs=123.3
Q ss_pred CCceeeeccCCCCCcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCCC
Q 039303 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDST 80 (171)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~ 80 (171)
||||||.. ..|+++++|.++.+||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|+.
T Consensus 55 G~dgSi~~------~~E~~~~~N~gl~~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~ 123 (250)
T PLN02364 55 GPFGTMRF------DAEQAHGANSGIHIALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKP 123 (250)
T ss_pred CCCccccc------cccccCCCccCHHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcc
Confidence 89999943 46999999985558999999999988 48999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCHHHHHHHHHH-cCCCcccceeecccceeeccccc--cccccccCCC-CCCHHHHHHHHhc
Q 039303 81 TASSSAVNTNIPSPLMDLNDLISNFAK-KGLSAKEMVALSGAHTIGQARCL--LFRQRIYNET-NIDSEFATSLKSN 153 (171)
Q Consensus 81 ~s~~~~~~~~lP~p~~~~~~l~~~F~~-~Gl~~~dlVaLsGaHtiG~a~c~--~f~~r~~~dp-~~d~~y~~~L~~~ 153 (171)
++.+ .++||.|+.++++|++.|++ +||+.+|||||+||||||++||. .|.+.+...| +|||.||++|+..
T Consensus 124 ~s~~---~~~lP~p~~~~~~l~~~F~~~~Gl~~~d~VaLsGaHTiG~~hc~r~~~~g~~~~tp~~fDn~Yy~~ll~~ 197 (250)
T PLN02364 124 QPPP---EGRLPDATKGCDHLRDVFAKQMGLSDKDIVALSGAHTLGRCHKDRSGFEGAWTSNPLIFDNSYFKELLSG 197 (250)
T ss_pred cccc---cCCCCCCCcCHHHHHHHHHHhcCCCHHHheeeecceeeccccCCCCCCCCCCCCCCCccchHHHHHHhcC
Confidence 8763 46899999999999999997 69999999999999999999993 3444454567 8999999999853
No 6
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=2.7e-41 Score=281.34 Aligned_cols=148 Identities=22% Similarity=0.338 Sum_probs=128.8
Q ss_pred CCceeeeccCCC---CCcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCc
Q 039303 1 GCDASVLLDDTS---SFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRR 77 (171)
Q Consensus 1 GCDaSill~~~~---~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~ 77 (171)
+||+|++++... .+.+|+++++|.++.+||++|++||+++ | +|||||||+||+|+||+.+|||.|+|++||+
T Consensus 43 ~~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~----~-~VScADilalAar~Av~~~GGP~~~v~~GR~ 117 (253)
T cd00691 43 TYDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY----P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRV 117 (253)
T ss_pred ccccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc----C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCC
Confidence 588888885432 3457999999985559999999999986 4 8999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeecccceeeccccccc--cccccCCC-CCCHHHHHHHHhc
Q 039303 78 DSTTASSSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARCLLF--RQRIYNET-NIDSEFATSLKSN 153 (171)
Q Consensus 78 D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHtiG~a~c~~f--~~r~~~dp-~~d~~y~~~L~~~ 153 (171)
|+.++....+.++||.|+.++++|+++|+++||+.+|||||+||||||++||..+ .+.+...| .||+.|+++|+..
T Consensus 118 D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaHTiG~a~c~~~~~~g~~~~tp~~FDn~Yy~~ll~~ 196 (253)
T cd00691 118 DASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAHTLGRCHKERSGYDGPWTKNPLKFDNSYFKELLEE 196 (253)
T ss_pred CCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccceeecccccCCCCCCCCCCCCCcccHHHHHHHhcC
Confidence 9999987777788999999999999999999999999999999999999999642 22233356 8999999999763
No 7
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=4.8e-41 Score=279.20 Aligned_cols=139 Identities=24% Similarity=0.332 Sum_probs=124.4
Q ss_pred CCceeeeccCCCCCcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCCC
Q 039303 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDST 80 (171)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~ 80 (171)
||||||.+. .|+++++|.++..++++|+.||+++ ++|||||||+||+++||+.+|||.|+|++||+|+.
T Consensus 56 G~~Gsirf~------~E~~~~~N~gL~~~~~~i~~iK~~~-----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~ 124 (251)
T PLN02879 56 GPFGTIRHP------QELAHDANNGLDIAVRLLDPIKELF-----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKV 124 (251)
T ss_pred CCCeeecCh------hhccCCCcCChHHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCC
Confidence 899999863 5999999985545999999999987 48999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeecccceeeccccc--cccccccCCC-CCCHHHHHHHHhc
Q 039303 81 TASSSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARCL--LFRQRIYNET-NIDSEFATSLKSN 153 (171)
Q Consensus 81 ~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHtiG~a~c~--~f~~r~~~dp-~~d~~y~~~L~~~ 153 (171)
.+. ++++||.|+.++++|++.|++|||+++|||||+||||||++||. .|.+.|...| +|||+||++|...
T Consensus 125 ~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ah~~r~g~~g~~d~tp~~FDN~Yy~~ll~~ 197 (251)
T PLN02879 125 EPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSG 197 (251)
T ss_pred CCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccccccccccccccCCCCCCCCccceeHHHHHHHHcC
Confidence 875 45689999999999999999999999999999999999999995 4544555567 8999999999864
No 8
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.2e-38 Score=271.60 Aligned_cols=138 Identities=25% Similarity=0.413 Sum_probs=120.3
Q ss_pred CCceeeeccCCCCCcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhccccc-ccCCCceeecCCCcCC
Q 039303 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVV-AFGGPSWTVQLGRRDS 79 (171)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~-~~GGP~~~v~~GR~D~ 79 (171)
||||||||+.+ .|+++++|. +++ ++|+.||..+|++| |||||||+||+|+||+ .+|||.|+|++||+|+
T Consensus 65 GcDgSill~~~----~E~~~~~N~-gL~--~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~ 134 (328)
T cd00692 65 GADGSIVLFDD----IETAFHANI-GLD--EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDA 134 (328)
T ss_pred CcCceeecCCc----ccccCCCCC-CHH--HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCC
Confidence 89999999853 699999997 555 89999999999998 9999999999999999 5699999999999999
Q ss_pred CCCcccCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeecccceeecccccc--ccc-cccCCC-CCCHHHHHHHH
Q 039303 80 TTASSSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIGQARCLL--FRQ-RIYNET-NIDSEFATSLK 151 (171)
Q Consensus 80 ~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHtiG~a~c~~--f~~-r~~~dp-~~d~~y~~~L~ 151 (171)
..+. ++++||.|+.++++|++.|++|||+.+|||||+||||||++|... +.+ .|...| +||+.||++|+
T Consensus 135 ~~s~---~~g~LP~p~~sv~~l~~~F~~~Gf~~~E~VaLsGAHTiG~a~~~Dps~~g~p~D~TP~~FDn~Yf~~ll 207 (328)
T cd00692 135 TQPA---PDGLVPEPFDSVDKILARFADAGFSPDELVALLAAHSVAAQDFVDPSIAGTPFDSTPGVFDTQFFIETL 207 (328)
T ss_pred CCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHhhhcccccccccCCCCCCCCCCCCCCCcchhcHHHHHHHH
Confidence 9886 446899999999999999999999999999999999999999521 222 122246 89999999865
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=2.2e-38 Score=263.20 Aligned_cols=146 Identities=28% Similarity=0.413 Sum_probs=131.8
Q ss_pred CCceeeeccCCCCCcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhccccccc--CCCceeecCCCcC
Q 039303 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAF--GGPSWTVQLGRRD 78 (171)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~--GGP~~~v~~GR~D 78 (171)
||||||+++. |+++++|.++.+++++|+.||.+++. |++|||||||+||+++||+.+ |||.|+|++||+|
T Consensus 41 g~dgsi~~~~------e~~~~~N~~l~~~~~~l~~ik~~~~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D 112 (255)
T cd00314 41 GADGSIRFEP------ELDRPENGGLDKALRALEPIKSAYDG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLD 112 (255)
T ss_pred CCCceEeccc------cccCcccccHHHHHHHHHHHHHHcCC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCC
Confidence 7999999984 99999998667999999999999998 899999999999999999999 9999999999999
Q ss_pred CCCCc--ccCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeec-cccee-eccccccccccc----cCCC-CCCHHHHHH
Q 039303 79 STTAS--SSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALS-GAHTI-GQARCLLFRQRI----YNET-NIDSEFATS 149 (171)
Q Consensus 79 ~~~s~--~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHti-G~a~c~~f~~r~----~~dp-~~d~~y~~~ 149 (171)
+..+. ...+.+++|.+..+++++++.|+++||+++|||||+ ||||| |++||..|..|+ ...| +|||+|++.
T Consensus 113 ~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~GaHti~G~~~~~~~~~~~~~~~~~tp~~fDN~yy~~ 192 (255)
T cd00314 113 ATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSAGAHTLGGKNHGDLLNYEGSGLWTSTPFTFDNAYFKN 192 (255)
T ss_pred CchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhccCCeeccCcccCCCCCcccCCCCCCCCCccchHHHHH
Confidence 99763 334567789999999999999999999999999999 99999 999999998773 2356 899999999
Q ss_pred HHh-cC
Q 039303 150 LKS-NC 154 (171)
Q Consensus 150 L~~-~C 154 (171)
|+. .|
T Consensus 193 l~~~~~ 198 (255)
T cd00314 193 LLDMNW 198 (255)
T ss_pred HhcCCc
Confidence 976 44
No 10
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=5.9e-37 Score=255.21 Aligned_cols=135 Identities=30% Similarity=0.446 Sum_probs=113.1
Q ss_pred CCceeeeccCCCCCcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCCC
Q 039303 1 GCDASVLLDDTSSFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDST 80 (171)
Q Consensus 1 GCDaSill~~~~~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~ 80 (171)
||||||+++.. .+|+...+++.++++|+.|+.+ +||||||||||+++||+.+|||.|+|++||+|+.
T Consensus 64 GcDgSIlle~~---~~En~G~~~n~~l~~~~~i~~~----------~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~ 130 (264)
T cd08201 64 GLDASIQYELD---RPENIGSGFNTTLNFFVNFYSP----------RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDAT 130 (264)
T ss_pred CCCcceeecCC---ChhhccCchhhccccceeeccC----------ccCHHHHHHHHHHHHHHHcCCCeecccccCCCcc
Confidence 89999999743 3577733322367788776543 6999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeecc-cceeeccccccccc------------cccCCC-CCCHHH
Q 039303 81 TASSSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALSG-AHTIGQARCLLFRQ------------RIYNET-NIDSEF 146 (171)
Q Consensus 81 ~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG-aHtiG~a~c~~f~~------------r~~~dp-~~d~~y 146 (171)
.+.+. .||.|+.++++|++.|++|||+.+|||+|+| |||||++||..|.+ .|...| .||++|
T Consensus 131 ~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~g~~~~~~~p~dstp~~FDn~~ 206 (264)
T cd08201 131 EAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPPGSVPDTVLQFFDTTIQFDNKV 206 (264)
T ss_pred ccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCCccccCCCCCCCCCccccchHH
Confidence 87643 4999999999999999999999999999995 99999999988721 233456 899999
Q ss_pred HHHHHh
Q 039303 147 ATSLKS 152 (171)
Q Consensus 147 ~~~L~~ 152 (171)
+.+++.
T Consensus 207 f~E~l~ 212 (264)
T cd08201 207 VTEYLS 212 (264)
T ss_pred HHHHhc
Confidence 988874
No 11
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=4.9e-33 Score=242.95 Aligned_cols=150 Identities=23% Similarity=0.285 Sum_probs=129.2
Q ss_pred CcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCCCCCccc--------
Q 039303 14 FTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDSTTASSS-------- 85 (171)
Q Consensus 14 ~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~-------- 85 (171)
+.+|++++.|.++.+++.+++.||+++. ..||+||+|+||+.+||+.+|||.|+|..||.|...+...
T Consensus 100 f~pe~~~~~N~gL~~a~~~L~pik~k~~----~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~ 175 (409)
T cd00649 100 FAPLNSWPDNVNLDKARRLLWPIKQKYG----NKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKE 175 (409)
T ss_pred cccccCcHhhhhHHHHHHHHHHHHHHcC----CCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchh
Confidence 4569999999977789999999999884 3699999999999999999999999999999999654210
Q ss_pred ---------------------------CCCC--CCCCCCCCHHHHHHHHHHcCCCcccceee-cccceeecccccccccc
Q 039303 86 ---------------------------AVNT--NIPSPLMDLNDLISNFAKKGLSAKEMVAL-SGAHTIGQARCLLFRQR 135 (171)
Q Consensus 86 ---------------------------~~~~--~lP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGaHtiG~a~c~~f~~r 135 (171)
.+++ .||.|..++.+|++.|.+|||+.+||||| +||||||++||..|.+|
T Consensus 176 ~~~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~r 255 (409)
T cd00649 176 WLADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASH 255 (409)
T ss_pred cccccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCccccccc
Confidence 0122 69999999999999999999999999999 59999999999999999
Q ss_pred ccCCCCCCHHHHHHHH--hcCCCCCC-CCCccCCC
Q 039303 136 IYNETNIDSEFATSLK--SNCPSSGG-DDNLSSLD 167 (171)
Q Consensus 136 ~~~dp~~d~~y~~~L~--~~Cp~~~~-~~~~~~~d 167 (171)
+..||.+++.|...|+ ..||.... +..+..||
T Consensus 256 lg~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglD 290 (409)
T cd00649 256 VGPEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLE 290 (409)
T ss_pred CCCCCCcCHHHHHhhcccccCCCCCCCCCccccCC
Confidence 9889999999999995 79997432 23345577
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.98 E-value=2.9e-32 Score=251.25 Aligned_cols=138 Identities=22% Similarity=0.244 Sum_probs=122.7
Q ss_pred CcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCCCCCc----------
Q 039303 14 FTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDSTTAS---------- 83 (171)
Q Consensus 14 ~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~---------- 83 (171)
|.+|++++.|.++.+++.+++.||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 110 f~P~~sw~~N~~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~ 185 (716)
T TIGR00198 110 FAPLNSWPDNVNLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKE 185 (716)
T ss_pred cccccCchhhhhHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccc
Confidence 45699999998777788888888774 7889999999999999999999999999999999994321
Q ss_pred ---------------------------ccCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeec-ccceeecccccccccc
Q 039303 84 ---------------------------SSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALS-GAHTIGQARCLLFRQR 135 (171)
Q Consensus 84 ---------------------------~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHtiG~a~c~~f~~r 135 (171)
+..+ ..+|.|..++.+|++.|.+|||+.+|||||+ ||||||++||..|.+|
T Consensus 186 ~l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~-~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~r 264 (716)
T TIGR00198 186 WLTSSREDRESLENPLAATEMGLIYVNPEGP-DGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAEL 264 (716)
T ss_pred hhhccccccccccccchhhhccccccCcccc-cCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCccccc
Confidence 1222 2699999999999999999999999999995 9999999999999999
Q ss_pred ccCCCCCCHHHHHHHHhcCCC
Q 039303 136 IYNETNIDSEFATSLKSNCPS 156 (171)
Q Consensus 136 ~~~dp~~d~~y~~~L~~~Cp~ 156 (171)
+-.||.+++.|.+.|+++||.
T Consensus 265 lg~dP~~~~~~~~gLg~~c~~ 285 (716)
T TIGR00198 265 IGPDPEGAPIEEQGLGWHNQY 285 (716)
T ss_pred CCCCCCcCHHHHHHhcccCCC
Confidence 977999999999999999985
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.96 E-value=4.3e-29 Score=229.57 Aligned_cols=149 Identities=23% Similarity=0.282 Sum_probs=128.1
Q ss_pred CcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCCCCCcc---------
Q 039303 14 FTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDSTTASS--------- 84 (171)
Q Consensus 14 ~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~--------- 84 (171)
|.+|.+++.|.++.+++.+++.||+++. ..||+||+|+||+.+|||.+|||.|+|..||.|...+..
T Consensus 112 f~pe~~w~~N~gL~ka~~~L~pik~ky~----~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~ 187 (726)
T PRK15061 112 FAPLNSWPDNVNLDKARRLLWPIKQKYG----NKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKE 187 (726)
T ss_pred CcccccchhhhhHHHHHHHHHHHHHHhC----CCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccc
Confidence 4579999999977789999999999884 479999999999999999999999999999999864321
Q ss_pred ------------------------------cCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeec-ccceeecccccccc
Q 039303 85 ------------------------------SAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALS-GAHTIGQARCLLFR 133 (171)
Q Consensus 85 ------------------------------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHtiG~a~c~~f~ 133 (171)
+++ ..+|.|..++.+|++.|.+|||+.+|||||+ ||||||++||..|.
T Consensus 188 ~l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp-~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~ 266 (726)
T PRK15061 188 WLGGDERYSGERDLENPLAAVQMGLIYVNPEGP-NGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDA 266 (726)
T ss_pred ccccccccccccccccchhhhhccceecCCCCC-CCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCcc
Confidence 112 2389999999999999999999999999995 99999999999999
Q ss_pred ccccCCCCCCHHHHHHHH--hcCCCCCC-CCCccCCC
Q 039303 134 QRIYNETNIDSEFATSLK--SNCPSSGG-DDNLSSLD 167 (171)
Q Consensus 134 ~r~~~dp~~d~~y~~~L~--~~Cp~~~~-~~~~~~~d 167 (171)
+|+-.||.+++.|.+.|. ..||...+ ++.+..||
T Consensus 267 ~rlgpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGld 303 (726)
T PRK15061 267 SHVGPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLE 303 (726)
T ss_pred cccCCCCCcCHHHHHhccccccCCCCCCCCCccccCC
Confidence 999889999999999995 79997422 33345577
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.92 E-value=5.2e-25 Score=185.93 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=113.3
Q ss_pred CcccccccCcCC--CchhHHHHHHHHHHHHhh-CCC-CccHHHHHHHhhcccccccCC-----CceeecCCCcCCCCCcc
Q 039303 14 FTGEKSASANVN--SIRGFEVIDSVKSEVESL-CPG-VVSCADILAVAARDSVVAFGG-----PSWTVQLGRRDSTTASS 84 (171)
Q Consensus 14 ~~~E~~~~~N~~--~~~g~~~i~~iK~~le~~-cp~-~VScADilalAa~~av~~~GG-----P~~~v~~GR~D~~~s~~ 84 (171)
+.+|++++.|.+ +.+.+.+++.||+++... .++ .||+||+|+||+..|||.+|| |.|++.+||.|...+..
T Consensus 60 l~pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~t 139 (297)
T cd08200 60 LAPQKDWEVNEPEELAKVLAVLEGIQKEFNESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQT 139 (297)
T ss_pred CccccCcCccCcHHHHHHHHHHHHHHHHhcccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCC
Confidence 457999999987 567889999999998532 222 699999999999999999999 99999999999986532
Q ss_pred cCCC---CCCCCCC------------CCHHHHHHHHHHcCCCcccceeecccc-eeeccccccccccccCCC-CCCHHHH
Q 039303 85 SAVN---TNIPSPL------------MDLNDLISNFAKKGLSAKEMVALSGAH-TIGQARCLLFRQRIYNET-NIDSEFA 147 (171)
Q Consensus 85 ~~~~---~~lP~p~------------~~~~~l~~~F~~~Gl~~~dlVaLsGaH-tiG~a~c~~f~~r~~~dp-~~d~~y~ 147 (171)
. +. .++|.+. ...+.|++.|.+|||+.+|||||+||| ++|+.|..++.+-|..+| +|||+|+
T Consensus 140 d-~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s~~G~wT~~p~~f~N~fF 218 (297)
T cd08200 140 D-VESFEVLEPKADGFRNYLKKGYRVPPEEMLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSKHGVFTDRPGVLTNDFF 218 (297)
T ss_pred C-cccccccCCCCcccccccccCCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCCCCCCCcCCCCccccHHH
Confidence 1 11 1334332 234789999999999999999999997 799999877888888888 8999999
Q ss_pred HHHHh
Q 039303 148 TSLKS 152 (171)
Q Consensus 148 ~~L~~ 152 (171)
..|..
T Consensus 219 ~nLLd 223 (297)
T cd08200 219 VNLLD 223 (297)
T ss_pred HHHhc
Confidence 99974
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.84 E-value=6.5e-21 Score=175.82 Aligned_cols=138 Identities=19% Similarity=0.212 Sum_probs=112.9
Q ss_pred CcccccccCcC--CCchhHHHHHHHHHHHHhhCC--CCccHHHHHHHhhccccccc---CC--CceeecCCCcCCCCCcc
Q 039303 14 FTGEKSASANV--NSIRGFEVIDSVKSEVESLCP--GVVSCADILAVAARDSVVAF---GG--PSWTVQLGRRDSTTASS 84 (171)
Q Consensus 14 ~~~E~~~~~N~--~~~~g~~~i~~iK~~le~~cp--~~VScADilalAa~~av~~~---GG--P~~~v~~GR~D~~~s~~ 84 (171)
+.+|++++.|. ++.+.+.+++.||+++...-. ..||.||+|+||+..|||.+ || |.|++..||.|......
T Consensus 485 l~Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t 564 (726)
T PRK15061 485 LAPQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT 564 (726)
T ss_pred cccccCccccCHHHHHHHHHHHHHHHHHHhhccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC
Confidence 34699999998 566789999999999854321 26999999999999999998 58 99999999999986532
Q ss_pred cCCC---CCCCCCC------------CCHHHHHHHHHHcCCCcccceeecccc-eeeccccccccccccCCC-CCCHHHH
Q 039303 85 SAVN---TNIPSPL------------MDLNDLISNFAKKGLSAKEMVALSGAH-TIGQARCLLFRQRIYNET-NIDSEFA 147 (171)
Q Consensus 85 ~~~~---~~lP~p~------------~~~~~l~~~F~~~Gl~~~dlVaLsGaH-tiG~a~c~~f~~r~~~dp-~~d~~y~ 147 (171)
++. .++|... .....|++.|.++||+..|||||+||| ++|..|-.++.+-|...| +|+|+|+
T Consensus 565 -d~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S~~G~~T~~p~~fsNdfF 643 (726)
T PRK15061 565 -DVESFAVLEPKADGFRNYLKKGYSVSPEELLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGSKHGVFTDRPGVLTNDFF 643 (726)
T ss_pred -CcccccccCCCCccccccccccCCCCHHHHHHHHHHhCCCChHHHhheecchhhcccCCCCCCCCCCcCCCCccccHHH
Confidence 222 2456532 234789999999999999999999997 799999877777788888 9999999
Q ss_pred HHHHh
Q 039303 148 TSLKS 152 (171)
Q Consensus 148 ~~L~~ 152 (171)
..|..
T Consensus 644 vnLLd 648 (726)
T PRK15061 644 VNLLD 648 (726)
T ss_pred HHHhc
Confidence 99974
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.84 E-value=4.6e-21 Score=177.33 Aligned_cols=135 Identities=20% Similarity=0.256 Sum_probs=110.1
Q ss_pred CcccccccCc--CCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhccccccc---CCC--ceeecCCCcCCCCCcccC
Q 039303 14 FTGEKSASAN--VNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAF---GGP--SWTVQLGRRDSTTASSSA 86 (171)
Q Consensus 14 ~~~E~~~~~N--~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~---GGP--~~~v~~GR~D~~~s~~~~ 86 (171)
+.+|++++.| .++.+.+.+++.||+++.. ..||.||+|+||+..|||.+ ||| .|++..||.|...... +
T Consensus 478 l~pe~~w~~N~p~gL~~vl~~Le~Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d 553 (716)
T TIGR00198 478 LEPQKNWPVNEPTRLAKVLAVLEKIQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-D 553 (716)
T ss_pred cchhcCcccCCHHHHHHHHHHHHHHHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-C
Confidence 3469999999 7666788999999998852 26999999999999999998 898 5799999999986532 2
Q ss_pred CCCCCC-----C----------CCCCHHHHHHHHHHcCCCcccceeeccc-ceeeccccccccccccCCC-CCCHHHHHH
Q 039303 87 VNTNIP-----S----------PLMDLNDLISNFAKKGLSAKEMVALSGA-HTIGQARCLLFRQRIYNET-NIDSEFATS 149 (171)
Q Consensus 87 ~~~~lP-----~----------p~~~~~~l~~~F~~~Gl~~~dlVaLsGa-HtiG~a~c~~f~~r~~~dp-~~d~~y~~~ 149 (171)
+.+..| . .......|++.|.++||+..|||||+|| |++|+.|...+.+-|..+| +|+|+|+..
T Consensus 554 ~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s~~G~~T~~p~~f~NdfF~~ 633 (716)
T TIGR00198 554 AESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGSKHGVFTDRVGVLSNDFFVN 633 (716)
T ss_pred ccccccCCCCCcccchhccccccCCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCCCCCCCcCCCCccccHHHHH
Confidence 222222 1 1223566889999999999999999999 5999999988888888888 899999999
Q ss_pred HHh
Q 039303 150 LKS 152 (171)
Q Consensus 150 L~~ 152 (171)
|..
T Consensus 634 LLd 636 (716)
T TIGR00198 634 LLD 636 (716)
T ss_pred Hhc
Confidence 975
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.1e-18 Score=155.94 Aligned_cols=114 Identities=24% Similarity=0.321 Sum_probs=102.3
Q ss_pred CCcccccccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCCCCCcc--------
Q 039303 13 SFTGEKSASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDSTTASS-------- 84 (171)
Q Consensus 13 ~~~~E~~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~-------- 84 (171)
+|.++..+|.|.++.+++.++..||+++. ..||+||++.|++.+|++.+|++.+.+..||.|-..+..
T Consensus 124 RFaPlnSWPDN~nLDKarRLLWPIKkKYG----~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~ 199 (730)
T COG0376 124 RFAPLNSWPDNANLDKARRLLWPIKKKYG----RKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEK 199 (730)
T ss_pred ecccccCCCcccchHHHHHHhhhHhHhhc----ccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccc
Confidence 47789999999988899999999999985 589999999999999999999999999999999776543
Q ss_pred ------------------------------cCCCCCCCCCCCCHHHHHHHHHHcCCCcccceeec-ccceeecccccc
Q 039303 85 ------------------------------SAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVALS-GAHTIGQARCLL 131 (171)
Q Consensus 85 ------------------------------~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GaHtiG~a~c~~ 131 (171)
.+ ++..|.|..+..+++..|++|+++.+|.|||+ |+||+|++|...
T Consensus 200 ~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEG-png~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag 276 (730)
T COG0376 200 TWLGDERYSGDRDLENPLAAVQMGLIYVNPEG-PNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAG 276 (730)
T ss_pred cccccccccccccccCchhhheeeeEEeCCCC-CCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCC
Confidence 23 34689999999999999999999999999999 599999999744
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=97.86 E-value=2e-05 Score=71.82 Aligned_cols=133 Identities=20% Similarity=0.252 Sum_probs=86.1
Q ss_pred cccccccCcCC--CchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhccccccc---CCCc--eeecCCCcCCCCCcccCC
Q 039303 15 TGEKSASANVN--SIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAF---GGPS--WTVQLGRRDSTTASSSAV 87 (171)
Q Consensus 15 ~~E~~~~~N~~--~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~---GGP~--~~v~~GR~D~~~s~~~~~ 87 (171)
.+.+++..|.. +-+-+.+++.|.+... ..||.||+|+|++..+|+.+ .|-. ++|..||.|+...... +
T Consensus 496 aPqkdWevN~P~~l~kvl~~le~iq~~fn----kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v 570 (730)
T COG0376 496 APQKDWEVNQPAELAKVLAVLEKIQKEFN----KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-V 570 (730)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHhc----CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-h
Confidence 35777877742 2245678888887776 47999999999999999974 5654 5778999998754211 1
Q ss_pred CC-C-C-CC-----------CCCC-HHHHHHHHHHcCCCcccceeeccc-ceeeccccccccccccCCC-CCCHHHHHHH
Q 039303 88 NT-N-I-PS-----------PLMD-LNDLISNFAKKGLSAKEMVALSGA-HTIGQARCLLFRQRIYNET-NIDSEFATSL 150 (171)
Q Consensus 88 ~~-~-l-P~-----------p~~~-~~~l~~~F~~~Gl~~~dlVaLsGa-HtiG~a~c~~f~~r~~~dp-~~d~~y~~~L 150 (171)
.. . | |- ...+ -.-|++.=.-.+|+.-||++|.|+ .-+|..+..+=.+-+.+-| .+.|.|+-.|
T Consensus 571 ~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAqlL~LtapemtVLiGGlRvLg~n~g~s~~GVfT~~pg~LtndFFvnL 650 (730)
T COG0376 571 ESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQLLTLTAPEMTVLIGGLRVLGANYGGSKHGVFTDRPGVLTNDFFVNL 650 (730)
T ss_pred hhhhcccccchhhhhhccCCCcCCHHHHHHHHHHHhccCCccceEEEcceEeeccCCCCCccceeccCcccccchhhhhh
Confidence 00 0 1 11 1112 233566666789999999999987 4555444322222222335 7899998887
Q ss_pred Hh
Q 039303 151 KS 152 (171)
Q Consensus 151 ~~ 152 (171)
..
T Consensus 651 lD 652 (730)
T COG0376 651 LD 652 (730)
T ss_pred hh
Confidence 54
No 19
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=69.23 E-value=3.8 Score=31.41 Aligned_cols=35 Identities=40% Similarity=0.614 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHcCCCcccc-eeecccceeecccc
Q 039303 95 LMDLNDLISNFAKKGLSAKEM-VALSGAHTIGQARC 129 (171)
Q Consensus 95 ~~~~~~l~~~F~~~Gl~~~dl-VaLsGaHtiG~a~c 129 (171)
.+++.+.+-.|+++||++.++ |.|--+|-||+++-
T Consensus 30 ~ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r~ 65 (151)
T KOG0400|consen 30 ADDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVRF 65 (151)
T ss_pred HHHHHHHHHHHHHcCCChhHceeeeecccCcchhhe
Confidence 456667778999999999887 78889999998864
No 20
>PTZ00411 transaldolase-like protein; Provisional
Probab=50.07 E-value=5 Score=35.13 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=33.6
Q ss_pred cCCCceeecCCCcCCCCCcccCCCCCCCCC---CCCHHHHHHHHHHcCCCc----------ccceeecccce
Q 039303 65 FGGPSWTVQLGRRDSTTASSSAVNTNIPSP---LMDLNDLISNFAKKGLSA----------KEMVALSGAHT 123 (171)
Q Consensus 65 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p---~~~~~~l~~~F~~~Gl~~----------~dlVaLsGaHt 123 (171)
+|-..+..++||-+...-.+.......+.. -..+.++..+|++.|+.. +++..|.|+|.
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~ 251 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDK 251 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCE
Confidence 477889999999754322111111111212 235677888888888864 44455556653
No 21
>PRK12346 transaldolase A; Provisional
Probab=46.74 E-value=9.4 Score=33.20 Aligned_cols=49 Identities=6% Similarity=0.055 Sum_probs=29.3
Q ss_pred cCCCceeecCCCcCCCCCcccCCCCCCCC---CCCCHHHHHHHHHHcCCCcc
Q 039303 65 FGGPSWTVQLGRRDSTTASSSAVNTNIPS---PLMDLNDLISNFAKKGLSAK 113 (171)
Q Consensus 65 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~---p~~~~~~l~~~F~~~Gl~~~ 113 (171)
+|-..|..++||-|...-.........+. .-..+.++..+|++.|+..+
T Consensus 169 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~ 220 (316)
T PRK12346 169 AGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETI 220 (316)
T ss_pred cCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcE
Confidence 58888999999987642211110001111 13457778889988888643
No 22
>PRK01362 putative translaldolase; Provisional
Probab=38.65 E-value=16 Score=29.82 Aligned_cols=43 Identities=16% Similarity=0.243 Sum_probs=29.9
Q ss_pred cCCCceeecCCCcCCCCCcccCCCCCCCCCCCCHHHHHHHHHHcCCCccccee
Q 039303 65 FGGPSWTVQLGRRDSTTASSSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMVA 117 (171)
Q Consensus 65 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVa 117 (171)
.|.-++..++||.|-..- ++..-+.++.+.++..|++.+=|+|
T Consensus 121 aGa~yispyvgRi~d~g~----------dg~~~i~~~~~~~~~~~~~tkilaA 163 (214)
T PRK01362 121 AGATYVSPFVGRLDDIGT----------DGMELIEDIREIYDNYGFDTEIIAA 163 (214)
T ss_pred cCCcEEEeecchHhhcCC----------CHHHHHHHHHHHHHHcCCCcEEEEe
Confidence 366678999999865421 2344578888999999988664443
No 23
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=36.06 E-value=15 Score=30.02 Aligned_cols=42 Identities=12% Similarity=0.185 Sum_probs=29.7
Q ss_pred cCCCceeecCCCcCCCCCcccCCCCCCCCCCCCHHHHHHHHHHcCCCcccce
Q 039303 65 FGGPSWTVQLGRRDSTTASSSAVNTNIPSPLMDLNDLISNFAKKGLSAKEMV 116 (171)
Q Consensus 65 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlV 116 (171)
.|.-++..++||.|-..- ++..-+.++.+.|+..|++.+=|+
T Consensus 121 aGa~yispyvgRi~d~g~----------dg~~~v~~~~~~~~~~~~~tkIla 162 (213)
T TIGR00875 121 AGATYVSPFVGRLDDIGG----------DGMKLIEEVKTIFENHAPDTEVIA 162 (213)
T ss_pred cCCCEEEeecchHHHcCC----------CHHHHHHHHHHHHHHcCCCCEEEE
Confidence 366678999999766421 234457788899999999877443
No 24
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=34.39 E-value=31 Score=22.20 Aligned_cols=28 Identities=32% Similarity=0.588 Sum_probs=20.6
Q ss_pred HHHHhhc---ccccccCCCceeecCCCcCCC
Q 039303 53 ILAVAAR---DSVVAFGGPSWTVQLGRRDST 80 (171)
Q Consensus 53 ilalAa~---~av~~~GGP~~~v~~GR~D~~ 80 (171)
+++||+- |-...+.||.+++-+||--..
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqpt 39 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPT 39 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCC
Confidence 5667764 556668999999999995443
No 25
>PF09533 DUF2380: Predicted lipoprotein of unknown function (DUF2380); InterPro: IPR011755 This family consists of at least 9 paralogs in Myxococcus xanthus, a member of the Deltaproteobacteria. One appears truncated toward the N terminus; the others are predicted lipoproteins. The function is unknown.
Probab=32.44 E-value=82 Score=25.41 Aligned_cols=27 Identities=11% Similarity=0.261 Sum_probs=22.7
Q ss_pred CHHHHHHHHHHcCCCcccceeecccce
Q 039303 97 DLNDLISNFAKKGLSAKEMVALSGAHT 123 (171)
Q Consensus 97 ~~~~l~~~F~~~Gl~~~dlVaLsGaHt 123 (171)
...+|...|.++|+++.|.+.++..|.
T Consensus 106 Qa~~la~wF~~~Gi~IHd~ti~Ip~~v 132 (188)
T PF09533_consen 106 QAEELAEWFERRGIDIHDYTIPIPRDV 132 (188)
T ss_pred CcHHHHHHHHHcCCChhheeEecCHHH
Confidence 345789999999999999999887644
No 26
>PRK05269 transaldolase B; Provisional
Probab=30.23 E-value=15 Score=31.91 Aligned_cols=49 Identities=10% Similarity=0.072 Sum_probs=29.8
Q ss_pred cCCCceeecCCCcCCCCCcccCCCCC---CCCCCCCHHHHHHHHHHcCCCcc
Q 039303 65 FGGPSWTVQLGRRDSTTASSSAVNTN---IPSPLMDLNDLISNFAKKGLSAK 113 (171)
Q Consensus 65 ~GGP~~~v~~GR~D~~~s~~~~~~~~---lP~p~~~~~~l~~~F~~~Gl~~~ 113 (171)
+|...+..++||-|...-...+.... --+.-..+.++.+.|++.|+..+
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 47788999999987532111000000 11134457888889999999765
No 27
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=27.62 E-value=21 Score=24.82 Aligned_cols=24 Identities=33% Similarity=0.495 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCCcccceeecccc
Q 039303 99 NDLISNFAKKGLSAKEMVALSGAH 122 (171)
Q Consensus 99 ~~l~~~F~~~Gl~~~dlVaLsGaH 122 (171)
+.|-..|.+.||+..||-.|+-+.
T Consensus 11 DtLs~iF~~~gls~~dl~~v~~~~ 34 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVLEAD 34 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHHHHG
T ss_pred CcHHHHHHHcCCCHHHHHHHHhcc
Confidence 357789999999999998888544
No 28
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=27.38 E-value=84 Score=26.91 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=29.7
Q ss_pred CCCCCCCHHHHHHHHHHcCCCcccceeecccceee
Q 039303 91 IPSPLMDLNDLISNFAKKGLSAKEMVALSGAHTIG 125 (171)
Q Consensus 91 lP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGaHtiG 125 (171)
+|.+.-+.+++.+.|.++|++..+.|++-+.....
T Consensus 68 ~~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd~~~~ 102 (285)
T COG2897 68 LPHMLPSPEQFAKLLGELGIRNDDTVVVYDDGGGF 102 (285)
T ss_pred CCCCCCCHHHHHHHHHHcCCCCCCEEEEECCCCCe
Confidence 67778888999999999999999999999864433
No 29
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=27.26 E-value=89 Score=21.89 Aligned_cols=31 Identities=19% Similarity=0.121 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhhCCCCccHHHHHHHhhccc
Q 039303 31 EVIDSVKSEVESLCPGVVSCADILAVAARDS 61 (171)
Q Consensus 31 ~~i~~iK~~le~~cp~~VScADilalAa~~a 61 (171)
+|.|.+.+.++.+-.+.||.+|++++|=..|
T Consensus 49 ~V~~sl~kL~~La~~N~v~feeLc~YAL~~a 79 (82)
T PF11020_consen 49 KVMDSLSKLYKLAKENNVSFEELCVYALGVA 79 (82)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 5666666655555567999999999885544
No 30
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=26.83 E-value=1.1e+02 Score=26.60 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=36.5
Q ss_pred CCCCCCCCHHHHHHHHHH--cCCCcccceeecccceeeccccccccccccCCCCCCHHHHHHHHhcCCCC
Q 039303 90 NIPSPLMDLNDLISNFAK--KGLSAKEMVALSGAHTIGQARCLLFRQRIYNETNIDSEFATSLKSNCPSS 157 (171)
Q Consensus 90 ~lP~p~~~~~~l~~~F~~--~Gl~~~dlVaLsGaHtiG~a~c~~f~~r~~~dp~~d~~y~~~L~~~Cp~~ 157 (171)
+.|.|.-+-+++.++-.. +-+...|+|+|+|.= .|.+.++||.+|..+|.+.
T Consensus 105 n~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSl----------------P~g~~~d~y~~li~~~~~~ 158 (310)
T COG1105 105 NFPGPEISEAELEQFLEQLKALLESDDIVVLSGSL----------------PPGVPPDAYAELIRILRQQ 158 (310)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCC----------------CCCCCHHHHHHHHHHHHhc
Confidence 577887666665544332 347889999999821 3468899999998888653
No 31
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=26.31 E-value=25 Score=31.37 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=29.1
Q ss_pred cCCCceeecCCCcCCCCCcccCCCCCCCCC----CCCHHHHHHHHHHcCCCcc
Q 039303 65 FGGPSWTVQLGRRDSTTASSSAVNTNIPSP----LMDLNDLISNFAKKGLSAK 113 (171)
Q Consensus 65 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p----~~~~~~l~~~F~~~Gl~~~ 113 (171)
+|-..|..++||-+-..-...+. ..+|.. -..+.++.++|+..|+..+
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g~-~~~~~~~dpGv~~v~~i~~~~~~~~~~T~ 225 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETGR-DSYPGAEDPGVQSVTQIYNYYKKFGYKTE 225 (391)
T ss_pred cCCCEEEeecchhhhhhhhccCC-CccccccchHHHHHHHHHHHHHhcCCCcE
Confidence 57788999999976632211110 112322 2357788889999888643
No 32
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=23.53 E-value=55 Score=21.19 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHcCCCccccee
Q 039303 97 DLNDLISNFAKKGLSAKEMVA 117 (171)
Q Consensus 97 ~~~~l~~~F~~~Gl~~~dlVa 117 (171)
-+..+...|.++||+.+.|.+
T Consensus 5 vL~Ri~~vf~rRg~nI~sl~v 25 (63)
T PF13710_consen 5 VLNRITGVFRRRGFNIESLSV 25 (63)
T ss_dssp HHHHHHHHHHTTT-EECEEEE
T ss_pred HHHHHHHHHhcCCeEEeeEEe
Confidence 367889999999999998765
No 33
>PF14919 MTBP_mid: MDM2-binding
Probab=23.19 E-value=91 Score=27.43 Aligned_cols=69 Identities=20% Similarity=0.363 Sum_probs=46.0
Q ss_pred cccCcCCCchhHHHHHHHHHHHHhhCCCCccHHHHHHHhhcccccccCCCceeecCCCcCCCCCcccCCCCCCCCCCCCH
Q 039303 19 SASANVNSIRGFEVIDSVKSEVESLCPGVVSCADILAVAARDSVVAFGGPSWTVQLGRRDSTTASSSAVNTNIPSPLMDL 98 (171)
Q Consensus 19 ~~~~N~~~~~g~~~i~~iK~~le~~cp~~VScADilalAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~ 98 (171)
+||+- .-++.+|.++++|.+.... .++- .-.-.+|++|+...+.. -.++
T Consensus 265 eWPER-~VLQNlEn~ek~kQK~R~~---~l~~------------------SseqLLG~Kdg~r~s~t---------LLDA 313 (342)
T PF14919_consen 265 EWPER-HVLQNLENFEKAKQKMRTG---SLPR------------------SSEQLLGHKDGQRDSVT---------LLDA 313 (342)
T ss_pred cCcHH-HHHHHHHHHHHHHHHHhcc---cCCC------------------CHHHhcCCCCCCCCCcc---------cccH
Confidence 44443 2456789999999988631 1110 12345899999775432 3468
Q ss_pred HHHHHHHHHcCCCcccceee
Q 039303 99 NDLISNFAKKGLSAKEMVAL 118 (171)
Q Consensus 99 ~~l~~~F~~~Gl~~~dlVaL 118 (171)
.+|+..|-.-||-..|+--|
T Consensus 314 kELLK~FT~dGlPvgDLQPL 333 (342)
T PF14919_consen 314 KELLKYFTSDGLPVGDLQPL 333 (342)
T ss_pred HHHHhhcCCCCcccCcCccc
Confidence 89999999999998886443
No 34
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=20.85 E-value=32 Score=25.79 Aligned_cols=14 Identities=14% Similarity=0.510 Sum_probs=9.8
Q ss_pred eeecccceeecccc
Q 039303 116 VALSGAHTIGQARC 129 (171)
Q Consensus 116 VaLsGaHtiG~a~c 129 (171)
|+++|+|+.|++-.
T Consensus 2 I~i~G~~stGKTTL 15 (163)
T PF13521_consen 2 IVITGGPSTGKTTL 15 (163)
T ss_dssp EEEE--TTSHHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 68999999998753
No 35
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=20.35 E-value=41 Score=27.21 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=27.5
Q ss_pred cCCCceeecCCCcCCCCCcccCCCCCCCCCCCCHHHHHHHHHHcCCCcc
Q 039303 65 FGGPSWTVQLGRRDSTTASSSAVNTNIPSPLMDLNDLISNFAKKGLSAK 113 (171)
Q Consensus 65 ~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gl~~~ 113 (171)
+|..++..++||.|-..- ++..-+.++.+.+++.|+..+
T Consensus 121 AGA~yvsP~vgR~~~~g~----------dg~~~i~~i~~~~~~~~~~tk 159 (211)
T cd00956 121 AGATYVSPFVGRIDDLGG----------DGMELIREIRTIFDNYGFDTK 159 (211)
T ss_pred cCCCEEEEecChHhhcCC----------CHHHHHHHHHHHHHHcCCCce
Confidence 366678889999766421 233457788899999998744
Done!