Query 039311
Match_columns 909
No_of_seqs 605 out of 5263
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 08:28:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039311.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039311hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 6.9E-98 1E-102 940.6 72.1 805 14-872 264-1101(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 4E-58 8.7E-63 549.1 23.9 399 7-417 218-651 (889)
3 PLN00113 leucine-rich repeat r 100.0 6.5E-29 1.4E-33 314.5 25.5 370 260-639 41-439 (968)
4 PF00931 NB-ARC: NB-ARC domain 100.0 7.8E-30 1.7E-34 276.8 6.6 211 12-222 61-284 (287)
5 PLN00113 leucine-rich repeat r 100.0 3.3E-27 7.1E-32 299.0 24.5 357 306-667 158-589 (968)
6 KOG0444 Cytoskeletal regulator 99.9 5.5E-26 1.2E-30 245.6 -6.2 331 288-645 34-379 (1255)
7 PLN03210 Resistant to P. syrin 99.9 5.9E-22 1.3E-26 251.4 25.3 313 307-645 583-910 (1153)
8 KOG0444 Cytoskeletal regulator 99.9 5.1E-25 1.1E-29 238.1 -3.8 341 312-669 7-382 (1255)
9 KOG4194 Membrane glycoprotein 99.9 4.5E-23 9.8E-28 222.4 4.9 328 292-639 82-427 (873)
10 KOG0472 Leucine-rich repeat pr 99.9 6.1E-24 1.3E-28 220.0 -7.6 298 339-645 113-497 (565)
11 KOG0472 Leucine-rich repeat pr 99.8 1.4E-24 3E-29 224.7 -14.3 321 306-647 62-476 (565)
12 KOG4194 Membrane glycoprotein 99.8 9.3E-22 2E-26 212.4 5.0 352 291-660 55-427 (873)
13 KOG0618 Serine/threonine phosp 99.8 1.8E-21 3.8E-26 221.3 -2.9 341 308-661 41-488 (1081)
14 PRK15387 E3 ubiquitin-protein 99.7 2.3E-17 4.9E-22 194.8 17.1 257 342-642 203-459 (788)
15 KOG0618 Serine/threonine phosp 99.7 1.9E-19 4.2E-24 204.9 -4.2 339 287-642 44-490 (1081)
16 PRK15387 E3 ubiquitin-protein 99.7 6E-16 1.3E-20 182.8 16.1 242 341-624 223-465 (788)
17 PRK15370 E3 ubiquitin-protein 99.6 5.1E-16 1.1E-20 184.7 12.4 243 341-639 179-426 (754)
18 PRK15370 E3 ubiquitin-protein 99.6 2.8E-15 6E-20 178.5 10.2 175 339-530 198-374 (754)
19 KOG4658 Apoptotic ATPase [Sign 99.6 3.3E-15 7.3E-20 180.4 7.5 410 192-669 409-849 (889)
20 KOG0617 Ras suppressor protein 99.4 6.9E-15 1.5E-19 136.3 -3.5 125 339-464 32-159 (264)
21 KOG0617 Ras suppressor protein 99.4 6.6E-15 1.4E-19 136.4 -4.8 166 478-660 35-201 (264)
22 cd00116 LRR_RI Leucine-rich re 99.3 1.4E-13 2.9E-18 151.9 -0.4 252 361-639 22-318 (319)
23 KOG4237 Extracellular matrix p 99.3 2.1E-13 4.5E-18 142.5 -0.3 125 339-464 66-197 (498)
24 cd00116 LRR_RI Leucine-rich re 99.2 1.7E-12 3.6E-17 143.2 -2.0 259 339-617 22-319 (319)
25 KOG4237 Extracellular matrix p 99.2 3.3E-12 7.2E-17 133.6 0.2 259 345-639 51-333 (498)
26 KOG0532 Leucine-rich repeat (L 98.8 4.2E-10 9.1E-15 123.2 -2.6 189 390-639 80-271 (722)
27 KOG0532 Leucine-rich repeat (L 98.8 5.2E-10 1.1E-14 122.5 -3.5 200 443-660 60-271 (722)
28 COG4886 Leucine-rich repeat (L 98.7 2E-08 4.4E-13 114.2 7.2 154 477-645 141-294 (394)
29 KOG4341 F-box protein containi 98.7 8.2E-10 1.8E-14 117.0 -5.4 274 386-699 139-437 (483)
30 COG4886 Leucine-rich repeat (L 98.7 1.9E-08 4.1E-13 114.4 5.2 174 340-515 116-293 (394)
31 KOG1259 Nischarin, modulator o 98.6 1.5E-08 3.2E-13 102.7 0.8 99 363-464 285-383 (490)
32 PF14580 LRR_9: Leucine-rich r 98.5 6.6E-08 1.4E-12 94.7 4.1 85 354-441 11-97 (175)
33 KOG1259 Nischarin, modulator o 98.5 2E-08 4.3E-13 101.8 0.4 195 404-639 210-410 (490)
34 PF14580 LRR_9: Leucine-rich r 98.5 7.6E-08 1.7E-12 94.3 3.8 57 340-396 42-99 (175)
35 KOG3207 Beta-tubulin folding c 98.5 2.4E-08 5.3E-13 106.6 -0.3 35 603-637 299-335 (505)
36 KOG3207 Beta-tubulin folding c 98.5 2.3E-08 5E-13 106.8 -0.6 152 309-465 118-281 (505)
37 KOG2120 SCF ubiquitin ligase, 98.4 6.4E-09 1.4E-13 105.4 -6.4 109 404-512 206-326 (419)
38 KOG1909 Ran GTPase-activating 98.3 4.2E-08 9.2E-13 102.1 -2.8 247 381-639 26-309 (382)
39 PRK15386 type III secretion pr 98.2 4.7E-06 1E-10 91.5 9.5 43 428-473 48-90 (426)
40 PLN03150 hypothetical protein; 98.2 3.1E-06 6.7E-11 101.2 7.4 107 363-469 419-529 (623)
41 KOG4341 F-box protein containi 98.1 1.3E-07 2.7E-12 100.7 -4.6 255 381-667 160-444 (483)
42 KOG1909 Ran GTPase-activating 98.1 2.5E-07 5.4E-12 96.6 -2.9 38 581-618 269-311 (382)
43 KOG0531 Protein phosphatase 1, 98.1 7.1E-07 1.5E-11 101.8 -0.5 58 360-418 93-150 (414)
44 PLN03150 hypothetical protein; 98.0 5.2E-06 1.1E-10 99.2 6.3 109 341-449 419-532 (623)
45 PRK15386 type III secretion pr 98.0 1.5E-05 3.3E-10 87.5 8.8 60 339-402 51-111 (426)
46 PF13855 LRR_8: Leucine rich r 98.0 4.3E-06 9.4E-11 67.0 3.3 58 582-639 1-60 (61)
47 KOG2120 SCF ubiquitin ligase, 98.0 1.9E-07 4.1E-12 95.0 -6.1 180 478-665 187-379 (419)
48 PF13855 LRR_8: Leucine rich r 97.9 1.7E-05 3.6E-10 63.6 4.3 55 364-418 3-59 (61)
49 KOG0531 Protein phosphatase 1, 97.8 6.3E-06 1.4E-10 94.1 0.6 167 339-509 94-265 (414)
50 PRK04841 transcriptional regul 97.7 0.00034 7.4E-09 88.8 15.5 201 49-258 120-335 (903)
51 PF12799 LRR_4: Leucine Rich r 97.6 8.9E-05 1.9E-09 54.7 3.8 39 583-621 2-40 (44)
52 KOG1859 Leucine-rich repeat pr 97.5 1E-06 2.2E-11 99.5 -10.2 95 342-441 166-263 (1096)
53 KOG1859 Leucine-rich repeat pr 97.3 1.5E-05 3.3E-10 90.4 -4.1 97 410-510 166-265 (1096)
54 PF12799 LRR_4: Leucine Rich r 97.3 0.00024 5.1E-09 52.4 3.1 41 605-646 1-41 (44)
55 KOG2982 Uncharacterized conser 97.2 0.00012 2.7E-09 75.0 1.8 206 406-666 69-285 (418)
56 KOG3665 ZYG-1-like serine/thre 97.0 0.00018 3.9E-09 85.9 0.2 100 432-532 122-229 (699)
57 KOG2982 Uncharacterized conser 97.0 0.00028 6.1E-09 72.4 1.2 35 340-374 71-109 (418)
58 KOG3665 ZYG-1-like serine/thre 96.9 0.00024 5.3E-09 84.9 0.5 109 498-618 147-263 (699)
59 KOG1644 U2-associated snRNP A' 96.6 0.0029 6.3E-08 61.8 5.2 100 362-464 42-149 (233)
60 KOG1947 Leucine rich repeat pr 96.4 0.00048 1E-08 80.5 -1.8 34 384-417 187-223 (482)
61 TIGR03015 pepcterm_ATPase puta 96.2 0.17 3.7E-06 54.0 16.9 154 12-168 82-266 (269)
62 PRK06893 DNA replication initi 96.2 0.01 2.2E-07 61.7 7.0 131 13-146 51-200 (229)
63 KOG2739 Leucine-rich acidic nu 96.2 0.0016 3.6E-08 66.3 0.8 82 362-444 43-128 (260)
64 KOG1644 U2-associated snRNP A' 96.1 0.0083 1.8E-07 58.8 5.3 77 364-442 21-98 (233)
65 KOG4579 Leucine-rich repeat (L 96.1 0.00054 1.2E-08 62.6 -2.6 81 339-419 52-134 (177)
66 PF05729 NACHT: NACHT domain 95.7 0.022 4.7E-07 55.7 6.4 70 48-117 79-162 (166)
67 COG5238 RNA1 Ran GTPase-activa 95.7 0.00083 1.8E-08 68.2 -3.8 42 453-510 90-131 (388)
68 COG5238 RNA1 Ran GTPase-activa 95.6 0.0046 1E-07 62.9 1.1 185 339-534 29-253 (388)
69 KOG4579 Leucine-rich repeat (L 95.3 0.0013 2.9E-08 60.1 -3.3 58 581-638 76-133 (177)
70 TIGR00635 ruvB Holliday juncti 95.3 0.12 2.7E-06 56.3 11.1 146 78-237 130-289 (305)
71 PRK00411 cdc6 cell division co 94.9 0.52 1.1E-05 53.5 15.3 179 13-199 98-306 (394)
72 KOG1947 Leucine rich repeat pr 94.3 0.0068 1.5E-07 70.8 -2.0 135 498-637 187-330 (482)
73 KOG2739 Leucine-rich acidic nu 94.2 0.03 6.4E-07 57.4 2.5 84 384-468 42-129 (260)
74 KOG2123 Uncharacterized conser 93.8 0.0033 7.1E-08 64.2 -5.1 53 342-395 21-73 (388)
75 PRK00080 ruvB Holliday junctio 93.0 0.55 1.2E-05 51.8 10.2 152 78-237 151-310 (328)
76 PF01637 Arch_ATPase: Archaeal 92.6 0.32 7E-06 50.3 7.4 109 38-147 104-232 (234)
77 KOG2123 Uncharacterized conser 92.6 0.0043 9.3E-08 63.4 -6.4 98 311-414 18-123 (388)
78 PF13173 AAA_14: AAA domain 92.6 0.16 3.5E-06 47.4 4.5 71 40-110 51-127 (128)
79 PF00560 LRR_1: Leucine Rich R 92.1 0.059 1.3E-06 33.0 0.6 17 607-623 2-18 (22)
80 PF00560 LRR_1: Leucine Rich R 92.1 0.08 1.7E-06 32.4 1.2 20 363-382 1-20 (22)
81 PRK07471 DNA polymerase III su 90.7 2.7 5.8E-05 46.9 12.3 96 49-150 140-239 (365)
82 PRK09087 hypothetical protein; 90.6 2.8 6E-05 43.4 11.6 91 53-147 90-193 (226)
83 TIGR02928 orc1/cdc6 family rep 89.9 7 0.00015 43.7 15.2 178 13-197 87-296 (365)
84 PF13306 LRR_5: Leucine rich r 89.7 1.6 3.5E-05 40.3 8.3 83 303-393 3-89 (129)
85 PF13504 LRR_7: Leucine rich r 89.4 0.2 4.3E-06 28.6 1.1 7 631-637 4-10 (17)
86 PF13504 LRR_7: Leucine rich r 88.4 0.31 6.7E-06 27.8 1.4 14 583-596 2-15 (17)
87 PF07725 LRR_3: Leucine Rich R 87.7 0.39 8.6E-06 28.5 1.6 20 363-382 1-20 (20)
88 TIGR03420 DnaA_homol_Hda DnaA 87.5 1.6 3.4E-05 45.1 7.3 96 52-149 92-201 (226)
89 PRK05564 DNA polymerase III su 87.0 4.8 0.0001 44.0 11.0 94 50-149 93-190 (313)
90 COG2909 MalT ATP-dependent tra 86.6 5.1 0.00011 48.2 11.3 232 12-258 77-341 (894)
91 TIGR01242 26Sp45 26S proteasom 85.9 2.8 6E-05 47.0 8.6 90 50-143 215-328 (364)
92 PRK13342 recombination factor 85.0 8.1 0.00017 44.1 11.9 100 48-150 90-197 (413)
93 PRK08727 hypothetical protein; 84.8 2.8 6.2E-05 43.6 7.5 92 51-144 94-199 (233)
94 PF13306 LRR_5: Leucine rich r 84.0 2.5 5.5E-05 39.0 6.1 73 363-440 13-89 (129)
95 smart00369 LRR_TYP Leucine-ric 82.0 1.2 2.5E-05 28.4 2.0 21 604-624 1-21 (26)
96 smart00370 LRR Leucine-rich re 82.0 1.2 2.5E-05 28.4 2.0 21 604-624 1-21 (26)
97 TIGR00678 holB DNA polymerase 81.6 7.6 0.00016 38.8 8.9 89 49-145 95-187 (188)
98 PRK14963 DNA polymerase III su 81.1 13 0.00028 43.5 11.6 96 49-146 115-214 (504)
99 PRK08084 DNA replication initi 80.4 5.2 0.00011 41.7 7.4 91 52-144 99-204 (235)
100 PRK09112 DNA polymerase III su 80.4 9.6 0.00021 42.3 9.8 98 49-150 140-241 (351)
101 PRK05642 DNA replication initi 79.3 6.4 0.00014 41.0 7.7 101 42-145 90-204 (234)
102 PRK06645 DNA polymerase III su 79.2 9.4 0.0002 44.5 9.6 97 48-146 126-226 (507)
103 PRK06620 hypothetical protein; 78.9 6.1 0.00013 40.5 7.2 87 51-142 86-182 (214)
104 KOG3864 Uncharacterized conser 77.8 0.41 8.8E-06 47.3 -1.6 39 552-592 122-161 (221)
105 PRK14961 DNA polymerase III su 76.9 19 0.00041 40.3 11.1 97 49-147 118-218 (363)
106 KOG0473 Leucine-rich repeat pr 75.6 0.084 1.8E-06 52.9 -7.1 21 422-442 101-121 (326)
107 TIGR02903 spore_lon_C ATP-depe 75.4 8.6 0.00019 46.2 8.2 112 39-152 281-398 (615)
108 COG3899 Predicted ATPase [Gene 74.8 13 0.00028 46.5 9.8 172 42-216 145-335 (849)
109 PRK07003 DNA polymerase III su 73.4 41 0.00089 40.9 12.8 97 50-148 119-220 (830)
110 TIGR02397 dnaX_nterm DNA polym 72.9 19 0.00042 39.9 9.9 100 49-150 116-219 (355)
111 COG1373 Predicted ATPase (AAA+ 72.2 12 0.00027 42.3 8.1 63 50-113 94-162 (398)
112 PTZ00112 origin recognition co 72.0 21 0.00046 43.8 10.0 173 14-194 830-1025(1164)
113 PRK05707 DNA polymerase III su 71.2 23 0.0005 38.9 9.7 93 50-149 107-203 (328)
114 PRK06090 DNA polymerase III su 70.4 42 0.0009 36.7 11.3 107 50-169 108-218 (319)
115 smart00369 LRR_TYP Leucine-ric 69.2 4 8.7E-05 25.9 2.0 21 581-601 1-21 (26)
116 smart00370 LRR Leucine-rich re 69.2 4 8.7E-05 25.9 2.0 21 581-601 1-21 (26)
117 KOG3864 Uncharacterized conser 67.8 3.2 6.9E-05 41.3 1.8 60 607-666 103-168 (221)
118 KOG0473 Leucine-rich repeat pr 67.0 0.4 8.7E-06 48.2 -4.5 80 340-419 42-122 (326)
119 PRK12402 replication factor C 66.3 37 0.00081 37.3 10.3 96 50-147 125-224 (337)
120 COG3903 Predicted ATPase [Gene 66.2 3 6.6E-05 46.0 1.5 194 39-237 77-292 (414)
121 PF13401 AAA_22: AAA domain; P 66.1 11 0.00024 34.7 5.2 73 12-87 49-125 (131)
122 PF14516 AAA_35: AAA-like doma 65.2 95 0.0021 34.2 13.1 55 96-156 192-246 (331)
123 PRK12323 DNA polymerase III su 63.9 36 0.00078 40.7 9.6 100 48-149 122-225 (700)
124 smart00364 LRR_BAC Leucine-ric 63.9 4.3 9.3E-05 26.0 1.2 17 606-622 3-19 (26)
125 PRK08903 DnaA regulatory inact 62.7 22 0.00049 36.6 7.2 100 52-153 92-203 (227)
126 PLN03025 replication factor C 62.7 33 0.00072 37.5 8.9 93 49-143 98-194 (319)
127 PF00308 Bac_DnaA: Bacterial d 62.2 23 0.00049 36.5 7.0 125 13-140 46-199 (219)
128 PRK14086 dnaA chromosomal repl 61.8 42 0.00091 39.9 9.7 87 53-141 380-480 (617)
129 PRK14087 dnaA chromosomal repl 60.6 29 0.00064 40.0 8.2 99 51-149 207-319 (450)
130 PRK07940 DNA polymerase III su 60.5 52 0.0011 37.2 10.0 93 50-149 117-213 (394)
131 PRK14959 DNA polymerase III su 60.5 45 0.00097 39.8 9.7 104 48-153 117-225 (624)
132 PRK08691 DNA polymerase III su 60.2 38 0.00082 40.8 9.1 97 49-147 118-218 (709)
133 PRK06964 DNA polymerase III su 58.8 1.3E+02 0.0027 33.4 12.4 92 49-150 131-226 (342)
134 smart00367 LRR_CC Leucine-rich 57.9 7.5 0.00016 24.7 1.6 15 628-642 2-16 (26)
135 PRK00440 rfc replication facto 56.2 70 0.0015 34.7 10.2 94 50-145 102-199 (319)
136 cd00561 CobA_CobO_BtuR ATP:cor 54.8 15 0.00032 35.6 3.8 63 40-104 84-154 (159)
137 PRK13341 recombination factor 54.5 52 0.0011 40.3 9.3 91 49-143 108-211 (725)
138 PRK07994 DNA polymerase III su 54.0 55 0.0012 39.4 9.2 100 48-149 117-220 (647)
139 PRK03992 proteasome-activating 53.6 61 0.0013 36.6 9.2 85 49-133 223-331 (389)
140 TIGR00362 DnaA chromosomal rep 53.5 94 0.002 35.3 10.9 90 53-144 202-305 (405)
141 PRK14960 DNA polymerase III su 53.1 80 0.0017 37.9 10.1 97 49-147 117-217 (702)
142 KOG4308 LRR-containing protein 52.9 0.26 5.6E-06 56.8 -10.1 56 584-639 235-301 (478)
143 PRK14949 DNA polymerase III su 52.8 64 0.0014 40.1 9.5 99 48-148 117-219 (944)
144 PF02463 SMC_N: RecF/RecN/SMC 52.8 13 0.00028 38.2 3.4 45 50-94 158-205 (220)
145 PRK14957 DNA polymerase III su 52.4 88 0.0019 36.9 10.4 93 49-143 118-214 (546)
146 PRK06871 DNA polymerase III su 51.7 94 0.002 34.0 9.9 93 49-148 106-202 (325)
147 PRK14970 DNA polymerase III su 51.1 98 0.0021 34.6 10.4 94 49-144 107-204 (367)
148 PRK04195 replication factor C 51.0 1.1E+02 0.0024 35.7 11.1 95 50-148 98-201 (482)
149 PRK06305 DNA polymerase III su 50.1 1.1E+02 0.0023 35.4 10.6 94 49-144 120-217 (451)
150 PRK08451 DNA polymerase III su 48.6 1.2E+02 0.0026 35.7 10.6 98 49-148 116-217 (535)
151 COG2256 MGS1 ATPase related to 48.4 77 0.0017 35.3 8.3 95 46-143 100-206 (436)
152 PRK07399 DNA polymerase III su 47.8 75 0.0016 34.7 8.4 95 49-149 123-221 (314)
153 PRK14951 DNA polymerase III su 46.7 1.4E+02 0.003 35.9 10.9 96 50-147 124-223 (618)
154 PRK14950 DNA polymerase III su 46.5 93 0.002 37.3 9.7 98 49-148 119-220 (585)
155 PTZ00454 26S protease regulato 45.6 1.1E+02 0.0023 34.7 9.5 117 48-168 236-386 (398)
156 PRK00149 dnaA chromosomal repl 45.2 1.1E+02 0.0023 35.4 9.7 123 43-168 205-349 (450)
157 PRK14956 DNA polymerase III su 44.1 1.1E+02 0.0024 35.3 9.3 95 48-144 119-217 (484)
158 PRK08769 DNA polymerase III su 43.7 1.2E+02 0.0027 33.1 9.2 94 49-150 112-209 (319)
159 PRK14955 DNA polymerase III su 42.2 1.1E+02 0.0025 34.5 9.2 96 49-146 126-225 (397)
160 PRK14971 DNA polymerase III su 41.9 2.3E+02 0.0049 34.2 11.9 96 49-146 120-219 (614)
161 smart00365 LRR_SD22 Leucine-ri 41.3 24 0.00051 22.7 1.9 16 605-620 2-17 (26)
162 PRK14962 DNA polymerase III su 40.6 1.1E+02 0.0024 35.4 8.8 101 49-151 116-221 (472)
163 PRK07764 DNA polymerase III su 39.9 2.2E+02 0.0049 35.5 11.7 94 49-144 119-216 (824)
164 PRK14952 DNA polymerase III su 39.9 3E+02 0.0064 32.9 12.3 99 49-149 117-220 (584)
165 TIGR02880 cbbX_cfxQ probable R 39.6 1E+02 0.0022 33.1 7.9 69 51-119 122-209 (284)
166 KOG4308 LRR-containing protein 39.1 0.35 7.6E-06 55.7 -11.8 41 578-618 257-303 (478)
167 PRK09111 DNA polymerase III su 38.4 1.4E+02 0.0029 35.9 9.2 97 50-148 132-232 (598)
168 PF13516 LRR_6: Leucine Rich r 37.0 5.3 0.00011 24.8 -1.5 9 410-418 4-12 (24)
169 PRK12422 chromosomal replicati 37.0 2E+02 0.0043 33.2 10.0 70 51-120 203-286 (445)
170 PTZ00361 26 proteosome regulat 36.9 59 0.0013 37.2 5.7 121 48-168 274-424 (438)
171 PRK06647 DNA polymerase III su 36.3 2.3E+02 0.005 33.7 10.7 99 48-148 117-219 (563)
172 PRK14958 DNA polymerase III su 36.2 2.7E+02 0.0058 32.7 11.1 97 49-147 118-218 (509)
173 PRK14964 DNA polymerase III su 36.1 1.8E+02 0.0039 33.9 9.4 95 49-145 115-213 (491)
174 cd00009 AAA The AAA+ (ATPases 35.9 64 0.0014 29.6 5.1 43 47-89 81-131 (151)
175 PRK14969 DNA polymerase III su 35.3 1.5E+02 0.0032 35.1 8.8 95 49-145 118-216 (527)
176 PRK07133 DNA polymerase III su 35.0 2.8E+02 0.0061 33.9 11.1 96 49-146 117-216 (725)
177 KOG0989 Replication factor C, 34.7 91 0.002 33.5 6.1 96 52-149 131-231 (346)
178 PRK14088 dnaA chromosomal repl 34.4 1.7E+02 0.0037 33.6 9.0 96 45-142 189-298 (440)
179 COG0593 DnaA ATPase involved i 33.1 84 0.0018 35.4 6.0 71 52-122 177-261 (408)
180 COG1474 CDC6 Cdc6-related prot 32.7 3.7E+02 0.008 30.0 11.0 135 12-150 84-239 (366)
181 PRK14954 DNA polymerase III su 32.1 1.7E+02 0.0036 35.3 8.7 93 49-144 126-223 (620)
182 PRK05986 cob(I)alamin adenolsy 30.1 61 0.0013 32.4 3.8 64 39-104 103-174 (191)
183 PRK04132 replication factor C 28.8 3.8E+02 0.0082 33.6 11.0 97 50-148 630-730 (846)
184 TIGR00708 cobA cob(I)alamin ad 28.7 61 0.0013 31.8 3.5 64 39-104 85-156 (173)
185 PF10236 DAP3: Mitochondrial r 27.3 2.9E+02 0.0062 30.1 8.9 47 99-145 258-305 (309)
186 PRK05896 DNA polymerase III su 27.3 2.4E+02 0.0053 33.6 8.7 97 51-149 120-221 (605)
187 PRK07993 DNA polymerase III su 27.1 3.1E+02 0.0068 30.2 9.2 94 49-149 107-204 (334)
188 PRK14953 DNA polymerase III su 27.0 4.8E+02 0.011 30.4 11.1 99 49-149 118-220 (486)
189 PRK07414 cob(I)yrinic acid a,c 26.1 87 0.0019 30.9 4.1 50 39-88 103-158 (178)
190 PRK14948 DNA polymerase III su 25.8 4.4E+02 0.0095 31.8 10.7 99 49-149 120-222 (620)
191 TIGR02881 spore_V_K stage V sp 25.7 2.5E+02 0.0054 29.5 7.9 67 52-120 107-193 (261)
192 KOG2227 Pre-initiation complex 23.8 3.3E+02 0.0071 31.2 8.3 138 15-153 220-376 (529)
193 CHL00181 cbbX CbbX; Provisiona 23.5 3.7E+02 0.008 28.9 8.7 69 52-120 124-211 (287)
194 smart00368 LRR_RI Leucine rich 23.0 65 0.0014 20.9 1.7 14 605-618 2-15 (28)
195 PHA02544 44 clamp loader, smal 22.9 1.9E+02 0.0042 31.3 6.6 67 50-116 100-171 (316)
196 PRK08485 DNA polymerase III su 22.3 8.3E+02 0.018 24.7 10.3 103 12-117 11-138 (206)
197 PRK08058 DNA polymerase III su 21.5 4.5E+02 0.0097 28.9 9.1 69 49-117 109-181 (329)
198 KOG4242 Predicted myosin-I-bin 21.3 2.8E+02 0.006 31.7 7.1 102 340-442 165-278 (553)
199 TIGR01128 holA DNA polymerase 21.2 5.9E+02 0.013 27.1 10.0 96 47-144 43-148 (302)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=6.9e-98 Score=940.65 Aligned_cols=805 Identities=35% Similarity=0.562 Sum_probs=676.8
Q ss_pred hHHHHHHHHHHHhcCCCCcccCCccchHHHHHhhCCCeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCchhhhh
Q 039311 14 LAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKN 93 (909)
Q Consensus 14 ~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~ 93 (909)
...+|+++++++++..+.++.. ...++++|++||+||||||||+.++|+.+.+...|+++|||||||||+++++..
T Consensus 264 ~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~ 339 (1153)
T PLN03210 264 KLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRA 339 (1153)
T ss_pred hHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHh
Confidence 4578999999998555544322 367899999999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHHHHHHhcCCC
Q 039311 94 CGVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPH 173 (909)
Q Consensus 94 ~~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~~ 173 (909)
++++++|+|+.|+++|||+||+++||++..+.+++.+++++||++|+|+|||++++|+.|++++..+|++++++|++.++
T Consensus 340 ~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~ 419 (1153)
T PLN03210 340 HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLD 419 (1153)
T ss_pred cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCcc
Confidence 99999999999999999999999999988888889999999999999999999999999999999999999999999888
Q ss_pred cchhhhhhhcccCCCh-hhhhhheeeeeccCCCCHHHHHHHHHhcCCCcccchhHhhhccccEEeCCeEEehHHHHHHHH
Q 039311 174 VDIQKVLKVSFDGLDD-EEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNKIMMHDLLQEMGR 252 (909)
Q Consensus 174 ~~i~~~L~~sy~~L~~-~~k~cfl~~a~f~~~~~~~~li~~w~~~g~~~~~~i~~L~~~~li~~~~~~~~mhdll~e~~~ 252 (909)
.+|+++|++||++|++ .+|.||+||||||.+++.+++..++.++|+.++.+++.|++++||+...+++.|||++|+||+
T Consensus 420 ~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r 499 (1153)
T PLN03210 420 GKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGK 499 (1153)
T ss_pred HHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHH
Confidence 8999999999999987 589999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCCCCeeeeccchhHHHHhhcCCCCcceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCc-Cccee
Q 039311 253 EIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGE-NVNKV 331 (909)
Q Consensus 253 ~i~~~~~~~~~~~~~rl~~~~~i~~~l~~~~~~~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~-~~~~~ 331 (909)
+|+++++ .+|++++|+|.++++++++..++|++.+++|++|.+...++.+..++|.+|++|++|.++.+.... .....
T Consensus 500 ~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~ 578 (1153)
T PLN03210 500 EIVRAQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRW 578 (1153)
T ss_pred HHHHhhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEeccccccccccee
Confidence 9999997 789999999999999999999999999999999999999999999999999999999998654221 12235
Q ss_pred ecCCCCC--CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccc
Q 039311 332 HNFRGLE--STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATN 409 (909)
Q Consensus 332 ~~~~~l~--~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~ 409 (909)
.++.++. +.+||+|+|.+|+++.+|..+.+.+|+.|+|+++.+..+|.+++.+++|+.|+|+++..++.+|+++.+++
T Consensus 579 ~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~ 658 (1153)
T PLN03210 579 HLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATN 658 (1153)
T ss_pred ecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCc
Confidence 5667776 67899999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred ccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCcc
Q 039311 410 LESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQ 489 (909)
Q Consensus 410 L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~ 489 (909)
|++|++++|..+..+|.+++++++|+.|++++|..++.+|..+++++|+.|++++|..++.+|....+|+.|++++|.+.
T Consensus 659 Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred ccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred ccCcccccCCCCCEEeccCCCCCCcCcccc--------cCCCCCCeeecccccccccccCc-ceeecCccccccCCCCee
Q 039311 490 EFPSSIERLSSLILLNLGNCLRLEGLPSKI--------CKLKSLERLNLAEALKELKAEGI-AIREVPSSIACLKNLGRL 560 (909)
Q Consensus 490 ~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l--------~~L~~L~~L~l~~~l~~L~l~~~-~~~~lp~~i~~l~~L~~L 560 (909)
.+|..+ .+++|+.|.+.++... .++..+ ...++|+.|++ +++ .+..+|.+++.+++|+.|
T Consensus 739 ~lP~~~-~l~~L~~L~l~~~~~~-~l~~~~~~l~~~~~~~~~sL~~L~L---------s~n~~l~~lP~si~~L~~L~~L 807 (1153)
T PLN03210 739 EFPSNL-RLENLDELILCEMKSE-KLWERVQPLTPLMTMLSPSLTRLFL---------SDIPSLVELPSSIQNLHKLEHL 807 (1153)
T ss_pred cccccc-cccccccccccccchh-hccccccccchhhhhccccchheeC---------CCCCCccccChhhhCCCCCCEE
Confidence 999876 6899999999876532 122111 22345555555 554 456789999999999999
Q ss_pred ecCccccccccccccCccCCCCCCCEEecCCCCCC-CcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCC
Q 039311 561 SFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 561 ~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~ 639 (909)
++++ |.++.. +|....+++|+.|+|++|... .+|.. .++|+.|+|++|.++.+|.++..+++|+.|+|++|+
T Consensus 808 ~Ls~--C~~L~~--LP~~~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 808 EIEN--CINLET--LPTGINLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred ECCC--CCCcCe--eCCCCCccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCC
Confidence 9998 776553 454447899999999999765 45543 468999999999999999999999999999999999
Q ss_pred CCcccCCCC---CCcCceecccCcccccccCcch---hcccc------CCCcceeEecccCCCCHHHHHHHHHHHHHHHH
Q 039311 640 RLHSLPELP---CDLSDIEAHCCSSLEALSGLSI---LFTQT------SWNSQFFYFVNCFKLDKNELKEIIKDAQRKMQ 707 (909)
Q Consensus 640 ~L~~lp~l~---~sL~~L~i~~C~~L~~l~~~~~---l~~~~------~~~~~~l~~~~C~~L~~~~~~~~~~~~~~~~~ 707 (909)
+|+.+|..+ ++|+.|++.+|++|+.++.... ..... ......+.|.||++|++.+. .
T Consensus 881 ~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~---l-------- 949 (1153)
T PLN03210 881 NLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL---L-------- 949 (1153)
T ss_pred CcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh---h--------
Confidence 999998644 4667789999999987754221 00000 00112346899999976542 0
Q ss_pred HHHhhHHHHHhhccccCCceEEEcCCCCCCCCccccCCccEEE-EEcCCCCCcCCcccceEEEEEcccCCCCCCCCeeEE
Q 039311 708 LKATAWWEELEKQHCEVPRGMICFPGSELPEWFMFQSMGSSAT-FNLPPDWFSYNFVGFALCAVVGFRDHHDDGGGFQVF 786 (909)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~g~a~c~v~~~~~~~~~~~~~~~~ 786 (909)
+. ......+++||.++|+||.||..|++++ |.+|+.|+...|.||++|+|+++....+....+.+.
T Consensus 950 ----------~~---~~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~ 1016 (1153)
T PLN03210 950 ----------QQ---QSIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRACAVVDSESFFIISVSFDIQ 1016 (1153)
T ss_pred ----------cc---cccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEEEEEecCccccCCCceeEE
Confidence 00 0123468899999999999999999998 999999998889999999999988765545578899
Q ss_pred EEEEEecCCCcEEEEEeeeccccCCCCCCCccCCCeEEEecccccCccccc---ccCCCceEEEEEEEee---CcEEEEe
Q 039311 787 CECKLKTEDGLCRVAVGHLTGWSDGYRGPRYIGSDHVFLGFDFYMFSDGFD---EYYYSDEVFIQFYLED---CCEVTKC 860 (909)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~---~~~v~~c 860 (909)
|.|.|.+..+..+........|. .....+|+++ |+.+.+...-. ....+++|+|+|.+.+ .++||+|
T Consensus 1017 ~~c~~~~~~~~~~~~~~~~~~~~------~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~c 1089 (1153)
T PLN03210 1017 VCCRFIDRLGNHFDSPYQPHVFS------VTKKGSHLVI-FDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGC 1089 (1153)
T ss_pred EEEEEECCCCCccccCCCceeEe------eeccccceEE-ecccccccccccchhccCCceeeEEEEEecCCCCeEEEee
Confidence 99999987765443111111111 1233556654 22222211100 0134677889998876 4699999
Q ss_pred eeEEEEecCCCc
Q 039311 861 GIHLLYAQDFSD 872 (909)
Q Consensus 861 Gv~~~y~~~~~~ 872 (909)
||+++|+.+..+
T Consensus 1090 g~~~~~~~~~~~ 1101 (1153)
T PLN03210 1090 GIRLSEDDSSLN 1101 (1153)
T ss_pred eEEEeccCCCcc
Confidence 999999766543
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4e-58 Score=549.11 Aligned_cols=399 Identities=23% Similarity=0.257 Sum_probs=291.9
Q ss_pred hhhccCChHHHHHHHHHHHhc-CCCCcccCCccchHHHHHhhCCCeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEe
Q 039311 7 ESEKSGGLAHLRQILLSAILD-DGNVSIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITA 85 (909)
Q Consensus 7 ~s~~~~~~~~l~~~ll~~i~~-~~~~~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTT 85 (909)
||+. ++..++|++|+..+.. +......+.++.+..|.+.|++|||+|||||||+..+|+.++.+++...+||||++||
T Consensus 218 VSk~-f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTT 296 (889)
T KOG4658|consen 218 VSKE-FTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTT 296 (889)
T ss_pred Eccc-ccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEe
Confidence 6888 9999999999999874 2223333347889999999999999999999999999999999999888999999999
Q ss_pred CCchhhhh-cCCCcEEECCCCCHHHHHHHHHHhhcCCC-CCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCC-CHHHHH
Q 039311 86 RDKQVLKN-CGVDTIYEVKELFDDDARMLFSRYAFGKN-YPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGR-RIKDWE 162 (909)
Q Consensus 86 R~~~v~~~-~~~~~~y~l~~L~~~es~~LF~~~af~~~-~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~-~~~~W~ 162 (909)
|++.||.. ++++..++++.|..+|||.||+++||... ...+.+.++|++||++|+|+|||++++|+.|++| +..||+
T Consensus 297 Rs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~ 376 (889)
T KOG4658|consen 297 RSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWR 376 (889)
T ss_pred ccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHH
Confidence 99999999 89999999999999999999999999874 4446689999999999999999999999999998 688999
Q ss_pred HHHHHHhcC-----C--CcchhhhhhhcccCCChhhhhhheeeeeccCCC--CHHHHHHHHHhcCC------------Cc
Q 039311 163 STIKKIKRI-----P--HVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFLDGCGF------------SA 221 (909)
Q Consensus 163 ~~l~~L~~~-----~--~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~--~~~~li~~w~~~g~------------~~ 221 (909)
++++.+... + .+.|..+|++|||.||.+.|.||+|||+||+++ +++.++..|+|+|| .|
T Consensus 377 ~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G 456 (889)
T KOG4658|consen 377 RALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVG 456 (889)
T ss_pred HHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcch
Confidence 999988765 2 345899999999999988999999999999999 89999999999998 45
Q ss_pred ccchhHhhhccccEEeC-----CeEEehHHHHHHHHHHhhhcccCCCCCeeeeccchhHHHHhhcCCCCcceeEEEeecC
Q 039311 222 EIGISVLVDKCLMVILN-----NKIMMHDLLQEMGREIVRQESIKDPGKRSRLWHHEDIYNVLTNNTGTEAIEGISLDMS 296 (909)
Q Consensus 222 ~~~i~~L~~~~li~~~~-----~~~~mhdll~e~~~~i~~~~~~~~~~~~~rl~~~~~i~~~l~~~~~~~~v~~i~l~~~ 296 (909)
..++.+|++++|+.... .+|.|||++||||.+++.+...+... .............+......++.+++-..
T Consensus 457 ~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~---~iv~~~~~~~~~~~~~~~~~~rr~s~~~~ 533 (889)
T KOG4658|consen 457 YDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN---QIVSDGVGLSEIPQVKSWNSVRRMSLMNN 533 (889)
T ss_pred HHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc---eEEECCcCccccccccchhheeEEEEecc
Confidence 66899999999999975 67999999999999999955433222 11111000000112222334455544444
Q ss_pred CceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCC-CCC-CCCccEEEeeCC-CCCccCCCC-CCCCeeEEEcCCC
Q 039311 297 KVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFR-GLE-STELRYLQWHGC-PLKSLSSKI-PPENLVSLEMPHS 372 (909)
Q Consensus 297 ~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~-~l~-~~~Lr~L~l~~~-~l~~lp~~~-~~~~L~~L~L~~~ 372 (909)
....+... .+.++|++|-+..|... ....+. .+. ++.||+|++++| .+..+|..+ .+-+|++|+++++
T Consensus 534 ~~~~~~~~----~~~~~L~tLll~~n~~~----l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t 605 (889)
T KOG4658|consen 534 KIEHIAGS----SENPKLRTLLLQRNSDW----LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT 605 (889)
T ss_pred chhhccCC----CCCCccceEEEeecchh----hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC
Confidence 33222211 11224666666544310 000111 122 556666666644 345566655 3556666666666
Q ss_pred CccccccccccCCCCCEEecCCCcCCCcCCCC-Ccccccccccccc
Q 039311 373 SIKQLWKGVQRLVNLKHINLSHSEHLTKIPDL-SLATNLESLNFQG 417 (909)
Q Consensus 373 ~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l-~~l~~L~~L~L~~ 417 (909)
.++.+|.++++|++|.+||+..+..+..+|.+ ..+++|++|.+..
T Consensus 606 ~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 606 GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 66666666666666666666655555555542 2355566555544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.96 E-value=6.5e-29 Score=314.46 Aligned_cols=370 Identities=21% Similarity=0.239 Sum_probs=246.8
Q ss_pred cCCCCCeeeeccchhHHHHhhcCCC--CcceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCC-
Q 039311 260 IKDPGKRSRLWHHEDIYNVLTNNTG--TEAIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRG- 336 (909)
Q Consensus 260 ~~~~~~~~rl~~~~~i~~~l~~~~~--~~~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~- 336 (909)
+.+|+++.+.|...+-+..+...+. ...+..+.+..+.+.. ..+.+|..+++|+.|++++|.+.+. ++..
T Consensus 41 ~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~--~~~~~~~~l~~L~~L~Ls~n~~~~~-----ip~~~ 113 (968)
T PLN00113 41 INDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISG--KISSAIFRLPYIQTINLSNNQLSGP-----IPDDI 113 (968)
T ss_pred CCCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccc--cCChHHhCCCCCCEEECCCCccCCc-----CChHH
Confidence 3456666677865433333332222 2345555544443322 2356788999999999998865421 2222
Q ss_pred C-CCCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcc-ccccccccCCCCCEEecCCCcCCCcCCC-CCcccccccc
Q 039311 337 L-ESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIK-QLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESL 413 (909)
Q Consensus 337 l-~~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L 413 (909)
+ .+.+||+|++++|.+....+...+.+|++|++++|.+. .+|..++.+++|++|++++|.+...+|. ++++++|++|
T Consensus 114 ~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 193 (968)
T PLN00113 114 FTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFL 193 (968)
T ss_pred hccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCee
Confidence 2 36789999999888764333345778899999988886 6778888888999999988887777775 8888889999
Q ss_pred ccccccccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccCCCCCcccCcc---ccCcceeeccccCcc
Q 039311 414 NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSGCSNLMSFPEL---SCNIEELSLDGTAIQ 489 (909)
Q Consensus 414 ~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~~~i~ 489 (909)
++++|.....+|..++.+++|++|++++|.....+|..+ ++++|++|++++|...+.+|.. ..+|+.|++++|.+.
T Consensus 194 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 194 TLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred eccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 998888877888888888888888888877666677666 5888888888888776667654 345778888888776
Q ss_pred -ccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccc---------------ccccccccCccee-ecCcccc
Q 039311 490 -EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE---------------ALKELKAEGIAIR-EVPSSIA 552 (909)
Q Consensus 490 -~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~---------------~l~~L~l~~~~~~-~lp~~i~ 552 (909)
.+|.++.++++|+.|++++|...+.+|..+.++++|+.|++.. +|+.|++++|.+. .+|..++
T Consensus 274 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~ 353 (968)
T PLN00113 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLG 353 (968)
T ss_pred ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHh
Confidence 5777788888888888888877777787778888888887733 3556666666654 5677777
Q ss_pred ccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCC-CcccccCCCCCCcEEECCCCCCe-ecchhhccCCCC
Q 039311 553 CLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFE-RIPESIIQLSHL 630 (909)
Q Consensus 553 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L 630 (909)
.+++|+.|++++|.. .+..+..+..+++|+.|++++|++. .+|..++.+++|+.|++++|+++ .+|..+..+++|
T Consensus 354 ~~~~L~~L~Ls~n~l---~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 430 (968)
T PLN00113 354 KHNNLTVLDLSTNNL---TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430 (968)
T ss_pred CCCCCcEEECCCCee---EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCC
Confidence 777888888776332 2222222334445555555555444 24444455555555555555544 444444444444
Q ss_pred CEEeecCCC
Q 039311 631 FSLGISHCE 639 (909)
Q Consensus 631 ~~L~L~~c~ 639 (909)
+.|++++|.
T Consensus 431 ~~L~Ls~N~ 439 (968)
T PLN00113 431 YFLDISNNN 439 (968)
T ss_pred CEEECcCCc
Confidence 444444443
No 4
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=7.8e-30 Score=276.78 Aligned_cols=211 Identities=24% Similarity=0.396 Sum_probs=170.6
Q ss_pred CChHHHHHHHHHHHhcCC-CC-cccCCccchHHHHHhhCCCeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCch
Q 039311 12 GGLAHLRQILLSAILDDG-NV-SIGCPSIGLNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQ 89 (909)
Q Consensus 12 ~~~~~l~~~ll~~i~~~~-~~-~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~ 89 (909)
....+++++|+.++.... .. ...+..+....+++.|+++|+||||||||+..+|+.+...++.+..|||||||||+++
T Consensus 61 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~ 140 (287)
T PF00931_consen 61 PSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRS 140 (287)
T ss_dssp SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGG
T ss_pred cccccccccccccccccccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccc
Confidence 566889999999997431 12 3456667889999999999999999999999999999998888888999999999999
Q ss_pred hhhhcCC-CcEEECCCCCHHHHHHHHHHhhcCCC-CCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCC-CHHHHHHHHH
Q 039311 90 VLKNCGV-DTIYEVKELFDDDARMLFSRYAFGKN-YPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGR-RIKDWESTIK 166 (909)
Q Consensus 90 v~~~~~~-~~~y~l~~L~~~es~~LF~~~af~~~-~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~-~~~~W~~~l~ 166 (909)
|+..++. ...|+|++|+.+||++||++.|+... ...+...+++++|+++|+|+|||++++|++|+.+ +..+|+++++
T Consensus 141 v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~ 220 (287)
T PF00931_consen 141 VAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALE 220 (287)
T ss_dssp GGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9988865 68999999999999999999998766 4456667899999999999999999999999654 6789999998
Q ss_pred HHhcCC------CcchhhhhhhcccCCChhhhhhheeeeeccCCC--CHHHHHHHHHhcCCCcc
Q 039311 167 KIKRIP------HVDIQKVLKVSFDGLDDEEQNLFLDIASFFKGE--DKDCVIKFLDGCGFSAE 222 (909)
Q Consensus 167 ~L~~~~------~~~i~~~L~~sy~~L~~~~k~cfl~~a~f~~~~--~~~~li~~w~~~g~~~~ 222 (909)
++.... ...+..++.+||+.||++.|.||+|||+||.++ +++.++++|.++||+..
T Consensus 221 ~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 221 ELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp HHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 876543 355999999999999999999999999999997 69999999999998654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=3.3e-27 Score=298.99 Aligned_cols=357 Identities=19% Similarity=0.193 Sum_probs=173.5
Q ss_pred ccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCC-ccCCCC-CCCCeeEEEcCCCCcc-cccccc
Q 039311 306 GSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLK-SLSSKI-PPENLVSLEMPHSSIK-QLWKGV 381 (909)
Q Consensus 306 ~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~i~-~lp~~~ 381 (909)
..|.++++|++|++.+|.+.. ..+..+. +++|++|++++|.+. .+|..+ .+.+|++|++++|.+. .+|..+
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~-----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVG-----KIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred hHHhcCCCCCEEECccCcccc-----cCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH
Confidence 344555555555555443321 1112222 445555555555443 234333 4445555555555444 344445
Q ss_pred ccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccc-cCCcCcE
Q 039311 382 QRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKK 459 (909)
Q Consensus 382 ~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~ 459 (909)
+++++|++|++++|.+.+.+|. ++++++|++|++++|.....+|.+++.+++|++|++++|.....+|..+ ++++|+.
T Consensus 233 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 233 GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 5555555555555544444443 4455555555555544444444445555555555555443333333332 2444444
Q ss_pred EEccCC------------------------CCCcccCcc---ccCcceeeccccCcc-ccCcccccCCCCCEEeccCCCC
Q 039311 460 LILSGC------------------------SNLMSFPEL---SCNIEELSLDGTAIQ-EFPSSIERLSSLILLNLGNCLR 511 (909)
Q Consensus 460 L~Ls~c------------------------~~l~~lp~~---~~~L~~L~L~~~~i~-~lp~~i~~l~~L~~L~L~~c~~ 511 (909)
|++++| ...+.+|.. ..+|+.|++++|.+. .+|.++..+++|+.|++++|..
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l 392 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEe
Confidence 444444 433333332 123444444444443 3444444444444444444444
Q ss_pred CCcCcccccCCCCCCeeeccc---------------ccccccccCcceee-cCccccccCCCCeeecCccccc-------
Q 039311 512 LEGLPSKICKLKSLERLNLAE---------------ALKELKAEGIAIRE-VPSSIACLKNLGRLSFESFMCH------- 568 (909)
Q Consensus 512 l~~lp~~l~~L~~L~~L~l~~---------------~l~~L~l~~~~~~~-lp~~i~~l~~L~~L~l~~~~~~------- 568 (909)
.+.+|..++.+++|+.|++.. +++.+++++|.+.. +|..+..+++|+.|++++|...
T Consensus 393 ~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred cccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc
Confidence 444455555555555555422 23334444443332 2333344445555555442111
Q ss_pred -------------cccccccCccCCCCCCCEEecCCCCCC-CcccccCCCCCCcEEECCCCCCe-ecchhhccCCCCCEE
Q 039311 569 -------------EQMGLLLPISFGLTSLTYLRLTDCGII-ELPECLGQLSSRSILLLEKNNFE-RIPESIIQLSHLFSL 633 (909)
Q Consensus 569 -------------~~~~~~~~~~~~l~~L~~L~Ls~~~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i~~l~~L~~L 633 (909)
.+.+..+..+..+++|+.|+|++|.+. .+|..++++++|+.|+|++|.++ .+|..+..+++|+.|
T Consensus 473 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 552 (968)
T PLN00113 473 GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552 (968)
T ss_pred ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEE
Confidence 011111112334555666666666555 35666666666666777666666 566666667777777
Q ss_pred eecCCCCCcccCCC---CCCcCceecccCcccccccC
Q 039311 634 GISHCERLHSLPEL---PCDLSDIEAHCCSSLEALSG 667 (909)
Q Consensus 634 ~L~~c~~L~~lp~l---~~sL~~L~i~~C~~L~~l~~ 667 (909)
+|++|+....+|.. ..+|+.|++++|+-...+|.
T Consensus 553 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 77776665566642 34567777777766555554
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=5.5e-26 Score=245.58 Aligned_cols=331 Identities=21% Similarity=0.243 Sum_probs=212.0
Q ss_pred eeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCC--ccCCCC-CCCC
Q 039311 288 IEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLK--SLSSKI-PPEN 363 (909)
Q Consensus 288 v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~--~lp~~~-~~~~ 363 (909)
++.+.++...+..+ ++.++.+.+|.+|.+..|.+... ...+. ++.||.+.+..|.++ .+|..+ .++.
T Consensus 34 ~~WLkLnrt~L~~v---PeEL~~lqkLEHLs~~HN~L~~v------hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQV---PEELSRLQKLEHLSMAHNQLISV------HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred eeEEEechhhhhhC---hHHHHHHhhhhhhhhhhhhhHhh------hhhhccchhhHHHhhhccccccCCCCchhccccc
Confidence 34444444444333 24455566666666665543221 22223 566666666666653 455444 6667
Q ss_pred eeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEecccc
Q 039311 364 LVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKH 441 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~ 441 (909)
|..|||++|.+++.|.++..-+++-+|+||+|++ ..+|. +.+++.|-.|+|++| .+..+|+.+..|.+|++|.|++
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~I-etIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNI-ETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCcc-ccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCC
Confidence 7777777777777777666666777777776653 33443 556666667777664 3566666666777777777766
Q ss_pred ccC----ccccCccccCCcCcEEEccCCCC-CcccCcc---ccCcceeeccccCccccCcccccCCCCCEEeccCCCCCC
Q 039311 442 CRS----LTSLSTSIHLGSLKKLILSGCSN-LMSFPEL---SCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLE 513 (909)
Q Consensus 442 c~~----l~~lp~~~~l~~L~~L~Ls~c~~-l~~lp~~---~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~ 513 (909)
|.. ++.+| .+++|++|.+++... +..+|.. +.||..++++.|.+..+|..+-++++|+.|+|++|+. +
T Consensus 183 NPL~hfQLrQLP---smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~i-t 258 (1255)
T KOG0444|consen 183 NPLNHFQLRQLP---SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKI-T 258 (1255)
T ss_pred ChhhHHHHhcCc---cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCce-e
Confidence 542 22222 356666666665422 2334432 3355566666666666666666666666666666532 2
Q ss_pred cCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccC-ccCCCCCCCEEecCCC
Q 039311 514 GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLP-ISFGLTSLTYLRLTDC 592 (909)
Q Consensus 514 ~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~l~~L~~L~Ls~~ 592 (909)
.+....+...+ ++.|.++.|.++.+|..+.++++|+.|.+.+| .+.-..+| .++.+..|+.+...+|
T Consensus 259 eL~~~~~~W~~---------lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N---kL~FeGiPSGIGKL~~Levf~aanN 326 (1255)
T KOG0444|consen 259 ELNMTEGEWEN---------LETLNLSRNQLTVLPDAVCKLTKLTKLYANNN---KLTFEGIPSGIGKLIQLEVFHAANN 326 (1255)
T ss_pred eeeccHHHHhh---------hhhhccccchhccchHHHhhhHHHHHHHhccC---cccccCCccchhhhhhhHHHHhhcc
Confidence 23333333344 44445577788889999999999999888763 23222334 4777889999999999
Q ss_pred CCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 593 GIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 593 ~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
.+.-+|++++.++.|+.|.|+.|++.++|+.|.-|+.|+.|++..+++|.--|
T Consensus 327 ~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 327 KLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 88888999999999999999999999999999999999999999998887554
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=5.9e-22 Score=251.37 Aligned_cols=313 Identities=26% Similarity=0.369 Sum_probs=257.7
Q ss_pred cccCC-CCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCC-Ccccccccccc
Q 039311 307 SFTNM-HKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHS-SIKQLWKGVQR 383 (909)
Q Consensus 307 ~f~~~-~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~-~i~~lp~~~~~ 383 (909)
.|..+ .+||.|.+.++.... ++..+.+.+|+.|++.++.++.+|..+ .+.+|++|+|+++ .++.+|. +..
T Consensus 583 ~~~~lp~~Lr~L~~~~~~l~~------lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~ 655 (1153)
T PLN03210 583 GFDYLPPKLRLLRWDKYPLRC------MPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSM 655 (1153)
T ss_pred chhhcCcccEEEEecCCCCCC------CCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-ccc
Confidence 34444 579999998765433 334445789999999999999999877 7899999999986 4777874 788
Q ss_pred CCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEc
Q 039311 384 LVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLIL 462 (909)
Q Consensus 384 L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~L 462 (909)
+++|++|+|++|..+..+|. +..+++|+.|++++|..+..+|..+ ++++|++|++++|..+..+|.. .++|+.|++
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L 732 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDL 732 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeec
Confidence 99999999999998988886 8999999999999999999999877 7999999999999998888753 578999999
Q ss_pred cCCCCCcccCcc--ccCcceeeccccCccccCcc--------cccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccc
Q 039311 463 SGCSNLMSFPEL--SCNIEELSLDGTAIQEFPSS--------IERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE 532 (909)
Q Consensus 463 s~c~~l~~lp~~--~~~L~~L~L~~~~i~~lp~~--------i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~ 532 (909)
+++. +..+|.. +.+|++|.+.++....++.. ....++|+.|+|++|..+..+|..++++++|+.|++..
T Consensus 733 ~~n~-i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~ 811 (1153)
T PLN03210 733 DETA-IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN 811 (1153)
T ss_pred CCCc-cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence 9865 5677764 46788888877543333222 23357899999999999999999999999999999864
Q ss_pred ccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEEC
Q 039311 533 ALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLL 612 (909)
Q Consensus 533 ~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L 612 (909)
| ..++.+|..+ .+++|+.|++++ |..+.. +|. ..++|+.|+|++|.+.++|.++..+++|+.|++
T Consensus 812 C--------~~L~~LP~~~-~L~sL~~L~Ls~--c~~L~~--~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L 876 (1153)
T PLN03210 812 C--------INLETLPTGI-NLESLESLDLSG--CSRLRT--FPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDM 876 (1153)
T ss_pred C--------CCcCeeCCCC-CccccCEEECCC--CCcccc--ccc--cccccCEeECCCCCCccChHHHhcCCCCCEEEC
Confidence 4 2356677766 789999999999 765532 222 247899999999999999999999999999999
Q ss_pred CCC-CCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 613 EKN-NFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 613 ~~n-~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
++| ++..+|..+..+++|+.|++++|..|+.++
T Consensus 877 ~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 877 NGCNNLQRVSLNISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred CCCCCcCccCcccccccCCCeeecCCCccccccc
Confidence 995 677999999999999999999999998654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.88 E-value=5.1e-25 Score=238.14 Aligned_cols=341 Identities=22% Similarity=0.337 Sum_probs=222.3
Q ss_pred CCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCE
Q 039311 312 HKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKH 389 (909)
Q Consensus 312 ~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~ 389 (909)
+-.|-.++++|.+.+ ..++.+.. ++.+++|.+....+..+|... .+.+|+.|.+.+|++.++-.++..|+.||.
T Consensus 7 pFVrGvDfsgNDFsg----~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSG----DRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCC----CcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHH
Confidence 334555666554432 23444444 677777777777777777766 667777777777777777767777777777
Q ss_pred EecCCCcCC--CcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccCC
Q 039311 390 INLSHSEHL--TKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGC 465 (909)
Q Consensus 390 L~Ls~~~~l--~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c 465 (909)
+++++|+.- +.++++-.+..|..|+|+.|+ +.++|..+.+-+++-.|+|++ +++..+|... +++.|-.|+||+
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~- 159 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSN- 159 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhcccc-
Confidence 777766532 233346677777777777753 566777777777777777777 4466666654 577777777776
Q ss_pred CCCcccCcc---ccCcceeeccccCccccC-cccccCCCCCEEeccCCCC-CCcCcccccCCCCCCeeeccccccccccc
Q 039311 466 SNLMSFPEL---SCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLR-LEGLPSKICKLKSLERLNLAEALKELKAE 540 (909)
Q Consensus 466 ~~l~~lp~~---~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~-l~~lp~~l~~L~~L~~L~l~~~l~~L~l~ 540 (909)
+.+..+|.- +.+|+.|.|++|.+..+. ..+..+++|+.|.+++... +..+|.++..|.+|..+++ +
T Consensus 160 NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl---------S 230 (1255)
T KOG0444|consen 160 NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL---------S 230 (1255)
T ss_pred chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc---------c
Confidence 345555543 335667777776554110 1122455666666665433 3446666666666666655 4
Q ss_pred CcceeecCccccccCCCCeeecCccccccc-------------------cccccCccCCCCCCCEEecCCCCCC--Cccc
Q 039311 541 GIAIREVPSSIACLKNLGRLSFESFMCHEQ-------------------MGLLLPISFGLTSLTYLRLTDCGII--ELPE 599 (909)
Q Consensus 541 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~-------------------~~~~~~~~~~l~~L~~L~Ls~~~l~--~lp~ 599 (909)
.|.+..+|..+-++++|+.|+|++|....+ ....+..++.++.|+.|.+.+|++. .+|.
T Consensus 231 ~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS 310 (1255)
T KOG0444|consen 231 ENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS 310 (1255)
T ss_pred ccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCcc
Confidence 444555555555555555555555332221 1112223566778888888888776 5888
Q ss_pred ccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCC---CCCCcCceecccCcccccccCcc
Q 039311 600 CLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE---LPCDLSDIEAHCCSSLEALSGLS 669 (909)
Q Consensus 600 ~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~---l~~sL~~L~i~~C~~L~~l~~~~ 669 (909)
.++.|..|+.+...+|++.-+|+++..|++|+.|.|++ +.|..+|+ +.+.|+.|+++..|+|.--|-+.
T Consensus 311 GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~ 382 (1255)
T KOG0444|consen 311 GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPN 382 (1255)
T ss_pred chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhcCCcceeeccCCcCccCCCCcc
Confidence 88888888888888888888888888899999999986 46778887 67789999999999997655543
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=4.5e-23 Score=222.44 Aligned_cols=328 Identities=22% Similarity=0.209 Sum_probs=198.2
Q ss_pred EeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC--CCCCeeEEE
Q 039311 292 SLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI--PPENLVSLE 368 (909)
Q Consensus 292 ~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~ 368 (909)
.+|+++.+--++....|.++.+|+.+++..|.+...+ .... ..+|+.|++.+|.+.++.+.- .+..|+.||
T Consensus 82 ~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP------~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 82 TLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIP------RFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred eeeccccccccCcHHHHhcCCcceeeeeccchhhhcc------cccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 3555555555555666677777777777666543221 1112 345666666666665554433 345666666
Q ss_pred cCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccccccCcc
Q 039311 369 MPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLT 446 (909)
Q Consensus 369 L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~ 446 (909)
|+.|.|.++|. .+..-.++++|+|++|++.+.-.+ |..+.+|.+|.|+.|....--+.++..|++|+.|+|..|. ++
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~-ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNR-IR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccc-ee
Confidence 66666666663 344445666666666665444333 6666666666666655443333455556677777666643 33
Q ss_pred ccCcc-c-cCCcCcEEEccCCCCCcccCc----cccCcceeeccccCccccC-cccccCCCCCEEeccCCCCCCcCcccc
Q 039311 447 SLSTS-I-HLGSLKKLILSGCSNLMSFPE----LSCNIEELSLDGTAIQEFP-SSIERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 447 ~lp~~-~-~l~~L~~L~Ls~c~~l~~lp~----~~~~L~~L~L~~~~i~~lp-~~i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
..... + ++++|+.|.+..|. +..+.+ .+.+|++|+|+.|++..+. .|+-+|+.|+.|++++|.....-++..
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~W 313 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSW 313 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchh
Confidence 33221 1 46666666666542 222222 2346677777777777664 346667777777777776655555556
Q ss_pred cCCCCCCeeecccccccccccCcceeecCc-cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCC---
Q 039311 520 CKLKSLERLNLAEALKELKAEGIAIREVPS-SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGII--- 595 (909)
Q Consensus 520 ~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~--- 595 (909)
...++|+.|++ +.|.++.+++ ++..+..|+.|.|++|....+. -..+.++.+|++|+|++|.+.
T Consensus 314 sftqkL~~LdL---------s~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~---e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 314 SFTQKLKELDL---------SSNRITRLDEGSFRVLSQLEELNLSHNSIDHLA---EGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhcccceeEec---------cccccccCChhHHHHHHHhhhhcccccchHHHH---hhHHHHhhhhhhhcCcCCeEEEEE
Confidence 66666666665 5566776665 4667777888887774433222 223456778888888888776
Q ss_pred -CcccccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCC
Q 039311 596 -ELPECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCE 639 (909)
Q Consensus 596 -~lp~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 639 (909)
+-...+..+++|+.|.|.+|++..+|. .+..++.|+.|+|.++.
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCc
Confidence 233456668888888888888887775 56778888888888764
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=6.1e-24 Score=220.04 Aligned_cols=298 Identities=24% Similarity=0.267 Sum_probs=207.2
Q ss_pred CCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
..+|+.|+.+.|.++.+|..+ .+..|..|+..+|++..+|.++..+.+|..+++.+|+.....|+.-.+..|++|+...
T Consensus 113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~ 192 (565)
T KOG0472|consen 113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS 192 (565)
T ss_pred hhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch
Confidence 567788888888888888777 6778888888888888888888888888888888888766666655588888888776
Q ss_pred ccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc----cccCcceeeccccCccccCc
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE----LSCNIEELSLDGTAIQEFPS 493 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~----~~~~L~~L~L~~~~i~~lp~ 493 (909)
| .++.+|+.++.+.+|..|++.. +++..+|...++..|..|.+.. +.++.+|. .+..+..|++..|.++++|.
T Consensus 193 N-~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~-N~i~~lpae~~~~L~~l~vLDLRdNklke~Pd 269 (565)
T KOG0472|consen 193 N-LLETLPPELGGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGE-NQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPD 269 (565)
T ss_pred h-hhhcCChhhcchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcc-cHHHhhHHHHhcccccceeeeccccccccCch
Confidence 3 5778899999999999999988 4577788655677777777665 33444443 23456778888888888888
Q ss_pred ccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeeccc-----------------------------------------
Q 039311 494 SIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAE----------------------------------------- 532 (909)
Q Consensus 494 ~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~----------------------------------------- 532 (909)
.+..+++|++|++++| .+..+|.++|++ .|+.|-+-+
T Consensus 270 e~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred HHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 8888888888888876 456677778887 777776610
Q ss_pred ---------------cccccc--------------------------ccCcceeecCccccccCCCCeeecCcccccccc
Q 039311 533 ---------------ALKELK--------------------------AEGIAIREVPSSIACLKNLGRLSFESFMCHEQM 571 (909)
Q Consensus 533 ---------------~l~~L~--------------------------l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~ 571 (909)
+.+.|+ ++.|.+.++|..+..++.+.+.-+.. ++..
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls---nn~i 424 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS---NNKI 424 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh---cCcc
Confidence 122222 33333333333333333332221111 2344
Q ss_pred ccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccC
Q 039311 572 GLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLP 645 (909)
Q Consensus 572 ~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp 645 (909)
++....++.+++|..|+|++|-+.++|..++.+-.|+.|+++.|+|..+|..+..+..|+.+-.++ ..+.+++
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~-nqi~~vd 497 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASN-NQIGSVD 497 (565)
T ss_pred ccchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcc-ccccccC
Confidence 445555677899999999999999999999999999999999998888886554444343333332 3455554
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=1.4e-24 Score=224.73 Aligned_cols=321 Identities=24% Similarity=0.354 Sum_probs=223.0
Q ss_pred ccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCcccccccccc
Q 039311 306 GSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQR 383 (909)
Q Consensus 306 ~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~ 383 (909)
....++..|.+|.+.+|..... +..+. +..+..|+.+.|.+..+|..+ .+..|+.|+.++|.+.++|++++.
T Consensus 62 ~dl~nL~~l~vl~~~~n~l~~l------p~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~ 135 (565)
T KOG0472|consen 62 EDLKNLACLTVLNVHDNKLSQL------PAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGR 135 (565)
T ss_pred HhhhcccceeEEEeccchhhhC------CHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHH
Confidence 3445666667777776553322 22222 455666777777777777666 666777777777777777777777
Q ss_pred CCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEc
Q 039311 384 LVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLIL 462 (909)
Q Consensus 384 L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~L 462 (909)
+..|..++..+|++.+.++++..+..|..|++.+|.. ..+|+..-.++.|++||... +.++.+|..+ ++.+|+.|++
T Consensus 136 ~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 136 LLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDCNS-NLLETLPPELGGLESLELLYL 213 (565)
T ss_pred HhhhhhhhccccccccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhhhHHHHh
Confidence 7777777777777666666677777777777777543 34444444477777777766 4577777776 4778888887
Q ss_pred cCCCCCcccCcccc--CcceeeccccCccccCcccc-cCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccc
Q 039311 463 SGCSNLMSFPELSC--NIEELSLDGTAIQEFPSSIE-RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKA 539 (909)
Q Consensus 463 s~c~~l~~lp~~~~--~L~~L~L~~~~i~~lp~~i~-~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l 539 (909)
.. +++..+|++.+ .|++|+++.|.|+.+|...+ ++.+|..|+|++| .+++.|.++.-+.+|+.|++
T Consensus 214 ~~-Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDl--------- 282 (565)
T KOG0472|consen 214 RR-NKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDL--------- 282 (565)
T ss_pred hh-cccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcc---------
Confidence 77 45566776544 47788888888888887765 7888888888887 56778888888887777776
Q ss_pred cCcceeecCccccccCCCCeeecCccccccccc--------------------------------------cccCccCCC
Q 039311 540 EGIAIREVPSSIACLKNLGRLSFESFMCHEQMG--------------------------------------LLLPISFGL 581 (909)
Q Consensus 540 ~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~--------------------------------------~~~~~~~~l 581 (909)
++|.+..+|.+++++ .|+.|-+.||+...+-. +..+....+
T Consensus 283 SNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~ 361 (565)
T KOG0472|consen 283 SNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI 361 (565)
T ss_pred cCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence 677889999999999 89999888865331100 000111112
Q ss_pred CCC--------------------------CEEecCCCCCCCcc------------------------cccCCCCCCcEEE
Q 039311 582 TSL--------------------------TYLRLTDCGIIELP------------------------ECLGQLSSRSILL 611 (909)
Q Consensus 582 ~~L--------------------------~~L~Ls~~~l~~lp------------------------~~l~~l~~L~~L~ 611 (909)
.+. +..+++.|++.++| ..+..+++|..|+
T Consensus 362 i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~ 441 (565)
T KOG0472|consen 362 ITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLD 441 (565)
T ss_pred hhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeee
Confidence 233 34444444444333 2445789999999
Q ss_pred CCCCCCeecchhhccCCCCCEEeecCCCCCcccCCC
Q 039311 612 LEKNNFERIPESIIQLSHLFSLGISHCERLHSLPEL 647 (909)
Q Consensus 612 L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~l 647 (909)
|++|-+..+|..++.+..|+.|+|+++ +.+.+|+.
T Consensus 442 L~NN~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~ 476 (565)
T KOG0472|consen 442 LSNNLLNDLPEEMGSLVRLQTLNLSFN-RFRMLPEC 476 (565)
T ss_pred cccchhhhcchhhhhhhhhheeccccc-ccccchHH
Confidence 999999999999999999999999997 67778764
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.84 E-value=9.3e-22 Score=212.39 Aligned_cols=352 Identities=20% Similarity=0.154 Sum_probs=267.7
Q ss_pred EEeecCCceEEeeCcccccCC--CCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCCC-CCCeeEE
Q 039311 291 ISLDMSKVKEIHLNAGSFTNM--HKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIP-PENLVSL 367 (909)
Q Consensus 291 i~l~~~~~~~~~~~~~~f~~~--~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~~-~~~L~~L 367 (909)
-.+|.++.+--.++..++.+. ..-+.|++++|.+... ....-..+++|+.+.+..|.++.+|.... ..+|+.|
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~i----d~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L 130 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHI----DFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKL 130 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccC----cHHHHhcCCcceeeeeccchhhhcccccccccceeEE
Confidence 345555443333333333333 2345699998876432 22222237899999999999999999884 4689999
Q ss_pred EcCCCCccccc-cccccCCCCCEEecCCCcCCCcC-CCCCccccccccccccccccceecccccCCCcccEeccccccCc
Q 039311 368 EMPHSSIKQLW-KGVQRLVNLKHINLSHSEHLTKI-PDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSL 445 (909)
Q Consensus 368 ~L~~~~i~~lp-~~~~~L~~L~~L~Ls~~~~l~~~-p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l 445 (909)
+|.+|.|.++. ++++-++-|++||||.|.+.... |.+..-.++++|+|++|.+..---..+..+.+|.+|.|+.|+ +
T Consensus 131 ~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-i 209 (873)
T KOG4194|consen 131 DLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-I 209 (873)
T ss_pred eeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-c
Confidence 99999999886 56888999999999998754432 248888999999999998776666788899999999999955 7
Q ss_pred cccCccc--cCCcCcEEEccCCCCCc---ccCccccCcceeeccccCccccCcc-cccCCCCCEEeccCCCCCCcCcccc
Q 039311 446 TSLSTSI--HLGSLKKLILSGCSNLM---SFPELSCNIEELSLDGTAIQEFPSS-IERLSSLILLNLGNCLRLEGLPSKI 519 (909)
Q Consensus 446 ~~lp~~~--~l~~L~~L~Ls~c~~l~---~lp~~~~~L~~L~L~~~~i~~lp~~-i~~l~~L~~L~L~~c~~l~~lp~~l 519 (909)
+.+|... ++++|+.|+|..|..-. .--..++.|+.|.+..|.|..+... |-.+.++++|+|..|.....-..++
T Consensus 210 ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~l 289 (873)
T KOG4194|consen 210 TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWL 289 (873)
T ss_pred cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccc
Confidence 7777655 49999999998864211 1124567889999999999988765 6779999999999987666666678
Q ss_pred cCCCCCCeeecccccccccccCcceeec-CccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcc
Q 039311 520 CKLKSLERLNLAEALKELKAEGIAIREV-PSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELP 598 (909)
Q Consensus 520 ~~L~~L~~L~l~~~l~~L~l~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp 598 (909)
.+|++|+.|++ +.|.|..+ ++++..+++|+.|+|+.|..+ .....++..+..|++|.|++|.+..+.
T Consensus 290 fgLt~L~~L~l---------S~NaI~rih~d~WsftqkL~~LdLs~N~i~---~l~~~sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 290 FGLTSLEQLDL---------SYNAIQRIHIDSWSFTQKLKELDLSSNRIT---RLDEGSFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred cccchhhhhcc---------chhhhheeecchhhhcccceeEeccccccc---cCChhHHHHHHHhhhhcccccchHHHH
Confidence 88998888887 56677765 456788899999999985443 334445667899999999999998654
Q ss_pred -cccCCCCCCcEEECCCCCCe-ecc---hhhccCCCCCEEeecCCCCCcccCC----CCCCcCceecccCc
Q 039311 599 -ECLGQLSSRSILLLEKNNFE-RIP---ESIIQLSHLFSLGISHCERLHSLPE----LPCDLSDIEAHCCS 660 (909)
Q Consensus 599 -~~l~~l~~L~~L~L~~n~l~-~lp---~~i~~l~~L~~L~L~~c~~L~~lp~----l~~sL~~L~i~~C~ 660 (909)
..+.++++|+.|+|++|.+. .+- ..+..+++|+.|.+-++ ++++||. -+.+|+.|++.+.+
T Consensus 358 e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 358 EGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred hhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCCCc
Confidence 46788999999999999987 333 24567999999999994 7999985 45578888886653
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.8e-21 Score=221.33 Aligned_cols=341 Identities=20% Similarity=0.226 Sum_probs=211.6
Q ss_pred ccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCC
Q 039311 308 FTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLV 385 (909)
Q Consensus 308 f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~ 385 (909)
..+.-+|+.|++++|+....+. .+. ..+|+.|.++.|-+.+.|... .+++|++|.|.+|.+..+|.++..++
T Consensus 41 ~~~~v~L~~l~lsnn~~~~fp~------~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lk 114 (1081)
T KOG0618|consen 41 VEKRVKLKSLDLSNNQISSFPI------QITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELK 114 (1081)
T ss_pred hhheeeeEEeeccccccccCCc------hhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhh
Confidence 3344458888988887544332 233 678888899988888888766 77889999999999999998898999
Q ss_pred CCCEEecCCCcCCCcCCCCCccccccccccccc-------------------cccceecccccCCCcccEeccccccCc-
Q 039311 386 NLKHINLSHSEHLTKIPDLSLATNLESLNFQGC-------------------TCLLETHSSIQYLNKLVVLNLKHCRSL- 445 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c-------------------~~l~~~p~~i~~L~~L~~L~L~~c~~l- 445 (909)
+|++|++++|.+...++-+..+..++.+..++| .....++..+..+++ .|+|++|...
T Consensus 115 nl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~ 192 (1081)
T KOG0618|consen 115 NLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV 192 (1081)
T ss_pred cccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh
Confidence 999999998876554444555555555555544 333444445555554 4666654322
Q ss_pred ---------cccCcc--------ccCCcCcEEEccCCCCCcccCc-cccCcceeeccccCccccCcccccCCCCCEEecc
Q 039311 446 ---------TSLSTS--------IHLGSLKKLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPSSIERLSSLILLNLG 507 (909)
Q Consensus 446 ---------~~lp~~--------~~l~~L~~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~ 507 (909)
+.+--. +..++|+.|..+.|......+. ...+|++++++.+.+..+|+|++.+.+|+.|...
T Consensus 193 ~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n 272 (1081)
T KOG0618|consen 193 LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN 272 (1081)
T ss_pred hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence 221110 1345677777777776655443 3457999999999999999999999999999998
Q ss_pred CCCCCCcCcccccCCCCCCeeec--------------ccccccccccCcceeecCccc----------------------
Q 039311 508 NCLRLEGLPSKICKLKSLERLNL--------------AEALKELKAEGIAIREVPSSI---------------------- 551 (909)
Q Consensus 508 ~c~~l~~lp~~l~~L~~L~~L~l--------------~~~l~~L~l~~~~~~~lp~~i---------------------- 551 (909)
+|.. ..+|..+..+.+|+.|.+ ..+++.|++..|.+..+|..+
T Consensus 273 ~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 273 HNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred chhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 8754 555555555555554444 112333333333333333311
Q ss_pred ----cccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccc-cCCCCCCcEEECCCCCCeecchhh--
Q 039311 552 ----ACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPEC-LGQLSSRSILLLEKNNFERIPESI-- 624 (909)
Q Consensus 552 ----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~-l~~l~~L~~L~L~~n~l~~lp~~i-- 624 (909)
..++.|+.|.+.+ +.+.+...|.+.++.+|+.|+|++|.+.++|.. +.+++.|+.|+|+||+++.+|..+
T Consensus 352 ~~~e~~~~~Lq~Lylan---N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~ 428 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLAN---NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVAN 428 (1081)
T ss_pred cccchhhHHHHHHHHhc---CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHh
Confidence 1112233333333 223334455566667777777777777766643 456666666677766666665544
Q ss_pred --------------------ccCCCCCEEeecCCCCCc--ccCC-CC-CCcCceecccCcc
Q 039311 625 --------------------IQLSHLFSLGISHCERLH--SLPE-LP-CDLSDIEAHCCSS 661 (909)
Q Consensus 625 --------------------~~l~~L~~L~L~~c~~L~--~lp~-l~-~sL~~L~i~~C~~ 661 (909)
.+++.|+.+|++.| .|+ .+|+ .| ++|++|++.+.+.
T Consensus 429 ~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N-~L~~~~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCN-NLSEVTLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhHHHhhcCCceeechhhhhcCcceEEecccc-hhhhhhhhhhCCCcccceeeccCCcc
Confidence 45566666666643 343 2333 45 6777777777664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=2.3e-17 Score=194.77 Aligned_cols=257 Identities=22% Similarity=0.245 Sum_probs=180.2
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCL 421 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l 421 (909)
-..|+++++.++++|..+. .+|+.|++.+|+++.+|.. +++|++|++++|.+. .+|.+ .++|+.|++++|. +
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~l--p~sL~~L~Ls~N~-L 274 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVL--PPGLLELSIFSNP-L 274 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCc--ccccceeeccCCc-h
Confidence 4467777778888887664 3788888888888888753 567888888887544 45543 4678888888765 3
Q ss_pred ceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCC
Q 039311 422 LETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSL 501 (909)
Q Consensus 422 ~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L 501 (909)
..+|.. ..+|+.|++++| .++.+|. .+++|+.|++++| .+..+|..+.+|+.|++++|.+..+|.. ..+|
T Consensus 275 ~~Lp~l---p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~L~~LP~l---p~~L 344 (788)
T PRK15387 275 THLPAL---PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPTL---PSGL 344 (788)
T ss_pred hhhhhc---hhhcCEEECcCC-ccccccc--cccccceeECCCC-ccccCCCCcccccccccccCcccccccc---cccc
Confidence 445542 256778888885 4667765 3577888888886 4556777777788888888888888752 2578
Q ss_pred CEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCC
Q 039311 502 ILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGL 581 (909)
Q Consensus 502 ~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l 581 (909)
+.|+|++|. +..+|... ++|+.|+ +++|.+..+|.. ..+|+.|++++|.... +|. ..
T Consensus 345 q~LdLS~N~-Ls~LP~lp---~~L~~L~---------Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~-----LP~--l~ 401 (788)
T PRK15387 345 QELSVSDNQ-LASLPTLP---SELYKLW---------AYNNRLTSLPAL---PSGLKELIVSGNRLTS-----LPV--LP 401 (788)
T ss_pred ceEecCCCc-cCCCCCCC---cccceeh---------hhccccccCccc---ccccceEEecCCcccC-----CCC--cc
Confidence 888888874 34555422 2344443 455666667653 3568888888743221 222 13
Q ss_pred CCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCc
Q 039311 582 TSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLH 642 (909)
Q Consensus 582 ~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~ 642 (909)
++|+.|++++|.+..+|.. ..+|+.|++++|+++.+|..+..+++|+.|+|++|+.-.
T Consensus 402 s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~ 459 (788)
T PRK15387 402 SELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE 459 (788)
T ss_pred cCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCc
Confidence 6789999999998888764 346788999999999999989999999999999986443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.72 E-value=1.9e-19 Score=204.93 Aligned_cols=339 Identities=23% Similarity=0.227 Sum_probs=178.2
Q ss_pred ceeEEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCC-CCCCee
Q 039311 287 AIEGISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKI-PPENLV 365 (909)
Q Consensus 287 ~v~~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~-~~~~L~ 365 (909)
.+.-.++|+++.....+ +.....+.+|+.|.+..|.+...+. ....+.+|++|.+.+|.+..+|..+ .+++|+
T Consensus 44 ~v~L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i~~vp~-----s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~ 117 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYIRSVPS-----SCSNMRNLQYLNLKNNRLQSLPASISELKNLQ 117 (1081)
T ss_pred eeeeEEeeccccccccC-CchhhhHHHHhhcccchhhHhhCch-----hhhhhhcchhheeccchhhcCchhHHhhhccc
Confidence 34445666666533332 3455677788888888776543321 1122778888888888888888887 778888
Q ss_pred EEEcCCCCccccccccccCCCCCEEecCCC-------------------cCCCcCCC-CCcccccccccccccccc----
Q 039311 366 SLEMPHSSIKQLWKGVQRLVNLKHINLSHS-------------------EHLTKIPD-LSLATNLESLNFQGCTCL---- 421 (909)
Q Consensus 366 ~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~-------------------~~l~~~p~-l~~l~~L~~L~L~~c~~l---- 421 (909)
+|+++.|.+..+|..+..+..+..+..++| ...+.++. +..+.+ .|+|++|...
T Consensus 118 ~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dl 195 (1081)
T KOG0618|consen 118 YLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDL 195 (1081)
T ss_pred ccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhh
Confidence 888888888777654444433333333333 22222221 222222 2444444322
Q ss_pred ------ceec-------ccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCcc---ccCcceeeccc
Q 039311 422 ------LETH-------SSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPEL---SCNIEELSLDG 485 (909)
Q Consensus 422 ------~~~p-------~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~---~~~L~~L~L~~ 485 (909)
..+. .-.-..++|+.|+...|... .+-....-.+|++++++. ..+..+|++ ..+++.+....
T Consensus 196 s~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~ 273 (1081)
T KOG0618|consen 196 SNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT-TLDVHPVPLNLQYLDISH-NNLSNLPEWIGACANLEALNANH 273 (1081)
T ss_pred hhccchhhhhhhhcccceEEecCcchheeeeccCcce-eeccccccccceeeecch-hhhhcchHHHHhcccceEecccc
Confidence 0000 00012234444444444322 111112245566666665 233444433 23455555555
Q ss_pred cCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeec-----------------------------------
Q 039311 486 TAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL----------------------------------- 530 (909)
Q Consensus 486 ~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l----------------------------------- 530 (909)
|.+..+|..+...++|++|.+..| .++.+|...+.+++|++|++
T Consensus 274 N~l~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~ 352 (1081)
T KOG0618|consen 274 NRLVALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS 352 (1081)
T ss_pred hhHHhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence 555555555555555555555444 23344444444445554444
Q ss_pred -----------------------------ccccccccccCcceeecCcc-ccccCCCCeeecCccccccccccccCccCC
Q 039311 531 -----------------------------AEALKELKAEGIAIREVPSS-IACLKNLGRLSFESFMCHEQMGLLLPISFG 580 (909)
Q Consensus 531 -----------------------------~~~l~~L~l~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 580 (909)
..+|+.|++++|.+..+|.+ +.++..|+.|+++||....+ +..+..
T Consensus 353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~L----p~tva~ 428 (1081)
T KOG0618|consen 353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTL----PDTVAN 428 (1081)
T ss_pred ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhh----hHHHHh
Confidence 12344444444444444432 34444444444444222211 122333
Q ss_pred CCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCe--ecchhhccCCCCCEEeecCCCCCc
Q 039311 581 LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFE--RIPESIIQLSHLFSLGISHCERLH 642 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~i~~l~~L~~L~L~~c~~L~ 642 (909)
+..|+.|...+|.+..+| .+..++.|+.+|++.|+++ .+|..... ++|++|++++|..+.
T Consensus 429 ~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 429 LGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV 490 (1081)
T ss_pred hhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence 444555555555555556 6678899999999999988 45543332 899999999998654
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.67 E-value=6e-16 Score=182.79 Aligned_cols=242 Identities=25% Similarity=0.272 Sum_probs=152.3
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTC 420 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 420 (909)
+|+.|.+.+|.++.+|.. +.+|++|++++|+++.+|.. .++|+.|++++|.+ ..+|.+ ..+|+.|++++|.
T Consensus 223 ~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L-~~Lp~l--p~~L~~L~Ls~N~- 293 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL--PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPL-THLPAL--PSGLCKLWIFGNQ- 293 (788)
T ss_pred CCCEEEccCCcCCCCCCC--CCCCcEEEecCCccCcccCc---ccccceeeccCCch-hhhhhc--hhhcCEEECcCCc-
Confidence 566666666666666643 35666666666666666642 34666666666653 334431 2456666666654
Q ss_pred cceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCC
Q 039311 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSS 500 (909)
Q Consensus 421 l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 500 (909)
+..+|.. +++|+.|++++| .++.+|.. ..+|+.|.+++|. +..+|..+.+|+.|+|++|.++.+|.. ..+
T Consensus 294 Lt~LP~~---p~~L~~LdLS~N-~L~~Lp~l--p~~L~~L~Ls~N~-L~~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~ 363 (788)
T PRK15387 294 LTSLPVL---PPGLQELSVSDN-QLASLPAL--PSELCKLWAYNNQ-LTSLPTLPSGLQELSVSDNQLASLPTL---PSE 363 (788)
T ss_pred ccccccc---ccccceeECCCC-ccccCCCC--cccccccccccCc-cccccccccccceEecCCCccCCCCCC---Ccc
Confidence 3344432 356777777764 45555542 2456667776643 445666666777777777777777753 345
Q ss_pred CCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCC
Q 039311 501 LILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFG 580 (909)
Q Consensus 501 L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 580 (909)
|+.|++++|. +..+|.. ..+|+.|++ ++|.+..+|.. .++|+.|++++|.... +|.+
T Consensus 364 L~~L~Ls~N~-L~~LP~l---~~~L~~LdL---------s~N~Lt~LP~l---~s~L~~LdLS~N~Lss-----IP~l-- 420 (788)
T PRK15387 364 LYKLWAYNNR-LTSLPAL---PSGLKELIV---------SGNRLTSLPVL---PSELKELMVSGNRLTS-----LPML-- 420 (788)
T ss_pred cceehhhccc-cccCccc---ccccceEEe---------cCCcccCCCCc---ccCCCEEEccCCcCCC-----CCcc--
Confidence 6667777764 3345542 123444443 55666666653 2578888888743321 2221
Q ss_pred CCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCe-ecchhh
Q 039311 581 LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFE-RIPESI 624 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~i 624 (909)
+.+|+.|++++|++..+|..++.+++|+.|+|++|+++ ..|..+
T Consensus 421 ~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 421 PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 35788999999999999999999999999999999998 444444
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.65 E-value=5.1e-16 Score=184.68 Aligned_cols=243 Identities=21% Similarity=0.314 Sum_probs=134.2
Q ss_pred CccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccc
Q 039311 341 ELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTC 420 (909)
Q Consensus 341 ~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~ 420 (909)
+...|+++++.++.+|..++ .+|+.|++++|+++.+|..+. .+|++|++++|.+ +.+|. +-..+|+.|++++|..
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip-~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~L-tsLP~-~l~~~L~~L~Ls~N~L 253 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP-EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQL-TSIPA-TLPDTIQEMELSINRI 253 (754)
T ss_pred CceEEEeCCCCcCcCCcccc-cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCcc-ccCCh-hhhccccEEECcCCcc
Confidence 34567777777777776553 467777777777777776553 4777777777754 34453 1124577777777653
Q ss_pred cceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCcc-ccCcceeeccccCccccCcccccCC
Q 039311 421 LLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPEL-SCNIEELSLDGTAIQEFPSSIERLS 499 (909)
Q Consensus 421 l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~-~~~L~~L~L~~~~i~~lp~~i~~l~ 499 (909)
..+|..+. .+|+.|++++| .++.+|..+ .++|+.|++++|. +..+|.. ..+|+.|++++|.+..+|..+. +
T Consensus 254 -~~LP~~l~--s~L~~L~Ls~N-~L~~LP~~l-~~sL~~L~Ls~N~-Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~--~ 325 (754)
T PRK15370 254 -TELPERLP--SALQSLDLFHN-KISCLPENL-PEELRYLSVYDNS-IRTLPAHLPSGITHLNVQSNSLTALPETLP--P 325 (754)
T ss_pred -CcCChhHh--CCCCEEECcCC-ccCcccccc-CCCCcEEECCCCc-cccCcccchhhHHHHHhcCCccccCCcccc--c
Confidence 35555543 46777777653 455666533 2466666666653 3344432 2345566666666665554432 4
Q ss_pred CCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccC
Q 039311 500 SLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF 579 (909)
Q Consensus 500 ~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 579 (909)
+|+.|++++|. +..+|..+ . ++|+.|++++|.... +|. .
T Consensus 326 sL~~L~Ls~N~-Lt~LP~~l--------------------------------~--~sL~~L~Ls~N~L~~-----LP~-~ 364 (754)
T PRK15370 326 GLKTLEAGENA-LTSLPASL--------------------------------P--PELQVLDVSKNQITV-----LPE-T 364 (754)
T ss_pred cceeccccCCc-cccCChhh--------------------------------c--CcccEEECCCCCCCc-----CCh-h
Confidence 55555555553 22244322 1 344444444422111 111 0
Q ss_pred CCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhc----cCCCCCEEeecCCC
Q 039311 580 GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESII----QLSHLFSLGISHCE 639 (909)
Q Consensus 580 ~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~----~l~~L~~L~L~~c~ 639 (909)
-.++|+.|+|++|.+..+|..+. .+|+.|++++|++..+|..+. .++.+..|+|.+|+
T Consensus 365 lp~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 365 LPPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hcCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence 12456666666666666665543 256666666666666555432 33566666666654
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.58 E-value=2.8e-15 Score=178.46 Aligned_cols=175 Identities=18% Similarity=0.311 Sum_probs=118.9
Q ss_pred CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCC-CCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~ 417 (909)
+..|+.|++++|.++.+|..+. .+|++|++++|+++.+|..+. .+|+.|+|++|.+. .+|. +. .+|+.|++++
T Consensus 198 p~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~ 271 (754)
T PRK15370 198 PEQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFH 271 (754)
T ss_pred ccCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcC
Confidence 3567788888888888877654 478888888888888876553 46888888887754 4553 32 4688888876
Q ss_pred ccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc-cccCcceeeccccCccccCcccc
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE-LSCNIEELSLDGTAIQEFPSSIE 496 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~-~~~~L~~L~L~~~~i~~lp~~i~ 496 (909)
|. +..+|..+. ++|++|++++| .++.+|..+ .++|+.|++++|.. ..+|. ...+|+.|++++|.++.+|..+.
T Consensus 272 N~-L~~LP~~l~--~sL~~L~Ls~N-~Lt~LP~~l-p~sL~~L~Ls~N~L-t~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~ 345 (754)
T PRK15370 272 NK-ISCLPENLP--EELRYLSVYDN-SIRTLPAHL-PSGITHLNVQSNSL-TALPETLPPGLKTLEAGENALTSLPASLP 345 (754)
T ss_pred Cc-cCccccccC--CCCcEEECCCC-ccccCcccc-hhhHHHHHhcCCcc-ccCCccccccceeccccCCccccCChhhc
Confidence 54 445666554 47888888885 466666543 24678888887544 34554 44578888888888888887664
Q ss_pred cCCCCCEEeccCCCCCCcCcccccCCCCCCeeec
Q 039311 497 RLSSLILLNLGNCLRLEGLPSKICKLKSLERLNL 530 (909)
Q Consensus 497 ~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l 530 (909)
++|+.|++++|. +..+|..+. ++|+.|++
T Consensus 346 --~sL~~L~Ls~N~-L~~LP~~lp--~~L~~LdL 374 (754)
T PRK15370 346 --PELQVLDVSKNQ-ITVLPETLP--PTITTLDV 374 (754)
T ss_pred --CcccEEECCCCC-CCcCChhhc--CCcCEEEC
Confidence 688888888874 345665432 34444444
No 19
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.56 E-value=3.3e-15 Score=180.43 Aligned_cols=410 Identities=19% Similarity=0.169 Sum_probs=231.0
Q ss_pred hhhheeeeeccCCCCHHHHHHHHHhcCCCcccchhHhhhccccEEeCCeEEehHHHHHHHHHHhhhcccCCC---CCeee
Q 039311 192 QNLFLDIASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVILNNKIMMHDLLQEMGREIVRQESIKDP---GKRSR 268 (909)
Q Consensus 192 k~cfl~~a~f~~~~~~~~li~~w~~~g~~~~~~i~~L~~~~li~~~~~~~~mhdll~e~~~~i~~~~~~~~~---~~~~r 268 (909)
+...-.|++|+.-+|+|+.|. .+..+.-|++.|||+...+.-.+-|.-.++..+.++..-.... ++...
T Consensus 409 ~~~lK~CFLycalFPED~~I~--------~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~ 480 (889)
T KOG4658|consen 409 PEELKSCFLYCALFPEDYEIK--------KEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKET 480 (889)
T ss_pred hHHHHHHHHhhccCCcccccc--------hHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeE
Confidence 334556777777778887776 6778999999999999766666777777777777766544333 45566
Q ss_pred eccchhHHHHhhcCCC--Cccee-EEEeecCCceEEeeCcccccCCCCCcEEEEecCCCCcCcceeecCCCCCCCCccEE
Q 039311 269 LWHHEDIYNVLTNNTG--TEAIE-GISLDMSKVKEIHLNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYL 345 (909)
Q Consensus 269 l~~~~~i~~~l~~~~~--~~~v~-~i~l~~~~~~~~~~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L 345 (909)
...||-+.++...... ...-+ .+.-+... ....+........|..
T Consensus 481 ~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~--------------------------------~~~~~~~~~~~~~rr~ 528 (889)
T KOG4658|consen 481 VKMHDVVREMALWIASDFGKQEENQIVSDGVG--------------------------------LSEIPQVKSWNSVRRM 528 (889)
T ss_pred EEeeHHHHHHHHHHhccccccccceEEECCcC--------------------------------ccccccccchhheeEE
Confidence 6777766665433222 00001 11110000 0011111124566777
Q ss_pred EeeCCCCCccCCCCCCCCeeEEEcCCCC--ccccccc-cccCCCCCEEecCCCcCCCcCCC-CCcccccccccccccccc
Q 039311 346 QWHGCPLKSLSSKIPPENLVSLEMPHSS--IKQLWKG-VQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCL 421 (909)
Q Consensus 346 ~l~~~~l~~lp~~~~~~~L~~L~L~~~~--i~~lp~~-~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l 421 (909)
.+.++.+..++......+|++|-+..|. +..++.+ +..++.|++|||++|..+..+|+ ++.+.+||+|+++++ .+
T Consensus 529 s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I 607 (889)
T KOG4658|consen 529 SLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GI 607 (889)
T ss_pred EEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-Cc
Confidence 7777777777777766678888887775 5666544 66788999999998888888887 888999999999884 46
Q ss_pred ceecccccCCCcccEeccccccCccccCcccc-CCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCC
Q 039311 422 LETHSSIQYLNKLVVLNLKHCRSLTSLSTSIH-LGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSS 500 (909)
Q Consensus 422 ~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~-l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~ 500 (909)
..+|.++++|++|.+||+..+..+..+|.... +.+|++|.+..-.... ... .-..+..+.+
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~--------------~~~----~l~el~~Le~ 669 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSN--------------DKL----LLKELENLEH 669 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecccccc--------------chh----hHHhhhcccc
Confidence 68899999999999999998887777766665 8999999886632000 000 0011233344
Q ss_pred CCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccccc--ccccCc-
Q 039311 501 LILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQM--GLLLPI- 577 (909)
Q Consensus 501 L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~--~~~~~~- 577 (909)
|+.|....+.. .+-..+..++.|.++.. .+.+.++.....+.++..+.+|+.|.+.+ |.... ......
T Consensus 670 L~~ls~~~~s~--~~~e~l~~~~~L~~~~~-----~l~~~~~~~~~~~~~~~~l~~L~~L~i~~--~~~~e~~~~~~~~~ 740 (889)
T KOG4658|consen 670 LENLSITISSV--LLLEDLLGMTRLRSLLQ-----SLSIEGCSKRTLISSLGSLGNLEELSILD--CGISEIVIEWEESL 740 (889)
T ss_pred hhhheeecchh--HhHhhhhhhHHHHHHhH-----hhhhcccccceeecccccccCcceEEEEc--CCCchhhccccccc
Confidence 44444332211 01111112222221111 11111223333444455556666666555 33211 000000
Q ss_pred -cC-CCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCee-cchhhc----------cCCCCC----EEeecCCCC
Q 039311 578 -SF-GLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFER-IPESII----------QLSHLF----SLGISHCER 640 (909)
Q Consensus 578 -~~-~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp~~i~----------~l~~L~----~L~L~~c~~ 640 (909)
.. .++++..+.+.+|.....+.+....++|+.|.+..+.... +..... .+.++. ..++.+.+.
T Consensus 741 ~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~ 820 (889)
T KOG4658|consen 741 IVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQ 820 (889)
T ss_pred chhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCce
Confidence 00 1334444445555544444455555666666666554331 111111 122222 223334444
Q ss_pred CcccCCCCCCcCceecccCcccccccCcc
Q 039311 641 LHSLPELPCDLSDIEAHCCSSLEALSGLS 669 (909)
Q Consensus 641 L~~lp~l~~sL~~L~i~~C~~L~~l~~~~ 669 (909)
+..+|-..+.++.+.+..||+|..+|...
T Consensus 821 i~~~~l~~~~l~~~~ve~~p~l~~~P~~~ 849 (889)
T KOG4658|consen 821 LYWLPLSFLKLEELIVEECPKLGKLPLLS 849 (889)
T ss_pred eEecccCccchhheehhcCcccccCcccc
Confidence 44445444558888899999998888754
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.42 E-value=6.9e-15 Score=136.31 Aligned_cols=125 Identities=18% Similarity=0.208 Sum_probs=84.8
Q ss_pred CCCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
+..++.|.+++|.+..+|+.+ .+.+|+.|++.+|+|+++|..+..+++|+.|+++-|+.....-.|+.+|.|+.|++.+
T Consensus 32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldlty 111 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY 111 (264)
T ss_pred hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence 455667777777777777776 7777777777777777777777777777777777776444444577777777777777
Q ss_pred cccc-ceecccccCCCcccEeccccccCccccCccc-cCCcCcEEEccC
Q 039311 418 CTCL-LETHSSIQYLNKLVVLNLKHCRSLTSLSTSI-HLGSLKKLILSG 464 (909)
Q Consensus 418 c~~l-~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~-~l~~L~~L~Ls~ 464 (909)
|+.. ..+|..+..++.|+.|+++++ ..+.+|..+ ++++||.|.+.+
T Consensus 112 nnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrd 159 (264)
T KOG0617|consen 112 NNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRD 159 (264)
T ss_pred cccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeecc
Confidence 6543 335666666677777777663 355555555 366666666555
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.40 E-value=6.6e-15 Score=136.41 Aligned_cols=166 Identities=30% Similarity=0.400 Sum_probs=117.8
Q ss_pred cceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCC
Q 039311 478 IEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNL 557 (909)
Q Consensus 478 L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L 557 (909)
++.|.+++|.++.+|+.|..+.+|+.|++.+| .++.+|..++.++.|+.|++. -+.+..+|.+++.++.|
T Consensus 35 ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvg---------mnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 35 ITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVG---------MNRLNILPRGFGSFPAL 104 (264)
T ss_pred hhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecc---------hhhhhcCccccCCCchh
Confidence 34445555666666666666666666666665 455666666666666666652 23445566777777777
Q ss_pred CeeecCccccccccccccCc-cCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeec
Q 039311 558 GRLSFESFMCHEQMGLLLPI-SFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGIS 636 (909)
Q Consensus 558 ~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~ 636 (909)
+.|++.. +++....+|. +..+..|+-|.|++|.+.-+|..++.+++|+.|.+..|.+.++|..++.+.+|++|++.
T Consensus 105 evldlty---nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiq 181 (264)
T KOG0617|consen 105 EVLDLTY---NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQ 181 (264)
T ss_pred hhhhccc---cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcc
Confidence 7777765 3444444554 66788899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccCCCCCCcCceecccCc
Q 039311 637 HCERLHSLPELPCDLSDIEAHCCS 660 (909)
Q Consensus 637 ~c~~L~~lp~l~~sL~~L~i~~C~ 660 (909)
++ +|+.+| |.|-.|++.+-.
T Consensus 182 gn-rl~vlp---pel~~l~l~~~k 201 (264)
T KOG0617|consen 182 GN-RLTVLP---PELANLDLVGNK 201 (264)
T ss_pred cc-eeeecC---hhhhhhhhhhhH
Confidence 85 466554 444445554433
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=1.4e-13 Score=151.91 Aligned_cols=252 Identities=21% Similarity=0.174 Sum_probs=124.1
Q ss_pred CCCeeEEEcCCCCcc-----ccccccccCCCCCEEecCCCcCCCc------CC-CCCccccccccccccccccceecccc
Q 039311 361 PENLVSLEMPHSSIK-----QLWKGVQRLVNLKHINLSHSEHLTK------IP-DLSLATNLESLNFQGCTCLLETHSSI 428 (909)
Q Consensus 361 ~~~L~~L~L~~~~i~-----~lp~~~~~L~~L~~L~Ls~~~~l~~------~p-~l~~l~~L~~L~L~~c~~l~~~p~~i 428 (909)
+.+|+.|+++++.+. .++..+...++|++|+++++..... ++ .+..+++|++|++++|......+..+
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 345777777777763 3455566666677777776654310 00 13334455555555544433333333
Q ss_pred cCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCc--------ccCccccCcceeeccccCcc-----ccCccc
Q 039311 429 QYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLM--------SFPELSCNIEELSLDGTAIQ-----EFPSSI 495 (909)
Q Consensus 429 ~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~--------~lp~~~~~L~~L~L~~~~i~-----~lp~~i 495 (909)
..+.+ . ++|+.|++++|.... .++....+|++|++++|.+. .++..+
T Consensus 102 ~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 102 ESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred HHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 32222 0 224444444443221 01111134455555555444 334445
Q ss_pred ccCCCCCEEeccCCCCCC----cCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccccc
Q 039311 496 ERLSSLILLNLGNCLRLE----GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQM 571 (909)
Q Consensus 496 ~~l~~L~~L~L~~c~~l~----~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~ 571 (909)
..+++|+.|++++|.... .++..+..+++|+.|++..+- +.+.....++..+..+++|+.|++++|....
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~-- 235 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNG----LTDEGASALAETLASLKSLEVLNLGDNNLTD-- 235 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCc----cChHHHHHHHHHhcccCCCCEEecCCCcCch--
Confidence 556667777777765442 122333444566666553320 1111222334445556667777776632221
Q ss_pred ccccCccC-----CCCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCee-----cchhhccC-CCCCEEee
Q 039311 572 GLLLPISF-----GLTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFER-----IPESIIQL-SHLFSLGI 635 (909)
Q Consensus 572 ~~~~~~~~-----~l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~~-----lp~~i~~l-~~L~~L~L 635 (909)
..+..+. ..+.|+.|++++|.+.+ +...+..+++|+.+++++|.+.. +...+... +.|++|++
T Consensus 236 -~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 236 -AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred -HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 1111111 23677777777777652 34455556777777777777762 22233444 56777777
Q ss_pred cCCC
Q 039311 636 SHCE 639 (909)
Q Consensus 636 ~~c~ 639 (909)
.+++
T Consensus 315 ~~~~ 318 (319)
T cd00116 315 KDDS 318 (319)
T ss_pred CCCC
Confidence 6643
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.32 E-value=2.1e-13 Score=142.49 Aligned_cols=125 Identities=17% Similarity=0.233 Sum_probs=93.4
Q ss_pred CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCcccc-ccccccCCCCCEEecCCCcCCCcCCC--CCcccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQL-WKGVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESL 413 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~l-p~~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L 413 (909)
+..-..++|..|.|+.||... ++++|+.|||++|+|..+ |..++.|+.|..|-+.++..++.+|. |+++..|+.|
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 456678899999999999765 889999999999999977 57788899988888877556777775 8899999999
Q ss_pred ccccccccceecccccCCCcccEeccccccCccccCccc--cCCcCcEEEccC
Q 039311 414 NFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSG 464 (909)
Q Consensus 414 ~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~ 464 (909)
.+.-|...-.....+..|++|..|.+.++ .+..++... .+.+++.+.+.-
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhc
Confidence 88877665555566777777777777763 355554422 355555555543
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.19 E-value=1.7e-12 Score=143.23 Aligned_cols=259 Identities=22% Similarity=0.191 Sum_probs=147.0
Q ss_pred CCCccEEEeeCCCCC-----ccCCCC-CCCCeeEEEcCCCCccc-------cccccccCCCCCEEecCCCcCCCcCCC-C
Q 039311 339 STELRYLQWHGCPLK-----SLSSKI-PPENLVSLEMPHSSIKQ-------LWKGVQRLVNLKHINLSHSEHLTKIPD-L 404 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~-----~lp~~~-~~~~L~~L~L~~~~i~~-------lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l 404 (909)
...|+.|.+.++.+. .++..+ ...+|++|+++++.+.. ++..+..+++|+.|++++|.+....+. +
T Consensus 22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 101 (319)
T cd00116 22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL 101 (319)
T ss_pred HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence 456999999999873 344444 55679999999987763 334567789999999999987654443 3
Q ss_pred Ccc---ccccccccccccccc----eecccccCC-CcccEeccccccCcc----ccCccc-cCCcCcEEEccCCCCCccc
Q 039311 405 SLA---TNLESLNFQGCTCLL----ETHSSIQYL-NKLVVLNLKHCRSLT----SLSTSI-HLGSLKKLILSGCSNLMSF 471 (909)
Q Consensus 405 ~~l---~~L~~L~L~~c~~l~----~~p~~i~~L-~~L~~L~L~~c~~l~----~lp~~~-~l~~L~~L~Ls~c~~l~~l 471 (909)
..+ ++|++|++++|.... .+...+..+ ++|+.|++++|.... .++..+ .+++|++|++++|.....
T Consensus 102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~- 180 (319)
T cd00116 102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA- 180 (319)
T ss_pred HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH-
Confidence 333 449999999987542 233455666 888999998876331 222222 356788888877653311
Q ss_pred CccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCC----cCcccccCCCCCCeeecccccccccccCcceeec
Q 039311 472 PELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLE----GLPSKICKLKSLERLNLAEALKELKAEGIAIREV 547 (909)
Q Consensus 472 p~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~----~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~l 547 (909)
.+..++..+..+++|+.|++++|.... .++..+..+++|+.|+++.|- +.+..+..+
T Consensus 181 ---------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~----l~~~~~~~l 241 (319)
T cd00116 181 ---------------GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN----LTDAGAAAL 241 (319)
T ss_pred ---------------HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc----CchHHHHHH
Confidence 001122223333455555555543221 122223344445555443220 000001111
Q ss_pred Cccc-cccCCCCeeecCcccccccccccc-CccCCCCCCCEEecCCCCCCC-----cccccCCC-CCCcEEECCCCCC
Q 039311 548 PSSI-ACLKNLGRLSFESFMCHEQMGLLL-PISFGLTSLTYLRLTDCGIIE-----LPECLGQL-SSRSILLLEKNNF 617 (909)
Q Consensus 548 p~~i-~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~l~~L~~L~Ls~~~l~~-----lp~~l~~l-~~L~~L~L~~n~l 617 (909)
...+ ...+.|+.|+++++.........+ ..+..+++|+.+++++|.+.+ +...+... +.|+.|++.+|.+
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 1111 123577777777622110011111 123345789999999998883 34455555 7888888887753
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.18 E-value=3.3e-12 Score=133.61 Aligned_cols=259 Identities=20% Similarity=0.216 Sum_probs=153.4
Q ss_pred EEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccc
Q 039311 345 LQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLL 422 (909)
Q Consensus 345 L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~ 422 (909)
.+-++-.++.+|..++. .-+.+.|..|.|+.+|+ .++.+++||.||||+|.+....|+ |.++..|-.|-+.+++.+.
T Consensus 51 VdCr~~GL~eVP~~LP~-~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLPP-ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred EEccCCCcccCcccCCC-cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 34455667888887764 46788999999999995 578899999999999988777776 8888888888888866677
Q ss_pred eecc-cccCCCcccEeccccccCccccCccc--cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCc-ccccC
Q 039311 423 ETHS-SIQYLNKLVVLNLKHCRSLTSLSTSI--HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPS-SIERL 498 (909)
Q Consensus 423 ~~p~-~i~~L~~L~~L~L~~c~~l~~lp~~~--~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~-~i~~l 498 (909)
.+|+ .++.|..|+.|.+.-|. +..++... .+++|..| .+..|.+..++. .+..+
T Consensus 130 ~l~k~~F~gL~slqrLllNan~-i~Cir~~al~dL~~l~lL---------------------slyDn~~q~i~~~tf~~l 187 (498)
T KOG4237|consen 130 DLPKGAFGGLSSLQRLLLNANH-INCIRQDALRDLPSLSLL---------------------SLYDNKIQSICKGTFQGL 187 (498)
T ss_pred hhhhhHhhhHHHHHHHhcChhh-hcchhHHHHHHhhhcchh---------------------cccchhhhhhccccccch
Confidence 7775 45677777777766543 22222221 24444444 444455565655 46666
Q ss_pred CCCCEEeccCCCCCC------------cCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCee--ecCc
Q 039311 499 SSLILLNLGNCLRLE------------GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRL--SFES 564 (909)
Q Consensus 499 ~~L~~L~L~~c~~l~------------~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L--~l~~ 564 (909)
..++.+.+..|.... ..|-+++.........+ ....+.+++..-..+ .++.+ .+.+
T Consensus 188 ~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl---------~~~Ri~q~~a~kf~c-~~esl~s~~~~ 257 (498)
T KOG4237|consen 188 AAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL---------YYKRINQEDARKFLC-SLESLPSRLSS 257 (498)
T ss_pred hccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH---------HHHHhcccchhhhhh-hHHhHHHhhcc
Confidence 667766666554211 11111222111111111 111112222110000 01111 0000
Q ss_pred cccccccccccCc--cCCCCCCCEEecCCCCCCCc-ccccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCC
Q 039311 565 FMCHEQMGLLLPI--SFGLTSLTYLRLTDCGIIEL-PECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCE 639 (909)
Q Consensus 565 ~~~~~~~~~~~~~--~~~l~~L~~L~Ls~~~l~~l-p~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 639 (909)
.|. .+...|. +..+++|++|+|++|.++.+ +.+|..+..+++|.|..|++..+.. .+.++..|+.|+|.+++
T Consensus 258 -~d~--~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 258 -EDF--PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred -ccC--cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 011 1111221 55678888888888888864 5677778888888888888876654 44677888888888864
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.79 E-value=4.2e-10 Score=123.20 Aligned_cols=189 Identities=24% Similarity=0.332 Sum_probs=107.6
Q ss_pred EecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCc
Q 039311 390 INLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLM 469 (909)
Q Consensus 390 L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~ 469 (909)
.||+.|++.....++..+..|+.+.|..| ....+|..++++..|.+|||+.| .+..+|..+..--|+.|.+++
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lpLkvli~sN----- 152 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLPLKVLIVSN----- 152 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCcceeEEEec-----
Confidence 34444443322223444444555554443 23456667777777777777763 366666655544455555444
Q ss_pred ccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCc
Q 039311 470 SFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPS 549 (909)
Q Consensus 470 ~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~ 549 (909)
|+++.+|..++.+..|..|+.+.| .+..+|..++.+.+|+.|.+. .|.+..+|.
T Consensus 153 ----------------Nkl~~lp~~ig~~~tl~~ld~s~n-ei~slpsql~~l~slr~l~vr---------Rn~l~~lp~ 206 (722)
T KOG0532|consen 153 ----------------NKLTSLPEEIGLLPTLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVR---------RNHLEDLPE 206 (722)
T ss_pred ----------------CccccCCcccccchhHHHhhhhhh-hhhhchHHhhhHHHHHHHHHh---------hhhhhhCCH
Confidence 555566666666666666666665 334455555555555554442 122222332
Q ss_pred cccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhh---cc
Q 039311 550 SIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESI---IQ 626 (909)
Q Consensus 550 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i---~~ 626 (909)
.+ . .-.|..||+++|++..+|..|.++..|++|-|.+|.+.+-|..| +.
T Consensus 207 El---------------------------~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGk 258 (722)
T KOG0532|consen 207 EL---------------------------C-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGK 258 (722)
T ss_pred HH---------------------------h-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccc
Confidence 11 1 12366777777777778888888888888888888888777655 23
Q ss_pred CCCCCEEeecCCC
Q 039311 627 LSHLFSLGISHCE 639 (909)
Q Consensus 627 l~~L~~L~L~~c~ 639 (909)
..-.++|++.-|.
T Consensus 259 VHIFKyL~~qA~q 271 (722)
T KOG0532|consen 259 VHIFKYLSTQACQ 271 (722)
T ss_pred eeeeeeecchhcc
Confidence 3445667777663
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.75 E-value=5.2e-10 Score=122.51 Aligned_cols=200 Identities=26% Similarity=0.325 Sum_probs=153.4
Q ss_pred cCccccCccc---cCCcCcEEEccCCCCCcccCccc---cCcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCc
Q 039311 443 RSLTSLSTSI---HLGSLKKLILSGCSNLMSFPELS---CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLP 516 (909)
Q Consensus 443 ~~l~~lp~~~---~l~~L~~L~Ls~c~~l~~lp~~~---~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp 516 (909)
..++.+|... .+.--...+++.| ....+|... ..|+.+.++.|.+..+|..++++..|++|+|+.| .+..+|
T Consensus 60 rrlk~fpr~a~~~~ltdt~~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp 137 (722)
T KOG0532|consen 60 RRLKEFPRGAASYDLTDTVFADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLP 137 (722)
T ss_pred chhhcCCCccccccccchhhhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCC
Confidence 4455555443 2444445566653 334455433 3467778888999999999999999999999987 567788
Q ss_pred ccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccCCCCCCCEEecCCCCCCC
Q 039311 517 SKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIE 596 (909)
Q Consensus 517 ~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~ 596 (909)
..++.|+ |+.|- +++|.++.+|..++.+..|..|+.+. +++. ..++.++++.+|+.|.+..|++..
T Consensus 138 ~~lC~lp-Lkvli---------~sNNkl~~lp~~ig~~~tl~~ld~s~---nei~-slpsql~~l~slr~l~vrRn~l~~ 203 (722)
T KOG0532|consen 138 DGLCDLP-LKVLI---------VSNNKLTSLPEEIGLLPTLAHLDVSK---NEIQ-SLPSQLGYLTSLRDLNVRRNHLED 203 (722)
T ss_pred hhhhcCc-ceeEE---------EecCccccCCcccccchhHHHhhhhh---hhhh-hchHHhhhHHHHHHHHHhhhhhhh
Confidence 8888776 44444 47788999999999999999999886 2222 234558889999999999999999
Q ss_pred cccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCC------CCCCcCceecccCc
Q 039311 597 LPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE------LPCDLSDIEAHCCS 660 (909)
Q Consensus 597 lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~------l~~sL~~L~i~~C~ 660 (909)
+|..+..| .|..||++.|++..||.++.++..|++|-|.+|+ |++-|. ...-.++|++.-|.
T Consensus 204 lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 204 LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCChHHHHhccceeeeeeecchhcc
Confidence 99999955 5889999999999999999999999999999875 776663 22235788888883
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.70 E-value=2e-08 Score=114.22 Aligned_cols=154 Identities=31% Similarity=0.438 Sum_probs=102.8
Q ss_pred CcceeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCC
Q 039311 477 NIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKN 556 (909)
Q Consensus 477 ~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~ 556 (909)
+|+.|++++|.+..+|..++.+++|+.|++++|. +..+|...+.+++|+.|++ +++.+..+|..+.....
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~l---------s~N~i~~l~~~~~~~~~ 210 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDL---------SGNKISDLPPEIELLSA 210 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheec---------cCCccccCchhhhhhhh
Confidence 4555555566666666667777777777777763 3445544445555555544 56667777776666666
Q ss_pred CCeeecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeec
Q 039311 557 LGRLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGIS 636 (909)
Q Consensus 557 L~~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~ 636 (909)
|+.|.+++|. ....+..+..+.++..|.+.++.+..++..++.+++|+.|++++|.++.++. +..+.+|+.|+++
T Consensus 211 L~~l~~~~N~----~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s 285 (394)
T COG4886 211 LEELDLSNNS----IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLS 285 (394)
T ss_pred hhhhhhcCCc----ceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-ccccCccCEEecc
Confidence 7777777642 1112333555677777777777777777788888888888888888888776 7788888888888
Q ss_pred CCCCCcccC
Q 039311 637 HCERLHSLP 645 (909)
Q Consensus 637 ~c~~L~~lp 645 (909)
++.....+|
T Consensus 286 ~n~~~~~~~ 294 (394)
T COG4886 286 GNSLSNALP 294 (394)
T ss_pred Cccccccch
Confidence 865544443
No 29
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.66 E-value=8.2e-10 Score=117.00 Aligned_cols=274 Identities=23% Similarity=0.248 Sum_probs=152.7
Q ss_pred CCCEEecCCCcCCCcCCC---CCcccccccccccccccccee-cccc-cCCCcccEeccccccCccccCcc--c-cCCcC
Q 039311 386 NLKHINLSHSEHLTKIPD---LSLATNLESLNFQGCTCLLET-HSSI-QYLNKLVVLNLKHCRSLTSLSTS--I-HLGSL 457 (909)
Q Consensus 386 ~L~~L~Ls~~~~l~~~p~---l~~l~~L~~L~L~~c~~l~~~-p~~i-~~L~~L~~L~L~~c~~l~~lp~~--~-~l~~L 457 (909)
.|+.|.++++.-...-+- ...++|+++|.+.+|..+++. -.++ .++++|++|++..|.+++...-. . ++++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 456666666654443331 457788888888888754432 1222 46788888888888877765432 1 58888
Q ss_pred cEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCCCCCc--CcccccCCCCCCeeecccccc
Q 039311 458 KKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEG--LPSKICKLKSLERLNLAEALK 535 (909)
Q Consensus 458 ~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~--lp~~l~~L~~L~~L~l~~~l~ 535 (909)
++|++++|..+.. ++++ ....++..++.+.+.+|...+. +-..-+....+..+++..|..
T Consensus 219 ~~lNlSwc~qi~~---------------~gv~---~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~ 280 (483)
T KOG4341|consen 219 KYLNLSWCPQISG---------------NGVQ---ALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQ 280 (483)
T ss_pred HHhhhccCchhhc---------------Ccch---HHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhcc
Confidence 8888888876543 2222 1123344455555555533221 000001122222222211100
Q ss_pred cccccCcceeecCccccccCCCCeeecCccccccccccccCccC-CCCCCCEEecCCCCCC-C--cccccCCCCCCcEEE
Q 039311 536 ELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGII-E--LPECLGQLSSRSILL 611 (909)
Q Consensus 536 ~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~l~-~--lp~~l~~l~~L~~L~ 611 (909)
+.+.. +-..-..+..|+.|..++ |.+..+..+..++ +..+|+.|.++.|+.. + +..--.+.+.|+.++
T Consensus 281 ---lTD~~---~~~i~~~c~~lq~l~~s~--~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 281 ---LTDED---LWLIACGCHALQVLCYSS--CTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred ---ccchH---HHHHhhhhhHhhhhcccC--CCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 00000 000112345667777776 7766655555543 3678888888888643 2 222224677888888
Q ss_pred CCCCCCe---ecchhhccCCCCCEEeecCCCCCccc-----C---CCCCCcCceecccCcccccccCcchhccccCCCcc
Q 039311 612 LEKNNFE---RIPESIIQLSHLFSLGISHCERLHSL-----P---ELPCDLSDIEAHCCSSLEALSGLSILFTQTSWNSQ 680 (909)
Q Consensus 612 L~~n~l~---~lp~~i~~l~~L~~L~L~~c~~L~~l-----p---~l~~sL~~L~i~~C~~L~~l~~~~~l~~~~~~~~~ 680 (909)
+.++... ++-.--.+++.|+.|.|++|..++.- . .....++.|++.+||.++.....
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le------------ 420 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE------------ 420 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH------------
Confidence 8887654 23334457888999999988776643 1 23446777888888877654331
Q ss_pred eeEecccCCCCHHHHHHHH
Q 039311 681 FFYFVNCFKLDKNELKEII 699 (909)
Q Consensus 681 ~l~~~~C~~L~~~~~~~~~ 699 (909)
.+..|++|+...+.++.
T Consensus 421 --~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 421 --HLSICRNLERIELIDCQ 437 (483)
T ss_pred --HHhhCcccceeeeechh
Confidence 34567777665544443
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.65 E-value=1.9e-08 Score=114.42 Aligned_cols=174 Identities=25% Similarity=0.265 Sum_probs=104.3
Q ss_pred CCccEEEeeCCCCCccCCCCCCC--CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPE--NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~--~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
..+..|++.++.+..+|...... +|+.|++++|.+..+|..++.+++|+.|++++|++....+..+.+++|+.|++++
T Consensus 116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 56777777777777777766443 7777777777777777677777777777777776443333344777777777777
Q ss_pred ccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCc--ccCccccCcceeeccccCccccCccc
Q 039311 418 CTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLM--SFPELSCNIEELSLDGTAIQEFPSSI 495 (909)
Q Consensus 418 c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~--~lp~~~~~L~~L~L~~~~i~~lp~~i 495 (909)
|. +..+|..++.+..|++|.++++..+..+....++.++..|.+.++.... .....+.+++.|++++|.+..++. +
T Consensus 196 N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~ 273 (394)
T COG4886 196 NK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS-L 273 (394)
T ss_pred Cc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc-c
Confidence 53 4556666666666777777765433333333345566666544433222 222233345555555555555555 5
Q ss_pred ccCCCCCEEeccCCCCCCcC
Q 039311 496 ERLSSLILLNLGNCLRLEGL 515 (909)
Q Consensus 496 ~~l~~L~~L~L~~c~~l~~l 515 (909)
+.+.+|+.|+++++......
T Consensus 274 ~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 274 GSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred cccCccCEEeccCccccccc
Confidence 55555555555555444333
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=1.5e-08 Score=102.71 Aligned_cols=99 Identities=24% Similarity=0.252 Sum_probs=54.3
Q ss_pred CeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHC 442 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c 442 (909)
.|++|||++|.|+.+.++++-+++++.|++|+|.+. .+.++..+++|+.|+|++|.. .++...=.+|-+.++|.|++|
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~nLa~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~La~N 362 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQNLAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLKLAQN 362 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEecccccee-eehhhhhcccceEeecccchh-HhhhhhHhhhcCEeeeehhhh
Confidence 677777777777777777777777777777777643 333355666666666666432 222222223444555555552
Q ss_pred cCccccCccccCCcCcEEEccC
Q 039311 443 RSLTSLSTSIHLGSLKKLILSG 464 (909)
Q Consensus 443 ~~l~~lp~~~~l~~L~~L~Ls~ 464 (909)
.++++.....+-+|..|++++
T Consensus 363 -~iE~LSGL~KLYSLvnLDl~~ 383 (490)
T KOG1259|consen 363 -KIETLSGLRKLYSLVNLDLSS 383 (490)
T ss_pred -hHhhhhhhHhhhhheeccccc
Confidence 244443333344444443333
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.52 E-value=6.6e-08 Score=94.69 Aligned_cols=85 Identities=20% Similarity=0.288 Sum_probs=15.5
Q ss_pred ccCCCCCCCCeeEEEcCCCCccccccccc-cCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccc-cCC
Q 039311 354 SLSSKIPPENLVSLEMPHSSIKQLWKGVQ-RLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSI-QYL 431 (909)
Q Consensus 354 ~lp~~~~~~~L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i-~~L 431 (909)
..|...++.++++|+|+++.|..+. .++ .+.+|+.|+|++|. ++.++.+..+++|++|++++|... .+...+ ..+
T Consensus 11 ~~~~~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~l 87 (175)
T PF14580_consen 11 QIAQYNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNL 87 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-
T ss_pred ccccccccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCCCC-ccccchHHhC
Confidence 3333334444455555555544442 233 34455555555554 233444555555555555554322 222222 235
Q ss_pred CcccEecccc
Q 039311 432 NKLVVLNLKH 441 (909)
Q Consensus 432 ~~L~~L~L~~ 441 (909)
++|+.|++++
T Consensus 88 p~L~~L~L~~ 97 (175)
T PF14580_consen 88 PNLQELYLSN 97 (175)
T ss_dssp TT--EEE-TT
T ss_pred CcCCEEECcC
Confidence 5555555555
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.52 E-value=2e-08 Score=101.79 Aligned_cols=195 Identities=21% Similarity=0.173 Sum_probs=102.4
Q ss_pred CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCC----CCcccCccccCcc
Q 039311 404 LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCS----NLMSFPELSCNIE 479 (909)
Q Consensus 404 l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~----~l~~lp~~~~~L~ 479 (909)
++-+.+|..+.++.|.- ..+-.-...-+.|+++...+ +.+...|...-...+..+.-+.-. ......+....|+
T Consensus 210 l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~-s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt 287 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHN-TTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELT 287 (490)
T ss_pred hHHhhhhheeeeeccch-hheeceeecCchhheeeeec-ccccccccccchhhhcCccCCCCCccCCceEEecchHhhhh
Confidence 45566777777777642 11111112234566666654 223333332222222221111100 0000111234678
Q ss_pred eeeccccCccccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCe
Q 039311 480 ELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGR 559 (909)
Q Consensus 480 ~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~ 559 (909)
+|+|++|.|+.+..++.-++.++.|+++.|..... ..+..|++|..|++ ++|.+.++..+-.++.|++.
T Consensus 288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDL---------S~N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDL---------SGNLLAECVGWHLKLGNIKT 356 (490)
T ss_pred hccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeec---------ccchhHhhhhhHhhhcCEee
Confidence 89999999999999888899999999998865432 12555666666655 44444555444455556666
Q ss_pred eecCccccccccccccCccCCCCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecc--hhhccCCCCCEEeecC
Q 039311 560 LSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIP--ESIIQLSHLFSLGISH 637 (909)
Q Consensus 560 L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~L~~ 637 (909)
|.+++ |.+.++ ..++.+-+|..|++++|++..+. .+|+++|.|+.|.|.+
T Consensus 357 L~La~---------------------------N~iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 357 LKLAQ---------------------------NKIETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTG 408 (490)
T ss_pred eehhh---------------------------hhHhhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcC
Confidence 66655 332222 13344445555555555555332 2556666666666666
Q ss_pred CC
Q 039311 638 CE 639 (909)
Q Consensus 638 c~ 639 (909)
||
T Consensus 409 NP 410 (490)
T KOG1259|consen 409 NP 410 (490)
T ss_pred CC
Confidence 54
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.50 E-value=7.6e-08 Score=94.26 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=14.9
Q ss_pred CCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCcccccccc-ccCCCCCEEecCCCc
Q 039311 340 TELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGV-QRLVNLKHINLSHSE 396 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~-~~L~~L~~L~Ls~~~ 396 (909)
.+|+.|++++|.++.++..-.+.+|++|++++|.|+.+..++ ..+++|+.|++++|+
T Consensus 42 ~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~ 99 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK 99 (175)
T ss_dssp TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS-
T ss_pred cCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc
Confidence 344445555554444444334444555555555444443333 234444455444443
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.4e-08 Score=106.59 Aligned_cols=35 Identities=20% Similarity=0.229 Sum_probs=17.0
Q ss_pred CCCCCcEEECCCCCCeecch--hhccCCCCCEEeecC
Q 039311 603 QLSSRSILLLEKNNFERIPE--SIIQLSHLFSLGISH 637 (909)
Q Consensus 603 ~l~~L~~L~L~~n~l~~lp~--~i~~l~~L~~L~L~~ 637 (909)
.+++|+.|++..|++..++. .+..+++|+.|.+..
T Consensus 299 ~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 299 TFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred ccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 34555555555555543332 334444555555443
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=2.3e-08 Score=106.76 Aligned_cols=152 Identities=18% Similarity=0.163 Sum_probs=81.6
Q ss_pred cCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC----CCCCeeEEEcCCCCcccccccc--
Q 039311 309 TNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI----PPENLVSLEMPHSSIKQLWKGV-- 381 (909)
Q Consensus 309 ~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~----~~~~L~~L~L~~~~i~~lp~~~-- 381 (909)
+++++||...+.+........+ ...+ ++++|.|++++|-+..+-... ++++|+.|+++.|.+...+.+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~----~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~ 193 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIE----EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT 193 (505)
T ss_pred hhHHhhhheeecCccccccchh----hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch
Confidence 3555666666654432221111 1122 566667777666544332221 5567777777777666555332
Q ss_pred ccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceecccccCCCcccEeccccccCccccCc---cccCCc
Q 039311 382 QRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLST---SIHLGS 456 (909)
Q Consensus 382 ~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~---~~~l~~ 456 (909)
..+++|+.|.|+.|.+...--. +..+|+|+.|+|++|.....-..+...+..|+.|||++|..+ +++. ...++.
T Consensus 194 ~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~ 272 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPG 272 (505)
T ss_pred hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccc
Confidence 2466777777777765421111 345677777777776543333344455666777777775433 3332 224666
Q ss_pred CcEEEccCC
Q 039311 457 LKKLILSGC 465 (909)
Q Consensus 457 L~~L~Ls~c 465 (909)
|+.|+++.|
T Consensus 273 L~~Lnls~t 281 (505)
T KOG3207|consen 273 LNQLNLSST 281 (505)
T ss_pred hhhhhcccc
Confidence 666666554
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=6.4e-09 Score=105.44 Aligned_cols=109 Identities=25% Similarity=0.345 Sum_probs=65.8
Q ss_pred CCccccccccccccccccceecccccCCCcccEeccccccCccccCccc---cCCcCcEEEccCCCCCccc-----Cccc
Q 039311 404 LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSI---HLGSLKKLILSGCSNLMSF-----PELS 475 (909)
Q Consensus 404 l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~---~l~~L~~L~Ls~c~~l~~l-----p~~~ 475 (909)
++.|.+|+.|.++|......+...|.+-.+|+.|||++|..++...... +++.|+.|++++|...... ....
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 4455666666666666656666667777778888888877776654333 5788888888888655432 2234
Q ss_pred cCcceeeccccCc----cccCcccccCCCCCEEeccCCCCC
Q 039311 476 CNIEELSLDGTAI----QEFPSSIERLSSLILLNLGNCLRL 512 (909)
Q Consensus 476 ~~L~~L~L~~~~i----~~lp~~i~~l~~L~~L~L~~c~~l 512 (909)
++|+.|+|+|+.= ..+..-...+++|..|+|++|..+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 5566666666521 122222345666666666666443
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.33 E-value=4.2e-08 Score=102.15 Aligned_cols=247 Identities=16% Similarity=0.135 Sum_probs=123.7
Q ss_pred cccCCCCCEEecCCCcCCCcCC-----CCCcccccccccccccc---ccceecc-------cccCCCcccEeccccccCc
Q 039311 381 VQRLVNLKHINLSHSEHLTKIP-----DLSLATNLESLNFQGCT---CLLETHS-------SIQYLNKLVVLNLKHCRSL 445 (909)
Q Consensus 381 ~~~L~~L~~L~Ls~~~~l~~~p-----~l~~l~~L~~L~L~~c~---~l~~~p~-------~i~~L~~L~~L~L~~c~~l 445 (909)
.-.+..++.|+|++|.+-+.-. .+.+.++|+..++++-- ...++|+ .+...++|++||||+|-.-
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 3456677888888876654332 24555667766666521 1122232 2233446666666665322
Q ss_pred cccCcc----c-cCCcCcEEEccCCCCCcccCccc-cCcceeeccccCccccCcccccCCCCCEEeccCCCCCCc----C
Q 039311 446 TSLSTS----I-HLGSLKKLILSGCSNLMSFPELS-CNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCLRLEG----L 515 (909)
Q Consensus 446 ~~lp~~----~-~l~~L~~L~Ls~c~~l~~lp~~~-~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~~l~~----l 515 (909)
..-+.. + ++.+|+.|.|.+|..-..-...+ ..|..|. ...-++.-+.|+.+....|..-.. +
T Consensus 106 ~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~ga~~~ 177 (382)
T KOG1909|consen 106 PKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--------VNKKAASKPKLRVFICGRNRLENGGATAL 177 (382)
T ss_pred ccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--------HHhccCCCcceEEEEeeccccccccHHHH
Confidence 111111 1 35555555555553221100000 0000000 111233455666666665532211 1
Q ss_pred cccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCc-cCCCCCCCEEecCCCCC
Q 039311 516 PSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPI-SFGLTSLTYLRLTDCGI 594 (909)
Q Consensus 516 p~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~l 594 (909)
...+...+.|+.+.+..+- +....++-+...+..+++|+.|+|.+|......+..+.. +..+++|++|++++|.+
T Consensus 178 A~~~~~~~~leevr~~qN~----I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 178 AEAFQSHPTLEEVRLSQNG----IRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHhccccceEEEeccc----ccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 1224444555555553320 011111223345667777777777775443332222322 44567888888888877
Q ss_pred CC-----ccccc-CCCCCCcEEECCCCCCe-----ecchhhccCCCCCEEeecCCC
Q 039311 595 IE-----LPECL-GQLSSRSILLLEKNNFE-----RIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 595 ~~-----lp~~l-~~l~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 639 (909)
.. +...+ ...|+|+.|.+.+|.++ .+-..+...|.|+.|+|++|.
T Consensus 254 ~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 254 ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 73 22222 34788888888888776 233455667888888888874
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.20 E-value=4.7e-06 Score=91.45 Aligned_cols=43 Identities=26% Similarity=0.480 Sum_probs=25.3
Q ss_pred ccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc
Q 039311 428 IQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE 473 (909)
Q Consensus 428 i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~ 473 (909)
+..+.+++.|++++| .++.+|. -..+|+.|.+++|..+..+|+
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~ 90 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPV--LPNELTEITIENCNNLTTLPG 90 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCC--CCCCCcEEEccCCCCcccCCc
Confidence 334566666666666 5666662 234567777776666655553
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.15 E-value=3.1e-06 Score=101.18 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=84.9
Q ss_pred CeeEEEcCCCCcc-ccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccccccceecccccCCCcccEeccc
Q 039311 363 NLVSLEMPHSSIK-QLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLK 440 (909)
Q Consensus 363 ~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~ 440 (909)
.++.|+|+++.+. .+|..+..+++|+.|+|++|.+.+.+|. ++.+++|+.|+|++|.....+|..++.+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788889888887 6788888899999999999888878885 8888999999999988888888888888999999988
Q ss_pred cccCccccCcccc--CCcCcEEEccCCCCCc
Q 039311 441 HCRSLTSLSTSIH--LGSLKKLILSGCSNLM 469 (909)
Q Consensus 441 ~c~~l~~lp~~~~--l~~L~~L~Ls~c~~l~ 469 (909)
+|.....+|..+. ..++..+++.+|..+.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCcccc
Confidence 8776667776653 3455667776665443
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.12 E-value=1.3e-07 Score=100.75 Aligned_cols=255 Identities=20% Similarity=0.260 Sum_probs=140.3
Q ss_pred cccCCCCCEEecCCCcCCCcCC--CC-Cccccccccccccccccceec-c-cccCCCcccEeccccccCccccC--c-cc
Q 039311 381 VQRLVNLKHINLSHSEHLTKIP--DL-SLATNLESLNFQGCTCLLETH-S-SIQYLNKLVVLNLKHCRSLTSLS--T-SI 452 (909)
Q Consensus 381 ~~~L~~L~~L~Ls~~~~l~~~p--~l-~~l~~L~~L~L~~c~~l~~~p-~-~i~~L~~L~~L~L~~c~~l~~lp--~-~~ 452 (909)
..+++++..|++.+|..++... .+ ..+++|++|++..|..++... . -...+++|++|+++.|..++.-. . .-
T Consensus 160 ~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 160 ASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 4567788888888887555433 12 368889999999887665432 1 23467899999999988776511 1 11
Q ss_pred cCCcCcEEEccCCCCCcc--c---CccccCcceeeccccCc-cccC--cccccCCCCCEEeccCCCCCCcCcccccCCCC
Q 039311 453 HLGSLKKLILSGCSNLMS--F---PELSCNIEELSLDGTAI-QEFP--SSIERLSSLILLNLGNCLRLEGLPSKICKLKS 524 (909)
Q Consensus 453 ~l~~L~~L~Ls~c~~l~~--l---p~~~~~L~~L~L~~~~i-~~lp--~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~ 524 (909)
+++.++.+.+.||..++. + ......+.++++..+.. +... ..-..+..|+.|..++|......+-.
T Consensus 240 G~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~------ 313 (483)
T KOG4341|consen 240 GCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLW------ 313 (483)
T ss_pred cchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHH------
Confidence 466677777777765431 1 01111123333333311 1110 00123455555555555443322210
Q ss_pred CCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccCccC-CCCCCCEEecCCCCCCC---cccc
Q 039311 525 LERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLPISF-GLTSLTYLRLTDCGIIE---LPEC 600 (909)
Q Consensus 525 L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~l~~---lp~~ 600 (909)
.-..+..+|+.|-+.+ |.++.+..+..+. +.+.|+.|++..|.... +...
T Consensus 314 ------------------------aLg~~~~~L~~l~l~~--c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl 367 (483)
T KOG4341|consen 314 ------------------------ALGQHCHNLQVLELSG--CQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL 367 (483)
T ss_pred ------------------------HHhcCCCceEEEeccc--cchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh
Confidence 0123345555666655 5555444444433 36677777777776552 3333
Q ss_pred cCCCCCCcEEECCCCCCe------ecchhhccCCCCCEEeecCCCCCcccC----CCCCCcCceecccCcccccccC
Q 039311 601 LGQLSSRSILLLEKNNFE------RIPESIIQLSHLFSLGISHCERLHSLP----ELPCDLSDIEAHCCSSLEALSG 667 (909)
Q Consensus 601 l~~l~~L~~L~L~~n~l~------~lp~~i~~l~~L~~L~L~~c~~L~~lp----~l~~sL~~L~i~~C~~L~~l~~ 667 (909)
-.+++.|+.|.|++|... .+..+...+..|+.|.|++|+.+..-. ...++|+.+++.+|....+-+.
T Consensus 368 s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 368 SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhh
Confidence 356777777777776433 122333556778888888888765221 1233666677777765544433
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.10 E-value=2.5e-07 Score=96.55 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=31.6
Q ss_pred CCCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCe
Q 039311 581 LTSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 618 (909)
.|+|+.|.+.+|.++. +...+...+.|+.|+|++|.+.
T Consensus 269 ~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 269 APSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred CCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 6899999999998882 4456667899999999999883
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=7.1e-07 Score=101.84 Aligned_cols=58 Identities=31% Similarity=0.437 Sum_probs=26.6
Q ss_pred CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccc
Q 039311 360 PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGC 418 (909)
Q Consensus 360 ~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c 418 (909)
.+.+|+.|++.+|.|+++...+..+++|++|++++|. ++.+..+..++.|+.|++++|
T Consensus 93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGN 150 (414)
T ss_pred cccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccC
Confidence 3345555555555555444334445555555555443 233333444444444444443
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.04 E-value=5.2e-06 Score=99.23 Aligned_cols=109 Identities=18% Similarity=0.223 Sum_probs=94.1
Q ss_pred CccEEEeeCCCCC-ccCCCC-CCCCeeEEEcCCCCcc-ccccccccCCCCCEEecCCCcCCCcCCC-CCccccccccccc
Q 039311 341 ELRYLQWHGCPLK-SLSSKI-PPENLVSLEMPHSSIK-QLWKGVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQ 416 (909)
Q Consensus 341 ~Lr~L~l~~~~l~-~lp~~~-~~~~L~~L~L~~~~i~-~lp~~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~ 416 (909)
.++.|+++++.+. .+|..+ .+.+|+.|+|++|.+. .+|..++.+++|+.|+|++|.+...+|+ ++.+++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999885 567666 7899999999999997 7888999999999999999999988887 9999999999999
Q ss_pred cccccceecccccCC-CcccEeccccccCccccC
Q 039311 417 GCTCLLETHSSIQYL-NKLVVLNLKHCRSLTSLS 449 (909)
Q Consensus 417 ~c~~l~~~p~~i~~L-~~L~~L~L~~c~~l~~lp 449 (909)
+|.....+|..++.+ .++..+++.+|..+...|
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 999999999988764 577888888876555443
No 45
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.02 E-value=1.5e-05 Score=87.49 Aligned_cols=60 Identities=17% Similarity=0.377 Sum_probs=31.0
Q ss_pred CCCccEEEeeCCCCCccCCCCCCCCeeEEEcCC-CCccccccccccCCCCCEEecCCCcCCCcCC
Q 039311 339 STELRYLQWHGCPLKSLSSKIPPENLVSLEMPH-SSIKQLWKGVQRLVNLKHINLSHSEHLTKIP 402 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~-~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p 402 (909)
..+++.|++++|.++++|. -+.+|++|.+++ ++++.+|..+ ..+|++|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 3556667777666666662 223566666654 3444444433 2355555555554333333
No 46
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.01 E-value=4.3e-06 Score=67.04 Aligned_cols=58 Identities=28% Similarity=0.441 Sum_probs=50.3
Q ss_pred CCCCEEecCCCCCCCcc-cccCCCCCCcEEECCCCCCeecch-hhccCCCCCEEeecCCC
Q 039311 582 TSLTYLRLTDCGIIELP-ECLGQLSSRSILLLEKNNFERIPE-SIIQLSHLFSLGISHCE 639 (909)
Q Consensus 582 ~~L~~L~Ls~~~l~~lp-~~l~~l~~L~~L~L~~n~l~~lp~-~i~~l~~L~~L~L~~c~ 639 (909)
|+|++|++++|++..+| ..+.++++|+.|++++|+++.+|. .+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 57889999999988877 477889999999999999998775 67899999999999885
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.9e-07 Score=95.01 Aligned_cols=180 Identities=18% Similarity=0.203 Sum_probs=111.1
Q ss_pred cceeeccccCcc--ccCcccccCCCCCEEeccCCCCCCcCcccccCCCCCCeeecccccccccccCcceeecCccccccC
Q 039311 478 IEELSLDGTAIQ--EFPSSIERLSSLILLNLGNCLRLEGLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLK 555 (909)
Q Consensus 478 L~~L~L~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~ 555 (909)
+++|+|+...|+ .+...+..+.+|+.|.|.++.....+-..+.+-.+|+.|+++.+ +|..-..+.-.+..++
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~------sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC------SGFTENALQLLLSSCS 260 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc------cccchhHHHHHHHhhh
Confidence 556666666655 44444667777777777777666666666666677777776433 1211112223356777
Q ss_pred CCCeeecCccccccccccccCccCC-CCCCCEEecCCCCCC----CcccccCCCCCCcEEECCCCCC-e-ecchhhccCC
Q 039311 556 NLGRLSFESFMCHEQMGLLLPISFG-LTSLTYLRLTDCGII----ELPECLGQLSSRSILLLEKNNF-E-RIPESIIQLS 628 (909)
Q Consensus 556 ~L~~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~Ls~~~l~----~lp~~l~~l~~L~~L~L~~n~l-~-~lp~~i~~l~ 628 (909)
.|..|+++. |.-........... -++|+.|+|++|.-. .+..-...+|+|..|||++|.. + ..-..+.+++
T Consensus 261 ~L~~LNlsW--c~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~ 338 (419)
T KOG2120|consen 261 RLDELNLSW--CFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFN 338 (419)
T ss_pred hHhhcCchH--hhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcc
Confidence 788888877 54333221111111 467888888887432 2333345688899999988753 3 3444677899
Q ss_pred CCCEEeecCCCCCc--ccC--CCCCCcCceecccCcccccc
Q 039311 629 HLFSLGISHCERLH--SLP--ELPCDLSDIEAHCCSSLEAL 665 (909)
Q Consensus 629 ~L~~L~L~~c~~L~--~lp--~l~~sL~~L~i~~C~~L~~l 665 (909)
.|++|.++.|..+- .+- ...|+|.+|++.+|-+=+.+
T Consensus 339 ~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~m 379 (419)
T KOG2120|consen 339 YLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTM 379 (419)
T ss_pred hheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHH
Confidence 99999999997552 010 13558899999998654443
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.86 E-value=1.7e-05 Score=63.60 Aligned_cols=55 Identities=25% Similarity=0.387 Sum_probs=25.0
Q ss_pred eeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC-CCccccccccccccc
Q 039311 364 LVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD-LSLATNLESLNFQGC 418 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~-l~~l~~L~~L~L~~c 418 (909)
|++|++++|+++.+|. .+..+++|++|++++|.+....|+ |..+++|++|++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4444444444444442 334445555555554443333332 445555555555444
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.77 E-value=6.3e-06 Score=94.09 Aligned_cols=167 Identities=23% Similarity=0.254 Sum_probs=107.7
Q ss_pred CCCccEEEeeCCCCCccCC-CCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCcccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSS-KIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQG 417 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~-~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~ 417 (909)
+.+|.+|++.+|.++.+.. .-.+.+|++|++++|.|.++. ++..+..|+.|++++|. +..++.+..+++|+.+++++
T Consensus 94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNL-ISDISGLESLKSLKLLDLSY 171 (414)
T ss_pred ccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccCc-chhccCCccchhhhcccCCc
Confidence 5678888888888888877 446788888888888888874 36677778888888886 55666777788888888888
Q ss_pred ccccceec-ccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCC--cccCcccc-CcceeeccccCccccCc
Q 039311 418 CTCLLETH-SSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNL--MSFPELSC-NIEELSLDGTAIQEFPS 493 (909)
Q Consensus 418 c~~l~~~p-~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l--~~lp~~~~-~L~~L~L~~~~i~~lp~ 493 (909)
|.....-+ . +..+.+|+.+.+.++. +..+.....+..+..+++..+... ..++.... .|+.++++++.+..++.
T Consensus 172 n~i~~ie~~~-~~~~~~l~~l~l~~n~-i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~ 249 (414)
T KOG0531|consen 172 NRIVDIENDE-LSELISLEELDLGGNS-IREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPE 249 (414)
T ss_pred chhhhhhhhh-hhhccchHHHhccCCc-hhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccc
Confidence 76543222 1 5677778888887743 333333223344444444443221 11111111 26777777777777765
Q ss_pred ccccCCCCCEEeccCC
Q 039311 494 SIERLSSLILLNLGNC 509 (909)
Q Consensus 494 ~i~~l~~L~~L~L~~c 509 (909)
.+..+..+..|++.++
T Consensus 250 ~~~~~~~l~~l~~~~n 265 (414)
T KOG0531|consen 250 GLENLKNLPVLDLSSN 265 (414)
T ss_pred cccccccccccchhhc
Confidence 5666666666666654
No 50
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.73 E-value=0.00034 Score=88.78 Aligned_cols=201 Identities=14% Similarity=0.193 Sum_probs=127.5
Q ss_pred CCeEEEEEeCCCCHH---HHHHHhhccCCCCCCCEEEEEeCCchhhh--hcC-CCcEEECC----CCCHHHHHHHHHHhh
Q 039311 49 RKKVLIVFDDVSTSE---QMEFLIGNQGWLMQGSRLIITARDKQVLK--NCG-VDTIYEVK----ELFDDDARMLFSRYA 118 (909)
Q Consensus 49 ~kr~LlVLDDv~~~~---~~~~l~~~~~~~~~gSrIivTTR~~~v~~--~~~-~~~~y~l~----~L~~~es~~LF~~~a 118 (909)
..+++|||||+...+ ..+.+..-......+-++|||||...-.. ... .+...++. +++.+|+.+||....
T Consensus 120 ~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~ 199 (903)
T PRK04841 120 HQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL 199 (903)
T ss_pred CCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc
Confidence 678999999997642 12233333333456778999999842111 111 13355666 899999999997654
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHHHHHHhcCCCcchhhhhhhc-ccCCChhhhhhhee
Q 039311 119 FGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIKRIPHVDIQKVLKVS-FDGLDDEEQNLFLD 197 (909)
Q Consensus 119 f~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~~~~~~~i~~~L~~s-y~~L~~~~k~cfl~ 197 (909)
... - + .+...++.+.|+|.|+++..++..+.+.... -......+...+...+.+.+.-. ++.||+..+..++.
T Consensus 200 ~~~-~-~---~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~ 273 (903)
T PRK04841 200 SSP-I-E---AAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLR 273 (903)
T ss_pred CCC-C-C---HHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 321 1 1 2456789999999999999999887643210 01112222222233455544333 78999999999999
Q ss_pred eeeccCCCCHHHHHHHHHhcCCCcccchhHhhhccccEE-eC---CeEEehHHHHHHHHHHhhhc
Q 039311 198 IASFFKGEDKDCVIKFLDGCGFSAEIGISVLVDKCLMVI-LN---NKIMMHDLLQEMGREIVRQE 258 (909)
Q Consensus 198 ~a~f~~~~~~~~li~~w~~~g~~~~~~i~~L~~~~li~~-~~---~~~~mhdll~e~~~~i~~~~ 258 (909)
.|++. ..+.+....+. +.. .+...++.+.+.+++.. .+ ..+.+|++++++.+.-...+
T Consensus 274 ~a~~~-~~~~~l~~~l~-~~~-~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~ 335 (903)
T PRK04841 274 CSVLR-SMNDALIVRVT-GEE-NGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWE 335 (903)
T ss_pred hcccc-cCCHHHHHHHc-CCC-cHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhc
Confidence 99986 34443333222 111 24567899999998653 22 25889999999988776433
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.56 E-value=8.9e-05 Score=54.67 Aligned_cols=39 Identities=31% Similarity=0.402 Sum_probs=24.3
Q ss_pred CCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecc
Q 039311 583 SLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIP 621 (909)
Q Consensus 583 ~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp 621 (909)
+|++|++++|++.++|..++++++|+.|++++|+++.++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666666666666666666666666554
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=1e-06 Score=99.55 Aligned_cols=95 Identities=26% Similarity=0.333 Sum_probs=42.9
Q ss_pred ccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCC--ccccccccccccc
Q 039311 342 LRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLS--LATNLESLNFQGC 418 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~--~l~~L~~L~L~~c 418 (909)
|...+.+.|.+..+.... -+..|+.|+|++|++.+.- .+..|++|++|||++|. +..+|.++ .| +|+.|++++|
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeeccc
Confidence 333344444444443333 2245555555555555443 44555555555555554 33444322 22 2555555554
Q ss_pred cccceecccccCCCcccEecccc
Q 039311 419 TCLLETHSSIQYLNKLVVLNLKH 441 (909)
Q Consensus 419 ~~l~~~p~~i~~L~~L~~L~L~~ 441 (909)
.. .++ ..|.+|++|+.||+++
T Consensus 243 ~l-~tL-~gie~LksL~~LDlsy 263 (1096)
T KOG1859|consen 243 AL-TTL-RGIENLKSLYGLDLSY 263 (1096)
T ss_pred HH-Hhh-hhHHhhhhhhccchhH
Confidence 32 111 2445555555555554
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.32 E-value=1.5e-05 Score=90.37 Aligned_cols=97 Identities=33% Similarity=0.419 Sum_probs=60.2
Q ss_pred ccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCc---cccCcceeecccc
Q 039311 410 LESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPE---LSCNIEELSLDGT 486 (909)
Q Consensus 410 L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~---~~~~L~~L~L~~~ 486 (909)
|.+.+.++ +.+..+..++.-++.|+.|||++|+ +........++.|++|||+.| .+..+|. ..+.|..|.+++|
T Consensus 166 L~~a~fsy-N~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 166 LATASFSY-NRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred Hhhhhcch-hhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccc-hhccccccchhhhhheeeeeccc
Confidence 44444444 3345555666666667777776643 444443334666777777663 2333333 3345777888888
Q ss_pred CccccCcccccCCCCCEEeccCCC
Q 039311 487 AIQEFPSSIERLSSLILLNLGNCL 510 (909)
Q Consensus 487 ~i~~lp~~i~~l~~L~~L~L~~c~ 510 (909)
.++++ ..+.+|.+|+.|++++|-
T Consensus 243 ~l~tL-~gie~LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 243 ALTTL-RGIENLKSLYGLDLSYNL 265 (1096)
T ss_pred HHHhh-hhHHhhhhhhccchhHhh
Confidence 88877 467888899999998873
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.28 E-value=0.00024 Score=52.40 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=34.5
Q ss_pred CCCcEEECCCCCCeecchhhccCCCCCEEeecCCCCCcccCC
Q 039311 605 SSRSILLLEKNNFERIPESIIQLSHLFSLGISHCERLHSLPE 646 (909)
Q Consensus 605 ~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c~~L~~lp~ 646 (909)
++|++|++++|+++.+|..+.+|++|+.|++++| .+++++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNN-PISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS-CCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCC-CCCCCcC
Confidence 5799999999999999988999999999999998 4666654
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.00012 Score=74.97 Aligned_cols=206 Identities=17% Similarity=0.151 Sum_probs=109.6
Q ss_pred cccccccccccccccc--ceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccCccccCcceeec
Q 039311 406 LATNLESLNFQGCTCL--LETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFPELSCNIEELSL 483 (909)
Q Consensus 406 ~l~~L~~L~L~~c~~l--~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L 483 (909)
.++.++.|+|.+|... .++..-+.+|+.|++|+|+.|.--.. ++.+|-...+|+.|-|
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--------------------I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--------------------IKSLPLPLKNLRVLVL 128 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc--------------------cccCcccccceEEEEE
Confidence 5677788888876543 23334455677777777776432111 2223322334455555
Q ss_pred cccCcc--ccCcccccCCCCCEEeccCCCCCCcC--cccccCC-CCCCeeecccccccccccCcceeecCccccccCCCC
Q 039311 484 DGTAIQ--EFPSSIERLSSLILLNLGNCLRLEGL--PSKICKL-KSLERLNLAEALKELKAEGIAIREVPSSIACLKNLG 558 (909)
Q Consensus 484 ~~~~i~--~lp~~i~~l~~L~~L~L~~c~~l~~l--p~~l~~L-~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~ 558 (909)
.|+.+. ...+.+..++.++.|.++.|....-. -..+... +.+++|++..|+..++.+-+.+.
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~------------- 195 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLS------------- 195 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHH-------------
Confidence 555443 44455666777777777766221100 0011111 12333333333222222111111
Q ss_pred eeecCccccccccccccCccCCCCCCCEEecCCCCCCCc--ccccCCCCCCcEEECCCCCCeecc--hhhccCCCCCEEe
Q 039311 559 RLSFESFMCHEQMGLLLPISFGLTSLTYLRLTDCGIIEL--PECLGQLSSRSILLLEKNNFERIP--ESIIQLSHLFSLG 634 (909)
Q Consensus 559 ~L~l~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~l~~l--p~~l~~l~~L~~L~L~~n~l~~lp--~~i~~l~~L~~L~ 634 (909)
..+|++..+-+..|.+.+. ......+|.+..|+|+.|++.++. +.+..++.|..|.
T Consensus 196 --------------------r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlR 255 (418)
T KOG2982|consen 196 --------------------RIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLR 255 (418)
T ss_pred --------------------hhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheee
Confidence 1256666677777766642 234556777788889888888554 3677889999999
Q ss_pred ecCCCCCcccCCCCCCcCceecccCccccccc
Q 039311 635 ISHCERLHSLPELPCDLSDIEAHCCSSLEALS 666 (909)
Q Consensus 635 L~~c~~L~~lp~l~~sL~~L~i~~C~~L~~l~ 666 (909)
++++|.+..+.. .--+.|-|...++++-+.
T Consensus 256 v~~~Pl~d~l~~--~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 256 VSENPLSDPLRG--GERRFLLIARLTKVQVLN 285 (418)
T ss_pred ccCCcccccccC--CcceEEEEeeccceEEec
Confidence 999887766643 112334444445444443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.99 E-value=0.00018 Score=85.93 Aligned_cols=100 Identities=25% Similarity=0.328 Sum_probs=65.9
Q ss_pred CcccEeccccccCccc-cCccc--cCCcCcEEEccCCCC----CcccCccccCcceeeccccCccccCcccccCCCCCEE
Q 039311 432 NKLVVLNLKHCRSLTS-LSTSI--HLGSLKKLILSGCSN----LMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILL 504 (909)
Q Consensus 432 ~~L~~L~L~~c~~l~~-lp~~~--~l~~L~~L~Ls~c~~----l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L 504 (909)
.+|++|+++|...+.. -|..+ .+|+|+.|.++|-.. ...+...++||..|++++++++.+ ..+++|++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 5677777766433211 11222 388888888887322 233455677889999999999988 788999999999
Q ss_pred eccCCCCCC-cCcccccCCCCCCeeeccc
Q 039311 505 NLGNCLRLE-GLPSKICKLKSLERLNLAE 532 (909)
Q Consensus 505 ~L~~c~~l~-~lp~~l~~L~~L~~L~l~~ 532 (909)
.+.+-.... ..-..+.+|++|+.||++.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~ 229 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISR 229 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccc
Confidence 887754332 1122356777888887754
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.00028 Score=72.44 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=16.3
Q ss_pred CCccEEEeeCCCCCccCCCC----CCCCeeEEEcCCCCc
Q 039311 340 TELRYLQWHGCPLKSLSSKI----PPENLVSLEMPHSSI 374 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~----~~~~L~~L~L~~~~i 374 (909)
..++.|++.+|.+......+ ++++|++|++++|.+
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcC
Confidence 44555555555544433322 344455555554443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.93 E-value=0.00024 Score=84.89 Aligned_cols=109 Identities=23% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCCCCEEeccCCCCCC-cCcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCccccccccccccC
Q 039311 498 LSSLILLNLGNCLRLE-GLPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLLP 576 (909)
Q Consensus 498 l~~L~~L~L~~c~~l~-~lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 576 (909)
||+|++|.+.+-.... ++.....++|+|..||+ +++.++.+ .+++.+++|+.|.+.+.... ....+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDI---------S~TnI~nl-~GIS~LknLq~L~mrnLe~e--~~~~l~ 214 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDI---------SGTNISNL-SGISRLKNLQVLSMRNLEFE--SYQDLI 214 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeec---------CCCCccCc-HHHhccccHHHHhccCCCCC--chhhHH
Confidence 5556666555532211 11222344555555554 44444444 45666667776666652111 112333
Q ss_pred ccCCCCCCCEEecCCCCCCCcc-------cccCCCCCCcEEECCCCCCe
Q 039311 577 ISFGLTSLTYLRLTDCGIIELP-------ECLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 577 ~~~~l~~L~~L~Ls~~~l~~lp-------~~l~~l~~L~~L~L~~n~l~ 618 (909)
.+..|.+|+.||+|.......+ +.-..||+|+.||.+++.+.
T Consensus 215 ~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 215 DLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 4666777888887776555322 22345778888888877665
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.62 E-value=0.0029 Score=61.85 Aligned_cols=100 Identities=18% Similarity=0.231 Sum_probs=52.3
Q ss_pred CCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCC-cccccccccccccccc--ceecccccCCCcccEec
Q 039311 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLS-LATNLESLNFQGCTCL--LETHSSIQYLNKLVVLN 438 (909)
Q Consensus 362 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~-~l~~L~~L~L~~c~~l--~~~p~~i~~L~~L~~L~ 438 (909)
.+...+||++|.+..++ .+..++.|.+|.|++|++...-|.+. .+++|..|.|.+|+.- +++ ..+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl-~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDL-DPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhc-chhccCCccceee
Confidence 35556666666665553 24556666666666666555555543 3455666666665431 111 2344555666666
Q ss_pred cccccCccccCcc-----ccCCcCcEEEccC
Q 039311 439 LKHCRSLTSLSTS-----IHLGSLKKLILSG 464 (909)
Q Consensus 439 L~~c~~l~~lp~~-----~~l~~L~~L~Ls~ 464 (909)
+-+|. ++....- ..+++|+.||..+
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehhh
Confidence 65543 2221111 1366777776655
No 60
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.43 E-value=0.00048 Score=80.48 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=18.3
Q ss_pred CCCCCEEecCCCcCCCcC---CCCCcccccccccccc
Q 039311 384 LVNLKHINLSHSEHLTKI---PDLSLATNLESLNFQG 417 (909)
Q Consensus 384 L~~L~~L~Ls~~~~l~~~---p~l~~l~~L~~L~L~~ 417 (909)
.+.|+.|.+..+...... +....+++|+.|++++
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 223 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG 223 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence 455666666655444431 2244556666666655
No 61
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.24 E-value=0.17 Score=53.99 Aligned_cols=154 Identities=12% Similarity=0.094 Sum_probs=88.2
Q ss_pred CChHHHHHHHHHHHhcCCCCcccCCccchHHHH----Hhh-CCCeEEEEEeCCCCHH--HHHHHhhccCC---CCCCCEE
Q 039311 12 GGLAHLRQILLSAILDDGNVSIGCPSIGLNFRS----KRL-SRKKVLIVFDDVSTSE--QMEFLIGNQGW---LMQGSRL 81 (909)
Q Consensus 12 ~~~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~----~~L-~~kr~LlVLDDv~~~~--~~~~l~~~~~~---~~~gSrI 81 (909)
.+..++.+.+...+. .+ .+..+.......+. ..+ .+++++||+||++... .++.+...... .+..-.|
T Consensus 82 ~~~~~~l~~i~~~lG-~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~v 159 (269)
T TIGR03015 82 VDAEDLLRMVAADFG-LE-TEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQI 159 (269)
T ss_pred CCHHHHHHHHHHHcC-CC-CCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEE
Confidence 345567777776653 21 11111112222332 322 6788999999998743 46655432221 1122244
Q ss_pred EEEeCCchhhhhc----------CCCcEEECCCCCHHHHHHHHHHhhcCCC-CCCchh-HHHHHHHHHHhCCCchHHHHH
Q 039311 82 IITARDKQVLKNC----------GVDTIYEVKELFDDDARMLFSRYAFGKN-YPNVGY-MELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 82 ivTTR~~~v~~~~----------~~~~~y~l~~L~~~es~~LF~~~af~~~-~~~~~~-~~l~~~iv~~c~GlPLal~~l 149 (909)
++|... ...... .+...+++++++.+|..+++...+-... .....+ .+..+.|++.++|.|..+..+
T Consensus 160 vl~g~~-~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l 238 (269)
T TIGR03015 160 FLVGQP-EFRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINIL 238 (269)
T ss_pred EEcCCH-HHHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHH
Confidence 555543 222111 1234689999999999998876653221 111112 478899999999999999988
Q ss_pred hHhhc------CC---CHHHHHHHHHHH
Q 039311 150 GRFLC------GR---RIKDWESTIKKI 168 (909)
Q Consensus 150 g~~L~------~~---~~~~W~~~l~~L 168 (909)
+..+. ++ +.+.++.++..+
T Consensus 239 ~~~~~~~a~~~~~~~i~~~~v~~~~~~~ 266 (269)
T TIGR03015 239 CDRLLLSAFLEEKREIGGEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 88771 21 455555555443
No 62
>PRK06893 DNA replication initiation factor; Validated
Probab=96.22 E-value=0.01 Score=61.73 Aligned_cols=131 Identities=18% Similarity=0.222 Sum_probs=77.5
Q ss_pred ChHHHHHHHHHHHhcC-CCCcccCC---ccchHHHHHhhCCCeEEEEEeCCCCH---HHHHH-HhhccCCC-CCCCEEEE
Q 039311 13 GLAHLRQILLSAILDD-GNVSIGCP---SIGLNFRSKRLSRKKVLIVFDDVSTS---EQMEF-LIGNQGWL-MQGSRLII 83 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~-~~~~~~~~---~~~~~~i~~~L~~kr~LlVLDDv~~~---~~~~~-l~~~~~~~-~~gSrIiv 83 (909)
|--+|.+.+..++... ......+. +.....+.+.+++ .-+|||||+|.. .+|+. +...+... ..|++|||
T Consensus 51 GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~-~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~ill 129 (229)
T PRK06893 51 GKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQ-QDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLL 129 (229)
T ss_pred CHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhhHHHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEE
Confidence 3356666666665421 12111111 1122233444443 248999999863 45653 22222221 24677766
Q ss_pred EeCC----------chhhhhcCCCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHH
Q 039311 84 TARD----------KQVLKNCGVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAI 146 (909)
Q Consensus 84 TTR~----------~~v~~~~~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal 146 (909)
||.+ +++...++...+++++++++++.++++.++|+...-.-+ .++..-+++++.|-.-++
T Consensus 130 its~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~--~~v~~~L~~~~~~d~r~l 200 (229)
T PRK06893 130 ISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS--DEVANFLLKRLDRDMHTL 200 (229)
T ss_pred EeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHhccCCHHHH
Confidence 6554 467777777789999999999999999999985542212 456677777777655433
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.19 E-value=0.0016 Score=66.29 Aligned_cols=82 Identities=26% Similarity=0.324 Sum_probs=44.4
Q ss_pred CCeeEEEcCCCCccccccccccCCCCCEEecCCC--cCCCcCCC-CCcccccccccccccccc-ceecccccCCCcccEe
Q 039311 362 ENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHS--EHLTKIPD-LSLATNLESLNFQGCTCL-LETHSSIQYLNKLVVL 437 (909)
Q Consensus 362 ~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~--~~l~~~p~-l~~l~~L~~L~L~~c~~l-~~~p~~i~~L~~L~~L 437 (909)
..|+.|++.+..++++ ..+..|++|++|.+|.| +....++. ...+|+|++|++++|.+- .+-...+..+.+|..|
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 3455555555444433 22445667777777776 44444443 345577777777776543 1112234555666666
Q ss_pred ccccccC
Q 039311 438 NLKHCRS 444 (909)
Q Consensus 438 ~L~~c~~ 444 (909)
++.+|..
T Consensus 122 dl~n~~~ 128 (260)
T KOG2739|consen 122 DLFNCSV 128 (260)
T ss_pred hcccCCc
Confidence 6666653
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.14 E-value=0.0083 Score=58.76 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=45.0
Q ss_pred eeEEEcCCCCccccccccc-cCCCCCEEecCCCcCCCcCCCCCccccccccccccccccceecccccCCCcccEeccccc
Q 039311 364 LVSLEMPHSSIKQLWKGVQ-RLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHC 442 (909)
Q Consensus 364 L~~L~L~~~~i~~lp~~~~-~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c 442 (909)
=+.++|++.++..+.. ++ -+.....+||++|. +..++.|..++.|.+|.+.+|....--|.--..+++|..|.|.+|
T Consensus 21 e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNd-l~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN 98 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN-LGATLDQFDAIDLTDND-LRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN 98 (233)
T ss_pred ccccccccccccchhh-ccccccccceecccccc-hhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCc
Confidence 3455555555443322 22 13456788888876 556677778888888888776544333322234555666666663
No 65
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.14 E-value=0.00054 Score=62.57 Aligned_cols=81 Identities=14% Similarity=0.165 Sum_probs=60.6
Q ss_pred CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccc
Q 039311 339 STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQ 416 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~ 416 (909)
..+|...++++|.++++|..| .+..++.|+|.+|.|..+|.++..++.|+.|+++.|.+...+.-+..+.+|-.|+..
T Consensus 52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 356777888888888888877 344788888888888888888888888888888888765544445556667777666
Q ss_pred ccc
Q 039311 417 GCT 419 (909)
Q Consensus 417 ~c~ 419 (909)
++.
T Consensus 132 ~na 134 (177)
T KOG4579|consen 132 ENA 134 (177)
T ss_pred CCc
Confidence 643
No 66
>PF05729 NACHT: NACHT domain
Probab=95.71 E-value=0.022 Score=55.71 Aligned_cols=70 Identities=24% Similarity=0.406 Sum_probs=50.0
Q ss_pred CCCeEEEEEeCCCCHHH---------HHHHh-hccCC-CCCCCEEEEEeCCchh---hhhcCCCcEEECCCCCHHHHHHH
Q 039311 48 SRKKVLIVFDDVSTSEQ---------MEFLI-GNQGW-LMQGSRLIITARDKQV---LKNCGVDTIYEVKELFDDDARML 113 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~~~---------~~~l~-~~~~~-~~~gSrIivTTR~~~v---~~~~~~~~~y~l~~L~~~es~~L 113 (909)
+.+++++|||++++... +..+. .-... ..++.+||||+|.... .........+++.++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 57899999999986443 22222 22221 3578999999999776 33344456899999999999999
Q ss_pred HHHh
Q 039311 114 FSRY 117 (909)
Q Consensus 114 F~~~ 117 (909)
+.++
T Consensus 159 ~~~~ 162 (166)
T PF05729_consen 159 LRKY 162 (166)
T ss_pred HHHH
Confidence 8654
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.67 E-value=0.00083 Score=68.21 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=25.7
Q ss_pred cCCcCcEEEccCCCCCcccCccccCcceeeccccCccccCcccccCCCCCEEeccCCC
Q 039311 453 HLGSLKKLILSGCSNLMSFPELSCNIEELSLDGTAIQEFPSSIERLSSLILLNLGNCL 510 (909)
Q Consensus 453 ~l~~L~~L~Ls~c~~l~~lp~~~~~L~~L~L~~~~i~~lp~~i~~l~~L~~L~L~~c~ 510 (909)
+++.|+..+||+|..-..+|+.+ -..|.+-+.|++|.|++|.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L----------------~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEEL----------------GDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cCCcceeeeccccccCcccchHH----------------HHHHhcCCCceeEEeecCC
Confidence 57777777777766555444322 1234556667777777664
No 68
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=95.59 E-value=0.0046 Score=62.95 Aligned_cols=185 Identities=20% Similarity=0.227 Sum_probs=92.5
Q ss_pred CCCccEEEeeCCCCCc-----cCCCC-CCCCeeEEEcCCCCcc----ccc-------cccccCCCCCEEecCCCcCCCcC
Q 039311 339 STELRYLQWHGCPLKS-----LSSKI-PPENLVSLEMPHSSIK----QLW-------KGVQRLVNLKHINLSHSEHLTKI 401 (909)
Q Consensus 339 ~~~Lr~L~l~~~~l~~-----lp~~~-~~~~L~~L~L~~~~i~----~lp-------~~~~~L~~L~~L~Ls~~~~l~~~ 401 (909)
+..+..++++||-+.. +...+ .-++|+..+++.-... +++ +.+-++++|+..+||+|-+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 5667777777775421 22222 3456666666643221 222 33446667777777776655554
Q ss_pred CC-----CCccccccccccccccccceecccccCCCcccEeccccccCccccCccccCCcCcEEEccCCCCCcccC----
Q 039311 402 PD-----LSLATNLESLNFQGCTCLLETHSSIQYLNKLVVLNLKHCRSLTSLSTSIHLGSLKKLILSGCSNLMSFP---- 472 (909)
Q Consensus 402 p~-----l~~l~~L~~L~L~~c~~l~~~p~~i~~L~~L~~L~L~~c~~l~~lp~~~~l~~L~~L~Ls~c~~l~~lp---- 472 (909)
|. ++..++|.+|.+.+|.....--.-|+. -|.+| ..+++. .+-+.|++.....|. +...|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~nKKa------a~kp~Le~vicgrNR-lengs~~~~ 177 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYNKKA------ADKPKLEVVICGRNR-LENGSKELS 177 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHHhhh------ccCCCceEEEeccch-hccCcHHHH
Confidence 42 455666666666665432111111110 01111 111111 124556666554432 22222
Q ss_pred ----ccccCcceeeccccCccc--c----CcccccCCCCCEEeccCCCCCCc----CcccccCCCCCCeeeccccc
Q 039311 473 ----ELSCNIEELSLDGTAIQE--F----PSSIERLSSLILLNLGNCLRLEG----LPSKICKLKSLERLNLAEAL 534 (909)
Q Consensus 473 ----~~~~~L~~L~L~~~~i~~--l----p~~i~~l~~L~~L~L~~c~~l~~----lp~~l~~L~~L~~L~l~~~l 534 (909)
+.-.+|+.+.+..|.|.. + -..+..+++|+.|+|.+|..... +...+...+.|+.|.+..|+
T Consensus 178 a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl 253 (388)
T COG5238 178 AALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL 253 (388)
T ss_pred HHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence 122467788888887761 1 12245678888888888755432 22334455556666665543
No 69
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.35 E-value=0.0013 Score=60.06 Aligned_cols=58 Identities=26% Similarity=0.275 Sum_probs=43.1
Q ss_pred CCCCCEEecCCCCCCCcccccCCCCCCcEEECCCCCCeecchhhccCCCCCEEeecCC
Q 039311 581 LTSLTYLRLTDCGIIELPECLGQLSSRSILLLEKNNFERIPESIIQLSHLFSLGISHC 638 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~i~~l~~L~~L~L~~c 638 (909)
++.++.|++++|.+.++|..+..++.|+.|+++.|.+...|..+..|.+|-.|+..++
T Consensus 76 f~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 76 FPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred cchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC
Confidence 4567777777777777777777777777777777777777777766777777776664
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.28 E-value=0.12 Score=56.30 Aligned_cols=146 Identities=17% Similarity=0.059 Sum_probs=88.3
Q ss_pred CCEEEEEeCCchhhhhc--CCCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhc-
Q 039311 78 GSRLIITARDKQVLKNC--GVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLC- 154 (909)
Q Consensus 78 gSrIivTTR~~~v~~~~--~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~- 154 (909)
..-|.+|||...+.... ....++++++++.+|..+++.+.+-.....-+ .+....|++.|+|.|-.+..++..+.
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~--~~al~~ia~~~~G~pR~~~~ll~~~~~ 207 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIE--PEAALEIARRSRGTPRIANRLLRRVRD 207 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcC--HHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 44566677765443331 12457899999999999999988754322111 35678899999999966555544321
Q ss_pred -----C-C--CHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhhe-eeeeccCC-CCHHHHHHHHHhcCCCcccc
Q 039311 155 -----G-R--RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFL-DIASFFKG-EDKDCVIKFLDGCGFSAEIG 224 (909)
Q Consensus 155 -----~-~--~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl-~~a~f~~~-~~~~~li~~w~~~g~~~~~~ 224 (909)
+ . +.+..+. ....+...|.+++.+++..+. .++.+..+ ...+.+...+...-...+..
T Consensus 208 ~a~~~~~~~it~~~v~~------------~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~ 275 (305)
T TIGR00635 208 FAQVRGQKIINRDIALK------------ALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDV 275 (305)
T ss_pred HHHHcCCCCcCHHHHHH------------HHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHh
Confidence 0 0 1222222 223356678899988877554 33444322 24555555554444445555
Q ss_pred hh-HhhhccccEEe
Q 039311 225 IS-VLVDKCLMVIL 237 (909)
Q Consensus 225 i~-~L~~~~li~~~ 237 (909)
++ .|++++||...
T Consensus 276 ~e~~Li~~~li~~~ 289 (305)
T TIGR00635 276 YEPYLLQIGFLQRT 289 (305)
T ss_pred hhHHHHHcCCcccC
Confidence 77 69999999754
No 71
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.91 E-value=0.52 Score=53.49 Aligned_cols=179 Identities=13% Similarity=0.031 Sum_probs=105.4
Q ss_pred ChHHHHHHHHHHHhcCCCC-cccCCccchHHHHHhhC--CCeEEEEEeCCCCHH------HHHHHhhccCCCCCCCE--E
Q 039311 13 GLAHLRQILLSAILDDGNV-SIGCPSIGLNFRSKRLS--RKKVLIVFDDVSTSE------QMEFLIGNQGWLMQGSR--L 81 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~~~~-~~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~~------~~~~l~~~~~~~~~gSr--I 81 (909)
+...+..+++.++.+.... ...+.++....+.+.++ ++.++||||+++... .+..+..... ...+++ |
T Consensus 98 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~-~~~~~~v~v 176 (394)
T PRK00411 98 TRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE-EYPGARIGV 176 (394)
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh-ccCCCeEEE
Confidence 4456777888888632211 12233455667777775 456899999998753 3444443322 223455 6
Q ss_pred EEEeCCchhhhhcC-------CCcEEECCCCCHHHHHHHHHHhh---cCCCCCC-chhHHHHHHHHHHhCCCchHHHHHh
Q 039311 82 IITARDKQVLKNCG-------VDTIYEVKELFDDDARMLFSRYA---FGKNYPN-VGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 82 ivTTR~~~v~~~~~-------~~~~y~l~~L~~~es~~LF~~~a---f~~~~~~-~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
|.+|.+..+..... ....+.+++++.++..+++...+ |.....+ +-...+++.+....|..+.|+.++-
T Consensus 177 I~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred EEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 77777765444321 12467899999999999998765 3222222 2334444444444566777877764
Q ss_pred Hhh-----cCC---CHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhheeee
Q 039311 151 RFL-----CGR---RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLDIA 199 (909)
Q Consensus 151 ~~L-----~~~---~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~~a 199 (909)
.+. ++. +.+..+.+++++. .....-.+.+||.++|..+..++
T Consensus 257 ~a~~~a~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~ 306 (394)
T PRK00411 257 RAGLIAEREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIV 306 (394)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHH
Confidence 432 222 5777777777662 12233457789988876554433
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.33 E-value=0.0068 Score=70.79 Aligned_cols=135 Identities=18% Similarity=0.167 Sum_probs=65.7
Q ss_pred CCCCCEEeccCCCCCCc--CcccccCCCCCCeeecccccccccccCcceeecCccccccCCCCeeecCcccccccccccc
Q 039311 498 LSSLILLNLGNCLRLEG--LPSKICKLKSLERLNLAEALKELKAEGIAIREVPSSIACLKNLGRLSFESFMCHEQMGLLL 575 (909)
Q Consensus 498 l~~L~~L~L~~c~~l~~--lp~~l~~L~~L~~L~l~~~l~~L~l~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~~~~~ 575 (909)
++.|+.|.+..|..... +-.....++.|+.|++..+.... .... .........+++|+.|+++. |....+..+
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~-~~~~~~~~~~~~L~~l~l~~--~~~isd~~l 261 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLI--TLSP-LLLLLLLSICRKLKSLDLSG--CGLVTDIGL 261 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCccccc--ccch-hHhhhhhhhcCCcCccchhh--hhccCchhH
Confidence 56777777777766554 22334556666666664320000 0000 00111233446666666666 444443333
Q ss_pred CccCC-CCCCCEEecCCCC-CCC--cccccCCCCCCcEEECCCCCCe---ecchhhccCCCCCEEeecC
Q 039311 576 PISFG-LTSLTYLRLTDCG-IIE--LPECLGQLSSRSILLLEKNNFE---RIPESIIQLSHLFSLGISH 637 (909)
Q Consensus 576 ~~~~~-l~~L~~L~Ls~~~-l~~--lp~~l~~l~~L~~L~L~~n~l~---~lp~~i~~l~~L~~L~L~~ 637 (909)
..+.. +++|+.|.+.+|. +++ +-.....+++|+.|+|++|... .+.....++++|+.|.+..
T Consensus 262 ~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~ 330 (482)
T KOG1947|consen 262 SALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS 330 (482)
T ss_pred HHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence 33222 5666776666665 332 3334455666666666665432 2333334455555444433
No 73
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.20 E-value=0.03 Score=57.36 Aligned_cols=84 Identities=24% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCCCCEEecCCCcCCCcCCCCCccccccccccccc--cccceecccccCCCcccEeccccccC--ccccCccccCCcCcE
Q 039311 384 LVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGC--TCLLETHSSIQYLNKLVVLNLKHCRS--LTSLSTSIHLGSLKK 459 (909)
Q Consensus 384 L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c--~~l~~~p~~i~~L~~L~~L~L~~c~~--l~~lp~~~~l~~L~~ 459 (909)
+..|+.|.+.++. ++.+..+..+++|++|.++.| .....++.....+++|++|++++|.. +..++....+.+|..
T Consensus 42 ~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 4445555555543 455566788899999999998 55666676777789999999999642 334444446778888
Q ss_pred EEccCCCCC
Q 039311 460 LILSGCSNL 468 (909)
Q Consensus 460 L~Ls~c~~l 468 (909)
|++..|...
T Consensus 121 Ldl~n~~~~ 129 (260)
T KOG2739|consen 121 LDLFNCSVT 129 (260)
T ss_pred hhcccCCcc
Confidence 888887643
No 74
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.80 E-value=0.0033 Score=64.24 Aligned_cols=53 Identities=26% Similarity=0.342 Sum_probs=24.0
Q ss_pred ccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccccccccCCCCCEEecCCC
Q 039311 342 LRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHS 395 (909)
Q Consensus 342 Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~ 395 (909)
.+.|+..|+.+..+.-...+..|++|.|+-|+|+.| ..+..+++|+.|.|..|
T Consensus 21 vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 21 VKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN 73 (388)
T ss_pred hhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc
Confidence 444555555555444333444455555555444444 22334444444444443
No 75
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=92.97 E-value=0.55 Score=51.78 Aligned_cols=152 Identities=16% Similarity=0.053 Sum_probs=89.7
Q ss_pred CCEEEEEeCCchhhhhc--CCCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcC
Q 039311 78 GSRLIITARDKQVLKNC--GVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCG 155 (909)
Q Consensus 78 gSrIivTTR~~~v~~~~--~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~ 155 (909)
.+-|..|||...+.... ....++++++++.++..+++.+.+-.....-+ .+....|++.|+|.|-.+..+...+.
T Consensus 151 ~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~--~~~~~~ia~~~~G~pR~a~~~l~~~~- 227 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEID--EEGALEIARRSRGTPRIANRLLRRVR- 227 (328)
T ss_pred ceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcC--HHHHHHHHHHcCCCchHHHHHHHHHH-
Confidence 34566777765444332 12357899999999999999988755432221 35688999999999965554444321
Q ss_pred CCHHHHHHHHHHHhcCCC---cchhhhhhhcccCCChhhhhhhe-eeeeccCCC-CHHHHHHHHHhcCCCcccchh-Hhh
Q 039311 156 RRIKDWESTIKKIKRIPH---VDIQKVLKVSFDGLDDEEQNLFL-DIASFFKGE-DKDCVIKFLDGCGFSAEIGIS-VLV 229 (909)
Q Consensus 156 ~~~~~W~~~l~~L~~~~~---~~i~~~L~~sy~~L~~~~k~cfl-~~a~f~~~~-~~~~li~~w~~~g~~~~~~i~-~L~ 229 (909)
.|..+-. -+.... ....+.+...|.+|+...+..+. ....|..+. ..+.+...+...--..+..++ .|+
T Consensus 228 ----~~a~~~~-~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li 302 (328)
T PRK00080 228 ----DFAQVKG-DGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLI 302 (328)
T ss_pred ----HHHHHcC-CCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHH
Confidence 1111100 000000 12344567778889888877664 444454443 555555544333334444566 899
Q ss_pred hccccEEe
Q 039311 230 DKCLMVIL 237 (909)
Q Consensus 230 ~~~li~~~ 237 (909)
+++||+..
T Consensus 303 ~~~li~~~ 310 (328)
T PRK00080 303 QQGFIQRT 310 (328)
T ss_pred HcCCcccC
Confidence 99999754
No 76
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=92.60 E-value=0.32 Score=50.32 Aligned_cols=109 Identities=20% Similarity=0.165 Sum_probs=58.1
Q ss_pred cchHHHHHhhC--CCeEEEEEeCCCCHH-------H-HHHHhhccCC--CCCCCEEEEEeCCchhhhh--------cCCC
Q 039311 38 IGLNFRSKRLS--RKKVLIVFDDVSTSE-------Q-MEFLIGNQGW--LMQGSRLIITARDKQVLKN--------CGVD 97 (909)
Q Consensus 38 ~~~~~i~~~L~--~kr~LlVLDDv~~~~-------~-~~~l~~~~~~--~~~gSrIivTTR~~~v~~~--------~~~~ 97 (909)
.....+.+.++ +++++||+||+.... . ...+...+.. ....-.+|+++-+..+... .+..
T Consensus 104 ~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~ 183 (234)
T PF01637_consen 104 SALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRF 183 (234)
T ss_dssp --HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT--
T ss_pred HHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCcccccc
Confidence 44455555554 356999999997655 1 2222222211 2233445566655555544 2333
Q ss_pred cEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHH
Q 039311 98 TIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 98 ~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~ 147 (909)
..+.+++++.+++++++...+-....- +.-.+-.++|...++|.|..|.
T Consensus 184 ~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~ 232 (234)
T PF01637_consen 184 SHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQ 232 (234)
T ss_dssp -EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHH
T ss_pred ceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence 469999999999999998864332110 1123456999999999998775
No 77
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.57 E-value=0.0043 Score=63.41 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=71.0
Q ss_pred CCCCcEEEEecCCCCcCcceeecCCCCCCCCccEEEeeCCCCCccCCCCCCCCeeEEEcCCCCccccc--cccccCCCCC
Q 039311 311 MHKLRFFKFYSSHYGENVNKVHNFRGLESTELRYLQWHGCPLKSLSSKIPPENLVSLEMPHSSIKQLW--KGVQRLVNLK 388 (909)
Q Consensus 311 ~~~Lr~L~l~~~~~~~~~~~~~~~~~l~~~~Lr~L~l~~~~l~~lp~~~~~~~L~~L~L~~~~i~~lp--~~~~~L~~L~ 388 (909)
+.+.+.|++.++.+.+ +.+- .+++.|.+|.|+-|.+++|.+.-.+.+|++|.|+.|.|..+- .-++++++|+
T Consensus 18 l~~vkKLNcwg~~L~D----Isic--~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD----ISIC--EKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccH----HHHH--HhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 4455566666543322 1110 127889999999999999988889999999999999998775 3478899999
Q ss_pred EEecCCCcCCCcCCC------CCccccccccc
Q 039311 389 HINLSHSEHLTKIPD------LSLATNLESLN 414 (909)
Q Consensus 389 ~L~Ls~~~~l~~~p~------l~~l~~L~~L~ 414 (909)
+|.|..|.-.+.-+. +..+|||+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999988876665542 44567777766
No 78
>PF13173 AAA_14: AAA domain
Probab=92.56 E-value=0.16 Score=47.39 Aligned_cols=71 Identities=15% Similarity=0.060 Sum_probs=53.6
Q ss_pred hHHHHHhhCCCeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCchhhhhc------CCCcEEECCCCCHHHH
Q 039311 40 LNFRSKRLSRKKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNC------GVDTIYEVKELFDDDA 110 (909)
Q Consensus 40 ~~~i~~~L~~kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~------~~~~~y~l~~L~~~es 110 (909)
.+.+.+....++.+|+||+|....+|......+-..++..+||+|+.....+..- |....++|.+|+..|.
T Consensus 51 ~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 51 LEYFLELIKPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHHHHhhccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3455555555789999999999999888777666566778999999988776431 2235789999998874
No 79
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.10 E-value=0.059 Score=33.03 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=8.4
Q ss_pred CcEEECCCCCCeecchh
Q 039311 607 RSILLLEKNNFERIPES 623 (909)
Q Consensus 607 L~~L~L~~n~l~~lp~~ 623 (909)
|++|+|++|+++.+|.+
T Consensus 2 L~~Ldls~n~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS 18 (22)
T ss_dssp ESEEEETSSEESEEGTT
T ss_pred ccEEECCCCcCEeCChh
Confidence 44455555555555544
No 80
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.07 E-value=0.08 Score=32.44 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=11.2
Q ss_pred CeeEEEcCCCCccccccccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQ 382 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~ 382 (909)
+|++|++++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35556666666655555543
No 81
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.68 E-value=2.7 Score=46.90 Aligned_cols=96 Identities=10% Similarity=0.019 Sum_probs=64.5
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++.++|+||++.. ...+.|...+..-..+..+|++|.+.+ +.... ..-..+.+.+++.++..++....... .+
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~--~~ 217 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD--LP 217 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc--CC
Confidence 45668999999753 446666666654445677777777664 33322 22358999999999999999775311 11
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
+ ..+ ..++..++|.|+.+..+.
T Consensus 218 -~--~~~-~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 218 -D--DPR-AALAALAEGSVGRALRLA 239 (365)
T ss_pred -H--HHH-HHHHHHcCCCHHHHHHHh
Confidence 1 122 678999999998766553
No 82
>PRK09087 hypothetical protein; Validated
Probab=90.57 E-value=2.8 Score=43.41 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=59.5
Q ss_pred EEEEeCCCC----HHHHHHHhhccCCCCCCCEEEEEeC---------CchhhhhcCCCcEEECCCCCHHHHHHHHHHhhc
Q 039311 53 LIVFDDVST----SEQMEFLIGNQGWLMQGSRLIITAR---------DKQVLKNCGVDTIYEVKELFDDDARMLFSRYAF 119 (909)
Q Consensus 53 LlVLDDv~~----~~~~~~l~~~~~~~~~gSrIivTTR---------~~~v~~~~~~~~~y~l~~L~~~es~~LF~~~af 119 (909)
+|+||||.. .+.+-.+..... ..|..||+|++ ..++...+....+++++++++++-.+++.+++-
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~ 167 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFA 167 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHH
Confidence 788899954 223333332222 24677888886 345566666678999999999999999988874
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCchHHH
Q 039311 120 GKNYPNVGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 120 ~~~~~~~~~~~l~~~iv~~c~GlPLal~ 147 (909)
...-.-+ .++..-|++.+.|..-++.
T Consensus 168 ~~~~~l~--~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 168 DRQLYVD--PHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HcCCCCC--HHHHHHHHHHhhhhHHHHH
Confidence 3221111 4566777777777665554
No 83
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=89.90 E-value=7 Score=43.73 Aligned_cols=178 Identities=16% Similarity=0.100 Sum_probs=97.5
Q ss_pred ChHHHHHHHHHHHhc-CCCC--cccCCccchHHHHHhhC--CCeEEEEEeCCCCHH-----HHHHHhhccCC-CCCCC--
Q 039311 13 GLAHLRQILLSAILD-DGNV--SIGCPSIGLNFRSKRLS--RKKVLIVFDDVSTSE-----QMEFLIGNQGW-LMQGS-- 79 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~-~~~~--~~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~~-----~~~~l~~~~~~-~~~gS-- 79 (909)
+...+..+++.++.+ +... ...+..+....+.+.+. +++++||||+++... .+..+.....+ ..+++
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v 166 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKV 166 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeE
Confidence 456777888888852 1111 11122233455666663 568999999998762 13333322111 12223
Q ss_pred EEEEEeCCchhhhhcC-------CCcEEECCCCCHHHHHHHHHHhhc---CCCCCCchhHHHHHHHHHHhCCCc-hHHHH
Q 039311 80 RLIITARDKQVLKNCG-------VDTIYEVKELFDDDARMLFSRYAF---GKNYPNVGYMELSNKIIKYAKGVP-LAIKV 148 (909)
Q Consensus 80 rIivTTR~~~v~~~~~-------~~~~y~l~~L~~~es~~LF~~~af---~~~~~~~~~~~l~~~iv~~c~GlP-Lal~~ 148 (909)
.+|.+|.+........ ....+++++.+.++..+++...+- .....+++..+...+++....|.| .|+.+
T Consensus 167 ~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~ 246 (365)
T TIGR02928 167 GVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDL 246 (365)
T ss_pred EEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHH
Confidence 4566665554322221 125688999999999999987753 222233444455666777777887 44433
Q ss_pred HhHhh-----cC---CCHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhhhee
Q 039311 149 LGRFL-----CG---RRIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNLFLD 197 (909)
Q Consensus 149 lg~~L-----~~---~~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~cfl~ 197 (909)
+-.+. .+ .+.+..+.+.+.+.. ....-+..+||.++|..+..
T Consensus 247 l~~a~~~a~~~~~~~it~~~v~~a~~~~~~-------~~~~~~i~~l~~~~~~~l~a 296 (365)
T TIGR02928 247 LRVAGEIAEREGAERVTEDHVEKAQEKIEK-------DRLLELIRGLPTHSKLVLLA 296 (365)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-------HHHHHHHHcCCHHHHHHHHH
Confidence 32221 12 256666666665521 22233456788877765543
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=89.70 E-value=1.6 Score=40.31 Aligned_cols=83 Identities=20% Similarity=0.361 Sum_probs=31.2
Q ss_pred eCcccccCCCCCcEEEEecCCCCcCcceeecCCCCC-CCCccEEEeeCCCCCccCCCC--CCCCeeEEEcCCCCcccccc
Q 039311 303 LNAGSFTNMHKLRFFKFYSSHYGENVNKVHNFRGLE-STELRYLQWHGCPLKSLSSKI--PPENLVSLEMPHSSIKQLWK 379 (909)
Q Consensus 303 ~~~~~f~~~~~Lr~L~l~~~~~~~~~~~~~~~~~l~-~~~Lr~L~l~~~~l~~lp~~~--~~~~L~~L~L~~~~i~~lp~ 379 (909)
+...+|.++++|+.+.+... .. .+. ...+. ...|+.+.+.++ +..++... ....|+.+.+.+ .+..++.
T Consensus 3 i~~~~F~~~~~l~~i~~~~~-~~----~I~-~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~ 74 (129)
T PF13306_consen 3 IGNNAFYNCSNLESITFPNT-IK----KIG-ENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGD 74 (129)
T ss_dssp E-TTTTTT-TT--EEEETST-------EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-T
T ss_pred ECHHHHhCCCCCCEEEECCC-ee----EeC-hhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccc
Confidence 44567777777777776521 10 110 11122 334555555443 44444322 333455555543 3333332
Q ss_pred -ccccCCCCCEEecC
Q 039311 380 -GVQRLVNLKHINLS 393 (909)
Q Consensus 380 -~~~~L~~L~~L~Ls 393 (909)
.+..+++|+.+++.
T Consensus 75 ~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTTT-TTECEEEET
T ss_pred ccccccccccccccC
Confidence 22334555555543
No 85
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.42 E-value=0.2 Score=28.55 Aligned_cols=7 Identities=29% Similarity=0.411 Sum_probs=2.5
Q ss_pred CEEeecC
Q 039311 631 FSLGISH 637 (909)
Q Consensus 631 ~~L~L~~ 637 (909)
+.|+|++
T Consensus 4 ~~L~l~~ 10 (17)
T PF13504_consen 4 RTLDLSN 10 (17)
T ss_dssp SEEEETS
T ss_pred CEEECCC
Confidence 3333333
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.44 E-value=0.31 Score=27.75 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=5.0
Q ss_pred CCCEEecCCCCCCC
Q 039311 583 SLTYLRLTDCGIIE 596 (909)
Q Consensus 583 ~L~~L~Ls~~~l~~ 596 (909)
+|+.|+|++|++.+
T Consensus 2 ~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 2 NLRTLDLSNNRLTS 15 (17)
T ss_dssp T-SEEEETSS--SS
T ss_pred ccCEEECCCCCCCC
Confidence 34444444444433
No 87
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=87.68 E-value=0.39 Score=28.50 Aligned_cols=20 Identities=55% Similarity=1.077 Sum_probs=17.6
Q ss_pred CeeEEEcCCCCccccccccc
Q 039311 363 NLVSLEMPHSSIKQLWKGVQ 382 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~~~~ 382 (909)
+|+.|+|+++++++||++.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999998753
No 88
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=87.46 E-value=1.6 Score=45.12 Aligned_cols=96 Identities=17% Similarity=0.203 Sum_probs=57.2
Q ss_pred EEEEEeCCCCHH---H-HHHHhhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCcEEECCCCCHHHHHHHHHHh
Q 039311 52 VLIVFDDVSTSE---Q-MEFLIGNQGW-LMQGSRLIITARDK---------QVLKNCGVDTIYEVKELFDDDARMLFSRY 117 (909)
Q Consensus 52 ~LlVLDDv~~~~---~-~~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~y~l~~L~~~es~~LF~~~ 117 (909)
-+||||||+... . .+.+...+.. ...+.+||+||+.. .+...+.....+++.++++++-..++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 389999997543 2 2334332221 12345899988753 22223333468999999999999988765
Q ss_pred hcCCCCCCchhHHHHHHHHHHhCCCchHHHHH
Q 039311 118 AFGKNYPNVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 118 af~~~~~~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
+-+...+-+ .+..+.+++.+.|.|..+..+
T Consensus 172 ~~~~~~~~~--~~~l~~L~~~~~gn~r~L~~~ 201 (226)
T TIGR03420 172 AARRGLQLP--DEVADYLLRHGSRDMGSLMAL 201 (226)
T ss_pred HHHcCCCCC--HHHHHHHHHhccCCHHHHHHH
Confidence 432221111 244566777788877666554
No 89
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=86.96 E-value=4.8 Score=44.00 Aligned_cols=94 Identities=14% Similarity=0.231 Sum_probs=63.6
Q ss_pred CeEEEEEeCC--CCHHHHHHHhhccCCCCCCCEEEEEeCCchhh-hhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDV--STSEQMEFLIGNQGWLMQGSRLIITARDKQVL-KNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv--~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
++=++|+||+ .+.+.++.|...+..-.+++.+|++|.+.+.+ ... ..-.++++.++++++..+..... +++..
T Consensus 93 ~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~-~~~~~-- 169 (313)
T PRK05564 93 DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYK-YNDIK-- 169 (313)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHH-hcCCC--
Confidence 4445555555 56677999999888777899999998765422 221 12358999999999987766543 32111
Q ss_pred chhHHHHHHHHHHhCCCchHHHHH
Q 039311 126 VGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
.+.++.++.+++|.|..+...
T Consensus 170 ---~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 170 ---EEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred ---HHHHHHHHHHcCCCHHHHHHH
Confidence 233678899999998766544
No 90
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=86.62 E-value=5.1 Score=48.21 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=134.3
Q ss_pred CChHHHHHHHHHHHhcCCCCcc------------cCCccchHHHHHhhC--CCeEEEEEeCCCCHH------HHHHHhhc
Q 039311 12 GGLAHLRQILLSAILDDGNVSI------------GCPSIGLNFRSKRLS--RKKVLIVFDDVSTSE------QMEFLIGN 71 (909)
Q Consensus 12 ~~~~~l~~~ll~~i~~~~~~~~------------~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~~------~~~~l~~~ 71 (909)
.+..++.+.++..|..-..... .+.......+...|. .+...+||||-.-.. .++.+...
T Consensus 77 ndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~ 156 (894)
T COG2909 77 NDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH 156 (894)
T ss_pred CCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh
Confidence 4666777777777752111111 122234445555554 367899999975322 24444443
Q ss_pred cCCCCCCCEEEEEeCCch---hhhhcCCCcEEECC----CCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCch
Q 039311 72 QGWLMQGSRLIITARDKQ---VLKNCGVDTIYEVK----ELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 72 ~~~~~~gSrIivTTR~~~---v~~~~~~~~~y~l~----~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPL 144 (909)
. .+|=..|||||..- +++.--.+...++. .++.+|+-++|...-. ..-. ..=++.+.++..|-+-
T Consensus 157 ~---P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~-l~Ld----~~~~~~L~~~teGW~~ 228 (894)
T COG2909 157 A---PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGS-LPLD----AADLKALYDRTEGWAA 228 (894)
T ss_pred C---CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCC-CCCC----hHHHHHHHhhcccHHH
Confidence 3 47889999999973 33222123445555 5889999999976631 1111 1225677777888888
Q ss_pred HHHHHhHhhcCC-CHHHHHHHHHHHhcCCCcchhh-hhhhcccCCChhhhhhheeeeeccCCCCHHHHHHHHHhcCCCcc
Q 039311 145 AIKVLGRFLCGR-RIKDWESTIKKIKRIPHVDIQK-VLKVSFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSAE 222 (909)
Q Consensus 145 al~~lg~~L~~~-~~~~W~~~l~~L~~~~~~~i~~-~L~~sy~~L~~~~k~cfl~~a~f~~~~~~~~li~~w~~~g~~~~ 222 (909)
|+..++=.+++. +.+.--..+. .. .+.+.+ ...=-+|.||+++|.-.+-+|.+..- -+.++.-+.+.+ .+.
T Consensus 229 al~L~aLa~~~~~~~~q~~~~Ls---G~-~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f--~~eL~~~Ltg~~-ng~ 301 (894)
T COG2909 229 ALQLIALALRNNTSAEQSLRGLS---GA-ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF--NDELCNALTGEE-NGQ 301 (894)
T ss_pred HHHHHHHHccCCCcHHHHhhhcc---ch-HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh--hHHHHHHHhcCC-cHH
Confidence 888777777732 3222111111 00 111111 11112578999999888878777432 233333333322 244
Q ss_pred cchhHhhhccccEEe----CCeEEehHHHHHHHHHHhhhc
Q 039311 223 IGISVLVDKCLMVIL----NNKIMMHDLLQEMGREIVRQE 258 (909)
Q Consensus 223 ~~i~~L~~~~li~~~----~~~~~mhdll~e~~~~i~~~~ 258 (909)
..+++|..++|+-.. .+-+..|.+..|+-+.-.+.+
T Consensus 302 amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 302 AMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 568999999988754 456999999999877655543
No 91
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=85.92 E-value=2.8 Score=46.99 Aligned_cols=90 Identities=16% Similarity=0.182 Sum_probs=57.2
Q ss_pred CeEEEEEeCCCCH-------------H---HHHHHhhccCCC--CCCCEEEEEeCCch-----hhhhcCCCcEEECCCCC
Q 039311 50 KKVLIVFDDVSTS-------------E---QMEFLIGNQGWL--MQGSRLIITARDKQ-----VLKNCGVDTIYEVKELF 106 (909)
Q Consensus 50 kr~LlVLDDv~~~-------------~---~~~~l~~~~~~~--~~gSrIivTTR~~~-----v~~~~~~~~~y~l~~L~ 106 (909)
...+|+|||++.. + .+..+...+..+ ..+.+||.||...+ +......+..+++...+
T Consensus 215 ~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~ 294 (364)
T TIGR01242 215 APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPD 294 (364)
T ss_pred CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcC
Confidence 4579999999753 1 133333333322 24678888988543 33222346789999999
Q ss_pred HHHHHHHHHHhhcCCCCC-CchhHHHHHHHHHHhCCCc
Q 039311 107 DDDARMLFSRYAFGKNYP-NVGYMELSNKIIKYAKGVP 143 (909)
Q Consensus 107 ~~es~~LF~~~af~~~~~-~~~~~~l~~~iv~~c~GlP 143 (909)
.++..++|..++.+.... +.++ ..+++.+.|..
T Consensus 295 ~~~r~~Il~~~~~~~~l~~~~~~----~~la~~t~g~s 328 (364)
T TIGR01242 295 FEGRLEILKIHTRKMKLAEDVDL----EAIAKMTEGAS 328 (364)
T ss_pred HHHHHHHHHHHHhcCCCCccCCH----HHHHHHcCCCC
Confidence 999999999998765533 2344 44555566653
No 92
>PRK13342 recombination factor protein RarA; Reviewed
Probab=85.00 E-value=8.1 Score=44.10 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=62.3
Q ss_pred CCCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEE--eCCch--hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcC
Q 039311 48 SRKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIIT--ARDKQ--VLKNC-GVDTIYEVKELFDDDARMLFSRYAFG 120 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivT--TR~~~--v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~ 120 (909)
.+++.+|+||+|+.. .+.+.+..... .|..++|. |.+.. +.... ..-.++++++++.++..+++.+.+-.
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHH
Confidence 357889999999854 45666666544 35655553 33321 11111 11268999999999999999876532
Q ss_pred CCCCC-chhHHHHHHHHHHhCCCchHHHHHh
Q 039311 121 KNYPN-VGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 121 ~~~~~-~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
..... .--.+....++++|+|.+..+..+-
T Consensus 167 ~~~~~i~i~~~al~~l~~~s~Gd~R~aln~L 197 (413)
T PRK13342 167 KERGLVELDDEALDALARLANGDARRALNLL 197 (413)
T ss_pred hhcCCCCCCHHHHHHHHHhCCCCHHHHHHHH
Confidence 11100 1114567888999999987665443
No 93
>PRK08727 hypothetical protein; Validated
Probab=84.85 E-value=2.8 Score=43.59 Aligned_cols=92 Identities=13% Similarity=0.074 Sum_probs=57.1
Q ss_pred eEEEEEeCCCCH---HHHHH-HhhccCC-CCCCCEEEEEeCC---------chhhhhcCCCcEEECCCCCHHHHHHHHHH
Q 039311 51 KVLIVFDDVSTS---EQMEF-LIGNQGW-LMQGSRLIITARD---------KQVLKNCGVDTIYEVKELFDDDARMLFSR 116 (909)
Q Consensus 51 r~LlVLDDv~~~---~~~~~-l~~~~~~-~~~gSrIivTTR~---------~~v~~~~~~~~~y~l~~L~~~es~~LF~~ 116 (909)
--+|||||+... .+|+. +...+.. ..+|..||+||+. +++...++...+++++++++++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 348999999743 23332 2221111 2356779999984 23333444456899999999999999998
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhCCCch
Q 039311 117 YAFGKNYPNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 117 ~af~~~~~~~~~~~l~~~iv~~c~GlPL 144 (909)
+|....-.-+ .+...-+++.+.|-.-
T Consensus 174 ~a~~~~l~l~--~e~~~~La~~~~rd~r 199 (233)
T PRK08727 174 RAQRRGLALD--EAAIDWLLTHGERELA 199 (233)
T ss_pred HHHHcCCCCC--HHHHHHHHHhCCCCHH
Confidence 8764332111 3556677777766543
No 94
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.03 E-value=2.5 Score=38.99 Aligned_cols=73 Identities=29% Similarity=0.435 Sum_probs=24.7
Q ss_pred CeeEEEcCCCCcccccc-ccccCCCCCEEecCCCcCCCcCCC--CCccccccccccccccccceec-ccccCCCcccEec
Q 039311 363 NLVSLEMPHSSIKQLWK-GVQRLVNLKHINLSHSEHLTKIPD--LSLATNLESLNFQGCTCLLETH-SSIQYLNKLVVLN 438 (909)
Q Consensus 363 ~L~~L~L~~~~i~~lp~-~~~~L~~L~~L~Ls~~~~l~~~p~--l~~l~~L~~L~L~~c~~l~~~p-~~i~~L~~L~~L~ 438 (909)
+|+.+.+.. .++.++. .+..+.+|+.+.+.++ ...+++ +..+++|+.+.+.. ....++ ..+..+++|+.++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN--LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST--TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc--ccccceeeeecccccccccccc--cccccccccccccccccccc
Confidence 444444442 3334432 2334444555555442 233332 44444455555533 112222 2333455555555
Q ss_pred cc
Q 039311 439 LK 440 (909)
Q Consensus 439 L~ 440 (909)
+.
T Consensus 88 ~~ 89 (129)
T PF13306_consen 88 IP 89 (129)
T ss_dssp ET
T ss_pred cC
Confidence 53
No 95
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.96 E-value=1.2 Score=28.43 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=14.2
Q ss_pred CCCCcEEECCCCCCeecchhh
Q 039311 604 LSSRSILLLEKNNFERIPESI 624 (909)
Q Consensus 604 l~~L~~L~L~~n~l~~lp~~i 624 (909)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777543
No 96
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.96 E-value=1.2 Score=28.43 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=14.2
Q ss_pred CCCCcEEECCCCCCeecchhh
Q 039311 604 LSSRSILLLEKNNFERIPESI 624 (909)
Q Consensus 604 l~~L~~L~L~~n~l~~lp~~i 624 (909)
+++|+.|+|++|+++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777777543
No 97
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=81.57 E-value=7.6 Score=38.80 Aligned_cols=89 Identities=13% Similarity=0.169 Sum_probs=62.7
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+.+-+||+||++.. +.++.+...+....+.+.+|++|++. .+.... ....++++.+++.++..+...+. + .
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---i 169 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---I 169 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C---C
Confidence 45668999999754 44777777776656677788877654 333322 12358999999999998888776 2 1
Q ss_pred CchhHHHHHHHHHHhCCCchH
Q 039311 125 NVGYMELSNKIIKYAKGVPLA 145 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLa 145 (909)
+ .+.+..+++.++|.|..
T Consensus 170 ~---~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 170 S---EEAAELLLALAGGSPGA 187 (188)
T ss_pred C---HHHHHHHHHHcCCCccc
Confidence 1 35688999999998753
No 98
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.11 E-value=13 Score=43.49 Aligned_cols=96 Identities=8% Similarity=0.099 Sum_probs=64.9
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-+||||+++.. ..++.|...+........+|++|.. +.+.... .....|++.+++.++..+.+.+.+-+....
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~ 194 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGRE 194 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999854 4577777777655556666666543 3443333 223589999999999999998877543322
Q ss_pred CchhHHHHHHHHHHhCCCchHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAI 146 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal 146 (909)
.+ .+....|++.++|.+--+
T Consensus 195 i~--~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 195 AE--PEALQLVARLADGAMRDA 214 (504)
T ss_pred CC--HHHHHHHHHHcCCCHHHH
Confidence 11 356788899999987433
No 99
>PRK08084 DNA replication initiation factor; Provisional
Probab=80.44 E-value=5.2 Score=41.70 Aligned_cols=91 Identities=19% Similarity=0.219 Sum_probs=56.2
Q ss_pred EEEEEeCCCCH---HHHHHHh-hccCC-CCCC-CEEEEEeCCc---------hhhhhcCCCcEEECCCCCHHHHHHHHHH
Q 039311 52 VLIVFDDVSTS---EQMEFLI-GNQGW-LMQG-SRLIITARDK---------QVLKNCGVDTIYEVKELFDDDARMLFSR 116 (909)
Q Consensus 52 ~LlVLDDv~~~---~~~~~l~-~~~~~-~~~g-SrIivTTR~~---------~v~~~~~~~~~y~l~~L~~~es~~LF~~ 116 (909)
-+|+||||... .+|+... ..+.. ...| .+||+||+.. ++...++...+++++++++++-.+.+.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 37899999653 3454322 11111 1134 3789998743 4455556667999999999999999887
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhCCCch
Q 039311 117 YAFGKNYPNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 117 ~af~~~~~~~~~~~l~~~iv~~c~GlPL 144 (909)
+|-...-.- -.++..-+++.+.|-.-
T Consensus 179 ~a~~~~~~l--~~~v~~~L~~~~~~d~r 204 (235)
T PRK08084 179 RARLRGFEL--PEDVGRFLLKRLDREMR 204 (235)
T ss_pred HHHHcCCCC--CHHHHHHHHHhhcCCHH
Confidence 664332111 14566677777766543
No 100
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=80.36 E-value=9.6 Score=42.28 Aligned_cols=98 Identities=12% Similarity=0.126 Sum_probs=63.4
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+++.. ...+.|...+.....+..+|++|.. ..+.... ..-..+++.+++.++..+...+.+.... .
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~-~ 218 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG-S 218 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC-C
Confidence 46678999999854 4466666655544445555555543 3343322 1125899999999999999987432211 1
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
-.+....+++.++|.|..+..+.
T Consensus 219 ---~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 219 ---DGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 13446789999999998766554
No 101
>PRK05642 DNA replication initiation factor; Validated
Probab=79.33 E-value=6.4 Score=40.96 Aligned_cols=101 Identities=17% Similarity=0.166 Sum_probs=59.9
Q ss_pred HHHHhhCCCeEEEEEeCCCCH---HHHHH-HhhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCcEEECCCCCH
Q 039311 42 FRSKRLSRKKVLIVFDDVSTS---EQMEF-LIGNQGW-LMQGSRLIITARDK---------QVLKNCGVDTIYEVKELFD 107 (909)
Q Consensus 42 ~i~~~L~~kr~LlVLDDv~~~---~~~~~-l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~y~l~~L~~ 107 (909)
.+.+.+++-. +||+|||... .+|+. +...+.. ...|.+||+||+.. ++...++...+++++++++
T Consensus 90 ~~~~~~~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~ 168 (234)
T PRK05642 90 ELLDNLEQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSD 168 (234)
T ss_pred HHHHhhhhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCH
Confidence 3444444333 6788999633 34543 3332221 23567788888643 2222334456899999999
Q ss_pred HHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchH
Q 039311 108 DDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLA 145 (909)
Q Consensus 108 ~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLa 145 (909)
++-.+....+|......-+ .++..-+++++.|-.-+
T Consensus 169 e~~~~il~~ka~~~~~~l~--~ev~~~L~~~~~~d~r~ 204 (234)
T PRK05642 169 EDKLRALQLRASRRGLHLT--DEVGHFILTRGTRSMSA 204 (234)
T ss_pred HHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHH
Confidence 9999999877754322111 36667777777665433
No 102
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=79.24 E-value=9.4 Score=44.48 Aligned_cols=97 Identities=13% Similarity=0.087 Sum_probs=65.2
Q ss_pred CCCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEE-EeCCchhhhhcC-CCcEEECCCCCHHHHHHHHHHhhcCCCC
Q 039311 48 SRKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLII-TARDKQVLKNCG-VDTIYEVKELFDDDARMLFSRYAFGKNY 123 (909)
Q Consensus 48 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIiv-TTR~~~v~~~~~-~~~~y~l~~L~~~es~~LF~~~af~~~~ 123 (909)
.+++-++|+|+++. ...++.|...+....+..++|+ ||+.+.+..... .-..+++++++.++..+.+.+.+-..+.
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 35677899999986 4558888877765556667665 455555554432 2357999999999999999887754332
Q ss_pred CCchhHHHHHHHHHHhCCCchHH
Q 039311 124 PNVGYMELSNKIIKYAKGVPLAI 146 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlPLal 146 (909)
..+ .+....|++.++|.+--+
T Consensus 206 ~ie--~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 206 KTD--IEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCC--HHHHHHHHHHcCCCHHHH
Confidence 111 244566888898876433
No 103
>PRK06620 hypothetical protein; Validated
Probab=78.91 E-value=6.1 Score=40.50 Aligned_cols=87 Identities=8% Similarity=0.036 Sum_probs=52.2
Q ss_pred eEEEEEeCCCCHHH--HHHHhhccCCCCCCCEEEEEeCCc-------hhhhhcCCCcEEECCCCCHHHHHHHHHHhhcCC
Q 039311 51 KVLIVFDDVSTSEQ--MEFLIGNQGWLMQGSRLIITARDK-------QVLKNCGVDTIYEVKELFDDDARMLFSRYAFGK 121 (909)
Q Consensus 51 r~LlVLDDv~~~~~--~~~l~~~~~~~~~gSrIivTTR~~-------~v~~~~~~~~~y~l~~L~~~es~~LF~~~af~~ 121 (909)
.-+|++|||+...+ +-.+..... ..|..||+|++.. ++...+...-+++++++++++-.++..+.+-..
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHc
Confidence 35788999975432 222222121 3567899998743 233344455689999999999888887766422
Q ss_pred C-CCCchhHHHHHHHHHHhCCC
Q 039311 122 N-YPNVGYMELSNKIIKYAKGV 142 (909)
Q Consensus 122 ~-~~~~~~~~l~~~iv~~c~Gl 142 (909)
. ..+ .++..-|++++.|-
T Consensus 164 ~l~l~---~ev~~~L~~~~~~d 182 (214)
T PRK06620 164 SVTIS---RQIIDFLLVNLPRE 182 (214)
T ss_pred CCCCC---HHHHHHHHHHccCC
Confidence 1 111 35566666666553
No 104
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.81 E-value=0.41 Score=47.35 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=20.2
Q ss_pred cccCCCCeeecCccccccccccccCccCC-CCCCCEEecCCC
Q 039311 552 ACLKNLGRLSFESFMCHEQMGLLLPISFG-LTSLTYLRLTDC 592 (909)
Q Consensus 552 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-l~~L~~L~Ls~~ 592 (909)
..++.++.|.+.+ |....++-+..+.+ .++|+.|+|++|
T Consensus 122 ~~l~~i~~l~l~~--ck~~dD~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 122 RDLRSIKSLSLAN--CKYFDDWCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred hccchhhhheecc--ccchhhHHHHHhcccccchheeeccCC
Confidence 3444455555555 55555554444333 455666666655
No 105
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.94 E-value=19 Score=40.27 Aligned_cols=97 Identities=11% Similarity=0.050 Sum_probs=64.5
Q ss_pred CCeEEEEEeCCCCHH--HHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTSE--QMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~~--~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+++... .++.+...+.......++|++|.+. .+.... +.-..+++++++.++..+.....+-.....
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 355689999998654 4777777666555677778777553 343332 223589999999999988877655432211
Q ss_pred CchhHHHHHHHHHHhCCCchHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~ 147 (909)
-+ .+....|++.++|.|-.+.
T Consensus 198 i~--~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 198 TD--EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred CC--HHHHHHHHHHcCCCHHHHH
Confidence 11 2456778889999885443
No 106
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=75.56 E-value=0.084 Score=52.90 Aligned_cols=21 Identities=10% Similarity=-0.170 Sum_probs=10.5
Q ss_pred ceecccccCCCcccEeccccc
Q 039311 422 LETHSSIQYLNKLVVLNLKHC 442 (909)
Q Consensus 422 ~~~p~~i~~L~~L~~L~L~~c 442 (909)
...|.+.+.+++++++++.++
T Consensus 101 ~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 101 SQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred hhCCccccccCCcchhhhccC
Confidence 344555555555555555443
No 107
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=75.44 E-value=8.6 Score=46.18 Aligned_cols=112 Identities=15% Similarity=0.042 Sum_probs=72.0
Q ss_pred chHHHHHhhCCCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEE--EeCCchhhh-hc-CCCcEEECCCCCHHHHHH
Q 039311 39 GLNFRSKRLSRKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLII--TARDKQVLK-NC-GVDTIYEVKELFDDDARM 112 (909)
Q Consensus 39 ~~~~i~~~L~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIiv--TTR~~~v~~-~~-~~~~~y~l~~L~~~es~~ 112 (909)
.+..+.+.+++++++++-|+.|.. ..|+.+...+....+...|+| ||++..... .. ..-..+.+.+++.+|.++
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHH
Confidence 467888889999999998877754 348888877765556665666 677554222 11 112367889999999999
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHh
Q 039311 113 LFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRF 152 (909)
Q Consensus 113 LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~ 152 (909)
++.+.+-.....-+ .++.+.|.+++..-+-|+..++..
T Consensus 361 Il~~~a~~~~v~ls--~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINVHLA--AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCCCCC--HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 99887643221111 345556666665445666655544
No 108
>COG3899 Predicted ATPase [General function prediction only]
Probab=74.78 E-value=13 Score=46.49 Aligned_cols=172 Identities=13% Similarity=0.176 Sum_probs=108.7
Q ss_pred HHHHhhC-CCeEEEEEeCCCCHHH-----HHHHhhccCC-CCCCCEEEEEeCCchh---hhh-cCCCcEEECCCCCHHHH
Q 039311 42 FRSKRLS-RKKVLIVFDDVSTSEQ-----MEFLIGNQGW-LMQGSRLIITARDKQV---LKN-CGVDTIYEVKELFDDDA 110 (909)
Q Consensus 42 ~i~~~L~-~kr~LlVLDDv~~~~~-----~~~l~~~~~~-~~~gSrIivTTR~~~v---~~~-~~~~~~y~l~~L~~~es 110 (909)
.|..... .|+..+|+||+...+. ++.++....- .-.-..|..++..... ... -..-..+.+.+|+..+.
T Consensus 145 ~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~ 224 (849)
T COG3899 145 FIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADT 224 (849)
T ss_pred HHHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhH
Confidence 3334443 4699999999954332 3333333320 0011233333222222 222 22346899999999999
Q ss_pred HHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCC-------CHHHHHHHHHHHhcCCC-cchhhhhhh
Q 039311 111 RMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGR-------RIKDWESTIKKIKRIPH-VDIQKVLKV 182 (909)
Q Consensus 111 ~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~-------~~~~W~~~l~~L~~~~~-~~i~~~L~~ 182 (909)
-.|-...-.... ....+....|+++.+|.|+-+.-+=..|... +...|..-..++..... +++.+.+..
T Consensus 225 ~~lV~~~l~~~~---~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~ 301 (849)
T COG3899 225 NQLVAATLGCTK---LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAA 301 (849)
T ss_pred HHHHHHHhCCcc---cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHH
Confidence 999866553322 2235678999999999999998887777642 34456554444443332 224556788
Q ss_pred cccCCChhhhhhheeeeeccCCCCHHHHHHHHHh
Q 039311 183 SFDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDG 216 (909)
Q Consensus 183 sy~~L~~~~k~cfl~~a~f~~~~~~~~li~~w~~ 216 (909)
-.+.||...|+..-.-||+-+.++.+.|..++..
T Consensus 302 rl~kL~~~t~~Vl~~AA~iG~~F~l~~La~l~~~ 335 (849)
T COG3899 302 RLQKLPGTTREVLKAAACIGNRFDLDTLAALAED 335 (849)
T ss_pred HHhcCCHHHHHHHHHHHHhCccCCHHHHHHHHhh
Confidence 8899999999999999999888887777766654
No 109
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=73.37 E-value=41 Score=40.87 Aligned_cols=97 Identities=10% Similarity=0.065 Sum_probs=64.9
Q ss_pred CeEEEEEeCCCCHH--HHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDVSTSE--QMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv~~~~--~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
+.-++|||+|+... .++.|...+.......++|+||++.+ |.... ..-..|+++.++.++..+.+.+.+-......
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i 198 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAF 198 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCC
Confidence 45578899998654 48888777665556788888887754 32222 1125899999999999998877653322111
Q ss_pred chhHHHHHHHHHHhCCCc-hHHHH
Q 039311 126 VGYMELSNKIIKYAKGVP-LAIKV 148 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlP-Lal~~ 148 (909)
-.+..+.|++.++|.. -|+..
T Consensus 199 --d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 199 --EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred --CHHHHHHHHHHcCCCHHHHHHH
Confidence 1355678888998865 34433
No 110
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=72.86 E-value=19 Score=39.93 Aligned_cols=100 Identities=12% Similarity=0.031 Sum_probs=65.2
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-+||+|+++.. ...+.+...+........+|++|.+.+ +.... .....++.++++.++..+.....+-.....
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 35558899998754 456777666655556777777775543 33222 122578999999999888887766433322
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
-+ .+....+++.++|.|-.+...-
T Consensus 196 i~--~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 196 IE--DEALELIARAADGSLRDALSLL 219 (355)
T ss_pred CC--HHHHHHHHHHcCCChHHHHHHH
Confidence 11 3567788899999886655443
No 111
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=72.24 E-value=12 Score=42.25 Aligned_cols=63 Identities=17% Similarity=0.082 Sum_probs=51.7
Q ss_pred CeEEEEEeCCCCHHHHHHHhhccCCCCCCCEEEEEeCCchhhhhc------CCCcEEECCCCCHHHHHHH
Q 039311 50 KKVLIVFDDVSTSEQMEFLIGNQGWLMQGSRLIITARDKQVLKNC------GVDTIYEVKELFDDDARML 113 (909)
Q Consensus 50 kr~LlVLDDv~~~~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~------~~~~~y~l~~L~~~es~~L 113 (909)
++.+|+||.|.....|+.....+-+.++. +|++|+-+..+...- |....+++-||+..|...+
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 77899999999999999888877666666 999998887655433 4567899999999999875
No 112
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=72.02 E-value=21 Score=43.77 Aligned_cols=173 Identities=9% Similarity=0.073 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHhcCCCCcccCCccchHHHHHhhC---CCeEEEEEeCCCCHH--HHHHHhhccCCC-CCCCEEEE--Ee
Q 039311 14 LAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLS---RKKVLIVFDDVSTSE--QMEFLIGNQGWL-MQGSRLII--TA 85 (909)
Q Consensus 14 ~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L~---~kr~LlVLDDv~~~~--~~~~l~~~~~~~-~~gSrIiv--TT 85 (909)
...+.+.|..++.+..........+....+.+.+. +...+||||+|+... +=+.|...+.|. ..+++|+| +|
T Consensus 830 p~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEec
Confidence 44556666667753332222223334445555542 234589999998543 212233222232 25677666 34
Q ss_pred CCc--------hhhhhcCCCcEEECCCCCHHHHHHHHHHhhcCCC--CCCchhHHHHHHHHHHhCCCchHHHHHhHhhcC
Q 039311 86 RDK--------QVLKNCGVDTIYEVKELFDDDARMLFSRYAFGKN--YPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCG 155 (909)
Q Consensus 86 R~~--------~v~~~~~~~~~y~l~~L~~~es~~LF~~~af~~~--~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~ 155 (909)
.+- .|...++. ..+..++.+.++-.+++...|-... ..++-..-+|+.++..-|..-.||.++-.+...
T Consensus 910 NdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEi 988 (1164)
T PTZ00112 910 NTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFEN 988 (1164)
T ss_pred Cchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhh
Confidence 332 22233332 2456699999999999988875321 222334445555555555566777766655532
Q ss_pred C-----CHHHHHHHHHHHhcCCCcchhhhhhhcccCCChhhhhh
Q 039311 156 R-----RIKDWESTIKKIKRIPHVDIQKVLKVSFDGLDDEEQNL 194 (909)
Q Consensus 156 ~-----~~~~W~~~l~~L~~~~~~~i~~~L~~sy~~L~~~~k~c 194 (909)
+ +.+.-+.|.+++...+ +.++ -.+||.+.|-.
T Consensus 989 kegskVT~eHVrkAleeiE~sr---I~e~----IktLPlHqKLV 1025 (1164)
T PTZ00112 989 KRGQKIVPRDITEATNQLFDSP---LTNA----INYLPWPFKMF 1025 (1164)
T ss_pred cCCCccCHHHHHHHHHHHHhhh---HHHH----HHcCCHHHHHH
Confidence 1 3444445554443322 2222 25677776643
No 113
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=71.21 E-value=23 Score=38.90 Aligned_cols=93 Identities=11% Similarity=0.107 Sum_probs=61.5
Q ss_pred CeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
.|+. |+|+++. .+..+.+...+..-..++.+|+||.+. .++... ..-..+.+.+++.+++.+.+.... +. ..
T Consensus 107 ~kv~-iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~-~~- 182 (328)
T PRK05707 107 RKVV-LIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE-SD- 182 (328)
T ss_pred CeEE-EECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc-CC-
Confidence 4444 6799985 445666666665444677777777765 444333 223579999999999998887653 11 11
Q ss_pred chhHHHHHHHHHHhCCCchHHHHH
Q 039311 126 VGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
.+-+..++..++|-|+.+..+
T Consensus 183 ---~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 183 ---ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ---hHHHHHHHHHcCCCHHHHHHH
Confidence 233567789999999866655
No 114
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=70.43 E-value=42 Score=36.66 Aligned_cols=107 Identities=9% Similarity=0.098 Sum_probs=69.7
Q ss_pred CeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
++=.+|+|+++.. ...+.+...+..-.+++.+|.+|.+. .++... ..-..+.+.+++++++.+.+.... . +
T Consensus 108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~----~-~ 182 (319)
T PRK06090 108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG----I-T 182 (319)
T ss_pred CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC----C-c
Confidence 3447788999754 45777777766556777777776654 555544 223589999999999999886531 1 1
Q ss_pred chhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHHHHHHh
Q 039311 126 VGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIKKIK 169 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~l~~L~ 169 (909)
.+..++..++|-|+.+..+. ......+++.+++.+.
T Consensus 183 -----~~~~~l~l~~G~p~~A~~~~---~~~~~~~~~~~~~~l~ 218 (319)
T PRK06090 183 -----VPAYALKLNMGSPLKTLAMM---KEGGLEKYHKLERQLV 218 (319)
T ss_pred -----hHHHHHHHcCCCHHHHHHHh---CCCcHHHHHHHHHHHH
Confidence 13577899999999776553 3333444444444443
No 115
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=69.23 E-value=4 Score=25.88 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.3
Q ss_pred CCCCCEEecCCCCCCCccccc
Q 039311 581 LTSLTYLRLTDCGIIELPECL 601 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~lp~~l 601 (909)
+++|+.|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468899999999999888654
No 116
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=69.23 E-value=4 Score=25.88 Aligned_cols=21 Identities=29% Similarity=0.379 Sum_probs=17.3
Q ss_pred CCCCCEEecCCCCCCCccccc
Q 039311 581 LTSLTYLRLTDCGIIELPECL 601 (909)
Q Consensus 581 l~~L~~L~Ls~~~l~~lp~~l 601 (909)
+++|+.|+|++|.+..+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 468899999999999888654
No 117
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.80 E-value=3.2 Score=41.30 Aligned_cols=60 Identities=17% Similarity=0.243 Sum_probs=36.1
Q ss_pred CcEEECCCCCCee-cchhhccCCCCCEEeecCCCCCc-----ccCCCCCCcCceecccCccccccc
Q 039311 607 RSILLLEKNNFER-IPESIIQLSHLFSLGISHCERLH-----SLPELPCDLSDIEAHCCSSLEALS 666 (909)
Q Consensus 607 L~~L~L~~n~l~~-lp~~i~~l~~L~~L~L~~c~~L~-----~lp~l~~sL~~L~i~~C~~L~~l~ 666 (909)
++.++-+++.+.. --+.+..+++++.|.+.+|..+. .+-.+.++|+.|++++|+.+++-.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G 168 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG 168 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence 3444444444431 11245566777777777776654 344567788888888888776543
No 118
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=67.02 E-value=0.4 Score=48.24 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=46.3
Q ss_pred CCccEEEeeCCCCCccCCCC-CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCCCccccccccccccc
Q 039311 340 TELRYLQWHGCPLKSLSSKI-PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDLSLATNLESLNFQGC 418 (909)
Q Consensus 340 ~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l~~l~~L~~L~L~~c 418 (909)
...+.|+++.+.+..+...| -+..|+.|+++.+.+..+|+..+.+..++.+++..|.....+-+++..+.++++++.++
T Consensus 42 kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~ 121 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKT 121 (326)
T ss_pred ceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccC
Confidence 44556666666555555555 34556666666666666666666666666666655543333334666666666666655
Q ss_pred c
Q 039311 419 T 419 (909)
Q Consensus 419 ~ 419 (909)
.
T Consensus 122 ~ 122 (326)
T KOG0473|consen 122 E 122 (326)
T ss_pred c
Confidence 4
No 119
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=66.29 E-value=37 Score=37.27 Aligned_cols=96 Identities=15% Similarity=0.053 Sum_probs=59.0
Q ss_pred CeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
.+-+|||||++.. +..+.+...+.......++|+||.. ..+.... +....+++.+++.++..+.+...+-.....-
T Consensus 125 ~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~ 204 (337)
T PRK12402 125 DYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDY 204 (337)
T ss_pred CCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 3458999999754 3344455444444456788888754 3332222 1235788999999999888877654332211
Q ss_pred chhHHHHHHHHHHhCCCchHHH
Q 039311 126 VGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlPLal~ 147 (909)
-.+....++++++|.+-.+.
T Consensus 205 --~~~al~~l~~~~~gdlr~l~ 224 (337)
T PRK12402 205 --DDDGLELIAYYAGGDLRKAI 224 (337)
T ss_pred --CHHHHHHHHHHcCCCHHHHH
Confidence 13567778888888764443
No 120
>COG3903 Predicted ATPase [General function prediction only]
Probab=66.23 E-value=3 Score=45.98 Aligned_cols=194 Identities=20% Similarity=0.205 Sum_probs=128.6
Q ss_pred chHHHHHhhCCCeEEEEEeCCCCHHH-HHHHhhccCCCCCCCEEEEEeCCchhhhhcCCCcEEECCCCCHH-HHHHHHHH
Q 039311 39 GLNFRSKRLSRKKVLIVFDDVSTSEQ-MEFLIGNQGWLMQGSRLIITARDKQVLKNCGVDTIYEVKELFDD-DARMLFSR 116 (909)
Q Consensus 39 ~~~~i~~~L~~kr~LlVLDDv~~~~~-~~~l~~~~~~~~~gSrIivTTR~~~v~~~~~~~~~y~l~~L~~~-es~~LF~~ 116 (909)
....+..+..++|.++|+||--+... -..+...+....+.=+|+.|+|+... ...+..+.+..|..- ++.++|..
T Consensus 77 ~~~~~~~~~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ 153 (414)
T COG3903 77 AVDTLVRRIGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVC 153 (414)
T ss_pred HHHHHHHHHhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHH
Confidence 34577888899999999999755432 33344444434455678888887533 234667888888875 79999987
Q ss_pred hhcCCC---CCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCCCHHHHHHHHH----HHhcC------CCcchhhhhhhc
Q 039311 117 YAFGKN---YPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGRRIKDWESTIK----KIKRI------PHVDIQKVLKVS 183 (909)
Q Consensus 117 ~af~~~---~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~~~~~W~~~l~----~L~~~------~~~~i~~~L~~s 183 (909)
.|-.-. -....-......|.+..+|.|++|...++..+.....+--+-++ .++.- ........+..|
T Consensus 154 ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws 233 (414)
T COG3903 154 RAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWS 233 (414)
T ss_pred HHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhh
Confidence 763211 11122245688999999999999999999988776555433332 22222 112356778889
Q ss_pred ccCCChhhhhhheeeeeccCCCCHHHHHHHHHhcCCCc--cc-----chhHhhhccccEEe
Q 039311 184 FDGLDDEEQNLFLDIASFFKGEDKDCVIKFLDGCGFSA--EI-----GISVLVDKCLMVIL 237 (909)
Q Consensus 184 y~~L~~~~k~cfl~~a~f~~~~~~~~li~~w~~~g~~~--~~-----~i~~L~~~~li~~~ 237 (909)
|.=|..-++.-|--.+.|..+++.+ ...|.+.|-.. .. -+..+++++++.-.
T Consensus 234 ~~lLtgwe~~~~~rLa~~~g~f~~~--l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~ 292 (414)
T COG3903 234 YALLTGWERALFGRLAVFVGGFDLG--LALAVAAGADVDVPRYLVLLALTLLVDKSLVVAL 292 (414)
T ss_pred hHhhhhHHHHHhcchhhhhhhhccc--HHHHHhcCCccccchHHHHHHHHHHhhccchhhh
Confidence 9999988888888888887777655 23344444321 22 25667888887654
No 121
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=66.14 E-value=11 Score=34.71 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=48.3
Q ss_pred CChHHHHHHHHHHHhcCCCCcccCCccchHHHHHhhCCCe-EEEEEeCCCCH---HHHHHHhhccCCCCCCCEEEEEeCC
Q 039311 12 GGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKK-VLIVFDDVSTS---EQMEFLIGNQGWLMQGSRLIITARD 87 (909)
Q Consensus 12 ~~~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L~~kr-~LlVLDDv~~~---~~~~~l~~~~~~~~~gSrIivTTR~ 87 (909)
.+...+.++++.++.. ......+..+..+.+.+.+...+ .+|||||++.. +.++.+..... ..+-+||++.+.
T Consensus 49 ~~~~~~~~~i~~~l~~-~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 49 RTPRDFAQEILEALGL-PLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp SSHHHHHHHHHHHHT--SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred CCHHHHHHHHHHHhCc-cccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 3567888888888863 22222344566677888886554 59999999875 33666655444 667788888766
No 122
>PF14516 AAA_35: AAA-like domain
Probab=65.22 E-value=95 Score=34.16 Aligned_cols=55 Identities=15% Similarity=0.355 Sum_probs=43.0
Q ss_pred CCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhhcCC
Q 039311 96 VDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFLCGR 156 (909)
Q Consensus 96 ~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~~~ 156 (909)
+...+++++.+.+|..+|...+-.. .. ....++|....+|.|--+..++..+...
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~--~~----~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLE--FS----QEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhcc--CC----HHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4468999999999999999887422 11 1228899999999999998888888653
No 123
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.91 E-value=36 Score=40.67 Aligned_cols=100 Identities=8% Similarity=0.043 Sum_probs=64.7
Q ss_pred CCCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhcC-CCcEEECCCCCHHHHHHHHHHhhcCCCC
Q 039311 48 SRKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNCG-VDTIYEVKELFDDDARMLFSRYAFGKNY 123 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~~-~~~~y~l~~L~~~es~~LF~~~af~~~~ 123 (909)
.+++-++|||+|+.. ..++.|...+..-..+.++|++|.+ ..+....- .-..|.++.++.++..+.+.+.+-....
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 345668999999854 4578888777655556665555544 44443321 1257999999999999888766532221
Q ss_pred CCchhHHHHHHHHHHhCCCchHHHHH
Q 039311 124 PNVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
.. -.+..+.|++.++|.|..+..+
T Consensus 202 ~~--d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 202 AH--EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 11 1244578899999998655444
No 124
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.87 E-value=4.3 Score=25.98 Aligned_cols=17 Identities=29% Similarity=0.421 Sum_probs=11.1
Q ss_pred CCcEEECCCCCCeecch
Q 039311 606 SRSILLLEKNNFERIPE 622 (909)
Q Consensus 606 ~L~~L~L~~n~l~~lp~ 622 (909)
+|+.|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 56666666776666664
No 125
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=62.69 E-value=22 Score=36.58 Aligned_cols=100 Identities=19% Similarity=0.166 Sum_probs=54.9
Q ss_pred EEEEEeCCCCHH--HHHHHhhccCC-CCCCC-EEEEEeCCchhhh--------hcCCCcEEECCCCCHHHHHHHHHHhhc
Q 039311 52 VLIVFDDVSTSE--QMEFLIGNQGW-LMQGS-RLIITARDKQVLK--------NCGVDTIYEVKELFDDDARMLFSRYAF 119 (909)
Q Consensus 52 ~LlVLDDv~~~~--~~~~l~~~~~~-~~~gS-rIivTTR~~~v~~--------~~~~~~~y~l~~L~~~es~~LF~~~af 119 (909)
-+||+|||+... +-+.+...+.. ...|. .||+|++...... .+.....+++.+|++++-.++..+.+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 478899996432 22233332221 12444 3666665432111 222246899999999876666655432
Q ss_pred CCCCCCchhHHHHHHHHHHhCCCchHHHHHhHhh
Q 039311 120 GKNYPNVGYMELSNKIIKYAKGVPLAIKVLGRFL 153 (909)
Q Consensus 120 ~~~~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L 153 (909)
.....-+ .+....+++.+.|.+..++.+-..|
T Consensus 172 ~~~v~l~--~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 ERGLQLA--DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HcCCCCC--HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2111111 3566777777888887776655443
No 126
>PLN03025 replication factor C subunit; Provisional
Probab=62.65 E-value=33 Score=37.51 Aligned_cols=93 Identities=14% Similarity=0.157 Sum_probs=58.9
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
++.-+++||+++.. ..-+.+..........+++|+||... .+.... ..-.+++++++++++..+.+...|-.....
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~ 177 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVP 177 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCC
Confidence 35668999999854 33455555455455678888877543 222211 112479999999999988887776433221
Q ss_pred CchhHHHHHHHHHHhCCCc
Q 039311 125 NVGYMELSNKIIKYAKGVP 143 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlP 143 (909)
-+ .+....+++.++|-.
T Consensus 178 i~--~~~l~~i~~~~~gDl 194 (319)
T PLN03025 178 YV--PEGLEAIIFTADGDM 194 (319)
T ss_pred CC--HHHHHHHHHHcCCCH
Confidence 11 345678888888865
No 127
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=62.21 E-value=23 Score=36.46 Aligned_cols=125 Identities=16% Similarity=0.185 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHHHhcC-CCCcc--cCCc------------cchHHHHHhhCCCeEEEEEeCCCCH---HHHHH-HhhccC
Q 039311 13 GLAHLRQILLSAILDD-GNVSI--GCPS------------IGLNFRSKRLSRKKVLIVFDDVSTS---EQMEF-LIGNQG 73 (909)
Q Consensus 13 ~~~~l~~~ll~~i~~~-~~~~~--~~~~------------~~~~~i~~~L~~kr~LlVLDDv~~~---~~~~~-l~~~~~ 73 (909)
|--+|.+.+...+.+. .+..+ .+.+ .....++++++.-. +|+||||+.. ..|+. +..-+.
T Consensus 46 GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n 124 (219)
T PF00308_consen 46 GKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSAD-LLIIDDIQFLAGKQRTQEELFHLFN 124 (219)
T ss_dssp SHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSS-EEEEETGGGGTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCC-EEEEecchhhcCchHHHHHHHHHHH
Confidence 4457778887776531 22221 1111 22345566666444 6689999753 22332 222221
Q ss_pred -CCCCCCEEEEEeCCc-h--------hhhhcCCCcEEECCCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHHhC
Q 039311 74 -WLMQGSRLIITARDK-Q--------VLKNCGVDTIYEVKELFDDDARMLFSRYAFGKNYPNVGYMELSNKIIKYAK 140 (909)
Q Consensus 74 -~~~~gSrIivTTR~~-~--------v~~~~~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~ 140 (909)
....|-+||+|++.. . +...+...-+++++++++++-.+++.+.|-...-.-+ .++++-+++.+.
T Consensus 125 ~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~--~~v~~~l~~~~~ 199 (219)
T PF00308_consen 125 RLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELP--EEVIEYLARRFR 199 (219)
T ss_dssp HHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S---HHHHHHHHHHTT
T ss_pred HHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHhhc
Confidence 123577999999543 2 2233345568999999999999999988854332211 344455555444
No 128
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=61.78 E-value=42 Score=39.92 Aligned_cols=87 Identities=9% Similarity=0.078 Sum_probs=51.5
Q ss_pred EEEEeCCCCH---HHHH-HHhhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCcEEECCCCCHHHHHHHHHHhh
Q 039311 53 LIVFDDVSTS---EQME-FLIGNQGW-LMQGSRLIITARDK---------QVLKNCGVDTIYEVKELFDDDARMLFSRYA 118 (909)
Q Consensus 53 LlVLDDv~~~---~~~~-~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~y~l~~L~~~es~~LF~~~a 118 (909)
+|||||+... +.|+ .+...+.. ...|..|||||+.. .+...+...-+++++..+.+.-.+++.++|
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7889999643 2232 22221111 13466788888752 334445566799999999999999998887
Q ss_pred cCCCCCCchhHHHHHHHHHHhCC
Q 039311 119 FGKNYPNVGYMELSNKIIKYAKG 141 (909)
Q Consensus 119 f~~~~~~~~~~~l~~~iv~~c~G 141 (909)
-...-.-+ .++..-|++.+.+
T Consensus 460 ~~r~l~l~--~eVi~yLa~r~~r 480 (617)
T PRK14086 460 VQEQLNAP--PEVLEFIASRISR 480 (617)
T ss_pred HhcCCCCC--HHHHHHHHHhccC
Confidence 54332111 3444555554443
No 129
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=60.57 E-value=29 Score=39.96 Aligned_cols=99 Identities=14% Similarity=0.134 Sum_probs=61.3
Q ss_pred eEEEEEeCCCCHH---H-HHHHhhccCC-CCCCCEEEEEeCC---------chhhhhcCCCcEEECCCCCHHHHHHHHHH
Q 039311 51 KVLIVFDDVSTSE---Q-MEFLIGNQGW-LMQGSRLIITARD---------KQVLKNCGVDTIYEVKELFDDDARMLFSR 116 (909)
Q Consensus 51 r~LlVLDDv~~~~---~-~~~l~~~~~~-~~~gSrIivTTR~---------~~v~~~~~~~~~y~l~~L~~~es~~LF~~ 116 (909)
--+|||||+.... . .+.+...+.. ...|..||+|+.. +.+...+...-++.+++++.++-.+++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 3478899996432 2 2333332221 2345578888643 23344445567899999999999999998
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhCCCchHHHHH
Q 039311 117 YAFGKNYPNVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 117 ~af~~~~~~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
++-.......=-.++..-|++.++|.|-.+..+
T Consensus 287 ~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~ga 319 (450)
T PRK14087 287 EIKNQNIKQEVTEEAINFISNYYSDDVRKIKGS 319 (450)
T ss_pred HHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHH
Confidence 874322100111567888999999988655433
No 130
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=60.51 E-value=52 Score=37.15 Aligned_cols=93 Identities=12% Similarity=0.078 Sum_probs=62.0
Q ss_pred CeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
++-++|+|+++.. ...+.|...+....++..+|++|.+. .+.... ..-..+.+..++.++..+.+.... + .+
T Consensus 117 ~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~--~~- 192 (394)
T PRK07940 117 RWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G--VD- 192 (394)
T ss_pred CcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C--CC-
Confidence 4457888999754 34566666555455677777776664 444332 223589999999999998886432 1 11
Q ss_pred chhHHHHHHHHHHhCCCchHHHHH
Q 039311 126 VGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
.+.++.++..++|-|..+..+
T Consensus 193 ---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 193 ---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred ---HHHHHHHHHHcCCCHHHHHHH
Confidence 345778899999999766544
No 131
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.47 E-value=45 Score=39.82 Aligned_cols=104 Identities=10% Similarity=0.092 Sum_probs=66.6
Q ss_pred CCCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCC
Q 039311 48 SRKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNY 123 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~ 123 (909)
.+++-+||||+++.. +..+.|...+..-.....+|++|.+ ..+.... ..-.+|+++.++.++..+.+...+.....
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 356678999999754 4567777666543345566666655 4444332 11247899999999999888876654332
Q ss_pred CCchhHHHHHHHHHHhCCCc-hHHHHHhHhh
Q 039311 124 PNVGYMELSNKIIKYAKGVP-LAIKVLGRFL 153 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlP-Lal~~lg~~L 153 (909)
.-+ .+....|++.++|-+ -|+..+...+
T Consensus 197 ~id--~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 197 DYD--PAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCC--HHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 111 356778888999854 6666665443
No 132
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=60.19 E-value=38 Score=40.85 Aligned_cols=97 Identities=8% Similarity=0.024 Sum_probs=60.4
Q ss_pred CCeEEEEEeCCCCHH--HHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTSE--QMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~~--~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|||+|+... ..+.|...+.......++|++|.+.+ +.... +.-..|+++.++.++..+.+.+.+-+.+..
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~ 197 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA 197 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 466789999998644 35555555544445667777776543 22221 112468888999999888887665332221
Q ss_pred CchhHHHHHHHHHHhCCCchHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~ 147 (909)
.+ .+..+.|++.++|.+--+.
T Consensus 198 id--~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 198 YE--PPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cC--HHHHHHHHHHhCCCHHHHH
Confidence 11 3456888899998874443
No 133
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=58.82 E-value=1.3e+02 Score=33.36 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=62.3
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++=.+|+|+++. .+..+.|...+..-.++..+|.+|.+ ..++... ..-..+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 3455778899975 45578888777766678877666665 4555443 223589999999999999887651 11
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
+ ...++..++|.|+.+..+.
T Consensus 207 --~----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 207 --D----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --h----HHHHHHHcCCCHHHHHHHH
Confidence 1 1235788999997665443
No 134
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=57.86 E-value=7.5 Score=24.71 Aligned_cols=15 Identities=27% Similarity=0.545 Sum_probs=7.6
Q ss_pred CCCCEEeecCCCCCc
Q 039311 628 SHLFSLGISHCERLH 642 (909)
Q Consensus 628 ~~L~~L~L~~c~~L~ 642 (909)
++|+.|+|++|+.++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 445555555555443
No 135
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=56.18 E-value=70 Score=34.71 Aligned_cols=94 Identities=11% Similarity=0.101 Sum_probs=59.4
Q ss_pred CeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
.+-+||+|+++.. +..+.+...+......+++|+||... .+.... ....++++++++.++........+-.....-
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4568999999754 34556665555555667888877432 222211 1224689999999999888887765433211
Q ss_pred chhHHHHHHHHHHhCCCchH
Q 039311 126 VGYMELSNKIIKYAKGVPLA 145 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlPLa 145 (909)
+ .+....+++.++|.+--
T Consensus 182 ~--~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 182 T--DDALEAIYYVSEGDMRK 199 (319)
T ss_pred C--HHHHHHHHHHcCCCHHH
Confidence 1 34567778888887644
No 136
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=54.84 E-value=15 Score=35.63 Aligned_cols=63 Identities=16% Similarity=0.336 Sum_probs=37.9
Q ss_pred hHHHHHhhCCCeE-EEEEeCCCCHH-----HHHHHhhccCCCCCCCEEEEEeCCch--hhhhcCCCcEEECCC
Q 039311 40 LNFRSKRLSRKKV-LIVFDDVSTSE-----QMEFLIGNQGWLMQGSRLIITARDKQ--VLKNCGVDTIYEVKE 104 (909)
Q Consensus 40 ~~~i~~~L~~kr~-LlVLDDv~~~~-----~~~~l~~~~~~~~~gSrIivTTR~~~--v~~~~~~~~~y~l~~ 104 (909)
.+..++.+...+| |||||++...- ..+.+...+.....+--||+|.|+.. +... +|.+-+|+.
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~--AD~VTEm~~ 154 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEA--ADLVTEMRE 154 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh--Cceeeecce
Confidence 3455566655444 99999996432 24444444444446789999999963 2222 355555554
No 137
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=54.45 E-value=52 Score=40.32 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=55.3
Q ss_pred CCeEEEEEeCCC--CHHHHHHHhhccCCCCCCCEEEEEe--CCc--hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcC-
Q 039311 49 RKKVLIVFDDVS--TSEQMEFLIGNQGWLMQGSRLIITA--RDK--QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFG- 120 (909)
Q Consensus 49 ~kr~LlVLDDv~--~~~~~~~l~~~~~~~~~gSrIivTT--R~~--~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~- 120 (909)
+++.+||||||+ +..+.+.|..... .|+.++|++ .+. .+.... ....++++++|+.++..+++.+.+-.
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~ 184 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDK 184 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHH
Confidence 467899999996 4566777765443 466666643 332 121111 12357999999999999998876531
Q ss_pred -----CCCCCchhHHHHHHHHHHhCCCc
Q 039311 121 -----KNYPNVGYMELSNKIIKYAKGVP 143 (909)
Q Consensus 121 -----~~~~~~~~~~l~~~iv~~c~GlP 143 (909)
.... .=-.+....+++++.|.-
T Consensus 185 ~~~~g~~~v-~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 185 ERGYGDRKV-DLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HhhcCCccc-CCCHHHHHHHHHhCCCCH
Confidence 1111 111345677778887753
No 138
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=53.97 E-value=55 Score=39.38 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=64.5
Q ss_pred CCCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCC
Q 039311 48 SRKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNY 123 (909)
Q Consensus 48 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~ 123 (909)
.+++-++|||+|+. ....+.|...+.......++|.+|.+. .+.... ..-..|+++.|+.++..+.+.+.+-....
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i 196 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQI 196 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCC
Confidence 35677899999975 445777777666555566666665554 444332 22368999999999999888765422221
Q ss_pred CCchhHHHHHHHHHHhCCCchHHHHH
Q 039311 124 PNVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
.. -.+..+.|++.++|.+-.+..+
T Consensus 197 ~~--e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 197 PF--EPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 11 1345578899999987544433
No 139
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=53.63 E-value=61 Score=36.61 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=51.7
Q ss_pred CCeEEEEEeCCCCH-------------HHHH---HHhhccCCC--CCCCEEEEEeCCchhhhhc-----CCCcEEECCCC
Q 039311 49 RKKVLIVFDDVSTS-------------EQME---FLIGNQGWL--MQGSRLIITARDKQVLKNC-----GVDTIYEVKEL 105 (909)
Q Consensus 49 ~kr~LlVLDDv~~~-------------~~~~---~l~~~~~~~--~~gSrIivTTR~~~v~~~~-----~~~~~y~l~~L 105 (909)
....+|+|||++.. +... .+......+ ..+-+||.||...+.+... ..+..++++..
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 35689999999753 1122 222222221 2356788888765433321 24678999999
Q ss_pred CHHHHHHHHHHhhcCCCCC-CchhHHHHH
Q 039311 106 FDDDARMLFSRYAFGKNYP-NVGYMELSN 133 (909)
Q Consensus 106 ~~~es~~LF~~~af~~~~~-~~~~~~l~~ 133 (909)
+.++-.++|..++.+.... +.++..+++
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~~~~~~la~ 331 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADDVDLEELAE 331 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCcCCHHHHHH
Confidence 9999999999887654422 344544443
No 140
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=53.52 E-value=94 Score=35.29 Aligned_cols=90 Identities=11% Similarity=0.086 Sum_probs=52.3
Q ss_pred EEEEeCCCCHH---HH-HHHhhccCC-CCCCCEEEEEeCC-ch--------hhhhcCCCcEEECCCCCHHHHHHHHHHhh
Q 039311 53 LIVFDDVSTSE---QM-EFLIGNQGW-LMQGSRLIITARD-KQ--------VLKNCGVDTIYEVKELFDDDARMLFSRYA 118 (909)
Q Consensus 53 LlVLDDv~~~~---~~-~~l~~~~~~-~~~gSrIivTTR~-~~--------v~~~~~~~~~y~l~~L~~~es~~LF~~~a 118 (909)
+||||||+... .+ +.+...+.. ...|..||+||.. .. +...++...++++++.+.++-.+++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 78899997421 11 222222211 1235567777753 22 23333344579999999999999998887
Q ss_pred cCCCCCCchhHHHHHHHHHHhCCCch
Q 039311 119 FGKNYPNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 119 f~~~~~~~~~~~l~~~iv~~c~GlPL 144 (909)
-.....-+ .++...|++.+.|..-
T Consensus 282 ~~~~~~l~--~e~l~~ia~~~~~~~r 305 (405)
T TIGR00362 282 EEEGLELP--DEVLEFIAKNIRSNVR 305 (405)
T ss_pred HHcCCCCC--HHHHHHHHHhcCCCHH
Confidence 54332111 4566677777776543
No 141
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.09 E-value=80 Score=37.94 Aligned_cols=97 Identities=10% Similarity=0.053 Sum_probs=63.7
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCch-hhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDKQ-VLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~-v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|||+|+.. ...+.|...+.....+.++|+||.+.. +.... ..-..+++++++.++..+...+.+-+....
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~ 196 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA 196 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC
Confidence 56668899999854 457777776665556778888887643 22111 223589999999999988887665433221
Q ss_pred CchhHHHHHHHHHHhCCCchHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~ 147 (909)
.+ .+....|++.++|-+-.+.
T Consensus 197 id--~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 197 AD--QDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CC--HHHHHHHHHHcCCCHHHHH
Confidence 11 3456778888998774443
No 142
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=52.87 E-value=0.26 Score=56.82 Aligned_cols=56 Identities=25% Similarity=0.371 Sum_probs=33.9
Q ss_pred CCEEecCCCCCCC-----cccccCCC-CCCcEEECCCCCCe-----ecchhhccCCCCCEEeecCCC
Q 039311 584 LTYLRLTDCGIIE-----LPECLGQL-SSRSILLLEKNNFE-----RIPESIIQLSHLFSLGISHCE 639 (909)
Q Consensus 584 L~~L~Ls~~~l~~-----lp~~l~~l-~~L~~L~L~~n~l~-----~lp~~i~~l~~L~~L~L~~c~ 639 (909)
+..|++.+|.+.+ +...+..+ ..++.++++.|+++ .+...+..++.++.|.++.++
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~ 301 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP 301 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence 5557777766663 23344444 56677777777665 344455566677777777654
No 143
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.82 E-value=64 Score=40.09 Aligned_cols=99 Identities=12% Similarity=0.105 Sum_probs=66.1
Q ss_pred CCCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCC
Q 039311 48 SRKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNY 123 (909)
Q Consensus 48 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~ 123 (909)
.+++-++|||++.. .+..+.|...+.......++|++|.+. .+.... ..-.+|++++|+.++..+.+.+.+-....
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI 196 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQL 196 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 35777999999975 456788777776555667777766554 444332 12268999999999999888765532211
Q ss_pred CCchhHHHHHHHHHHhCCCchHHHH
Q 039311 124 PNVGYMELSNKIIKYAKGVPLAIKV 148 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlPLal~~ 148 (909)
. --.+..+.|++.++|.|--+..
T Consensus 197 ~--~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 197 P--FEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHH
Confidence 1 1135678899999998854433
No 144
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=52.75 E-value=13 Score=38.16 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=28.9
Q ss_pred CeEEEEEeCCCCH---HHHHHHhhccCCCCCCCEEEEEeCCchhhhhc
Q 039311 50 KKVLIVFDDVSTS---EQMEFLIGNQGWLMQGSRLIITARDKQVLKNC 94 (909)
Q Consensus 50 kr~LlVLDDv~~~---~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~ 94 (909)
.-=++|||||+.. .....+...+....+++.+||||.++.++..+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 3447899999853 33555555444455678999999999988876
No 145
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=52.39 E-value=88 Score=36.94 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=59.2
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+++. ....+.|...+.......++|++|.+. .+.... ..-.++++++++.++..+...+.+-..+..
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~ 197 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENIN 197 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 4667999999974 445777877776555667666555443 344332 223689999999999877766543222211
Q ss_pred CchhHHHHHHHHHHhCCCc
Q 039311 125 NVGYMELSNKIIKYAKGVP 143 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlP 143 (909)
--.+....|++.++|-+
T Consensus 198 --~e~~Al~~Ia~~s~Gdl 214 (546)
T PRK14957 198 --SDEQSLEYIAYHAKGSL 214 (546)
T ss_pred --CCHHHHHHHHHHcCCCH
Confidence 11334567888888865
No 146
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=51.71 E-value=94 Score=34.05 Aligned_cols=93 Identities=8% Similarity=0.006 Sum_probs=62.7
Q ss_pred CCeEEEEEeCCCCHH--HHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTSE--QMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~~--~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++=.+|+|+++... ..+.|...+..-.++..+|+||.+. .++... ..-..+.+.+++++++.+.+...+. .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~~---~- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQSS---A- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHhc---c-
Confidence 455677899998643 4677777666555677777777664 555443 2235899999999999988876541 1
Q ss_pred CchhHHHHHHHHHHhCCCchHHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKV 148 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~ 148 (909)
+ ..-+...+..++|.|+.+..
T Consensus 182 -~--~~~~~~~~~l~~g~p~~A~~ 202 (325)
T PRK06871 182 -E--ISEILTALRINYGRPLLALT 202 (325)
T ss_pred -C--hHHHHHHHHHcCCCHHHHHH
Confidence 1 11256778899999964433
No 147
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=51.13 E-value=98 Score=34.58 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=58.4
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEe-CCchhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITA-RDKQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-+||+|+++.. ..++.+...+........+|++| +.+.+.... ....+++.++++.++..+.....|-..+..
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~ 186 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK 186 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC
Confidence 45557999999754 34666665554334455666555 333443322 223479999999999988888776543321
Q ss_pred CchhHHHHHHHHHHhCCCch
Q 039311 125 NVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPL 144 (909)
-+ .+....++++++|.+-
T Consensus 187 i~--~~al~~l~~~~~gdlr 204 (367)
T PRK14970 187 FE--DDALHIIAQKADGALR 204 (367)
T ss_pred CC--HHHHHHHHHhCCCCHH
Confidence 11 3567777888888654
No 148
>PRK04195 replication factor C large subunit; Provisional
Probab=50.99 E-value=1.1e+02 Score=35.67 Aligned_cols=95 Identities=16% Similarity=0.090 Sum_probs=59.2
Q ss_pred CeEEEEEeCCCCHH------HHHHHhhccCCCCCCCEEEEEeCCch-hhh-hc-CCCcEEECCCCCHHHHHHHHHHhhcC
Q 039311 50 KKVLIVFDDVSTSE------QMEFLIGNQGWLMQGSRLIITARDKQ-VLK-NC-GVDTIYEVKELFDDDARMLFSRYAFG 120 (909)
Q Consensus 50 kr~LlVLDDv~~~~------~~~~l~~~~~~~~~gSrIivTTR~~~-v~~-~~-~~~~~y~l~~L~~~es~~LF~~~af~ 120 (909)
++-+||||+++... .++.+...+. ..+..||+||.+.. +.. .. .....+++..++.++..+.....+..
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~ 175 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK 175 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHH
Confidence 67899999998642 2555554443 23445777765432 111 11 22357899999999988888776644
Q ss_pred CCCCCchhHHHHHHHHHHhCCCchHHHH
Q 039311 121 KNYPNVGYMELSNKIIKYAKGVPLAIKV 148 (909)
Q Consensus 121 ~~~~~~~~~~l~~~iv~~c~GlPLal~~ 148 (909)
....-+ .+....|++.++|-.-++..
T Consensus 176 egi~i~--~eaL~~Ia~~s~GDlR~ain 201 (482)
T PRK04195 176 EGIECD--DEALKEIAERSGGDLRSAIN 201 (482)
T ss_pred cCCCCC--HHHHHHHHHHcCCCHHHHHH
Confidence 332211 35678888999887655443
No 149
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=50.10 E-value=1.1e+02 Score=35.43 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=58.8
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
.++-+||+|+++.. +..+.|...+.....+..+|++|.. +.+.... ....+++++.+++++..+...+.+-+.+..
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~ 199 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIE 199 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 56678899999754 3456666655544456667766643 3343332 123579999999999888777655322211
Q ss_pred CchhHHHHHHHHHHhCCCch
Q 039311 125 NVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPL 144 (909)
- -.+.+..++++++|.+-
T Consensus 200 i--~~~al~~L~~~s~gdlr 217 (451)
T PRK06305 200 T--SREALLPIARAAQGSLR 217 (451)
T ss_pred C--CHHHHHHHHHHcCCCHH
Confidence 1 13467788889988653
No 150
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=48.59 E-value=1.2e+02 Score=35.74 Aligned_cols=98 Identities=9% Similarity=0.062 Sum_probs=63.6
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+++.. +..++|...+....+..++|++|.+. .+.... ..-..+++.+++.++..+...+.+-.....
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~ 195 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS 195 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 35668899999753 45677777666555678888777764 222211 123589999999999888876655332221
Q ss_pred CchhHHHHHHHHHHhCCCchHHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKV 148 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~ 148 (909)
.+ .+....|++.++|.+--+..
T Consensus 196 i~--~~Al~~Ia~~s~GdlR~aln 217 (535)
T PRK08451 196 YE--PEALEILARSGNGSLRDTLT 217 (535)
T ss_pred CC--HHHHHHHHHHcCCcHHHHHH
Confidence 11 35677888999998844433
No 151
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=48.45 E-value=77 Score=35.30 Aligned_cols=95 Identities=17% Similarity=0.322 Sum_probs=60.5
Q ss_pred hhCCCeEEEEEeCCC--CHHHHHHHhhccCCCCCCCEEEE--EeCCchhh---hhcCCCcEEECCCCCHHHHHHHHHHhh
Q 039311 46 RLSRKKVLIVFDDVS--TSEQMEFLIGNQGWLMQGSRLII--TARDKQVL---KNCGVDTIYEVKELFDDDARMLFSRYA 118 (909)
Q Consensus 46 ~L~~kr~LlVLDDv~--~~~~~~~l~~~~~~~~~gSrIiv--TTR~~~v~---~~~~~~~~y~l~~L~~~es~~LF~~~a 118 (909)
+..++|.+|.||.|. +..|-+.+..... .|.-|+| ||-+..-. .-.....+|++++|+.+|-.++..+-+
T Consensus 100 ~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 100 RLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred HhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 345789999999996 5667777766554 6777666 45554311 111234699999999999999998733
Q ss_pred cCCCCC----Cchh-HHHHHHHHHHhCCCc
Q 039311 119 FGKNYP----NVGY-MELSNKIIKYAKGVP 143 (909)
Q Consensus 119 f~~~~~----~~~~-~~l~~~iv~~c~GlP 143 (909)
-..... ...+ .+.-.-++..+.|--
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 211111 0111 345667778887764
No 152
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=47.84 E-value=75 Score=34.70 Aligned_cols=95 Identities=17% Similarity=0.136 Sum_probs=60.7
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEe-CCchhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITA-RDKQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++=++|+|+++.. ...+.|...+..-.+ ..+|++| +-..++... ..-.++.+.++++++..+.+....-.. ..
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~-~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-~~ 200 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPGN-GTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-IL 200 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCCC-CeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-cc
Confidence 46678899999754 446666665544343 3555555 444555543 223689999999999999998764211 11
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
......++..++|-|..+...
T Consensus 201 ----~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 201 ----NINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred ----hhHHHHHHHHcCCCHHHHHHH
Confidence 111357899999999766543
No 153
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.72 E-value=1.4e+02 Score=35.95 Aligned_cols=96 Identities=8% Similarity=0.108 Sum_probs=62.0
Q ss_pred CeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
+.-++|||+|+. ....+.+...+..-....++|++|.+ ..+.... ..-..|+++.++.++..+.+.+.+-......
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i 203 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA 203 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC
Confidence 455789999985 44577777766654456677766654 3443322 2236899999999998888877653332221
Q ss_pred chhHHHHHHHHHHhCCCchHHH
Q 039311 126 VGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlPLal~ 147 (909)
+ .+....|++.++|-+--+.
T Consensus 204 e--~~AL~~La~~s~GslR~al 223 (618)
T PRK14951 204 E--PQALRLLARAARGSMRDAL 223 (618)
T ss_pred C--HHHHHHHHHHcCCCHHHHH
Confidence 1 3456788888988774443
No 154
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=46.45 E-value=93 Score=37.29 Aligned_cols=98 Identities=10% Similarity=0.040 Sum_probs=63.5
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
.++-+||+|+++.. +..+.|...+........+|++|.+ ..+.... .....++++.++.++..+.+.+.+-.....
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~ 198 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN 198 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668999999744 5577776666554556777776644 3343322 122478899999999888887776443321
Q ss_pred CchhHHHHHHHHHHhCCCchHHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKV 148 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~ 148 (909)
.+ .+....+++.++|.+-.+..
T Consensus 199 i~--~eal~~La~~s~Gdlr~al~ 220 (585)
T PRK14950 199 LE--PGALEAIARAATGSMRDAEN 220 (585)
T ss_pred CC--HHHHHHHHHHcCCCHHHHHH
Confidence 11 35677888999998854443
No 155
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=45.65 E-value=1.1e+02 Score=34.74 Aligned_cols=117 Identities=16% Similarity=0.190 Sum_probs=66.1
Q ss_pred CCCeEEEEEeCCCCH------------HH----HHHHhhccCCC--CCCCEEEEEeCCchhhhh-----cCCCcEEECCC
Q 039311 48 SRKKVLIVFDDVSTS------------EQ----MEFLIGNQGWL--MQGSRLIITARDKQVLKN-----CGVDTIYEVKE 104 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~------------~~----~~~l~~~~~~~--~~gSrIivTTR~~~v~~~-----~~~~~~y~l~~ 104 (909)
.....+|+||+++.. .. +..+...+..+ ..+-+||+||...+.+.. ...+..+++..
T Consensus 236 ~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~ 315 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 315 (398)
T ss_pred hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCC
Confidence 456789999998642 01 22333333322 235678888886654432 13567899999
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCchhHHHHHHHHHHhCCCc----hHHHHHhHhh---cCC---CHHHHHHHHHHH
Q 039311 105 LFDDDARMLFSRYAFGKN-YPNVGYMELSNKIIKYAKGVP----LAIKVLGRFL---CGR---RIKDWESTIKKI 168 (909)
Q Consensus 105 L~~~es~~LF~~~af~~~-~~~~~~~~l~~~iv~~c~GlP----Lal~~lg~~L---~~~---~~~~W~~~l~~L 168 (909)
.+.++-.++|..+.-+.. .++.++.+++ +...|.- -++..-|++. +++ +.+.++.++.+.
T Consensus 316 P~~~~R~~Il~~~~~~~~l~~dvd~~~la----~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 316 PDRRQKRLIFQTITSKMNLSEEVDLEDFV----SRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred cCHHHHHHHHHHHHhcCCCCcccCHHHHH----HHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 999999999987654332 2334555544 3444432 2333333332 222 466666666654
No 156
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=45.19 E-value=1.1e+02 Score=35.42 Aligned_cols=123 Identities=11% Similarity=0.102 Sum_probs=68.5
Q ss_pred HHHhhCCCeEEEEEeCCCCH---HH-HHHHhhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCcEEECCCCCHH
Q 039311 43 RSKRLSRKKVLIVFDDVSTS---EQ-MEFLIGNQGW-LMQGSRLIITARDK---------QVLKNCGVDTIYEVKELFDD 108 (909)
Q Consensus 43 i~~~L~~kr~LlVLDDv~~~---~~-~~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~y~l~~L~~~ 108 (909)
+++.++. --+||||||+.. +. -+.+...+.. ...|..||+||... .+...+....++++++++.+
T Consensus 205 ~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 205 FKEKYRS-VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLE 283 (450)
T ss_pred HHHHHhc-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHH
Confidence 3334442 338899999642 11 1222222111 12355678877542 22334444568999999999
Q ss_pred HHHHHHHHhhcCCCCCCchhHHHHHHHHHHhCCCchH----HHHHhHh--hcCC--CHHHHHHHHHHH
Q 039311 109 DARMLFSRYAFGKNYPNVGYMELSNKIIKYAKGVPLA----IKVLGRF--LCGR--RIKDWESTIKKI 168 (909)
Q Consensus 109 es~~LF~~~af~~~~~~~~~~~l~~~iv~~c~GlPLa----l~~lg~~--L~~~--~~~~W~~~l~~L 168 (909)
+-.+++.+.+-.....-+ .++..-|++.+.|..-. +..+..+ +.++ +....+.++..+
T Consensus 284 ~r~~il~~~~~~~~~~l~--~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 284 TRIAILKKKAEEEGIDLP--DEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHHcCCCCC--HHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 999999988754221111 35677777777776532 2222221 1232 566777777655
No 157
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.08 E-value=1.1e+02 Score=35.31 Aligned_cols=95 Identities=12% Similarity=-0.045 Sum_probs=61.1
Q ss_pred CCCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEE-eCCchhhhhcC-CCcEEECCCCCHHHHHHHHHHhhcCCCC
Q 039311 48 SRKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIIT-ARDKQVLKNCG-VDTIYEVKELFDDDARMLFSRYAFGKNY 123 (909)
Q Consensus 48 ~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivT-TR~~~v~~~~~-~~~~y~l~~L~~~es~~LF~~~af~~~~ 123 (909)
.+++-++|+|+|+. .+.+++|...+.........|.+ |....+..... .-..|.+.+++.++..+.+.+.+-..+.
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi 198 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENV 198 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCC
Confidence 34666899999975 45588887766543345555544 44444443331 1247999999999888887766533221
Q ss_pred CCchhHHHHHHHHHHhCCCch
Q 039311 124 PNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlPL 144 (909)
.- -.+....|++.++|.+-
T Consensus 199 ~~--e~eAL~~Ia~~S~Gd~R 217 (484)
T PRK14956 199 QY--DQEGLFWIAKKGDGSVR 217 (484)
T ss_pred CC--CHHHHHHHHHHcCChHH
Confidence 11 13467889999999873
No 158
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=43.65 E-value=1.2e+02 Score=33.09 Aligned_cols=94 Identities=12% Similarity=0.041 Sum_probs=62.2
Q ss_pred CCeEEEEEeCCCCHH--HHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTSE--QMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~~--~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++=++|||+++... .-+.|...+..-..++.+|++|.. ..++... ..-..+.+..++.+++.+..... + ..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~--~--~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ--G--VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc--C--CC
Confidence 456688999998543 355555555544467777777765 4455443 22357899999999998888653 1 11
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHHh
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVLG 150 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~lg 150 (909)
..-+..++..++|-|+.+..+.
T Consensus 188 ----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1226678999999998776554
No 159
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.17 E-value=1.1e+02 Score=34.50 Aligned_cols=96 Identities=7% Similarity=0.014 Sum_probs=62.1
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEe-CCchhhhhcC-CCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITA-RDKQVLKNCG-VDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~-~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+++.. ++++.+...+....+.+.+|++| +-+.+..... ...++++++++.++..+.....+-.....
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~ 205 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGIS 205 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 45668899999754 46777777776555677776665 4344443321 12478999999999887776655222111
Q ss_pred CchhHHHHHHHHHHhCCCchHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAI 146 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal 146 (909)
- -.+.+..+++.++|.+--+
T Consensus 206 i--~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 206 V--DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred C--CHHHHHHHHHHcCCCHHHH
Confidence 1 1356788899999977433
No 160
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.86 E-value=2.3e+02 Score=34.19 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=62.5
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEe-CCchhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITA-RDKQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++=++|+|+++.. +.++.|...+..-..++.+|++| +.+.+.... ....++++++++.++..+.+.+.+-.....
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34557899999754 45777777666555667766655 445555443 223589999999999988887765433321
Q ss_pred CchhHHHHHHHHHHhCCCchHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAI 146 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal 146 (909)
.+ .+....|+..++|-.--+
T Consensus 200 i~--~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 200 AE--PEALNVIAQKADGGMRDA 219 (614)
T ss_pred CC--HHHHHHHHHHcCCCHHHH
Confidence 11 245678888888866433
No 161
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=41.28 E-value=24 Score=22.71 Aligned_cols=16 Identities=25% Similarity=0.353 Sum_probs=10.0
Q ss_pred CCCcEEECCCCCCeec
Q 039311 605 SSRSILLLEKNNFERI 620 (909)
Q Consensus 605 ~~L~~L~L~~n~l~~l 620 (909)
.+|+.|+|++|+++.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4566677777766543
No 162
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.61 E-value=1.1e+02 Score=35.44 Aligned_cols=101 Identities=16% Similarity=0.099 Sum_probs=61.7
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-+||+|+++.. ++.+.+...+........+|++|.+ ..+.... ..-.++++++++.++..+.+...+......
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~ 195 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE 195 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC
Confidence 46679999999754 4466666666544444555544443 3443332 123589999999999888887776433321
Q ss_pred CchhHHHHHHHHHHhCCC-chHHHHHhH
Q 039311 125 NVGYMELSNKIIKYAKGV-PLAIKVLGR 151 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~Gl-PLal~~lg~ 151 (909)
-+ .+....|+++++|- +.|+..+-.
T Consensus 196 i~--~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 196 ID--REALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred CC--HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 11 34566777777654 566665544
No 163
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=39.95 E-value=2.2e+02 Score=35.53 Aligned_cols=94 Identities=11% Similarity=0.117 Sum_probs=60.1
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|||+++.. ...+.|...+..-.....+|++|.+ ..|...+ ..-.+|++..++.++..+.+.+.+-.....
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~ 198 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP 198 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 45557889999754 4577777777665667777766644 3454433 223689999999998887776644222211
Q ss_pred CchhHHHHHHHHHHhCCCch
Q 039311 125 NVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPL 144 (909)
. -.+....|++.++|-+.
T Consensus 199 i--d~eal~lLa~~sgGdlR 216 (824)
T PRK07764 199 V--EPGVLPLVIRAGGGSVR 216 (824)
T ss_pred C--CHHHHHHHHHHcCCCHH
Confidence 1 12345678888888774
No 164
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=39.89 E-value=3e+02 Score=32.94 Aligned_cols=99 Identities=15% Similarity=0.153 Sum_probs=63.2
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEe-CCchhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITA-RDKQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
.++-++|+|+++. .+..+.|...+........+|++| ....+.... .....|+...++.++..+...+.+-.....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~ 196 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVV 196 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCC
Confidence 4556889999974 455777777776555666666555 444444432 223689999999999888777655433221
Q ss_pred CchhHHHHHHHHHHhCCCch-HHHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPL-AIKVL 149 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPL-al~~l 149 (909)
.+ .+....|++.++|-+- |+..+
T Consensus 197 i~--~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 197 VD--DAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred CC--HHHHHHHHHHcCCCHHHHHHHH
Confidence 11 2456778888888763 44443
No 165
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=39.60 E-value=1e+02 Score=33.07 Aligned_cols=69 Identities=9% Similarity=0.038 Sum_probs=44.0
Q ss_pred eEEEEEeCCCCH-----------HHHHHHhhccCCCCCCCEEEEEeCCchhhhhc--------CCCcEEECCCCCHHHHH
Q 039311 51 KVLIVFDDVSTS-----------EQMEFLIGNQGWLMQGSRLIITARDKQVLKNC--------GVDTIYEVKELFDDDAR 111 (909)
Q Consensus 51 r~LlVLDDv~~~-----------~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~--------~~~~~y~l~~L~~~es~ 111 (909)
.-+|+||++... +.++.|...+.....+-+||++|.....-... .....+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 358899999632 23555665555444555777776543221111 12467999999999999
Q ss_pred HHHHHhhc
Q 039311 112 MLFSRYAF 119 (909)
Q Consensus 112 ~LF~~~af 119 (909)
++|.+.+-
T Consensus 202 ~I~~~~l~ 209 (284)
T TIGR02880 202 VIAGLMLK 209 (284)
T ss_pred HHHHHHHH
Confidence 99987763
No 166
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=39.13 E-value=0.35 Score=55.73 Aligned_cols=41 Identities=29% Similarity=0.235 Sum_probs=33.5
Q ss_pred cCCC-CCCCEEecCCCCCCC-----cccccCCCCCCcEEECCCCCCe
Q 039311 578 SFGL-TSLTYLRLTDCGIIE-----LPECLGQLSSRSILLLEKNNFE 618 (909)
Q Consensus 578 ~~~l-~~L~~L~Ls~~~l~~-----lp~~l~~l~~L~~L~L~~n~l~ 618 (909)
+..+ +.++.++++.|.+.+ +...+..++.++.|.+.+|.+.
T Consensus 257 l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 257 LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 4445 688999999999884 5677778889999999999876
No 167
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=38.41 E-value=1.4e+02 Score=35.91 Aligned_cols=97 Identities=13% Similarity=0.042 Sum_probs=62.4
Q ss_pred CeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEe-CCchhhhhcC-CCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITA-RDKQVLKNCG-VDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~~-~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
++-++|+|+++.. ...+.|...+..-..+.++|++| ....+..... .-..+++..++.++..+.+.+.+-......
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i 211 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEV 211 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 4557899999754 34667776665555677776655 4444443331 225799999999999888877664332211
Q ss_pred chhHHHHHHHHHHhCCCchHHHH
Q 039311 126 VGYMELSNKIIKYAKGVPLAIKV 148 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlPLal~~ 148 (909)
+ .+....|++.++|-+.-+..
T Consensus 212 ~--~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 212 E--DEALALIARAAEGSVRDGLS 232 (598)
T ss_pred C--HHHHHHHHHHcCCCHHHHHH
Confidence 1 25677888899988754443
No 168
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=37.03 E-value=5.3 Score=24.78 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=2.7
Q ss_pred ccccccccc
Q 039311 410 LESLNFQGC 418 (909)
Q Consensus 410 L~~L~L~~c 418 (909)
|++|+|++|
T Consensus 4 L~~L~l~~n 12 (24)
T PF13516_consen 4 LETLDLSNN 12 (24)
T ss_dssp -SEEE-TSS
T ss_pred CCEEEccCC
Confidence 333333333
No 169
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=36.96 E-value=2e+02 Score=33.18 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=42.3
Q ss_pred eEEEEEeCCCCHHH----HHHHhhccCC-CCCCCEEEEEeCCc---------hhhhhcCCCcEEECCCCCHHHHHHHHHH
Q 039311 51 KVLIVFDDVSTSEQ----MEFLIGNQGW-LMQGSRLIITARDK---------QVLKNCGVDTIYEVKELFDDDARMLFSR 116 (909)
Q Consensus 51 r~LlVLDDv~~~~~----~~~l~~~~~~-~~~gSrIivTTR~~---------~v~~~~~~~~~y~l~~L~~~es~~LF~~ 116 (909)
.-+|++||+..... -+.+...+.. ...|-.||+||... .+...+...-++++++++.++-.+++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 34788899965321 1122221110 12456788887542 2333444457899999999999999988
Q ss_pred hhcC
Q 039311 117 YAFG 120 (909)
Q Consensus 117 ~af~ 120 (909)
++-.
T Consensus 283 k~~~ 286 (445)
T PRK12422 283 KAEA 286 (445)
T ss_pred HHHH
Confidence 7743
No 170
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=36.90 E-value=59 Score=37.23 Aligned_cols=121 Identities=14% Similarity=0.137 Sum_probs=66.5
Q ss_pred CCCeEEEEEeCCCCHH----------------HHHHHhhccCCC--CCCCEEEEEeCCchhhhhc-----CCCcEEECCC
Q 039311 48 SRKKVLIVFDDVSTSE----------------QMEFLIGNQGWL--MQGSRLIITARDKQVLKNC-----GVDTIYEVKE 104 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~~----------------~~~~l~~~~~~~--~~gSrIivTTR~~~v~~~~-----~~~~~y~l~~ 104 (909)
.....+|+||+++... .+..+...+..+ ..+-+||+||...+.+... ..+..+++..
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~ 353 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPN 353 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCC
Confidence 3567899999985321 012222222222 2356888888866554432 3467899999
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCchhHHHHHHHHHHhCCCchHHHHHhHhhc---CC---CHHHHHHHHHHH
Q 039311 105 LFDDDARMLFSRYAFGKN-YPNVGYMELSNKIIKYAKGVPLAIKVLGRFLC---GR---RIKDWESTIKKI 168 (909)
Q Consensus 105 L~~~es~~LF~~~af~~~-~~~~~~~~l~~~iv~~c~GlPLal~~lg~~L~---~~---~~~~W~~~l~~L 168 (909)
.+.++..++|..++-+.. ..+.++.+++.....+.+.---++..-|+.+. ++ +.+.++.++++.
T Consensus 354 Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 354 PDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKV 424 (438)
T ss_pred CCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHH
Confidence 999999999998875443 22334444443322222221223333333331 22 566666666653
No 171
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=36.28 E-value=2.3e+02 Score=33.74 Aligned_cols=99 Identities=9% Similarity=0.017 Sum_probs=63.1
Q ss_pred CCCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCC
Q 039311 48 SRKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNY 123 (909)
Q Consensus 48 ~~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~ 123 (909)
.+++-++|+|++... ..++.|...+..-.....+|.+|.+ +.+.... ..-..++.++++.++..+.....+.....
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 346668899999754 4577777777654556666666544 3443332 12246899999999988888776644332
Q ss_pred CCchhHHHHHHHHHHhCCCchHHHH
Q 039311 124 PNVGYMELSNKIIKYAKGVPLAIKV 148 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlPLal~~ 148 (909)
..+ .+....|++.++|.+-.+..
T Consensus 197 ~id--~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 197 KYE--DEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred CCC--HHHHHHHHHHcCCCHHHHHH
Confidence 211 35566788888887754433
No 172
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.24 E-value=2.7e+02 Score=32.71 Aligned_cols=97 Identities=9% Similarity=0.026 Sum_probs=58.7
Q ss_pred CCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
++.-++|+|+|+. ....+.+...+....+..++|++|.+. .+.... ..-..++++.++.++..+...+.+-..+..
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~ 197 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVE 197 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4556788999985 445777777666555677777766553 333222 112468899999888766554443222211
Q ss_pred CchhHHHHHHHHHHhCCCchHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIK 147 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~ 147 (909)
.+ .+....|++.++|-+--+.
T Consensus 198 ~~--~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 198 FE--NAALDLLARAANGSVRDAL 218 (509)
T ss_pred CC--HHHHHHHHHHcCCcHHHHH
Confidence 11 2345678888888774443
No 173
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=36.06 E-value=1.8e+02 Score=33.89 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=62.8
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+|+.. +..+.|...+..-.+..++|++|.. +.+.... ..-..++++.++.++..+.+.+.+-..+..
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~ 194 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE 194 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC
Confidence 45668999999754 4477777766655667777766643 4444432 123579999999999988888776543322
Q ss_pred CchhHHHHHHHHHHhCCCchH
Q 039311 125 NVGYMELSNKIIKYAKGVPLA 145 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLa 145 (909)
-+ .+....|++.++|-+-.
T Consensus 195 i~--~eAL~lIa~~s~GslR~ 213 (491)
T PRK14964 195 HD--EESLKLIAENSSGSMRN 213 (491)
T ss_pred CC--HHHHHHHHHHcCCCHHH
Confidence 11 34466788888887643
No 174
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=35.89 E-value=64 Score=29.64 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=27.2
Q ss_pred hCCCeEEEEEeCCCCH--H---HHHHHhhccCCC---CCCCEEEEEeCCch
Q 039311 47 LSRKKVLIVFDDVSTS--E---QMEFLIGNQGWL---MQGSRLIITARDKQ 89 (909)
Q Consensus 47 L~~kr~LlVLDDv~~~--~---~~~~l~~~~~~~---~~gSrIivTTR~~~ 89 (909)
...+..+||+||++.. + .+..+....... ..+.+||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3457889999999863 2 233333333222 46788999988754
No 175
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.26 E-value=1.5e+02 Score=35.06 Aligned_cols=95 Identities=9% Similarity=0.053 Sum_probs=59.8
Q ss_pred CCeEEEEEeCCCCHH--HHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTSE--QMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~~--~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+++... ..+.+...+........+|++|.+. .+.... ..-..++++.++.++..+...+.+-.....
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~ 197 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP 197 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC
Confidence 456689999998543 4677777666555667777766554 333221 112578999999999887776654322211
Q ss_pred CchhHHHHHHHHHHhCCCchH
Q 039311 125 NVGYMELSNKIIKYAKGVPLA 145 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLa 145 (909)
. -.+....|++.++|.+--
T Consensus 198 ~--~~~al~~la~~s~Gslr~ 216 (527)
T PRK14969 198 F--DATALQLLARAAAGSMRD 216 (527)
T ss_pred C--CHHHHHHHHHHcCCCHHH
Confidence 1 134457788888987743
No 176
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=35.05 E-value=2.8e+02 Score=33.92 Aligned_cols=96 Identities=10% Similarity=0.053 Sum_probs=60.6
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEe-CCchhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITA-RDKQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+++.. ..+++|...+........+|++| +...+.... ..-..+++.+++.++..+.+...+-.....
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 45668899999743 45777777666544555655444 444554332 222589999999999888877654322211
Q ss_pred CchhHHHHHHHHHHhCCCchHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAI 146 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal 146 (909)
.+ .+.+..+++.++|-+--+
T Consensus 197 id--~eAl~~LA~lS~GslR~A 216 (725)
T PRK07133 197 YE--KNALKLIAKLSSGSLRDA 216 (725)
T ss_pred CC--HHHHHHHHHHcCCCHHHH
Confidence 11 245678889998876433
No 177
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=34.66 E-value=91 Score=33.46 Aligned_cols=96 Identities=17% Similarity=0.127 Sum_probs=64.3
Q ss_pred EEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCchhhh-hc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCCch
Q 039311 52 VLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDKQVLK-NC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPNVG 127 (909)
Q Consensus 52 ~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~~v~~-~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~~ 127 (909)
=.+|||+.+.. +.|.++......+...+|-|..|-.-+... -. ..-.-|.-+.|.+++..+-+...|-..+..-+
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d- 209 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDID- 209 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCC-
Confidence 36788999865 459999998887778887666655433221 11 11135888999999999888888855443222
Q ss_pred hHHHHHHHHHHhCCCc-hHHHHH
Q 039311 128 YMELSNKIIKYAKGVP-LAIKVL 149 (909)
Q Consensus 128 ~~~l~~~iv~~c~GlP-Lal~~l 149 (909)
.+..+.|+++++|-- -|+.++
T Consensus 210 -~~al~~I~~~S~GdLR~Ait~L 231 (346)
T KOG0989|consen 210 -DDALKLIAKISDGDLRRAITTL 231 (346)
T ss_pred -HHHHHHHHHHcCCcHHHHHHHH
Confidence 356788999999853 344444
No 178
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=34.38 E-value=1.7e+02 Score=33.63 Aligned_cols=96 Identities=10% Similarity=0.103 Sum_probs=54.0
Q ss_pred HhhCCCeEEEEEeCCCCH---HHH-HHHhhccCC-CCCCCEEEEEeC-Cch--------hhhhcCCCcEEECCCCCHHHH
Q 039311 45 KRLSRKKVLIVFDDVSTS---EQM-EFLIGNQGW-LMQGSRLIITAR-DKQ--------VLKNCGVDTIYEVKELFDDDA 110 (909)
Q Consensus 45 ~~L~~kr~LlVLDDv~~~---~~~-~~l~~~~~~-~~~gSrIivTTR-~~~--------v~~~~~~~~~y~l~~L~~~es 110 (909)
+.++.+--+|||||++.. ..+ +.+...+.. ...|..||+||. ... +...+...-++++++.+.+.-
T Consensus 189 ~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r 268 (440)
T PRK14088 189 EKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETR 268 (440)
T ss_pred HHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHH
Confidence 333333458999999743 111 122221111 123457888874 322 222234456889999999999
Q ss_pred HHHHHHhhcCCCCCCchhHHHHHHHHHHhCCC
Q 039311 111 RMLFSRYAFGKNYPNVGYMELSNKIIKYAKGV 142 (909)
Q Consensus 111 ~~LF~~~af~~~~~~~~~~~l~~~iv~~c~Gl 142 (909)
.+++.+.+-.....-+ .++..-|++++.|.
T Consensus 269 ~~IL~~~~~~~~~~l~--~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 269 KKIARKMLEIEHGELP--EEVLNFVAENVDDN 298 (440)
T ss_pred HHHHHHHHHhcCCCCC--HHHHHHHHhccccC
Confidence 9999888743222111 35666777776664
No 179
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=33.11 E-value=84 Score=35.42 Aligned_cols=71 Identities=13% Similarity=0.213 Sum_probs=45.7
Q ss_pred EEEEEeCCCCHH---HHH-HHhhccC-CCCCCCEEEEEeCC---------chhhhhcCCCcEEECCCCCHHHHHHHHHHh
Q 039311 52 VLIVFDDVSTSE---QME-FLIGNQG-WLMQGSRLIITARD---------KQVLKNCGVDTIYEVKELFDDDARMLFSRY 117 (909)
Q Consensus 52 ~LlVLDDv~~~~---~~~-~l~~~~~-~~~~gSrIivTTR~---------~~v~~~~~~~~~y~l~~L~~~es~~LF~~~ 117 (909)
=++++||++... .|+ .+...+. ....|-.||+|++. .++...++..-++++++++++.-.+...++
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kk 256 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKK 256 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHH
Confidence 388899996422 222 2222221 12244489999854 234445566679999999999999999887
Q ss_pred hcCCC
Q 039311 118 AFGKN 122 (909)
Q Consensus 118 af~~~ 122 (909)
|-...
T Consensus 257 a~~~~ 261 (408)
T COG0593 257 AEDRG 261 (408)
T ss_pred HHhcC
Confidence 75444
No 180
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=32.71 E-value=3.7e+02 Score=30.05 Aligned_cols=135 Identities=15% Similarity=0.145 Sum_probs=79.5
Q ss_pred CChHHHHHHHHHHHhcCCCCcccCCccchHHHHHhhC--CCeEEEEEeCCCCHHH-----HHHHhhccCCCCCCCEEEEE
Q 039311 12 GGLAHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLS--RKKVLIVFDDVSTSEQ-----MEFLIGNQGWLMQGSRLIIT 84 (909)
Q Consensus 12 ~~~~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L~--~kr~LlVLDDv~~~~~-----~~~l~~~~~~~~~gSrIivT 84 (909)
.+...+..+|+.++. +.....+...+..+.+.+.+. ++.++||||+|+.... +-.|....... ++||+|.
T Consensus 84 ~t~~~i~~~i~~~~~-~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~--~~~v~vi 160 (366)
T COG1474 84 RTPYQVLSKILNKLG-KVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGEN--KVKVSII 160 (366)
T ss_pred CCHHHHHHHHHHHcC-CCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhcccc--ceeEEEE
Confidence 455667777777775 333333445566777777775 5899999999975432 22333333322 5766554
Q ss_pred --eCCchhhhhc--------CCCcEEECCCCCHHHHHHHHHHhh---cCCCCCCchhHHHHHHHHHHhCC-CchHHHHHh
Q 039311 85 --ARDKQVLKNC--------GVDTIYEVKELFDDDARMLFSRYA---FGKNYPNVGYMELSNKIIKYAKG-VPLAIKVLG 150 (909)
Q Consensus 85 --TR~~~v~~~~--------~~~~~y~l~~L~~~es~~LF~~~a---f~~~~~~~~~~~l~~~iv~~c~G-lPLal~~lg 150 (909)
+-+......+ +. ..+..++-+.+|-.+.....| |.....+++..+++..++.+-+| .-.|+..+-
T Consensus 161 ~i~n~~~~~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 161 AVSNDDKFLDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred EEeccHHHHHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 4444333333 22 236777888888887776554 55665566666666666666665 334554443
No 181
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.14 E-value=1.7e+02 Score=35.26 Aligned_cols=93 Identities=9% Similarity=0.048 Sum_probs=59.1
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEe-CCchhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCC-C
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITA-RDKQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKN-Y 123 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~-~ 123 (909)
+++-++|+|+++.. ...+.|...+..-...+.+|++| +.+.+.... ....++++..++.++..+...+.+-... .
T Consensus 126 ~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 126 GRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 34557899999764 34677777666544566665555 444554432 2346899999999998877765543222 1
Q ss_pred CCchhHHHHHHHHHHhCCCch
Q 039311 124 PNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 124 ~~~~~~~l~~~iv~~c~GlPL 144 (909)
.+ .+.+..+++.++|-.-
T Consensus 206 I~---~eal~~La~~s~Gdlr 223 (620)
T PRK14954 206 ID---ADALQLIARKAQGSMR 223 (620)
T ss_pred CC---HHHHHHHHHHhCCCHH
Confidence 21 3456788899998553
No 182
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=30.07 E-value=61 Score=32.41 Aligned_cols=64 Identities=17% Similarity=0.278 Sum_probs=39.1
Q ss_pred chHHHHHhhCCCe-EEEEEeCCCCHHH-----HHHHhhccCCCCCCCEEEEEeCCch--hhhhcCCCcEEECCC
Q 039311 39 GLNFRSKRLSRKK-VLIVFDDVSTSEQ-----MEFLIGNQGWLMQGSRLIITARDKQ--VLKNCGVDTIYEVKE 104 (909)
Q Consensus 39 ~~~~i~~~L~~kr-~LlVLDDv~~~~~-----~~~l~~~~~~~~~gSrIivTTR~~~--v~~~~~~~~~y~l~~ 104 (909)
+-+..++.+...+ =|||||.+...-. .+.+...+....++--||+|-|+.. +... +|.+-+|..
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~--ADlVTEm~~ 174 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAPRELIEA--ADLVTEMRP 174 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh--Cchheeccc
Confidence 3455566665544 4999999964332 4455555544557789999999862 2222 344555555
No 183
>PRK04132 replication factor C small subunit; Provisional
Probab=28.84 E-value=3.8e+02 Score=33.55 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=64.5
Q ss_pred CeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhcC-CCcEEECCCCCHHHHHHHHHHhhcCCCCCC
Q 039311 50 KKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDK-QVLKNCG-VDTIYEVKELFDDDARMLFSRYAFGKNYPN 125 (909)
Q Consensus 50 kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~~-~~~~y~l~~L~~~es~~LF~~~af~~~~~~ 125 (909)
+.-++|||+++.. ++.+.|...........++|.+|.+. .+..... .-.++++.++++++-.+...+-+-.....-
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4579999999865 46777777666555667777766654 3433321 235899999999988887766553222111
Q ss_pred chhHHHHHHHHHHhCCCchHHHH
Q 039311 126 VGYMELSNKIIKYAKGVPLAIKV 148 (909)
Q Consensus 126 ~~~~~l~~~iv~~c~GlPLal~~ 148 (909)
+ .+....|++.|+|.+-.+..
T Consensus 710 ~--~e~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 710 T--EEGLQAILYIAEGDMRRAIN 730 (846)
T ss_pred C--HHHHHHHHHHcCCCHHHHHH
Confidence 1 35678999999998854443
No 184
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=28.74 E-value=61 Score=31.85 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=38.5
Q ss_pred chHHHHHhhCCCeE-EEEEeCCCCHHH-----HHHHhhccCCCCCCCEEEEEeCCch--hhhhcCCCcEEECCC
Q 039311 39 GLNFRSKRLSRKKV-LIVFDDVSTSEQ-----MEFLIGNQGWLMQGSRLIITARDKQ--VLKNCGVDTIYEVKE 104 (909)
Q Consensus 39 ~~~~i~~~L~~kr~-LlVLDDv~~~~~-----~~~l~~~~~~~~~gSrIivTTR~~~--v~~~~~~~~~y~l~~ 104 (909)
+-+..++.+...+| |||||.+...-. .+.+...+....++--||+|-|+.. +... +|.+-+|..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~--AD~VTEm~~ 156 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLEL--ADLVTEMRP 156 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHh--Cceeeeecc
Confidence 44556666665554 999999953222 3344444444446779999999862 2222 455566555
No 185
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=27.31 E-value=2.9e+02 Score=30.06 Aligned_cols=47 Identities=26% Similarity=0.239 Sum_probs=31.2
Q ss_pred EEECCCCCHHHHHHHHHHhhcCCCCCC-chhHHHHHHHHHHhCCCchH
Q 039311 99 IYEVKELFDDDARMLFSRYAFGKNYPN-VGYMELSNKIIKYAKGVPLA 145 (909)
Q Consensus 99 ~y~l~~L~~~es~~LF~~~af~~~~~~-~~~~~l~~~iv~~c~GlPLa 145 (909)
.++|++++.+|+..++..++=.+--.. ..-+...++..--.+|.|--
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~e 305 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRE 305 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHH
Confidence 789999999999999988874433222 22233445555555787743
No 186
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=27.30 E-value=2.4e+02 Score=33.63 Aligned_cols=97 Identities=13% Similarity=0.114 Sum_probs=59.1
Q ss_pred eEEEEEeCCCC--HHHHHHHhhccCCCCCCCEEEEEe-CCchhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCCCc
Q 039311 51 KVLIVFDDVST--SEQMEFLIGNQGWLMQGSRLIITA-RDKQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYPNV 126 (909)
Q Consensus 51 r~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrIivTT-R~~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~~~ 126 (909)
+=++|+|+++. ...++.|...+........+|++| .-..+.... ....++++.+++.++....+...+-.....-+
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is 199 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIE 199 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 33599999975 455777777665444566666555 333443322 12347999999999988887765533221111
Q ss_pred hhHHHHHHHHHHhCCCch-HHHHH
Q 039311 127 GYMELSNKIIKYAKGVPL-AIKVL 149 (909)
Q Consensus 127 ~~~~l~~~iv~~c~GlPL-al~~l 149 (909)
.+.+..+++.++|-+- |+..+
T Consensus 200 --~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 200 --DNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred --HHHHHHHHHHcCCcHHHHHHHH
Confidence 3456778888888653 44333
No 187
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=27.12 E-value=3.1e+02 Score=30.18 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=62.6
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCC-chhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARD-KQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~-~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++=.+|+|+++.. +.-+.|...+..-..++-+|.+|.+ ..++... ..-..+.+.+++.+++.+...... + .
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~--~- 182 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T--M- 182 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C--C-
Confidence 46668889999754 4466677666655567777777766 4455443 122468999999999988775432 1 1
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
+ .+-+..++..++|.|..+..+
T Consensus 183 ~---~~~a~~~~~la~G~~~~Al~l 204 (334)
T PRK07993 183 S---QDALLAALRLSAGAPGAALAL 204 (334)
T ss_pred C---HHHHHHHHHHcCCCHHHHHHH
Confidence 1 223678899999999755444
No 188
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.01 E-value=4.8e+02 Score=30.41 Aligned_cols=99 Identities=8% Similarity=0.027 Sum_probs=59.9
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeC-Cchhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITAR-DKQVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR-~~~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+++.. +..+.|...+....+...+|++|. -..+.... .....+++.+++.++..+.+...+-.....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~ 197 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE 197 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 46679999999754 446666666654445566665553 33333221 122479999999999888777655332211
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
. -.+....++..++|.+-.+..+
T Consensus 198 i--d~~al~~La~~s~G~lr~al~~ 220 (486)
T PRK14953 198 Y--EEKALDLLAQASEGGMRDAASL 220 (486)
T ss_pred C--CHHHHHHHHHHcCCCHHHHHHH
Confidence 1 1244667788888876544333
No 189
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=26.08 E-value=87 Score=30.90 Aligned_cols=50 Identities=12% Similarity=0.078 Sum_probs=32.4
Q ss_pred chHHHHHhhCCC-eEEEEEeCCCCHH-----HHHHHhhccCCCCCCCEEEEEeCCc
Q 039311 39 GLNFRSKRLSRK-KVLIVFDDVSTSE-----QMEFLIGNQGWLMQGSRLIITARDK 88 (909)
Q Consensus 39 ~~~~i~~~L~~k-r~LlVLDDv~~~~-----~~~~l~~~~~~~~~gSrIivTTR~~ 88 (909)
+-+..++.+... -=|||||.|...- ..+.+...+....++--||+|-|+.
T Consensus 103 ~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 103 LWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 345556666554 4599999995432 2444444444445778999999985
No 190
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=25.83 E-value=4.4e+02 Score=31.84 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=61.7
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHhhcCCCCC
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRYAFGKNYP 124 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~af~~~~~ 124 (909)
+++-++|+|+++.. +.++.|...+..-.....+|++|.+. .+.... ..-..+++..++.++..+.+.+.+-.....
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~ 199 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE 199 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence 45568899999854 55777777666444455556555443 343332 123578888999988887777665432211
Q ss_pred CchhHHHHHHHHHHhCCCchHHHHH
Q 039311 125 NVGYMELSNKIIKYAKGVPLAIKVL 149 (909)
Q Consensus 125 ~~~~~~l~~~iv~~c~GlPLal~~l 149 (909)
.+ .+....|+++++|.+..+..+
T Consensus 200 is--~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 200 IE--PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred CC--HHHHHHHHHHcCCCHHHHHHH
Confidence 11 245778899999987655443
No 191
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=25.65 E-value=2.5e+02 Score=29.55 Aligned_cols=67 Identities=9% Similarity=0.083 Sum_probs=42.1
Q ss_pred EEEEEeCCCC----------HHHHHHHhhccCCCCCCCEEEEEeCCchh----------hhhcCCCcEEECCCCCHHHHH
Q 039311 52 VLIVFDDVST----------SEQMEFLIGNQGWLMQGSRLIITARDKQV----------LKNCGVDTIYEVKELFDDDAR 111 (909)
Q Consensus 52 ~LlVLDDv~~----------~~~~~~l~~~~~~~~~gSrIivTTR~~~v----------~~~~~~~~~y~l~~L~~~es~ 111 (909)
-+|+||+++. .++.+.+..........-.||+++...+. ... ....++++.++.+|-.
T Consensus 107 ~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 107 GVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELM 184 (261)
T ss_pred CEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHH
Confidence 4889999975 23456666655433333355555544332 222 2456899999999999
Q ss_pred HHHHHhhcC
Q 039311 112 MLFSRYAFG 120 (909)
Q Consensus 112 ~LF~~~af~ 120 (909)
+++.+.+-.
T Consensus 185 ~Il~~~~~~ 193 (261)
T TIGR02881 185 EIAERMVKE 193 (261)
T ss_pred HHHHHHHHH
Confidence 999877643
No 192
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=23.78 E-value=3.3e+02 Score=31.23 Aligned_cols=138 Identities=15% Similarity=0.136 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHhcCCCCcccCCccchHHHHHhhCCCe--EEEEEeCCCCHHH--HHHHhhccCCCC-CCCEEEEEeCCc-
Q 039311 15 AHLRQILLSAILDDGNVSIGCPSIGLNFRSKRLSRKK--VLIVFDDVSTSEQ--MEFLIGNQGWLM-QGSRLIITARDK- 88 (909)
Q Consensus 15 ~~l~~~ll~~i~~~~~~~~~~~~~~~~~i~~~L~~kr--~LlVLDDv~~~~~--~~~l~~~~~~~~-~gSrIivTTR~~- 88 (909)
..+-+.|.+.+..+..... ...+..+.+.++.+..+ +|+|||.++.... -..+...+.|-. ++||+|+.---.
T Consensus 220 ~aiF~kI~~~~~q~~~s~~-~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANs 298 (529)
T KOG2227|consen 220 SAIFKKIFSSLLQDLVSPG-TGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANS 298 (529)
T ss_pred HHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhh
Confidence 3556666666642222111 11344666777776654 8999999976542 223444455543 788887764211
Q ss_pred -h----hhhhcC-----CCcEEECCCCCHHHHHHHHHHhhcCCCC---CCchhHHHHHHHHHHhCCCchHHHHHhHhh
Q 039311 89 -Q----VLKNCG-----VDTIYEVKELFDDDARMLFSRYAFGKNY---PNVGYMELSNKIIKYAKGVPLAIKVLGRFL 153 (909)
Q Consensus 89 -~----v~~~~~-----~~~~y~l~~L~~~es~~LF~~~af~~~~---~~~~~~~l~~~iv~~c~GlPLal~~lg~~L 153 (909)
+ .+.... ......-++-+.++-.++|..+.-.... .+...+-.|++++.--|.+--|+.+.-+++
T Consensus 299 lDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 299 LDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 1 111111 2357788889999999999877633221 112344455555555555666665554433
No 193
>CHL00181 cbbX CbbX; Provisional
Probab=23.49 E-value=3.7e+02 Score=28.87 Aligned_cols=69 Identities=9% Similarity=0.032 Sum_probs=45.0
Q ss_pred EEEEEeCCCCH-----------HHHHHHhhccCCCCCCCEEEEEeCCchhhhhc--------CCCcEEECCCCCHHHHHH
Q 039311 52 VLIVFDDVSTS-----------EQMEFLIGNQGWLMQGSRLIITARDKQVLKNC--------GVDTIYEVKELFDDDARM 112 (909)
Q Consensus 52 ~LlVLDDv~~~-----------~~~~~l~~~~~~~~~gSrIivTTR~~~v~~~~--------~~~~~y~l~~L~~~es~~ 112 (909)
-+|+||++... +..+.|.........+-+||++|....+-... ....+++.++++.+|-.+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 48899999642 33455555554444455777777644432211 135689999999999999
Q ss_pred HHHHhhcC
Q 039311 113 LFSRYAFG 120 (909)
Q Consensus 113 LF~~~af~ 120 (909)
++...+-+
T Consensus 204 I~~~~l~~ 211 (287)
T CHL00181 204 IAKIMLEE 211 (287)
T ss_pred HHHHHHHH
Confidence 98877644
No 194
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=22.95 E-value=65 Score=20.89 Aligned_cols=14 Identities=29% Similarity=0.199 Sum_probs=9.4
Q ss_pred CCCcEEECCCCCCe
Q 039311 605 SSRSILLLEKNNFE 618 (909)
Q Consensus 605 ~~L~~L~L~~n~l~ 618 (909)
++|++|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 45677777777664
No 195
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=22.87 E-value=1.9e+02 Score=31.32 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=40.4
Q ss_pred CeEEEEEeCCCCH---HHHHHHhhccCCCCCCCEEEEEeCCchhh-hhc-CCCcEEECCCCCHHHHHHHHHH
Q 039311 50 KKVLIVFDDVSTS---EQMEFLIGNQGWLMQGSRLIITARDKQVL-KNC-GVDTIYEVKELFDDDARMLFSR 116 (909)
Q Consensus 50 kr~LlVLDDv~~~---~~~~~l~~~~~~~~~gSrIivTTR~~~v~-~~~-~~~~~y~l~~L~~~es~~LF~~ 116 (909)
.+-+||+||++.. +..+.+...+.....+.++|+||...+-+ ... +.-.++.++..+.++..+++..
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHH
Confidence 4557889999755 23344444344455678999998754311 111 1123677777888887776644
No 196
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=22.26 E-value=8.3e+02 Score=24.75 Aligned_cols=103 Identities=15% Similarity=0.070 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHhcCCC--------CcccCCccchHHHHHhhCCCeEEEEEeCCCC--HHHHHHHhhccCCCCCCCEE
Q 039311 12 GGLAHLRQILLSAILDDGN--------VSIGCPSIGLNFRSKRLSRKKVLIVFDDVST--SEQMEFLIGNQGWLMQGSRL 81 (909)
Q Consensus 12 ~~~~~l~~~ll~~i~~~~~--------~~~~~~~~~~~~i~~~L~~kr~LlVLDDv~~--~~~~~~l~~~~~~~~~gSrI 81 (909)
.+......++..... .++ +++++..+..+.+.-.=..+|+ |+|+++. .+..+++...+..-..++.+
T Consensus 11 ~d~e~~~~~l~~~~~-~~~~~~f~~~~i~Vd~iReii~~~~~~~~~~k~--iI~~a~~l~~~A~NaLLK~LEEPp~~~~f 87 (206)
T PRK08485 11 SDFEESKEELINEFG-KKNLRFFIKEEFKIEDAKEVIAEAYIAESEEKI--IVIAAPSYGIEAQNALLKILEEPPKNICF 87 (206)
T ss_pred CCHHHHHHHHHHhcC-CCceEEECCCCCCHHHHHHHHHHHhhCCCCcEE--EEEchHhhCHHHHHHHHHHhcCCCCCeEE
Confidence 345555666666664 222 2222222222222222223554 4677764 44577777777655567777
Q ss_pred EEEeCCch-hhhh----cCC----------CcEEECCCCCHHHHHHHHHHh
Q 039311 82 IITARDKQ-VLKN----CGV----------DTIYEVKELFDDDARMLFSRY 117 (909)
Q Consensus 82 ivTTR~~~-v~~~----~~~----------~~~y~l~~L~~~es~~LF~~~ 117 (909)
|++|.+.+ ++.. |.. .-.+.++.|+.++..+...+.
T Consensus 88 iL~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~~ 138 (206)
T PRK08485 88 IIVAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKEL 138 (206)
T ss_pred EEEeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHHH
Confidence 76666653 4433 321 124788999999999988773
No 197
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=21.52 E-value=4.5e+02 Score=28.85 Aligned_cols=69 Identities=13% Similarity=0.120 Sum_probs=47.5
Q ss_pred CCeEEEEEeCCCCH--HHHHHHhhccCCCCCCCEEEEEeCCc-hhhhhc-CCCcEEECCCCCHHHHHHHHHHh
Q 039311 49 RKKVLIVFDDVSTS--EQMEFLIGNQGWLMQGSRLIITARDK-QVLKNC-GVDTIYEVKELFDDDARMLFSRY 117 (909)
Q Consensus 49 ~kr~LlVLDDv~~~--~~~~~l~~~~~~~~~gSrIivTTR~~-~v~~~~-~~~~~y~l~~L~~~es~~LF~~~ 117 (909)
+++=.+|+|+++.. +.-+.|...+..-..++.+|.+|.+. .+.... ..-.++++.+++.++..+.+...
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 34556889999754 34667777666556788888887664 344433 22358999999999998888653
No 198
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=21.26 E-value=2.8e+02 Score=31.73 Aligned_cols=102 Identities=18% Similarity=0.112 Sum_probs=50.0
Q ss_pred CCccEEEeeCCCC-CccCCCC----CCCCeeEEEcCCCCccccccccccCCCCCEEecCCCcCCCcCCCC----Cccccc
Q 039311 340 TELRYLQWHGCPL-KSLSSKI----PPENLVSLEMPHSSIKQLWKGVQRLVNLKHINLSHSEHLTKIPDL----SLATNL 410 (909)
Q Consensus 340 ~~Lr~L~l~~~~l-~~lp~~~----~~~~L~~L~L~~~~i~~lp~~~~~L~~L~~L~Ls~~~~l~~~p~l----~~l~~L 410 (909)
..+|+++++.+++ ...|..+ ...+|++=.++.-.|.+++..-+ =..+.+++|+.+..-+.+|.. ..-..+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~pl~lr~c~lsskfis~l~~qsg-~~~lteldls~n~~Kddip~~~n~~a~~~vl 243 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNPLSLRVCELSSKFISKLLIQSG-RLWLTELDLSTNGGKDDIPRTLNKKAGTLVL 243 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCccchhhhhhhhhHHHHhhhhhc-cccccccccccCCCCccchhHHHHhhhhhhh
Confidence 4567777777664 2223222 22223333333333444441111 124677888888777777752 222446
Q ss_pred cccccccccccc-ee--cccccCCCcccEeccccc
Q 039311 411 ESLNFQGCTCLL-ET--HSSIQYLNKLVVLNLKHC 442 (909)
Q Consensus 411 ~~L~L~~c~~l~-~~--p~~i~~L~~L~~L~L~~c 442 (909)
+.++.++..... .. +-..+.-++|.+.+++.+
T Consensus 244 ~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~n 278 (553)
T KOG4242|consen 244 FKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRN 278 (553)
T ss_pred hcccccccccchhhcccccccccccccchhhhccC
Confidence 666666543211 11 222345567777776654
No 199
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=21.20 E-value=5.9e+02 Score=27.15 Aligned_cols=96 Identities=14% Similarity=0.037 Sum_probs=54.0
Q ss_pred hCCCeEEEEEeCCCC---HHHHHHHhhccCCCCCCCEEEEEeCCch-------hhhhcCCCcEEECCCCCHHHHHHHHHH
Q 039311 47 LSRKKVLIVFDDVST---SEQMEFLIGNQGWLMQGSRLIITARDKQ-------VLKNCGVDTIYEVKELFDDDARMLFSR 116 (909)
Q Consensus 47 L~~kr~LlVLDDv~~---~~~~~~l~~~~~~~~~gSrIivTTR~~~-------v~~~~~~~~~y~l~~L~~~es~~LF~~ 116 (909)
|-++|-++|+++... ...++.+...+....++..+|++|..-+ .........+++...++..+-.+....
T Consensus 43 lf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~ 122 (302)
T TIGR01128 43 LFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQA 122 (302)
T ss_pred cccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHH
Confidence 334677788998865 3457777776665556667777764311 222222345677777877776666655
Q ss_pred hhcCCCCCCchhHHHHHHHHHHhCCCch
Q 039311 117 YAFGKNYPNVGYMELSNKIIKYAKGVPL 144 (909)
Q Consensus 117 ~af~~~~~~~~~~~l~~~iv~~c~GlPL 144 (909)
.+-..+..-+ .+.+..++..++|-..
T Consensus 123 ~~~~~g~~i~--~~a~~~l~~~~~~d~~ 148 (302)
T TIGR01128 123 RLKKLGLRID--PDAVQLLAELVEGNLL 148 (302)
T ss_pred HHHHcCCCCC--HHHHHHHHHHhCcHHH
Confidence 5533321111 2345555566655443
Done!